locus-tag class description N3115_00005 PF00308 Bacterial dnaA protein N3115_00005 PF08299 Bacterial dnaA protein helix-turn-helix N3115_00005 PF11638 DnaA N-terminal domain N3115_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain N3115_00010 PF02767 DNA polymerase III beta subunit, central domain N3115_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain N3115_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_00015 PF01751 Toprim domain N3115_00015 PF00204 DNA gyrase B N3115_00015 PF00986 DNA gyrase B subunit, carboxyl terminus N3115_00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3115_00025 PF14489 QueF-like protein N3115_00035 PF09335 SNARE associated Golgi protein N3115_00040 PF13649 Methyltransferase domain N3115_00045 PF00005 ABC transporter N3115_00045 PF08402 TOBE domain N3115_00050 PF00528 Binding-protein-dependent transport system inner membrane component N3115_00065 PF03459 TOBE domain N3115_00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3115_00075 PF03466 LysR substrate binding domain N3115_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3115_00090 PF00849 RNA pseudouridylate synthase N3115_00095 PF10397 Adenylosuccinate lyase C-terminus N3115_00095 PF00206 Lyase N3115_00100 PF03477 ATP cone domain N3115_00100 PF02867 Ribonucleotide reductase, barrel domain N3115_00100 PF00317 Ribonucleotide reductase, all-alpha domain N3115_00105 PF00268 Ribonucleotide reductase, small chain N3115_00125 PF00691 OmpA family N3115_00125 PF18393 MotY N-terminal domain N3115_00135 PF08240 Alcohol dehydrogenase GroES-like domain N3115_00135 PF00107 Zinc-binding dehydrogenase N3115_00140 PF01638 HxlR-like helix-turn-helix N3115_00145 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus N3115_00145 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus N3115_00150 PF02637 GatB domain N3115_00150 PF02934 GatB/GatE catalytic domain N3115_00165 PF02652 L-lactate permease N3115_00170 PF00486 Transcriptional regulatory protein, C terminal N3115_00170 PF00072 Response regulator receiver domain N3115_00175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_00175 PF00512 His Kinase A (phospho-acceptor) domain N3115_00175 PF00989 PAS fold N3115_00180 PF02589 LUD domain N3115_00185 PF02589 LUD domain N3115_00185 PF13183 4Fe-4S dicluster domain N3115_00185 PF11870 Domain of unknown function (DUF3390) N3115_00190 PF02754 Cysteine-rich domain N3115_00195 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N3115_00200 PF00364 Biotin-requiring enzyme N3115_00205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N3115_00205 PF02785 Biotin carboxylase C-terminal domain N3115_00205 PF00289 Biotin carboxylase, N-terminal domain N3115_00210 PF00270 DEAD/DEAH box helicase N3115_00210 PF00271 Helicase conserved C-terminal domain N3115_00215 PF01384 Phosphate transporter family N3115_00225 PF13537 Glutamine amidotransferase domain N3115_00225 PF00733 Asparagine synthase N3115_00235 PF13638 PIN domain N3115_00235 PF02562 PhoH-like protein N3115_00240 PF03653 Uncharacterised protein family (UPF0093) N3115_00245 PF05496 Holliday junction DNA helicase RuvB P-loop domain N3115_00245 PF01661 Macro domain N3115_00245 PF12002 MgsA AAA+ ATPase C terminal N3115_00245 PF16193 AAA C-terminal domain N3115_00250 PF01479 S4 domain N3115_00250 PF00849 RNA pseudouridylate synthase N3115_00255 PF01380 SIS domain N3115_00255 PF00571 CBS domain N3115_00260 PF00753 Metallo-beta-lactamase superfamily N3115_00260 PF17770 Ribonuclease J C-terminal domain N3115_00260 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain N3115_00265 PF00398 Ribosomal RNA adenine dimethylase N3115_00270 PF00977 Histidine biosynthesis protein N3115_00285 PF04055 Radical SAM superfamily N3115_00290 PF00749 tRNA synthetases class I (E and Q), catalytic domain N3115_00295 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) N3115_00300 PF00486 Transcriptional regulatory protein, C terminal N3115_00300 PF00072 Response regulator receiver domain N3115_00305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_00325 PF00873 AcrB/AcrD/AcrF family N3115_00330 PF04264 YceI-like domain N3115_00335 PF00872 Transposase, Mutator family N3115_00340 PF00872 Transposase, Mutator family N3115_00365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N3115_00365 PF03129 Anticodon binding domain N3115_00365 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N3115_00370 PF05198 Translation initiation factor IF-3, N-terminal domain N3115_00370 PF00707 Translation initiation factor IF-3, C-terminal domain N3115_00375 PF01632 Ribosomal protein L35 N3115_00380 PF00453 Ribosomal protein L20 N3115_00395 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3115_00400 PF12804 MobA-like NTP transferase domain N3115_00405 PF00330 Aconitase family (aconitate hydratase) N3115_00410 PF01252 Signal peptidase (SPase) II N3115_00415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N3115_00415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N3115_00415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N3115_00415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N3115_00420 PF01649 Ribosomal protein S20 N3115_00425 PF00472 RF-1 domain N3115_00425 PF03462 PCRF domain N3115_00435 PF12849 PBP superfamily domain N3115_00440 PF12792 CSS motif domain associated with EAL N3115_00440 PF00563 EAL domain N3115_00445 PF00528 Binding-protein-dependent transport system inner membrane component N3115_00450 PF00528 Binding-protein-dependent transport system inner membrane component N3115_00455 PF00005 ABC transporter N3115_00460 PF01895 PhoU domain N3115_00470 PF00072 Response regulator receiver domain N3115_00470 PF00486 Transcriptional regulatory protein, C terminal N3115_00475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_00475 PF00512 His Kinase A (phospho-acceptor) domain N3115_00475 PF00989 PAS fold N3115_00475 PF16736 Single Cache-like N3115_00480 PF00572 Ribosomal protein L13 N3115_00485 PF00380 Ribosomal protein S9/S16 N3115_00490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N3115_00495 PF13419 Haloacid dehalogenase-like hydrolase N3115_00515 PF09383 NIL domain N3115_00515 PF00005 ABC transporter N3115_00520 PF02405 Permease MlaE N3115_00525 PF02664 S-Ribosylhomocysteinase (LuxS) N3115_00540 PF07943 Penicillin-binding protein 5, C-terminal domain N3115_00540 PF00768 D-alanyl-D-alanine carboxypeptidase N3115_00555 PF00809 Pterin binding enzyme N3115_00555 PF02965 Vitamin B12 dependent methionine synthase, activation domain N3115_00555 PF02607 B12 binding domain N3115_00555 PF02310 B12 binding domain N3115_00555 PF02574 Homocysteine S-methyltransferase N3115_00560 PF01063 Amino-transferase class IV N3115_00575 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase N3115_00575 PF01502 Phosphoribosyl-AMP cyclohydrolase N3115_00585 PF10609 NUBPL iron-transfer P-loop NTPase N3115_00585 PF01883 Iron-sulfur cluster assembly protein N3115_00590 PF01964 Radical SAM ThiC family N3115_00600 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase N3115_00600 PF02542 YgbB family N3115_00610 PF04608 Phosphatidylglycerophosphatase A N3115_00620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain N3115_00620 PF00117 Glutamine amidotransferase class-I N3115_00630 PF00709 Adenylosuccinate synthetase N3115_00635 PF13393 Histidyl-tRNA synthetase N3115_00640 PF00266 Aminotransferase class-V N3115_00645 PF04264 YceI-like domain N3115_00650 PF01047 MarR family N3115_00655 PF04264 YceI-like domain N3115_00670 PF17954 Quercetinase C-terminal cupin domain N3115_00670 PF02678 Pirin N3115_00675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N3115_00675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N3115_00680 PF02769 AIR synthase related protein, C-terminal domain N3115_00680 PF00586 AIR synthase related protein, N-terminal domain N3115_00685 PF17284 Spermidine synthase tetramerisation domain N3115_00690 PF01121 Dephospho-CoA kinase N3115_00695 PF01678 Diaminopimelate epimerase N3115_00700 PF02222 ATP-grasp domain N3115_00705 PF00583 Acetyltransferase (GNAT) family N3115_00715 PF02705 K+ potassium transporter N3115_00740 PF01197 Ribosomal protein L31 N3115_00745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N3115_00750 PF00588 SpoU rRNA Methylase family N3115_00750 PF08032 RNA 2'-O ribose methyltransferase substrate binding N3115_00760 PF00155 Aminotransferase class I and II N3115_00765 PF01842 ACT domain N3115_00765 PF00742 Homoserine dehydrogenase N3115_00765 PF03447 Homoserine dehydrogenase, NAD binding domain N3115_00780 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain N3115_00780 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase N3115_00780 PF13288 DXP reductoisomerase C-terminal domain N3115_00795 PF00814 Glycoprotease family N3115_00800 PF01253 Translation initiation factor SUI1 N3115_00805 PF03853 YjeF-related protein N-terminus N3115_00805 PF01256 Carbohydrate kinase N3115_00810 PF03091 CutA1 divalent ion tolerance protein N3115_00815 PF05690 Thiazole biosynthesis protein ThiG N3115_00855 PF00682 HMGL-like N3115_00855 PF02436 Conserved carboxylase domain N3115_00865 PF12833 Helix-turn-helix domain N3115_00870 PF02203 Tar ligand binding domain homologue N3115_00870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_00870 PF00672 HAMP domain N3115_00890 PF02779 Transketolase, pyrimidine binding domain N3115_00890 PF00456 Transketolase, thiamine diphosphate binding domain N3115_00890 PF02780 Transketolase, C-terminal domain N3115_00895 PF03788 LrgA family N3115_00900 PF04172 LrgB-like family N3115_00910 PF03994 Domain of Unknown Function (DUF350) N3115_00915 PF00375 Sodium:dicarboxylate symporter family N3115_00925 PF00501 AMP-binding enzyme N3115_00925 PF01553 Acyltransferase N3115_00925 PF13193 AMP-binding enzyme C-terminal domain N3115_00930 PF08335 GlnD PII-uridylyltransferase N3115_00930 PF01966 HD domain N3115_00945 PF12796 Ankyrin repeats (3 copies) N3115_00950 PF00543 Nitrogen regulatory protein P-II N3115_00960 PF02154 Flagellar motor switch protein FliM N3115_00960 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N3115_00965 PF02119 Flagellar P-ring protein N3115_00975 PF01313 Bacterial export proteins, family 3 N3115_01000 PF02107 Flagellar L-ring protein N3115_01005 PF00460 Flagella basal body rod protein N3115_01005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3115_01005 PF07559 Flagellar basal body protein FlaE N3115_01010 PF07196 Flagellin hook IN motif N3115_01010 PF07195 Flagellar hook-associated protein 2 C-terminus N3115_01010 PF02465 Flagellar hook-associated protein 2 N-terminus N3115_01015 PF02561 Flagellar protein FliS N3115_01025 PF01171 PP-loop family N3115_01030 PF04055 Radical SAM superfamily N3115_01030 PF18693 TRAM domain N3115_01030 PF00919 Uncharacterized protein family UPF0004 N3115_01035 PF02569 Pantoate-beta-alanine ligase N3115_01040 PF00528 Binding-protein-dependent transport system inner membrane component N3115_01045 PF01648 4'-phosphopantetheinyl transferase superfamily N3115_01050 PF03616 Sodium/glutamate symporter N3115_01055 PF03652 Holliday junction resolvase N3115_01070 PF00923 Transaldolase/Fructose-6-phosphate aldolase N3115_01075 PF01474 Class-II DAHP synthetase family N3115_01080 PF03502 Nucleoside-specific channel-forming protein, Tsx N3115_01085 PF03960 ArsC family N3115_01090 PF02686 Glu-tRNAGln amidotransferase C subunit N3115_01095 PF01702 Queuine tRNA-ribosyltransferase N3115_01105 PF00155 Aminotransferase class I and II N3115_01115 PF01225 Mur ligase family, catalytic domain N3115_01115 PF02875 Mur ligase family, glutamate ligase domain N3115_01115 PF08245 Mur ligase middle domain N3115_01125 PF04748 Divergent polysaccharide deacetylase N3115_01130 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain N3115_01130 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain N3115_01135 PF00773 RNB domain N3115_01140 PF02623 FliW protein N3115_01150 PF01250 Ribosomal protein S6 N3115_01155 PF00436 Single-strand binding protein family N3115_01160 PF01084 Ribosomal protein S18 N3115_01170 PF09190 DALR domain N3115_01170 PF01406 tRNA synthetases class I (C) catalytic domain N3115_01175 PF13184 NusA-like KH domain N3115_01175 PF08529 NusA N-terminal domain N3115_01185 PF04055 Radical SAM superfamily N3115_01185 PF01938 TRAM domain N3115_01185 PF00919 Uncharacterized protein family UPF0004 N3115_01190 PF04028 Domain of unknown function (DUF374) N3115_01200 PF04055 Radical SAM superfamily N3115_01210 PF00484 Carbonic anhydrase N3115_01215 PF00155 Aminotransferase class I and II N3115_01220 PF02021 Uncharacterised protein family UPF0102 N3115_01225 PF02597 ThiS family N3115_01225 PF05690 Thiazole biosynthesis protein ThiG N3115_01235 PF02887 Pyruvate kinase, alpha/beta domain N3115_01235 PF00224 Pyruvate kinase, barrel domain N3115_01235 PF00391 PEP-utilising enzyme, mobile domain N3115_01240 PF00202 Aminotransferase class-III N3115_01250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N3115_01250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N3115_01255 PF00425 chorismate binding enzyme N3115_01275 PF00872 Transposase, Mutator family N3115_01285 PF03831 PhnA domain N3115_01285 PF08274 PhnA Zinc-Ribbon N3115_01290 PF01863 Protein of unknown function DUF45 N3115_01295 PF01925 Sulfite exporter TauE/SafE N3115_01320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N3115_01320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N3115_01335 PF00285 Citrate synthase, C-terminal domain N3115_01340 PF00330 