locus-tag class description N3114_00005 PF00308 Bacterial dnaA protein N3114_00005 PF08299 Bacterial dnaA protein helix-turn-helix N3114_00005 PF11638 DnaA N-terminal domain N3114_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain N3114_00010 PF02767 DNA polymerase III beta subunit, central domain N3114_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain N3114_00015 PF01751 Toprim domain N3114_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_00015 PF00204 DNA gyrase B N3114_00015 PF00986 DNA gyrase B subunit, carboxyl terminus N3114_00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3114_00025 PF14489 QueF-like protein N3114_00035 PF09335 SNARE associated Golgi protein N3114_00040 PF13649 Methyltransferase domain N3114_00045 PF00005 ABC transporter N3114_00045 PF08402 TOBE domain N3114_00050 PF00528 Binding-protein-dependent transport system inner membrane component N3114_00065 PF03459 TOBE domain N3114_00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3114_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3114_00075 PF03466 LysR substrate binding domain N3114_00085 PF00849 RNA pseudouridylate synthase N3114_00090 PF10397 Adenylosuccinate lyase C-terminus N3114_00090 PF00206 Lyase N3114_00095 PF03477 ATP cone domain N3114_00095 PF02867 Ribonucleotide reductase, barrel domain N3114_00095 PF00317 Ribonucleotide reductase, all-alpha domain N3114_00100 PF00268 Ribonucleotide reductase, small chain N3114_00120 PF18393 MotY N-terminal domain N3114_00120 PF00691 OmpA family N3114_00130 PF08240 Alcohol dehydrogenase GroES-like domain N3114_00130 PF00107 Zinc-binding dehydrogenase N3114_00135 PF01638 HxlR-like helix-turn-helix N3114_00140 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus N3114_00140 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus N3114_00145 PF02637 GatB domain N3114_00145 PF02934 GatB/GatE catalytic domain N3114_00160 PF02652 L-lactate permease N3114_00165 PF00072 Response regulator receiver domain N3114_00165 PF00486 Transcriptional regulatory protein, C terminal N3114_00170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_00170 PF00512 His Kinase A (phospho-acceptor) domain N3114_00170 PF00989 PAS fold N3114_00175 PF02589 LUD domain N3114_00180 PF02589 LUD domain N3114_00180 PF13183 4Fe-4S dicluster domain N3114_00180 PF11870 Domain of unknown function (DUF3390) N3114_00185 PF02754 Cysteine-rich domain N3114_00190 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N3114_00195 PF00364 Biotin-requiring enzyme N3114_00200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N3114_00200 PF00289 Biotin carboxylase, N-terminal domain N3114_00200 PF02785 Biotin carboxylase C-terminal domain N3114_00205 PF00271 Helicase conserved C-terminal domain N3114_00205 PF00270 DEAD/DEAH box helicase N3114_00210 PF01384 Phosphate transporter family N3114_00220 PF00733 Asparagine synthase N3114_00220 PF13537 Glutamine amidotransferase domain N3114_00235 PF02562 PhoH-like protein N3114_00235 PF13638 PIN domain N3114_00240 PF03653 Uncharacterised protein family (UPF0093) N3114_00245 PF16193 AAA C-terminal domain N3114_00245 PF01661 Macro domain N3114_00245 PF05496 Holliday junction DNA helicase RuvB P-loop domain N3114_00245 PF12002 MgsA AAA+ ATPase C terminal N3114_00250 PF00849 RNA pseudouridylate synthase N3114_00250 PF01479 S4 domain N3114_00255 PF00571 CBS domain N3114_00255 PF01380 SIS domain N3114_00260 PF00753 Metallo-beta-lactamase superfamily N3114_00260 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain N3114_00260 PF17770 Ribonuclease J C-terminal domain N3114_00265 PF00398 Ribosomal RNA adenine dimethylase N3114_00270 PF00977 Histidine biosynthesis protein N3114_00285 PF04055 Radical SAM superfamily N3114_00290 PF00749 tRNA synthetases class I (E and Q), catalytic domain N3114_00295 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) N3114_00300 PF00486 Transcriptional regulatory protein, C terminal N3114_00300 PF00072 Response regulator receiver domain N3114_00305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_00325 PF00873 AcrB/AcrD/AcrF family N3114_00330 PF04264 YceI-like domain N3114_00355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N3114_00355 PF03129 Anticodon binding domain N3114_00355 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N3114_00360 PF00707 Translation initiation factor IF-3, C-terminal domain N3114_00360 PF05198 Translation initiation factor IF-3, N-terminal domain N3114_00365 PF01632 Ribosomal protein L35 N3114_00370 PF00453 Ribosomal protein L20 N3114_00385 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3114_00390 PF12804 MobA-like NTP transferase domain N3114_00395 PF00330 Aconitase family (aconitate hydratase) N3114_00400 PF01252 Signal peptidase (SPase) II N3114_00405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N3114_00405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N3114_00405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N3114_00405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N3114_00410 PF01649 Ribosomal protein S20 N3114_00415 PF03462 PCRF domain N3114_00415 PF00472 RF-1 domain N3114_00425 PF12849 PBP superfamily domain N3114_00430 PF12792 CSS motif domain associated with EAL N3114_00430 PF00563 EAL domain N3114_00435 PF00528 Binding-protein-dependent transport system inner membrane component N3114_00440 PF00528 Binding-protein-dependent transport system inner membrane component N3114_00445 PF00005 ABC transporter N3114_00450 PF01895 PhoU domain N3114_00460 PF00072 Response regulator receiver domain N3114_00460 PF00486 Transcriptional regulatory protein, C terminal N3114_00465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_00465 PF00989 PAS fold N3114_00465 PF16736 Single Cache-like N3114_00465 PF00512 His Kinase A (phospho-acceptor) domain N3114_00470 PF00572 Ribosomal protein L13 N3114_00475 PF00380 Ribosomal protein S9/S16 N3114_00480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N3114_00485 PF13419 Haloacid dehalogenase-like hydrolase N3114_00500 PF00665 Integrase core domain N3114_00505 PF01695 IstB-like ATP binding protein N3114_00520 PF00005 ABC transporter N3114_00520 PF09383 NIL domain N3114_00525 PF02405 Permease MlaE N3114_00540 PF02664 S-Ribosylhomocysteinase (LuxS) N3114_00555 PF00768 D-alanyl-D-alanine carboxypeptidase N3114_00555 PF07943 Penicillin-binding protein 5, C-terminal domain N3114_00570 PF02574 Homocysteine S-methyltransferase N3114_00570 PF00809 Pterin binding enzyme N3114_00570 PF02965 Vitamin B12 dependent methionine synthase, activation domain N3114_00570 PF02310 B12 binding domain N3114_00570 PF02607 B12 binding domain N3114_00575 PF01063 Amino-transferase class IV N3114_00590 PF01502 Phosphoribosyl-AMP cyclohydrolase N3114_00590 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase N3114_00600 PF10609 NUBPL iron-transfer P-loop NTPase N3114_00600 PF01883 Iron-sulfur cluster assembly protein N3114_00605 PF01964 Radical SAM ThiC family N3114_00615 PF02542 YgbB family N3114_00615 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase N3114_00625 PF04608 Phosphatidylglycerophosphatase A N3114_00630 PF00117 Glutamine amidotransferase class-I N3114_00630 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain N3114_00640 PF00709 Adenylosuccinate synthetase N3114_00645 PF13393 Histidyl-tRNA synthetase N3114_00650 PF00266 Aminotransferase class-V N3114_00655 PF04264 YceI-like domain N3114_00660 PF01047 MarR family N3114_00680 PF02678 Pirin N3114_00680 PF17954 Quercetinase C-terminal cupin domain N3114_00685 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N3114_00685 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N3114_00690 PF02769 AIR synthase related protein, C-terminal domain N3114_00690 PF00586 AIR synthase related protein, N-terminal domain N3114_00695 PF17284 Spermidine synthase tetramerisation domain N3114_00700 PF01121 Dephospho-CoA kinase N3114_00705 PF01678 Diaminopimelate epimerase N3114_00710 PF02222 ATP-grasp domain N3114_00715 PF00583 Acetyltransferase (GNAT) family N3114_00745 PF01197 Ribosomal protein L31 N3114_00750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N3114_00755 PF08032 RNA 2'-O ribose methyltransferase substrate binding N3114_00755 PF00588 SpoU rRNA Methylase family N3114_00765 PF00155 Aminotransferase class I and II N3114_00770 PF00742 Homoserine dehydrogenase N3114_00770 PF01842 ACT domain N3114_00770 PF03447 Homoserine dehydrogenase, NAD binding domain N3114_00785 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain N3114_00785 PF13288 DXP reductoisomerase C-terminal domain N3114_00785 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase N3114_00800 PF00814 Glycoprotease family N3114_00805 PF01253 Translation initiation factor SUI1 N3114_00810 PF01256 Carbohydrate kinase N3114_00810 PF03853 YjeF-related protein N-terminus N3114_00815 PF03091 CutA1 divalent ion tolerance protein N3114_00820 PF05690 Thiazole biosynthesis protein ThiG N3114_00860 PF00682 HMGL-like N3114_00860 PF02436 Conserved carboxylase domain N3114_00870 PF12833 Helix-turn-helix domain N3114_00875 PF00672 HAMP domain N3114_00875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_00875 PF02203 Tar ligand binding domain homologue N3114_00880 PF04851 Type III restriction enzyme, res subunit N3114_00880 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) N3114_00880 PF00271 Helicase conserved C-terminal domain N3114_00880 PF08463 EcoEI R protein C-terminal N3114_00895 PF02779 Transketolase, pyrimidine binding domain N3114_00895 PF00456 Transketolase, thiamine diphosphate binding domain N3114_00895 PF02780 Transketolase, C-terminal domain N3114_00900 PF03788 LrgA family N3114_00905 PF04172 LrgB-like family N3114_00915 PF03994 Domain of Unknown Function (DUF350) N3114_00920 PF00375 Sodium:dicarboxylate symporter family N3114_00930 PF13193 AMP-binding enzyme C-terminal domain N3114_00930 PF00501 AMP-binding enzyme N3114_00930 PF01553 Acyltransferase N3114_00935 PF08335 GlnD PII-uridylyltransferase N3114_00935 PF01966 HD domain N3114_00950 PF12796 Ankyrin repeats (3 copies) N3114_00955 PF00543 Nitrogen regulatory protein P-II N3114_00965 PF02154 Flagellar motor switch protein FliM N3114_00965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N3114_00970 PF02119 Flagellar P-ring protein N3114_00980 PF01313 Bacterial export proteins, family 3 N3114_01005 PF02107 Flagellar L-ring protein N3114_01010 PF07559 Flagellar basal body protein FlaE N3114_01010 PF00460 Flagella basal body rod protein N3114_01010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3114_01015 PF07196 Flagellin hook IN motif N3114_01015 PF07195 Flagellar hook-associated protein 2 C-terminus N3114_01015 PF02465 Flagellar hook-associated protein 2 N-terminus N3114_01020 PF02561 Flagellar protein FliS N3114_01030 PF01171 PP-loop family N3114_01035 PF04055 Radical SAM superfamily N3114_01035 PF18693 TRAM domain N3114_01035 PF00919 Uncharacterized protein family UPF0004 N3114_01040 PF02569 Pantoate-beta-alanine ligase N3114_01045 PF00528 Binding-protein-dependent transport system inner membrane component N3114_01050 PF01648 4'-phosphopantetheinyl transferase superfamily N3114_01055 PF03616 Sodium/glutamate symporter N3114_01060 PF03652 Holliday junction resolvase N3114_01075 PF00923 Transaldolase/Fructose-6-phosphate aldolase N3114_01080 PF01474 Class-II DAHP synthetase family N3114_01085 PF03502 Nucleoside-specific channel-forming protein, Tsx N3114_01090 PF03960 ArsC family N3114_01095 PF02686 Glu-tRNAGln amidotransferase C subunit N3114_01100 PF01702 Queuine tRNA-ribosyltransferase N3114_01110 PF00155 Aminotransferase class I and II N3114_01120 PF01225 Mur ligase family, catalytic domain N3114_01120 PF02875 Mur ligase family, glutamate ligase domain N3114_01120 PF08245 Mur ligase middle domain N3114_01130 PF04748 Divergent polysaccharide deacetylase N3114_01135 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain N3114_01135 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain N3114_01140 PF00773 RNB domain N3114_01145 PF02623 FliW protein N3114_01155 PF01250 Ribosomal protein S6 N3114_01160 PF00436 Single-strand binding protein family N3114_01165 PF01084 Ribosomal protein S18 N3114_01175 PF09190 DALR domain N3114_01175 PF01406 tRNA synthetases class I (C) catalytic domain N3114_01180 PF13184 NusA-like KH domain N3114_01180 PF08529 NusA N-terminal domain N3114_01190 PF04055 Radical SAM superfamily N3114_01190 PF01938 TRAM domain N3114_01190 PF00919 Uncharacterized protein family UPF0004 N3114_01195 PF04028 Domain of unknown function (DUF374) N3114_01205 PF04055 Radical SAM superfamily N3114_01215 PF00484 Carbonic anhydrase N3114_01220 PF00155 Aminotransferase class I and II N3114_01225 PF02021 Uncharacterised protein family UPF0102 N3114_01230 PF05690 Thiazole biosynthesis protein ThiG N3114_01230 PF02597 ThiS family N3114_01240 PF02887 Pyruvate kinase, alpha/beta domain N3114_01240 PF00391 PEP-utilising enzyme, mobile domain N3114_01240 PF00224 Pyruvate kinase, barrel domain N3114_01245 PF00202 Aminotransferase class-III N3114_01255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N3114_01255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N3114_01260 PF00425 chorismate binding enzyme N3114_01270 PF03831 PhnA domain N3114_01270 PF08274 PhnA Zinc-Ribbon N3114_01275 PF01863 Protein of unknown function DUF45 N3114_01280 PF01925 Sulfite exporter TauE/SafE N3114_01305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N3114_01305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N3114_01320 PF00285 Citrate synthase, C-terminal domain N3114_01325 PF00330 Aconitase family (aconitate hydratase) N3114_01325 PF00694 Aconitase C-terminal domain N3114_01330 PF04303 PrpF protein N3114_01340 PF00857 Isochorismatase family N3114_01345 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain N3114_01345 PF03900 Porphobilinogen deaminase, C-terminal domain N3114_01355 PF12169 DNA polymerase