locus-tag class description Abu_0001 PF00308 Bacterial dnaA protein Abu_0001 PF08299 Bacterial dnaA protein helix-turn-helix Abu_0001 PF11638 DnaA N-terminal domain Abu_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Abu_0002 PF02767 DNA polymerase III beta subunit, central domain Abu_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Abu_0003 PF00204 DNA gyrase B Abu_0003 PF00986 DNA gyrase B subunit, carboxyl terminus Abu_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0003 PF01751 Toprim domain Abu_0004 PF07992 Pyridine nucleotide-disulphide oxidoreductase Abu_0005 PF14489 QueF-like protein Abu_0007 PF09335 SNARE associated Golgi protein Abu_0008 PF13649 Methyltransferase domain Abu_0009 PF08402 TOBE domain Abu_0009 PF00005 ABC transporter Abu_0010 PF00528 Binding-protein-dependent transport system inner membrane component Abu_0013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Abu_0013 PF03459 TOBE domain Abu_0015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Abu_0015 PF03466 LysR substrate binding domain Abu_0018 PF00849 RNA pseudouridylate synthase Abu_0019 PF10397 Adenylosuccinate lyase C-terminus Abu_0019 PF00206 Lyase Abu_0020 PF03477 ATP cone domain Abu_0020 PF02867 Ribonucleotide reductase, barrel domain Abu_0020 PF00317 Ribonucleotide reductase, all-alpha domain Abu_0021 PF00268 Ribonucleotide reductase, small chain Abu_0025 PF18393 MotY N-terminal domain Abu_0025 PF00691 OmpA family Abu_0027 PF00107 Zinc-binding dehydrogenase Abu_0027 PF08240 Alcohol dehydrogenase GroES-like domain Abu_0028 PF01638 HxlR-like helix-turn-helix Abu_0029 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Abu_0029 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Abu_0030 PF02934 GatB/GatE catalytic domain Abu_0030 PF02637 GatB domain Abu_0033 PF02652 L-lactate permease Abu_0034 PF00072 Response regulator receiver domain Abu_0034 PF00486 Transcriptional regulatory protein, C terminal Abu_0035 PF00989 PAS fold Abu_0035 PF00512 His Kinase A (phospho-acceptor) domain Abu_0035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0036 PF02589 LUD domain Abu_0037 PF02589 LUD domain Abu_0037 PF13183 4Fe-4S dicluster domain Abu_0037 PF11870 Domain of unknown function (DUF3390) Abu_0038 PF02754 Cysteine-rich domain Abu_0039 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Abu_0040 PF00364 Biotin-requiring enzyme Abu_0041 PF02785 Biotin carboxylase C-terminal domain Abu_0041 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Abu_0041 PF00289 Biotin carboxylase, N-terminal domain Abu_0042 PF00270 DEAD/DEAH box helicase Abu_0042 PF00271 Helicase conserved C-terminal domain Abu_0043 PF01384 Phosphate transporter family Abu_0045 PF13537 Glutamine amidotransferase domain Abu_0045 PF00733 Asparagine synthase Abu_0047 PF02562 PhoH-like protein Abu_0047 PF13638 PIN domain Abu_0048 PF03653 Uncharacterised protein family (UPF0093) Abu_0049 PF16193 AAA C-terminal domain Abu_0049 PF12002 MgsA AAA+ ATPase C terminal Abu_0049 PF05496 Holliday junction DNA helicase RuvB P-loop domain Abu_0049 PF01661 Macro domain Abu_0050 PF01479 S4 domain Abu_0050 PF00849 RNA pseudouridylate synthase Abu_0051 PF00571 CBS domain Abu_0051 PF01380 SIS domain Abu_0052 PF17770 Ribonuclease J C-terminal domain Abu_0052 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Abu_0052 PF00753 Metallo-beta-lactamase superfamily Abu_0053 PF00398 Ribosomal RNA adenine dimethylase Abu_0054 PF00977 Histidine biosynthesis protein Abu_0057 PF04055 Radical SAM superfamily Abu_0058 PF00749 tRNA synthetases class I (E and Q), catalytic domain Abu_0059 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Abu_0060 PF00072 Response regulator receiver domain Abu_0060 PF00486 Transcriptional regulatory protein, C terminal Abu_0061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0065 PF00873 AcrB/AcrD/AcrF family Abu_0066 PF04264 YceI-like domain Abu_0071 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Abu_0071 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Abu_0071 PF03129 Anticodon binding domain Abu_0072 PF00707 Translation initiation factor IF-3, C-terminal domain Abu_0072 PF05198 Translation initiation factor IF-3, N-terminal domain Abu_0073 PF01632 Ribosomal protein L35 Abu_0074 PF00453 Ribosomal protein L20 Abu_0077 PF07992 Pyridine nucleotide-disulphide oxidoreductase Abu_0078 PF12804 MobA-like NTP transferase domain Abu_0079 PF00330 Aconitase family (aconitate hydratase) Abu_0080 PF01252 Signal peptidase (SPase) II Abu_0081 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Abu_0081 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Abu_0081 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Abu_0081 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Abu_0082 PF01649 Ribosomal protein S20 Abu_0083 PF00472 RF-1 domain Abu_0083 PF03462 PCRF domain Abu_0085 PF12849 PBP superfamily domain Abu_0086 PF00563 EAL domain Abu_0086 PF12792 CSS motif domain associated with EAL Abu_0087 PF00528 Binding-protein-dependent transport system inner membrane component Abu_0088 PF00528 Binding-protein-dependent transport system inner membrane component Abu_0089 PF00005 ABC transporter Abu_0090 PF01895 PhoU domain Abu_0092 PF00072 Response regulator receiver domain Abu_0092 PF00486 Transcriptional regulatory protein, C terminal Abu_0093 PF00512 His Kinase A (phospho-acceptor) domain Abu_0093 PF00989 PAS fold Abu_0093 PF16736 Single Cache-like Abu_0093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0094 PF00572 Ribosomal protein L13 Abu_0095 PF00380 Ribosomal protein S9/S16 Abu_0096 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Abu_0097 PF13419 Haloacid dehalogenase-like hydrolase Abu_0100 PF01970 Tripartite tricarboxylate transporter TctA family Abu_0101 PF00486 Transcriptional regulatory protein, C terminal Abu_0101 PF00072 Response regulator receiver domain Abu_0101 PF01627 Hpt domain Abu_0102 PF08447 PAS fold Abu_0102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0102 PF08448 PAS fold Abu_0103 PF00484 Carbonic anhydrase Abu_0107 PF00005 ABC transporter Abu_0107 PF09383 NIL domain Abu_0108 PF02405 Permease MlaE Abu_0111 PF02664 S-Ribosylhomocysteinase (LuxS) Abu_0114 PF00768 D-alanyl-D-alanine carboxypeptidase Abu_0114 PF07943 Penicillin-binding protein 5, C-terminal domain Abu_0117 PF00809 Pterin binding enzyme Abu_0117 PF02965 Vitamin B12 dependent methionine synthase, activation domain Abu_0117 PF02607 B12 binding domain Abu_0117 PF02310 B12 binding domain Abu_0117 PF02574 Homocysteine S-methyltransferase Abu_0118 PF01063 Amino-transferase class IV Abu_0121 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Abu_0121 PF01502 Phosphoribosyl-AMP cyclohydrolase Abu_0123 PF10609 NUBPL iron-transfer P-loop NTPase Abu_0123 PF01883 Iron-sulfur cluster assembly protein Abu_0124 PF01964 Radical SAM ThiC family Abu_0126 PF02542 YgbB family Abu_0126 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Abu_0128 PF04608 Phosphatidylglycerophosphatase A Abu_0130 PF00117 Glutamine amidotransferase class-I Abu_0130 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Abu_0132 PF00709 Adenylosuccinate synthetase Abu_0133 PF13393 Histidyl-tRNA synthetase Abu_0134 PF00266 Aminotransferase class-V Abu_0135 PF04264 YceI-like domain Abu_0136 PF01047 MarR family Abu_0137 PF04264 YceI-like domain Abu_0139 PF17954 Quercetinase C-terminal cupin domain Abu_0139 PF02678 Pirin Abu_0140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Abu_0140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Abu_0141 PF02769 AIR synthase related protein, C-terminal domain Abu_0141 PF00586 AIR synthase related protein, N-terminal domain Abu_0142 PF17284 Spermidine synthase tetramerisation domain Abu_0143 PF01121 Dephospho-CoA kinase Abu_0144 PF01678 Diaminopimelate epimerase Abu_0145 PF02222 ATP-grasp domain Abu_0146 PF00583 Acetyltransferase (GNAT) family Abu_0153 PF01197 Ribosomal protein L31 Abu_0154 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Abu_0155 PF08032 RNA 2'-O ribose methyltransferase substrate binding Abu_0155 PF00588 SpoU rRNA Methylase family Abu_0157 PF00155 Aminotransferase class I and II Abu_0158 PF00742 Homoserine dehydrogenase Abu_0158 PF03447 Homoserine dehydrogenase, NAD binding domain Abu_0158 PF01842 ACT domain Abu_0161 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Abu_0161 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Abu_0161 PF13288 DXP reductoisomerase C-terminal domain Abu_0164 PF00814 Glycoprotease family Abu_0165 PF01253 Translation initiation factor SUI1 Abu_0166 PF01256 Carbohydrate kinase Abu_0166 PF03853 YjeF-related protein N-terminus Abu_0167 PF03091 CutA1 divalent ion tolerance protein Abu_0168 PF05690 Thiazole biosynthesis protein ThiG Abu_0176 PF00682 HMGL-like Abu_0176 PF02436 Conserved carboxylase domain Abu_0178 PF12833 Helix-turn-helix domain Abu_0179 PF01699 Sodium/calcium exchanger protein Abu_0180 PF00672 HAMP domain Abu_0180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0180 PF17200 Single Cache domain 2 Abu_0181 PF08463 EcoEI R protein C-terminal Abu_0181 PF00271 Helicase conserved C-terminal domain Abu_0181 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Abu_0181 PF04851 Type III restriction enzyme, res subunit Abu_0182 PF02779 Transketolase, pyrimidine binding domain Abu_0182 PF02780 Transketolase, C-terminal domain Abu_0182 PF00456 Transketolase, thiamine diphosphate binding domain Abu_0183 PF03788 LrgA family Abu_0184 PF04172 LrgB-like family Abu_0186 PF03994 Domain of Unknown Function (DUF350) Abu_0187 PF00375 Sodium:dicarboxylate symporter family Abu_0193 PF01553 Acyltransferase Abu_0193 PF00501 AMP-binding enzyme Abu_0193 PF13193 AMP-binding enzyme C-terminal domain Abu_0194 PF08335 GlnD PII-uridylyltransferase Abu_0194 PF01966 HD domain Abu_0197 PF12796 Ankyrin repeats (3 copies) Abu_0198 PF00543 Nitrogen regulatory protein P-II Abu_0200 PF02154 Flagellar motor switch protein FliM Abu_0200 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Abu_0201 PF02119 Flagellar P-ring protein Abu_0203 PF01313 Bacterial export proteins, family 3 Abu_0208 PF02107 Flagellar L-ring protein Abu_0210 PF02465 Flagellar hook-associated protein 2 N-terminus Abu_0210 PF07195 Flagellar hook-associated protein 2 C-terminus Abu_0210 PF07196 Flagellin hook IN motif Abu_0211 PF02561 Flagellar protein FliS Abu_0213 PF01171 PP-loop family Abu_0214 PF00919 Uncharacterized protein family UPF0004 Abu_0214 PF18693 TRAM domain Abu_0214 PF04055 Radical SAM superfamily Abu_0215 PF02569 Pantoate-beta-alanine ligase Abu_0216 PF00528 Binding-protein-dependent transport system inner membrane component Abu_0217 PF01648 4'-phosphopantetheinyl transferase superfamily Abu_0218 PF03616 Sodium/glutamate symporter Abu_0219 PF03652 Holliday junction resolvase Abu_0222 PF00923 Transaldolase/Fructose-6-phosphate aldolase Abu_0223 PF01474 Class-II DAHP synthetase family Abu_0224 PF03502 Nucleoside-specific channel-forming protein, Tsx Abu_0228 PF03960 ArsC family Abu_0229 PF02686 Glu-tRNAGln amidotransferase C subunit Abu_0230 PF01702 Queuine tRNA-ribosyltransferase Abu_0232 PF00155 Aminotransferase class I and II Abu_0234 PF01225 Mur ligase family, catalytic domain Abu_0234 PF02875 Mur ligase family, glutamate ligase domain Abu_0234 PF08245 Mur ligase middle domain Abu_0236 PF04748 Divergent polysaccharide deacetylase Abu_0237 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Abu_0237 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Abu_0238 PF00773 RNB domain Abu_0239 PF02623 FliW protein Abu_0241 PF01250 Ribosomal protein S6 Abu_0242 PF00436 Single-strand binding protein family Abu_0243 PF01084 Ribosomal protein S18 Abu_0245 PF01406 tRNA synthetases class I (C) catalytic domain Abu_0245 PF09190 DALR domain Abu_0246 PF13184 NusA-like KH domain Abu_0246 PF08529 NusA N-terminal domain Abu_0248 PF04055 Radical SAM superfamily Abu_0248 PF01938 TRAM domain Abu_0248 PF00919 Uncharacterized protein family UPF0004 Abu_0249 PF04028 Domain of unknown function (DUF374) Abu_0251 PF04055 Radical SAM superfamily Abu_0253 PF00484 Carbonic anhydrase Abu_0254 PF00155 Aminotransferase class I and II Abu_0255 PF02021 Uncharacterised protein family UPF0102 Abu_0256 PF02597 ThiS family Abu_0256 PF05690 Thiazole biosynthesis protein ThiG Abu_0258 PF00224 Pyruvate kinase, barrel domain Abu_0258 PF02887 Pyruvate kinase, alpha/beta domain Abu_0258 PF00391 PEP-utilising enzyme, mobile domain Abu_0259 PF00202 Aminotransferase class-III Abu_0261 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Abu_0261 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Abu_0262 PF00425 chorismate binding enzyme Abu_0265 PF01063 Amino-transferase class IV Abu_0266 PF03831 PhnA domain Abu_0266 PF08274 PhnA Zinc-Ribbon Abu_0267 PF01863 Protein of unknown function DUF45 Abu_0268 PF01925 Sulfite exporter TauE/SafE Abu_0274 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Abu_0274 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Abu_0277 PF00285 Citrate synthase, C-terminal domain Abu_0278 PF00694 Aconitase C-terminal domain Abu_0278 PF00330 Aconitase family (aconitate hydratase) Abu_0279 