Aconitase family (aconitate hydratase) N3115_01340 PF00694 Aconitase C-terminal domain N3115_01345 PF04303 PrpF protein N3115_01355 PF00857 Isochorismatase family N3115_01360 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain N3115_01360 PF03900 Porphobilinogen deaminase, C-terminal domain N3115_01370 PF12169 DNA polymerase III subunits gamma and tau domain III N3115_01370 PF12170 DNA polymerase III tau subunit V interacting with alpha N3115_01375 PF01177 Asp/Glu/Hydantoin racemase N3115_01380 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N3115_01380 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain N3115_01385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N3115_01385 PF07498 Rho termination factor, N-terminal domain N3115_01385 PF07497 Rho termination factor, RNA-binding domain N3115_01390 PF10417 C-terminal domain of 1-Cys peroxiredoxin N3115_01390 PF00578 AhpC/TSA family N3115_01395 PF00037 4Fe-4S binding domain N3115_01400 PF00334 Nucleoside diphosphate kinase N3115_01410 PF01783 Ribosomal L32p protein family N3115_01415 PF02504 Fatty acid synthesis protein N3115_01420 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N3115_01420 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N3115_01430 PF00350 Dynamin family N3115_01435 PF00350 Dynamin family N3115_01440 PF13085 2Fe-2S iron-sulfur cluster binding domain N3115_01440 PF13183 4Fe-4S dicluster domain N3115_01445 PF00890 FAD binding domain N3115_01445 PF02910 Fumarate reductase flavoprotein C-term N3115_01450 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit N3115_01455 PF00361 Proton-conducting membrane transporter N3115_01460 PF00361 Proton-conducting membrane transporter N3115_01460 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus N3115_01465 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus N3115_01465 PF00361 Proton-conducting membrane transporter N3115_01470 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L N3115_01475 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 N3115_01480 PF12838 4Fe-4S dicluster domain N3115_01485 PF00146 NADH dehydrogenase N3115_01490 PF00384 Molybdopterin oxidoreductase N3115_01490 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal N3115_01490 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region N3115_01495 PF00285 Citrate synthase, C-terminal domain N3115_01500 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit N3115_01500 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region N3115_01500 PF10531 SLBB domain N3115_01510 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit N3115_01510 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit N3115_01515 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N3115_01520 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 N3115_01525 PF00155 Aminotransferase class I and II N3115_01530 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase N3115_01535 PF06738 Putative threonine/serine exporter N3115_01535 PF12821 Threonine/Serine exporter, ThrE N3115_01540 PF06738 Putative threonine/serine exporter N3115_01550 PF03309 Type III pantothenate kinase N3115_01555 PF01634 ATP phosphoribosyltransferase N3115_01565 PF02203 Tar ligand binding domain homologue N3115_01565 PF00672 HAMP domain N3115_01565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_01575 PF00579 tRNA synthetases class I (W and Y) N3115_01580 PF00593 TonB dependent receptor N3115_01590 PF02659 Putative manganese efflux pump N3115_01600 PF01545 Cation efflux family N3115_01605 PF02403 Seryl-tRNA synthetase N-terminal domain N3115_01605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N3115_01610 PF01578 Cytochrome C assembly protein N3115_01610 PF05140 ResB-like family N3115_01615 PF02335 Cytochrome c552 N3115_01620 PF03264 NapC/NirT cytochrome c family, N-terminal region N3115_01630 PF10442 FIST C domain N3115_01630 PF08495 FIST N domain N3115_01630 PF00990 Diguanylate cyclase, GGDEF domain N3115_01630 PF00563 EAL domain N3115_01635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_01635 PF08447 PAS fold N3115_01655 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) N3115_01660 PF12801 4Fe-4S binding domain N3115_01660 PF00037 4Fe-4S binding domain N3115_01665 PF12838 4Fe-4S dicluster domain N3115_01665 PF12800 4Fe-4S binding domain N3115_01670 PF01568 Molydopterin dinucleotide binding domain N3115_01670 PF00384 Molybdopterin oxidoreductase N3115_01670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N3115_01670 PF10518 TAT (twin-arginine translocation) pathway signal sequence N3115_01675 PF03480 Bacterial extracellular solute-binding protein, family 7 N3115_01680 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component N3115_01685 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N3115_01690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_01690 PF08447 PAS fold N3115_01690 PF08448 PAS fold N3115_01695 PF00072 Response regulator receiver domain N3115_01700 PF03737 Aldolase/RraA N3115_01705 PF10414 Sirohaem synthase dimerisation region N3115_01705 PF14824 Sirohaem biosynthesis protein central N3115_01705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N3115_01720 PF00591 Glycosyl transferase family, a/b domain N3115_01720 PF02885 Glycosyl transferase family, helical bundle domain N3115_01725 PF04055 Radical SAM superfamily N3115_01725 PF06463 Molybdenum Cofactor Synthesis C N3115_01730 PF00312 Ribosomal protein S15 N3115_01745 PF13380 CoA binding domain N3115_01750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_01750 PF00512 His Kinase A (phospho-acceptor) domain N3115_01750 PF08521 Two-component sensor kinase N-terminal N3115_01755 PF00486 Transcriptional regulatory protein, C terminal N3115_01755 PF00072 Response regulator receiver domain N3115_01760 PF00639 PPIC-type PPIASE domain N3115_01765 PF01116 Fructose-bisphosphate aldolase class-II N3115_01770 PF00171 Aldehyde dehydrogenase family N3115_01780 PF02472 Biopolymer transport protein ExbD/TolR N3115_01785 PF01618 MotA/TolQ/ExbB proton channel family N3115_01795 PF01202 Shikimate kinase N3115_01800 PF00815 Histidinol dehydrogenase N3115_01810 PF00348 Polyprenyl synthetase N3115_01815 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain N3115_01815 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain N3115_01815 PF01488 Shikimate / quinate 5-dehydrogenase N3115_01820 PF03129 Anticodon binding domain N3115_01820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N3115_01820 PF04073 Aminoacyl-tRNA editing domain N3115_01825 PF00924 Mechanosensitive ion channel N3115_01825 PF05552 Conserved TM helix N3115_01830 PF12627 Probable RNA and SrmB- binding site of polymerase A N3115_01830 PF01743 Poly A polymerase head domain N3115_01830 PF01966 HD domain N3115_01850 PF02699 Preprotein translocase subunit N3115_01855 PF02355 Protein export membrane protein N3115_01860 PF02355 Protein export membrane protein N3115_01860 PF07549 SecD/SecF GG Motif N3115_01875 PF13677 Membrane MotB of proton-channel complex MotA/MotB N3115_01875 PF00691 OmpA family N3115_01880 PF01618 MotA/TolQ/ExbB proton channel family N3115_01890 PF00133 tRNA synthetases class I (I, L, M and V) N3115_01890 PF13603 Leucyl-tRNA synthetase, Domain 2 N3115_01890 PF09334 tRNA synthetases class I (M) N3115_01900 PF08245 Mur ligase middle domain N3115_01930 PF03461 TRCF domain N3115_01930 PF00271 Helicase conserved C-terminal domain N3115_01930 PF00270 DEAD/DEAH box helicase N3115_01930 PF17757 UvrB interaction domain N3115_01930 PF02559 CarD-like/TRCF domain N3115_01950 PF00072 Response regulator receiver domain N3115_01950 PF00486 Transcriptional regulatory protein, C terminal N3115_01965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_01965 PF02743 Cache domain N3115_01965 PF00672 HAMP domain N3115_01970 PF02954 Bacterial regulatory protein, Fis family N3115_01970 PF00072 Response regulator receiver domain N3115_01970 PF00158 Sigma-54 interaction domain N3115_01980 PF13426 PAS domain N3115_01980 PF00672 HAMP domain N3115_01980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_01980 PF00512 His Kinase A (phospho-acceptor) domain N3115_01985 PF13277 YmdB-like protein N3115_02025 PF01209 ubiE/COQ5 methyltransferase family N3115_02030 PF13742 OB-fold nucleic acid binding domain N3115_02030 PF02601 Exonuclease VII, large subunit N3115_02035 PF01584 CheW-like domain N3115_02040 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N3115_02045 PF02261 Aspartate decarboxylase N3115_02050 PF02575 YbaB/EbfC DNA-binding family N3115_02055 PF00348 Polyprenyl synthetase N3115_02060 PF00166 Chaperonin 10 Kd subunit N3115_02065 PF00118 TCP-1/cpn60 chaperonin family N3115_02070 PF18719 ArlS sensor domain N3115_02070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_02070 PF00512 His Kinase A (phospho-acceptor) domain N3115_02075 PF00072 Response regulator receiver domain N3115_02075 PF00486 Transcriptional regulatory protein, C terminal N3115_02080 PF00149 Calcineurin-like phosphoesterase N3115_02105 PF00005 ABC transporter N3115_02120 PF00459 Inositol monophosphatase family N3115_02125 PF01380 SIS domain N3115_02130 PF00438 S-adenosylmethionine synthetase, N-terminal domain N3115_02130 PF02773 S-adenosylmethionine synthetase, C-terminal domain N3115_02130 PF02772 S-adenosylmethionine synthetase, central domain N3115_02135 PF01039 Carboxyl transferase domain N3115_02135 PF17848 Acetyl-coA carboxylase zinc finger domain N3115_02140 PF02581 Thiamine monophosphate synthase N3115_02145 PF02590 Predicted SPOUT methyltransferase N3115_02155 PF01207 Dihydrouridine synthase (Dus) N3115_02165 PF00004 ATPase family associated with various cellular activities (AAA) N3115_02165 PF17862 AAA+ lid domain N3115_02165 PF01434 Peptidase family M41 N3115_02180 PF00682 HMGL-like N3115_02180 PF08502 LeuA allosteric (dimerisation) domain N3115_02185 PF00085 Thioredoxin N3115_02195 PF00488 MutS domain V N3115_02195 PF05190 MutS family domain IV N3115_02195 PF05192 MutS domain III N3115_02195 PF05188 MutS domain II N3115_02195 PF01624 MutS domain I N3115_02215 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit N3115_02225 PF03412 Peptidase C39 family N3115_02225 PF00005 ABC transporter N3115_02225 PF00664 ABC transporter transmembrane region N3115_02235 PF01266 FAD dependent oxidoreductase N3115_02240 PF00990 Diguanylate cyclase, GGDEF domain N3115_02245 PF00977 Histidine biosynthesis protein N3115_02255 PF08338 Domain of unknown function (DUF1731) N3115_02255 PF01370 NAD dependent epimerase/dehydratase family N3115_02260 PF00117 Glutamine amidotransferase class-I N3115_02275 PF00679 Elongation factor G C-terminus N3115_02275 PF00009 Elongation factor Tu GTP binding domain N3115_02275 PF03144 Elongation factor Tu domain 2 N3115_02275 PF06421 GTP-binding protein LepA C-terminus N3115_02280 PF02583 Metal-sensitive transcriptional repressor N3115_02290 PF00403 Heavy-metal-associated domain N3115_02295 PF00691 OmpA family N3115_02295 PF05736 OprF membrane domain N3115_02300 PF14572 Phosphoribosyl synthetase-associated domain N3115_02300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase N3115_02320 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) N3115_02325 PF00557 Metallopeptidase family M24 N3115_02325 PF01321 Creatinase/Prolidase N-terminal domain N3115_02330 PF01220 Dehydroquinase class II N3115_02335 PF01979 Amidohydrolase family N3115_02340 PF01343 Peptidase family S49 N3115_02345 PF00871 Acetokinase family N3115_02350 PF01515 Phosphate acetyl/butaryl transferase N3115_02355 PF00871 Acetokinase family N3115_02365 PF00871 Acetokinase family N3115_02370 PF14480 DNA polymerase III polC-type N-terminus I N3115_02370 PF00929 Exonuclease N3115_02370 PF11490 DNA polymerase III polC-type N-terminus II N3115_02370 PF07733 Bacterial DNA polymerase III alpha NTPase domain N3115_02370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N3115_02370 PF14579 Helix-hairpin-helix motif N3115_02370 PF02811 PHP domain N3115_02380 PF00474 Sodium:solute symporter family N3115_02390 PF00474 Sodium:solute symporter family N3115_02400 PF00929 Exonuclease N3115_02400 PF02811 PHP domain N3115_02400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N3115_02400 PF14579 Helix-hairpin-helix motif N3115_02400 PF07733 Bacterial DNA polymerase III alpha NTPase domain N3115_02400 PF11490 DNA polymerase III polC-type N-terminus II N3115_02410 PF00474 Sodium:solute symporter family N3115_02420 PF00486 Transcriptional regulatory protein, C terminal N3115_02420 PF00072 Response regulator receiver domain N3115_02425 PF00512 His Kinase A (phospho-acceptor) domain N3115_02425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_02425 PF00672 HAMP domain N3115_02425 PF13426 PAS domain N3115_02470 PF02464 Competence-damaged protein N3115_02470 PF18146 Damage-inducible protein CinA KH domain N3115_02470 PF00994 Probable molybdopterin binding domain N3115_02475 PF06039 Malate:quinone oxidoreductase (Mqo) N3115_02480 PF08264 Anticodon-binding domain of tRNA N3115_02480 PF00133 tRNA synthetases class I (I, L, M and V) N3115_02495 PF02875 Mur ligase family, glutamate ligase domain N3115_02495 PF08245 Mur ligase middle domain N3115_02510 PF00248 Aldo/keto reductase family N3115_02515 PF01384 Phosphate transporter family N3115_02520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_02520 PF00672 HAMP domain N3115_02520 PF02203 Tar ligand binding domain homologue N3115_02530 PF02203 Tar ligand binding domain homologue N3115_02530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_02530 