III subunits gamma and tau domain III N3114_01355 PF12170 DNA polymerase III tau subunit V interacting with alpha N3114_01360 PF01177 Asp/Glu/Hydantoin racemase N3114_01365 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N3114_01365 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain N3114_01370 PF07497 Rho termination factor, RNA-binding domain N3114_01370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N3114_01370 PF07498 Rho termination factor, N-terminal domain N3114_01375 PF10417 C-terminal domain of 1-Cys peroxiredoxin N3114_01375 PF00578 AhpC/TSA family N3114_01380 PF00037 4Fe-4S binding domain N3114_01385 PF00334 Nucleoside diphosphate kinase N3114_01395 PF01783 Ribosomal L32p protein family N3114_01400 PF02504 Fatty acid synthesis protein N3114_01405 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N3114_01405 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N3114_01415 PF00350 Dynamin family N3114_01420 PF00350 Dynamin family N3114_01425 PF13183 4Fe-4S dicluster domain N3114_01425 PF13085 2Fe-2S iron-sulfur cluster binding domain N3114_01430 PF00890 FAD binding domain N3114_01430 PF02910 Fumarate reductase flavoprotein C-term N3114_01435 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit N3114_01440 PF00361 Proton-conducting membrane transporter N3114_01445 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus N3114_01445 PF00361 Proton-conducting membrane transporter N3114_01450 PF00361 Proton-conducting membrane transporter N3114_01450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus N3114_01455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L N3114_01460 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 N3114_01465 PF12838 4Fe-4S dicluster domain N3114_01470 PF00146 NADH dehydrogenase N3114_01475 PF00384 Molybdopterin oxidoreductase N3114_01475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region N3114_01475 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal N3114_01480 PF00285 Citrate synthase, C-terminal domain N3114_01485 PF10531 SLBB domain N3114_01485 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region N3114_01485 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit N3114_01495 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit N3114_01495 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit N3114_01500 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N3114_01505 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 N3114_01510 PF00155 Aminotransferase class I and II N3114_01515 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase N3114_01520 PF12821 Threonine/Serine exporter, ThrE N3114_01525 PF06738 Putative threonine/serine exporter N3114_01535 PF03309 Type III pantothenate kinase N3114_01540 PF01634 ATP phosphoribosyltransferase N3114_01550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_01550 PF00672 HAMP domain N3114_01550 PF02203 Tar ligand binding domain homologue N3114_01560 PF00579 tRNA synthetases class I (W and Y) N3114_01565 PF00593 TonB dependent receptor N3114_01575 PF02659 Putative manganese efflux pump N3114_01585 PF16916 Dimerisation domain of Zinc Transporter N3114_01585 PF01545 Cation efflux family N3114_01590 PF02403 Seryl-tRNA synthetase N-terminal domain N3114_01590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N3114_01595 PF01578 Cytochrome C assembly protein N3114_01595 PF05140 ResB-like family N3114_01600 PF02335 Cytochrome c552 N3114_01605 PF03264 NapC/NirT cytochrome c family, N-terminal region N3114_01615 PF10442 FIST C domain N3114_01615 PF00563 EAL domain N3114_01615 PF00990 Diguanylate cyclase, GGDEF domain N3114_01615 PF08495 FIST N domain N3114_01620 PF08447 PAS fold N3114_01620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_01640 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) N3114_01645 PF12801 4Fe-4S binding domain N3114_01645 PF00037 4Fe-4S binding domain N3114_01650 PF12800 4Fe-4S binding domain N3114_01650 PF12838 4Fe-4S dicluster domain N3114_01655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N3114_01655 PF00384 Molybdopterin oxidoreductase N3114_01655 PF01568 Molydopterin dinucleotide binding domain N3114_01655 PF10518 TAT (twin-arginine translocation) pathway signal sequence N3114_01660 PF03480 Bacterial extracellular solute-binding protein, family 7 N3114_01665 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component N3114_01670 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N3114_01675 PF08447 PAS fold N3114_01675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_01675 PF08448 PAS fold N3114_01680 PF00072 Response regulator receiver domain N3114_01685 PF03737 Aldolase/RraA N3114_01690 PF10414 Sirohaem synthase dimerisation region N3114_01690 PF14824 Sirohaem biosynthesis protein central N3114_01690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N3114_01705 PF02885 Glycosyl transferase family, helical bundle domain N3114_01705 PF00591 Glycosyl transferase family, a/b domain N3114_01710 PF04055 Radical SAM superfamily N3114_01710 PF06463 Molybdenum Cofactor Synthesis C N3114_01715 PF00312 Ribosomal protein S15 N3114_01730 PF13380 CoA binding domain N3114_01735 PF08521 Two-component sensor kinase N-terminal N3114_01735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_01735 PF00512 His Kinase A (phospho-acceptor) domain N3114_01740 PF00072 Response regulator receiver domain N3114_01740 PF00486 Transcriptional regulatory protein, C terminal N3114_01745 PF00639 PPIC-type PPIASE domain N3114_01750 PF01116 Fructose-bisphosphate aldolase class-II N3114_01755 PF00171 Aldehyde dehydrogenase family N3114_01765 PF02472 Biopolymer transport protein ExbD/TolR N3114_01770 PF01618 MotA/TolQ/ExbB proton channel family N3114_01780 PF01202 Shikimate kinase N3114_01785 PF00815 Histidinol dehydrogenase N3114_01795 PF00348 Polyprenyl synthetase N3114_01800 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain N3114_01800 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain N3114_01800 PF01488 Shikimate / quinate 5-dehydrogenase N3114_01805 PF04073 Aminoacyl-tRNA editing domain N3114_01805 PF03129 Anticodon binding domain N3114_01805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N3114_01810 PF05552 Conserved TM helix N3114_01810 PF00924 Mechanosensitive ion channel N3114_01815 PF01743 Poly A polymerase head domain N3114_01815 PF01966 HD domain N3114_01815 PF12627 Probable RNA and SrmB- binding site of polymerase A N3114_01835 PF02699 Preprotein translocase subunit N3114_01840 PF02355 Protein export membrane protein N3114_01845 PF07549 SecD/SecF GG Motif N3114_01845 PF02355 Protein export membrane protein N3114_01860 PF13677 Membrane MotB of proton-channel complex MotA/MotB N3114_01860 PF00691 OmpA family N3114_01865 PF01618 MotA/TolQ/ExbB proton channel family N3114_01875 PF13603 Leucyl-tRNA synthetase, Domain 2 N3114_01875 PF00133 tRNA synthetases class I (I, L, M and V) N3114_01875 PF09334 tRNA synthetases class I (M) N3114_01885 PF08245 Mur ligase middle domain N3114_01915 PF02086 D12 class N6 adenine-specific DNA methyltransferase N3114_01925 PF04556 DpnII restriction endonuclease N3114_01940 PF01555 DNA methylase N3114_01945 PF03461 TRCF domain N3114_01945 PF17757 UvrB interaction domain N3114_01945 PF00270 DEAD/DEAH box helicase N3114_01945 PF02559 CarD-like/TRCF domain N3114_01945 PF00271 Helicase conserved C-terminal domain N3114_01965 PF00072 Response regulator receiver domain N3114_01965 PF00486 Transcriptional regulatory protein, C terminal N3114_01980 PF02743 Cache domain N3114_01980 PF00672 HAMP domain N3114_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_01985 PF00072 Response regulator receiver domain N3114_01985 PF02954 Bacterial regulatory protein, Fis family N3114_01985 PF00158 Sigma-54 interaction domain N3114_01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_01995 PF00512 His Kinase A (phospho-acceptor) domain N3114_01995 PF13426 PAS domain N3114_01995 PF00672 HAMP domain N3114_02000 PF13277 YmdB-like protein N3114_02015 PF01209 ubiE/COQ5 methyltransferase family N3114_02020 PF02601 Exonuclease VII, large subunit N3114_02020 PF13742 OB-fold nucleic acid binding domain N3114_02025 PF01584 CheW-like domain N3114_02030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N3114_02035 PF02261 Aspartate decarboxylase N3114_02040 PF02575 YbaB/EbfC DNA-binding family N3114_02045 PF00348 Polyprenyl synthetase N3114_02050 PF00166 Chaperonin 10 Kd subunit N3114_02055 PF00118 TCP-1/cpn60 chaperonin family N3114_02060 PF18719 ArlS sensor domain N3114_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_02060 PF00512 His Kinase A (phospho-acceptor) domain N3114_02065 PF00072 Response regulator receiver domain N3114_02065 PF00486 Transcriptional regulatory protein, C terminal N3114_02070 PF00149 Calcineurin-like phosphoesterase N3114_02095 PF00005 ABC transporter N3114_02110 PF00459 Inositol monophosphatase family N3114_02115 PF01380 SIS domain N3114_02120 PF02773 S-adenosylmethionine synthetase, C-terminal domain N3114_02120 PF00438 S-adenosylmethionine synthetase, N-terminal domain N3114_02120 PF02772 S-adenosylmethionine synthetase, central domain N3114_02125 PF17848 Acetyl-coA carboxylase zinc finger domain N3114_02125 PF01039 Carboxyl transferase domain N3114_02130 PF02581 Thiamine monophosphate synthase N3114_02135 PF02590 Predicted SPOUT methyltransferase N3114_02145 PF01207 Dihydrouridine synthase (Dus) N3114_02155 PF00004 ATPase family associated with various cellular activities (AAA) N3114_02155 PF17862 AAA+ lid domain N3114_02155 PF01434 Peptidase family M41 N3114_02180 PF00682 HMGL-like N3114_02180 PF08502 LeuA allosteric (dimerisation) domain N3114_02185 PF00085 Thioredoxin N3114_02195 PF01624 MutS domain I N3114_02195 PF05188 MutS domain II N3114_02195 PF05192 MutS domain III N3114_02195 PF05190 MutS family domain IV N3114_02195 PF00488 MutS domain V N3114_02215 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit N3114_02225 PF00005 ABC transporter N3114_02225 PF00664 ABC transporter transmembrane region N3114_02225 PF03412 Peptidase C39 family N3114_02235 PF01266 FAD dependent oxidoreductase N3114_02240 PF00990 Diguanylate cyclase, GGDEF domain N3114_02245 PF00977 Histidine biosynthesis protein N3114_02250 PF01370 NAD dependent epimerase/dehydratase family N3114_02250 PF08338 Domain of unknown function (DUF1731) N3114_02255 PF00117 Glutamine amidotransferase class-I N3114_02270 PF00679 Elongation factor G C-terminus N3114_02270 PF00009 Elongation factor Tu GTP binding domain N3114_02270 PF03144 Elongation factor Tu domain 2 N3114_02270 PF06421 GTP-binding protein LepA C-terminus N3114_02275 PF02583 Metal-sensitive transcriptional repressor N3114_02285 PF00403 Heavy-metal-associated domain N3114_02290 PF00691 OmpA family N3114_02290 PF05736 OprF membrane domain N3114_02295 PF14572 Phosphoribosyl synthetase-associated domain N3114_02295 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase N3114_02315 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) N3114_02320 PF00557 Metallopeptidase family M24 N3114_02320 PF01321 Creatinase/Prolidase N-terminal domain N3114_02325 PF01220 Dehydroquinase class II N3114_02330 PF01979 Amidohydrolase family N3114_02335 PF01343 Peptidase family S49 N3114_02340 PF00871 Acetokinase family N3114_02345 PF01515 Phosphate acetyl/butaryl transferase N3114_02350 PF00871 Acetokinase family N3114_02360 PF00871 Acetokinase family N3114_02365 PF00929 Exonuclease N3114_02365 PF02811 PHP domain N3114_02365 PF14579 Helix-hairpin-helix motif N3114_02365 PF11490 DNA polymerase III polC-type N-terminus II N3114_02365 PF07733 Bacterial DNA polymerase III alpha NTPase domain N3114_02365 PF14480 DNA polymerase III polC-type N-terminus I N3114_02365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N3114_02375 PF00474 Sodium:solute symporter family N3114_02385 PF00474 Sodium:solute symporter family N3114_02395 PF02811 PHP domain N3114_02395 PF00929 Exonuclease N3114_02395 PF07733 Bacterial DNA polymerase III alpha NTPase domain N3114_02395 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N3114_02395 PF14579 Helix-hairpin-helix motif N3114_02395 PF11490 DNA polymerase III polC-type N-terminus II N3114_02405 PF00474 Sodium:solute symporter family N3114_02415 PF00072 Response regulator receiver domain N3114_02415 PF00486 Transcriptional regulatory protein, C terminal N3114_02420 PF13426 PAS domain N3114_02420 PF00672 HAMP domain N3114_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_02420 PF00512 His Kinase A (phospho-acceptor) domain N3114_02465 PF18146 Damage-inducible protein CinA KH domain N3114_02465 PF00994 Probable molybdopterin binding domain N3114_02465 PF02464 Competence-damaged protein N3114_02470 PF06039 Malate:quinone oxidoreductase (Mqo) N3114_02475 PF08264 Anticodon-binding domain of tRNA N3114_02475 PF00133 tRNA synthetases class I (I, L, M and V) N3114_02490 PF08245 Mur ligase middle domain N3114_02490 PF02875 Mur ligase family, glutamate ligase domain N3114_02505 PF00248 Aldo/keto reductase family N3114_02510 PF01384 Phosphate transporter family N3114_02515 PF02203 Tar ligand binding domain homologue N3114_02515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_02515 PF00672 HAMP domain N3114_02525 PF00672 HAMP domain N3114_02525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_02525 PF02203 Tar ligand binding domain homologue N3114_02530 PF03061 Thioesterase superfamily N3114_02540 PF01435 Peptidase family M48 N3114_02540 PF16491 CAAX prenyl protease N-terminal, five membrane helices N3114_02545 PF02646 RmuC family N3114_02555 PF00994 Probable molybdopterin binding domain N3114_02555 PF03454 MoeA C-terminal region (domain IV) N3114_02555 PF03453 MoeA N-terminal region (domain I and II) N3114_02565 PF01171 PP-loop family N3114_02585 PF00318 Ribosomal protein S2 N3114_02590 PF00889 Elongation factor TS N3114_02595 PF00005 ABC transporter N3114_02605 PF00625 Guanylate kinase N3114_02610 PF00563 