PF04303 PrpF protein Abu_0283 PF03900 Porphobilinogen deaminase, C-terminal domain Abu_0283 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Abu_0285 PF12169 DNA polymerase III subunits gamma and tau domain III Abu_0285 PF12170 DNA polymerase III tau subunit V interacting with alpha Abu_0286 PF01177 Asp/Glu/Hydantoin racemase Abu_0287 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Abu_0287 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Abu_0288 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Abu_0288 PF07498 Rho termination factor, N-terminal domain Abu_0288 PF07497 Rho termination factor, RNA-binding domain Abu_0289 PF10417 C-terminal domain of 1-Cys peroxiredoxin Abu_0289 PF00578 AhpC/TSA family Abu_0290 PF00037 4Fe-4S binding domain Abu_0291 PF00334 Nucleoside diphosphate kinase Abu_0293 PF01783 Ribosomal L32p protein family Abu_0294 PF02504 Fatty acid synthesis protein Abu_0295 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Abu_0295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Abu_0297 PF00350 Dynamin family Abu_0298 PF00350 Dynamin family Abu_0299 PF13085 2Fe-2S iron-sulfur cluster binding domain Abu_0299 PF13183 4Fe-4S dicluster domain Abu_0300 PF00890 FAD binding domain Abu_0300 PF02910 Fumarate reductase flavoprotein C-term Abu_0301 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Abu_0302 PF00361 Proton-conducting membrane transporter Abu_0303 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Abu_0303 PF00361 Proton-conducting membrane transporter Abu_0304 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Abu_0304 PF00361 Proton-conducting membrane transporter Abu_0305 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Abu_0306 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Abu_0307 PF12838 4Fe-4S dicluster domain Abu_0308 PF00146 NADH dehydrogenase Abu_0309 PF00384 Molybdopterin oxidoreductase Abu_0309 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Abu_0309 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Abu_0310 PF00285 Citrate synthase, C-terminal domain Abu_0311 PF10531 SLBB domain Abu_0311 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Abu_0311 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Abu_0313 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Abu_0313 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Abu_0314 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Abu_0315 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Abu_0316 PF00155 Aminotransferase class I and II Abu_0317 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Abu_0318 PF12821 Threonine/Serine exporter, ThrE Abu_0318 PF06738 Putative threonine/serine exporter Abu_0319 PF06738 Putative threonine/serine exporter Abu_0321 PF03309 Type III pantothenate kinase Abu_0322 PF01634 ATP phosphoribosyltransferase Abu_0324 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0324 PF02203 Tar ligand binding domain homologue Abu_0324 PF00672 HAMP domain Abu_0325 PF06977 SdiA-regulated Abu_0327 PF00579 tRNA synthetases class I (W and Y) Abu_0328 PF00593 TonB dependent receptor Abu_0331 PF13649 Methyltransferase domain Abu_0333 PF07715 TonB-dependent Receptor Plug Domain Abu_0333 PF00593 TonB dependent receptor Abu_0335 PF02659 Putative manganese efflux pump Abu_0336 PF07690 Major Facilitator Superfamily Abu_0338 PF00664 ABC transporter transmembrane region Abu_0338 PF00005 ABC transporter Abu_0339 PF00664 ABC transporter transmembrane region Abu_0339 PF00005 ABC transporter Abu_0339 PF08021 Siderophore-interacting FAD-binding domain Abu_0339 PF04954 Siderophore-interacting protein Abu_0340 PF07715 TonB-dependent Receptor Plug Domain Abu_0340 PF00593 TonB dependent receptor Abu_0344 PF01545 Cation efflux family Abu_0345 PF02403 Seryl-tRNA synthetase N-terminal domain Abu_0345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Abu_0346 PF01578 Cytochrome C assembly protein Abu_0346 PF05140 ResB-like family Abu_0347 PF02335 Cytochrome c552 Abu_0348 PF03264 NapC/NirT cytochrome c family, N-terminal region Abu_0350 PF00990 Diguanylate cyclase, GGDEF domain Abu_0350 PF00563 EAL domain Abu_0350 PF08495 FIST N domain Abu_0350 PF10442 FIST C domain Abu_0351 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0351 PF08447 PAS fold Abu_0355 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Abu_0356 PF00037 4Fe-4S binding domain Abu_0356 PF12801 4Fe-4S binding domain Abu_0357 PF12838 4Fe-4S dicluster domain Abu_0357 PF12800 4Fe-4S binding domain Abu_0358 PF01568 Molydopterin dinucleotide binding domain Abu_0358 PF00384 Molybdopterin oxidoreductase Abu_0358 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Abu_0358 PF10518 TAT (twin-arginine translocation) pathway signal sequence Abu_0359 PF03480 Bacterial extracellular solute-binding protein, family 7 Abu_0360 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Abu_0361 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Abu_0362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0362 PF08447 PAS fold Abu_0362 PF08448 PAS fold Abu_0363 PF00072 Response regulator receiver domain Abu_0364 PF03737 Aldolase/RraA Abu_0365 PF10414 Sirohaem synthase dimerisation region Abu_0365 PF14824 Sirohaem biosynthesis protein central Abu_0365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Abu_0367 PF00027 Cyclic nucleotide-binding domain Abu_0367 PF13545 Crp-like helix-turn-helix domain Abu_0368 PF02885 Glycosyl transferase family, helical bundle domain Abu_0368 PF00591 Glycosyl transferase family, a/b domain Abu_0369 PF06463 Molybdenum Cofactor Synthesis C Abu_0369 PF04055 Radical SAM superfamily Abu_0370 PF00312 Ribosomal protein S15 Abu_0373 PF13380 CoA binding domain Abu_0374 PF08521 Two-component sensor kinase N-terminal Abu_0374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0374 PF00512 His Kinase A (phospho-acceptor) domain Abu_0375 PF00486 Transcriptional regulatory protein, C terminal Abu_0375 PF00072 Response regulator receiver domain Abu_0376 PF00639 PPIC-type PPIASE domain Abu_0377 PF01116 Fructose-bisphosphate aldolase class-II Abu_0378 PF00171 Aldehyde dehydrogenase family Abu_0380 PF02472 Biopolymer transport protein ExbD/TolR Abu_0381 PF01618 MotA/TolQ/ExbB proton channel family Abu_0383 PF01202 Shikimate kinase Abu_0384 PF00815 Histidinol dehydrogenase Abu_0386 PF00348 Polyprenyl synthetase Abu_0387 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Abu_0387 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Abu_0387 PF01488 Shikimate / quinate 5-dehydrogenase Abu_0388 PF03129 Anticodon binding domain Abu_0388 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Abu_0388 PF04073 Aminoacyl-tRNA editing domain Abu_0389 PF00924 Mechanosensitive ion channel Abu_0389 PF05552 Conserved TM helix Abu_0390 PF12627 Probable RNA and SrmB- binding site of polymerase A Abu_0390 PF01743 Poly A polymerase head domain Abu_0390 PF01966 HD domain Abu_0394 PF02699 Preprotein translocase subunit Abu_0395 PF02355 Protein export membrane protein Abu_0396 PF07549 SecD/SecF GG Motif Abu_0396 PF02355 Protein export membrane protein Abu_0399 PF13677 Membrane MotB of proton-channel complex MotA/MotB Abu_0399 PF00691 OmpA family Abu_0400 PF01618 MotA/TolQ/ExbB proton channel family Abu_0402 PF00133 tRNA synthetases class I (I, L, M and V) Abu_0402 PF13603 Leucyl-tRNA synthetase, Domain 2 Abu_0402 PF09334 tRNA synthetases class I (M) Abu_0404 PF08245 Mur ligase middle domain Abu_0410 PF02559 CarD-like/TRCF domain Abu_0410 PF17757 UvrB interaction domain Abu_0410 PF03461 TRCF domain Abu_0410 PF00271 Helicase conserved C-terminal domain Abu_0410 PF00270 DEAD/DEAH box helicase Abu_0414 PF00072 Response regulator receiver domain Abu_0414 PF00486 Transcriptional regulatory protein, C terminal Abu_0417 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0417 PF00672 HAMP domain Abu_0417 PF02743 Cache domain Abu_0418 PF00072 Response regulator receiver domain Abu_0418 PF00158 Sigma-54 interaction domain Abu_0418 PF02954 Bacterial regulatory protein, Fis family Abu_0420 PF00672 HAMP domain Abu_0420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0420 PF00512 His Kinase A (phospho-acceptor) domain Abu_0420 PF13426 PAS domain Abu_0421 PF13277 YmdB-like protein Abu_0424 PF01209 ubiE/COQ5 methyltransferase family Abu_0425 PF02601 Exonuclease VII, large subunit Abu_0425 PF13742 OB-fold nucleic acid binding domain Abu_0426 PF01584 CheW-like domain Abu_0427 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Abu_0428 PF02261 Aspartate decarboxylase Abu_0429 PF02575 YbaB/EbfC DNA-binding family Abu_0430 PF00348 Polyprenyl synthetase Abu_0431 PF00166 Chaperonin 10 Kd subunit Abu_0432 PF00118 TCP-1/cpn60 chaperonin family Abu_0433 PF18719 ArlS sensor domain Abu_0433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0433 PF00512 His Kinase A (phospho-acceptor) domain Abu_0434 PF00486 Transcriptional regulatory protein, C terminal Abu_0434 PF00072 Response regulator receiver domain Abu_0435 PF00149 Calcineurin-like phosphoesterase Abu_0440 PF00005 ABC transporter Abu_0443 PF00459 Inositol monophosphatase family Abu_0444 PF01380 SIS domain Abu_0445 PF02772 S-adenosylmethionine synthetase, central domain Abu_0445 PF02773 S-adenosylmethionine synthetase, C-terminal domain Abu_0445 PF00438 S-adenosylmethionine synthetase, N-terminal domain Abu_0446 PF17848 Acetyl-coA carboxylase zinc finger domain Abu_0446 PF01039 Carboxyl transferase domain Abu_0447 PF02581 Thiamine monophosphate synthase Abu_0448 PF02590 Predicted SPOUT methyltransferase Abu_0450 PF01207 Dihydrouridine synthase (Dus) Abu_0452 PF00004 ATPase family associated with various cellular activities (AAA) Abu_0452 PF17862 AAA+ lid domain Abu_0452 PF01434 Peptidase family M41 Abu_0453 PF11849 Domain of unknown function (DUF3369) Abu_0454 PF00072 Response regulator receiver domain Abu_0454 PF00486 Transcriptional regulatory protein, C terminal Abu_0455 PF08448 PAS fold Abu_0455 PF08447 PAS fold Abu_0455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0456 PF00682 HMGL-like Abu_0456 PF08502 LeuA allosteric (dimerisation) domain Abu_0459 PF00488 MutS domain V Abu_0459 PF05192 MutS domain III Abu_0459 PF05188 MutS domain II Abu_0459 PF01624 MutS domain I Abu_0459 PF05190 MutS family domain IV Abu_0460 PF00873 AcrB/AcrD/AcrF family Abu_0461 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Abu_0467 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit Abu_0469 PF00005 ABC transporter Abu_0469 PF00664 ABC transporter transmembrane region Abu_0469 PF03412 Peptidase C39 family Abu_0471 PF01266 FAD dependent oxidoreductase Abu_0472 PF00990 Diguanylate cyclase, GGDEF domain Abu_0473 PF00977 Histidine biosynthesis protein Abu_0474 PF08338 Domain of unknown function (DUF1731) Abu_0474 PF01370 NAD dependent epimerase/dehydratase family Abu_0475 PF00117 Glutamine amidotransferase class-I Abu_0478 PF06421 GTP-binding protein LepA C-terminus Abu_0478 PF00009 Elongation factor Tu GTP binding domain Abu_0478 PF03144 Elongation factor Tu domain 2 Abu_0478 PF00679 Elongation factor G C-terminus Abu_0479 PF02583 Metal-sensitive transcriptional repressor Abu_0480 PF00403 Heavy-metal-associated domain Abu_0481 PF00691 OmpA family Abu_0481 PF05736 OprF membrane domain Abu_0482 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Abu_0482 PF14572 Phosphoribosyl synthetase-associated domain Abu_0486 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Abu_0487 PF00557 Metallopeptidase family M24 Abu_0487 PF01321 Creatinase/Prolidase N-terminal domain Abu_0488 PF01220 Dehydroquinase class II Abu_0489 PF01979 Amidohydrolase family Abu_0490 PF01343 Peptidase family S49 Abu_0492 PF00871 Acetokinase family Abu_0493 PF01515 Phosphate acetyl/butaryl transferase Abu_0494 PF00871 Acetokinase family Abu_0496 PF00871 Acetokinase family Abu_0497 PF14579 Helix-hairpin-helix motif Abu_0497 PF02811 PHP domain Abu_0497 PF14480 DNA polymerase III polC-type N-terminus I Abu_0497 PF11490 DNA polymerase III polC-type N-terminus II Abu_0497 PF07733 Bacterial DNA polymerase III alpha NTPase domain Abu_0497 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Abu_0497 PF00929 Exonuclease Abu_0499 PF00474 Sodium:solute symporter family Abu_0501 PF00474 Sodium:solute symporter family Abu_0503 PF11490 DNA polymerase III polC-type N-terminus II Abu_0503 PF07733 Bacterial DNA polymerase III alpha NTPase domain Abu_0503 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Abu_0503 PF14579 Helix-hairpin-helix motif Abu_0503 PF00929 Exonuclease Abu_0503 PF02811 PHP domain Abu_0505 PF00474 Sodium:solute symporter family Abu_0507 PF00072 Response regulator receiver domain Abu_0507 PF00486 Transcriptional regulatory protein, C terminal Abu_0508 PF00672 HAMP domain Abu_0508 PF00512 His Kinase A (phospho-acceptor) domain Abu_0508 PF13426 PAS domain Abu_0508 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0517 PF18146 Damage-inducible protein CinA KH domain Abu_0517 PF02464 Competence-damaged protein Abu_0517 PF00994 Probable molybdopterin binding domain Abu_0518 PF06039 Malate:quinone oxidoreductase (Mqo) Abu_0519 PF00133 tRNA synthetases class I (I, L, M and V) Abu_0519 