locus-tag class description ACIB15232_0001 PF00308 Bacterial dnaA protein ACIB15232_0001 PF08299 Bacterial dnaA protein helix-turn-helix ACIB15232_0001 PF11638 DnaA N-terminal domain ACIB15232_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ACIB15232_0002 PF02767 DNA polymerase III beta subunit, central domain ACIB15232_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ACIB15232_0003 PF00204 DNA gyrase B ACIB15232_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ACIB15232_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0003 PF01751 Toprim domain ACIB15232_0004 PF14489 QueF-like protein ACIB15232_0008 PF13649 Methyltransferase domain ACIB15232_0009 PF00005 ABC transporter ACIB15232_0009 PF08402 TOBE domain ACIB15232_0010 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_0012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIB15232_0012 PF03459 TOBE domain ACIB15232_0013 PF13194 Domain of unknown function (DUF4010) ACIB15232_0014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIB15232_0014 PF03466 LysR substrate binding domain ACIB15232_0017 PF00009 Elongation factor Tu GTP binding domain ACIB15232_0018 PF01507 Phosphoadenosine phosphosulfate reductase family ACIB15232_0019 PF01507 Phosphoadenosine phosphosulfate reductase family ACIB15232_0021 PF00291 Pyridoxal-phosphate dependent enzyme ACIB15232_0022 PF02082 Transcriptional regulator ACIB15232_0023 PF01053 Cys/Met metabolism PLP-dependent enzyme ACIB15232_0028 PF02321 Outer membrane efflux protein ACIB15232_0029 PF00873 AcrB/AcrD/AcrF family ACIB15232_0030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIB15232_0030 PF00529 HlyD membrane-fusion protein of T1SS ACIB15232_0031 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_0031 PF17158 Membrane-associated sensor, integral membrane domain ACIB15232_0033 PF07690 Major Facilitator Superfamily ACIB15232_0034 PF00210 Ferritin-like domain ACIB15232_0035 PF13419 Haloacid dehalogenase-like hydrolase ACIB15232_0036 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACIB15232_0036 PF00205 Thiamine pyrophosphate enzyme, central domain ACIB15232_0036 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACIB15232_0037 PF00171 Aldehyde dehydrogenase family ACIB15232_0038 PF03167 Uracil DNA glycosylase superfamily ACIB15232_0042 PF02810 SEC-C motif ACIB15232_0043 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACIB15232_0043 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ACIB15232_0044 PF03883 Peroxide stress protein YaaA ACIB15232_0045 PF01544 CorA-like Mg2+ transporter protein ACIB15232_0048 PF00156 Phosphoribosyl transferase domain ACIB15232_0049 PF01765 Ribosome recycling factor ACIB15232_0051 PF03840 Preprotein translocase SecG subunit ACIB15232_0053 PF02581 Thiamine monophosphate synthase ACIB15232_0053 PF17792 ThiD2 family ACIB15232_0054 PF01027 Inhibitor of apoptosis-promoting Bax1 ACIB15232_0060 PF07196 Flagellin hook IN motif ACIB15232_0060 PF00700 Bacterial flagellin C-terminal helical region ACIB15232_0060 PF00669 Bacterial flagellin N-terminal helical region ACIB15232_0062 PF00669 Bacterial flagellin N-terminal helical region ACIB15232_0062 PF07196 Flagellin hook IN motif ACIB15232_0062 PF00700 Bacterial flagellin C-terminal helical region ACIB15232_0065 PF02348 Cytidylyltransferase ACIB15232_0067 PF00483 Nucleotidyl transferase ACIB15232_0068 PF02585 GlcNAc-PI de-N-acetylase ACIB15232_0069 PF02911 Formyl transferase, C-terminal domain ACIB15232_0069 PF01370 NAD dependent epimerase/dehydratase family ACIB15232_0069 PF00551 Formyl transferase ACIB15232_0070 PF02350 UDP-N-acetylglucosamine 2-epimerase ACIB15232_0071 PF03102 NeuB family ACIB15232_0071 PF08666 SAF domain ACIB15232_0073 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACIB15232_0074 PF02719 Polysaccharide biosynthesis protein ACIB15232_0076 PF00154 recA bacterial DNA recombination protein ACIB15232_0077 PF00113 Enolase, C-terminal TIM barrel domain ACIB15232_0077 PF03952 Enolase, N-terminal domain ACIB15232_0080 PF06968 Biotin and Thiamin Synthesis associated domain ACIB15232_0080 PF04055 Radical SAM superfamily ACIB15232_0082 PF13368 Topoisomerase C-terminal repeat ACIB15232_0082 PF01751 Toprim domain ACIB15232_0082 PF01131 DNA topoisomerase ACIB15232_0083 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACIB15232_0084 PF02621 Menaquinone biosynthesis ACIB15232_0085 PF01165 Ribosomal protein S21 ACIB15232_0086 PF01967 MoaC family ACIB15232_0089 PF00361 Proton-conducting membrane transporter ACIB15232_0090 PF00361 Proton-conducting membrane transporter ACIB15232_0090 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACIB15232_0091 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACIB15232_0091 PF00361 Proton-conducting membrane transporter ACIB15232_0092 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACIB15232_0093 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACIB15232_0094 PF12838 4Fe-4S dicluster domain ACIB15232_0095 PF00146 NADH dehydrogenase ACIB15232_0096 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACIB15232_0096 PF00384 Molybdopterin oxidoreductase ACIB15232_0096 PF01568 Molydopterin dinucleotide binding domain ACIB15232_0096 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACIB15232_0096 PF12838 4Fe-4S dicluster domain ACIB15232_0099 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACIB15232_0100 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACIB15232_0101 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACIB15232_0102 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACIB15232_0103 PF17758 Proteasomal ATPase OB N-terminal domain ACIB15232_0103 PF16450 Proteasomal ATPase OB C-terminal domain ACIB15232_0103 PF00004 ATPase family associated with various cellular activities (AAA) ACIB15232_0106 PF00916 Sulfate permease family ACIB15232_0106 PF01740 STAS domain ACIB15232_0107 PF01261 Xylose isomerase-like TIM barrel ACIB15232_0108 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIB15232_0110 PF02677 Epoxyqueuosine reductase QueH ACIB15232_0111 PF02684 Lipid-A-disaccharide synthetase ACIB15232_0112 PF07977 FabA-like domain ACIB15232_0113 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACIB15232_0113 PF00132 Bacterial transferase hexapeptide (six repeats) ACIB15232_0114 PF07724 AAA domain (Cdc48 subfamily) ACIB15232_0114 PF06689 ClpX C4-type zinc finger ACIB15232_0114 PF10431 C-terminal, D2-small domain, of ClpB protein ACIB15232_0117 PF00677 Lumazine binding domain ACIB15232_0118 PF01134 Glucose inhibited division protein A ACIB15232_0118 PF13932 GidA associated domain ACIB15232_0119 PF05958 tRNA (Uracil-5-)-methyltransferase ACIB15232_0120 PF00270 DEAD/DEAH box helicase ACIB15232_0120 PF00271 Helicase conserved C-terminal domain ACIB15232_0120 PF17191 RecG wedge domain ACIB15232_0122 PF14602 Hexapeptide repeat of succinyl-transferase ACIB15232_0122 PF12804 MobA-like NTP transferase domain ACIB15232_0123 PF02441 Flavoprotein ACIB15232_0123 PF04127 DNA / pantothenate metabolism flavoprotein ACIB15232_0124 PF01255 Putative undecaprenyl diphosphate synthase ACIB15232_0127 PF01416 tRNA pseudouridine synthase ACIB15232_0128 PF01628 HrcA protein C terminal domain ACIB15232_0129 PF01025 GrpE ACIB15232_0130 PF00012 Hsp70 protein ACIB15232_0132 PF03562 MltA specific insert domain ACIB15232_0132 PF06725 3D domain ACIB15232_0134 PF02666 Phosphatidylserine decarboxylase ACIB15232_0135 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_0135 PF10442 FIST C domain ACIB15232_0135 PF08495 FIST N domain ACIB15232_0135 PF00563 EAL domain ACIB15232_0138 PF08443 RimK-like ATP-grasp domain ACIB15232_0138 PF18030 RimK PreATP-grasp domain ACIB15232_0139 PF00581 Rhodanese-like domain ACIB15232_0140 PF00085 Thioredoxin ACIB15232_0141 PF02683 Cytochrome C biogenesis protein transmembrane region ACIB15232_0141 PF00085 Thioredoxin ACIB15232_0141 PF11412 Disulphide bond corrector protein DsbC ACIB15232_0143 PF00939 Sodium:sulfate symporter transmembrane region ACIB15232_0149 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_0149 PF00072 Response regulator receiver domain ACIB15232_0150 PF17820 PDZ domain ACIB15232_0150 PF13180 PDZ domain ACIB15232_0151 PF00920 Dehydratase family ACIB15232_0161 PF01051 Initiator Replication protein ACIB15232_0163 PF02491 SHS2 domain inserted in FTSA ACIB15232_0169 PF07196 Flagellin hook IN motif ACIB15232_0169 PF00700 Bacterial flagellin C-terminal helical region ACIB15232_0169 PF00669 Bacterial flagellin N-terminal helical region ACIB15232_0170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0171 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_0171 PF00072 Response regulator receiver domain ACIB15232_0172 PF00239 Resolvase, N terminal domain ACIB15232_0172 PF02796 Helix-turn-helix domain of resolvase ACIB15232_0180 PF00005 ABC transporter ACIB15232_0182 PF01258 Prokaryotic dksA/traR C4-type zinc