EAL domain N3114_02610 PF00990 Diguanylate cyclase, GGDEF domain N3114_02610 PF08448 PAS fold N3114_02615 PF00403 Heavy-metal-associated domain N3114_02630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N3114_02630 PF00005 ABC transporter N3114_02635 PF00762 Ferrochelatase N3114_02640 PF02421 Ferrous iron transport protein B N3114_02640 PF07670 Nucleoside recognition N3114_02640 PF07664 Ferrous iron transport protein B C terminus N3114_02650 PF02698 DUF218 domain N3114_02655 PF00005 ABC transporter N3114_02660 PF00950 ABC 3 transport family N3114_02665 PF17783 CvfB-like winged helix domain N3114_02665 PF13509 S1 domain N3114_02670 PF08534 Redoxin N3114_02690 PF00580 UvrD/REP helicase N-terminal domain N3114_02690 PF13361 UvrD-like helicase C-terminal domain N3114_02695 PF00999 Sodium/hydrogen exchanger family N3114_02695 PF02080 TrkA-C domain N3114_02695 PF02254 TrkA-N domain N3114_02700 PF10458 Valyl tRNA synthetase tRNA binding arm N3114_02700 PF08264 Anticodon-binding domain of tRNA N3114_02700 PF00133 tRNA synthetases class I (I, L, M and V) N3114_02705 PF09962 Uncharacterized conserved protein (DUF2196) N3114_02725 PF07690 Major Facilitator Superfamily N3114_02730 PF01725 Ham1 family N3114_02750 PF03807 NADP oxidoreductase coenzyme F420-dependent N3114_02750 PF14748 Pyrroline-5-carboxylate reductase dimerisation N3114_02755 PF13525 Outer membrane lipoprotein N3114_02760 PF00004 ATPase family associated with various cellular activities (AAA) N3114_02760 PF05362 Lon protease (S16) C-terminal proteolytic domain N3114_02760 PF02190 ATP-dependent protease La (LON) substrate-binding domain N3114_02770 PF01451 Low molecular weight phosphotyrosine protein phosphatase N3114_02775 PF01047 MarR family N3114_02785 PF13426 PAS domain N3114_02785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_02785 PF08447 PAS fold N3114_02805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N3114_02805 PF02785 Biotin carboxylase C-terminal domain N3114_02805 PF00289 Biotin carboxylase, N-terminal domain N3114_02810 PF01883 Iron-sulfur cluster assembly protein N3114_02815 PF02657 Fe-S metabolism associated domain N3114_02820 PF00266 Aminotransferase class-V N3114_02830 PF00005 ABC transporter N3114_02835 PF01458 Uncharacterized protein family (UPF0051) N3114_02840 PF00266 Aminotransferase class-V N3114_02845 PF01106 NifU-like domain N3114_02845 PF04324 BFD-like [2Fe-2S] binding domain N3114_02845 PF01592 NifU-like N terminal domain N3114_02855 PF07694 5TMR of 5TMR-LYT N3114_02855 PF00990 Diguanylate cyclase, GGDEF domain N3114_02860 PF00206 Lyase N3114_02860 PF14698 Argininosuccinate lyase C-terminal N3114_02865 PF00072 Response regulator receiver domain N3114_02865 PF01584 CheW-like domain N3114_02870 PF00899 ThiF family N3114_02875 PF03449 Transcription elongation factor, N-terminal N3114_02875 PF01272 Transcription elongation factor, GreA/GreB, C-term N3114_02885 PF00271 Helicase conserved C-terminal domain N3114_02885 PF04851 Type III restriction enzyme, res subunit N3114_02885 PF02151 UvrB/uvrC motif N3114_02885 PF12344 Ultra-violet resistance protein B N3114_02885 PF17757 UvrB interaction domain N3114_02890 PF00672 HAMP domain N3114_02890 PF02203 Tar ligand binding domain homologue N3114_02890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_02895 PF10576 Iron-sulfur binding domain of endonuclease III N3114_02895 PF00633 Helix-hairpin-helix motif N3114_02895 PF00730 HhH-GPD superfamily base excision DNA repair protein N3114_02915 PF02203 Tar ligand binding domain homologue N3114_02915 PF00672 HAMP domain N3114_02915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_02925 PF01695 IstB-like ATP binding protein N3114_02930 PF00665 Integrase core domain N3114_02950 PF02502 Ribose/Galactose Isomerase N3114_02955 PF10502 Signal peptidase, peptidase S26 N3114_02960 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain N3114_02960 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain N3114_02965 PF14693 Ribosomal protein TL5, C-terminal domain N3114_02965 PF01386 Ribosomal L25p family N3114_02970 PF01195 Peptidyl-tRNA hydrolase N3114_02985 PF01520 N-acetylmuramoyl-L-alanine amidase N3114_02995 PF01479 S4 domain N3114_02995 PF00579 tRNA synthetases class I (W and Y) N3114_03000 PF13291 ACT domain N3114_03000 PF04607 Region found in RelA / SpoT proteins N3114_03000 PF02824 TGS domain N3114_03005 PF01192 RNA polymerase Rpb6 N3114_03010 PF00696 Amino acid kinase family N3114_03020 PF04166 Pyridoxal phosphate biosynthetic protein PdxA N3114_03025 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ N3114_03030 PF04715 Anthranilate synthase component I, N terminal region N3114_03030 PF00425 chorismate binding enzyme N3114_03040 PF00464 Serine hydroxymethyltransferase N3114_03045 PF00152 tRNA synthetases class II (D, K and N) N3114_03045 PF01336 OB-fold nucleic acid binding domain N3114_03055 PF04551 GcpE protein N3114_03060 PF00990 Diguanylate cyclase, GGDEF domain N3114_03065 PF00772 DnaB-like helicase N terminal domain N3114_03065 PF03796 DnaB-like helicase C terminal domain N3114_03075 PF02350 UDP-N-acetylglucosamine 2-epimerase N3114_03080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain N3114_03080 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain N3114_03080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain N3114_03085 PF08240 Alcohol dehydrogenase GroES-like domain N3114_03085 PF00107 Zinc-binding dehydrogenase N3114_03150 PF00733 Asparagine synthase N3114_03150 PF13537 Glutamine amidotransferase domain N3114_03170 PF08240 Alcohol dehydrogenase GroES-like domain N3114_03170 PF00107 Zinc-binding dehydrogenase N3114_03185 PF01370 NAD dependent epimerase/dehydratase family N3114_03190 PF00953 Glycosyl transferase family 4 N3114_03195 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase N3114_03200 PF02719 Polysaccharide biosynthesis protein N3114_03210 PF14743 DNA ligase OB-like domain N3114_03210 PF01068 ATP dependent DNA ligase domain N3114_03215 PF00156 Phosphoribosyl transferase domain N3114_03220 PF00291 Pyridoxal-phosphate dependent enzyme N3114_03230 PF00883 Cytosol aminopeptidase family, catalytic domain N3114_03230 PF02789 Cytosol aminopeptidase family, N-terminal domain N3114_03240 PF02472 Biopolymer transport protein ExbD/TolR N3114_03245 PF01618 MotA/TolQ/ExbB proton channel family N3114_03260 PF00005 ABC transporter N3114_03260 PF02687 FtsX-like permease family N3114_03260 PF12704 MacB-like periplasmic core domain N3114_03265 PF02687 FtsX-like permease family N3114_03265 PF12704 MacB-like periplasmic core domain N3114_03265 PF00005 ABC transporter N3114_03310 PF01475 Ferric uptake regulator family N3114_03320 PF10415 Fumarase C C-terminus N3114_03320 PF00206 Lyase N3114_03330 PF13581 Histidine kinase-like ATPase domain N3114_03330 PF07568 Histidine kinase N3114_03330 PF13426 PAS domain N3114_03335 PF00072 Response regulator receiver domain N3114_03340 PF00593 TonB dependent receptor N3114_03340 PF07715 TonB-dependent Receptor Plug Domain N3114_03345 PF13640 2OG-Fe(II) oxygenase superfamily N3114_03345 PF18331 PKHD-type hydroxylase C-terminal domain N3114_03350 PF01070 FMN-dependent dehydrogenase N3114_03355 PF07715 TonB-dependent Receptor Plug Domain N3114_03355 PF00593 TonB dependent receptor N3114_03375 PF13722 5TM C-terminal transporter carbon starvation CstA N3114_03375 PF02554 Carbon starvation protein CstA N3114_03450 PF12161 HsdM N-terminal domain N3114_03450 PF02384 N-6 DNA Methylase N3114_03475 PF12008 Type I restriction and modification enzyme - subunit R C terminal N3114_03475 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) N3114_03475 PF18766 SWI2/SNF2 ATPase N3114_03480 PF13614 AAA domain N3114_03495 PF00239 Resolvase, N terminal domain N3114_03495 PF02796 Helix-turn-helix domain of resolvase N3114_03505 PF00589 Phage integrase family N3114_03505 PF02899 Phage integrase, N-terminal SAM-like domain N3114_03510 PF08803 Putative mono-oxygenase ydhR N3114_03515 PF01047 MarR family N3114_03520 PF01695 IstB-like ATP binding protein N3114_03525 PF00665 Integrase core domain N3114_03530 PF01076 Plasmid recombination enzyme N3114_03565 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) N3114_03570 PF00398 Ribosomal RNA adenine dimethylase N3114_03590 PF08241 Methyltransferase domain N3114_03595 PF04439 Streptomycin adenylyltransferase N3114_03600 PF00583 Acetyltransferase (GNAT) family N3114_03605 PF01636 Phosphotransferase enzyme family N3114_03610 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) N3114_03615 PF00398 Ribosomal RNA adenine dimethylase N3114_03620 PF00665 Integrase core domain N3114_03625 PF01695 IstB-like ATP binding protein N3114_03715 PF01926 50S ribosome-binding GTPase N3114_03715 PF06071 Protein of unknown function (DUF933) N3114_03735 PF06865 Pyrimidine/purine nucleoside phosphorylase N3114_03745 PF00586 AIR synthase related protein, N-terminal domain N3114_03745 PF02769 AIR synthase related protein, C-terminal domain N3114_03750 PF01142 tRNA pseudouridine synthase D (TruD) N3114_03760 PF02203 Tar ligand binding domain homologue N3114_03760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_03760 PF00672 HAMP domain N3114_03765 PF01330 RuvA N terminal domain N3114_03765 PF07499 RuvA, C-terminal domain N3114_03770 PF01820 D-ala D-ala ligase N-terminus N3114_03770 PF07478 D-ala D-ala ligase C-terminus N3114_03780 PF02875 Mur ligase family, glutamate ligase domain N3114_03780 PF08245 Mur ligase middle domain N3114_03785 PF01230 HIT domain N3114_03795 PF00338 Ribosomal protein S10p/S20e N3114_03800 PF00297 Ribosomal protein L3 N3114_03805 PF00573 Ribosomal protein L4/L1 family N3114_03810 PF00276 Ribosomal protein L23 N3114_03815 PF03947 Ribosomal Proteins L2, C-terminal domain N3114_03815 PF00181 Ribosomal Proteins L2, RNA binding domain N3114_03820 PF00203 Ribosomal protein S19 N3114_03825 PF00237 Ribosomal protein L22p/L17e N3114_03830 PF07650 KH domain N3114_03830 PF00189 Ribosomal protein S3, C-terminal domain N3114_03835 PF00252 Ribosomal protein L16p/L10e N3114_03840 PF00831 Ribosomal L29 protein N3114_03845 PF00366 Ribosomal protein S17 N3114_03850 PF00238 Ribosomal protein L14p/L23e N3114_03855 PF00467 KOW motif N3114_03855 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 N3114_03860 PF00281 Ribosomal protein L5 N3114_03860 PF00673 ribosomal L5P family C-terminus N3114_03865 PF00253 Ribosomal protein S14p/S29e N3114_03870 PF00410 Ribosomal protein S8 N3114_03875 PF00347 Ribosomal protein L6 N3114_03880 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast N3114_03885 PF00333 Ribosomal protein S5, N-terminal domain N3114_03885 PF03719 Ribosomal protein S5, C-terminal domain N3114_03890 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A N3114_03895 PF00344 SecY translocase N3114_03900 PF00557 Metallopeptidase family M24 N3114_03905 PF01176 Translation initiation factor 1A / IF-1 N3114_03910 PF03167 Uracil DNA glycosylase superfamily N3114_03920 PF00152 tRNA synthetases class II (D, K and N) N3114_03920 PF02938 GAD domain N3114_03920 PF01336 OB-fold nucleic acid binding domain N3114_03930 PF08497 Radical SAM N-terminal N3114_03930 PF04055 Radical SAM superfamily N3114_03935 PF05191 Adenylate kinase, active site lid N3114_03950 PF00107 Zinc-binding dehydrogenase N3114_03950 PF08240 Alcohol dehydrogenase GroES-like domain N3114_03955 PF00465 Iron-containing alcohol dehydrogenase N3114_03960 PF02203 Tar ligand binding domain homologue N3114_03960 PF00672 HAMP domain N3114_03960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_03965 PF00842 Alanine racemase, C-terminal domain N3114_03965 PF01168 Alanine racemase, N-terminal domain N3114_03970 PF02151 UvrB/uvrC motif N3114_03970 PF08459 UvrC Helix-hairpin-helix N-terminal N3114_03970 PF01541 GIY-YIG catalytic domain N3114_03975 PF02203 Tar ligand binding domain homologue N3114_03975 PF00672 HAMP domain N3114_03975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_03980 PF00072 Response regulator receiver domain N3114_03980 PF00486 Transcriptional regulatory protein, C terminal N3114_03985 PF00990 Diguanylate cyclase, GGDEF domain N3114_03985 PF00072 Response regulator receiver domain N3114_03990 PF09308 LuxQ, periplasmic N3114_03990 PF00512 His Kinase A (phospho-acceptor) domain N3114_03990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_03990 PF00072 Response regulator receiver domain N3114_03995 PF00293 NUDIX domain N3114_03995 PF13344 Haloacid dehalogenase-like hydrolase N3114_04020 PF02653 Branched-chain amino acid transport system / permease component N3114_04030 PF12399 Branched-chain amino acid ATP-binding cassette transporter N3114_04030 PF00005 ABC transporter N3114_04035 PF00005 ABC transporter N3114_04045 PF01774 UreD urease accessory protein N3114_04050 PF00699 Urease beta subunit N3114_04050 PF00547 Urease, gamma subunit N3114_04055 PF01979 Amidohydrolase family N3114_04055 PF00449 Urease alpha-subunit, N-terminal domain N3114_04060 PF05194 UreE urease accessory protein, C-terminal domain N3114_04070 PF02492 CobW/HypB/UreG, nucleotide-binding domain N3114_04075 PF00873 AcrB/AcrD/AcrF family N3114_04080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3114_04080 PF00529 HlyD membrane-fusion protein of T1SS N3114_04110 PF03372 Endonuclease/Exonuclease/phosphatase family N3114_04130 PF08212 Lipocalin-like domain N3114_04145 PF03109 ABC1 family N3114_04155 PF00563 EAL domain N3114_04155 PF12792 CSS motif domain associated with EAL N3114_04160 PF00072 Response regulator receiver domain N3114_04160 PF04397 LytTr DNA-binding domain N3114_04165 PF07694 5TMR of 5TMR-LYT N3114_04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_04165 PF06580 Histidine kinase N3114_04165 PF13492 GAF domain N3114_04170 PF01593 Flavin containing amine oxidoreductase N3114_04175 PF03441 FAD binding domain of DNA photolyase N3114_04175 PF00875 DNA photolyase N3114_04195 PF00342 Phosphoglucose isomerase N3114_04200 PF00483 