PF08264 Anticodon-binding domain of tRNA Abu_0522 PF02875 Mur ligase family, glutamate ligase domain Abu_0522 PF08245 Mur ligase middle domain Abu_0524 PF00248 Aldo/keto reductase family Abu_0525 PF01384 Phosphate transporter family Abu_0526 PF02203 Tar ligand binding domain homologue Abu_0526 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0526 PF00672 HAMP domain Abu_0528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0528 PF00672 HAMP domain Abu_0528 PF02203 Tar ligand binding domain homologue Abu_0529 PF03061 Thioesterase superfamily Abu_0531 PF01435 Peptidase family M48 Abu_0531 PF16491 CAAX prenyl protease N-terminal, five membrane helices Abu_0532 PF02646 RmuC family Abu_0534 PF03454 MoeA C-terminal region (domain IV) Abu_0534 PF03453 MoeA N-terminal region (domain I and II) Abu_0534 PF00994 Probable molybdopterin binding domain Abu_0536 PF01171 PP-loop family Abu_0540 PF00318 Ribosomal protein S2 Abu_0541 PF00889 Elongation factor TS Abu_0542 PF00005 ABC transporter Abu_0544 PF00625 Guanylate kinase Abu_0545 PF00990 Diguanylate cyclase, GGDEF domain Abu_0545 PF00563 EAL domain Abu_0545 PF08448 PAS fold Abu_0546 PF00403 Heavy-metal-associated domain Abu_0549 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Abu_0549 PF00005 ABC transporter Abu_0550 PF00762 Ferrochelatase Abu_0551 PF07664 Ferrous iron transport protein B C terminus Abu_0551 PF02421 Ferrous iron transport protein B Abu_0551 PF07670 Nucleoside recognition Abu_0553 PF02698 DUF218 domain Abu_0554 PF00005 ABC transporter Abu_0555 PF00950 ABC 3 transport family Abu_0556 PF13509 S1 domain Abu_0556 PF17783 CvfB-like winged helix domain Abu_0557 PF08534 Redoxin Abu_0561 PF00174 Oxidoreductase molybdopterin binding domain Abu_0562 PF01794 Ferric reductase like transmembrane component Abu_0563 PF00580 UvrD/REP helicase N-terminal domain Abu_0563 PF13361 UvrD-like helicase C-terminal domain Abu_0564 PF02080 TrkA-C domain Abu_0564 PF00999 Sodium/hydrogen exchanger family Abu_0564 PF02254 TrkA-N domain Abu_0565 PF00174 Oxidoreductase molybdopterin binding domain Abu_0573 PF03190 Protein of unknown function, DUF255 Abu_0578 PF00753 Metallo-beta-lactamase superfamily Abu_0581 PF08264 Anticodon-binding domain of tRNA Abu_0581 PF00133 tRNA synthetases class I (I, L, M and V) Abu_0581 PF10458 Valyl tRNA synthetase tRNA binding arm Abu_0583 PF09962 Uncharacterized conserved protein (DUF2196) Abu_0585 PF07690 Major Facilitator Superfamily Abu_0586 PF01725 Ham1 family Abu_0590 PF03807 NADP oxidoreductase coenzyme F420-dependent Abu_0590 PF14748 Pyrroline-5-carboxylate reductase dimerisation Abu_0591 PF13525 Outer membrane lipoprotein Abu_0592 PF00004 ATPase family associated with various cellular activities (AAA) Abu_0592 PF05362 Lon protease (S16) C-terminal proteolytic domain Abu_0592 PF02190 ATP-dependent protease La (LON) substrate-binding domain Abu_0594 PF01451 Low molecular weight phosphotyrosine protein phosphatase Abu_0597 PF01047 MarR family Abu_0602 PF08447 PAS fold Abu_0602 PF13426 PAS domain Abu_0602 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0605 PF02785 Biotin carboxylase C-terminal domain Abu_0605 PF00289 Biotin carboxylase, N-terminal domain Abu_0605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Abu_0606 PF01883 Iron-sulfur cluster assembly protein Abu_0607 PF02657 Fe-S metabolism associated domain Abu_0608 PF00266 Aminotransferase class-V Abu_0610 PF00005 ABC transporter Abu_0611 PF01458 Uncharacterized protein family (UPF0051) Abu_0612 PF00266 Aminotransferase class-V Abu_0613 PF04324 BFD-like [2Fe-2S] binding domain Abu_0613 PF01592 NifU-like N terminal domain Abu_0613 PF01106 NifU-like domain Abu_0614 PF01769 Divalent cation transporter Abu_0614 PF03448 MgtE intracellular N domain Abu_0614 PF00571 CBS domain Abu_0615 PF00990 Diguanylate cyclase, GGDEF domain Abu_0615 PF07694 5TMR of 5TMR-LYT Abu_0616 PF14698 Argininosuccinate lyase C-terminal Abu_0616 PF00206 Lyase Abu_0617 PF01584 CheW-like domain Abu_0617 PF00072 Response regulator receiver domain Abu_0618 PF00899 ThiF family Abu_0619 PF03449 Transcription elongation factor, N-terminal Abu_0619 PF01272 Transcription elongation factor, GreA/GreB, C-term Abu_0621 PF00271 Helicase conserved C-terminal domain Abu_0621 PF17757 UvrB interaction domain Abu_0621 PF12344 Ultra-violet resistance protein B Abu_0621 PF04851 Type III restriction enzyme, res subunit Abu_0621 PF02151 UvrB/uvrC motif Abu_0622 PF00672 HAMP domain Abu_0622 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0622 PF02203 Tar ligand binding domain homologue Abu_0623 PF00730 HhH-GPD superfamily base excision DNA repair protein Abu_0623 PF00633 Helix-hairpin-helix motif Abu_0623 PF10576 Iron-sulfur binding domain of endonuclease III Abu_0627 PF02203 Tar ligand binding domain homologue Abu_0627 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0627 PF00672 HAMP domain Abu_0630 PF00486 Transcriptional regulatory protein, C terminal Abu_0630 PF01627 Hpt domain Abu_0630 PF00072 Response regulator receiver domain Abu_0631 PF00989 PAS fold Abu_0631 PF00512 His Kinase A (phospho-acceptor) domain Abu_0631 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0632 PF02203 Tar ligand binding domain homologue Abu_0632 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0632 PF00672 HAMP domain Abu_0633 PF02203 Tar ligand binding domain homologue Abu_0633 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0633 PF00672 HAMP domain Abu_0635 PF02502 Ribose/Galactose Isomerase Abu_0636 PF10502 Signal peptidase, peptidase S26 Abu_0637 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Abu_0637 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Abu_0638 PF14693 Ribosomal protein TL5, C-terminal domain Abu_0638 PF01386 Ribosomal L25p family Abu_0639 PF01195 Peptidyl-tRNA hydrolase Abu_0642 PF01520 N-acetylmuramoyl-L-alanine amidase Abu_0644 PF01479 S4 domain Abu_0644 PF00579 tRNA synthetases class I (W and Y) Abu_0645 PF02824 TGS domain Abu_0645 PF13291 ACT domain Abu_0645 PF04607 Region found in RelA / SpoT proteins Abu_0646 PF01192 RNA polymerase Rpb6 Abu_0647 PF00696 Amino acid kinase family Abu_0649 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Abu_0650 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Abu_0651 PF04715 Anthranilate synthase component I, N terminal region Abu_0651 PF00425 chorismate binding enzyme Abu_0653 PF00464 Serine hydroxymethyltransferase Abu_0654 PF01336 OB-fold nucleic acid binding domain Abu_0654 PF00152 tRNA synthetases class II (D, K and N) Abu_0656 PF04551 GcpE protein Abu_0657 PF00990 Diguanylate cyclase, GGDEF domain Abu_0658 PF03796 DnaB-like helicase C terminal domain Abu_0658 PF00772 DnaB-like helicase N terminal domain Abu_0659 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Abu_0659 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Abu_0659 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Abu_0660 PF01370 NAD dependent epimerase/dehydratase family Abu_0661 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Abu_0661 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Abu_0661 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Abu_0662 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Abu_0662 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Abu_0663 PF00132 Bacterial transferase hexapeptide (six repeats) Abu_0664 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Abu_0665 PF01266 FAD dependent oxidoreductase Abu_0666 PF16363 GDP-mannose 4,6 dehydratase Abu_0667 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Abu_0668 PF13537 Glutamine amidotransferase domain Abu_0668 PF00733 Asparagine synthase Abu_0671 PF00117 Glutamine amidotransferase class-I Abu_0672 PF00977 Histidine biosynthesis protein Abu_0675 PF00664 ABC transporter transmembrane region Abu_0675 PF00005 ABC transporter Abu_0676 PF01757 Acyltransferase family Abu_0677 PF00534 Glycosyl transferases group 1 Abu_0677 PF13439 Glycosyltransferase Family 4 Abu_0678 PF00733 Asparagine synthase Abu_0678 PF13537 Glutamine amidotransferase domain Abu_0680 PF00953 Glycosyl transferase family 4 Abu_0684 PF00132 Bacterial transferase hexapeptide (six repeats) Abu_0687 PF00534 Glycosyl transferases group 1 Abu_0687 PF13439 Glycosyltransferase Family 4 Abu_0688 PF02540 NAD synthase Abu_0688 PF00117 Glutamine amidotransferase class-I Abu_0688 PF00958 GMP synthase C terminal domain Abu_0689 PF00117 Glutamine amidotransferase class-I Abu_0690 PF00977 Histidine biosynthesis protein Abu_0692 PF02350 UDP-N-acetylglucosamine 2-epimerase Abu_0693 PF00535 Glycosyl transferase family 2 Abu_0694 PF00953 Glycosyl transferase family 4 Abu_0695 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Abu_0696 PF02719 Polysaccharide biosynthesis protein Abu_0698 PF01068 ATP dependent DNA ligase domain Abu_0698 PF14743 DNA ligase OB-like domain Abu_0699 PF00156 Phosphoribosyl transferase domain Abu_0700 PF00291 Pyridoxal-phosphate dependent enzyme Abu_0702 PF00883 Cytosol aminopeptidase family, catalytic domain Abu_0702 PF02789 Cytosol aminopeptidase family, N-terminal domain Abu_0704 PF02472 Biopolymer transport protein ExbD/TolR Abu_0705 PF01618 MotA/TolQ/ExbB proton channel family Abu_0708 PF12704 MacB-like periplasmic core domain Abu_0708 PF02687 FtsX-like permease family Abu_0708 PF00005 ABC transporter Abu_0709 PF02687 FtsX-like permease family Abu_0709 PF00005 ABC transporter Abu_0709 PF12704 MacB-like periplasmic core domain Abu_0717 PF01475 Ferric uptake regulator family Abu_0719 PF10415 Fumarase C C-terminus Abu_0719 PF00206 Lyase Abu_0721 PF13581 Histidine kinase-like ATPase domain Abu_0721 PF07568 Histidine kinase Abu_0721 PF13426 PAS domain Abu_0722 PF00072 Response regulator receiver domain Abu_0723 PF07715 TonB-dependent Receptor Plug Domain Abu_0723 PF00593 TonB dependent receptor Abu_0724 PF18331 PKHD-type hydroxylase C-terminal domain Abu_0724 PF13640 2OG-Fe(II) oxygenase superfamily Abu_0725 PF01070 FMN-dependent dehydrogenase Abu_0726 PF07715 TonB-dependent Receptor Plug Domain Abu_0726 PF00593 TonB dependent receptor Abu_0727 PF00756 Putative esterase Abu_0728 PF13847 Methyltransferase domain Abu_0732 PF02554 Carbon starvation protein CstA Abu_0732 PF13722 5TM C-terminal transporter carbon starvation CstA Abu_0733 PF06071 Protein of unknown function (DUF933) Abu_0733 PF01926 50S ribosome-binding GTPase Abu_0737 PF06865 Pyrimidine/purine nucleoside phosphorylase Abu_0739 PF00072 Response regulator receiver domain Abu_0739 PF00990 Diguanylate cyclase, GGDEF domain Abu_0740 PF00586 AIR synthase related protein, N-terminal domain Abu_0740 PF02769 AIR synthase related protein, C-terminal domain Abu_0741 PF01142 tRNA pseudouridine synthase D (TruD) Abu_0743 PF00672 HAMP domain Abu_0743 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0743 PF02203 Tar ligand binding domain homologue Abu_0744 PF07499 RuvA, C-terminal domain Abu_0744 PF01330 RuvA N terminal domain Abu_0745 PF01820 D-ala D-ala ligase N-terminus Abu_0745 PF07478 D-ala D-ala ligase C-terminus Abu_0747 PF08245 Mur ligase middle domain Abu_0747 PF02875 Mur ligase family, glutamate ligase domain Abu_0748 PF01230 HIT domain Abu_0751 PF00338 Ribosomal protein S10p/S20e Abu_0752 PF00297 Ribosomal protein L3 Abu_0753 PF00573 Ribosomal protein L4/L1 family Abu_0754 PF00276 Ribosomal protein L23 Abu_0755 PF03947 Ribosomal Proteins L2, C-terminal domain Abu_0755 PF00181 Ribosomal Proteins L2, RNA binding domain Abu_0756 PF00203 Ribosomal protein S19 Abu_0757 PF00237 Ribosomal protein L22p/L17e Abu_0758 PF07650 KH domain Abu_0758 PF00189 Ribosomal protein S3, C-terminal domain Abu_0759 PF00252 Ribosomal protein L16p/L10e Abu_0760 PF00831 Ribosomal L29 protein Abu_0761 PF00366 Ribosomal protein S17 Abu_0762 PF00238 Ribosomal protein L14p/L23e Abu_0763 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Abu_0763 PF00467 KOW motif Abu_0764 PF00673 ribosomal L5P family C-terminus Abu_0764 PF00281 Ribosomal protein L5 Abu_0765 PF00253 Ribosomal protein S14p/S29e Abu_0766 PF00410 Ribosomal protein S8 Abu_0767 PF00347 Ribosomal protein L6 Abu_0768 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Abu_0769 PF00333 Ribosomal protein S5, N-terminal domain Abu_0769 PF03719 Ribosomal protein S5, C-terminal domain Abu_0770 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Abu_0771 PF00344 SecY translocase Abu_0772 PF00557 Metallopeptidase family M24 Abu_0773 PF01176 Translation initiation factor 1A / IF-1 Abu_0774 PF03167 Uracil DNA glycosylase superfamily Abu_0776 PF01336 OB-fold nucleic acid binding domain Abu_0776 PF00152 tRNA synthetases class II (D, K and N) Abu_0776 PF02938 GAD domain Abu_0778 PF08497 Radical SAM N-terminal Abu_0778 PF04055 Radical SAM superfamily Abu_0779 PF05191 Adenylate kinase, active site lid Abu_0782 PF00302 Chloramphenicol acetyltransferase Abu_0783 PF08240 Alcohol dehydrogenase GroES-like domain Abu_0783 PF00107 Zinc-binding dehydrogenase Abu_0784 PF00465 Iron-containing alcohol dehydrogenase Abu_0785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0785 PF02203 Tar ligand binding domain homologue Abu_0785 PF00672 HAMP domain Abu_0786 PF01168 