finger ACIB15232_0183 PF01142 tRNA pseudouridine synthase D (TruD) ACIB15232_0184 PF15437 Plasminogen-binding protein pgbA C-terminal ACIB15232_0186 PF13180 PDZ domain ACIB15232_0186 PF03572 Peptidase family S41 ACIB15232_0187 PF01259 SAICAR synthetase ACIB15232_0188 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ACIB15232_0191 PF01553 Acyltransferase ACIB15232_0192 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACIB15232_0193 PF02416 mttA/Hcf106 family ACIB15232_0194 PF02416 mttA/Hcf106 family ACIB15232_0195 PF03485 Arginyl tRNA synthetase N terminal domain ACIB15232_0195 PF05746 DALR anticodon binding domain ACIB15232_0195 PF00750 tRNA synthetases class I (R) ACIB15232_0197 PF01467 Cytidylyltransferase-like ACIB15232_0198 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACIB15232_0198 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACIB15232_0199 PF00162 Phosphoglycerate kinase ACIB15232_0200 PF00121 Triosephosphate isomerase ACIB15232_0202 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACIB15232_0202 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACIB15232_0203 PF00800 Prephenate dehydratase ACIB15232_0203 PF01842 ACT domain ACIB15232_0203 PF01817 Chorismate mutase type II ACIB15232_0204 PF00155 Aminotransferase class I and II ACIB15232_0205 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACIB15232_0205 PF02779 Transketolase, pyrimidine binding domain ACIB15232_0205 PF02780 Transketolase, C-terminal domain ACIB15232_0206 PF03150 Di-haem cytochrome c peroxidase ACIB15232_0206 PF00034 Cytochrome c ACIB15232_0207 PF02545 Maf-like protein ACIB15232_0209 PF00877 NlpC/P60 family ACIB15232_0210 PF00877 NlpC/P60 family ACIB15232_0214 PF02272 DHHA1 domain ACIB15232_0214 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACIB15232_0214 PF01411 tRNA synthetases class II (A) ACIB15232_0215 PF00085 Thioredoxin ACIB15232_0216 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIB15232_0217 PF01113 Dihydrodipicolinate reductase, N-terminus ACIB15232_0217 PF05173 Dihydrodipicolinate reductase, C-terminus ACIB15232_0218 PF13537 Glutamine amidotransferase domain ACIB15232_0218 PF00156 Phosphoribosyl transferase domain ACIB15232_0220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIB15232_0220 PF03466 LysR substrate binding domain ACIB15232_0221 PF00580 UvrD/REP helicase N-terminal domain ACIB15232_0221 PF13361 UvrD-like helicase C-terminal domain ACIB15232_0222 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACIB15232_0223 PF00288 GHMP kinases N terminal domain ACIB15232_0224 PF01668 SmpB protein ACIB15232_0225 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACIB15232_0234 PF03462 PCRF domain ACIB15232_0234 PF00472 RF-1 domain ACIB15232_0235 PF01132 Elongation factor P (EF-P) OB domain ACIB15232_0235 PF08207 Elongation factor P (EF-P) KOW-like domain ACIB15232_0235 PF09285 Elongation factor P, C-terminal ACIB15232_0236 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACIB15232_0236 PF01842 ACT domain ACIB15232_0236 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACIB15232_0237 PF00575 S1 RNA binding domain ACIB15232_0238 PF02401 LytB protein ACIB15232_0239 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACIB15232_0240 PF03484 tRNA synthetase B5 domain ACIB15232_0240 PF03147 Ferredoxin-fold anticodon binding domain ACIB15232_0240 PF01588 Putative tRNA binding domain ACIB15232_0240 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACIB15232_0241 PF01409 tRNA synthetases class II core domain (F) ACIB15232_0241 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACIB15232_0242 PF01230 HIT domain ACIB15232_0243 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACIB15232_0244 PF02801 Beta-ketoacyl synthase, C-terminal domain ACIB15232_0244 PF00109 Beta-ketoacyl synthase, N-terminal domain ACIB15232_0245 PF00550 Phosphopantetheine attachment site ACIB15232_0249 PF06508 Queuosine biosynthesis protein QueC ACIB15232_0251 PF04452 RNA methyltransferase ACIB15232_0254 PF00033 Cytochrome b/b6/petB ACIB15232_0254 PF00032 Cytochrome b(C-terminal)/b6/petD ACIB15232_0256 PF00291 Pyridoxal-phosphate dependent enzyme ACIB15232_0257 PF00696 Amino acid kinase family ACIB15232_0258 PF00580 UvrD/REP helicase N-terminal domain ACIB15232_0258 PF13361 UvrD-like helicase C-terminal domain ACIB15232_0260 PF00119 ATP synthase A chain ACIB15232_0261 PF13291 ACT domain ACIB15232_0261 PF00291 Pyridoxal-phosphate dependent enzyme ACIB15232_0262 PF08267 Cobalamin-independent synthase, N-terminal domain ACIB15232_0262 PF01717 Cobalamin-independent synthase, Catalytic domain ACIB15232_0264 PF01746 tRNA (Guanine-1)-methyltransferase ACIB15232_0265 PF01245 Ribosomal protein L19 ACIB15232_0266 PF09335 SNARE associated Golgi protein ACIB15232_0267 PF00155 Aminotransferase class I and II ACIB15232_0270 PF01042 Endoribonuclease L-PSP ACIB15232_0272 PF17674 HHH domain ACIB15232_0272 PF00575 S1 RNA binding domain ACIB15232_0272 PF09371 Tex-like protein N-terminal domain ACIB15232_0272 PF16921 Tex protein YqgF-like domain ACIB15232_0275 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACIB15232_0275 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACIB15232_0276 PF00563 EAL domain ACIB15232_0276 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_0276 PF03707 Bacterial signalling protein N terminal repeat ACIB15232_0277 PF08402 TOBE domain ACIB15232_0277 PF00005 ABC transporter ACIB15232_0278 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_0279 PF13416 Bacterial extracellular solute-binding protein ACIB15232_0280 PF00117 Glutamine amidotransferase class-I ACIB15232_0288 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACIB15232_0289 PF00905 Penicillin binding protein transpeptidase domain ACIB15232_0289 PF03793 PASTA domain ACIB15232_0289 PF03717 Penicillin-binding Protein dimerisation domain ACIB15232_0290 PF01098 Cell cycle protein ACIB15232_0291 PF04101 Glycosyltransferase family 28 C-terminal domain ACIB15232_0291 PF03033 Glycosyltransferase family 28 N-terminal domain ACIB15232_0292 PF02673 Bacitracin resistance protein BacA ACIB15232_0293 PF02621 Menaquinone biosynthesis ACIB15232_0295 PF02391 MoaE protein ACIB15232_0297 PF03951 Glutamine synthetase, beta-Grasp domain ACIB15232_0297 PF00120 Glutamine synthetase, catalytic domain ACIB15232_0298 PF00905 Penicillin binding protein transpeptidase domain ACIB15232_0298 PF00912 Transglycosylase ACIB15232_0299 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACIB15232_0299 PF00005 ABC transporter ACIB15232_0300 PF01676 Metalloenzyme superfamily ACIB15232_0300 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACIB15232_0301 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ACIB15232_0301 PF00953 Glycosyl transferase family 4 ACIB15232_0302 PF08245 Mur ligase middle domain ACIB15232_0307 PF03143 Elongation factor Tu C-terminal domain ACIB15232_0307 PF03144 Elongation factor Tu domain 2 ACIB15232_0307 PF00009 Elongation factor Tu GTP binding domain ACIB15232_0308 PF00471 Ribosomal protein L33 ACIB15232_0311 PF02357 Transcription termination factor nusG ACIB15232_0312 PF00298 Ribosomal protein L11, RNA binding domain ACIB15232_0312 PF03946 Ribosomal protein L11, N-terminal domain ACIB15232_0313 PF00687 Ribosomal protein L1p/L10e family ACIB15232_0314 PF00466 Ribosomal protein L10 ACIB15232_0315 PF00542 Ribosomal protein L7/L12 C-terminal domain ACIB15232_0315 PF16320 Ribosomal protein L7/L12 dimerisation domain ACIB15232_0316 PF00562 RNA polymerase Rpb2, domain 6 ACIB15232_0316 PF10385 RNA polymerase beta subunit external 1 domain ACIB15232_0316 PF04560 RNA polymerase Rpb2, domain 7 ACIB15232_0316 PF04561 RNA polymerase Rpb2, domain 2 ACIB15232_0316 PF04563 RNA polymerase beta subunit ACIB15232_0316 PF04565 RNA polymerase Rpb2, domain 3 ACIB15232_0317 PF04997 RNA polymerase Rpb1, domain 1 ACIB15232_0317 PF00623 RNA polymerase Rpb1, domain 2 ACIB15232_0317 PF04983 RNA polymerase Rpb1, domain 3 ACIB15232_0317 PF05000 RNA polymerase Rpb1, domain 4 ACIB15232_0317 PF04998 RNA polymerase Rpb1, domain 5 ACIB15232_0320 PF00672 HAMP domain ACIB15232_0320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0320 PF02203 Tar ligand binding domain homologue ACIB15232_0321 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACIB15232_0321 PF00578 AhpC/TSA family ACIB15232_0322 PF00085 Thioredoxin ACIB15232_0323 PF02659 Putative manganese efflux pump ACIB15232_0324 PF16916 Dimerisation domain of Zinc Transporter ACIB15232_0324 PF01545 Cation efflux family ACIB15232_0328 PF08447 PAS fold ACIB15232_0328 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0329 PF07690 Major Facilitator Superfamily ACIB15232_0331 PF00164 Ribosomal protein S12/S23 ACIB15232_0332 PF00177 Ribosomal protein S7p/S5e ACIB15232_0333 PF00679 Elongation factor G C-terminus ACIB15232_0333 PF14492 Elongation Factor G, domain II ACIB15232_0333 PF03144 