PF00672 HAMP domain N3115_02535 PF03061 Thioesterase superfamily N3115_02545 PF01435 Peptidase family M48 N3115_02545 PF16491 CAAX prenyl protease N-terminal, five membrane helices N3115_02550 PF02646 RmuC family N3115_02560 PF03453 MoeA N-terminal region (domain I and II) N3115_02560 PF00994 Probable molybdopterin binding domain N3115_02560 PF03454 MoeA C-terminal region (domain IV) N3115_02570 PF01171 PP-loop family N3115_02590 PF00318 Ribosomal protein S2 N3115_02595 PF00889 Elongation factor TS N3115_02600 PF00005 ABC transporter N3115_02610 PF00625 Guanylate kinase N3115_02615 PF00563 EAL domain N3115_02615 PF00990 Diguanylate cyclase, GGDEF domain N3115_02615 PF08448 PAS fold N3115_02620 PF00403 Heavy-metal-associated domain N3115_02635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N3115_02635 PF00005 ABC transporter N3115_02640 PF00762 Ferrochelatase N3115_02645 PF07670 Nucleoside recognition N3115_02645 PF02421 Ferrous iron transport protein B N3115_02645 PF07664 Ferrous iron transport protein B C terminus N3115_02655 PF02698 DUF218 domain N3115_02660 PF00005 ABC transporter N3115_02665 PF00950 ABC 3 transport family N3115_02670 PF17783 CvfB-like winged helix domain N3115_02670 PF13509 S1 domain N3115_02675 PF08534 Redoxin N3115_02695 PF00580 UvrD/REP helicase N-terminal domain N3115_02695 PF13361 UvrD-like helicase C-terminal domain N3115_02700 PF00999 Sodium/hydrogen exchanger family N3115_02700 PF02080 TrkA-C domain N3115_02700 PF02254 TrkA-N domain N3115_02705 PF08264 Anticodon-binding domain of tRNA N3115_02705 PF00133 tRNA synthetases class I (I, L, M and V) N3115_02705 PF10458 Valyl tRNA synthetase tRNA binding arm N3115_02715 PF09962 Uncharacterized conserved protein (DUF2196) N3115_02725 PF07690 Major Facilitator Superfamily N3115_02730 PF01725 Ham1 family N3115_02750 PF14748 Pyrroline-5-carboxylate reductase dimerisation N3115_02750 PF03807 NADP oxidoreductase coenzyme F420-dependent N3115_02755 PF13525 Outer membrane lipoprotein N3115_02760 PF00004 ATPase family associated with various cellular activities (AAA) N3115_02760 PF05362 Lon protease (S16) C-terminal proteolytic domain N3115_02760 PF02190 ATP-dependent protease La (LON) substrate-binding domain N3115_02770 PF01451 Low molecular weight phosphotyrosine protein phosphatase N3115_02775 PF01047 MarR family N3115_02785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_02785 PF08447 PAS fold N3115_02785 PF13426 PAS domain N3115_02805 PF02785 Biotin carboxylase C-terminal domain N3115_02805 PF00289 Biotin carboxylase, N-terminal domain N3115_02805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N3115_02810 PF01883 Iron-sulfur cluster assembly protein N3115_02815 PF02657 Fe-S metabolism associated domain N3115_02820 PF00266 Aminotransferase class-V N3115_02830 PF00005 ABC transporter N3115_02835 PF01458 Uncharacterized protein family (UPF0051) N3115_02840 PF00266 Aminotransferase class-V N3115_02845 PF04324 BFD-like [2Fe-2S] binding domain N3115_02845 PF01106 NifU-like domain N3115_02845 PF01592 NifU-like N terminal domain N3115_02850 PF03448 MgtE intracellular N domain N3115_02850 PF01769 Divalent cation transporter N3115_02850 PF00571 CBS domain N3115_02855 PF07694 5TMR of 5TMR-LYT N3115_02855 PF00990 Diguanylate cyclase, GGDEF domain N3115_02860 PF14698 Argininosuccinate lyase C-terminal N3115_02860 PF00206 Lyase N3115_02865 PF01584 CheW-like domain N3115_02865 PF00072 Response regulator receiver domain N3115_02870 PF00899 ThiF family N3115_02875 PF03449 Transcription elongation factor, N-terminal N3115_02875 PF01272 Transcription elongation factor, GreA/GreB, C-term N3115_02885 PF17757 UvrB interaction domain N3115_02885 PF12344 Ultra-violet resistance protein B N3115_02885 PF02151 UvrB/uvrC motif N3115_02885 PF00271 Helicase conserved C-terminal domain N3115_02885 PF04851 Type III restriction enzyme, res subunit N3115_02890 PF00633 Helix-hairpin-helix motif N3115_02890 PF10576 Iron-sulfur binding domain of endonuclease III N3115_02890 PF00730 HhH-GPD superfamily base excision DNA repair protein N3115_02910 PF00872 Transposase, Mutator family N3115_02920 PF00672 HAMP domain N3115_02920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_02920 PF02203 Tar ligand binding domain homologue N3115_02955 PF02502 Ribose/Galactose Isomerase N3115_02960 PF10502 Signal peptidase, peptidase S26 N3115_02965 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain N3115_02965 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain N3115_02970 PF01386 Ribosomal L25p family N3115_02970 PF14693 Ribosomal protein TL5, C-terminal domain N3115_02975 PF01195 Peptidyl-tRNA hydrolase N3115_02990 PF01520 N-acetylmuramoyl-L-alanine amidase N3115_03000 PF01479 S4 domain N3115_03000 PF00579 tRNA synthetases class I (W and Y) N3115_03005 PF13291 ACT domain N3115_03005 PF04607 Region found in RelA / SpoT proteins N3115_03005 PF02824 TGS domain N3115_03010 PF01192 RNA polymerase Rpb6 N3115_03015 PF00696 Amino acid kinase family N3115_03025 PF04166 Pyridoxal phosphate biosynthetic protein PdxA N3115_03030 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ N3115_03035 PF04715 Anthranilate synthase component I, N terminal region N3115_03035 PF00425 chorismate binding enzyme N3115_03045 PF00464 Serine hydroxymethyltransferase N3115_03050 PF00152 tRNA synthetases class II (D, K and N) N3115_03050 PF01336 OB-fold nucleic acid binding domain N3115_03060 PF04551 GcpE protein N3115_03065 PF00990 Diguanylate cyclase, GGDEF domain N3115_03070 PF00772 DnaB-like helicase N terminal domain N3115_03070 PF03796 DnaB-like helicase C terminal domain N3115_03080 PF02719 Polysaccharide biosynthesis protein N3115_03085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N3115_03095 PF08666 SAF domain N3115_03095 PF03102 NeuB family N3115_03100 PF02350 UDP-N-acetylglucosamine 2-epimerase N3115_03105 PF00483 Nucleotidyl transferase N3115_03110 PF02348 Cytidylyltransferase N3115_03115 PF00202 Aminotransferase class-III N3115_03125 PF00117 Glutamine amidotransferase class-I N3115_03130 PF00977 Histidine biosynthesis protein N3115_03140 PF00795 Carbon-nitrogen hydrolase N3115_03160 PF00132 Bacterial transferase hexapeptide (six repeats) N3115_03165 PF01370 NAD dependent epimerase/dehydratase family N3115_03180 PF01370 NAD dependent epimerase/dehydratase family N3115_03190 PF08485 Polysaccharide biosynthesis protein C-terminal N3115_03190 PF02719 Polysaccharide biosynthesis protein N3115_03195 PF02350 UDP-N-acetylglucosamine 2-epimerase N3115_03200 PF04321 RmlD substrate binding domain N3115_03210 PF01370 NAD dependent epimerase/dehydratase family N3115_03215 PF00953 Glycosyl transferase family 4 N3115_03220 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase N3115_03225 PF02719 Polysaccharide biosynthesis protein N3115_03235 PF01068 ATP dependent DNA ligase domain N3115_03235 PF14743 DNA ligase OB-like domain N3115_03240 PF00156 Phosphoribosyl transferase domain N3115_03245 PF00291 Pyridoxal-phosphate dependent enzyme N3115_03255 PF02789 Cytosol aminopeptidase family, N-terminal domain N3115_03255 PF00883 Cytosol aminopeptidase family, catalytic domain N3115_03265 PF02472 Biopolymer transport protein ExbD/TolR N3115_03270 PF01618 MotA/TolQ/ExbB proton channel family N3115_03285 PF00005 ABC transporter N3115_03285 PF12704 MacB-like periplasmic core domain N3115_03285 PF02687 FtsX-like permease family N3115_03290 PF00005 ABC transporter N3115_03290 PF02687 FtsX-like permease family N3115_03290 PF12704 MacB-like periplasmic core domain N3115_03335 PF01475 Ferric uptake regulator family N3115_03345 PF00206 Lyase N3115_03345 PF10415 Fumarase C C-terminus N3115_03355 PF13426 PAS domain N3115_03355 PF07568 Histidine kinase N3115_03355 PF13581 Histidine kinase-like ATPase domain N3115_03360 PF00072 Response regulator receiver domain N3115_03365 PF07715 TonB-dependent Receptor Plug Domain N3115_03365 PF00593 TonB dependent receptor N3115_03385 PF02554 Carbon starvation protein CstA N3115_03385 PF13722 5TM C-terminal transporter carbon starvation CstA N3115_03390 PF06071 Protein of unknown function (DUF933) N3115_03390 PF01926 50S ribosome-binding GTPase N3115_03410 PF06865 Pyrimidine/purine nucleoside phosphorylase N3115_03420 PF00586 AIR synthase related protein, N-terminal domain N3115_03420 PF02769 AIR synthase related protein, C-terminal domain N3115_03425 PF01142 tRNA pseudouridine synthase D (TruD) N3115_03435 PF00672 HAMP domain N3115_03435 PF02203 Tar ligand binding domain homologue N3115_03435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_03440 PF01330 RuvA N terminal domain N3115_03440 PF07499 RuvA, C-terminal domain N3115_03445 PF01820 D-ala D-ala ligase N-terminus N3115_03445 PF07478 D-ala D-ala ligase C-terminus N3115_03455 PF08245 Mur ligase middle domain N3115_03455 PF02875 Mur ligase family, glutamate ligase domain N3115_03470 PF00338 Ribosomal protein S10p/S20e N3115_03475 PF00297 Ribosomal protein L3 N3115_03480 PF00573 Ribosomal protein L4/L1 family N3115_03485 PF00276 Ribosomal protein L23 N3115_03490 PF03947 Ribosomal Proteins L2, C-terminal domain N3115_03490 PF00181 Ribosomal Proteins L2, RNA binding domain N3115_03495 PF00203 Ribosomal protein S19 N3115_03500 PF00237 Ribosomal protein L22p/L17e N3115_03505 PF07650 KH domain N3115_03505 PF00189 Ribosomal protein S3, C-terminal domain N3115_03510 PF00252 Ribosomal protein L16p/L10e N3115_03515 PF00831 Ribosomal L29 protein N3115_03520 PF00366 Ribosomal protein S17 N3115_03525 PF00238 Ribosomal protein L14p/L23e N3115_03530 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 N3115_03530 PF00467 KOW motif N3115_03535 PF00673 ribosomal L5P family C-terminus N3115_03535 PF00281 Ribosomal protein L5 N3115_03540 PF00253 Ribosomal protein S14p/S29e N3115_03545 PF00410 Ribosomal protein S8 N3115_03550 PF00347 Ribosomal protein L6 N3115_03555 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast N3115_03560 PF00333 Ribosomal protein S5, N-terminal domain N3115_03560 PF03719 Ribosomal protein S5, C-terminal domain N3115_03565 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A N3115_03570 PF00344 SecY translocase N3115_03575 PF00557 Metallopeptidase family M24 N3115_03580 PF01176 Translation initiation factor 1A / IF-1 N3115_03585 PF03167 Uracil DNA glycosylase superfamily N3115_03595 PF01336 OB-fold nucleic acid binding domain N3115_03595 PF00152 tRNA synthetases class II (D, K and N) N3115_03595 PF02938 GAD domain N3115_03605 PF04055 Radical SAM superfamily N3115_03605 PF08497 Radical SAM N-terminal N3115_03610 PF05191 Adenylate kinase, active site lid N3115_03625 PF08240 Alcohol dehydrogenase GroES-like domain N3115_03625 PF00107 Zinc-binding dehydrogenase N3115_03630 PF00465 Iron-containing alcohol dehydrogenase N3115_03635 PF00672 HAMP domain N3115_03635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_03635 PF02203 Tar ligand binding domain homologue N3115_03640 PF01168 Alanine racemase, N-terminal domain N3115_03640 PF00842 Alanine racemase, C-terminal domain N3115_03645 PF01541 GIY-YIG catalytic domain N3115_03645 PF02151 UvrB/uvrC motif N3115_03645 PF08459 UvrC Helix-hairpin-helix N-terminal N3115_03650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_03650 PF00672 HAMP domain N3115_03650 PF02203 Tar ligand binding domain homologue N3115_03655 PF00486 Transcriptional regulatory protein, C terminal N3115_03655 PF00072 Response regulator receiver domain N3115_03660 PF00990 Diguanylate cyclase, GGDEF domain N3115_03660 PF00072 Response regulator receiver domain N3115_03665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_03665 PF00512 His Kinase A (phospho-acceptor) domain N3115_03665 PF09308 LuxQ, periplasmic N3115_03665 PF00072 Response regulator receiver domain N3115_03670 PF13344 Haloacid dehalogenase-like hydrolase N3115_03670 PF00293 NUDIX domain N3115_03685 PF02653 Branched-chain amino acid transport system / permease component N3115_03695 PF00005 ABC transporter N3115_03695 PF12399 Branched-chain amino acid ATP-binding cassette transporter N3115_03700 PF00005 ABC transporter N3115_03710 PF01774 UreD urease accessory protein N3115_03715 PF00547 Urease, gamma subunit N3115_03715 PF00699 Urease beta subunit N3115_03720 PF01979 Amidohydrolase family N3115_03720 PF00449 Urease alpha-subunit, N-terminal domain N3115_03725 PF05194 UreE urease accessory protein, C-terminal domain N3115_03735 PF02492 CobW/HypB/UreG, nucleotide-binding domain N3115_03755 PF00873 AcrB/AcrD/AcrF family N3115_03760 PF00529 HlyD membrane-fusion protein of T1SS N3115_03760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3115_03780 PF03372 Endonuclease/Exonuclease/phosphatase family N3115_03790 PF11008 Protein of unknown function (DUF2846) N3115_03805 PF08212 Lipocalin-like domain N3115_03820 PF03109 ABC1 family N3115_03830 PF00563 EAL domain N3115_03830 PF12792 CSS motif domain associated with EAL N3115_03835 PF04397 LytTr DNA-binding domain N3115_03835 PF00072 Response regulator receiver domain N3115_03840 PF13492 GAF domain N3115_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_03840 PF06580 Histidine kinase N3115_03840 PF07694 5TMR of 5TMR-LYT N3115_03845 PF01593 Flavin containing amine oxidoreductase N3115_03850 PF00875 DNA photolyase N3115_03850 PF03441 FAD binding domain of DNA photolyase N3115_03870 PF00342 Phosphoglucose isomerase N3115_03875 PF00483 Nucleotidyl transferase N3115_03880 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N3115_03880 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N3115_03880 