Alanine racemase, N-terminal domain Abu_0786 PF00842 Alanine racemase, C-terminal domain Abu_0787 PF08459 UvrC Helix-hairpin-helix N-terminal Abu_0787 PF02151 UvrB/uvrC motif Abu_0787 PF01541 GIY-YIG catalytic domain Abu_0788 PF02203 Tar ligand binding domain homologue Abu_0788 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0788 PF00672 HAMP domain Abu_0790 PF02203 Tar ligand binding domain homologue Abu_0790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0790 PF00672 HAMP domain Abu_0791 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0791 PF00672 HAMP domain Abu_0791 PF02203 Tar ligand binding domain homologue Abu_0792 PF00072 Response regulator receiver domain Abu_0792 PF00486 Transcriptional regulatory protein, C terminal Abu_0793 PF00072 Response regulator receiver domain Abu_0793 PF00990 Diguanylate cyclase, GGDEF domain Abu_0794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0794 PF00512 His Kinase A (phospho-acceptor) domain Abu_0794 PF09308 LuxQ, periplasmic Abu_0794 PF00072 Response regulator receiver domain Abu_0795 PF00293 NUDIX domain Abu_0795 PF13344 Haloacid dehalogenase-like hydrolase Abu_0800 PF02653 Branched-chain amino acid transport system / permease component Abu_0802 PF12399 Branched-chain amino acid ATP-binding cassette transporter Abu_0802 PF00005 ABC transporter Abu_0803 PF00005 ABC transporter Abu_0805 PF01774 UreD urease accessory protein Abu_0806 PF00547 Urease, gamma subunit Abu_0806 PF00699 Urease beta subunit Abu_0807 PF01979 Amidohydrolase family Abu_0807 PF00449 Urease alpha-subunit, N-terminal domain Abu_0808 PF05194 UreE urease accessory protein, C-terminal domain Abu_0810 PF02492 CobW/HypB/UreG, nucleotide-binding domain Abu_0812 PF00440 Bacterial regulatory proteins, tetR family Abu_0812 PF08360 QacR-like protein, C-terminal region Abu_0813 PF00873 AcrB/AcrD/AcrF family Abu_0814 PF00529 HlyD membrane-fusion protein of T1SS Abu_0814 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Abu_0820 PF00990 Diguanylate cyclase, GGDEF domain Abu_0820 PF08448 PAS fold Abu_0821 PF03372 Endonuclease/Exonuclease/phosphatase family Abu_0825 PF08212 Lipocalin-like domain Abu_0828 PF03109 ABC1 family Abu_0830 PF00563 EAL domain Abu_0830 PF12792 CSS motif domain associated with EAL Abu_0831 PF00072 Response regulator receiver domain Abu_0831 PF04397 LytTr DNA-binding domain Abu_0832 PF07694 5TMR of 5TMR-LYT Abu_0832 PF06580 Histidine kinase Abu_0832 PF13492 GAF domain Abu_0832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0833 PF01593 Flavin containing amine oxidoreductase Abu_0834 PF03441 FAD binding domain of DNA photolyase Abu_0834 PF00875 DNA photolyase Abu_0838 PF00342 Phosphoglucose isomerase Abu_0839 PF00483 Nucleotidyl transferase Abu_0840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Abu_0840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Abu_0840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Abu_0840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Abu_0846 PF00672 HAMP domain Abu_0846 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0846 PF02203 Tar ligand binding domain homologue Abu_0847 PF08447 PAS fold Abu_0847 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0848 PF01361 Tautomerase enzyme Abu_0849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Abu_0849 PF03466 LysR substrate binding domain Abu_0850 PF00218 Indole-3-glycerol phosphate synthase Abu_0852 PF03692 Putative zinc- or iron-chelating domain Abu_0853 PF05175 Methyltransferase small domain Abu_0855 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Abu_0855 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Abu_0855 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Abu_0856 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Abu_0858 PF14480 DNA polymerase III polC-type N-terminus I Abu_0858 PF11490 DNA polymerase III polC-type N-terminus II Abu_0858 PF07733 Bacterial DNA polymerase III alpha NTPase domain Abu_0858 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Abu_0858 PF14579 Helix-hairpin-helix motif Abu_0858 PF02811 PHP domain Abu_0858 PF00929 Exonuclease Abu_0859 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Abu_0860 PF00834 Ribulose-phosphate 3 epimerase family Abu_0861 PF02253 Phospholipase A1 Abu_0863 PF00293 NUDIX domain Abu_0864 PF04461 Protein of unknown function (DUF520) Abu_0866 PF04241 Protein of unknown function (DUF423) Abu_0867 PF00156 Phosphoribosyl transferase domain Abu_0870 PF01168 Alanine racemase, N-terminal domain Abu_0871 PF17820 PDZ domain Abu_0871 PF02163 Peptidase family M50 Abu_0872 PF01066 CDP-alcohol phosphatidyltransferase Abu_0874 PF00701 Dihydrodipicolinate synthetase family Abu_0876 PF01180 Dihydroorotate dehydrogenase Abu_0877 PF00664 ABC transporter transmembrane region Abu_0877 PF00005 ABC transporter Abu_0878 PF03023 Lipid II flippase MurJ Abu_0881 PF02130 Uncharacterized protein family UPF0054 Abu_0883 PF03575 Peptidase family S51 Abu_0884 PF18073 Rubredoxin metal binding domain Abu_0885 PF05728 Uncharacterised protein family (UPF0227) Abu_0886 PF03150 Di-haem cytochrome c peroxidase Abu_0886 PF00034 Cytochrome c Abu_0886 PF14376 Haem-binding domain Abu_0887 PF03707 Bacterial signalling protein N terminal repeat Abu_0887 PF00990 Diguanylate cyclase, GGDEF domain Abu_0887 PF00563 EAL domain Abu_0889 PF00448 SRP54-type protein, GTPase domain Abu_0890 PF00578 AhpC/TSA family Abu_0891 PF01812 5-formyltetrahydrofolate cyclo-ligase family Abu_0892 PF12072 Domain of unknown function (DUF3552) Abu_0892 PF00013 KH domain Abu_0892 PF01966 HD domain Abu_0894 PF12911 N-terminal TM domain of oligopeptide transport permease C Abu_0894 PF00528 Binding-protein-dependent transport system inner membrane component Abu_0899 PF00106 short chain dehydrogenase Abu_0902 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Abu_0904 PF00486 Transcriptional regulatory protein, C terminal Abu_0904 PF00072 Response regulator receiver domain Abu_0905 PF00512 His Kinase A (phospho-acceptor) domain Abu_0905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_0906 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Abu_0906 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Abu_0907 PF00990 Diguanylate cyclase, GGDEF domain Abu_0908 PF09424 Yqey-like protein Abu_0909 PF00005 ABC transporter Abu_0909 PF16326 ABC transporter C-terminal domain Abu_0909 PF12848 ABC transporter Abu_0911 PF07992 Pyridine nucleotide-disulphide oxidoreductase Abu_0912 PF00561 alpha/beta hydrolase fold Abu_0916 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Abu_0921 PF02540 NAD synthase Abu_0921 PF00958 GMP synthase C terminal domain Abu_0921 PF00117 Glutamine amidotransferase class-I Abu_0922 PF00890 FAD binding domain Abu_0925 PF00155 Aminotransferase class I and II Abu_0926 PF01545 Cation efflux family Abu_0926 PF16916 Dimerisation domain of Zinc Transporter Abu_0927 PF01966 HD domain Abu_0927 PF00072 Response regulator receiver domain Abu_0928 PF00211 Adenylate and Guanylate cyclase catalytic domain Abu_0933 PF07690 Major Facilitator Superfamily Abu_0935 PF01891 Cobalt uptake substrate-specific transmembrane region Abu_0935 PF13190 PDGLE domain Abu_0938 PF00005 ABC transporter Abu_0939 PF08479 POTRA domain, ShlB-type Abu_0939 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Abu_0939 PF17287 POTRA domain Abu_0940 PF04829 Pre-toxin domain with VENN motif Abu_0940 PF05860 haemagglutination activity domain Abu_0940 PF15526 Novel toxin 21 Abu_0940 PF13332 Hemagglutinin repeat Abu_0940 PF13332 Hemagglutinin repeat Abu_0940 PF04829 Pre-toxin domain with VENN motif Abu_0940 PF15526 Novel toxin 21 Abu_0940 PF05860 haemagglutination activity domain Abu_0940 PF05594 Haemagluttinin repeat Abu_0940 PF05594 Haemagluttinin repeat Abu_0953 PF01594 AI-2E family transporter Abu_0958 PF17755 UvrA DNA-binding domain Abu_0958 PF17760 UvrA interaction domain Abu_0960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_0960 PF08447 PAS fold Abu_0963 PF00132 Bacterial transferase hexapeptide (six repeats) Abu_0963 PF06426 Serine acetyltransferase, N-terminal Abu_0964 PF17810 Arginine decarboxylase helical bundle domain Abu_0964 PF17944 Arginine decarboxylase C-terminal helical extension Abu_0964 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Abu_0965 PF13393 Histidyl-tRNA synthetase Abu_0965 PF03129 Anticodon binding domain Abu_0966 PF02223 Thymidylate kinase Abu_0967 PF01467 Cytidylyltransferase-like Abu_0968 PF02441 Flavoprotein Abu_0970 PF03948 Ribosomal protein L9, C-terminal domain Abu_0970 PF01281 Ribosomal protein L9, N-terminal domain Abu_0971 PF00227 Proteasome subunit Abu_0972 PF07724 AAA domain (Cdc48 subfamily) Abu_0972 PF10431 C-terminal, D2-small domain, of ClpB protein Abu_0974 PF01026 TatD related DNase Abu_0976 PF03330 Lytic transglycolase Abu_0976 PF05036 Sporulation related domain Abu_0977 PF00475 Imidazoleglycerol-phosphate dehydratase Abu_0981 PF01926 50S ribosome-binding GTPase Abu_0982 PF00583 Acetyltransferase (GNAT) family Abu_0986 PF01118 Semialdehyde dehydrogenase, NAD binding domain Abu_0987 PF00155 Aminotransferase class I and II Abu_0987 PF00392 Bacterial regulatory proteins, gntR family Abu_0991 PF00873 AcrB/AcrD/AcrF family Abu_0992 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Abu_0992 PF00529 HlyD membrane-fusion protein of T1SS Abu_0994 PF11849 Domain of unknown function (DUF3369) Abu_0995 PF00813 FliP family Abu_0996 PF03717 Penicillin-binding Protein dimerisation domain Abu_0996 PF00905 Penicillin binding protein transpeptidase domain Abu_1000 PF00005 ABC transporter Abu_1001 PF02390 Putative methyltransferase Abu_1002 PF00128 Alpha amylase, catalytic domain Abu_1002 PF02903 Alpha amylase, N-terminal ig-like domain Abu_1003 PF01479 S4 domain Abu_1003 PF00849 RNA pseudouridylate synthase Abu_1004 PF01098 Cell cycle protein Abu_1006 PF00202 Aminotransferase class-III Abu_1007 PF06865 Pyrimidine/purine nucleoside phosphorylase Abu_1011 PF00140 Sigma-70 factor, region 1.2 Abu_1011 PF04542 Sigma-70 region 2 Abu_1011 PF04539 Sigma-70 region 3 Abu_1011 PF04545 Sigma-70, region 4 Abu_1012 PF00694 Aconitase C-terminal domain Abu_1013 PF00180 Isocitrate/isopropylmalate dehydrogenase Abu_1016 PF00444 Ribosomal protein L36 Abu_1017 PF00416 Ribosomal protein S13/S18 Abu_1018 PF00411 Ribosomal protein S11 Abu_1019 PF00163 Ribosomal protein S4/S9 N-terminal domain Abu_1019 PF01479 S4 domain Abu_1020 PF01000 RNA polymerase Rpb3/RpoA insert domain Abu_1020 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Abu_1020 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Abu_1021 PF01196 Ribosomal protein L17 Abu_1022 PF01425 Amidase Abu_1023 PF00571 CBS domain Abu_1023 PF00478 IMP dehydrogenase / GMP reductase domain Abu_1027 PF00072 Response regulator receiver domain Abu_1027 PF00486 Transcriptional regulatory protein, C terminal Abu_1033 PF00226 DnaJ domain Abu_1033 PF01556 DnaJ C terminal domain Abu_1033 PF00684 DnaJ central domain Abu_1035 PF00933 Glycosyl hydrolase family 3 N terminal domain Abu_1036 PF17203 Single cache domain 3 Abu_1036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1036 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Abu_1037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1037 PF00512 His Kinase A (phospho-acceptor) domain Abu_1037 PF09456 RcsC Alpha-Beta-Loop (ABL) Abu_1037 PF00072 Response regulator receiver domain Abu_1039 PF00005 ABC transporter Abu_1042 PF08240 Alcohol dehydrogenase GroES-like domain Abu_1042 PF00107 Zinc-binding dehydrogenase Abu_1046 PF01638 HxlR-like helix-turn-helix Abu_1047 PF02525 Flavodoxin-like fold Abu_1049 PF00893 Small Multidrug Resistance protein Abu_1052 PF01161 Phosphatidylethanolamine-binding protein Abu_1053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Abu_1053 PF03466 LysR substrate binding domain Abu_1054 PF03601 Conserved hypothetical protein 698 Abu_1057 PF01638 HxlR-like helix-turn-helix Abu_1058 PF02525 Flavodoxin-like fold Abu_1060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Abu_1062 PF00881 Nitroreductase family Abu_1064 PF12848 ABC transporter Abu_1064 PF00005 ABC transporter Abu_1065 PF03061 Thioesterase superfamily Abu_1066 PF00672 HAMP domain Abu_1066 PF02203 Tar ligand binding domain homologue Abu_1066 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1067 PF00533 BRCA1 C Terminus (BRCT) domain Abu_1067 PF01653 NAD-dependent DNA ligase adenylation domain Abu_1067 PF03120 NAD-dependent DNA ligase OB-fold domain Abu_1067 PF12826 Helix-hairpin-helix motif Abu_1068 PF03738 Glutathionylspermidine synthase preATP-grasp Abu_1070 PF01966 HD domain Abu_1071 PF02661 Fic/DOC family Abu_1071 PF13784 Fic/DOC family N-terminal Abu_1072 PF02661 Fic/DOC family Abu_1072 PF13784 Fic/DOC family N-terminal Abu_1073 PF08501 Shikimate dehydrogenase substrate binding domain Abu_1075 PF02578 Multi-copper polyphenol oxidoreductase laccase Abu_1076 PF03949 Malic enzyme, NAD binding domain Abu_1076 PF00390 Malic enzyme, N-terminal domain Abu_1076 PF01515 Phosphate acetyl/butaryl transferase Abu_1077 PF00551 Formyl transferase Abu_1077 PF01842 ACT domain Abu_1078 PF00588 SpoU rRNA Methylase