Elongation factor Tu domain 2 ACIB15232_0333 PF00009 Elongation factor Tu GTP binding domain ACIB15232_0333 PF03764 Elongation factor G, domain IV ACIB15232_0334 PF01513 ATP-NAD kinase ACIB15232_0335 PF13476 AAA domain ACIB15232_0336 PF00672 HAMP domain ACIB15232_0336 PF17200 Single Cache domain 2 ACIB15232_0336 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0336 PF00672 HAMP domain ACIB15232_0336 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0336 PF17200 Single Cache domain 2 ACIB15232_0337 PF01136 Peptidase family U32 ACIB15232_0339 PF00731 AIR carboxylase ACIB15232_0341 PF02091 Glycyl-tRNA synthetase alpha subunit ACIB15232_0342 PF01784 NIF3 (NGG1p interacting factor 3) ACIB15232_0344 PF02390 Putative methyltransferase ACIB15232_0344 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACIB15232_0345 PF00849 RNA pseudouridylate synthase ACIB15232_0346 PF02881 SRP54-type protein, helical bundle domain ACIB15232_0346 PF02978 Signal peptide binding domain ACIB15232_0346 PF00448 SRP54-type protein, GTPase domain ACIB15232_0347 PF00886 Ribosomal protein S16 ACIB15232_0349 PF01782 RimM N-terminal domain ACIB15232_0352 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACIB15232_0352 PF00460 Flagella basal body rod protein ACIB15232_0353 PF00072 Response regulator receiver domain ACIB15232_0355 PF00460 Flagella basal body rod protein ACIB15232_0355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACIB15232_0356 PF00460 Flagella basal body rod protein ACIB15232_0357 PF01514 Secretory protein of YscJ/FliF family ACIB15232_0357 PF08345 Flagellar M-ring protein C-terminal ACIB15232_0358 PF01706 FliG C-terminal domain ACIB15232_0358 PF14841 FliG middle domain ACIB15232_0358 PF14842 FliG N-terminal domain ACIB15232_0360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACIB15232_0362 PF07559 Flagellar basal body protein FlaE ACIB15232_0362 PF07196 Flagellin hook IN motif ACIB15232_0362 PF00460 Flagella basal body rod protein ACIB15232_0362 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACIB15232_0363 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACIB15232_0363 PF07196 Flagellin hook IN motif ACIB15232_0363 PF00460 Flagella basal body rod protein ACIB15232_0363 PF07559 Flagellar basal body protein FlaE ACIB15232_0367 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACIB15232_0367 PF16973 Flagellar motor switch protein FliN N-terminal ACIB15232_0371 PF00448 SRP54-type protein, GTPase domain ACIB15232_0372 PF10609 NUBPL iron-transfer P-loop NTPase ACIB15232_0374 PF02049 Flagellar hook-basal body complex protein FliE ACIB15232_0375 PF00460 Flagella basal body rod protein ACIB15232_0375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACIB15232_0378 PF01312 FlhB HrpN YscU SpaS Family ACIB15232_0380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIB15232_0380 PF18269 T3SS EscN ATPase C-terminal domain ACIB15232_0381 PF00700 Bacterial flagellin C-terminal helical region ACIB15232_0381 PF00669 Bacterial flagellin N-terminal helical region ACIB15232_0382 PF00771 FHIPEP family ACIB15232_0384 PF01613 Flavin reductase like domain ACIB15232_0385 PF01741 Large-conductance mechanosensitive channel, MscL ACIB15232_0386 PF02203 Tar ligand binding domain homologue ACIB15232_0386 PF00672 HAMP domain ACIB15232_0386 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0390 PF01575 MaoC like domain ACIB15232_0391 PF00501 AMP-binding enzyme ACIB15232_0391 PF13193 AMP-binding enzyme C-terminal domain ACIB15232_0394 PF02617 ATP-dependent Clp protease adaptor protein ClpS ACIB15232_0395 PF02861 Clp amino terminal domain, pathogenicity island component ACIB15232_0395 PF10431 C-terminal, D2-small domain, of ClpB protein ACIB15232_0395 PF07724 AAA domain (Cdc48 subfamily) ACIB15232_0395 PF00004 ATPase family associated with various cellular activities (AAA) ACIB15232_0395 PF17871 AAA lid domain ACIB15232_0402 PF03631 Virulence factor BrkB ACIB15232_0403 PF02913 FAD linked oxidases, C-terminal domain ACIB15232_0403 PF01565 FAD binding domain ACIB15232_0405 PF00578 AhpC/TSA family ACIB15232_0406 PF13649 Methyltransferase domain ACIB15232_0408 PF01479 S4 domain ACIB15232_0408 PF01728 FtsJ-like methyltransferase ACIB15232_0409 PF09186 Domain of unknown function (DUF1949) ACIB15232_0409 PF01205 Uncharacterized protein family UPF0029 ACIB15232_0412 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACIB15232_0414 PF00793 DAHP synthetase I family ACIB15232_0415 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACIB15232_0416 PF01029 NusB family ACIB15232_0417 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACIB15232_0430 PF00459 Inositol monophosphatase family ACIB15232_0431 PF00037 4Fe-4S binding domain ACIB15232_0433 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACIB15232_0436 PF01219 Prokaryotic diacylglycerol kinase ACIB15232_0438 PF00483 Nucleotidyl transferase ACIB15232_0439 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACIB15232_0440 PF04321 RmlD substrate binding domain ACIB15232_0441 PF16363 GDP-mannose 4,6 dehydratase ACIB15232_0444 PF00535 Glycosyl transferase family 2 ACIB15232_0445 PF00535 Glycosyl transferase family 2 ACIB15232_0447 PF03062 MBOAT, membrane-bound O-acyltransferase family ACIB15232_0449 PF03062 MBOAT, membrane-bound O-acyltransferase family ACIB15232_0451 PF00534 Glycosyl transferases group 1 ACIB15232_0451 PF13439 Glycosyltransferase Family 4 ACIB15232_0454 PF00535 Glycosyl transferase family 2 ACIB15232_0457 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACIB15232_0458 PF00884 Sulfatase ACIB15232_0459 PF13580 SIS domain ACIB15232_0460 PF01467 Cytidylyltransferase-like ACIB15232_0460 PF00294 pfkB family carbohydrate kinase ACIB15232_0461 PF01370 NAD dependent epimerase/dehydratase family ACIB15232_0462 PF08645 Polynucleotide kinase 3 phosphatase ACIB15232_0464 PF00830 Ribosomal L28 family ACIB15232_0466 PF01960 ArgJ family ACIB15232_0468 PF03989 DNA gyrase C-terminal domain, beta-propeller ACIB15232_0468 PF00521 DNA gyrase/topoisomerase IV, subunit A ACIB15232_0469 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACIB15232_0469 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACIB15232_0471 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACIB15232_0479 PF09905 DNA-binding protein VF530 ACIB15232_0483 PF01209 ubiE/COQ5 methyltransferase family ACIB15232_0484 PF13742 OB-fold nucleic acid binding domain ACIB15232_0484 PF02601 Exonuclease VII, large subunit ACIB15232_0485 PF01584 CheW-like domain ACIB15232_0486 PF00072 Response regulator receiver domain ACIB15232_0487 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACIB15232_0488 PF02261 Aspartate decarboxylase ACIB15232_0489 PF02575 YbaB/EbfC DNA-binding family ACIB15232_0490 PF00348 Polyprenyl synthetase ACIB15232_0491 PF00166 Chaperonin 10 Kd subunit ACIB15232_0492 PF00118 TCP-1/cpn60 chaperonin family ACIB15232_0495 PF00072 Response regulator receiver domain ACIB15232_0495 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_0496 PF18719 ArlS sensor domain ACIB15232_0496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0496 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_0497 PF00459 Inositol monophosphatase family ACIB15232_0498 PF01380 SIS domain ACIB15232_0499 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACIB15232_0499 PF02772 S-adenosylmethionine synthetase, central domain ACIB15232_0499 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACIB15232_0500 PF01039 Carboxyl transferase domain ACIB15232_0500 PF17848 Acetyl-coA carboxylase zinc finger domain ACIB15232_0501 PF02581 Thiamine monophosphate synthase ACIB15232_0502 PF02590 Predicted SPOUT methyltransferase ACIB15232_0504 PF01207 Dihydrouridine synthase (Dus) ACIB15232_0506 PF01434 Peptidase family M41 ACIB15232_0506 PF00004 ATPase family associated with various cellular activities (AAA) ACIB15232_0506 PF17862 AAA+ lid domain ACIB15232_0507 PF01594 AI-2E family transporter ACIB15232_0508 PF17864 RuvB AAA lid domain ACIB15232_0508 PF05491 RuvB C-terminal winged helix domain ACIB15232_0508 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACIB15232_0509 PF02548 Ketopantoate hydroxymethyltransferase ACIB15232_0510 PF00290 Tryptophan synthase alpha chain ACIB15232_0511 PF04377 Arginine-tRNA-protein transferase, C terminus ACIB15232_0511 PF04376 Arginine-tRNA-protein transferase, N terminus ACIB15232_0513 PF07670 Nucleoside recognition ACIB15232_0513 PF02421 Ferrous iron transport protein B ACIB15232_0513 PF07664 Ferrous iron transport protein B C terminus ACIB15232_0515 PF01475 Ferric uptake regulator family ACIB15232_0518 PF12833 Helix-turn-helix domain ACIB15232_0518 PF00072 Response regulator receiver domain ACIB15232_0519 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0519 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_0519 PF00989 PAS fold ACIB15232_0519 PF08447 PAS fold ACIB15232_0523 