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N3115_03880 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N3115_03910 PF00672 HAMP domain N3115_03910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_03910 PF02203 Tar ligand binding domain homologue N3115_03915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_03915 PF08447 PAS fold N3115_03920 PF01361 Tautomerase enzyme N3115_03925 PF03466 LysR substrate binding domain N3115_03925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3115_03930 PF00218 Indole-3-glycerol phosphate synthase N3115_03940 PF03692 Putative zinc- or iron-chelating domain N3115_03945 PF05175 Methyltransferase small domain N3115_03955 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II N3115_03955 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg N3115_03955 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase N3115_03960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N3115_03970 PF14480 DNA polymerase III polC-type N-terminus I N3115_03970 PF07733 Bacterial DNA polymerase III alpha NTPase domain N3115_03970 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N3115_03970 PF14579 Helix-hairpin-helix motif N3115_03970 PF02811 PHP domain N3115_03970 PF00929 Exonuclease N3115_03970 PF11490 DNA polymerase III polC-type N-terminus II N3115_03975 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase N3115_03980 PF00834 Ribulose-phosphate 3 epimerase family N3115_03985 PF02253 Phospholipase A1 N3115_03995 PF00293 NUDIX domain N3115_04000 PF04461 Protein of unknown function (DUF520) N3115_04010 PF04241 Protein of unknown function (DUF423) N3115_04015 PF00156 Phosphoribosyl transferase domain N3115_04030 PF01168 Alanine racemase, N-terminal domain N3115_04035 PF02163 Peptidase family M50 N3115_04035 PF17820 PDZ domain N3115_04040 PF01066 CDP-alcohol phosphatidyltransferase N3115_04050 PF00701 Dihydrodipicolinate synthetase family N3115_04060 PF01180 Dihydroorotate dehydrogenase N3115_04065 PF00664 ABC transporter transmembrane region N3115_04065 PF00005 ABC transporter N3115_04070 PF03023 Lipid II flippase MurJ N3115_04085 PF02130 Uncharacterized protein family UPF0054 N3115_04095 PF03575 Peptidase family S51 N3115_04100 PF18073 Rubredoxin metal binding domain N3115_04105 PF05728 Uncharacterised protein family (UPF0227) N3115_04115 PF00448 SRP54-type protein, GTPase domain N3115_04120 PF00578 AhpC/TSA family N3115_04125 PF01812 5-formyltetrahydrofolate cyclo-ligase family N3115_04130 PF00013 KH domain N3115_04130 PF01966 HD domain N3115_04130 PF12072 Domain of unknown function (DUF3552) N3115_04140 PF12911 N-terminal TM domain of oligopeptide transport permease C N3115_04140 PF00528 Binding-protein-dependent transport system inner membrane component N3115_04165 PF00106 short chain dehydrogenase N3115_04185 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N3115_04195 PF00486 Transcriptional regulatory protein, C terminal N3115_04195 PF00072 Response regulator receiver domain N3115_04200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_04205 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain N3115_04205 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain N3115_04210 PF00990 Diguanylate cyclase, GGDEF domain N3115_04215 PF09424 Yqey-like protein N3115_04220 PF12848 ABC transporter N3115_04220 PF00005 ABC transporter N3115_04220 PF16326 ABC transporter C-terminal domain N3115_04230 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3115_04235 PF00561 alpha/beta hydrolase fold N3115_04265 PF02696 Uncharacterized ACR, YdiU/UPF0061 family N3115_04270 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin N3115_04275 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system N3115_04285 PF00958 GMP synthase C terminal domain N3115_04285 PF00117 Glutamine amidotransferase class-I N3115_04285 PF02540 NAD synthase N3115_04290 PF00890 FAD binding domain N3115_04300 PF01863 Protein of unknown function DUF45 N3115_04305 PF00155 Aminotransferase class I and II N3115_04310 PF16916 Dimerisation domain of Zinc Transporter N3115_04310 PF01545 Cation efflux family N3115_04315 PF00072 Response regulator receiver domain N3115_04315 PF01966 HD domain N3115_04320 PF00211 Adenylate and Guanylate cyclase catalytic domain N3115_04345 PF03062 MBOAT, membrane-bound O-acyltransferase family N3115_04355 PF07690 Major Facilitator Superfamily N3115_04365 PF13190 PDGLE domain N3115_04365 PF01891 Cobalt uptake substrate-specific transmembrane region N3115_04380 PF00005 ABC transporter N3115_04410 PF01594 AI-2E family transporter N3115_04435 PF17760 UvrA interaction domain N3115_04435 PF17755 UvrA DNA-binding domain N3115_04445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_04445 PF08447 PAS fold N3115_04450 PF01925 Sulfite exporter TauE/SafE N3115_04455 PF00132 Bacterial transferase hexapeptide (six repeats) N3115_04455 PF06426 Serine acetyltransferase, N-terminal N3115_04460 PF17944 Arginine decarboxylase C-terminal helical extension N3115_04460 PF17810 Arginine decarboxylase helical bundle domain N3115_04460 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N3115_04465 PF03129 Anticodon binding domain N3115_04465 PF13393 Histidyl-tRNA synthetase N3115_04470 PF02223 Thymidylate kinase N3115_04475 PF01467 Cytidylyltransferase-like N3115_04480 PF02441 Flavoprotein N3115_04490 PF03948 Ribosomal protein L9, C-terminal domain N3115_04490 PF01281 Ribosomal protein L9, N-terminal domain N3115_04495 PF00227 Proteasome subunit N3115_04500 PF07724 AAA domain (Cdc48 subfamily) N3115_04500 PF10431 C-terminal, D2-small domain, of ClpB protein N3115_04510 PF01026 TatD related DNase N3115_04520 PF03330 Lytic transglycolase N3115_04520 PF05036 Sporulation related domain N3115_04525 PF00475 Imidazoleglycerol-phosphate dehydratase N3115_04545 PF01926 50S ribosome-binding GTPase N3115_04550 PF00583 Acetyltransferase (GNAT) family N3115_04570 PF01118 Semialdehyde dehydrogenase, NAD binding domain N3115_04575 PF00392 Bacterial regulatory proteins, gntR family N3115_04575 PF00155 Aminotransferase class I and II N3115_04590 PF00873 AcrB/AcrD/AcrF family N3115_04595 PF00873 AcrB/AcrD/AcrF family N3115_04600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3115_04610 PF11849 Domain of unknown function (DUF3369) N3115_04615 PF00813 FliP family N3115_04620 PF00905 Penicillin binding protein transpeptidase domain N3115_04620 PF03717 Penicillin-binding Protein dimerisation domain N3115_04640 PF00005 ABC transporter N3115_04645 PF02390 Putative methyltransferase N3115_04650 PF02903 Alpha amylase, N-terminal ig-like domain N3115_04650 PF00128 Alpha amylase, catalytic domain N3115_04655 PF01479 S4 domain N3115_04655 PF00849 RNA pseudouridylate synthase N3115_04660 PF01098 Cell cycle protein N3115_04670 PF00202 Aminotransferase class-III N3115_04675 PF06865 Pyrimidine/purine nucleoside phosphorylase N3115_04695 PF00140 Sigma-70 factor, region 1.2 N3115_04695 PF04542 Sigma-70 region 2 N3115_04695 PF04539 Sigma-70 region 3 N3115_04695 PF04545 Sigma-70, region 4 N3115_04700 PF00694 Aconitase C-terminal domain N3115_04705 PF00180 Isocitrate/isopropylmalate dehydrogenase N3115_04720 PF00444 Ribosomal protein L36 N3115_04725 PF00416 Ribosomal protein S13/S18 N3115_04730 PF00411 Ribosomal protein S11 N3115_04735 PF00163 Ribosomal protein S4/S9 N-terminal domain N3115_04735 PF01479 S4 domain N3115_04740 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain N3115_04740 PF01000 RNA polymerase Rpb3/RpoA insert domain N3115_04740 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain N3115_04745 PF01196 Ribosomal protein L17 N3115_04750 PF01425 Amidase N3115_04755 PF00478 IMP dehydrogenase / GMP reductase domain N3115_04755 PF00571 CBS domain N3115_04770 PF01556 DnaJ C terminal domain N3115_04770 PF00684 DnaJ central domain N3115_04770 PF00226 DnaJ domain N3115_04780 PF00933 Glycosyl hydrolase family 3 N terminal domain N3115_04785 PF00005 ABC transporter N3115_04790 PF08240 Alcohol dehydrogenase GroES-like domain N3115_04790 PF00107 Zinc-binding dehydrogenase N3115_04810 PF01638 HxlR-like helix-turn-helix N3115_04815 PF02525 Flavodoxin-like fold N3115_04825 PF00893 Small Multidrug Resistance protein N3115_04840 PF01161 Phosphatidylethanolamine-binding protein N3115_04845 PF03466 LysR substrate binding domain N3115_04845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3115_04850 PF03601 Conserved hypothetical protein 698 N3115_04860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N3115_04860 PF02770 Acyl-CoA dehydrogenase, middle domain N3115_04860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N3115_04880 PF01638 HxlR-like helix-turn-helix N3115_04885 PF02525 Flavodoxin-like fold N3115_04890 PF00881 Nitroreductase family N3115_04900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N3115_04915 PF00881 Nitroreductase family N3115_04925 PF00005 ABC transporter N3115_04925 PF12848 ABC transporter N3115_04930 PF03061 Thioesterase superfamily N3115_04935 PF00672 HAMP domain N3115_04935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_04935 PF02203 Tar ligand binding domain homologue N3115_04940 PF00533 BRCA1 C Terminus (BRCT) domain N3115_04940 PF01653 NAD-dependent DNA ligase adenylation domain N3115_04940 PF12826 Helix-hairpin-helix motif N3115_04940 PF03120 NAD-dependent DNA ligase OB-fold domain N3115_04945 PF03738 Glutathionylspermidine synthase preATP-grasp N3115_04955 PF01966 HD domain N3115_04955 PF13286 Phosphohydrolase-associated domain N3115_04980 PF02384 N-6 DNA Methylase N3115_04980 PF12161 HsdM N-terminal domain N3115_04985 PF01420 Type I restriction modification DNA specificity domain N3115_05025 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) N3115_05025 PF11867 Domain of unknown function (DUF3387) N3115_05025 PF18766 SWI2/SNF2 ATPase N3115_05035 PF13614 AAA domain N3115_05045 PF00872 Transposase, Mutator family N3115_05050 PF00672 HAMP domain N3115_05050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_05050 PF02203 Tar ligand binding domain homologue N3115_05055 PF00672 HAMP domain N3115_05055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_05055 PF02203 Tar ligand binding domain homologue N3115_05060 PF08668 HDOD domain N3115_05065 PF00072 Response regulator receiver domain N3115_05065 PF00486 Transcriptional regulatory protein, C terminal N3115_05080 PF02203 Tar ligand binding domain homologue N3115_05080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_05080 PF00672 HAMP domain N3115_05095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_05095 PF08447 PAS fold N3115_05095 PF08448 PAS fold N3115_05105 PF00239 Resolvase, N terminal domain N3115_05105 PF02796 Helix-turn-helix domain of resolvase N3115_05110 PF00149 Calcineurin-like phosphoesterase N3115_05110 PF12320 Type 5 capsule protein repressor C-terminal domain N3115_05115 PF13476 AAA domain N3115_05160 PF00570 HRDC domain N3115_05160 PF09382 RQC domain N3115_05160 PF16124 RecQ zinc-binding N3115_05160 PF00271 Helicase conserved C-terminal domain N3115_05160 PF00270 DEAD/DEAH box helicase N3115_05255 PF08501 Shikimate dehydrogenase substrate binding domain N3115_05265 PF02578 Multi-copper polyphenol oxidoreductase laccase N3115_05270 PF01515 Phosphate acetyl/butaryl transferase N3115_05270 PF00390 Malic enzyme, N-terminal domain N3115_05270 PF03949 Malic enzyme, NAD binding domain N3115_05275 PF01842 ACT domain N3115_05275 PF00551 Formyl transferase N3115_05280 PF00588 SpoU rRNA Methylase family N3115_05305 PF00072 Response regulator receiver domain N3115_05305 PF00486 Transcriptional regulatory protein, C terminal N3115_05315 PF01145 SPFH domain / Band 7 family N3115_05315 PF16200 C-terminal region of band_7 N3115_05340 PF03588 Leucyl/phenylalanyl-tRNA protein transferase N3115_05345 PF00849 RNA pseudouridylate synthase N3115_05345 PF01479 S4 domain N3115_05350 PF13419 Haloacid dehalogenase-like hydrolase N3115_05370 PF00593 TonB dependent receptor N3115_05370 PF07715 TonB-dependent Receptor Plug Domain N3115_05380 PF00005 ABC transporter N3115_05385 PF01032 FecCD transport family N3115_05390 PF00300 Histidine phosphatase superfamily (branch 1) N3115_05395 PF00664 ABC transporter transmembrane region N3115_05395 PF00005 ABC transporter N3115_05405 PF00072 Response regulator receiver domain N3115_05405 PF00486 Transcriptional regulatory protein, C terminal N3115_05410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_05425 PF07196 Flagellin hook IN motif N3115_05425 PF00669 Bacterial flagellin N-terminal helical region N3115_05425 PF00700 Bacterial flagellin C-terminal helical region N3115_05435 PF00271 Helicase conserved C-terminal domain N3115_05435 PF00270 DEAD/DEAH box helicase N3115_05440 PF08447 PAS fold N3115_05440 PF08448 PAS fold N3115_05440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_05445 PF00072 Response regulator receiver domain N3115_05445 PF00486 Transcriptional regulatory protein, C terminal N3115_05450 PF05736 OprF membrane domain N3115_05450 PF00691 OmpA family N3115_05455 PF03412 Peptidase C39 family N3115_05455 PF00005 ABC transporter N3115_05455 PF00664 ABC transporter transmembrane region N3115_05465 PF00196 Bacterial regulatory proteins, luxR family N3115_05465 PF00072 Response regulator receiver domain N3115_05480 PF01761 3-dehydroquinate synthase N3115_05490 PF04055 Radical SAM superfamily N3115_05490 PF00919 Uncharacterized protein family UPF0004 N3115_05495 PF00004 ATPase family associated with various cellular activities (AAA) N3115_05495 PF17862 AAA+ lid domain