Nucleotidyl transferase N3114_04205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N3114_04205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N3114_04205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N3114_04205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N3114_04235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_04235 PF02203 Tar ligand binding domain homologue N3114_04235 PF00672 HAMP domain N3114_04240 PF08447 PAS fold N3114_04240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_04245 PF01361 Tautomerase enzyme N3114_04250 PF03466 LysR substrate binding domain N3114_04250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3114_04255 PF00218 Indole-3-glycerol phosphate synthase N3114_04265 PF03692 Putative zinc- or iron-chelating domain N3114_04270 PF05175 Methyltransferase small domain N3114_04280 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg N3114_04280 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase N3114_04280 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II N3114_04285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N3114_04295 PF14480 DNA polymerase III polC-type N-terminus I N3114_04295 PF11490 DNA polymerase III polC-type N-terminus II N3114_04295 PF07733 Bacterial DNA polymerase III alpha NTPase domain N3114_04295 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N3114_04295 PF14579 Helix-hairpin-helix motif N3114_04295 PF02811 PHP domain N3114_04295 PF00929 Exonuclease N3114_04300 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase N3114_04305 PF00834 Ribulose-phosphate 3 epimerase family N3114_04310 PF02253 Phospholipase A1 N3114_04320 PF00293 NUDIX domain N3114_04325 PF04461 Protein of unknown function (DUF520) N3114_04335 PF04241 Protein of unknown function (DUF423) N3114_04340 PF00156 Phosphoribosyl transferase domain N3114_04355 PF01168 Alanine racemase, N-terminal domain N3114_04360 PF17820 PDZ domain N3114_04360 PF02163 Peptidase family M50 N3114_04365 PF01066 CDP-alcohol phosphatidyltransferase N3114_04375 PF00701 Dihydrodipicolinate synthetase family N3114_04385 PF01180 Dihydroorotate dehydrogenase N3114_04390 PF00664 ABC transporter transmembrane region N3114_04390 PF00005 ABC transporter N3114_04395 PF03023 Lipid II flippase MurJ N3114_04410 PF02130 Uncharacterized protein family UPF0054 N3114_04420 PF18073 Rubredoxin metal binding domain N3114_04425 PF05728 Uncharacterised protein family (UPF0227) N3114_04435 PF00448 SRP54-type protein, GTPase domain N3114_04440 PF00578 AhpC/TSA family N3114_04445 PF01812 5-formyltetrahydrofolate cyclo-ligase family N3114_04450 PF01966 HD domain N3114_04450 PF12072 Domain of unknown function (DUF3552) N3114_04450 PF00013 KH domain N3114_04460 PF00528 Binding-protein-dependent transport system inner membrane component N3114_04460 PF12911 N-terminal TM domain of oligopeptide transport permease C N3114_04480 PF00106 short chain dehydrogenase N3114_04495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N3114_04505 PF00486 Transcriptional regulatory protein, C terminal N3114_04505 PF00072 Response regulator receiver domain N3114_04510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_04515 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain N3114_04515 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain N3114_04520 PF00990 Diguanylate cyclase, GGDEF domain N3114_04525 PF09424 Yqey-like protein N3114_04530 PF00005 ABC transporter N3114_04530 PF16326 ABC transporter C-terminal domain N3114_04530 PF12848 ABC transporter N3114_04540 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3114_04545 PF00561 alpha/beta hydrolase fold N3114_04560 PF01042 Endoribonuclease L-PSP N3114_04575 PF02696 Uncharacterized ACR, YdiU/UPF0061 family N3114_04585 PF00117 Glutamine amidotransferase class-I N3114_04585 PF00958 GMP synthase C terminal domain N3114_04585 PF02540 NAD synthase N3114_04590 PF00890 FAD binding domain N3114_04600 PF01863 Protein of unknown function DUF45 N3114_04605 PF00155 Aminotransferase class I and II N3114_04610 PF01545 Cation efflux family N3114_04610 PF16916 Dimerisation domain of Zinc Transporter N3114_04615 PF00072 Response regulator receiver domain N3114_04615 PF01966 HD domain N3114_04620 PF00211 Adenylate and Guanylate cyclase catalytic domain N3114_04630 PF01695 IstB-like ATP binding protein N3114_04635 PF00665 Integrase core domain N3114_04660 PF03062 MBOAT, membrane-bound O-acyltransferase family N3114_04670 PF07690 Major Facilitator Superfamily N3114_04680 PF01891 Cobalt uptake substrate-specific transmembrane region N3114_04680 PF13190 PDGLE domain N3114_04695 PF00005 ABC transporter N3114_04725 PF01594 AI-2E family transporter N3114_04750 PF17760 UvrA interaction domain N3114_04750 PF17755 UvrA DNA-binding domain N3114_04760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_04760 PF08447 PAS fold N3114_04770 PF01925 Sulfite exporter TauE/SafE N3114_04775 PF06426 Serine acetyltransferase, N-terminal N3114_04775 PF00132 Bacterial transferase hexapeptide (six repeats) N3114_04780 PF17944 Arginine decarboxylase C-terminal helical extension N3114_04780 PF17810 Arginine decarboxylase helical bundle domain N3114_04780 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N3114_04785 PF03129 Anticodon binding domain N3114_04785 PF13393 Histidyl-tRNA synthetase N3114_04790 PF02223 Thymidylate kinase N3114_04795 PF01467 Cytidylyltransferase-like N3114_04800 PF02441 Flavoprotein N3114_04810 PF03948 Ribosomal protein L9, C-terminal domain N3114_04810 PF01281 Ribosomal protein L9, N-terminal domain N3114_04815 PF00227 Proteasome subunit N3114_04820 PF07724 AAA domain (Cdc48 subfamily) N3114_04820 PF10431 C-terminal, D2-small domain, of ClpB protein N3114_04830 PF01026 TatD related DNase N3114_04840 PF03330 Lytic transglycolase N3114_04840 PF05036 Sporulation related domain N3114_04845 PF00475 Imidazoleglycerol-phosphate dehydratase N3114_04865 PF01926 50S ribosome-binding GTPase N3114_04870 PF00583 Acetyltransferase (GNAT) family N3114_04875 PF04542 Sigma-70 region 2 N3114_04875 PF08281 Sigma-70, region 4 N3114_04890 PF01118 Semialdehyde dehydrogenase, NAD binding domain N3114_04895 PF00155 Aminotransferase class I and II N3114_04895 PF00392 Bacterial regulatory proteins, gntR family N3114_04910 PF00873 AcrB/AcrD/AcrF family N3114_04915 PF00873 AcrB/AcrD/AcrF family N3114_04920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3114_04930 PF11849 Domain of unknown function (DUF3369) N3114_04935 PF00813 FliP family N3114_04940 PF03717 Penicillin-binding Protein dimerisation domain N3114_04940 PF00905 Penicillin binding protein transpeptidase domain N3114_04960 PF00005 ABC transporter N3114_04965 PF02390 Putative methyltransferase N3114_04970 PF00128 Alpha amylase, catalytic domain N3114_04970 PF02903 Alpha amylase, N-terminal ig-like domain N3114_04975 PF00849 RNA pseudouridylate synthase N3114_04975 PF01479 S4 domain N3114_04980 PF01098 Cell cycle protein N3114_04990 PF00202 Aminotransferase class-III N3114_04995 PF06865 Pyrimidine/purine nucleoside phosphorylase N3114_05015 PF00140 Sigma-70 factor, region 1.2 N3114_05015 PF04542 Sigma-70 region 2 N3114_05015 PF04539 Sigma-70 region 3 N3114_05015 PF04545 Sigma-70, region 4 N3114_05020 PF00694 Aconitase C-terminal domain N3114_05025 PF00180 Isocitrate/isopropylmalate dehydrogenase N3114_05040 PF00444 Ribosomal protein L36 N3114_05045 PF00416 Ribosomal protein S13/S18 N3114_05050 PF00411 Ribosomal protein S11 N3114_05055 PF00163 Ribosomal protein S4/S9 N-terminal domain N3114_05055 PF01479 S4 domain N3114_05060 PF01000 RNA polymerase Rpb3/RpoA insert domain N3114_05060 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain N3114_05060 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain N3114_05065 PF01196 Ribosomal protein L17 N3114_05070 PF01425 Amidase N3114_05075 PF00571 CBS domain N3114_05075 PF00478 IMP dehydrogenase / GMP reductase domain N3114_05090 PF00226 DnaJ domain N3114_05090 PF01556 DnaJ C terminal domain N3114_05090 PF00684 DnaJ central domain N3114_05100 PF00933 Glycosyl hydrolase family 3 N terminal domain N3114_05100 PF01915 Glycosyl hydrolase family 3 C-terminal domain N3114_05105 PF00005 ABC transporter N3114_05110 PF08240 Alcohol dehydrogenase GroES-like domain N3114_05110 PF00107 Zinc-binding dehydrogenase N3114_05130 PF01638 HxlR-like helix-turn-helix N3114_05135 PF02525 Flavodoxin-like fold N3114_05145 PF00893 Small Multidrug Resistance protein N3114_05170 PF01161 Phosphatidylethanolamine-binding protein N3114_05175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3114_05175 PF03466 LysR substrate binding domain N3114_05180 PF03601 Conserved hypothetical protein 698 N3114_05190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N3114_05190 PF02770 Acyl-CoA dehydrogenase, middle domain N3114_05190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N3114_05210 PF01638 HxlR-like helix-turn-helix N3114_05215 PF02525 Flavodoxin-like fold N3114_05225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N3114_05235 PF00881 Nitroreductase family N3114_05245 PF00005 ABC transporter N3114_05245 PF12848 ABC transporter N3114_05250 PF03061 Thioesterase superfamily N3114_05255 PF02203 Tar ligand binding domain homologue N3114_05255 PF00672 HAMP domain N3114_05255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_05260 PF03120 NAD-dependent DNA ligase OB-fold domain N3114_05260 PF12826 Helix-hairpin-helix motif N3114_05260 PF01653 NAD-dependent DNA ligase adenylation domain N3114_05260 PF00533 BRCA1 C Terminus (BRCT) domain N3114_05265 PF03738 Glutathionylspermidine synthase preATP-grasp N3114_05275 PF13286 Phosphohydrolase-associated domain N3114_05275 PF01966 HD domain N3114_05285 PF00589 Phage integrase family N3114_05285 PF02899 Phage integrase, N-terminal SAM-like domain N3114_05360 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) N3114_05390 PF08275 DNA primase catalytic core, N-terminal domain N3114_05390 PF01807 CHC2 zinc finger N3114_05485 PF00990 Diguanylate cyclase, GGDEF domain N3114_05485 PF10442 FIST C domain N3114_05485 PF08495 FIST N domain N3114_05485 PF00563 EAL domain N3114_05495 PF00565 Staphylococcal nuclease homologue N3114_05570 PF01979 Amidohydrolase family N3114_05575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N3114_05580 PF07827 KNTase C-terminal domain N3114_05585 PF01979 Amidohydrolase family N3114_05590 PF07690 Major Facilitator Superfamily N3114_05595 PF01979 Amidohydrolase family N3114_05600 PF01909 Nucleotidyltransferase domain N3114_05600 PF13427 Domain of unknown function (DUF4111) N3114_05605 PF01979 Amidohydrolase family N3114_05610 PF01261 Xylose isomerase-like TIM barrel N3114_05615 PF02321 Outer membrane efflux protein N3114_05620 PF00873 AcrB/AcrD/AcrF family N3114_05625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3114_05625 PF00529 HlyD membrane-fusion protein of T1SS N3114_05630 PF01979 Amidohydrolase family N3114_05650 PF06616 BsuBI/PstI restriction endonuclease domain N3114_05650 PF17728 BsuBI/PstI restriction endonuclease HTH domain N3114_05655 PF07669 Eco57I restriction-modification methylase N3114_05675 PF00580 UvrD/REP helicase N-terminal domain N3114_05675 PF13361 UvrD-like helicase C-terminal domain N3114_05740 PF03743 Bacterial conjugation TrbI-like protein N3114_05775 PF06834 TraU protein N3114_05835 PF00589 Phage integrase family N3114_05835 PF02899 Phage integrase, N-terminal SAM-like domain N3114_05850 PF08501 Shikimate dehydrogenase substrate binding domain N3114_05860 PF02578 Multi-copper polyphenol oxidoreductase laccase N3114_05865 PF00390 Malic enzyme, N-terminal domain N3114_05865 PF03949 Malic enzyme, NAD binding domain N3114_05865 PF01515 Phosphate acetyl/butaryl transferase N3114_05870 PF01842 ACT domain N3114_05870 PF00551 Formyl transferase N3114_05875 PF00588 SpoU rRNA Methylase family N3114_05900 PF00072 Response regulator receiver domain N3114_05900 PF00486 Transcriptional regulatory protein, C terminal N3114_05910 PF01145 SPFH domain / Band 7 family N3114_05910 PF16200 C-terminal region of band_7 N3114_05935 PF03588 Leucyl/phenylalanyl-tRNA protein transferase N3114_05940 PF01479 S4 domain N3114_05940 PF00849 RNA pseudouridylate synthase N3114_05945 PF13419 Haloacid dehalogenase-like hydrolase N3114_05965 PF07715 TonB-dependent Receptor Plug Domain N3114_05965 PF00593 TonB dependent receptor N3114_05975 PF00005 ABC transporter N3114_05980 PF01032 FecCD transport family N3114_05985 PF00300 Histidine phosphatase superfamily (branch 1) N3114_05990 PF00005 ABC transporter N3114_05990 PF00664 ABC transporter transmembrane region N3114_06000 PF00072 Response regulator receiver domain N3114_06000 PF00486 Transcriptional regulatory protein, C terminal N3114_06005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_06030 PF00270 DEAD/DEAH box helicase N3114_06030 PF00271 Helicase conserved C-terminal domain N3114_06035 PF08448 PAS fold N3114_06035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_06035 PF08447 PAS fold N3114_06040 PF00072 Response regulator receiver domain N3114_06040 PF00486 Transcriptional regulatory protein, C terminal N3114_06045 PF00691 OmpA family N3114_06045 PF05736 OprF membrane domain N3114_06050 PF00664 ABC transporter transmembrane region N3114_06050 PF00005 ABC transporter N3114_06050 PF03412 Peptidase C39 family N3114_06060 PF00196 Bacterial regulatory proteins, luxR family N3114_06060 PF00072 Response regulator receiver domain N3114_06075 PF01761 3-dehydroquinate synthase N3114_06085 PF04055 Radical SAM superfamily N3114_06085 PF00919 Uncharacterized protein family UPF0004 N3114_06090 PF00004 ATPase family associated with various cellular activities (AAA) N3114_06090 PF17862 AAA+ lid domain N3114_06090 PF06480 FtsH Extracellular N3114_06090 PF01434 Peptidase family M41 N3114_06100 PF00994 Probable molybdopterin binding domain N3114_06105 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase N3114_06110 PF13673 Acetyltransferase (GNAT) domain N3114_06150 PF18364 Molybdopterin oxidoreductase N-terminal domain N3114_06150 PF01568 Molydopterin dinucleotide binding domain N3114_06150 PF00384 Molybdopterin oxidoreductase N3114_06155 PF16925 Tetracyclin repressor-like, C-terminal domain N3114_06155 PF00440 Bacterial regulatory proteins, tetR family N3114_06160 PF00488 MutS domain V N3114_06160 PF01713 Smr domain N3114_06165 PF01595 Cyclin M transmembrane N-terminal domain N3114_06165 PF00571 CBS domain N3114_06165 PF03471 Transporter associated domain N3114_06175 PF07687 Peptidase dimerisation domain N3114_06175 PF01546 Peptidase family M20/M25/M40 N3114_06180 PF00909 Ammonium Transporter Family N3114_06185 PF00543 Nitrogen regulatory protein P-II N3114_06195 PF02541 Ppx/GppA phosphatase family N3114_06205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N3114_06205 PF00205 Thiamine pyrophosphate enzyme, central domain N3114_06205 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N3114_06210 PF10369 Small subunit of acetolactate synthase N3114_06215 PF00132 Bacterial transferase hexapeptide (six repeats) N3114_06215 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD N3114_06220 PF17854 FtsK alpha domain N3114_06220 PF01580 FtsK/SpoIIIE family N3114_06220 PF09397 Ftsk gamma domain N3114_06225 PF00072 Response regulator receiver domain N3114_06225 PF00486 Transcriptional regulatory protein, C terminal N3114_06245 PF02810 SEC-C motif N3114_06245 PF07517 SecA DEAD-like domain N3114_06245 PF01043 SecA preprotein cross-linking domain N3114_06245 PF07516 SecA Wing and Scaffold domain N3114_06250 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein N3114_06255 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal N3114_06255 PF01926 50S ribosome-binding GTPase N3114_06260 PF01740 STAS domain N3114_06260 PF00916 Sulfate permease family N3114_06270 PF02843 Phosphoribosylglycinamide synthetase, C domain N3114_06270 PF02844 Phosphoribosylglycinamide synthetase, N domain N3114_06270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain N3114_06280 PF03968 OstA-like protein N3114_06280 PF04453 LPS transport system D N3114_06290 PF00013 KH domain N3114_06290 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain N3114_06290 PF01138 3' exoribonuclease family, domain 1 N3114_06290 PF03725 3' exoribonuclease family, domain 2 N3114_06290 PF00575 S1 RNA binding domain N3114_06295 PF00072 Response regulator receiver domain N3114_06300 PF01584 CheW-like domain N3114_06300 PF09078 CheY binding N3114_06300 PF02895 Signal transducing histidine kinase, homodimeric domain N3114_06300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_06300 PF01627 Hpt domain N3114_06305 PF01739 CheR methyltransferase, SAM binding domain N3114_06305 PF03705 CheR methyltransferase, all-alpha domain N3114_06310 PF03975 CheD chemotactic sensory transduction N3114_06315 PF01339 CheB methylesterase N3114_06315 PF00072 Response regulator receiver domain N3114_06325 PF07690 Major Facilitator Superfamily N3114_06330 PF18644 Phage integrase SAM-like domain N3114_06330 PF00589 Phage integrase family N3114_06350 PF01432 Peptidase family M3 N3114_06355 PF05175 Methyltransferase small domain N3114_06355 PF17827 PrmC N-terminal domain N3114_06360 PF04055 Radical SAM superfamily N3114_06360 PF06969 HemN C-terminal domain N3114_06365 PF00293 NUDIX domain N3114_06370 PF01842 ACT domain N3114_06370 PF00696 Amino acid kinase family N3114_06370 PF13840 ACT domain N3114_06385 PF00809 Pterin binding enzyme N3114_06390 PF02153 Prephenate dehydrogenase N3114_06390 PF01842 ACT domain N3114_06395 PF07244 Surface antigen variable number repeat N3114_06395 PF01103 Surface antigen N3114_06400 PF04055 Radical SAM superfamily N3114_06405 PF05193 Peptidase M16 inactive domain N3114_06410 PF00749 tRNA synthetases class I (E and Q), catalytic domain N3114_06435 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain N3114_06445 PF00133 tRNA synthetases class I (I, L, M and V) N3114_06445 PF09334 tRNA synthetases class I (M) N3114_06445 PF01588 Putative tRNA binding domain N3114_06465 PF02436 Conserved carboxylase domain N3114_06465 PF00682 HMGL-like N3114_06470 PF01293 Phosphoenolpyruvate carboxykinase N3114_06475 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase N3114_06475 PF00925 GTP cyclohydrolase II N3114_06495 PF02092 Glycyl-tRNA synthetase beta subunit N3114_06510 PF02069 Prokaryotic metallothionein N3114_06515 PF02527 rRNA small subunit methyltransferase G N3114_06520 PF00925 GTP cyclohydrolase II N3114_06525 PF00490 Delta-aminolevulinic acid dehydratase N3114_06530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_06530 PF00512 His Kinase A (phospho-acceptor) domain N3114_06540 PF00072 Response regulator receiver domain N3114_06540 PF00486 Transcriptional regulatory protein, C terminal N3114_06555 PF03477 ATP cone domain N3114_06555 PF02867 Ribonucleotide reductase, barrel domain N3114_06555 PF00317 Ribonucleotide reductase, all-alpha domain N3114_06560 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N3114_06560 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N3114_06565 PF04055 Radical SAM superfamily N3114_06565 PF06969 HemN C-terminal domain N3114_06575 PF02606 Tetraacyldisaccharide-1-P 4'-kinase N3114_06580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N3114_06585 PF02540 NAD synthase N3114_06600 PF05099 Tellurite resistance protein TerB N3114_06600 PF00226 DnaJ domain N3114_06610 PF00902 Sec-independent protein translocase protein (TatC) N3114_06615 PF02547 Queuosine biosynthesis protein N3114_06620 PF00929 Exonuclease N3114_06630 PF07715 TonB-dependent Receptor Plug Domain N3114_06630 PF00593 TonB dependent receptor N3114_06645 PF03781 Sulfatase-modifying factor enzyme 1 N3114_06645 PF12867 DinB superfamily N3114_06665 PF02665 Nitrate reductase gamma subunit N3114_06665 PF13183 4Fe-4S dicluster domain N3114_06665 PF02754 Cysteine-rich domain N3114_06670 PF01790 Prolipoprotein diacylglyceryl transferase N3114_06685 PF01367 5'-3' exonuclease, C-terminal SAM fold N3114_06685 PF00476 DNA polymerase family A N3114_06685 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N3114_06685 PF01612 3'-5' exonuclease N3114_06690 PF02348 Cytidylyltransferase N3114_06695 PF00563 EAL domain N3114_06695 PF08495 FIST N domain N3114_06695 PF10442 FIST C domain N3114_06695 PF00990 Diguanylate cyclase, GGDEF domain N3114_06700 PF00005 ABC transporter N3114_06700 PF12399 Branched-chain amino acid ATP-binding cassette transporter N3114_06705 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE N3114_06710 PF00591 Glycosyl transferase family, a/b domain N3114_06710 PF02885 Glycosyl transferase family, helical bundle domain N3114_06725 PF00764 Arginosuccinate synthase N3114_06730 PF00501 AMP-binding enzyme N3114_06730 PF13193 AMP-binding enzyme C-terminal domain N3114_06735 PF03062 MBOAT, membrane-bound O-acyltransferase family N3114_06750 PF00550 Phosphopantetheine attachment site N3114_06755 PF00132 Bacterial transferase hexapeptide (six repeats) N3114_06760 PF02080 TrkA-C domain N3114_06760 PF02254 TrkA-N domain N3114_06765 PF02386 Cation transport protein N3114_06770 PF00072 Response regulator receiver domain N3114_06770 PF00486 Transcriptional regulatory protein, C terminal N3114_06775 PF00512 His Kinase A (phospho-acceptor) domain N3114_06775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_06775 PF13493 Domain of unknown function (DUF4118) N3114_06775 PF02702 Osmosensitive K+ channel His kinase sensor domain N3114_06790 PF02132 RecR protein N3114_06790 PF13662 Toprim domain N3114_06795 PF00226 DnaJ domain N3114_06795 PF01556 DnaJ C terminal domain N3114_06795 PF00684 DnaJ central domain N3114_06800 PF00291 Pyridoxal-phosphate dependent enzyme N3114_06820 PF00753 Metallo-beta-lactamase superfamily N3114_06830 PF00990 Diguanylate cyclase, GGDEF domain N3114_06835 PF08003 Protein of unknown function (DUF1698) N3114_06845 PF01578 Cytochrome C assembly protein N3114_06845 PF05140 ResB-like family N3114_06850 PF07687 Peptidase dimerisation domain N3114_06850 PF01546 Peptidase family M20/M25/M40 N3114_06860 PF02203 Tar ligand binding domain homologue N3114_06860 PF00672 HAMP domain N3114_06860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_06875 PF07516 SecA Wing and Scaffold domain N3114_06875 PF00271 Helicase conserved C-terminal domain N3114_06875 PF02810 SEC-C motif N3114_06875 PF01043 SecA preprotein cross-linking domain N3114_06875 PF07517 SecA DEAD-like domain N3114_06880 PF02687 FtsX-like permease family N3114_06880 PF12704 MacB-like periplasmic core domain N3114_06890 PF02618 YceG-like family N3114_06895 PF03971 Monomeric isocitrate dehydrogenase N3114_06900 PF00056 lactate/malate dehydrogenase, NAD binding domain N3114_06900 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain N3114_06915 PF01695 IstB-like ATP binding protein N3114_06920 PF00665 Integrase core domain N3114_06935 PF01795 MraW methylase family N3114_06945 PF00216 Bacterial DNA-binding protein N3114_06955 PF02082 Transcriptional regulator N3114_06960 PF00115 Cytochrome C and Quinol oxidase polypeptide I N3114_06980 PF01266 FAD dependent oxidoreductase N3114_06980 PF05430 S-adenosyl-L-methionine-dependent methyltransferase N3114_06990 PF00072 Response regulator receiver domain N3114_07000 PF00512 His Kinase A (phospho-acceptor) domain N3114_07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_07005 PF00226 DnaJ domain N3114_07005 PF01556 DnaJ C terminal domain N3114_07010 PF13411 MerR HTH family regulatory protein N3114_07015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3114_07020 PF00005 ABC transporter N3114_07035 PF03741 Integral membrane protein TerC family N3114_07040 PF05525 Branched-chain amino acid transport protein N3114_07060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N3114_07060 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain N3114_07060 PF02142 MGS-like domain N3114_07070 PF06965 Na+/H+ antiporter 1 N3114_07080 PF00561 alpha/beta hydrolase fold N3114_07085 PF00593 TonB dependent receptor N3114_07085 PF07715 TonB-dependent Receptor Plug Domain N3114_07095 PF00091 Tubulin/FtsZ family, GTPase domain N3114_07095 PF12327 FtsZ family, C-terminal domain N3114_07100 PF02491 SHS2 domain inserted in FTSA N3114_07120 PF03960 ArsC family N3114_07135 PF00005 ABC transporter N3114_07135 PF12848 ABC transporter N3114_07135 PF16326 ABC transporter C-terminal domain N3114_07145 PF14602 Hexapeptide repeat of succinyl-transferase N3114_07145 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle N3114_07155 PF18319 PriA DNA helicase Cys-rich region (CRR) domain N3114_07155 PF17764 3′ DNA-binding domain (3′BD) N3114_07155 PF18074 Primosomal protein N C-terminal domain N3114_07155 PF00270 DEAD/DEAH box helicase N3114_07155 PF00271 Helicase conserved C-terminal domain N3114_07180 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA N3114_07185 PF00586 AIR synthase related protein, N-terminal domain N3114_07185 PF02769 AIR synthase related protein, C-terminal domain N3114_07195 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N3114_07195 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N3114_07200 PF01924 Hydrogenase formation hypA family N3114_07205 PF01455 HupF/HypC family N3114_07210 PF02492 CobW/HypB/UreG, nucleotide-binding domain N3114_07220 PF00672 HAMP domain N3114_07220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_07220 PF02203 Tar ligand binding domain homologue N3114_07240 PF05661 Protein of unknown function (DUF808) N3114_07250 PF12823 Domain of unknown function (DUF3817) N3114_07260 PF02926 THUMP domain N3114_07260 PF02568 Thiamine biosynthesis protein (ThiI) N3114_07280 PF00708 Acylphosphatase N3114_07280 PF01300 Telomere recombination N3114_07280 PF17788 HypF Kae1-like domain N3114_07280 PF07503 HypF finger N3114_07290 PF01750 Hydrogenase maturation protease N3114_07295 PF01292 Prokaryotic cytochrome b561 N3114_07300 PF00374 Nickel-dependent hydrogenase N3114_07305 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal N3114_07305 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N3114_07305 PF10518 TAT (twin-arginine translocation) pathway signal sequence N3114_07330 PF01750 Hydrogenase maturation protease N3114_07335 PF01292 Prokaryotic cytochrome b561 N3114_07340 PF00374 Nickel-dependent hydrogenase N3114_07345 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N3114_07345 PF10518 TAT (twin-arginine translocation) pathway signal sequence N3114_07345 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal N3114_07355 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal N3114_07355 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N3114_07360 PF00440 Bacterial regulatory proteins, tetR family N3114_07360 PF18665 Tetracyclin repressor-like, C-terminal domain N3114_07365 PF11791 Aconitate B N-terminal domain N3114_07365 PF00330 Aconitase family (aconitate hydratase) N3114_07365 PF06434 Aconitate hydratase 2 N-terminus N3114_07375 PF00563 EAL domain N3114_07375 PF01590 GAF domain N3114_07375 PF00990 Diguanylate cyclase, GGDEF domain N3114_07375 PF00360 Phytochrome region N3114_07380 PF01709 Transcriptional regulator N3114_07385 PF04333 MlaA lipoprotein N3114_07400 PF03641 Possible lysine decarboxylase N3114_07405 PF13419 Haloacid dehalogenase-like hydrolase N3114_07410 PF08534 Redoxin N3114_07420 PF02600 Disulfide bond formation protein DsbB N3114_07440 PF00593 TonB dependent receptor N3114_07440 PF07715 TonB-dependent Receptor Plug Domain N3114_07445 PF00990 Diguanylate cyclase, GGDEF domain N3114_07455 PF02028 BCCT, betaine/carnitine/choline family transporter N3114_07460 PF00999 Sodium/hydrogen exchanger family N3114_07460 PF02254 TrkA-N domain N3114_07470 PF00464 Serine hydroxymethyltransferase N3114_07475 PF02805 Metal binding domain of Ada N3114_07475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N3114_07475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain N3114_07475 