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_0524 PF00293 NUDIX domain ACIB15232_0524 PF13344 Haloacid dehalogenase-like hydrolase ACIB15232_0525 PF00149 Calcineurin-like phosphoesterase ACIB15232_0528 PF01047 MarR family ACIB15232_0530 PF13426 PAS domain ACIB15232_0530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0530 PF08447 PAS fold ACIB15232_0533 PF16653 Saccharopine dehydrogenase C-terminal domain ACIB15232_0533 PF03435 Saccharopine dehydrogenase NADP binding domain ACIB15232_0534 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACIB15232_0535 PF03976 Polyphosphate kinase 2 (PPK2) ACIB15232_0536 PF03976 Polyphosphate kinase 2 (PPK2) ACIB15232_0537 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIB15232_0537 PF05698 Bacterial trigger factor protein (TF) C-terminus ACIB15232_0537 PF05697 Bacterial trigger factor protein (TF) ACIB15232_0538 PF00574 Clp protease ACIB15232_0539 PF01327 Polypeptide deformylase ACIB15232_0549 PF00682 HMGL-like ACIB15232_0549 PF08502 LeuA allosteric (dimerisation) domain ACIB15232_0555 PF01695 IstB-like ATP binding protein ACIB15232_0556 PF02796 Helix-turn-helix domain of resolvase ACIB15232_0556 PF00665 Integrase core domain ACIB15232_0560 PF00873 AcrB/AcrD/AcrF family ACIB15232_0563 PF08359 YsiA-like protein, C-terminal region ACIB15232_0563 PF00440 Bacterial regulatory proteins, tetR family ACIB15232_0566 PF07517 SecA DEAD-like domain ACIB15232_0566 PF01043 SecA preprotein cross-linking domain ACIB15232_0566 PF07516 SecA Wing and Scaffold domain ACIB15232_0568 PF01914 MarC family integral membrane protein ACIB15232_0569 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_0569 PF00072 Response regulator receiver domain ACIB15232_0570 PF00977 Histidine biosynthesis protein ACIB15232_0571 PF00117 Glutamine amidotransferase class-I ACIB15232_0573 PF00009 Elongation factor Tu GTP binding domain ACIB15232_0573 PF03144 Elongation factor Tu domain 2 ACIB15232_0573 PF06421 GTP-binding protein LepA C-terminus ACIB15232_0573 PF00679 Elongation factor G C-terminus ACIB15232_0574 PF13488 Glycine zipper ACIB15232_0574 PF00691 OmpA family ACIB15232_0575 PF00691 OmpA family ACIB15232_0575 PF05736 OprF membrane domain ACIB15232_0576 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACIB15232_0576 PF14572 Phosphoribosyl synthetase-associated domain ACIB15232_0582 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACIB15232_0583 PF00557 Metallopeptidase family M24 ACIB15232_0583 PF01321 Creatinase/Prolidase N-terminal domain ACIB15232_0584 PF01220 Dehydroquinase class II ACIB15232_0585 PF01979 Amidohydrolase family ACIB15232_0586 PF01343 Peptidase family S49 ACIB15232_0587 PF00871 Acetokinase family ACIB15232_0588 PF01515 Phosphate acetyl/butaryl transferase ACIB15232_0589 PF00871 Acetokinase family ACIB15232_0590 PF00871 Acetokinase family ACIB15232_0591 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACIB15232_0591 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACIB15232_0591 PF14579 Helix-hairpin-helix motif ACIB15232_0591 PF02811 PHP domain ACIB15232_0591 PF00929 Exonuclease ACIB15232_0593 PF00474 Sodium:solute symporter family ACIB15232_0595 PF00474 Sodium:solute symporter family ACIB15232_0599 PF14579 Helix-hairpin-helix motif ACIB15232_0599 PF02811 PHP domain ACIB15232_0599 PF11490 DNA polymerase III polC-type N-terminus II ACIB15232_0599 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACIB15232_0599 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACIB15232_0599 PF00929 Exonuclease ACIB15232_0601 PF00474 Sodium:solute symporter family ACIB15232_0603 PF00072 Response regulator receiver domain ACIB15232_0603 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_0604 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_0604 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0613 PF02464 Competence-damaged protein ACIB15232_0613 PF18146 Damage-inducible protein CinA KH domain ACIB15232_0613 PF00994 Probable molybdopterin binding domain ACIB15232_0614 PF06039 Malate:quinone oxidoreductase (Mqo) ACIB15232_0615 PF00133 tRNA synthetases class I (I, L, M and V) ACIB15232_0615 PF08264 Anticodon-binding domain of tRNA ACIB15232_0618 PF08245 Mur ligase middle domain ACIB15232_0618 PF02875 Mur ligase family, glutamate ligase domain ACIB15232_0619 PF00318 Ribosomal protein S2 ACIB15232_0620 PF00889 Elongation factor TS ACIB15232_0621 PF00005 ABC transporter ACIB15232_0623 PF00625 Guanylate kinase ACIB15232_0624 PF00072 Response regulator receiver domain ACIB15232_0624 PF02954 Bacterial regulatory protein, Fis family ACIB15232_0624 PF00158 Sigma-54 interaction domain ACIB15232_0625 PF00403 Heavy-metal-associated domain ACIB15232_0628 PF00005 ABC transporter ACIB15232_0628 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACIB15232_0629 PF00762 Ferrochelatase ACIB15232_0630 PF01368 DHH family ACIB15232_0630 PF02833 DHHA2 domain ACIB15232_0631 PF00924 Mechanosensitive ion channel ACIB15232_0632 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACIB15232_0632 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACIB15232_0634 PF00491 Arginase family ACIB15232_0635 PF00313 'Cold-shock' DNA-binding domain ACIB15232_0636 PF00005 ABC transporter ACIB15232_0637 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_0638 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_0639 PF12849 PBP superfamily domain ACIB15232_0640 PF04073 Aminoacyl-tRNA editing domain ACIB15232_0646 PF04403 Paraquat-inducible protein A ACIB15232_0647 PF02470 MlaD protein ACIB15232_0653 PF00183 Hsp90 protein ACIB15232_0654 PF13533 Biotin-lipoyl like ACIB15232_0655 PF00005 ABC transporter ACIB15232_0658 PF01964 Radical SAM ThiC family ACIB15232_0659 PF17284 Spermidine synthase tetramerisation domain ACIB15232_0660 PF08447 PAS fold ACIB15232_0660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0663 PF00563 EAL domain ACIB15232_0663 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_0663 PF10442 FIST C domain ACIB15232_0663 PF08495 FIST N domain ACIB15232_0666 PF00270 DEAD/DEAH box helicase ACIB15232_0666 PF03880 DbpA RNA binding domain ACIB15232_0666 PF00271 Helicase conserved C-terminal domain ACIB15232_0667 PF03707 Bacterial signalling protein N terminal repeat ACIB15232_0667 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_0667 PF00563 EAL domain ACIB15232_0668 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACIB15232_0668 PF01243 Pyridoxamine 5'-phosphate oxidase ACIB15232_0671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0671 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_0672 PF00005 ABC transporter ACIB15232_0673 PF00950 ABC 3 transport family ACIB15232_0674 PF17783 CvfB-like winged helix domain ACIB15232_0674 PF13509 S1 domain ACIB15232_0675 PF08534 Redoxin ACIB15232_0677 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACIB15232_0677 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACIB15232_0678 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACIB15232_0680 PF00580 UvrD/REP helicase N-terminal domain ACIB15232_0680 PF13361 UvrD-like helicase C-terminal domain ACIB15232_0681 PF00999 Sodium/hydrogen exchanger family ACIB15232_0681 PF02080 TrkA-C domain ACIB15232_0681 PF02254 TrkA-N domain ACIB15232_0682 PF00174 Oxidoreductase molybdopterin binding domain ACIB15232_0683 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACIB15232_0684 PF00034 Cytochrome c ACIB15232_0698 PF14659 Phage integrase, N-terminal SAM-like domain ACIB15232_0698 PF00589 Phage integrase family ACIB15232_0707 PF09107 Elongation factor SelB, winged helix ACIB15232_0707 PF09106 Elongation factor SelB, winged helix ACIB15232_0707 PF03144 Elongation factor Tu domain 2 ACIB15232_0707 PF00009 Elongation factor Tu GTP binding domain ACIB15232_0707 PF09105 Elongation factor SelB, winged helix ACIB15232_0708 PF03841 L-seryl-tRNA selenium transferase ACIB15232_0713 PF00970 Oxidoreductase FAD-binding domain ACIB15232_0713 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIB15232_0713 PF00175 Oxidoreductase NAD-binding domain ACIB15232_0715 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACIB15232_0717 PF00255 Glutathione peroxidase ACIB15232_0719 PF01966 HD domain ACIB15232_0723 PF01841 Transglutaminase-like superfamily ACIB15232_0726 PF00072 Response regulator receiver domain ACIB15232_0727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0727 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_0727 PF08448 PAS fold ACIB15232_0727 PF13188 PAS domain ACIB15232_0727 PF00072 Response regulator receiver domain ACIB15232_0733 PF13247 4Fe-4S dicluster domain ACIB15232_0735 PF02634 FdhD/NarQ family ACIB15232_0738 PF00994 Probable molybdopterin binding domain ACIB15232_0738 PF03454 MoeA C-terminal region (domain IV) ACIB15232_0738 PF03453 MoeA N-terminal region (domain I and II) ACIB15232_0739 PF12849 PBP superfamily domain ACIB15232_0740 