N3115_05495 PF06480 FtsH Extracellular N3115_05495 PF01434 Peptidase family M41 N3115_05505 PF00994 Probable molybdopterin binding domain N3115_05560 PF18364 Molybdopterin oxidoreductase N-terminal domain N3115_05560 PF00384 Molybdopterin oxidoreductase N3115_05560 PF01568 Molydopterin dinucleotide binding domain N3115_05565 PF00561 alpha/beta hydrolase fold N3115_05570 PF16925 Tetracyclin repressor-like, C-terminal domain N3115_05570 PF00440 Bacterial regulatory proteins, tetR family N3115_05575 PF00488 MutS domain V N3115_05575 PF01713 Smr domain N3115_05580 PF00571 CBS domain N3115_05580 PF03471 Transporter associated domain N3115_05580 PF01595 Cyclin M transmembrane N-terminal domain N3115_05590 PF07687 Peptidase dimerisation domain N3115_05590 PF01546 Peptidase family M20/M25/M40 N3115_05595 PF00909 Ammonium Transporter Family N3115_05600 PF00543 Nitrogen regulatory protein P-II N3115_05610 PF02541 Ppx/GppA phosphatase family N3115_05620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N3115_05620 PF00205 Thiamine pyrophosphate enzyme, central domain N3115_05620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N3115_05625 PF10369 Small subunit of acetolactate synthase N3115_05630 PF00132 Bacterial transferase hexapeptide (six repeats) N3115_05630 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD N3115_05635 PF01580 FtsK/SpoIIIE family N3115_05635 PF17854 FtsK alpha domain N3115_05635 PF09397 Ftsk gamma domain N3115_05640 PF00486 Transcriptional regulatory protein, C terminal N3115_05640 PF00072 Response regulator receiver domain N3115_05655 PF02810 SEC-C motif N3115_05660 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein N3115_05665 PF01926 50S ribosome-binding GTPase N3115_05665 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal N3115_05670 PF01740 STAS domain N3115_05670 PF00916 Sulfate permease family N3115_05680 PF02844 Phosphoribosylglycinamide synthetase, N domain N3115_05680 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain N3115_05680 PF02843 Phosphoribosylglycinamide synthetase, C domain N3115_05690 PF04453 LPS transport system D N3115_05690 PF03968 OstA-like protein N3115_05700 PF00013 KH domain N3115_05700 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain N3115_05700 PF01138 3' exoribonuclease family, domain 1 N3115_05700 PF03725 3' exoribonuclease family, domain 2 N3115_05700 PF00575 S1 RNA binding domain N3115_05705 PF00072 Response regulator receiver domain N3115_05710 PF01627 Hpt domain N3115_05710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_05710 PF09078 CheY binding N3115_05710 PF01584 CheW-like domain N3115_05710 PF02895 Signal transducing histidine kinase, homodimeric domain N3115_05715 PF03705 CheR methyltransferase, all-alpha domain N3115_05715 PF01739 CheR methyltransferase, SAM binding domain N3115_05720 PF03975 CheD chemotactic sensory transduction N3115_05725 PF00072 Response regulator receiver domain N3115_05725 PF01339 CheB methylesterase N3115_05735 PF07690 Major Facilitator Superfamily N3115_05740 PF18644 Phage integrase SAM-like domain N3115_05740 PF00589 Phage integrase family N3115_05760 PF01432 Peptidase family M3 N3115_05765 PF05175 Methyltransferase small domain N3115_05765 PF17827 PrmC N-terminal domain N3115_05770 PF06969 HemN C-terminal domain N3115_05770 PF04055 Radical SAM superfamily N3115_05775 PF00293 NUDIX domain N3115_05780 PF00696 Amino acid kinase family N3115_05780 PF01842 ACT domain N3115_05780 PF13840 ACT domain N3115_05795 PF00809 Pterin binding enzyme N3115_05800 PF02153 Prephenate dehydrogenase N3115_05800 PF01842 ACT domain N3115_05805 PF01103 Surface antigen N3115_05805 PF07244 Surface antigen variable number repeat N3115_05810 PF04055 Radical SAM superfamily N3115_05815 PF05193 Peptidase M16 inactive domain N3115_05820 PF00749 tRNA synthetases class I (E and Q), catalytic domain N3115_05845 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain N3115_05855 PF00133 tRNA synthetases class I (I, L, M and V) N3115_05855 PF09334 tRNA synthetases class I (M) N3115_05855 PF01588 Putative tRNA binding domain N3115_05875 PF02436 Conserved carboxylase domain N3115_05875 PF00682 HMGL-like N3115_05880 PF01293 Phosphoenolpyruvate carboxykinase N3115_05885 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase N3115_05885 PF00925 GTP cyclohydrolase II N3115_05905 PF02092 Glycyl-tRNA synthetase beta subunit N3115_05920 PF02069 Prokaryotic metallothionein N3115_05925 PF02527 rRNA small subunit methyltransferase G N3115_05930 PF00925 GTP cyclohydrolase II N3115_05935 PF00490 Delta-aminolevulinic acid dehydratase N3115_05940 PF08448 PAS fold N3115_05940 PF08447 PAS fold N3115_05940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_05945 PF00072 Response regulator receiver domain N3115_05945 PF00486 Transcriptional regulatory protein, C terminal N3115_05960 PF03477 ATP cone domain N3115_05960 PF02867 Ribonucleotide reductase, barrel domain N3115_05960 PF00317 Ribonucleotide reductase, all-alpha domain N3115_05965 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N3115_05965 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N3115_05970 PF06969 HemN C-terminal domain N3115_05970 PF04055 Radical SAM superfamily N3115_05985 PF02606 Tetraacyldisaccharide-1-P 4'-kinase N3115_05990 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N3115_05995 PF02540 NAD synthase N3115_06010 PF05099 Tellurite resistance protein TerB N3115_06010 PF00226 DnaJ domain N3115_06020 PF00902 Sec-independent protein translocase protein (TatC) N3115_06025 PF02547 Queuosine biosynthesis protein N3115_06030 PF00929 Exonuclease N3115_06045 PF12867 DinB superfamily N3115_06045 PF03781 Sulfatase-modifying factor enzyme 1 N3115_06065 PF02754 Cysteine-rich domain N3115_06065 PF13183 4Fe-4S dicluster domain N3115_06065 PF02665 Nitrate reductase gamma subunit N3115_06070 PF01790 Prolipoprotein diacylglyceryl transferase N3115_06085 PF01367 5'-3' exonuclease, C-terminal SAM fold N3115_06085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N3115_06085 PF01612 3'-5' exonuclease N3115_06085 PF00476 DNA polymerase family A N3115_06090 PF02348 Cytidylyltransferase N3115_06095 PF00990 Diguanylate cyclase, GGDEF domain N3115_06095 PF10442 FIST C domain N3115_06095 PF08495 FIST N domain N3115_06095 PF00563 EAL domain N3115_06100 PF12399 Branched-chain amino acid ATP-binding cassette transporter N3115_06100 PF00005 ABC transporter N3115_06105 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE N3115_06110 PF00591 Glycosyl transferase family, a/b domain N3115_06110 PF02885 Glycosyl transferase family, helical bundle domain N3115_06125 PF00764 Arginosuccinate synthase N3115_06130 PF13193 AMP-binding enzyme C-terminal domain N3115_06130 PF00501 AMP-binding enzyme N3115_06135 PF03062 MBOAT, membrane-bound O-acyltransferase family N3115_06150 PF00550 Phosphopantetheine attachment site N3115_06155 PF00132 Bacterial transferase hexapeptide (six repeats) N3115_06160 PF02080 TrkA-C domain N3115_06160 PF02254 TrkA-N domain N3115_06165 PF02386 Cation transport protein N3115_06170 PF00072 Response regulator receiver domain N3115_06170 PF00486 Transcriptional regulatory protein, C terminal N3115_06175 PF13493 Domain of unknown function (DUF4118) N3115_06175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_06175 PF02702 Osmosensitive K+ channel His kinase sensor domain N3115_06175 PF00512 His Kinase A (phospho-acceptor) domain N3115_06190 PF02132 RecR protein N3115_06190 PF13662 Toprim domain N3115_06195 PF00226 DnaJ domain N3115_06195 PF01556 DnaJ C terminal domain N3115_06195 PF00684 DnaJ central domain N3115_06200 PF00291 Pyridoxal-phosphate dependent enzyme N3115_06220 PF00753 Metallo-beta-lactamase superfamily N3115_06230 PF00990 Diguanylate cyclase, GGDEF domain N3115_06235 PF08003 Protein of unknown function (DUF1698) N3115_06245 PF01578 Cytochrome C assembly protein N3115_06245 PF05140 ResB-like family N3115_06250 PF01546 Peptidase family M20/M25/M40 N3115_06250 PF07687 Peptidase dimerisation domain N3115_06260 PF02203 Tar ligand binding domain homologue N3115_06260 PF00672 HAMP domain N3115_06260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_06275 PF00271 Helicase conserved C-terminal domain N3115_06275 PF02810 SEC-C motif N3115_06275 PF07517 SecA DEAD-like domain N3115_06275 PF01043 SecA preprotein cross-linking domain N3115_06275 PF07516 SecA Wing and Scaffold domain N3115_06280 PF02687 FtsX-like permease family N3115_06280 PF12704 MacB-like periplasmic core domain N3115_06290 PF02618 YceG-like family N3115_06295 PF03971 Monomeric isocitrate dehydrogenase N3115_06300 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain N3115_06300 PF00056 lactate/malate dehydrogenase, NAD binding domain N3115_06325 PF01795 MraW methylase family N3115_06335 PF00216 Bacterial DNA-binding protein N3115_06345 PF02082 Transcriptional regulator N3115_06350 PF00115 Cytochrome C and Quinol oxidase polypeptide I N3115_06360 PF01266 FAD dependent oxidoreductase N3115_06360 PF05430 S-adenosyl-L-methionine-dependent methyltransferase N3115_06370 PF00072 Response regulator receiver domain N3115_06380 PF00512 His Kinase A (phospho-acceptor) domain N3115_06380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_06385 PF00226 DnaJ domain N3115_06385 PF01556 DnaJ C terminal domain N3115_06390 PF13411 MerR HTH family regulatory protein N3115_06395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3115_06400 PF00005 ABC transporter N3115_06415 PF03741 Integral membrane protein TerC family N3115_06420 PF05525 Branched-chain amino acid transport protein N3115_06440 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain N3115_06440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N3115_06440 PF02142 MGS-like domain N3115_06450 PF06965 Na+/H+ antiporter 1 N3115_06460 PF00561 alpha/beta hydrolase fold N3115_06470 PF00091 Tubulin/FtsZ family, GTPase domain N3115_06470 PF12327 FtsZ family, C-terminal domain N3115_06475 PF02491 SHS2 domain inserted in FTSA N3115_06495 PF03960 ArsC family N3115_06515 PF00005 ABC transporter N3115_06515 PF16326 ABC transporter C-terminal domain N3115_06515 PF12848 ABC transporter N3115_06525 PF14602 Hexapeptide repeat of succinyl-transferase N3115_06525 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle N3115_06530 PF13419 Haloacid dehalogenase-like hydrolase N3115_06540 PF00270 DEAD/DEAH box helicase N3115_06540 PF00271 Helicase conserved C-terminal domain N3115_06540 PF17764 3′ DNA-binding domain (3′BD) N3115_06540 PF18074 Primosomal protein N C-terminal domain N3115_06540 PF18319 PriA DNA helicase Cys-rich region (CRR) domain N3115_06565 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA N3115_06570 PF00586 AIR synthase related protein, N-terminal domain N3115_06570 PF02769 AIR synthase related protein, C-terminal domain N3115_06580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N3115_06580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N3115_06590 PF01924 Hydrogenase formation hypA family N3115_06595 PF01455 HupF/HypC family N3115_06600 PF02492 CobW/HypB/UreG, nucleotide-binding domain N3115_06610 PF00672 HAMP domain N3115_06610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_06610 PF02203 Tar ligand binding domain homologue N3115_06625 PF05661 Protein of unknown function (DUF808) N3115_06640 PF12823 Domain of unknown function (DUF3817) N3115_06650 PF02568 Thiamine biosynthesis protein (ThiI) N3115_06650 PF02926 THUMP domain N3115_06670 PF17788 HypF Kae1-like domain N3115_06670 PF00708 Acylphosphatase N3115_06670 PF01300 Telomere recombination N3115_06670 PF07503 HypF finger N3115_06680 PF01750 Hydrogenase maturation protease N3115_06685 PF01292 Prokaryotic cytochrome b561 N3115_06690 PF00374 Nickel-dependent hydrogenase N3115_06695 PF10518 TAT (twin-arginine translocation) pathway signal sequence N3115_06695 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N3115_06695 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal N3115_06715 PF01750 Hydrogenase maturation protease N3115_06720 PF01292 Prokaryotic cytochrome b561 N3115_06725 PF00374 Nickel-dependent hydrogenase N3115_06730 PF10518 TAT (twin-arginine translocation) pathway signal sequence N3115_06730 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N3115_06730 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal N3115_06740 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal N3115_06740 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N3115_06745 PF00440 Bacterial regulatory proteins, tetR family N3115_06745 PF18665 Tetracyclin repressor-like, C-terminal domain N3115_06750 PF00330 Aconitase family (aconitate hydratase) N3115_06750 PF06434 Aconitate hydratase 2 N-terminus N3115_06750 PF11791 Aconitate B N-terminal domain N3115_06760 PF00360 Phytochrome region N3115_06760 PF00990 Diguanylate cyclase, GGDEF domain N3115_06760 PF01590 GAF domain N3115_06760 PF00563 EAL domain N3115_06765 PF01709 Transcriptional regulator N3115_06770 PF04333 MlaA lipoprotein N3115_06785 PF03641 Possible lysine decarboxylase N3115_06790 PF13419 Haloacid dehalogenase-like hydrolase N3115_06795 PF08534 Redoxin N3115_06805 PF02600 Disulfide bond formation protein DsbB N3115_06825 PF07715 TonB-dependent Receptor Plug Domain N3115_06825 PF00593 TonB dependent receptor N3115_06840 PF00990 Diguanylate cyclase, GGDEF domain N3115_06850 PF02254 TrkA-N domain N3115_06850 PF00999 Sodium/hydrogen exchanger family N3115_06860 PF00464 Serine hydroxymethyltransferase N3115_06865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain N3115_06865 PF02805 Metal binding domain of Ada N3115_06865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N3115_06865 PF12833 Helix-turn-helix domain N3115_06885 PF00202 Aminotransferase class-III N3115_06890 PF03473 MOSC domain N3115_06895 PF04055 Radical SAM superfamily N3115_06900 PF10437 Bacterial lipoate protein ligase C-terminus N3115_06900 PF03099 Biotin/lipoate A/B protein ligase family N3115_06905 PF00456 Transketolase, thiamine diphosphate binding domain N3115_06905 PF17831 Pyruvate dehydrogenase E1 component middle domain N3115_06910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N3115_06910 PF02817 e3 binding domain N3115_06910 PF00364 Biotin-requiring enzyme N3115_06915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N3115_06915 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3115_06920 PF07685 CobB/CobQ-like glutamine amidotransferase domain N3115_06925 PF07660 Secretin and TonB N terminus short domain N3115_06925 PF07715 TonB-dependent Receptor Plug Domain N3115_06925 PF00593 TonB dependent receptor N3115_06930 PF07715 TonB-dependent Receptor Plug Domain N3115_06930 PF00593 TonB dependent receptor N3115_06935 PF07715 TonB-dependent Receptor Plug Domain N3115_06935 PF07660 Secretin and TonB N terminus short domain N3115_06935 PF00593 TonB dependent receptor N3115_06940 PF01263 Aldose 1-epimerase N3115_06945 PF00905 Penicillin binding protein transpeptidase domain N3115_06960 PF02203 Tar ligand binding domain homologue N3115_06960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_06960 PF00672 HAMP domain N3115_06965 PF00075 RNase H N3115_06970 PF00682 HMGL-like N3115_06985 PF11799 impB/mucB/samB family C-terminal domain N3115_06985 PF00817 impB/mucB/samB family N3115_06985 PF11798 IMS family HHH motif N3115_06990 PF03453 MoeA N-terminal region (domain I and II) N3115_06990 PF03454 MoeA C-terminal region (domain IV) N3115_06990 PF00994 Probable molybdopterin binding domain N3115_07000 PF02634 FdhD/NarQ family N3115_07010 PF13247 4Fe-4S dicluster domain N3115_07040 PF00512 His Kinase A (phospho-acceptor) domain N3115_07040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_07065 PF01841 Transglutaminase-like superfamily N3115_07070 PF02769 AIR synthase related protein, C-terminal domain N3115_07070 PF00586 AIR synthase related protein, N-terminal domain N3115_07090 PF00872 Transposase, Mutator family N3115_07100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_07100 PF00512 His Kinase A (phospho-acceptor) domain N3115_07100 PF01627 Hpt domain N3115_07100 PF00072 Response regulator receiver domain N3115_07100 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) N3115_07100 PF00672 HAMP domain N3115_07105 PF00072 Response regulator receiver domain N3115_07110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_07110 PF08447 PAS fold N3115_07115 PF00672 HAMP domain N3115_07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_07115 PF02203 Tar ligand binding domain homologue N3115_07135 PF00072 Response regulator receiver domain N3115_07135 PF00990 Diguanylate cyclase, GGDEF domain N3115_07155 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) N3115_07155 PF12008 Type I restriction and modification enzyme - subunit R C terminal N3115_07155 PF18766 SWI2/SNF2 ATPase N3115_07160 PF01420 Type I restriction modification DNA specificity domain N3115_07165 PF12161 HsdM N-terminal domain N3115_07165 PF02384 N-6 DNA Methylase N3115_07225 PF13356 Arm DNA-binding domain N3115_07225 PF00589 Phage integrase family N3115_07235 PF03841 L-seryl-tRNA selenium transferase N3115_07240 PF03144 Elongation factor Tu domain 2 N3115_07240 PF09107 Elongation factor SelB, winged helix N3115_07240 PF09106 Elongation factor SelB, winged helix N3115_07240 PF09105 Elongation factor SelB, winged helix N3115_07240 PF00009 Elongation factor Tu GTP binding domain N3115_07285 PF08447 PAS fold N3115_07285 PF08448 PAS fold N3115_07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_07290 PF03358 NADPH-dependent FMN reductase N3115_07300 PF01966 HD domain N3115_07305 PF08448 PAS fold N3115_07305 PF00990 Diguanylate cyclase, GGDEF domain N3115_07305 PF00563 EAL domain N3115_07310 PF01243 Pyridoxamine 5'-phosphate oxidase N3115_07310 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region N3115_07315 PF00563 EAL domain N3115_07315 PF00990 Diguanylate cyclase, GGDEF domain N3115_07315 PF03707 Bacterial signalling protein N terminal repeat N3115_07320 PF03880 DbpA RNA binding domain N3115_07320 PF00270 DEAD/DEAH box helicase N3115_07320 PF00271 Helicase conserved C-terminal domain N3115_07345 PF00183 Hsp90 protein N3115_07350 PF00141 Peroxidase N3115_07370 PF04403 Paraquat-inducible protein A N3115_07385 PF00563 EAL domain N3115_07385 PF00990 Diguanylate cyclase, GGDEF domain N3115_07385 PF08448 PAS fold N3115_07405 PF04073 Aminoacyl-tRNA editing domain N3115_07415 PF08713 DNA alkylation repair enzyme N3115_07420 PF03992 Antibiotic biosynthesis monooxygenase N3115_07435 PF01965 DJ-1/PfpI family N3115_07440 PF05175 Methyltransferase small domain N3115_07440 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus N3115_07445 PF00491 Arginase family N3115_07460 PF00682 HMGL-like N3115_07460 PF08502 LeuA allosteric (dimerisation) domain N3115_07465 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term N3115_07465 PF12833 Helix-turn-helix domain N3115_07470 PF00958 GMP synthase C terminal domain N3115_07470 PF00117 Glutamine amidotransferase class-I N3115_07470 PF13673 Acetyltransferase (GNAT) domain N3115_07470 PF13302 Acetyltransferase (GNAT) domain N3115_07470 PF03352 Methyladenine glycosylase N3115_07475 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N3115_07475 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N3115_07480 PF00924 Mechanosensitive ion channel N3115_07485 PF02833 DHHA2 domain N3115_07485 PF01368 DHH family N3115_07500 PF10415 Fumarase C C-terminus N3115_07500 PF00206 Lyase N3115_07505 PF01048 Phosphorylase superfamily N3115_07510 PF00698 Acyl transferase domain N3115_07515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N3115_07530 PF04052 TolB amino-terminal domain N3115_07540 PF02472 Biopolymer transport protein ExbD/TolR N3115_07545 PF01618 MotA/TolQ/ExbB proton channel family N3115_07550 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain N3115_07555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N3115_07555 PF02874 ATP synthase alpha/beta family, beta-barrel domain N3115_07560 PF00231 ATP synthase N3115_07565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N3115_07565 PF02874 ATP synthase alpha/beta family, beta-barrel domain N3115_07565 PF00306 ATP synthase alpha/beta chain, C terminal domain N3115_07570 PF00213 ATP synthase delta (OSCP) subunit N3115_07575 PF00430 ATP synthase B/B' CF(0) N3115_07585 PF17762 HTH domain found in ParB protein N3115_07585 PF02195 ParB-like nuclease domain N3115_07590 PF13614 AAA domain N3115_07605 PF00551 Formyl transferase N3115_07605 PF02911 Formyl transferase, C-terminal domain N3115_07610 PF00696 Amino acid kinase family N3115_07615 PF01018 GTP1/OBG N3115_07615 PF01926 50S ribosome-binding GTPase N3115_07620 PF01016 Ribosomal L27 protein N3115_07625 PF00829 Ribosomal prokaryotic L21 protein N3115_07630 PF16730 DnaG-primase C-terminal, helicase-binding domain N3115_07630 PF13662 Toprim domain N3115_07630 PF08275 DNA primase catalytic core, N-terminal domain N3115_07630 PF01807 CHC2 zinc finger N3115_07640 PF00035 Double-stranded RNA binding motif N3115_07640 PF14622 Ribonuclease-III-like N3115_07645 PF01264 Chorismate synthase N3115_07655 PF01435 Peptidase family M48 N3115_07665 PF00300 Histidine phosphatase superfamily (branch 1) N3115_07675 PF01926 50S ribosome-binding GTPase N3115_07675 PF12631 MnmE helical domain N3115_07675 PF10396 GTP-binding protein TrmE N-terminus N3115_07685 PF02096 60Kd inner membrane protein N3115_07685 PF14849 YidC periplasmic domain N3115_07690 PF01809 Putative membrane protein insertion efficiency factor N3115_07695 PF00825 Ribonuclease P N3115_07700 PF00468 Ribosomal protein L34 N3115_07705 PF02861 Clp amino terminal domain, pathogenicity island component N3115_07705 PF17871 AAA lid domain N3115_07705 PF00004 ATPase family associated with various cellular activities (AAA) N3115_07705 PF07724 AAA domain (Cdc48 subfamily) N3115_07705 PF10431 C-terminal, D2-small domain, of ClpB protein N3115_07710 PF01351 Ribonuclease HII N3115_07720 PF03976 Polyphosphate kinase 2 (PPK2) N3115_07730 PF01625 Peptide methionine sulfoxide reductase N3115_07735 PF01641 SelR domain N3115_07740 PF01557 Fumarylacetoacetate (FAA) hydrolase family N3115_07755 PF04055 Radical SAM superfamily N3115_07755 PF00202 Aminotransferase class-III N3115_07755 PF06968 Biotin and Thiamin Synthesis associated domain N3115_07760 PF08447 PAS fold N3115_07760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_07760 PF08448 PAS fold N3115_07765 PF02142 MGS-like domain N3115_07765 PF01808 AICARFT/IMPCHase bienzyme N3115_07770 PF00586 AIR synthase related protein, N-terminal domain N3115_07770 PF02769 AIR synthase related protein, C-terminal domain N3115_07770 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain N3115_07780 PF01551 Peptidase family M23 N3115_07780 PF01476 LysM domain N3115_07780 PF08525 Opacity-associated protein A N-terminal motif N3115_07785 PF01227 GTP cyclohydrolase I N3115_07790 PF01544 CorA-like Mg2+ transporter protein N3115_07795 PF00482 Type II secretion system (T2SS), protein F N3115_07800 PF00437 Type II/IV secretion system protein N3115_07815 PF07650 KH domain N3115_07815 PF01926 50S ribosome-binding GTPase N3115_07820 PF01078 Magnesium chelatase, subunit ChlI N3115_07820 PF13335 Magnesium chelatase, subunit ChlI C-terminal N3115_07825 PF00672 HAMP domain N3115_07825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_07825 PF02203 Tar ligand binding domain homologue N3115_07840 PF01327 Polypeptide deformylase N3115_07845 PF00574 Clp protease N3115_07850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N3115_07850 PF05698 Bacterial trigger factor protein (TF) C-terminus N3115_07850 PF05697 Bacterial trigger factor protein (TF) N3115_07855 PF03976 Polyphosphate kinase 2 (PPK2) N3115_07860 PF03976 Polyphosphate kinase 2 (PPK2) N3115_07865 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N3115_07870 PF03435 Saccharopine dehydrogenase NADP binding domain N3115_07870 PF16653 Saccharopine dehydrogenase C-terminal domain N3115_07895 PF01053 Cys/Met metabolism PLP-dependent enzyme N3115_07900 PF01053 Cys/Met metabolism PLP-dependent enzyme N3115_07905 PF00072 Response regulator receiver domain N3115_07905 PF00486 Transcriptional regulatory protein, C terminal N3115_07910 PF00672 HAMP domain N3115_07910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_07910 PF02203 Tar ligand binding domain homologue N3115_07915 PF00672 HAMP domain N3115_07915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_07915 PF18698 Histidine kinase sensor domain N3115_07915 PF00512 His Kinase A (phospho-acceptor) domain N3115_07945 PF00072 Response regulator receiver domain N3115_07945 PF00486 Transcriptional regulatory protein, C terminal N3115_07955 PF03824 High-affinity nickel-transport protein N3115_07970 PF06965 Na+/H+ antiporter 1 N3115_07975 PF03150 Di-haem cytochrome c peroxidase N3115_07980 PF04116 Fatty acid hydroxylase superfamily N3115_08005 PF00137 ATP synthase subunit C N3115_08030 PF08543 Phosphomethylpyrimidine kinase N3115_08035 PF00171 Aldehyde dehydrogenase family N3115_08050 PF13746 4Fe-4S dicluster domain N3115_08050 PF12801 4Fe-4S binding domain N3115_08050 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase N3115_08055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_08055 PF00512 His Kinase A (phospho-acceptor) domain N3115_08060 PF00072 Response regulator receiver domain N3115_08060 PF12833 Helix-turn-helix domain N3115_08070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N3115_08070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N3115_08070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N3115_08070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N3115_08075 PF00795 Carbon-nitrogen hydrolase N3115_08095 PF00258 Flavodoxin N3115_08100 PF01475 Ferric uptake regulator family N3115_08110 PF04376 Arginine-tRNA-protein transferase, N terminus N3115_08110 PF04377 Arginine-tRNA-protein transferase, C terminus N3115_08115 PF00290 Tryptophan synthase alpha chain N3115_08120 PF02548 Ketopantoate hydroxymethyltransferase N3115_08125 PF05496 Holliday junction DNA helicase RuvB P-loop domain N3115_08125 PF05491 RuvB C-terminal winged helix domain N3115_08125 PF17864 RuvB AAA lid domain N3115_08130 PF01594 AI-2E family transporter N3115_08170 PF04055 Radical SAM superfamily N3115_08175 PF01208 Uroporphyrinogen decarboxylase (URO-D) N3115_08185 PF02774 Semialdehyde dehydrogenase, dimerisation domain N3115_08185 PF01118 Semialdehyde dehydrogenase, NAD binding domain N3115_08190 PF00521 DNA gyrase/topoisomerase IV, subunit A N3115_08190 PF03989 DNA gyrase C-terminal domain, beta-propeller N3115_08200 PF01960 ArgJ family N3115_08210 PF00830 Ribosomal L28 family N3115_08220 PF08645 Polynucleotide kinase 3 phosphatase N3115_08225 PF01370 NAD dependent epimerase/dehydratase family N3115_08230 PF01467 Cytidylyltransferase-like N3115_08230 PF00294 pfkB family carbohydrate kinase N3115_08235 PF13580 SIS domain N3115_08240 PF00884 Sulfatase N3115_08245 