family Abu_1083 PF00072 Response regulator receiver domain Abu_1083 PF00486 Transcriptional regulatory protein, C terminal Abu_1085 PF01145 SPFH domain / Band 7 family Abu_1085 PF16200 C-terminal region of band_7 Abu_1089 PF01654 Cytochrome bd terminal oxidase subunit I Abu_1095 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Abu_1096 PF00849 RNA pseudouridylate synthase Abu_1096 PF01479 S4 domain Abu_1097 PF13419 Haloacid dehalogenase-like hydrolase Abu_1101 PF07715 TonB-dependent Receptor Plug Domain Abu_1101 PF00593 TonB dependent receptor Abu_1103 PF00005 ABC transporter Abu_1104 PF01032 FecCD transport family Abu_1105 PF00300 Histidine phosphatase superfamily (branch 1) Abu_1106 PF00664 ABC transporter transmembrane region Abu_1106 PF00005 ABC transporter Abu_1108 PF00072 Response regulator receiver domain Abu_1108 PF00486 Transcriptional regulatory protein, C terminal Abu_1109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1114 PF00990 Diguanylate cyclase, GGDEF domain Abu_1116 PF00271 Helicase conserved C-terminal domain Abu_1116 PF00270 DEAD/DEAH box helicase Abu_1117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1117 PF08448 PAS fold Abu_1117 PF08447 PAS fold Abu_1118 PF00072 Response regulator receiver domain Abu_1118 PF00486 Transcriptional regulatory protein, C terminal Abu_1119 PF05736 OprF membrane domain Abu_1119 PF00691 OmpA family Abu_1120 PF00005 ABC transporter Abu_1120 PF03412 Peptidase C39 family Abu_1120 PF00664 ABC transporter transmembrane region Abu_1122 PF00196 Bacterial regulatory proteins, luxR family Abu_1122 PF00072 Response regulator receiver domain Abu_1125 PF01761 3-dehydroquinate synthase Abu_1127 PF04055 Radical SAM superfamily Abu_1127 PF00919 Uncharacterized protein family UPF0004 Abu_1128 PF01434 Peptidase family M41 Abu_1128 PF17862 AAA+ lid domain Abu_1128 PF00004 ATPase family associated with various cellular activities (AAA) Abu_1128 PF06480 FtsH Extracellular Abu_1130 PF00994 Probable molybdopterin binding domain Abu_1131 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Abu_1140 PF00005 ABC transporter Abu_1140 PF12848 ABC transporter Abu_1143 PF00384 Molybdopterin oxidoreductase Abu_1143 PF18364 Molybdopterin oxidoreductase N-terminal domain Abu_1143 PF01568 Molydopterin dinucleotide binding domain Abu_1144 PF00561 alpha/beta hydrolase fold Abu_1145 PF16925 Tetracyclin repressor-like, C-terminal domain Abu_1145 PF00440 Bacterial regulatory proteins, tetR family Abu_1146 PF01713 Smr domain Abu_1146 PF00488 MutS domain V Abu_1147 PF03471 Transporter associated domain Abu_1147 PF01595 Cyclin M transmembrane N-terminal domain Abu_1147 PF00571 CBS domain Abu_1150 PF07687 Peptidase dimerisation domain Abu_1150 PF01546 Peptidase family M20/M25/M40 Abu_1151 PF00909 Ammonium Transporter Family Abu_1152 PF00543 Nitrogen regulatory protein P-II Abu_1154 PF02541 Ppx/GppA phosphatase family Abu_1156 PF00205 Thiamine pyrophosphate enzyme, central domain Abu_1156 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Abu_1156 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Abu_1157 PF10369 Small subunit of acetolactate synthase Abu_1158 PF00132 Bacterial transferase hexapeptide (six repeats) Abu_1158 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Abu_1159 PF17854 FtsK alpha domain Abu_1159 PF09397 Ftsk gamma domain Abu_1159 PF01580 FtsK/SpoIIIE family Abu_1160 PF00072 Response regulator receiver domain Abu_1160 PF00486 Transcriptional regulatory protein, C terminal Abu_1163 PF07568 Histidine kinase Abu_1163 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1163 PF12282 Signal transduction histidine kinase Abu_1166 PF00486 Transcriptional regulatory protein, C terminal Abu_1166 PF00072 Response regulator receiver domain Abu_1170 PF02810 SEC-C motif Abu_1171 PF00149 Calcineurin-like phosphoesterase Abu_1171 PF12320 Type 5 capsule protein repressor C-terminal domain Abu_1172 PF13086 AAA domain Abu_1172 PF13087 AAA domain Abu_1172 PF13195 Protein of unknown function (DUF4011) Abu_1174 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Abu_1175 PF01926 50S ribosome-binding GTPase Abu_1175 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Abu_1176 PF00916 Sulfate permease family Abu_1176 PF01740 STAS domain Abu_1179 PF02844 Phosphoribosylglycinamide synthetase, N domain Abu_1179 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Abu_1179 PF02843 Phosphoribosylglycinamide synthetase, C domain Abu_1181 PF04453 LPS transport system D Abu_1181 PF03968 OstA-like protein Abu_1183 PF00013 KH domain Abu_1183 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Abu_1183 PF01138 3' exoribonuclease family, domain 1 Abu_1183 PF03725 3' exoribonuclease family, domain 2 Abu_1183 PF00575 S1 RNA binding domain Abu_1184 PF00072 Response regulator receiver domain Abu_1185 PF02895 Signal transducing histidine kinase, homodimeric domain Abu_1185 PF01627 Hpt domain Abu_1185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1185 PF01584 CheW-like domain Abu_1185 PF09078 CheY binding Abu_1186 PF01739 CheR methyltransferase, SAM binding domain Abu_1186 PF03705 CheR methyltransferase, all-alpha domain Abu_1187 PF03975 CheD chemotactic sensory transduction Abu_1188 PF01339 CheB methylesterase Abu_1188 PF00072 Response regulator receiver domain Abu_1190 PF07690 Major Facilitator Superfamily Abu_1191 PF18644 Phage integrase SAM-like domain Abu_1191 PF00589 Phage integrase family Abu_1195 PF01432 Peptidase family M3 Abu_1196 PF17827 PrmC N-terminal domain Abu_1196 PF05175 Methyltransferase small domain Abu_1197 PF06969 HemN C-terminal domain Abu_1197 PF04055 Radical SAM superfamily Abu_1198 PF00293 NUDIX domain Abu_1199 PF00696 Amino acid kinase family Abu_1199 PF01842 ACT domain Abu_1199 PF13840 ACT domain Abu_1202 PF00809 Pterin binding enzyme Abu_1206 PF01593 Flavin containing amine oxidoreductase Abu_1207 PF08212 Lipocalin-like domain Abu_1209 PF00106 short chain dehydrogenase Abu_1210 PF01842 ACT domain Abu_1210 PF02153 Prephenate dehydrogenase Abu_1211 PF07244 Surface antigen variable number repeat Abu_1211 PF01103 Surface antigen Abu_1212 PF04055 Radical SAM superfamily Abu_1213 PF05193 Peptidase M16 inactive domain Abu_1214 PF00749 tRNA synthetases class I (E and Q), catalytic domain Abu_1219 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Abu_1221 PF00133 tRNA synthetases class I (I, L, M and V) Abu_1221 PF09334 tRNA synthetases class I (M) Abu_1221 PF01588 Putative tRNA binding domain Abu_1226 PF02436 Conserved carboxylase domain Abu_1226 PF00682 HMGL-like Abu_1227 PF01293 Phosphoenolpyruvate carboxykinase Abu_1228 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Abu_1228 PF00925 GTP cyclohydrolase II Abu_1232 PF02092 Glycyl-tRNA synthetase beta subunit Abu_1235 PF02069 Prokaryotic metallothionein Abu_1236 PF02527 rRNA small subunit methyltransferase G Abu_1237 PF00925 GTP cyclohydrolase II Abu_1238 PF00490 Delta-aminolevulinic acid dehydratase Abu_1239 PF13426 PAS domain Abu_1239 PF00072 Response regulator receiver domain Abu_1239 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1240 PF00072 Response regulator receiver domain Abu_1240 PF00486 Transcriptional regulatory protein, C terminal Abu_1243 PF03477 ATP cone domain Abu_1243 PF02867 Ribonucleotide reductase, barrel domain Abu_1243 PF00317 Ribonucleotide reductase, all-alpha domain Abu_1244 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Abu_1244 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Abu_1245 PF04055 Radical SAM superfamily Abu_1245 PF06969 HemN C-terminal domain Abu_1248 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Abu_1249 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Abu_1250 PF02540 NAD synthase Abu_1253 PF00226 DnaJ domain Abu_1253 PF05099 Tellurite resistance protein TerB Abu_1256 PF00902 Sec-independent protein translocase protein (TatC) Abu_1257 PF02547 Queuosine biosynthesis protein Abu_1258 PF00929 Exonuclease Abu_1262 PF12867 DinB superfamily Abu_1262 PF03781 Sulfatase-modifying factor enzyme 1 Abu_1266 PF13183 4Fe-4S dicluster domain Abu_1266 PF02665 Nitrate reductase gamma subunit Abu_1266 PF02754 Cysteine-rich domain Abu_1267 PF01790 Prolipoprotein diacylglyceryl transferase Abu_1270 PF01612 3'-5' exonuclease Abu_1270 PF00476 DNA polymerase family A Abu_1270 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Abu_1270 PF01367 5'-3' exonuclease, C-terminal SAM fold Abu_1272 PF02348 Cytidylyltransferase Abu_1273 PF00563 EAL domain Abu_1273 PF00990 Diguanylate cyclase, GGDEF domain Abu_1273 PF10442 FIST C domain Abu_1273 PF08495 FIST N domain Abu_1274 PF12399 Branched-chain amino acid ATP-binding cassette transporter Abu_1274 PF00005 ABC transporter Abu_1275 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Abu_1276 PF00591 Glycosyl transferase family, a/b domain Abu_1276 PF02885 Glycosyl transferase family, helical bundle domain Abu_1279 PF00764 Arginosuccinate synthase Abu_1280 PF00501 AMP-binding enzyme Abu_1280 PF13193 AMP-binding enzyme C-terminal domain Abu_1281 PF03062 MBOAT, membrane-bound O-acyltransferase family Abu_1284 PF00550 Phosphopantetheine attachment site Abu_1285 PF00132 Bacterial transferase hexapeptide (six repeats) Abu_1286 PF00916 Sulfate permease family Abu_1286 PF01740 STAS domain Abu_1288 PF02080 TrkA-C domain Abu_1288 PF02254 TrkA-N domain Abu_1289 PF02386 Cation transport protein Abu_1290 PF00072 Response regulator receiver domain Abu_1290 PF00486 Transcriptional regulatory protein, C terminal Abu_1291 PF13493 Domain of unknown function (DUF4118) Abu_1291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1291 PF00512 His Kinase A (phospho-acceptor) domain Abu_1291 PF02702 Osmosensitive K+ channel His kinase sensor domain Abu_1293 PF02132 RecR protein Abu_1293 PF13662 Toprim domain Abu_1294 PF00226 DnaJ domain Abu_1294 PF01556 DnaJ C terminal domain Abu_1294 PF00684 DnaJ central domain Abu_1295 PF00291 Pyridoxal-phosphate dependent enzyme Abu_1299 PF00753 Metallo-beta-lactamase superfamily Abu_1301 PF00990 Diguanylate cyclase, GGDEF domain Abu_1302 PF08003 Protein of unknown function (DUF1698) Abu_1304 PF01578 Cytochrome C assembly protein Abu_1304 PF05140 ResB-like family Abu_1305 PF07687 Peptidase dimerisation domain Abu_1305 PF01546 Peptidase family M20/M25/M40 Abu_1307 PF00672 HAMP domain Abu_1307 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1307 PF02203 Tar ligand binding domain homologue Abu_1310 PF07516 SecA Wing and Scaffold domain Abu_1310 PF01043 SecA preprotein cross-linking domain Abu_1310 PF07517 SecA DEAD-like domain Abu_1310 PF02810 SEC-C motif Abu_1310 PF00271 Helicase conserved C-terminal domain Abu_1311 PF02687 FtsX-like permease family Abu_1311 PF12704 MacB-like periplasmic core domain Abu_1313 PF02618 YceG-like family Abu_1314 PF03971 Monomeric isocitrate dehydrogenase Abu_1315 PF00056 lactate/malate dehydrogenase, NAD binding domain Abu_1315 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Abu_1320 PF01795 MraW methylase family Abu_1322 PF00216 Bacterial DNA-binding protein Abu_1324 PF13356 Arm DNA-binding domain Abu_1324 PF00589 Phage integrase family Abu_1331 PF00271 Helicase conserved C-terminal domain Abu_1353 PF02082 Transcriptional regulator Abu_1354 PF00115 Cytochrome C and Quinol oxidase polypeptide I Abu_1356 PF01266 FAD dependent oxidoreductase Abu_1356 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Abu_1358 PF00072 Response regulator receiver domain Abu_1360 PF00512 His Kinase A (phospho-acceptor) domain Abu_1360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1361 PF00226 DnaJ domain Abu_1361 PF01556 DnaJ C terminal domain Abu_1362 PF13411 MerR HTH family regulatory protein Abu_1363 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Abu_1364 PF00005 ABC transporter Abu_1367 PF03741 Integral membrane protein TerC family Abu_1368 PF05525 Branched-chain amino acid transport protein Abu_1372 PF02142 MGS-like domain Abu_1372 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Abu_1372 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Abu_1374 PF06965 Na+/H+ antiporter 1 Abu_1376 PF00561 alpha/beta hydrolase fold Abu_1377 PF07715 TonB-dependent Receptor Plug Domain Abu_1377 PF00593 TonB dependent receptor Abu_1379 PF12327 FtsZ family, C-terminal domain Abu_1379 PF00091 Tubulin/FtsZ family, GTPase domain Abu_1380 PF02491 SHS2 domain inserted in FTSA Abu_1384 PF03960 ArsC family Abu_1390 PF00005 ABC transporter Abu_1390 PF16326 ABC transporter C-terminal domain Abu_1390 PF12848 ABC transporter Abu_1392 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle Abu_1392 PF14602 Hexapeptide repeat of succinyl-transferase Abu_1393 PF13419 Haloacid dehalogenase-like hydrolase Abu_1395 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Abu_1395 PF18074 Primosomal protein N C-terminal domain Abu_1395 PF00270 DEAD/DEAH box helicase Abu_1395 PF00271 Helicase conserved C-terminal domain Abu_1395 PF17764 3′ DNA-binding domain (3′BD) Abu_1400 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Abu_1401 PF00586 AIR synthase related protein, N-terminal domain Abu_1401 PF02769 AIR synthase related protein, C-terminal domain