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_0741 PF00005 ABC transporter ACIB15232_0745 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIB15232_0745 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ACIB15232_0745 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACIB15232_0747 PF00817 impB/mucB/samB family ACIB15232_0747 PF11799 impB/mucB/samB family C-terminal domain ACIB15232_0748 PF01384 Phosphate transporter family ACIB15232_0751 PF00682 HMGL-like ACIB15232_0752 PF00075 RNase H ACIB15232_0753 PF00672 HAMP domain ACIB15232_0753 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0753 PF02203 Tar ligand binding domain homologue ACIB15232_0756 PF00270 DEAD/DEAH box helicase ACIB15232_0756 PF00271 Helicase conserved C-terminal domain ACIB15232_0757 PF00403 Heavy-metal-associated domain ACIB15232_0758 PF01263 Aldose 1-epimerase ACIB15232_0759 PF04055 Radical SAM superfamily ACIB15232_0759 PF08497 Radical SAM N-terminal ACIB15232_0760 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIB15232_0760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIB15232_0761 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACIB15232_0761 PF02817 e3 binding domain ACIB15232_0761 PF00364 Biotin-requiring enzyme ACIB15232_0762 PF00456 Transketolase, thiamine diphosphate binding domain ACIB15232_0762 PF17831 Pyruvate dehydrogenase E1 component middle domain ACIB15232_0763 PF03099 Biotin/lipoate A/B protein ligase family ACIB15232_0763 PF10437 Bacterial lipoate protein ligase C-terminus ACIB15232_0764 PF04055 Radical SAM superfamily ACIB15232_0767 PF00890 FAD binding domain ACIB15232_0767 PF02910 Fumarate reductase flavoprotein C-term ACIB15232_0768 PF00117 Glutamine amidotransferase class-I ACIB15232_0768 PF00958 GMP synthase C terminal domain ACIB15232_0768 PF02540 NAD synthase ACIB15232_0769 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ACIB15232_0773 PF00561 alpha/beta hydrolase fold ACIB15232_0775 PF01170 Putative RNA methylase family UPF0020 ACIB15232_0775 PF02926 THUMP domain ACIB15232_0775 PF10672 S-adenosylmethionine-dependent methyltransferase ACIB15232_0777 PF01471 Putative peptidoglycan binding domain ACIB15232_0777 PF03734 L,D-transpeptidase catalytic domain ACIB15232_0782 PF00005 ABC transporter ACIB15232_0782 PF17755 UvrA DNA-binding domain ACIB15232_0782 PF17760 UvrA interaction domain ACIB15232_0786 PF02926 THUMP domain ACIB15232_0786 PF02568 Thiamine biosynthesis protein (ThiI) ACIB15232_0789 PF12823 Domain of unknown function (DUF3817) ACIB15232_0792 PF05661 Protein of unknown function (DUF808) ACIB15232_0793 PF01522 Polysaccharide deacetylase ACIB15232_0799 PF00270 DEAD/DEAH box helicase ACIB15232_0799 PF00271 Helicase conserved C-terminal domain ACIB15232_0799 PF17764 3′ DNA-binding domain (3′BD) ACIB15232_0799 PF18074 Primosomal protein N C-terminal domain ACIB15232_0799 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACIB15232_0800 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ACIB15232_0800 PF14602 Hexapeptide repeat of succinyl-transferase ACIB15232_0802 PF00005 ABC transporter ACIB15232_0802 PF12848 ABC transporter ACIB15232_0802 PF16326 ABC transporter C-terminal domain ACIB15232_0803 PF18381 YcaO cyclodehydratase C-terminal domain ACIB15232_0803 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ACIB15232_0805 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACIB15232_0805 PF02805 Metal binding domain of Ada ACIB15232_0805 PF12833 Helix-turn-helix domain ACIB15232_0805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACIB15232_0806 PF00464 Serine hydroxymethyltransferase ACIB15232_0808 PF00999 Sodium/hydrogen exchanger family ACIB15232_0808 PF02254 TrkA-N domain ACIB15232_0810 PF02600 Disulfide bond formation protein DsbB ACIB15232_0813 PF08534 Redoxin ACIB15232_0814 PF13419 Haloacid dehalogenase-like hydrolase ACIB15232_0815 PF03641 Possible lysine decarboxylase ACIB15232_0818 PF04333 MlaA lipoprotein ACIB15232_0819 PF01709 Transcriptional regulator ACIB15232_0823 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_0823 PF00563 EAL domain ACIB15232_0823 PF03707 Bacterial signalling protein N terminal repeat ACIB15232_0825 PF11791 Aconitate B N-terminal domain ACIB15232_0825 PF00330 Aconitase family (aconitate hydratase) ACIB15232_0825 PF06434 Aconitate hydratase 2 N-terminus ACIB15232_0826 PF01545 Cation efflux family ACIB15232_0826 PF16916 Dimerisation domain of Zinc Transporter ACIB15232_0827 PF00155 Aminotransferase class I and II ACIB15232_0828 PF01863 Protein of unknown function DUF45 ACIB15232_0832 PF00005 ABC transporter ACIB15232_0833 PF02390 Putative methyltransferase ACIB15232_0834 PF00128 Alpha amylase, catalytic domain ACIB15232_0834 PF02903 Alpha amylase, N-terminal ig-like domain ACIB15232_0835 PF01479 S4 domain ACIB15232_0835 PF00849 RNA pseudouridylate synthase ACIB15232_0836 PF01098 Cell cycle protein ACIB15232_0837 PF03544 Gram-negative bacterial TonB protein C-terminal ACIB15232_0838 PF00202 Aminotransferase class-III ACIB15232_0839 PF06865 Pyrimidine/purine nucleoside phosphorylase ACIB15232_0842 PF00140 Sigma-70 factor, region 1.2 ACIB15232_0842 PF04542 Sigma-70 region 2 ACIB15232_0842 PF04539 Sigma-70 region 3 ACIB15232_0842 PF04545 Sigma-70, region 4 ACIB15232_0843 PF00694 Aconitase C-terminal domain ACIB15232_0844 PF00180 Isocitrate/isopropylmalate dehydrogenase ACIB15232_0847 PF00444 Ribosomal protein L36 ACIB15232_0848 PF00416 Ribosomal protein S13/S18 ACIB15232_0849 PF00411 Ribosomal protein S11 ACIB15232_0850 PF01479 S4 domain ACIB15232_0850 PF00163 Ribosomal protein S4/S9 N-terminal domain ACIB15232_0851 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACIB15232_0851 PF01000 RNA polymerase Rpb3/RpoA insert domain ACIB15232_0851 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACIB15232_0852 PF01196 Ribosomal protein L17 ACIB15232_0853 PF01425 Amidase ACIB15232_0854 PF00478 IMP dehydrogenase / GMP reductase domain ACIB15232_0854 PF00571 CBS domain ACIB15232_0857 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0857 PF00672 HAMP domain ACIB15232_0857 PF02203 Tar ligand binding domain homologue ACIB15232_0858 PF12826 Helix-hairpin-helix motif ACIB15232_0858 PF03120 NAD-dependent DNA ligase OB-fold domain ACIB15232_0858 PF01653 NAD-dependent DNA ligase adenylation domain ACIB15232_0858 PF00533 BRCA1 C Terminus (BRCT) domain ACIB15232_0859 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_0859 PF00672 HAMP domain ACIB15232_0859 PF02203 Tar ligand binding domain homologue ACIB15232_0860 PF03738 Glutathionylspermidine synthase preATP-grasp ACIB15232_0862 PF00005 ABC transporter ACIB15232_0863 PF00893 Small Multidrug Resistance protein ACIB15232_0867 PF02525 Flavodoxin-like fold ACIB15232_0868 PF01161 Phosphatidylethanolamine-binding protein ACIB15232_0871 PF03601 Conserved hypothetical protein 698 ACIB15232_0874 PF01548 Transposase ACIB15232_0874 PF02371 Transposase IS116/IS110/IS902 family ACIB15232_0875 PF01638 HxlR-like helix-turn-helix ACIB15232_0876 PF02525 Flavodoxin-like fold ACIB15232_0877 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIB15232_0878 PF00881 Nitroreductase family ACIB15232_0880 PF00005 ABC transporter ACIB15232_0880 PF12848 ABC transporter ACIB15232_0881 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACIB15232_0884 PF11066 Protein of unknown function (DUF2867) ACIB15232_0884 PF13460 NAD(P)H-binding ACIB15232_0885 PF13462 Thioredoxin ACIB15232_0886 PF01641 SelR domain ACIB15232_0886 PF08534 Redoxin ACIB15232_0886 PF01625 Peptide methionine sulfoxide reductase ACIB15232_0887 PF00873 AcrB/AcrD/AcrF family ACIB15232_0888 PF00873 AcrB/AcrD/AcrF family ACIB15232_0889 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIB15232_0891 PF11849 Domain of unknown function (DUF3369) ACIB15232_0892 PF00813 FliP family ACIB15232_0893 PF00905 Penicillin binding protein transpeptidase domain ACIB15232_0893 PF03717 Penicillin-binding Protein dimerisation domain ACIB15232_0897 PF08447 PAS fold ACIB15232_0897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0897 PF08448 PAS fold ACIB15232_0898 PF01168 Alanine racemase, N-terminal domain ACIB15232_0898 PF00842 Alanine racemase, C-terminal domain ACIB15232_0899 PF02151 UvrB/uvrC motif ACIB15232_0899 PF08459 UvrC Helix-hairpin-helix N-terminal ACIB15232_0899 PF01541 GIY-YIG catalytic domain ACIB15232_0900 PF04973 Nicotinamide mononucleotide transporter ACIB15232_0902 PF00873 AcrB/AcrD/AcrF family ACIB15232_0903 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIB15232_0909 PF02678 Pirin ACIB15232_0909 PF17954 Quercetinase C-terminal cupin domain ACIB15232_0910 PF00672 HAMP domain ACIB15232_0910 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_0910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0911 PF00072 Response regulator receiver domain ACIB15232_0911 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_0913 PF01914 MarC