PF12833 Helix-turn-helix domain N3114_07500 PF00202 Aminotransferase class-III N3114_07505 PF03473 MOSC domain N3114_07510 PF04055 Radical SAM superfamily N3114_07515 PF03099 Biotin/lipoate A/B protein ligase family N3114_07515 PF10437 Bacterial lipoate protein ligase C-terminus N3114_07520 PF17831 Pyruvate dehydrogenase E1 component middle domain N3114_07520 PF00456 Transketolase, thiamine diphosphate binding domain N3114_07525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N3114_07525 PF00364 Biotin-requiring enzyme N3114_07525 PF02817 e3 binding domain N3114_07530 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3114_07530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N3114_07535 PF07685 CobB/CobQ-like glutamine amidotransferase domain N3114_07540 PF01263 Aldose 1-epimerase N3114_07545 PF00905 Penicillin binding protein transpeptidase domain N3114_07550 PF00270 DEAD/DEAH box helicase N3114_07550 PF00271 Helicase conserved C-terminal domain N3114_07555 PF18381 YcaO cyclodehydratase C-terminal domain N3114_07555 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding N3114_07570 PF02203 Tar ligand binding domain homologue N3114_07570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_07570 PF00672 HAMP domain N3114_07575 PF00075 RNase H N3114_07580 PF00682 HMGL-like N3114_07590 PF00817 impB/mucB/samB family N3114_07590 PF11799 impB/mucB/samB family C-terminal domain N3114_07590 PF11798 IMS family HHH motif N3114_07600 PF00994 Probable molybdopterin binding domain N3114_07600 PF03454 MoeA C-terminal region (domain IV) N3114_07600 PF03453 MoeA N-terminal region (domain I and II) N3114_07605 PF00266 Aminotransferase class-V N3114_07610 PF02634 FdhD/NarQ family N3114_07620 PF13247 4Fe-4S dicluster domain N3114_07650 PF00512 His Kinase A (phospho-acceptor) domain N3114_07650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_07675 PF01841 Transglutaminase-like superfamily N3114_07685 PF13247 4Fe-4S dicluster domain N3114_07700 PF02769 AIR synthase related protein, C-terminal domain N3114_07700 PF00586 AIR synthase related protein, N-terminal domain N3114_07715 PF01551 Peptidase family M23 N3114_07715 PF10145 Phage-related minor tail protein N3114_07715 PF01464 Transglycosylase SLT domain N3114_07800 PF00574 Clp protease N3114_07815 PF03354 Phage Terminase N3114_07910 PF01883 Iron-sulfur cluster assembly protein N3114_07910 PF10609 NUBPL iron-transfer P-loop NTPase N3114_07920 PF17762 HTH domain found in ParB protein N3114_07920 PF02195 ParB-like nuclease domain N3114_07960 PF03841 L-seryl-tRNA selenium transferase N3114_07965 PF03144 Elongation factor Tu domain 2 N3114_07965 PF09107 Elongation factor SelB, winged helix N3114_07965 PF09106 Elongation factor SelB, winged helix N3114_07965 PF09105 Elongation factor SelB, winged helix N3114_07965 PF00009 Elongation factor Tu GTP binding domain N3114_08010 PF08448 PAS fold N3114_08010 PF08447 PAS fold N3114_08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_08015 PF03358 NADPH-dependent FMN reductase N3114_08025 PF01966 HD domain N3114_08030 PF08495 FIST N domain N3114_08030 PF00563 EAL domain N3114_08030 PF10442 FIST C domain N3114_08030 PF00990 Diguanylate cyclase, GGDEF domain N3114_08035 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region N3114_08035 PF01243 Pyridoxamine 5'-phosphate oxidase N3114_08040 PF00563 EAL domain N3114_08040 PF00990 Diguanylate cyclase, GGDEF domain N3114_08040 PF03707 Bacterial signalling protein N terminal repeat N3114_08045 PF00270 DEAD/DEAH box helicase N3114_08045 PF00271 Helicase conserved C-terminal domain N3114_08045 PF03880 DbpA RNA binding domain N3114_08065 PF00183 Hsp90 protein N3114_08070 PF00141 Peroxidase N3114_08090 PF04403 Paraquat-inducible protein A N3114_08105 PF08448 PAS fold N3114_08105 PF00990 Diguanylate cyclase, GGDEF domain N3114_08105 PF00563 EAL domain N3114_08125 PF04073 Aminoacyl-tRNA editing domain N3114_08135 PF01695 IstB-like ATP binding protein N3114_08140 PF00665 Integrase core domain N3114_08150 PF08713 DNA alkylation repair enzyme N3114_08160 PF00990 Diguanylate cyclase, GGDEF domain N3114_08160 PF08448 PAS fold N3114_08165 PF01965 DJ-1/PfpI family N3114_08170 PF05175 Methyltransferase small domain N3114_08170 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus N3114_08175 PF00491 Arginase family N3114_08180 PF00682 HMGL-like N3114_08180 PF08502 LeuA allosteric (dimerisation) domain N3114_08185 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term N3114_08185 PF12833 Helix-turn-helix domain N3114_08195 PF00183 Hsp90 protein N3114_08200 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N3114_08200 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N3114_08205 PF00924 Mechanosensitive ion channel N3114_08210 PF01368 DHH family N3114_08210 PF02833 DHHA2 domain N3114_08225 PF10415 Fumarase C C-terminus N3114_08225 PF00206 Lyase N3114_08230 PF01048 Phosphorylase superfamily N3114_08235 PF00698 Acyl transferase domain N3114_08240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N3114_08255 PF04052 TolB amino-terminal domain N3114_08265 PF02472 Biopolymer transport protein ExbD/TolR N3114_08270 PF01618 MotA/TolQ/ExbB proton channel family N3114_08275 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain N3114_08280 PF02874 ATP synthase alpha/beta family, beta-barrel domain N3114_08280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N3114_08285 PF00231 ATP synthase N3114_08290 PF02874 ATP synthase alpha/beta family, beta-barrel domain N3114_08290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N3114_08290 PF00306 ATP synthase alpha/beta chain, C terminal domain N3114_08295 PF00213 ATP synthase delta (OSCP) subunit N3114_08300 PF00430 ATP synthase B/B' CF(0) N3114_08310 PF17762 HTH domain found in ParB protein N3114_08310 PF02195 ParB-like nuclease domain N3114_08315 PF13614 AAA domain N3114_08330 PF02911 Formyl transferase, C-terminal domain N3114_08330 PF00551 Formyl transferase N3114_08335 PF00696 Amino acid kinase family N3114_08340 PF01018 GTP1/OBG N3114_08340 PF01926 50S ribosome-binding GTPase N3114_08345 PF01016 Ribosomal L27 protein N3114_08350 PF00829 Ribosomal prokaryotic L21 protein N3114_08355 PF08275 DNA primase catalytic core, N-terminal domain N3114_08355 PF16730 DnaG-primase C-terminal, helicase-binding domain N3114_08355 PF13662 Toprim domain N3114_08355 PF01807 CHC2 zinc finger N3114_08365 PF00035 Double-stranded RNA binding motif N3114_08365 PF14622 Ribonuclease-III-like N3114_08370 PF01264 Chorismate synthase N3114_08380 PF01435 Peptidase family M48 N3114_08390 PF00300 Histidine phosphatase superfamily (branch 1) N3114_08400 PF01926 50S ribosome-binding GTPase N3114_08400 PF10396 GTP-binding protein TrmE N-terminus N3114_08400 PF12631 MnmE helical domain N3114_08410 PF02096 60Kd inner membrane protein N3114_08410 PF14849 YidC periplasmic domain N3114_08415 PF01809 Putative membrane protein insertion efficiency factor N3114_08420 PF00825 Ribonuclease P N3114_08425 PF00468 Ribosomal protein L34 N3114_08430 PF10431 C-terminal, D2-small domain, of ClpB protein N3114_08430 PF07724 AAA domain (Cdc48 subfamily) N3114_08430 PF17871 AAA lid domain N3114_08430 PF02861 Clp amino terminal domain, pathogenicity island component N3114_08430 PF00004 ATPase family associated with various cellular activities (AAA) N3114_08435 PF01351 Ribonuclease HII N3114_08445 PF03976 Polyphosphate kinase 2 (PPK2) N3114_08455 PF01625 Peptide methionine sulfoxide reductase N3114_08460 PF01641 SelR domain N3114_08465 PF01557 Fumarylacetoacetate (FAA) hydrolase family N3114_08480 PF00202 Aminotransferase class-III N3114_08485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_08485 PF08447 PAS fold N3114_08485 PF08448 PAS fold N3114_08490 PF01808 AICARFT/IMPCHase bienzyme N3114_08490 PF02142 MGS-like domain N3114_08495 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain N3114_08495 PF02769 AIR synthase related protein, C-terminal domain N3114_08495 PF00586 AIR synthase related protein, N-terminal domain N3114_08505 PF01476 LysM domain N3114_08505 PF08525 Opacity-associated protein A N-terminal motif N3114_08505 PF01551 Peptidase family M23 N3114_08510 PF01227 GTP cyclohydrolase I N3114_08515 PF01544 CorA-like Mg2+ transporter protein N3114_08520 PF00482 Type II secretion system (T2SS), protein F N3114_08525 PF00437 Type II/IV secretion system protein N3114_08540 PF07650 KH domain N3114_08540 PF01926 50S ribosome-binding GTPase N3114_08545 PF13335 Magnesium chelatase, subunit ChlI C-terminal N3114_08545 PF01078 Magnesium chelatase, subunit ChlI N3114_08550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_08550 PF02203 Tar ligand binding domain homologue N3114_08550 PF00672 HAMP domain N3114_08565 PF01327 Polypeptide deformylase N3114_08570 PF00574 Clp protease N3114_08575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N3114_08575 PF05698 Bacterial trigger factor protein (TF) C-terminus N3114_08575 PF05697 Bacterial trigger factor protein (TF) N3114_08580 PF03976 Polyphosphate kinase 2 (PPK2) N3114_08585 PF03976 Polyphosphate kinase 2 (PPK2) N3114_08590 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N3114_08595 PF16653 Saccharopine dehydrogenase C-terminal domain N3114_08595 PF03435 Saccharopine dehydrogenase NADP binding domain N3114_08620 PF01053 Cys/Met metabolism PLP-dependent enzyme N3114_08625 PF01053 Cys/Met metabolism PLP-dependent enzyme N3114_08630 PF00486 Transcriptional regulatory protein, C terminal N3114_08630 PF00072 Response regulator receiver domain N3114_08635 PF00672 HAMP domain N3114_08635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_08635 PF02203 Tar ligand binding domain homologue N3114_08640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_08640 PF00512 His Kinase A (phospho-acceptor) domain N3114_08640 PF00989 PAS fold N3114_08665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N3114_08675 PF00486 Transcriptional regulatory protein, C terminal N3114_08675 PF00072 Response regulator receiver domain N3114_08685 PF03824 High-affinity nickel-transport protein N3114_08700 PF06965 Na+/H+ antiporter 1 N3114_08705 PF03150 Di-haem cytochrome c peroxidase N3114_08710 PF04116 Fatty acid hydroxylase superfamily N3114_08735 PF00137 ATP synthase subunit C N3114_08745 PF02899 Phage integrase, N-terminal SAM-like domain N3114_08745 PF00589 Phage integrase family N3114_08750 PF00665 Integrase core domain N3114_08755 PF01695 IstB-like ATP binding protein N3114_08795 PF02796 Helix-turn-helix domain of resolvase N3114_08795 PF00239 Resolvase, N terminal domain N3114_08815 PF10544 T5orf172 domain N3114_08840 PF13166 AAA domain N3114_08950 PF08543 Phosphomethylpyrimidine kinase N3114_08955 PF00171 Aldehyde dehydrogenase family N3114_08970 PF12801 4Fe-4S binding domain N3114_08970 PF13746 4Fe-4S dicluster domain N3114_08970 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase N3114_08975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_08975 PF00512 His Kinase A (phospho-acceptor) domain N3114_08980 PF00072 Response regulator receiver domain N3114_08980 PF00486 Transcriptional regulatory protein, C terminal N3114_08990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N3114_08990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N3114_08990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N3114_08990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N3114_08995 PF00795 Carbon-nitrogen hydrolase N3114_09015 PF00258 Flavodoxin N3114_09020 PF01475 Ferric uptake regulator family N3114_09030 PF04376 Arginine-tRNA-protein transferase, N terminus N3114_09030 PF04377 Arginine-tRNA-protein transferase, C terminus N3114_09035 PF00290 Tryptophan synthase alpha chain N3114_09040 PF02548 Ketopantoate hydroxymethyltransferase N3114_09045 PF05496 Holliday junction DNA helicase RuvB P-loop domain N3114_09045 PF05491 RuvB C-terminal winged helix domain N3114_09045 PF17864 RuvB AAA lid domain N3114_09050 PF01594 AI-2E family transporter N3114_09090 PF04055 Radical SAM superfamily N3114_09095 PF01208 Uroporphyrinogen decarboxylase (URO-D) N3114_09105 PF01118 Semialdehyde dehydrogenase, NAD binding domain N3114_09105 PF02774 Semialdehyde dehydrogenase, dimerisation domain N3114_09110 PF03989 DNA gyrase C-terminal domain, beta-propeller N3114_09110 PF00521 DNA gyrase/topoisomerase IV, subunit A N3114_09120 PF01960 ArgJ family N3114_09130 PF00830 Ribosomal L28 family N3114_09145 PF01370 NAD dependent epimerase/dehydratase family N3114_09150 PF01467 Cytidylyltransferase-like N3114_09150 PF00294 pfkB family carbohydrate kinase N3114_09155 PF13580 SIS domain N3114_09165 PF01695 IstB-like ATP binding protein N3114_09170 PF00665 Integrase core domain N3114_09185 PF03062 MBOAT, membrane-bound O-acyltransferase family N3114_09190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N3114_09200 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N3114_09205 PF00535 Glycosyl transferase family 2 N3114_09220 PF13439 Glycosyltransferase Family 4 N3114_09220 PF00534 Glycosyl transferases group 1 N3114_09225 PF00535 Glycosyl transferase family 2 N3114_09240 PF00132 Bacterial transferase hexapeptide (six repeats) N3114_09240 PF14602 Hexapeptide repeat of succinyl-transferase N3114_09240 PF12464 Maltose acetyltransferase N3114_09245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N3114_09255 PF16363 GDP-mannose 4,6 dehydratase N3114_09260 PF04321 RmlD substrate binding domain N3114_09265 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase N3114_09270 PF00483 Nucleotidyl transferase N3114_09290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N3114_09300 PF00037 4Fe-4S binding domain N3114_09310 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3114_09310 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster N3114_09315 PF04898 Glutamate synthase central domain N3114_09315 PF01645 Conserved region in glutamate synthase N3114_09315 PF01493 GXGXG motif N3114_09315 PF00310 Glutamine