Abu_1403 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Abu_1403 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Abu_1404 PF07728 AAA domain (dynein-related subfamily) Abu_1404 PF12102 Domain of unknown function (DUF3578) Abu_1406 PF01924 Hydrogenase formation hypA family Abu_1407 PF01455 HupF/HypC family Abu_1408 PF02492 CobW/HypB/UreG, nucleotide-binding domain Abu_1410 PF00672 HAMP domain Abu_1410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1410 PF02203 Tar ligand binding domain homologue Abu_1413 PF05661 Protein of unknown function (DUF808) Abu_1417 PF12823 Domain of unknown function (DUF3817) Abu_1419 PF02568 Thiamine biosynthesis protein (ThiI) Abu_1419 PF02926 THUMP domain Abu_1423 PF17788 HypF Kae1-like domain Abu_1423 PF01300 Telomere recombination Abu_1423 PF07503 HypF finger Abu_1423 PF00708 Acylphosphatase Abu_1425 PF01750 Hydrogenase maturation protease Abu_1426 PF01292 Prokaryotic cytochrome b561 Abu_1427 PF00374 Nickel-dependent hydrogenase Abu_1428 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Abu_1428 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Abu_1428 PF10518 TAT (twin-arginine translocation) pathway signal sequence Abu_1432 PF01750 Hydrogenase maturation protease Abu_1433 PF01292 Prokaryotic cytochrome b561 Abu_1434 PF00374 Nickel-dependent hydrogenase Abu_1435 PF10518 TAT (twin-arginine translocation) pathway signal sequence Abu_1435 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Abu_1435 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Abu_1437 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Abu_1437 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Abu_1439 PF11791 Aconitate B N-terminal domain Abu_1439 PF06434 Aconitate hydratase 2 N-terminus Abu_1439 PF00330 Aconitase family (aconitate hydratase) Abu_1441 PF00563 EAL domain Abu_1441 PF01590 GAF domain Abu_1441 PF00990 Diguanylate cyclase, GGDEF domain Abu_1441 PF00360 Phytochrome region Abu_1442 PF01709 Transcriptional regulator Abu_1443 PF04333 MlaA lipoprotein Abu_1446 PF03641 Possible lysine decarboxylase Abu_1447 PF13419 Haloacid dehalogenase-like hydrolase Abu_1448 PF08534 Redoxin Abu_1450 PF02600 Disulfide bond formation protein DsbB Abu_1454 PF07715 TonB-dependent Receptor Plug Domain Abu_1454 PF07660 Secretin and TonB N terminus short domain Abu_1454 PF00593 TonB dependent receptor Abu_1455 PF00990 Diguanylate cyclase, GGDEF domain Abu_1457 PF02028 BCCT, betaine/carnitine/choline family transporter Abu_1458 PF02254 TrkA-N domain Abu_1458 PF00999 Sodium/hydrogen exchanger family Abu_1460 PF00464 Serine hydroxymethyltransferase Abu_1461 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Abu_1461 PF12833 Helix-turn-helix domain Abu_1461 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Abu_1461 PF02805 Metal binding domain of Ada Abu_1467 PF03594 Benzoate membrane transport protein Abu_1468 PF00202 Aminotransferase class-III Abu_1469 PF03473 MOSC domain Abu_1470 PF04055 Radical SAM superfamily Abu_1471 PF10437 Bacterial lipoate protein ligase C-terminus Abu_1471 PF03099 Biotin/lipoate A/B protein ligase family Abu_1472 PF00456 Transketolase, thiamine diphosphate binding domain Abu_1472 PF17831 Pyruvate dehydrogenase E1 component middle domain Abu_1473 PF00364 Biotin-requiring enzyme Abu_1473 PF02817 e3 binding domain Abu_1473 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Abu_1474 PF07992 Pyridine nucleotide-disulphide oxidoreductase Abu_1474 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Abu_1475 PF07685 CobB/CobQ-like glutamine amidotransferase domain Abu_1476 PF07715 TonB-dependent Receptor Plug Domain Abu_1476 PF00593 TonB dependent receptor Abu_1477 PF01263 Aldose 1-epimerase Abu_1478 PF00905 Penicillin binding protein transpeptidase domain Abu_1479 PF00270 DEAD/DEAH box helicase Abu_1479 PF00271 Helicase conserved C-terminal domain Abu_1481 PF00145 C-5 cytosine-specific DNA methylase Abu_1481 PF01381 Helix-turn-helix Abu_1484 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Abu_1484 PF18381 YcaO cyclodehydratase C-terminal domain Abu_1487 PF02203 Tar ligand binding domain homologue Abu_1487 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1487 PF00672 HAMP domain Abu_1488 PF00075 RNase H Abu_1489 PF00682 HMGL-like Abu_1492 PF11798 IMS family HHH motif Abu_1492 PF00817 impB/mucB/samB family Abu_1492 PF11799 impB/mucB/samB family C-terminal domain Abu_1493 PF00994 Probable molybdopterin binding domain Abu_1493 PF03453 MoeA N-terminal region (domain I and II) Abu_1493 PF03454 MoeA C-terminal region (domain IV) Abu_1495 PF02634 FdhD/NarQ family Abu_1497 PF13247 4Fe-4S dicluster domain Abu_1503 PF00512 His Kinase A (phospho-acceptor) domain Abu_1503 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1508 PF01841 Transglutaminase-like superfamily Abu_1510 PF13247 4Fe-4S dicluster domain Abu_1511 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Abu_1511 PF00384 Molybdopterin oxidoreductase Abu_1511 PF01568 Molydopterin dinucleotide binding domain Abu_1513 PF00586 AIR synthase related protein, N-terminal domain Abu_1513 PF02769 AIR synthase related protein, C-terminal domain Abu_1524 PF03841 L-seryl-tRNA selenium transferase Abu_1525 PF03144 Elongation factor Tu domain 2 Abu_1525 PF00009 Elongation factor Tu GTP binding domain Abu_1525 PF09107 Elongation factor SelB, winged helix Abu_1525 PF09106 Elongation factor SelB, winged helix Abu_1525 PF09105 Elongation factor SelB, winged helix Abu_1536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1536 PF08447 PAS fold Abu_1536 PF08448 PAS fold Abu_1537 PF03358 NADPH-dependent FMN reductase Abu_1539 PF01966 HD domain Abu_1540 PF00563 EAL domain Abu_1540 PF08448 PAS fold Abu_1540 PF00990 Diguanylate cyclase, GGDEF domain Abu_1541 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Abu_1541 PF01243 Pyridoxamine 5'-phosphate oxidase Abu_1542 PF00990 Diguanylate cyclase, GGDEF domain Abu_1542 PF03707 Bacterial signalling protein N terminal repeat Abu_1542 PF00563 EAL domain Abu_1543 PF03880 DbpA RNA binding domain Abu_1543 PF00270 DEAD/DEAH box helicase Abu_1543 PF00271 Helicase conserved C-terminal domain Abu_1547 PF00183 Hsp90 protein Abu_1548 PF00141 Peroxidase Abu_1554 PF00563 EAL domain Abu_1554 PF00990 Diguanylate cyclase, GGDEF domain Abu_1554 PF08448 PAS fold Abu_1557 PF04073 Aminoacyl-tRNA editing domain Abu_1559 PF08713 DNA alkylation repair enzyme Abu_1562 PF01965 DJ-1/PfpI family Abu_1563 PF05175 Methyltransferase small domain Abu_1563 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus Abu_1564 PF07715 TonB-dependent Receptor Plug Domain Abu_1564 PF07660 Secretin and TonB N terminus short domain Abu_1564 PF00593 TonB dependent receptor Abu_1568 PF04542 Sigma-70 region 2 Abu_1568 PF08281 Sigma-70, region 4 Abu_1569 PF00491 Arginase family Abu_1570 PF00682 HMGL-like Abu_1570 PF08502 LeuA allosteric (dimerisation) domain Abu_1571 PF12833 Helix-turn-helix domain Abu_1572 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Abu_1574 PF12833 Helix-turn-helix domain Abu_1575 PF07715 TonB-dependent Receptor Plug Domain Abu_1575 PF00593 TonB dependent receptor Abu_1576 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Abu_1576 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Abu_1577 PF00924 Mechanosensitive ion channel Abu_1578 PF01368 DHH family Abu_1578 PF02833 DHHA2 domain Abu_1581 PF00206 Lyase Abu_1581 PF10415 Fumarase C C-terminus Abu_1582 PF00486 Transcriptional regulatory protein, C terminal Abu_1582 PF00072 Response regulator receiver domain Abu_1583 PF00512 His Kinase A (phospho-acceptor) domain Abu_1583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1584 PF01235 Sodium:alanine symporter family Abu_1585 PF01048 Phosphorylase superfamily Abu_1586 PF00698 Acyl transferase domain Abu_1587 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Abu_1590 PF04052 TolB amino-terminal domain Abu_1592 PF02472 Biopolymer transport protein ExbD/TolR Abu_1593 PF01618 MotA/TolQ/ExbB proton channel family Abu_1594 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Abu_1595 PF02874 ATP synthase alpha/beta family, beta-barrel domain Abu_1595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Abu_1596 PF00231 ATP synthase Abu_1597 PF02874 ATP synthase alpha/beta family, beta-barrel domain Abu_1597 PF00306 ATP synthase alpha/beta chain, C terminal domain Abu_1597 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Abu_1598 PF00213 ATP synthase delta (OSCP) subunit Abu_1599 PF00430 ATP synthase B/B' CF(0) Abu_1601 PF02195 ParB-like nuclease domain Abu_1601 PF17762 HTH domain found in ParB protein Abu_1602 PF13614 AAA domain Abu_1606 PF02911 Formyl transferase, C-terminal domain Abu_1606 PF00551 Formyl transferase Abu_1607 PF00696 Amino acid kinase family Abu_1608 PF01018 GTP1/OBG Abu_1608 PF01926 50S ribosome-binding GTPase Abu_1609 PF01016 Ribosomal L27 protein Abu_1610 PF00829 Ribosomal prokaryotic L21 protein Abu_1611 PF01807 CHC2 zinc finger Abu_1611 PF08275 DNA primase catalytic core, N-terminal domain Abu_1611 PF16730 DnaG-primase C-terminal, helicase-binding domain Abu_1611 PF13662 Toprim domain Abu_1613 PF00035 Double-stranded RNA binding motif Abu_1613 PF14622 Ribonuclease-III-like Abu_1614 PF01264 Chorismate synthase Abu_1616 PF01435 Peptidase family M48 Abu_1618 PF00300 Histidine phosphatase superfamily (branch 1) Abu_1620 PF12631 MnmE helical domain Abu_1620 PF01926 50S ribosome-binding GTPase Abu_1620 PF10396 GTP-binding protein TrmE N-terminus Abu_1622 PF02096 60Kd inner membrane protein Abu_1622 PF14849 YidC periplasmic domain Abu_1623 PF01809 Putative membrane protein insertion efficiency factor Abu_1625 PF00468 Ribosomal protein L34 Abu_1626 PF00004 ATPase family associated with various cellular activities (AAA) Abu_1626 PF07724 AAA domain (Cdc48 subfamily) Abu_1626 PF17871 AAA lid domain Abu_1626 PF02861 Clp amino terminal domain, pathogenicity island component Abu_1626 PF10431 C-terminal, D2-small domain, of ClpB protein Abu_1627 PF01351 Ribonuclease HII Abu_1629 PF03976 Polyphosphate kinase 2 (PPK2) Abu_1631 PF01625 Peptide methionine sulfoxide reductase Abu_1632 PF01641 SelR domain Abu_1633 PF01557 Fumarylacetoacetate (FAA) hydrolase family Abu_1636 PF06968 Biotin and Thiamin Synthesis associated domain Abu_1636 PF04055 Radical SAM superfamily Abu_1636 PF00202 Aminotransferase class-III Abu_1637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1637 PF08447 PAS fold Abu_1637 PF08448 PAS fold Abu_1638 PF02142 MGS-like domain Abu_1638 PF01808 AICARFT/IMPCHase bienzyme Abu_1639 PF00586 AIR synthase related protein, N-terminal domain Abu_1639 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Abu_1639 PF02769 AIR synthase related protein, C-terminal domain Abu_1641 PF01476 LysM domain Abu_1641 PF08525 Opacity-associated protein A N-terminal motif Abu_1641 PF01551 Peptidase family M23 Abu_1642 PF01227 GTP cyclohydrolase I Abu_1643 PF01544 CorA-like Mg2+ transporter protein Abu_1644 PF00482 Type II secretion system (T2SS), protein F Abu_1645 PF00437 Type II/IV secretion system protein Abu_1650 PF02086 D12 class N6 adenine-specific DNA methyltransferase Abu_1696 PF07650 KH domain Abu_1696 PF01926 50S ribosome-binding GTPase Abu_1698 PF01078 Magnesium chelatase, subunit ChlI Abu_1698 PF13335 Magnesium chelatase, subunit ChlI C-terminal Abu_1700 PF01327 Polypeptide deformylase Abu_1701 PF00574 Clp protease Abu_1702 PF05698 Bacterial trigger factor protein (TF) C-terminus Abu_1702 PF05697 Bacterial trigger factor protein (TF) Abu_1702 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Abu_1703 PF03976 Polyphosphate kinase 2 (PPK2) Abu_1704 PF03976 Polyphosphate kinase 2 (PPK2) Abu_1705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Abu_1706 PF16653 Saccharopine dehydrogenase C-terminal domain Abu_1706 PF03435 Saccharopine dehydrogenase NADP binding domain Abu_1707 PF02899 Phage integrase, N-terminal SAM-like domain Abu_1707 PF00589 Phage integrase family Abu_1715 PF06470 SMC proteins Flexible Hinge Domain Abu_1715 PF02463 RecF/RecN/SMC N terminal domain Abu_1717 PF12161 HsdM N-terminal domain Abu_1717 PF02384 N-6 DNA Methylase Abu_1723 PF01053 Cys/Met metabolism PLP-dependent enzyme Abu_1724 PF01053 Cys/Met metabolism PLP-dependent enzyme Abu_1725 PF00486 Transcriptional regulatory protein, C terminal Abu_1725 PF00072 Response regulator receiver domain Abu_1726 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1726 PF00672 HAMP domain Abu_1726 PF02203 Tar ligand binding domain homologue Abu_1728 PF11849 Domain of unknown function (DUF3369) Abu_1729 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1729 PF02203 Tar ligand binding domain homologue Abu_1729 PF00672 HAMP domain Abu_1730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1730 PF00672 HAMP domain Abu_1730 PF18698 Histidine kinase sensor domain Abu_1730 PF00512 His Kinase A (phospho-acceptor) domain Abu_1734 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Abu_1736 PF00486 Transcriptional regulatory protein, C terminal Abu_1736 PF00072 Response regulator receiver domain Abu_1738 PF03824 High-affinity nickel-transport protein Abu_1741 PF06965 