family integral membrane protein ACIB15232_0914 PF09962 Uncharacterized conserved protein (DUF2196) ACIB15232_0915 PF11849 Domain of unknown function (DUF3369) ACIB15232_0918 PF02796 Helix-turn-helix domain of resolvase ACIB15232_0918 PF00239 Resolvase, N terminal domain ACIB15232_0919 PF00072 Response regulator receiver domain ACIB15232_0919 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_0920 PF08521 Two-component sensor kinase N-terminal ACIB15232_0920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0920 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_0921 PF04076 Bacterial OB fold (BOF) protein ACIB15232_0928 PF01740 STAS domain ACIB15232_0928 PF00916 Sulfate permease family ACIB15232_0929 PF02796 Helix-turn-helix domain of resolvase ACIB15232_0929 PF00239 Resolvase, N terminal domain ACIB15232_0933 PF01695 IstB-like ATP binding protein ACIB15232_0934 PF00665 Integrase core domain ACIB15232_0939 PF02899 Phage integrase, N-terminal SAM-like domain ACIB15232_0939 PF00589 Phage integrase family ACIB15232_0940 PF02463 RecF/RecN/SMC N terminal domain ACIB15232_0955 PF00589 Phage integrase family ACIB15232_0955 PF12167 Arm DNA-binding domain ACIB15232_0956 PF03061 Thioesterase superfamily ACIB15232_0958 PF16491 CAAX prenyl protease N-terminal, five membrane helices ACIB15232_0958 PF01435 Peptidase family M48 ACIB15232_0959 PF02646 RmuC family ACIB15232_0960 PF04228 Putative neutral zinc metallopeptidase ACIB15232_0962 PF00994 Probable molybdopterin binding domain ACIB15232_0962 PF03453 MoeA N-terminal region (domain I and II) ACIB15232_0962 PF03454 MoeA C-terminal region (domain IV) ACIB15232_0964 PF01171 PP-loop family ACIB15232_0966 PF00085 Thioredoxin ACIB15232_0969 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_0969 PF01590 GAF domain ACIB15232_0969 PF00563 EAL domain ACIB15232_0969 PF00360 Phytochrome region ACIB15232_0971 PF02541 Ppx/GppA phosphatase family ACIB15232_0973 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACIB15232_0973 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACIB15232_0973 PF00205 Thiamine pyrophosphate enzyme, central domain ACIB15232_0974 PF10369 Small subunit of acetolactate synthase ACIB15232_0975 PF00132 Bacterial transferase hexapeptide (six repeats) ACIB15232_0975 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACIB15232_0976 PF17854 FtsK alpha domain ACIB15232_0976 PF09397 Ftsk gamma domain ACIB15232_0976 PF01580 FtsK/SpoIIIE family ACIB15232_0978 PF05525 Branched-chain amino acid transport protein ACIB15232_0979 PF03741 Integral membrane protein TerC family ACIB15232_0980 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_0980 PF00072 Response regulator receiver domain ACIB15232_0981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_0981 PF08447 PAS fold ACIB15232_0981 PF08448 PAS fold ACIB15232_0982 PF00490 Delta-aminolevulinic acid dehydratase ACIB15232_0983 PF00925 GTP cyclohydrolase II ACIB15232_0984 PF02527 rRNA small subunit methyltransferase G ACIB15232_0987 PF02092 Glycyl-tRNA synthetase beta subunit ACIB15232_0988 PF00589 Phage integrase family ACIB15232_0988 PF18644 Phage integrase SAM-like domain ACIB15232_0989 PF00925 GTP cyclohydrolase II ACIB15232_0989 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACIB15232_0990 PF00005 ABC transporter ACIB15232_0990 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACIB15232_0992 PF00591 Glycosyl transferase family, a/b domain ACIB15232_0992 PF02885 Glycosyl transferase family, helical bundle domain ACIB15232_0994 PF00764 Arginosuccinate synthase ACIB15232_0995 PF00501 AMP-binding enzyme ACIB15232_0995 PF13193 AMP-binding enzyme C-terminal domain ACIB15232_0996 PF03062 MBOAT, membrane-bound O-acyltransferase family ACIB15232_0998 PF00550 Phosphopantetheine attachment site ACIB15232_0999 PF00132 Bacterial transferase hexapeptide (six repeats) ACIB15232_1000 PF00005 ABC transporter ACIB15232_1003 PF13190 PDGLE domain ACIB15232_1003 PF01891 Cobalt uptake substrate-specific transmembrane region ACIB15232_1005 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ACIB15232_1006 PF00586 AIR synthase related protein, N-terminal domain ACIB15232_1006 PF02769 AIR synthase related protein, C-terminal domain ACIB15232_1008 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACIB15232_1008 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACIB15232_1009 PF01924 Hydrogenase formation hypA family ACIB15232_1010 PF01455 HupF/HypC family ACIB15232_1011 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACIB15232_1016 PF01750 Hydrogenase maturation protease ACIB15232_1017 PF01292 Prokaryotic cytochrome b561 ACIB15232_1018 PF00374 Nickel-dependent hydrogenase ACIB15232_1019 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACIB15232_1019 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACIB15232_1019 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ACIB15232_1021 PF08448 PAS fold ACIB15232_1021 PF08447 PAS fold ACIB15232_1021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1023 PF02132 RecR protein ACIB15232_1023 PF13662 Toprim domain ACIB15232_1024 PF01556 DnaJ C terminal domain ACIB15232_1024 PF00226 DnaJ domain ACIB15232_1024 PF00684 DnaJ central domain ACIB15232_1028 PF00753 Metallo-beta-lactamase superfamily ACIB15232_1029 PF00563 EAL domain ACIB15232_1029 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1029 PF03707 Bacterial signalling protein N terminal repeat ACIB15232_1029 PF13188 PAS domain ACIB15232_1030 PF01590 GAF domain ACIB15232_1030 PF00563 EAL domain ACIB15232_1030 PF00360 Phytochrome region ACIB15232_1030 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1031 PF00669 Bacterial flagellin N-terminal helical region ACIB15232_1031 PF00700 Bacterial flagellin C-terminal helical region ACIB15232_1031 PF07196 Flagellin hook IN motif ACIB15232_1031 PF00669 Bacterial flagellin N-terminal helical region ACIB15232_1031 PF00700 Bacterial flagellin C-terminal helical region ACIB15232_1031 PF07196 Flagellin hook IN motif ACIB15232_1032 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACIB15232_1032 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACIB15232_1032 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACIB15232_1032 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACIB15232_1033 PF00483 Nucleotidyl transferase ACIB15232_1034 PF00342 Phosphoglucose isomerase ACIB15232_1038 PF03372 Endonuclease/Exonuclease/phosphatase family ACIB15232_1039 PF08003 Protein of unknown function (DUF1698) ACIB15232_1040 PF01578 Cytochrome C assembly protein ACIB15232_1040 PF05140 ResB-like family ACIB15232_1041 PF01546 Peptidase family M20/M25/M40 ACIB15232_1041 PF07687 Peptidase dimerisation domain ACIB15232_1043 PF00488 MutS domain V ACIB15232_1043 PF01713 Smr domain ACIB15232_1045 PF00994 Probable molybdopterin binding domain ACIB15232_1047 PF00004 ATPase family associated with various cellular activities (AAA) ACIB15232_1047 PF17862 AAA+ lid domain ACIB15232_1047 PF06480 FtsH Extracellular ACIB15232_1047 PF01434 Peptidase family M41 ACIB15232_1048 PF04055 Radical SAM superfamily ACIB15232_1048 PF00919 Uncharacterized protein family UPF0004 ACIB15232_1050 PF01761 3-dehydroquinate synthase ACIB15232_1053 PF01432 Peptidase family M3 ACIB15232_1054 PF05175 Methyltransferase small domain ACIB15232_1054 PF17827 PrmC N-terminal domain ACIB15232_1055 PF06969 HemN C-terminal domain ACIB15232_1055 PF04055 Radical SAM superfamily ACIB15232_1056 PF00293 NUDIX domain ACIB15232_1057 PF00696 Amino acid kinase family ACIB15232_1057 PF01842 ACT domain ACIB15232_1057 PF13840 ACT domain ACIB15232_1060 PF00809 Pterin binding enzyme ACIB15232_1061 PF00571 CBS domain ACIB15232_1061 PF03471 Transporter associated domain ACIB15232_1061 PF01595 Cyclin M transmembrane N-terminal domain ACIB15232_1065 PF01593 Flavin containing amine oxidoreductase ACIB15232_1068 PF00106 short chain dehydrogenase ACIB15232_1069 PF01842 ACT domain ACIB15232_1069 PF02153 Prephenate dehydrogenase ACIB15232_1070 PF01103 Surface antigen ACIB15232_1070 PF07244 Surface antigen variable number repeat ACIB15232_1071 PF04055 Radical SAM superfamily ACIB15232_1072 PF05193 Peptidase M16 inactive domain ACIB15232_1073 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIB15232_1078 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ACIB15232_1080 PF01588 Putative tRNA binding domain ACIB15232_1080 PF00133 tRNA synthetases class I (I, L, M and V) ACIB15232_1080 PF09334 tRNA synthetases class I (M) ACIB15232_1083 PF01293 Phosphoenolpyruvate carboxykinase ACIB15232_1084 PF01339 CheB methylesterase ACIB15232_1084 PF00072 Response regulator receiver domain ACIB15232_1085 PF03975 CheD chemotactic sensory transduction ACIB15232_1086 PF01739 CheR methyltransferase, SAM binding domain ACIB15232_1086 PF03705 CheR methyltransferase, all-alpha domain ACIB15232_1087 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1087 