amidotransferases class-II N3114_09330 PF00672 HAMP domain N3114_09330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_09330 PF02203 Tar ligand binding domain homologue N3114_09340 PF03958 Bacterial type II/III secretion system short domain N3114_09340 PF00263 Bacterial type II and III secretion system protein N3114_09345 PF09186 Domain of unknown function (DUF1949) N3114_09345 PF01205 Uncharacterized protein family UPF0029 N3114_09350 PF01728 FtsJ-like methyltransferase N3114_09350 PF01479 S4 domain N3114_09355 PF01687 Riboflavin kinase N3114_09355 PF06574 FAD synthetase N3114_09360 PF13649 Methyltransferase domain N3114_09365 PF00578 AhpC/TSA family N3114_09375 PF02913 FAD linked oxidases, C-terminal domain N3114_09375 PF01565 FAD binding domain N3114_09380 PF03631 Virulence factor BrkB N3114_09390 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N3114_09400 PF00793 DAHP synthetase I family N3114_09405 PF00885 6,7-dimethyl-8-ribityllumazine synthase N3114_09410 PF01029 NusB family N3114_09415 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family N3114_09435 PF00005 ABC transporter N3114_09445 PF04023 FeoA domain N3114_09450 PF04023 FeoA domain N3114_09450 PF07664 Ferrous iron transport protein B C terminus N3114_09450 PF17910 FeoB cytosolic helical domain N3114_09450 PF02421 Ferrous iron transport protein B N3114_09450 PF07670 Nucleoside recognition N3114_09475 PF00403 Heavy-metal-associated domain N3114_09480 PF01022 Bacterial regulatory protein, arsR family N3114_09485 PF00593 TonB dependent receptor N3114_09485 PF07715 TonB-dependent Receptor Plug Domain N3114_09495 PF00873 AcrB/AcrD/AcrF family N3114_09510 PF00313 'Cold-shock' DNA-binding domain N3114_09520 PF12833 Helix-turn-helix domain N3114_09520 PF00072 Response regulator receiver domain N3114_09525 PF00989 PAS fold N3114_09525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_09525 PF00512 His Kinase A (phospho-acceptor) domain N3114_09560 PF10417 C-terminal domain of 1-Cys peroxiredoxin N3114_09560 PF00578 AhpC/TSA family N3114_09565 PF00085 Thioredoxin N3114_09580 PF00623 RNA polymerase Rpb1, domain 2 N3114_09580 PF05000 RNA polymerase Rpb1, domain 4 N3114_09580 PF04998 RNA polymerase Rpb1, domain 5 N3114_09580 PF04983 RNA polymerase Rpb1, domain 3 N3114_09580 PF04997 RNA polymerase Rpb1, domain 1 N3114_09585 PF04563 RNA polymerase beta subunit N3114_09585 PF04561 RNA polymerase Rpb2, domain 2 N3114_09585 PF04565 RNA polymerase Rpb2, domain 3 N3114_09585 PF10385 RNA polymerase beta subunit external 1 domain N3114_09585 PF00562 RNA polymerase Rpb2, domain 6 N3114_09585 PF04560 RNA polymerase Rpb2, domain 7 N3114_09590 PF00542 Ribosomal protein L7/L12 C-terminal domain N3114_09590 PF16320 Ribosomal protein L7/L12 dimerisation domain N3114_09595 PF00466 Ribosomal protein L10 N3114_09600 PF00687 Ribosomal protein L1p/L10e family N3114_09605 PF03946 Ribosomal protein L11, N-terminal domain N3114_09605 PF00298 Ribosomal protein L11, RNA binding domain N3114_09610 PF02357 Transcription termination factor nusG N3114_09625 PF00471 Ribosomal protein L33 N3114_09630 PF00009 Elongation factor Tu GTP binding domain N3114_09630 PF03143 Elongation factor Tu C-terminal domain N3114_09630 PF03144 Elongation factor Tu domain 2 N3114_09655 PF08245 Mur ligase middle domain N3114_09660 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 N3114_09660 PF00953 Glycosyl transferase family 4 N3114_09665 PF06415 BPG-independent PGAM N-terminus (iPGM_N) N3114_09665 PF01676 Metalloenzyme superfamily N3114_09670 PF00005 ABC transporter N3114_09670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N3114_09675 PF00912 Transglycosylase N3114_09675 PF00905 Penicillin binding protein transpeptidase domain N3114_09680 PF00120 Glutamine synthetase, catalytic domain N3114_09680 PF03951 Glutamine synthetase, beta-Grasp domain N3114_09690 PF02391 MoaE protein N3114_09700 PF02621 Menaquinone biosynthesis N3114_09705 PF02673 Bacitracin resistance protein BacA N3114_09710 PF04101 Glycosyltransferase family 28 C-terminal domain N3114_09710 PF03033 Glycosyltransferase family 28 N-terminal domain N3114_09715 PF01098 Cell cycle protein N3114_09720 PF03717 Penicillin-binding Protein dimerisation domain N3114_09720 PF00905 Penicillin binding protein transpeptidase domain N3114_09725 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N3114_09765 PF17871 AAA lid domain N3114_09765 PF02861 Clp amino terminal domain, pathogenicity island component N3114_09765 PF10431 C-terminal, D2-small domain, of ClpB protein N3114_09765 PF00004 ATPase family associated with various cellular activities (AAA) N3114_09765 PF07724 AAA domain (Cdc48 subfamily) N3114_09770 PF02617 ATP-dependent Clp protease adaptor protein ClpS N3114_09785 PF00501 AMP-binding enzyme N3114_09785 PF13193 AMP-binding enzyme C-terminal domain N3114_09790 PF01575 MaoC like domain N3114_09810 PF02203 Tar ligand binding domain homologue N3114_09810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_09810 PF00672 HAMP domain N3114_09815 PF02040 Arsenical pump membrane protein N3114_09835 PF01451 Low molecular weight phosphotyrosine protein phosphatase N3114_09840 PF01613 Flavin reductase like domain N3114_09850 PF00771 FHIPEP family N3114_09855 PF00700 Bacterial flagellin C-terminal helical region N3114_09855 PF00669 Bacterial flagellin N-terminal helical region N3114_09860 PF18269 T3SS EscN ATPase C-terminal domain N3114_09860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N3114_09870 PF01312 FlhB HrpN YscU SpaS Family N3114_09885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3114_09885 PF00460 Flagella basal body rod protein N3114_09890 PF02049 Flagellar hook-basal body complex protein FliE N3114_09900 PF10609 NUBPL iron-transfer P-loop NTPase N3114_09905 PF00448 SRP54-type protein, GTPase domain N3114_09925 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N3114_09925 PF16973 Flagellar motor switch protein FliN N-terminal N3114_09945 PF07559 Flagellar basal body protein FlaE N3114_09945 PF07196 Flagellin hook IN motif N3114_09945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3114_09945 PF00460 Flagella basal body rod protein N3114_09950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3114_09950 PF00460 Flagella basal body rod protein N3114_09960 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N3114_09970 PF01706 FliG C-terminal domain N3114_09970 PF14841 FliG middle domain N3114_09970 PF14842 FliG N-terminal domain N3114_09975 PF01514 Secretory protein of YscJ/FliF family N3114_09975 PF08345 Flagellar M-ring protein C-terminal N3114_09980 PF00460 Flagella basal body rod protein N3114_09985 PF00460 Flagella basal body rod protein N3114_09985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3114_09995 PF00072 Response regulator receiver domain N3114_10000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3114_10000 PF00460 Flagella basal body rod protein N3114_10015 PF01782 RimM N-terminal domain N3114_10025 PF00886 Ribosomal protein S16 N3114_10030 PF00448 SRP54-type protein, GTPase domain N3114_10030 PF02881 SRP54-type protein, helical bundle domain N3114_10030 PF02978 Signal peptide binding domain N3114_10035 PF00849 RNA pseudouridylate synthase N3114_10040 PF00534 Glycosyl transferases group 1 N3114_10040 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) N3114_10050 PF01784 NIF3 (NGG1p interacting factor 3) N3114_10055 PF02091 Glycyl-tRNA synthetase alpha subunit N3114_10065 PF00731 AIR carboxylase N3114_10075 PF01136 Peptidase family U32 N3114_10080 PF00672 HAMP domain N3114_10080 PF00672 HAMP domain N3114_10080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_10080 PF17200 Single Cache domain 2 N3114_10080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_10080 PF17200 Single Cache domain 2 N3114_10085 PF13476 AAA domain N3114_10090 PF01513 ATP-NAD kinase N3114_10095 PF00679 Elongation factor G C-terminus N3114_10095 PF14492 Elongation Factor G, domain II N3114_10095 PF03764 Elongation factor G, domain IV N3114_10095 PF00009 Elongation factor Tu GTP binding domain N3114_10095 PF03144 Elongation factor Tu domain 2 N3114_10100 PF00177 Ribosomal protein S7p/S5e N3114_10105 PF00164 Ribosomal protein S12/S23 N3114_10110 PF02273 Acyl transferase N3114_10115 PF07690 Major Facilitator Superfamily N3114_10120 PF07715 TonB-dependent Receptor Plug Domain N3114_10120 PF00593 TonB dependent receptor N3114_10135 PF00005 ABC transporter N3114_10140 PF00528 Binding-protein-dependent transport system inner membrane component N3114_10180 PF00117 Glutamine amidotransferase class-I N3114_10205 PF12008 Type I restriction and modification enzyme - subunit R C terminal N3114_10205 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) N3114_10205 PF18766 SWI2/SNF2 ATPase N3114_10215 PF01420 Type I restriction modification DNA specificity domain N3114_10220 PF02384 N-6 DNA Methylase N3114_10220 PF12161 HsdM N-terminal domain N3114_10235 PF01695 IstB-like ATP binding protein N3114_10260 PF01695 IstB-like ATP binding protein N3114_10265 PF00665 Integrase core domain N3114_10275 PF06067 Domain of unknown function (DUF932) N3114_10305 PF08447 PAS fold N3114_10305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_10325 PF13416 Bacterial extracellular solute-binding protein N3114_10330 PF00528 Binding-protein-dependent transport system inner membrane component N3114_10335 PF08402 TOBE domain N3114_10335 PF00005 ABC transporter N3114_10345 PF00593 TonB dependent receptor N3114_10345 PF07715 TonB-dependent Receptor Plug Domain N3114_10365 PF01077 Nitrite and sulphite reductase 4Fe-4S domain N3114_10365 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain N3114_10385 PF17674 HHH domain N3114_10385 PF00575 S1 RNA binding domain N3114_10385 PF09371 Tex-like protein N-terminal domain N3114_10385 PF16921 Tex protein YqgF-like domain N3114_10395 PF01042 Endoribonuclease L-PSP N3114_10410 PF00155 Aminotransferase class I and II N3114_10420 PF09335 SNARE associated Golgi protein N3114_10425 PF01245 Ribosomal protein L19 N3114_10430 PF01746 tRNA (Guanine-1)-methyltransferase N3114_10440 PF08267 Cobalamin-independent synthase, N-terminal domain N3114_10440 PF01717 Cobalamin-independent synthase, Catalytic domain N3114_10445 PF13291 ACT domain N3114_10445 PF00291 Pyridoxal-phosphate dependent enzyme N3114_10450 PF00119 ATP synthase A chain N3114_10460 PF05538 Campylobacter major outer membrane protein N3114_10470 PF02660 Glycerol-3-phosphate acyltransferase N3114_10475 PF02445 Quinolinate synthetase A protein N3114_10480 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain N3114_10480 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain N3114_10495 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase N3114_10505 PF00288 GHMP kinases N terminal domain N3114_10505 PF08544 GHMP kinases C terminal N3114_10515 PF00009 Elongation factor Tu GTP binding domain N3114_10515 PF11987 Translation-initiation factor 2 N3114_10515 PF04760 Translation initiation factor IF-2, N-terminal region N3114_10520 PF02033 Ribosome-binding factor A N3114_10525 PF02576 RimP N-terminal domain N3114_10530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N3114_10530 PF01872 RibD C-terminal domain N3114_10535 PF09285 Elongation factor P, C-terminal N3114_10535 PF08207 Elongation factor P (EF-P) KOW-like domain N3114_10535 PF01132 Elongation factor P (EF-P) OB domain N3114_10540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N3114_10540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N3114_10540 PF01842 ACT domain N3114_10545 PF00575 S1 RNA binding domain N3114_10550 PF02401 LytB protein N3114_10555 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N3114_10560 PF03484 tRNA synthetase B5 domain N3114_10560 PF03147 Ferredoxin-fold anticodon binding domain N3114_10560 PF01588 Putative tRNA binding domain N3114_10560 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain N3114_10565 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain N3114_10565 PF01409 tRNA synthetases class II core domain (F) N3114_10570 PF01230 HIT domain N3114_10575 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit N3114_10580 PF00109 Beta-ketoacyl synthase, N-terminal domain N3114_10580 PF02801 Beta-ketoacyl synthase, C-terminal domain N3114_10585 PF00550 Phosphopantetheine attachment site N3114_10595 PF04055 Radical SAM superfamily N3114_10605 PF06508 Queuosine biosynthesis protein QueC N3114_10615 PF04452 RNA methyltransferase N3114_10625 PF00032 Cytochrome b(C-terminal)/b6/petD N3114_10625 PF00033 Cytochrome b/b6/petB N3114_10630 PF00355 Rieske [2Fe-2S] domain N3114_10635 PF00291 Pyridoxal-phosphate dependent enzyme N3114_10640 PF00696 Amino acid kinase family N3114_10645 PF13361 UvrD-like helicase C-terminal domain N3114_10645 PF00580 UvrD/REP helicase N-terminal domain N3114_10655 PF03462 PCRF domain N3114_10655 PF00472 RF-1 domain N3114_10660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N3114_10685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N3114_10685 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP N3114_10700 PF00115 Cytochrome C and Quinol oxidase polypeptide I N3114_10705 PF01668 SmpB protein N3114_10710 PF00288 GHMP kinases N terminal domain N3114_10715 PF01509 TruB family pseudouridylate synthase (N terminal domain) N3114_10720 PF00580 UvrD/REP helicase N-terminal domain N3114_10720 PF13361 UvrD-like helicase C-terminal domain N3114_10725 PF03466 LysR substrate binding domain N3114_10725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3114_10730 PF04055 Radical SAM superfamily N3114_10730 PF16199 Radical_SAM C-terminal domain N3114_10735 PF13537 Glutamine amidotransferase domain N3114_10735 PF00156 Phosphoribosyl transferase domain N3114_10740 PF01113 Dihydrodipicolinate reductase, N-terminus N3114_10740 PF05173 Dihydrodipicolinate reductase, C-terminus N3114_10745 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3114_10750 PF00085 Thioredoxin