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N3115_08255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N3115_08260 PF00535 Glycosyl transferase family 2 N3115_08275 PF00534 Glycosyl transferases group 1 N3115_08275 PF13439 Glycosyltransferase Family 4 N3115_08295 PF03062 MBOAT, membrane-bound O-acyltransferase family N3115_08305 PF03062 MBOAT, membrane-bound O-acyltransferase family N3115_08315 PF03062 MBOAT, membrane-bound O-acyltransferase family N3115_08335 PF16363 GDP-mannose 4,6 dehydratase N3115_08340 PF04321 RmlD substrate binding domain N3115_08345 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase N3115_08350 PF00483 Nucleotidyl transferase N3115_08370 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N3115_08380 PF00037 4Fe-4S binding domain N3115_08390 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3115_08390 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster N3115_08395 PF00310 Glutamine amidotransferases class-II N3115_08395 PF04898 Glutamate synthase central domain N3115_08395 PF01645 Conserved region in glutamate synthase N3115_08395 PF01493 GXGXG motif N3115_08415 PF00263 Bacterial type II and III secretion system protein N3115_08415 PF03958 Bacterial type II/III secretion system short domain N3115_08420 PF09186 Domain of unknown function (DUF1949) N3115_08420 PF01205 Uncharacterized protein family UPF0029 N3115_08425 PF01728 FtsJ-like methyltransferase N3115_08425 PF01479 S4 domain N3115_08430 PF06574 FAD synthetase N3115_08430 PF01687 Riboflavin kinase N3115_08435 PF13649 Methyltransferase domain N3115_08440 PF00578 AhpC/TSA family N3115_08450 PF01565 FAD binding domain N3115_08450 PF02913 FAD linked oxidases, C-terminal domain N3115_08455 PF03631 Virulence factor BrkB N3115_08465 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N3115_08475 PF00793 DAHP synthetase I family N3115_08480 PF00885 6,7-dimethyl-8-ribityllumazine synthase N3115_08485 PF01029 NusB family N3115_08490 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family N3115_08510 PF00005 ABC transporter N3115_08520 PF04023 FeoA domain N3115_08525 PF04023 FeoA domain N3115_08525 PF07664 Ferrous iron transport protein B C terminus N3115_08525 PF17910 FeoB cytosolic helical domain N3115_08525 PF02421 Ferrous iron transport protein B N3115_08525 PF07670 Nucleoside recognition N3115_08550 PF00403 Heavy-metal-associated domain N3115_08555 PF01022 Bacterial regulatory protein, arsR family N3115_08560 PF00593 TonB dependent receptor N3115_08560 PF07715 TonB-dependent Receptor Plug Domain N3115_08570 PF00873 AcrB/AcrD/AcrF family N3115_08585 PF00313 'Cold-shock' DNA-binding domain N3115_08595 PF00072 Response regulator receiver domain N3115_08595 PF12833 Helix-turn-helix domain N3115_08600 PF00989 PAS fold N3115_08600 PF00512 His Kinase A (phospho-acceptor) domain N3115_08600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_08635 PF10417 C-terminal domain of 1-Cys peroxiredoxin N3115_08635 PF00578 AhpC/TSA family N3115_08640 PF00085 Thioredoxin N3115_08655 PF00623 RNA polymerase Rpb1, domain 2 N3115_08655 PF04997 RNA polymerase Rpb1, domain 1 N3115_08655 PF04983 RNA polymerase Rpb1, domain 3 N3115_08655 PF05000 RNA polymerase Rpb1, domain 4 N3115_08655 PF04998 RNA polymerase Rpb1, domain 5 N3115_08660 PF04561 RNA polymerase Rpb2, domain 2 N3115_08660 PF04565 RNA polymerase Rpb2, domain 3 N3115_08660 PF10385 RNA polymerase beta subunit external 1 domain N3115_08660 PF00562 RNA polymerase Rpb2, domain 6 N3115_08660 PF04560 RNA polymerase Rpb2, domain 7 N3115_08660 PF04563 RNA polymerase beta subunit N3115_08665 PF16320 Ribosomal protein L7/L12 dimerisation domain N3115_08665 PF00542 Ribosomal protein L7/L12 C-terminal domain N3115_08670 PF00466 Ribosomal protein L10 N3115_08675 PF00687 Ribosomal protein L1p/L10e family N3115_08680 PF00298 Ribosomal protein L11, RNA binding domain N3115_08680 PF03946 Ribosomal protein L11, N-terminal domain N3115_08685 PF02357 Transcription termination factor nusG N3115_08700 PF00471 Ribosomal protein L33 N3115_08705 PF03144 Elongation factor Tu domain 2 N3115_08705 PF03143 Elongation factor Tu C-terminal domain N3115_08705 PF00009 Elongation factor Tu GTP binding domain N3115_08730 PF08245 Mur ligase middle domain N3115_08735 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 N3115_08735 PF00953 Glycosyl transferase family 4 N3115_08740 PF01676 Metalloenzyme superfamily N3115_08740 PF06415 BPG-independent PGAM N-terminus (iPGM_N) N3115_08745 PF00005 ABC transporter N3115_08745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N3115_08750 PF00912 Transglycosylase N3115_08750 PF00905 Penicillin binding protein transpeptidase domain N3115_08755 PF00120 Glutamine synthetase, catalytic domain N3115_08755 PF03951 Glutamine synthetase, beta-Grasp domain N3115_08765 PF02391 MoaE protein N3115_08775 PF02621 Menaquinone biosynthesis N3115_08780 PF02673 Bacitracin resistance protein BacA N3115_08785 PF04101 Glycosyltransferase family 28 C-terminal domain N3115_08785 PF03033 Glycosyltransferase family 28 N-terminal domain N3115_08790 PF01098 Cell cycle protein N3115_08795 PF03717 Penicillin-binding Protein dimerisation domain N3115_08795 PF00905 Penicillin binding protein transpeptidase domain N3115_08800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N3115_08840 PF00004 ATPase family associated with various cellular activities (AAA) N3115_08840 PF07724 AAA domain (Cdc48 subfamily) N3115_08840 PF17871 AAA lid domain N3115_08840 PF02861 Clp amino terminal domain, pathogenicity island component N3115_08840 PF10431 C-terminal, D2-small domain, of ClpB protein N3115_08845 PF02617 ATP-dependent Clp protease adaptor protein ClpS N3115_08860 PF00501 AMP-binding enzyme N3115_08860 PF13193 AMP-binding enzyme C-terminal domain N3115_08865 PF01575 MaoC like domain N3115_08885 PF00672 HAMP domain N3115_08885 PF02203 Tar ligand binding domain homologue N3115_08885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_08890 PF02040 Arsenical pump membrane protein N3115_08910 PF02417 Chromate transporter N3115_08915 PF01451 Low molecular weight phosphotyrosine protein phosphatase N3115_08920 PF01613 Flavin reductase like domain N3115_08930 PF00771 FHIPEP family N3115_08935 PF00700 Bacterial flagellin C-terminal helical region N3115_08935 PF00669 Bacterial flagellin N-terminal helical region N3115_08940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N3115_08940 PF18269 T3SS EscN ATPase C-terminal domain N3115_08950 PF01312 FlhB HrpN YscU SpaS Family N3115_08965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3115_08965 PF00460 Flagella basal body rod protein N3115_08970 PF02049 Flagellar hook-basal body complex protein FliE N3115_08980 PF10609 NUBPL iron-transfer P-loop NTPase N3115_08985 PF00448 SRP54-type protein, GTPase domain N3115_09005 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N3115_09025 PF07196 Flagellin hook IN motif N3115_09025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3115_09025 PF07559 Flagellar basal body protein FlaE N3115_09025 PF00460 Flagella basal body rod protein N3115_09030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3115_09030 PF00460 Flagella basal body rod protein N3115_09040 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N3115_09050 PF01706 FliG C-terminal domain N3115_09050 PF14842 FliG N-terminal domain N3115_09050 PF14841 FliG middle domain N3115_09055 PF01514 Secretory protein of YscJ/FliF family N3115_09055 PF08345 Flagellar M-ring protein C-terminal N3115_09060 PF00460 Flagella basal body rod protein N3115_09065 PF00460 Flagella basal body rod protein N3115_09065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3115_09075 PF00072 Response regulator receiver domain N3115_09080 PF00460 Flagella basal body rod protein N3115_09080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N3115_09095 PF01782 RimM N-terminal domain N3115_09105 PF00886 Ribosomal protein S16 N3115_09110 PF02881 SRP54-type protein, helical bundle domain N3115_09110 PF02978 Signal peptide binding domain N3115_09110 PF00448 SRP54-type protein, GTPase domain N3115_09115 PF00849 RNA pseudouridylate synthase N3115_09120 PF00534 Glycosyl transferases group 1 N3115_09120 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) N3115_09130 PF01784 NIF3 (NGG1p interacting factor 3) N3115_09135 PF02091 Glycyl-tRNA synthetase alpha subunit N3115_09145 PF00731 AIR carboxylase N3115_09155 PF01136 Peptidase family U32 N3115_09160 PF00672 HAMP domain N3115_09160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_09160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_09160 PF17200 Single Cache domain 2 N3115_09160 PF17200 Single Cache domain 2 N3115_09160 PF00672 HAMP domain N3115_09165 PF13476 AAA domain N3115_09170 PF01513 ATP-NAD kinase N3115_09175 PF00679 Elongation factor G C-terminus N3115_09175 PF14492 Elongation Factor G, domain II N3115_09175 PF03764 Elongation factor G, domain IV N3115_09175 PF00009 Elongation factor Tu GTP binding domain N3115_09175 PF03144 Elongation factor Tu domain 2 N3115_09180 PF00177 Ribosomal protein S7p/S5e N3115_09185 PF00164 Ribosomal protein S12/S23 N3115_09195 PF07690 Major Facilitator Superfamily N3115_09200 PF07715 TonB-dependent Receptor Plug Domain N3115_09200 PF00593 TonB dependent receptor N3115_09215 PF00005 ABC transporter N3115_09220 PF00528 Binding-protein-dependent transport system inner membrane component N3115_09260 PF00117 Glutamine amidotransferase class-I N3115_09270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_09270 PF08447 PAS fold N3115_09290 PF13416 Bacterial extracellular solute-binding protein N3115_09295 PF00528 Binding-protein-dependent transport system inner membrane component N3115_09300 PF00005 ABC transporter N3115_09300 PF08402 TOBE domain N3115_09310 PF07715 TonB-dependent Receptor Plug Domain N3115_09310 PF00593 TonB dependent receptor N3115_09330 PF01077 Nitrite and sulphite reductase 4Fe-4S domain N3115_09330 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain N3115_09350 PF16921 Tex protein YqgF-like domain N3115_09350 PF00575 S1 RNA binding domain N3115_09350 PF09371 Tex-like protein N-terminal domain N3115_09350 PF17674 HHH domain N3115_09360 PF01042 Endoribonuclease L-PSP N3115_09375 PF00155 Aminotransferase class I and II N3115_09385 PF09335 SNARE associated Golgi protein N3115_09390 PF01245 Ribosomal protein L19 N3115_09395 PF01746 tRNA (Guanine-1)-methyltransferase N3115_09405 PF01717 Cobalamin-independent synthase, Catalytic domain N3115_09405 PF08267 Cobalamin-independent synthase, N-terminal domain N3115_09410 PF13291 ACT domain N3115_09410 PF00291 Pyridoxal-phosphate dependent enzyme N3115_09415 PF00119 ATP synthase A chain N3115_09425 PF05538 Campylobacter major outer membrane protein N3115_09435 PF02660 Glycerol-3-phosphate acyltransferase N3115_09440 PF02445 Quinolinate synthetase A protein N3115_09445 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain N3115_09445 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain N3115_09460 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase N3115_09470 PF08544 GHMP kinases C terminal N3115_09470 PF00288 GHMP kinases N terminal domain N3115_09480 PF00009 Elongation factor Tu GTP binding domain N3115_09480 PF11987 Translation-initiation factor 2 N3115_09480 PF04760 Translation initiation factor IF-2, N-terminal region N3115_09485 PF02033 Ribosome-binding factor A N3115_09490 PF02576 RimP N-terminal domain N3115_09495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N3115_09495 PF01872 RibD C-terminal domain N3115_09500 PF01132 Elongation factor P (EF-P) OB domain N3115_09500 PF08207 Elongation factor P (EF-P) KOW-like domain N3115_09500 PF09285 Elongation factor P, C-terminal N3115_09505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N3115_09505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N3115_09505 PF01842 ACT domain N3115_09510 PF00575 S1 RNA binding domain N3115_09515 PF02401 LytB protein N3115_09520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N3115_09525 PF03147 Ferredoxin-fold anticodon binding domain N3115_09525 PF03484 tRNA synthetase B5 domain N3115_09525 PF01588 Putative tRNA binding domain N3115_09525 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain N3115_09530 PF01409 tRNA synthetases class II core domain (F) N3115_09530 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain N3115_09535 PF01230 HIT domain N3115_09540 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit N3115_09545 PF00109 Beta-ketoacyl synthase, N-terminal domain N3115_09545 PF02801 Beta-ketoacyl synthase, C-terminal domain N3115_09550 PF00550 Phosphopantetheine attachment site N3115_09560 PF04055 Radical SAM superfamily N3115_09570 PF06508 Queuosine biosynthesis protein QueC N3115_09580 PF04452 RNA methyltransferase N3115_09590 PF00032 Cytochrome b(C-terminal)/b6/petD N3115_09590 PF00033 Cytochrome b/b6/petB N3115_09595 PF00355 Rieske [2Fe-2S] domain N3115_09600 PF00291 Pyridoxal-phosphate dependent enzyme N3115_09605 PF00696 Amino acid kinase family N3115_09610 PF00580 UvrD/REP helicase N-terminal domain N3115_09610 PF13361 UvrD-like helicase C-terminal domain N3115_09620 PF03462 PCRF domain N3115_09620 PF00472 RF-1 domain N3115_09630 PF00872 Transposase, Mutator family N3115_09635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N3115_09660 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP N3115_09660 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N3115_09675 PF00115 Cytochrome C and Quinol oxidase polypeptide I N3115_09680 PF01668 SmpB protein