PF01627 Hpt domain ACIB15232_1087 PF09078 CheY binding ACIB15232_1087 PF01584 CheW-like domain ACIB15232_1087 PF02895 Signal transducing histidine kinase, homodimeric domain ACIB15232_1088 PF00072 Response regulator receiver domain ACIB15232_1089 PF00575 S1 RNA binding domain ACIB15232_1089 PF00013 KH domain ACIB15232_1089 PF01138 3' exoribonuclease family, domain 1 ACIB15232_1089 PF03725 3' exoribonuclease family, domain 2 ACIB15232_1089 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACIB15232_1091 PF04453 LPS transport system D ACIB15232_1091 PF03968 OstA-like protein ACIB15232_1093 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACIB15232_1093 PF02843 Phosphoribosylglycinamide synthetase, C domain ACIB15232_1093 PF02844 Phosphoribosylglycinamide synthetase, N domain ACIB15232_1095 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACIB15232_1095 PF01926 50S ribosome-binding GTPase ACIB15232_1099 PF03971 Monomeric isocitrate dehydrogenase ACIB15232_1100 PF00056 lactate/malate dehydrogenase, NAD binding domain ACIB15232_1100 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACIB15232_1105 PF01266 FAD dependent oxidoreductase ACIB15232_1105 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ACIB15232_1106 PF00072 Response regulator receiver domain ACIB15232_1108 PF08448 PAS fold ACIB15232_1108 PF08447 PAS fold ACIB15232_1108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1109 PF00226 DnaJ domain ACIB15232_1109 PF01556 DnaJ C terminal domain ACIB15232_1110 PF13411 MerR HTH family regulatory protein ACIB15232_1114 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACIB15232_1114 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACIB15232_1115 PF04055 Radical SAM superfamily ACIB15232_1115 PF06969 HemN C-terminal domain ACIB15232_1116 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACIB15232_1117 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACIB15232_1118 PF02540 NAD synthase ACIB15232_1121 PF05099 Tellurite resistance protein TerB ACIB15232_1121 PF00226 DnaJ domain ACIB15232_1125 PF13382 Adenine deaminase C-terminal domain ACIB15232_1125 PF01979 Amidohydrolase family ACIB15232_1126 PF02416 mttA/Hcf106 family ACIB15232_1127 PF00902 Sec-independent protein translocase protein (TatC) ACIB15232_1128 PF02547 Queuosine biosynthesis protein ACIB15232_1129 PF13307 Helicase C-terminal domain ACIB15232_1129 PF00929 Exonuclease ACIB15232_1133 PF02754 Cysteine-rich domain ACIB15232_1133 PF13183 4Fe-4S dicluster domain ACIB15232_1133 PF02665 Nitrate reductase gamma subunit ACIB15232_1134 PF01790 Prolipoprotein diacylglyceryl transferase ACIB15232_1137 PF01367 5'-3' exonuclease, C-terminal SAM fold ACIB15232_1137 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACIB15232_1137 PF00476 DNA polymerase family A ACIB15232_1138 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1138 PF05230 MASE2 domain ACIB15232_1140 PF02348 Cytidylyltransferase ACIB15232_1143 PF01795 MraW methylase family ACIB15232_1145 PF00216 Bacterial DNA-binding protein ACIB15232_1147 PF02899 Phage integrase, N-terminal SAM-like domain ACIB15232_1147 PF00589 Phage integrase family ACIB15232_1150 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1150 PF00072 Response regulator receiver domain ACIB15232_1158 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACIB15232_1158 PF02142 MGS-like domain ACIB15232_1158 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIB15232_1159 PF00899 ThiF family ACIB15232_1160 PF02609 Exonuclease VII small subunit ACIB15232_1161 PF00561 alpha/beta hydrolase fold ACIB15232_1163 PF04143 Sulphur transport ACIB15232_1164 PF00091 Tubulin/FtsZ family, GTPase domain ACIB15232_1164 PF12327 FtsZ family, C-terminal domain ACIB15232_1165 PF02491 SHS2 domain inserted in FTSA ACIB15232_1169 PF03960 ArsC family ACIB15232_1170 PF00849 RNA pseudouridylate synthase ACIB15232_1170 PF01479 S4 domain ACIB15232_1172 PF13614 AAA domain ACIB15232_1173 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACIB15232_1174 PF05971 RNA methyltransferase ACIB15232_1175 PF03737 Aldolase/RraA ACIB15232_1176 PF00872 Transposase, Mutator family ACIB15232_1178 PF13476 AAA domain ACIB15232_1183 PF01145 SPFH domain / Band 7 family ACIB15232_1183 PF16200 C-terminal region of band_7 ACIB15232_1186 PF00072 Response regulator receiver domain ACIB15232_1186 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_1189 PF00588 SpoU rRNA Methylase family ACIB15232_1190 PF00551 Formyl transferase ACIB15232_1190 PF01842 ACT domain ACIB15232_1191 PF02578 Multi-copper polyphenol oxidoreductase laccase ACIB15232_1193 PF08501 Shikimate dehydrogenase substrate binding domain ACIB15232_1224 PF12833 Helix-turn-helix domain ACIB15232_1224 PF02311 AraC-like ligand binding domain ACIB15232_1225 PF00682 HMGL-like ACIB15232_1225 PF08502 LeuA allosteric (dimerisation) domain ACIB15232_1226 PF00239 Resolvase, N terminal domain ACIB15232_1226 PF02796 Helix-turn-helix domain of resolvase ACIB15232_1229 PF13614 AAA domain ACIB15232_1231 PF11867 Domain of unknown function (DUF3387) ACIB15232_1231 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACIB15232_1231 PF18766 SWI2/SNF2 ATPase ACIB15232_1235 PF01420 Type I restriction modification DNA specificity domain ACIB15232_1236 PF02384 N-6 DNA Methylase ACIB15232_1236 PF12161 HsdM N-terminal domain ACIB15232_1238 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1239 PF01113 Dihydrodipicolinate reductase, N-terminus ACIB15232_1239 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ACIB15232_1240 PF00672 HAMP domain ACIB15232_1240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_1240 PF02203 Tar ligand binding domain homologue ACIB15232_1244 PF00270 DEAD/DEAH box helicase ACIB15232_1244 PF00271 Helicase conserved C-terminal domain ACIB15232_1245 PF00248 Aldo/keto reductase family ACIB15232_1249 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACIB15232_1249 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACIB15232_1249 PF14579 Helix-hairpin-helix motif ACIB15232_1249 PF02811 PHP domain ACIB15232_1249 PF00929 Exonuclease ACIB15232_1249 PF14480 DNA polymerase III polC-type N-terminus I ACIB15232_1249 PF11490 DNA polymerase III polC-type N-terminus II ACIB15232_1250 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACIB15232_1251 PF00834 Ribulose-phosphate 3 epimerase family ACIB15232_1252 PF02253 Phospholipase A1 ACIB15232_1254 PF00293 NUDIX domain ACIB15232_1255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1256 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_1256 PF00072 Response regulator receiver domain ACIB15232_1257 PF04461 Protein of unknown function (DUF520) ACIB15232_1258 PF04241 Protein of unknown function (DUF423) ACIB15232_1259 PF00156 Phosphoribosyl transferase domain ACIB15232_1265 PF00072 Response regulator receiver domain ACIB15232_1265 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_1266 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_1266 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACIB15232_1266 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1268 PF01032 FecCD transport family ACIB15232_1269 PF00005 ABC transporter ACIB15232_1270 PF01497 Periplasmic binding protein ACIB15232_1271 PF07715 TonB-dependent Receptor Plug Domain ACIB15232_1271 PF00593 TonB dependent receptor ACIB15232_1275 PF13419 Haloacid dehalogenase-like hydrolase ACIB15232_1277 PF03548 Outer membrane lipoprotein carrier protein LolA ACIB15232_1278 PF07516 SecA Wing and Scaffold domain ACIB15232_1278 PF01043 SecA preprotein cross-linking domain ACIB15232_1278 PF07517 SecA DEAD-like domain ACIB15232_1278 PF02810 SEC-C motif ACIB15232_1278 PF00271 Helicase conserved C-terminal domain ACIB15232_1279 PF02687 FtsX-like permease family ACIB15232_1279 PF12704 MacB-like periplasmic core domain ACIB15232_1283 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1284 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_1284 PF00072 Response regulator receiver domain ACIB15232_1286 PF00664 ABC transporter transmembrane region ACIB15232_1286 PF00005 ABC transporter ACIB15232_1288 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1288 PF03707 Bacterial signalling protein N terminal repeat ACIB15232_1288 PF00563 EAL domain ACIB15232_1290 PF08212 Lipocalin-like domain ACIB15232_1291 PF00762 Ferrochelatase ACIB15232_1292 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ACIB15232_1295 PF03109 ABC1 family ACIB15232_1297 PF12792 CSS motif domain associated with EAL ACIB15232_1297 PF00563 EAL domain ACIB15232_1298 PF00072 Response regulator receiver domain ACIB15232_1298 PF04397 LytTr DNA-binding domain ACIB15232_1299 PF06580 Histidine kinase ACIB15232_1299 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1299 PF13492 GAF domain ACIB15232_1299 PF07694 5TMR of 5TMR-LYT ACIB15232_1300 PF01593 Flavin containing amine oxidoreductase ACIB15232_1301 