N3114_10755 PF02272 DHHA1 domain N3114_10755 PF01411 tRNA synthetases class II (A) N3114_10755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N3114_10785 PF00072 Response regulator receiver domain N3114_10785 PF00486 Transcriptional regulatory protein, C terminal N3114_10790 PF17820 PDZ domain N3114_10790 PF13180 PDZ domain N3114_10795 PF00920 Dehydratase family N3114_10875 PF09383 NIL domain N3114_10875 PF00005 ABC transporter N3114_10890 PF01142 tRNA pseudouridine synthase D (TruD) N3114_10895 PF15437 Plasminogen-binding protein pgbA C-terminal N3114_10905 PF13180 PDZ domain N3114_10905 PF03572 Peptidase family S41 N3114_10910 PF01259 SAICAR synthetase N3114_10915 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase N3114_10930 PF01553 Acyltransferase N3114_10935 PF02537 CrcB-like protein, Camphor Resistance (CrcB) N3114_10940 PF02416 mttA/Hcf106 family N3114_10945 PF02416 mttA/Hcf106 family N3114_10950 PF03485 Arginyl tRNA synthetase N terminal domain N3114_10950 PF05746 DALR anticodon binding domain N3114_10950 PF00750 tRNA synthetases class I (R) N3114_10960 PF01467 Cytidylyltransferase-like N3114_10965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N3114_10965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N3114_10970 PF00162 Phosphoglycerate kinase N3114_10975 PF00121 Triosephosphate isomerase N3114_10985 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N3114_10985 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N3114_10990 PF00800 Prephenate dehydratase N3114_10990 PF01842 ACT domain N3114_10990 PF01817 Chorismate mutase type II N3114_10995 PF00155 Aminotransferase class I and II N3114_11000 PF02780 Transketolase, C-terminal domain N3114_11000 PF02779 Transketolase, pyrimidine binding domain N3114_11000 PF13292 1-deoxy-D-xylulose-5-phosphate synthase N3114_11005 PF00034 Cytochrome c N3114_11005 PF03150 Di-haem cytochrome c peroxidase N3114_11010 PF02545 Maf-like protein N3114_11025 PF00877 NlpC/P60 family N3114_11040 PF03167 Uracil DNA glycosylase superfamily N3114_11045 PF00171 Aldehyde dehydrogenase family N3114_11050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N3114_11050 PF00205 Thiamine pyrophosphate enzyme, central domain N3114_11050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N3114_11070 PF13419 Haloacid dehalogenase-like hydrolase N3114_11075 PF00210 Ferritin-like domain N3114_11080 PF07690 Major Facilitator Superfamily N3114_11090 PF00990 Diguanylate cyclase, GGDEF domain N3114_11090 PF00072 Response regulator receiver domain N3114_11095 PF00529 HlyD membrane-fusion protein of T1SS N3114_11095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3114_11100 PF00873 AcrB/AcrD/AcrF family N3114_11105 PF02321 Outer membrane efflux protein N3114_11110 PF00593 TonB dependent receptor N3114_11110 PF07715 TonB-dependent Receptor Plug Domain N3114_11150 PF02195 ParB-like nuclease domain N3114_11150 PF17762 HTH domain found in ParB protein N3114_11160 PF01883 Iron-sulfur cluster assembly protein N3114_11160 PF10609 NUBPL iron-transfer P-loop NTPase N3114_11255 PF03354 Phage Terminase N3114_11270 PF00574 Clp protease N3114_11295 PF00574 Clp protease N3114_11380 PF01464 Transglycosylase SLT domain N3114_11380 PF10145 Phage-related minor tail protein N3114_11380 PF01551 Peptidase family M23 N3114_11400 PF01695 IstB-like ATP binding protein N3114_11405 PF00665 Integrase core domain N3114_11410 PF04542 Sigma-70 region 2 N3114_11410 PF08281 Sigma-70, region 4 N3114_11450 PF01053 Cys/Met metabolism PLP-dependent enzyme N3114_11455 PF02082 Transcriptional regulator N3114_11460 PF00291 Pyridoxal-phosphate dependent enzyme N3114_11470 PF01507 Phosphoadenosine phosphosulfate reductase family N3114_11475 PF01507 Phosphoadenosine phosphosulfate reductase family N3114_11480 PF00009 Elongation factor Tu GTP binding domain N3114_11485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain N3114_11485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain N3114_11495 PF02347 Glycine cleavage system P-protein N3114_11525 PF02277 Phosphoribosyltransferase N3114_11540 PF02683 Cytochrome C biogenesis protein transmembrane region N3114_11540 PF11412 Disulphide bond corrector protein DsbC N3114_11545 PF08443 RimK-like ATP-grasp domain N3114_11545 PF18030 RimK PreATP-grasp domain N3114_11560 PF00990 Diguanylate cyclase, GGDEF domain N3114_11560 PF08495 FIST N domain N3114_11560 PF00563 EAL domain N3114_11560 PF10442 FIST C domain N3114_11565 PF02666 Phosphatidylserine decarboxylase N3114_11575 PF06725 3D domain N3114_11575 PF03562 MltA specific insert domain N3114_11580 PF00012 Hsp70 protein N3114_11585 PF01025 GrpE N3114_11590 PF01628 HrcA protein C terminal domain N3114_11600 PF01416 tRNA pseudouridine synthase N3114_11615 PF01255 Putative undecaprenyl diphosphate synthase N3114_11620 PF04127 DNA / pantothenate metabolism flavoprotein N3114_11620 PF02441 Flavoprotein N3114_11625 PF12804 MobA-like NTP transferase domain N3114_11625 PF14602 Hexapeptide repeat of succinyl-transferase N3114_11635 PF08148 DSHCT (NUC185) domain N3114_11635 PF00270 DEAD/DEAH box helicase N3114_11635 PF00271 Helicase conserved C-terminal domain N3114_11640 PF05958 tRNA (Uracil-5-)-methyltransferase N3114_11645 PF00293 NUDIX domain N3114_11655 PF01134 Glucose inhibited division protein A N3114_11655 PF13932 GidA associated domain N3114_11660 PF00677 Lumazine binding domain N3114_11675 PF07724 AAA domain (Cdc48 subfamily) N3114_11675 PF10431 C-terminal, D2-small domain, of ClpB protein N3114_11675 PF06689 ClpX C4-type zinc finger N3114_11680 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 N3114_11680 PF00132 Bacterial transferase hexapeptide (six repeats) N3114_11685 PF07977 FabA-like domain N3114_11690 PF02684 Lipid-A-disaccharide synthetase N3114_11695 PF02677 Epoxyqueuosine reductase QueH N3114_11705 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3114_11715 PF01261 Xylose isomerase-like TIM barrel N3114_11720 PF02321 Outer membrane efflux protein N3114_11725 PF00873 AcrB/AcrD/AcrF family N3114_11730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3114_11730 PF00529 HlyD membrane-fusion protein of T1SS N3114_11740 PF07690 Major Facilitator Superfamily N3114_11745 PF00916 Sulfate permease family N3114_11745 PF01740 STAS domain N3114_11765 PF17758 Proteasomal ATPase OB N-terminal domain N3114_11765 PF16450 Proteasomal ATPase OB C-terminal domain N3114_11765 PF00004 ATPase family associated with various cellular activities (AAA) N3114_11770 PF03781 Sulfatase-modifying factor enzyme 1 N3114_11770 PF08308 PEGA domain N3114_11775 PF02621 Menaquinone biosynthesis N3114_11780 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain N3114_11785 PF01131 DNA topoisomerase N3114_11785 PF01751 Toprim domain N3114_11785 PF13368 Topoisomerase C-terminal repeat N3114_11795 PF04055 Radical SAM superfamily N3114_11795 PF06968 Biotin and Thiamin Synthesis associated domain N3114_11810 PF03952 Enolase, N-terminal domain N3114_11810 PF00113 Enolase, C-terminal TIM barrel domain N3114_11815 PF00154 recA bacterial DNA recombination protein N3114_11825 PF02719 Polysaccharide biosynthesis protein N3114_11830 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N3114_11835 PF17191 RecG wedge domain N3114_11835 PF13749 Putative ATP-dependent DNA helicase recG C-terminal N3114_11835 PF00270 DEAD/DEAH box helicase N3114_11840 PF02348 Cytidylyltransferase N3114_11850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N3114_11850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N3114_11880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N3114_11880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N3114_11890 PF00668 Condensation domain N3114_11890 PF00975 Thioesterase domain N3114_11890 PF00550 Phosphopantetheine attachment site N3114_11890 PF00501 AMP-binding enzyme N3114_11890 PF13193 AMP-binding enzyme C-terminal domain N3114_11900 PF00753 Metallo-beta-lactamase superfamily N3114_11905 PF03102 NeuB family N3114_11905 PF08666 SAF domain N3114_11935 PF00700 Bacterial flagellin C-terminal helical region N3114_11935 PF00669 Bacterial flagellin N-terminal helical region N3114_11940 PF07196 Flagellin hook IN motif N3114_11940 PF00700 Bacterial flagellin C-terminal helical region N3114_11940 PF00669 Bacterial flagellin N-terminal helical region N3114_11945 PF12801 4Fe-4S binding domain N3114_11945 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase N3114_11945 PF13746 4Fe-4S dicluster domain N3114_11950 PF06418 CTP synthase N-terminus N3114_11950 PF00117 Glutamine amidotransferase class-I N3114_11955 PF02272 DHHA1 domain N3114_11955 PF01368 DHH family N3114_11955 PF17768 RecJ OB domain N3114_11975 PF07733 Bacterial DNA polymerase III alpha NTPase domain N3114_11975 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N3114_11975 PF02811 PHP domain N3114_11975 PF14579 Helix-hairpin-helix motif N3114_11980 PF01975 Survival protein SurE N3114_11995 PF01967 MoaC family N3114_12000 PF01165 Ribosomal protein S21 N3114_12030 PF01027 Inhibitor of apoptosis-promoting Bax1 N3114_12035 PF17792 ThiD2 family N3114_12035 PF02581 Thiamine monophosphate synthase N3114_12045 PF03840 Preprotein translocase SecG subunit N3114_12050 PF01765 Ribosome recycling factor N3114_12055 PF00156 Phosphoribosyl transferase domain N3114_12070 PF01544 CorA-like Mg2+ transporter protein N3114_12075 PF03883 Peroxide stress protein YaaA N3114_12090 PF00149 Calcineurin-like phosphoesterase N3114_12100 PF00593 TonB dependent receptor N3114_12100 PF07715 TonB-dependent Receptor Plug Domain N3114_12105 PF12833 Helix-turn-helix domain N3114_12110 PF00011 Hsp20/alpha crystallin family N3114_12115 PF01814 Hemerythrin HHE cation binding domain N3114_12120 PF00672 HAMP domain N3114_12120 PF02203 Tar ligand binding domain homologue N3114_12120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_12135 PF00581 Rhodanese-like domain N3114_12135 PF00899 ThiF family N3114_12140 PF00005 ABC transporter N3114_12140 PF17850 CysA C-terminal regulatory domain N3114_12140 PF12857 TOBE-like domain N3114_12145 PF00528 Binding-protein-dependent transport system inner membrane component N3114_12150 PF00528 Binding-protein-dependent transport system inner membrane component N3114_12155 PF00291 Pyridoxal-phosphate dependent enzyme N3114_12160 PF00990 Diguanylate cyclase, GGDEF domain N3114_12160 PF10442 FIST C domain N3114_12160 PF08495 FIST N domain N3114_12160 PF00563 EAL domain N3114_12165 PF02597 ThiS family N3114_12190 PF03144 Elongation factor Tu domain 2 N3114_12190 PF00009 Elongation factor Tu GTP binding domain N3114_12190 PF00679 Elongation factor G C-terminus N3114_12195 PF04143 Sulphur transport N3114_12200 PF01206 Sulfurtransferase TusA N3114_12210 PF00990 Diguanylate cyclase, GGDEF domain N3114_12210 PF17158 Membrane-associated sensor, integral membrane domain N3114_12215 PF00884 Sulfatase N3114_12215 PF08019 Phosphoethanolamine transferase EptA/EptB N3114_12225 PF01219 Prokaryotic diacylglycerol kinase N3114_12255 PF00486 Transcriptional regulatory protein, C terminal N3114_12255 PF00072 Response regulator receiver domain N3114_12260 PF00512 His Kinase A (phospho-acceptor) domain N3114_12260 PF00989 PAS fold N3114_12260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_12260 PF00672 HAMP domain N3114_12260 PF18698 Histidine kinase sensor domain N3114_12265 PF08241 Methyltransferase domain N3114_12270 PF12833 Helix-turn-helix domain N3114_12275 PF11849 Domain of unknown function (DUF3369) N3114_12280 PF02511 Thymidylate synthase complementing protein N3114_12295 PF02911 Formyl transferase, C-terminal domain N3114_12295 PF00551 Formyl transferase N3114_12300 PF02075 Crossover junction endodeoxyribonuclease RuvC N3114_12305 PF13614 AAA domain N3114_12310 PF02195 ParB-like nuclease domain N3114_12310 PF17762 HTH domain found in ParB protein N3114_12330 PF00239 Resolvase, N terminal domain N3114_12330 PF02796 Helix-turn-helix domain of resolvase N3114_12355 PF02371 Transposase IS116/IS110/IS902 family N3114_12355 PF01548 Transposase N3114_12365 PF02203 Tar ligand binding domain homologue N3114_12365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_12365 PF00672 HAMP domain N3114_12370 PF01695 IstB-like ATP binding protein N3114_12385 PF08668 HDOD domain N3114_12390 PF00486 Transcriptional regulatory protein, C terminal N3114_12390 PF00072 Response regulator receiver domain N3114_12405 PF02203 Tar ligand binding domain homologue N3114_12405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3114_12405 PF00672 HAMP domain N3114_12415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3114_12415 PF08447 PAS fold N3114_12415 PF08448 PAS fold N3114_12420 PF07943 Penicillin-binding protein 5, C-terminal domain N3114_12420 PF00768 D-alanyl-D-alanine carboxypeptidase N3114_12445 PF00308 Bacterial dnaA protein N3114_12445 PF08299 Bacterial dnaA protein helix-turn-helix N3114_12445 PF11638 DnaA N-terminal domain N3114_12475 PF00239 Resolvase, N terminal domain N3114_12475 PF02796 Helix-turn-helix domain of resolvase N3114_12490 PF13361 UvrD-like helicase C-terminal domain N3114_12490 PF00580 UvrD/REP helicase N-terminal domain N3114_12495 PF01555 DNA methylase N3114_12495 PF18273 Type III R-M EcoP15I C-terminal domain N3114_12505 PF04851 Type III restriction enzyme, res subunit N3114_12505 PF08774 VRR-NUC domain N3114_12510 PF00665 Integrase core domain N3114_12515 PF01695 IstB-like ATP binding protein N3114_12525 PF00679 Elongation factor G C-terminus N3114_12525 PF14492 Elongation Factor G, domain II N3114_12525 PF03764 Elongation factor G, domain IV N3114_12525 PF00009 Elongation factor Tu GTP binding domain N3114_12595 PF17762 HTH domain found in ParB protein N3114_12595 PF02195 ParB-like nuclease domain N3114_12720 PF00437 Type II/IV secretion system protein N3114_12745 PF08401 Domain of unknown function (DUF1738) N3114_12745 PF18818 Metallopeptidase superfamily domain N3114_12745 PF13362 Toprim domain