Na+/H+ antiporter 1 Abu_1742 PF03150 Di-haem cytochrome c peroxidase Abu_1743 PF04116 Fatty acid hydroxylase superfamily Abu_1748 PF00137 ATP synthase subunit C Abu_1749 PF00672 HAMP domain Abu_1749 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1749 PF02203 Tar ligand binding domain homologue Abu_1751 PF01594 AI-2E family transporter Abu_1756 PF08543 Phosphomethylpyrimidine kinase Abu_1757 PF00171 Aldehyde dehydrogenase family Abu_1760 PF12801 4Fe-4S binding domain Abu_1760 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Abu_1760 PF13746 4Fe-4S dicluster domain Abu_1761 PF00512 His Kinase A (phospho-acceptor) domain Abu_1761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1762 PF12833 Helix-turn-helix domain Abu_1762 PF00072 Response regulator receiver domain Abu_1764 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Abu_1764 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Abu_1764 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Abu_1764 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Abu_1765 PF00795 Carbon-nitrogen hydrolase Abu_1769 PF00258 Flavodoxin Abu_1770 PF01475 Ferric uptake regulator family Abu_1772 PF04377 Arginine-tRNA-protein transferase, C terminus Abu_1772 PF04376 Arginine-tRNA-protein transferase, N terminus Abu_1773 PF00290 Tryptophan synthase alpha chain Abu_1774 PF00654 Voltage gated chloride channel Abu_1775 PF02548 Ketopantoate hydroxymethyltransferase Abu_1776 PF05496 Holliday junction DNA helicase RuvB P-loop domain Abu_1776 PF17864 RuvB AAA lid domain Abu_1776 PF05491 RuvB C-terminal winged helix domain Abu_1777 PF01594 AI-2E family transporter Abu_1785 PF04055 Radical SAM superfamily Abu_1786 PF01208 Uroporphyrinogen decarboxylase (URO-D) Abu_1788 PF01118 Semialdehyde dehydrogenase, NAD binding domain Abu_1788 PF02774 Semialdehyde dehydrogenase, dimerisation domain Abu_1789 PF03989 DNA gyrase C-terminal domain, beta-propeller Abu_1789 PF00521 DNA gyrase/topoisomerase IV, subunit A Abu_1791 PF01960 ArgJ family Abu_1793 PF00830 Ribosomal L28 family Abu_1796 PF01370 NAD dependent epimerase/dehydratase family Abu_1797 PF01467 Cytidylyltransferase-like Abu_1797 PF00294 pfkB family carbohydrate kinase Abu_1798 PF13580 SIS domain Abu_1799 PF00884 Sulfatase Abu_1800 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Abu_1802 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Abu_1804 PF00884 Sulfatase Abu_1807 PF03062 MBOAT, membrane-bound O-acyltransferase family Abu_1808 PF00534 Glycosyl transferases group 1 Abu_1808 PF13439 Glycosyltransferase Family 4 Abu_1809 PF00535 Glycosyl transferase family 2 Abu_1810 PF13439 Glycosyltransferase Family 4 Abu_1810 PF00534 Glycosyl transferases group 1 Abu_1811 PF00535 Glycosyl transferase family 2 Abu_1811 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 Abu_1815 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Abu_1816 PF16363 GDP-mannose 4,6 dehydratase Abu_1817 PF00483 Nucleotidyl transferase Abu_1819 PF01219 Prokaryotic diacylglycerol kinase Abu_1822 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Abu_1824 PF00037 4Fe-4S binding domain Abu_1826 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Abu_1826 PF07992 Pyridine nucleotide-disulphide oxidoreductase Abu_1827 PF04898 Glutamate synthase central domain Abu_1827 PF01645 Conserved region in glutamate synthase Abu_1827 PF01493 GXGXG motif Abu_1827 PF00310 Glutamine amidotransferases class-II Abu_1830 PF00672 HAMP domain Abu_1830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1830 PF02203 Tar ligand binding domain homologue Abu_1831 PF00672 HAMP domain Abu_1831 PF02203 Tar ligand binding domain homologue Abu_1831 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1833 PF03958 Bacterial type II/III secretion system short domain Abu_1833 PF00263 Bacterial type II and III secretion system protein Abu_1834 PF09186 Domain of unknown function (DUF1949) Abu_1834 PF01205 Uncharacterized protein family UPF0029 Abu_1835 PF01728 FtsJ-like methyltransferase Abu_1835 PF01479 S4 domain Abu_1836 PF01687 Riboflavin kinase Abu_1836 PF06574 FAD synthetase Abu_1837 PF13649 Methyltransferase domain Abu_1838 PF00578 AhpC/TSA family Abu_1840 PF02913 FAD linked oxidases, C-terminal domain Abu_1840 PF01565 FAD binding domain Abu_1841 PF03631 Virulence factor BrkB Abu_1843 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Abu_1845 PF00793 DAHP synthetase I family Abu_1846 PF00885 6,7-dimethyl-8-ribityllumazine synthase Abu_1847 PF01029 NusB family Abu_1848 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Abu_1851 PF00005 ABC transporter Abu_1853 PF04023 FeoA domain Abu_1854 PF04023 FeoA domain Abu_1854 PF07664 Ferrous iron transport protein B C terminus Abu_1854 PF17910 FeoB cytosolic helical domain Abu_1854 PF02421 Ferrous iron transport protein B Abu_1854 PF07670 Nucleoside recognition Abu_1859 PF00403 Heavy-metal-associated domain Abu_1860 PF01022 Bacterial regulatory protein, arsR family Abu_1861 PF00593 TonB dependent receptor Abu_1861 PF07715 TonB-dependent Receptor Plug Domain Abu_1863 PF00873 AcrB/AcrD/AcrF family Abu_1866 PF00313 'Cold-shock' DNA-binding domain Abu_1868 PF00072 Response regulator receiver domain Abu_1868 PF12833 Helix-turn-helix domain Abu_1869 PF00512 His Kinase A (phospho-acceptor) domain Abu_1869 PF00989 PAS fold Abu_1869 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_1873 PF01051 Initiator Replication protein Abu_1879 PF10417 C-terminal domain of 1-Cys peroxiredoxin Abu_1879 PF00578 AhpC/TSA family Abu_1880 PF00085 Thioredoxin Abu_1883 PF05000 RNA polymerase Rpb1, domain 4 Abu_1883 PF04997 RNA polymerase Rpb1, domain 1 Abu_1883 PF00623 RNA polymerase Rpb1, domain 2 Abu_1883 PF04983 RNA polymerase Rpb1, domain 3 Abu_1883 PF04998 RNA polymerase Rpb1, domain 5 Abu_1884 PF04561 RNA polymerase Rpb2, domain 2 Abu_1884 PF04565 RNA polymerase Rpb2, domain 3 Abu_1884 PF10385 RNA polymerase beta subunit external 1 domain Abu_1884 PF04560 RNA polymerase Rpb2, domain 7 Abu_1884 PF04563 RNA polymerase beta subunit Abu_1884 PF00562 RNA polymerase Rpb2, domain 6 Abu_1885 PF00542 Ribosomal protein L7/L12 C-terminal domain Abu_1885 PF16320 Ribosomal protein L7/L12 dimerisation domain Abu_1886 PF00466 Ribosomal protein L10 Abu_1887 PF00687 Ribosomal protein L1p/L10e family Abu_1888 PF00298 Ribosomal protein L11, RNA binding domain Abu_1888 PF03946 Ribosomal protein L11, N-terminal domain Abu_1889 PF02357 Transcription termination factor nusG Abu_1892 PF00471 Ribosomal protein L33 Abu_1893 PF00009 Elongation factor Tu GTP binding domain Abu_1893 PF03144 Elongation factor Tu domain 2 Abu_1893 PF03143 Elongation factor Tu C-terminal domain Abu_1898 PF08245 Mur ligase middle domain Abu_1899 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Abu_1899 PF00953 Glycosyl transferase family 4 Abu_1900 PF01676 Metalloenzyme superfamily Abu_1900 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Abu_1901 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Abu_1901 PF00005 ABC transporter Abu_1902 PF00905 Penicillin binding protein transpeptidase domain Abu_1902 PF00912 Transglycosylase Abu_1903 PF00120 Glutamine synthetase, catalytic domain Abu_1903 PF03951 Glutamine synthetase, beta-Grasp domain Abu_1905 PF02391 MoaE protein Abu_1907 PF02621 Menaquinone biosynthesis Abu_1908 PF02673 Bacitracin resistance protein BacA Abu_1909 PF04101 Glycosyltransferase family 28 C-terminal domain Abu_1909 PF03033 Glycosyltransferase family 28 N-terminal domain Abu_1910 PF01098 Cell cycle protein Abu_1911 PF00905 Penicillin binding protein transpeptidase domain Abu_1912 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Abu_1920 PF10431 C-terminal, D2-small domain, of ClpB protein Abu_1920 PF02861 Clp amino terminal domain, pathogenicity island component Abu_1920 PF00004 ATPase family associated with various cellular activities (AAA) Abu_1920 PF07724 AAA domain (Cdc48 subfamily) Abu_1920 PF17871 AAA lid domain Abu_1921 PF02617 ATP-dependent Clp protease adaptor protein ClpS Abu_1925 PF00501 AMP-binding enzyme Abu_1925 PF13193 AMP-binding enzyme C-terminal domain Abu_1926 PF01575 MaoC like domain Abu_1930 PF02203 Tar ligand binding domain homologue Abu_1930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1930 PF00672 HAMP domain Abu_1931 PF02040 Arsenical pump membrane protein Abu_1935 PF01451 Low molecular weight phosphotyrosine protein phosphatase Abu_1936 PF01613 Flavin reductase like domain Abu_1938 PF00771 FHIPEP family Abu_1939 PF00700 Bacterial flagellin C-terminal helical region Abu_1939 PF00669 Bacterial flagellin N-terminal helical region Abu_1940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Abu_1940 PF18269 T3SS EscN ATPase C-terminal domain Abu_1942 PF01312 FlhB HrpN YscU SpaS Family Abu_1945 PF00460 Flagella basal body rod protein Abu_1945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Abu_1946 PF02049 Flagellar hook-basal body complex protein FliE Abu_1948 PF10609 NUBPL iron-transfer P-loop NTPase Abu_1949 PF00448 SRP54-type protein, GTPase domain Abu_1953 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Abu_1957 PF07559 Flagellar basal body protein FlaE Abu_1957 PF07196 Flagellin hook IN motif Abu_1957 PF00460 Flagella basal body rod protein Abu_1957 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Abu_1958 PF00460 Flagella basal body rod protein Abu_1958 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Abu_1960 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Abu_1962 PF01706 FliG C-terminal domain Abu_1962 PF14841 FliG middle domain Abu_1962 PF14842 FliG N-terminal domain Abu_1963 PF01514 Secretory protein of YscJ/FliF family Abu_1963 PF08345 Flagellar M-ring protein C-terminal Abu_1964 PF00460 Flagella basal body rod protein Abu_1965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Abu_1965 PF00460 Flagella basal body rod protein Abu_1967 PF00072 Response regulator receiver domain Abu_1968 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Abu_1968 PF00460 Flagella basal body rod protein Abu_1971 PF01782 RimM N-terminal domain Abu_1973 PF00886 Ribosomal protein S16 Abu_1974 PF02881 SRP54-type protein, helical bundle domain Abu_1974 PF02978 Signal peptide binding domain Abu_1974 PF00448 SRP54-type protein, GTPase domain Abu_1975 PF00849 RNA pseudouridylate synthase Abu_1976 PF00534 Glycosyl transferases group 1 Abu_1976 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Abu_1978 PF01784 NIF3 (NGG1p interacting factor 3) Abu_1979 PF02091 Glycyl-tRNA synthetase alpha subunit Abu_1981 PF00731 AIR carboxylase Abu_1983 PF01136 Peptidase family U32 Abu_1984 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_1984 PF17200 Single Cache domain 2 Abu_1984 PF00672 HAMP domain Abu_1985 PF13476 AAA domain Abu_1986 PF01513 ATP-NAD kinase Abu_1987 PF00679 Elongation factor G C-terminus Abu_1987 PF14492 Elongation Factor G, domain II Abu_1987 PF03764 Elongation factor G, domain IV Abu_1987 PF00009 Elongation factor Tu GTP binding domain Abu_1987 PF03144 Elongation factor Tu domain 2 Abu_1988 PF00177 Ribosomal protein S7p/S5e Abu_1989 PF00164 Ribosomal protein S12/S23 Abu_1991 PF07690 Major Facilitator Superfamily Abu_1992 PF00593 TonB dependent receptor Abu_1992 PF07715 TonB-dependent Receptor Plug Domain Abu_1995 PF00005 ABC transporter Abu_1996 PF00528 Binding-protein-dependent transport system inner membrane component Abu_2004 PF00117 Glutamine amidotransferase class-I Abu_2005 PF13416 Bacterial extracellular solute-binding protein Abu_2006 PF00528 Binding-protein-dependent transport system inner membrane component Abu_2007 PF00005 ABC transporter Abu_2007 PF08402 TOBE domain Abu_2009 PF07715 TonB-dependent Receptor Plug Domain Abu_2009 PF00593 TonB dependent receptor Abu_2013 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Abu_2013 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Abu_2017 PF16921 Tex protein YqgF-like domain Abu_2017 PF17674 HHH domain Abu_2017 PF00575 S1 RNA binding domain Abu_2017 PF09371 Tex-like protein N-terminal domain Abu_2019 PF01042 Endoribonuclease L-PSP Abu_2022 PF00155 Aminotransferase class I and II Abu_2024 PF09335 SNARE associated Golgi protein Abu_2025 PF01245 Ribosomal protein L19 Abu_2026 PF01746 tRNA (Guanine-1)-methyltransferase Abu_2028 PF08267 Cobalamin-independent synthase, N-terminal domain Abu_2028 PF01717 Cobalamin-independent synthase, Catalytic domain Abu_2029 PF13291 ACT domain Abu_2029 PF00291 Pyridoxal-phosphate dependent enzyme Abu_2030 PF00119 ATP synthase A chain Abu_2032 PF05538 Campylobacter major outer membrane protein Abu_2034 PF02660 Glycerol-3-phosphate acyltransferase Abu_2035 PF02445 Quinolinate synthetase A protein Abu_2036 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Abu_2036 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Abu_2039 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Abu_2041 PF08544 GHMP kinases C terminal Abu_2041 PF00288 GHMP kinases N terminal domain Abu_2043 PF00009 Elongation factor Tu GTP binding domain Abu_2043 PF04760 Translation initiation factor IF-2, N-terminal region Abu_2043 PF11987 Translation-initiation factor 2 Abu_2044 PF02033 Ribosome-binding