N3115_09685 PF00288 GHMP kinases N terminal domain N3115_09690 PF01509 TruB family pseudouridylate synthase (N terminal domain) N3115_09695 PF00580 UvrD/REP helicase N-terminal domain N3115_09695 PF13361 UvrD-like helicase C-terminal domain N3115_09700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N3115_09700 PF03466 LysR substrate binding domain N3115_09705 PF04055 Radical SAM superfamily N3115_09705 PF16199 Radical_SAM C-terminal domain N3115_09710 PF13537 Glutamine amidotransferase domain N3115_09710 PF00156 Phosphoribosyl transferase domain N3115_09715 PF01113 Dihydrodipicolinate reductase, N-terminus N3115_09715 PF05173 Dihydrodipicolinate reductase, C-terminus N3115_09720 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3115_09725 PF00085 Thioredoxin N3115_09730 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N3115_09730 PF02272 DHHA1 domain N3115_09730 PF01411 tRNA synthetases class II (A) N3115_09760 PF00072 Response regulator receiver domain N3115_09760 PF00486 Transcriptional regulatory protein, C terminal N3115_09765 PF13180 PDZ domain N3115_09765 PF17820 PDZ domain N3115_09770 PF00920 Dehydratase family N3115_09800 PF09383 NIL domain N3115_09800 PF00005 ABC transporter N3115_09815 PF01142 tRNA pseudouridine synthase D (TruD) N3115_09820 PF15437 Plasminogen-binding protein pgbA C-terminal N3115_09830 PF13180 PDZ domain N3115_09830 PF03572 Peptidase family S41 N3115_09835 PF01259 SAICAR synthetase N3115_09840 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase N3115_09855 PF01553 Acyltransferase N3115_09860 PF02537 CrcB-like protein, Camphor Resistance (CrcB) N3115_09865 PF02416 mttA/Hcf106 family N3115_09870 PF02416 mttA/Hcf106 family N3115_09875 PF03485 Arginyl tRNA synthetase N terminal domain N3115_09875 PF05746 DALR anticodon binding domain N3115_09875 PF00750 tRNA synthetases class I (R) N3115_09885 PF01467 Cytidylyltransferase-like N3115_09890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N3115_09890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N3115_09895 PF00162 Phosphoglycerate kinase N3115_09900 PF00121 Triosephosphate isomerase N3115_09910 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N3115_09910 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N3115_09915 PF01842 ACT domain N3115_09915 PF01817 Chorismate mutase type II N3115_09915 PF00800 Prephenate dehydratase N3115_09920 PF00155 Aminotransferase class I and II N3115_09925 PF13292 1-deoxy-D-xylulose-5-phosphate synthase N3115_09925 PF02779 Transketolase, pyrimidine binding domain N3115_09925 PF02780 Transketolase, C-terminal domain N3115_09930 PF03150 Di-haem cytochrome c peroxidase N3115_09930 PF00034 Cytochrome c N3115_09935 PF02545 Maf-like protein N3115_09950 PF00877 NlpC/P60 family N3115_09965 PF03167 Uracil DNA glycosylase superfamily N3115_09970 PF00171 Aldehyde dehydrogenase family N3115_09975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N3115_09975 PF00205 Thiamine pyrophosphate enzyme, central domain N3115_09975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N3115_09980 PF04011 LemA family N3115_09995 PF13419 Haloacid dehalogenase-like hydrolase N3115_10000 PF00210 Ferritin-like domain N3115_10005 PF07690 Major Facilitator Superfamily N3115_10015 PF00072 Response regulator receiver domain N3115_10015 PF00990 Diguanylate cyclase, GGDEF domain N3115_10020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3115_10020 PF00529 HlyD membrane-fusion protein of T1SS N3115_10025 PF00873 AcrB/AcrD/AcrF family N3115_10030 PF02321 Outer membrane efflux protein N3115_10035 PF07715 TonB-dependent Receptor Plug Domain N3115_10035 PF00593 TonB dependent receptor N3115_10045 PF04542 Sigma-70 region 2 N3115_10045 PF08281 Sigma-70, region 4 N3115_10065 PF01053 Cys/Met metabolism PLP-dependent enzyme N3115_10070 PF02082 Transcriptional regulator N3115_10075 PF00291 Pyridoxal-phosphate dependent enzyme N3115_10085 PF01507 Phosphoadenosine phosphosulfate reductase family N3115_10090 PF01507 Phosphoadenosine phosphosulfate reductase family N3115_10095 PF00009 Elongation factor Tu GTP binding domain N3115_10100 PF01077 Nitrite and sulphite reductase 4Fe-4S domain N3115_10100 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain N3115_10110 PF02347 Glycine cleavage system P-protein N3115_10145 PF02277 Phosphoribosyltransferase N3115_10150 PF00939 Sodium:sulfate symporter transmembrane region N3115_10160 PF00085 Thioredoxin N3115_10160 PF02683 Cytochrome C biogenesis protein transmembrane region N3115_10160 PF11412 Disulphide bond corrector protein DsbC N3115_10165 PF18030 RimK PreATP-grasp domain N3115_10165 PF08443 RimK-like ATP-grasp domain N3115_10180 PF00990 Diguanylate cyclase, GGDEF domain N3115_10180 PF10442 FIST C domain N3115_10180 PF08495 FIST N domain N3115_10180 PF00563 EAL domain N3115_10185 PF02666 Phosphatidylserine decarboxylase N3115_10195 PF06725 3D domain N3115_10195 PF03562 MltA specific insert domain N3115_10200 PF00012 Hsp70 protein N3115_10205 PF01025 GrpE N3115_10210 PF01628 HrcA protein C terminal domain N3115_10220 PF01416 tRNA pseudouridine synthase N3115_10235 PF01255 Putative undecaprenyl diphosphate synthase N3115_10240 PF04127 DNA / pantothenate metabolism flavoprotein N3115_10240 PF02441 Flavoprotein N3115_10245 PF14602 Hexapeptide repeat of succinyl-transferase N3115_10245 PF12804 MobA-like NTP transferase domain N3115_10255 PF00270 DEAD/DEAH box helicase N3115_10255 PF08148 DSHCT (NUC185) domain N3115_10255 PF00271 Helicase conserved C-terminal domain N3115_10260 PF05958 tRNA (Uracil-5-)-methyltransferase N3115_10265 PF00293 NUDIX domain N3115_10280 PF00665 Integrase core domain N3115_10295 PF01695 IstB-like ATP binding protein N3115_10300 PF00665 Integrase core domain N3115_10340 PF01134 Glucose inhibited division protein A N3115_10340 PF13932 GidA associated domain N3115_10345 PF00677 Lumazine binding domain N3115_10360 PF10431 C-terminal, D2-small domain, of ClpB protein N3115_10360 PF06689 ClpX C4-type zinc finger N3115_10360 PF07724 AAA domain (Cdc48 subfamily) N3115_10365 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 N3115_10365 PF00132 Bacterial transferase hexapeptide (six repeats) N3115_10370 PF07977 FabA-like domain N3115_10375 PF02684 Lipid-A-disaccharide synthetase N3115_10380 PF02677 Epoxyqueuosine reductase QueH N3115_10390 PF07992 Pyridine nucleotide-disulphide oxidoreductase N3115_10395 PF01261 Xylose isomerase-like TIM barrel N3115_10400 PF02321 Outer membrane efflux protein N3115_10405 PF00873 AcrB/AcrD/AcrF family N3115_10410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N3115_10410 PF00529 HlyD membrane-fusion protein of T1SS N3115_10420 PF07690 Major Facilitator Superfamily N3115_10425 PF00916 Sulfate permease family N3115_10425 PF01740 STAS domain N3115_10445 PF17758 Proteasomal ATPase OB N-terminal domain N3115_10445 PF00004 ATPase family associated with various cellular activities (AAA) N3115_10445 PF16450 Proteasomal ATPase OB C-terminal domain N3115_10455 PF02621 Menaquinone biosynthesis N3115_10460 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain N3115_10465 PF01131 DNA topoisomerase N3115_10465 PF01751 Toprim domain N3115_10465 PF13368 Topoisomerase C-terminal repeat N3115_10475 PF06968 Biotin and Thiamin Synthesis associated domain N3115_10475 PF04055 Radical SAM superfamily N3115_10490 PF00113 Enolase, C-terminal TIM barrel domain N3115_10490 PF03952 Enolase, N-terminal domain N3115_10495 PF00154 recA bacterial DNA recombination protein N3115_10505 PF02719 Polysaccharide biosynthesis protein N3115_10510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N3115_10515 PF02348 Cytidylyltransferase N3115_10520 PF03102 NeuB family N3115_10520 PF08666 SAF domain N3115_10540 PF02222 ATP-grasp domain N3115_10560 PF00700 Bacterial flagellin C-terminal helical region N3115_10560 PF07196 Flagellin hook IN motif N3115_10560 PF00669 Bacterial flagellin N-terminal helical region N3115_10565 PF00669 Bacterial flagellin N-terminal helical region N3115_10565 PF00700 Bacterial flagellin C-terminal helical region N3115_10565 PF07196 Flagellin hook IN motif N3115_10570 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase N3115_10570 PF12801 4Fe-4S binding domain N3115_10570 PF13746 4Fe-4S dicluster domain N3115_10575 PF00117 Glutamine amidotransferase class-I N3115_10575 PF06418 CTP synthase N-terminus N3115_10580 PF01368 DHH family N3115_10580 PF17768 RecJ OB domain N3115_10580 PF02272 DHHA1 domain N3115_10600 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N3115_10600 PF14579 Helix-hairpin-helix motif N3115_10600 PF02811 PHP domain N3115_10600 PF07733 Bacterial DNA polymerase III alpha NTPase domain N3115_10605 PF01975 Survival protein SurE N3115_10620 PF01967 MoaC family N3115_10625 PF01165 Ribosomal protein S21 N3115_10655 PF01027 Inhibitor of apoptosis-promoting Bax1 N3115_10660 PF17792 ThiD2 family N3115_10660 PF02581 Thiamine monophosphate synthase N3115_10670 PF03840 Preprotein translocase SecG subunit N3115_10675 PF01765 Ribosome recycling factor N3115_10680 PF00156 Phosphoribosyl transferase domain N3115_10695 PF01544 CorA-like Mg2+ transporter protein N3115_10700 PF03883 Peroxide stress protein YaaA N3115_10715 PF00149 Calcineurin-like phosphoesterase N3115_10720 PF00011 Hsp20/alpha crystallin family N3115_10725 PF01814 Hemerythrin HHE cation binding domain N3115_10730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_10730 PF00672 HAMP domain N3115_10730 PF02203 Tar ligand binding domain homologue N3115_10735 PF00581 Rhodanese-like domain N3115_10735 PF00899 ThiF family N3115_10740 PF12857 TOBE-like domain N3115_10740 PF00005 ABC transporter N3115_10740 PF17850 CysA C-terminal regulatory domain N3115_10745 PF00528 Binding-protein-dependent transport system inner membrane component N3115_10750 PF00528 Binding-protein-dependent transport system inner membrane component N3115_10755 PF00291 Pyridoxal-phosphate dependent enzyme N3115_10760 PF00563 EAL domain N3115_10760 PF10442 FIST C domain N3115_10760 PF00990 Diguanylate cyclase, GGDEF domain N3115_10760 PF08495 FIST N domain N3115_10765 PF02597 ThiS family N3115_10780 PF00679 Elongation factor G C-terminus N3115_10780 PF00009 Elongation factor Tu GTP binding domain N3115_10780 PF03144 Elongation factor Tu domain 2 N3115_10785 PF04143 Sulphur transport N3115_10790 PF01206 Sulfurtransferase TusA N3115_10810 PF00593 TonB dependent receptor N3115_10810 PF07660 Secretin and TonB N terminus short domain N3115_10810 PF07715 TonB-dependent Receptor Plug Domain N3115_10825 PF08448 PAS fold N3115_10825 PF00990 Diguanylate cyclase, GGDEF domain N3115_10830 PF00884 Sulfatase N3115_10830 PF08019 Phosphoethanolamine transferase EptA/EptB N3115_10840 PF01219 Prokaryotic diacylglycerol kinase N3115_10870 PF00486 Transcriptional regulatory protein, C terminal N3115_10870 PF00072 Response regulator receiver domain N3115_10880 PF08241 Methyltransferase domain N3115_10890 PF11849 Domain of unknown function (DUF3369) N3115_10895 PF02511 Thymidylate synthase complementing protein N3115_10910 PF00551 Formyl transferase N3115_10910 PF02911 Formyl transferase, C-terminal domain N3115_10915 PF02075 Crossover junction endodeoxyribonuclease RuvC N3115_10920 PF13614 AAA domain N3115_10925 PF02195 ParB-like nuclease domain N3115_10925 PF17762 HTH domain found in ParB protein N3115_10945 PF00665 Integrase core domain N3115_10950 PF01695 IstB-like ATP binding protein N3115_10955 PF00239 Resolvase, N terminal domain N3115_10955 PF02796 Helix-turn-helix domain of resolvase N3115_10995 PF00308 Bacterial dnaA protein N3115_10995 PF08299 Bacterial dnaA protein helix-turn-helix N3115_10995 PF11638 DnaA N-terminal domain N3115_11020 PF00768 D-alanyl-D-alanine carboxypeptidase N3115_11020 PF07943 Penicillin-binding protein 5, C-terminal domain N3115_11025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N3115_11025 PF08447 PAS fold N3115_11025 PF08448 PAS fold N3115_11035 PF02203 Tar ligand binding domain homologue N3115_11035 PF00672 HAMP domain N3115_11035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N3115_11040 PF01979 Amidohydrolase family N3115_11045 PF01909 Nucleotidyltransferase domain N3115_11045 PF13427 Domain of unknown function (DUF4111) N3115_11050 PF01979 Amidohydrolase family N3115_11075 PF00486 Transcriptional regulatory protein, C terminal N3115_11075 PF00072 Response regulator receiver domain N3115_11080 PF08668 HDOD domain N3115_11085 PF01526 Tn3 transposase DDE domain N3115_11085 PF13700 Domain of unknown function (DUF4158) N3115_11090 PF00239 Resolvase, N terminal domain N3115_11090 PF02796 Helix-turn-helix domain of resolvase N3115_11105 PF01883 Iron-sulfur cluster assembly protein N3115_11120 PF00665 Integrase core domain N3115_11125 PF01695 IstB-like ATP binding protein N3115_11145 PF00183 Hsp90 protein N3115_11160 PF00722 Glycosyl hydrolases family 16 N3115_11220 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) N3115_11225 PF00398 Ribosomal RNA adenine dimethylase N3115_11245 PF08241 Methyltransferase domain N3115_11250 PF04439 Streptomycin adenylyltransferase N3115_11255 PF00583 Acetyltransferase (GNAT) family N3115_11260 PF01636 Phosphotransferase enzyme family N3115_11265 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) N3115_11270 PF00398 Ribosomal RNA adenine dimethylase N3115_11280 PF03764 Elongation factor G, domain IV N3115_11280 PF00679 Elongation factor G C-terminus N3115_11280 PF14492 Elongation Factor G, domain II N3115_11280 PF00009 Elongation factor Tu GTP binding domain