factor A Abu_2045 PF02576 RimP N-terminal domain Abu_2046 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Abu_2046 PF01872 RibD C-terminal domain Abu_2047 PF01132 Elongation factor P (EF-P) OB domain Abu_2047 PF08207 Elongation factor P (EF-P) KOW-like domain Abu_2047 PF09285 Elongation factor P, C-terminal Abu_2048 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Abu_2048 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Abu_2048 PF01842 ACT domain Abu_2049 PF00575 S1 RNA binding domain Abu_2050 PF02401 LytB protein Abu_2051 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Abu_2052 PF03484 tRNA synthetase B5 domain Abu_2052 PF03147 Ferredoxin-fold anticodon binding domain Abu_2052 PF01588 Putative tRNA binding domain Abu_2052 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Abu_2053 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Abu_2053 PF01409 tRNA synthetases class II core domain (F) Abu_2054 PF01230 HIT domain Abu_2055 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Abu_2056 PF00109 Beta-ketoacyl synthase, N-terminal domain Abu_2056 PF02801 Beta-ketoacyl synthase, C-terminal domain Abu_2057 PF00550 Phosphopantetheine attachment site Abu_2059 PF04055 Radical SAM superfamily Abu_2061 PF06508 Queuosine biosynthesis protein QueC Abu_2063 PF04452 RNA methyltransferase Abu_2065 PF00032 Cytochrome b(C-terminal)/b6/petD Abu_2065 PF00033 Cytochrome b/b6/petB Abu_2066 PF00355 Rieske [2Fe-2S] domain Abu_2067 PF00291 Pyridoxal-phosphate dependent enzyme Abu_2068 PF00696 Amino acid kinase family Abu_2069 PF00580 UvrD/REP helicase N-terminal domain Abu_2069 PF13361 UvrD-like helicase C-terminal domain Abu_2071 PF03462 PCRF domain Abu_2071 PF00472 RF-1 domain Abu_2072 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Abu_2078 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Abu_2078 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Abu_2081 PF00115 Cytochrome C and Quinol oxidase polypeptide I Abu_2082 PF01668 SmpB protein Abu_2083 PF00288 GHMP kinases N terminal domain Abu_2084 PF01509 TruB family pseudouridylate synthase (N terminal domain) Abu_2085 PF00580 UvrD/REP helicase N-terminal domain Abu_2085 PF13361 UvrD-like helicase C-terminal domain Abu_2086 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Abu_2086 PF03466 LysR substrate binding domain Abu_2087 PF04055 Radical SAM superfamily Abu_2087 PF16199 Radical_SAM C-terminal domain Abu_2088 PF13537 Glutamine amidotransferase domain Abu_2088 PF00156 Phosphoribosyl transferase domain Abu_2089 PF05173 Dihydrodipicolinate reductase, C-terminus Abu_2089 PF01113 Dihydrodipicolinate reductase, N-terminus Abu_2090 PF07992 Pyridine nucleotide-disulphide oxidoreductase Abu_2091 PF00085 Thioredoxin Abu_2092 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Abu_2092 PF02272 DHHA1 domain Abu_2092 PF01411 tRNA synthetases class II (A) Abu_2098 PF00486 Transcriptional regulatory protein, C terminal Abu_2098 PF00072 Response regulator receiver domain Abu_2099 PF13180 PDZ domain Abu_2099 PF17820 PDZ domain Abu_2100 PF00920 Dehydratase family Abu_2114 PF00005 ABC transporter Abu_2114 PF09383 NIL domain Abu_2117 PF01142 tRNA pseudouridine synthase D (TruD) Abu_2118 PF15437 Plasminogen-binding protein pgbA C-terminal Abu_2120 PF13180 PDZ domain Abu_2120 PF03572 Peptidase family S41 Abu_2121 PF01259 SAICAR synthetase Abu_2122 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Abu_2125 PF01553 Acyltransferase Abu_2126 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Abu_2127 PF02416 mttA/Hcf106 family Abu_2128 PF02416 mttA/Hcf106 family Abu_2129 PF03485 Arginyl tRNA synthetase N terminal domain Abu_2129 PF05746 DALR anticodon binding domain Abu_2129 PF00750 tRNA synthetases class I (R) Abu_2131 PF01467 Cytidylyltransferase-like Abu_2132 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Abu_2132 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Abu_2133 PF00162 Phosphoglycerate kinase Abu_2134 PF00121 Triosephosphate isomerase Abu_2136 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Abu_2136 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Abu_2137 PF01817 Chorismate mutase type II Abu_2137 PF01842 ACT domain Abu_2137 PF00800 Prephenate dehydratase Abu_2138 PF00155 Aminotransferase class I and II Abu_2139 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Abu_2139 PF02779 Transketolase, pyrimidine binding domain Abu_2139 PF02780 Transketolase, C-terminal domain Abu_2140 PF00034 Cytochrome c Abu_2140 PF03150 Di-haem cytochrome c peroxidase Abu_2141 PF02545 Maf-like protein Abu_2144 PF00877 NlpC/P60 family Abu_2147 PF03167 Uracil DNA glycosylase superfamily Abu_2148 PF00171 Aldehyde dehydrogenase family Abu_2149 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Abu_2149 PF00205 Thiamine pyrophosphate enzyme, central domain Abu_2149 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Abu_2150 PF04011 LemA family Abu_2153 PF13419 Haloacid dehalogenase-like hydrolase Abu_2154 PF00210 Ferritin-like domain Abu_2157 PF07690 Major Facilitator Superfamily Abu_2159 PF00990 Diguanylate cyclase, GGDEF domain Abu_2159 PF00072 Response regulator receiver domain Abu_2160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Abu_2160 PF00529 HlyD membrane-fusion protein of T1SS Abu_2161 PF00873 AcrB/AcrD/AcrF family Abu_2162 PF02321 Outer membrane efflux protein Abu_2163 PF00593 TonB dependent receptor Abu_2163 PF07715 TonB-dependent Receptor Plug Domain Abu_2165 PF08281 Sigma-70, region 4 Abu_2165 PF04542 Sigma-70 region 2 Abu_2169 PF01053 Cys/Met metabolism PLP-dependent enzyme Abu_2170 PF02082 Transcriptional regulator Abu_2171 PF00291 Pyridoxal-phosphate dependent enzyme Abu_2173 PF01507 Phosphoadenosine phosphosulfate reductase family Abu_2174 PF01507 Phosphoadenosine phosphosulfate reductase family Abu_2175 PF00009 Elongation factor Tu GTP binding domain Abu_2176 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Abu_2176 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Abu_2178 PF02347 Glycine cleavage system P-protein Abu_2179 PF04650 YSIRK type signal peptide Abu_2179 PF17961 Bacterial Ig domain Abu_2179 PF00746 LPXTG cell wall anchor motif Abu_2179 PF17210 SdrD B-like domain Abu_2184 PF02277 Phosphoribosyltransferase Abu_2185 PF00939 Sodium:sulfate symporter transmembrane region Abu_2187 PF11412 Disulphide bond corrector protein DsbC Abu_2187 PF02683 Cytochrome C biogenesis protein transmembrane region Abu_2188 PF08443 RimK-like ATP-grasp domain Abu_2188 PF18030 RimK PreATP-grasp domain Abu_2191 PF00563 EAL domain Abu_2191 PF00990 Diguanylate cyclase, GGDEF domain Abu_2191 PF10442 FIST C domain Abu_2191 PF08495 FIST N domain Abu_2192 PF02666 Phosphatidylserine decarboxylase Abu_2194 PF03562 MltA specific insert domain Abu_2194 PF06725 3D domain Abu_2195 PF00012 Hsp70 protein Abu_2196 PF01025 GrpE Abu_2197 PF01628 HrcA protein C terminal domain Abu_2199 PF01416 tRNA pseudouridine synthase Abu_2202 PF01255 Putative undecaprenyl diphosphate synthase Abu_2203 PF02441 Flavoprotein Abu_2203 PF04127 DNA / pantothenate metabolism flavoprotein Abu_2204 PF12804 MobA-like NTP transferase domain Abu_2204 PF14602 Hexapeptide repeat of succinyl-transferase Abu_2206 PF08148 DSHCT (NUC185) domain Abu_2206 PF00271 Helicase conserved C-terminal domain Abu_2206 PF00270 DEAD/DEAH box helicase Abu_2207 PF05958 tRNA (Uracil-5-)-methyltransferase Abu_2208 PF00293 NUDIX domain Abu_2210 PF13932 GidA associated domain Abu_2210 PF01134 Glucose inhibited division protein A Abu_2211 PF00677 Lumazine binding domain Abu_2214 PF07724 AAA domain (Cdc48 subfamily) Abu_2214 PF10431 C-terminal, D2-small domain, of ClpB protein Abu_2214 PF06689 ClpX C4-type zinc finger Abu_2215 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Abu_2215 PF00132 Bacterial transferase hexapeptide (six repeats) Abu_2216 PF07977 FabA-like domain Abu_2217 PF02684 Lipid-A-disaccharide synthetase Abu_2218 PF02677 Epoxyqueuosine reductase QueH Abu_2220 PF07992 Pyridine nucleotide-disulphide oxidoreductase Abu_2221 PF01261 Xylose isomerase-like TIM barrel Abu_2222 PF02321 Outer membrane efflux protein Abu_2223 PF00873 AcrB/AcrD/AcrF family Abu_2224 PF00529 HlyD membrane-fusion protein of T1SS Abu_2224 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Abu_2226 PF07690 Major Facilitator Superfamily Abu_2227 PF00916 Sulfate permease family Abu_2227 PF01740 STAS domain Abu_2231 PF17758 Proteasomal ATPase OB N-terminal domain Abu_2231 PF16450 Proteasomal ATPase OB C-terminal domain Abu_2231 PF00004 ATPase family associated with various cellular activities (AAA) Abu_2233 PF02621 Menaquinone biosynthesis Abu_2234 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Abu_2235 PF01131 DNA topoisomerase Abu_2235 PF01751 Toprim domain Abu_2235 PF13368 Topoisomerase C-terminal repeat Abu_2237 PF04055 Radical SAM superfamily Abu_2237 PF06968 Biotin and Thiamin Synthesis associated domain Abu_2240 PF00113 Enolase, C-terminal TIM barrel domain Abu_2240 PF03952 Enolase, N-terminal domain Abu_2241 PF00154 recA bacterial DNA recombination protein Abu_2243 PF02719 Polysaccharide biosynthesis protein Abu_2244 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Abu_2245 PF02348 Cytidylyltransferase Abu_2246 PF03102 NeuB family Abu_2246 PF08666 SAF domain Abu_2250 PF02222 ATP-grasp domain Abu_2254 PF00700 Bacterial flagellin C-terminal helical region Abu_2254 PF07196 Flagellin hook IN motif Abu_2254 PF00669 Bacterial flagellin N-terminal helical region Abu_2255 PF07196 Flagellin hook IN motif Abu_2255 PF00669 Bacterial flagellin N-terminal helical region Abu_2255 PF00700 Bacterial flagellin C-terminal helical region Abu_2256 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Abu_2256 PF12801 4Fe-4S binding domain Abu_2256 PF13746 4Fe-4S dicluster domain Abu_2257 PF06418 CTP synthase N-terminus Abu_2257 PF00117 Glutamine amidotransferase class-I Abu_2258 PF17768 RecJ OB domain Abu_2258 PF02272 DHHA1 domain Abu_2258 PF01368 DHH family Abu_2262 PF02811 PHP domain Abu_2262 PF14579 Helix-hairpin-helix motif Abu_2262 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Abu_2262 PF07733 Bacterial DNA polymerase III alpha NTPase domain Abu_2263 PF01975 Survival protein SurE Abu_2266 PF01967 MoaC family Abu_2267 PF01165 Ribosomal protein S21 Abu_2273 PF01027 Inhibitor of apoptosis-promoting Bax1 Abu_2274 PF02581 Thiamine monophosphate synthase Abu_2274 PF17792 ThiD2 family Abu_2276 PF03840 Preprotein translocase SecG subunit Abu_2277 PF01765 Ribosome recycling factor Abu_2278 PF00156 Phosphoribosyl transferase domain Abu_2281 PF01544 CorA-like Mg2+ transporter protein Abu_2282 PF03883 Peroxide stress protein YaaA Abu_2285 PF00149 Calcineurin-like phosphoesterase Abu_2287 PF00593 TonB dependent receptor Abu_2287 PF07715 TonB-dependent Receptor Plug Domain Abu_2288 PF12833 Helix-turn-helix domain Abu_2289 PF00011 Hsp20/alpha crystallin family Abu_2290 PF01814 Hemerythrin HHE cation binding domain Abu_2291 PF17200 Single Cache domain 2 Abu_2291 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Abu_2291 PF00672 HAMP domain Abu_2292 PF00581 Rhodanese-like domain Abu_2292 PF00899 ThiF family Abu_2294 PF14403 Circularly permuted ATP-grasp type 2 Abu_2294 PF04168 A predicted alpha-helical domain with a conserved ER motif. Abu_2295 PF01841 Transglutaminase-like superfamily Abu_2295 PF08379 Bacterial transglutaminase-like N-terminal region Abu_2296 PF17850 CysA C-terminal regulatory domain Abu_2296 PF00005 ABC transporter Abu_2296 PF12857 TOBE-like domain Abu_2297 PF00528 Binding-protein-dependent transport system inner membrane component Abu_2298 PF00528 Binding-protein-dependent transport system inner membrane component Abu_2299 PF00291 Pyridoxal-phosphate dependent enzyme Abu_2300 PF00563 EAL domain Abu_2300 PF08495 FIST N domain Abu_2300 PF10442 FIST C domain Abu_2300 PF00990 Diguanylate cyclase, GGDEF domain Abu_2301 PF02597 ThiS family Abu_2307 PF14403 Circularly permuted ATP-grasp type 2 Abu_2308 PF00679 Elongation factor G C-terminus Abu_2308 PF03144 Elongation factor Tu domain 2 Abu_2308 PF00009 Elongation factor Tu GTP binding domain Abu_2309 PF04143 Sulphur transport Abu_2310 PF01206 Sulfurtransferase TusA Abu_2314 PF07660 Secretin and TonB N terminus short domain Abu_2314 PF07715 TonB-dependent Receptor Plug Domain Abu_2314 PF00593 TonB dependent receptor Abu_2317 PF08448 PAS fold Abu_2317 PF00990 Diguanylate cyclase, GGDEF domain Abu_2318 PF08019 Phosphoethanolamine transferase EptA/EptB Abu_2318 PF00884 Sulfatase Abu_2325 PF00072 Response regulator receiver domain Abu_2325 PF00486 Transcriptional regulatory protein, C terminal Abu_2326 PF00672 HAMP domain Abu_2326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abu_2326 PF00512 His Kinase A (phospho-acceptor) domain Abu_2327 PF08241 Methyltransferase domain Abu_2329 PF11849 Domain of unknown function (DUF3369) Abu_2330 PF02511 Thymidylate synthase complementing protein Abu_2331 PF04960 Glutaminase Abu_2332 PF03458 UPF0126 domain Abu_2334 PF02911 Formyl transferase, C-terminal domain Abu_2334 PF00551 Formyl transferase Abu_2335 PF02075 Crossover junction endodeoxyribonuclease RuvC