PF03441 FAD binding domain of DNA photolyase ACIB15232_1301 PF00875 DNA photolyase ACIB15232_1303 PF08338 Domain of unknown function (DUF1731) ACIB15232_1303 PF01370 NAD dependent epimerase/dehydratase family ACIB15232_1304 PF00933 Glycosyl hydrolase family 3 N terminal domain ACIB15232_1304 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACIB15232_1305 PF00684 DnaJ central domain ACIB15232_1305 PF01556 DnaJ C terminal domain ACIB15232_1305 PF00226 DnaJ domain ACIB15232_1306 PF01556 DnaJ C terminal domain ACIB15232_1306 PF00684 DnaJ central domain ACIB15232_1306 PF00226 DnaJ domain ACIB15232_1308 PF03061 Thioesterase superfamily ACIB15232_1309 PF00583 Acetyltransferase (GNAT) family ACIB15232_1310 PF01926 50S ribosome-binding GTPase ACIB15232_1314 PF00475 Imidazoleglycerol-phosphate dehydratase ACIB15232_1315 PF05036 Sporulation related domain ACIB15232_1315 PF03330 Lytic transglycolase ACIB15232_1316 PF01464 Transglycosylase SLT domain ACIB15232_1316 PF01476 LysM domain ACIB15232_1317 PF01026 TatD related DNase ACIB15232_1319 PF07724 AAA domain (Cdc48 subfamily) ACIB15232_1319 PF10431 C-terminal, D2-small domain, of ClpB protein ACIB15232_1320 PF00227 Proteasome subunit ACIB15232_1321 PF03948 Ribosomal protein L9, C-terminal domain ACIB15232_1321 PF01281 Ribosomal protein L9, N-terminal domain ACIB15232_1323 PF02441 Flavoprotein ACIB15232_1324 PF01467 Cytidylyltransferase-like ACIB15232_1325 PF02223 Thymidylate kinase ACIB15232_1326 PF03129 Anticodon binding domain ACIB15232_1326 PF13393 Histidyl-tRNA synthetase ACIB15232_1327 PF17944 Arginine decarboxylase C-terminal helical extension ACIB15232_1327 PF17810 Arginine decarboxylase helical bundle domain ACIB15232_1327 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACIB15232_1328 PF06426 Serine acetyltransferase, N-terminal ACIB15232_1328 PF00132 Bacterial transferase hexapeptide (six repeats) ACIB15232_1329 PF01925 Sulfite exporter TauE/SafE ACIB15232_1332 PF00005 ABC transporter ACIB15232_1332 PF16326 ABC transporter C-terminal domain ACIB15232_1332 PF12848 ABC transporter ACIB15232_1334 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1334 PF17158 Membrane-associated sensor, integral membrane domain ACIB15232_1335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1336 PF00072 Response regulator receiver domain ACIB15232_1336 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_1338 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACIB15232_1340 PF00106 short chain dehydrogenase ACIB15232_1341 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_1341 PF12911 N-terminal TM domain of oligopeptide transport permease C ACIB15232_1343 PF00013 KH domain ACIB15232_1343 PF12072 Domain of unknown function (DUF3552) ACIB15232_1343 PF01966 HD domain ACIB15232_1344 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACIB15232_1345 PF00578 AhpC/TSA family ACIB15232_1346 PF00448 SRP54-type protein, GTPase domain ACIB15232_1348 PF00563 EAL domain ACIB15232_1348 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1348 PF03707 Bacterial signalling protein N terminal repeat ACIB15232_1349 PF00034 Cytochrome c ACIB15232_1349 PF03150 Di-haem cytochrome c peroxidase ACIB15232_1354 PF18073 Rubredoxin metal binding domain ACIB15232_1356 PF02130 Uncharacterized protein family UPF0054 ACIB15232_1357 PF01475 Ferric uptake regulator family ACIB15232_1359 PF03023 Lipid II flippase MurJ ACIB15232_1360 PF00664 ABC transporter transmembrane region ACIB15232_1360 PF00005 ABC transporter ACIB15232_1361 PF01180 Dihydroorotate dehydrogenase ACIB15232_1363 PF00701 Dihydrodipicolinate synthetase family ACIB15232_1365 PF01066 CDP-alcohol phosphatidyltransferase ACIB15232_1366 PF17820 PDZ domain ACIB15232_1366 PF02163 Peptidase family M50 ACIB15232_1367 PF01168 Alanine racemase, N-terminal domain ACIB15232_1368 PF01361 Tautomerase enzyme ACIB15232_1370 PF00218 Indole-3-glycerol phosphate synthase ACIB15232_1372 PF03692 Putative zinc- or iron-chelating domain ACIB15232_1373 PF05175 Methyltransferase small domain ACIB15232_1375 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACIB15232_1375 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ACIB15232_1375 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ACIB15232_1376 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACIB15232_1378 PF00465 Iron-containing alcohol dehydrogenase ACIB15232_1379 PF00155 Aminotransferase class I and II ACIB15232_1382 PF05191 Adenylate kinase, active site lid ACIB15232_1384 PF02938 GAD domain ACIB15232_1384 PF00152 tRNA synthetases class II (D, K and N) ACIB15232_1384 PF01336 OB-fold nucleic acid binding domain ACIB15232_1386 PF03167 Uracil DNA glycosylase superfamily ACIB15232_1387 PF01176 Translation initiation factor 1A / IF-1 ACIB15232_1388 PF00557 Metallopeptidase family M24 ACIB15232_1389 PF00344 SecY translocase ACIB15232_1390 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACIB15232_1391 PF00333 Ribosomal protein S5, N-terminal domain ACIB15232_1391 PF03719 Ribosomal protein S5, C-terminal domain ACIB15232_1392 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACIB15232_1393 PF00347 Ribosomal protein L6 ACIB15232_1394 PF00410 Ribosomal protein S8 ACIB15232_1395 PF00253 Ribosomal protein S14p/S29e ACIB15232_1396 PF00281 Ribosomal protein L5 ACIB15232_1396 PF00673 ribosomal L5P family C-terminus ACIB15232_1397 PF00467 KOW motif ACIB15232_1397 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACIB15232_1398 PF00238 Ribosomal protein L14p/L23e ACIB15232_1399 PF00366 Ribosomal protein S17 ACIB15232_1400 PF00831 Ribosomal L29 protein ACIB15232_1401 PF00252 Ribosomal protein L16p/L10e ACIB15232_1402 PF07650 KH domain ACIB15232_1402 PF00189 Ribosomal protein S3, C-terminal domain ACIB15232_1403 PF00237 Ribosomal protein L22p/L17e ACIB15232_1404 PF00203 Ribosomal protein S19 ACIB15232_1405 PF00181 Ribosomal Proteins L2, RNA binding domain ACIB15232_1405 PF03947 Ribosomal Proteins L2, C-terminal domain ACIB15232_1406 PF00276 Ribosomal protein L23 ACIB15232_1407 PF00573 Ribosomal protein L4/L1 family ACIB15232_1408 PF00297 Ribosomal protein L3 ACIB15232_1409 PF00338 Ribosomal protein S10p/S20e ACIB15232_1412 PF02875 Mur ligase family, glutamate ligase domain ACIB15232_1412 PF01225 Mur ligase family, catalytic domain ACIB15232_1412 PF08245 Mur ligase middle domain ACIB15232_1413 PF00561 alpha/beta hydrolase fold ACIB15232_1414 PF07478 D-ala D-ala ligase C-terminus ACIB15232_1414 PF01820 D-ala D-ala ligase N-terminus ACIB15232_1415 PF07499 RuvA, C-terminal domain ACIB15232_1415 PF01330 RuvA N terminal domain ACIB15232_1416 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_1416 PF02203 Tar ligand binding domain homologue ACIB15232_1416 PF00672 HAMP domain ACIB15232_1419 PF01142 tRNA pseudouridine synthase D (TruD) ACIB15232_1420 PF00586 AIR synthase related protein, N-terminal domain ACIB15232_1420 PF02769 AIR synthase related protein, C-terminal domain ACIB15232_1423 PF06865 Pyrimidine/purine nucleoside phosphorylase ACIB15232_1427 PF01926 50S ribosome-binding GTPase ACIB15232_1427 PF06071 Protein of unknown function (DUF933) ACIB15232_1429 PF13407 Periplasmic binding protein domain ACIB15232_1430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1430 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_1430 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACIB15232_1431 PF13722 5TM C-terminal transporter carbon starvation CstA ACIB15232_1431 PF02554 Carbon starvation protein CstA ACIB15232_1439 PF17158 Membrane-associated sensor, integral membrane domain ACIB15232_1439 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1440 PF02687 FtsX-like permease family ACIB15232_1440 PF00005 ABC transporter ACIB15232_1440 PF12704 MacB-like periplasmic core domain ACIB15232_1441 PF00005 ABC transporter ACIB15232_1441 PF02687 FtsX-like permease family ACIB15232_1441 PF12704 MacB-like periplasmic core domain ACIB15232_1444 PF01618 MotA/TolQ/ExbB proton channel family ACIB15232_1445 PF02472 Biopolymer transport protein ExbD/TolR ACIB15232_1447 PF00883 Cytosol aminopeptidase family, catalytic domain ACIB15232_1447 PF02789 Cytosol aminopeptidase family, N-terminal domain ACIB15232_1449 PF00291 Pyridoxal-phosphate dependent enzyme ACIB15232_1450 PF00156 Phosphoribosyl transferase domain ACIB15232_1451 PF08334 Type II secretion system (T2SS), protein G ACIB15232_1451 PF07963 Prokaryotic N-terminal methylation motif ACIB15232_1452 PF00772 DnaB-like helicase N terminal domain ACIB15232_1452 PF03796 DnaB-like helicase C terminal domain ACIB15232_1453 PF04551 GcpE protein ACIB15232_1454 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1454 PF08447 PAS fold ACIB15232_1454 PF08448 PAS fold ACIB15232_1456 PF00152 tRNA synthetases class II (D, K and N) ACIB15232_1456 PF01336 OB-fold nucleic acid binding domain ACIB15232_1457 PF00464 Serine hydroxymethyltransferase ACIB15232_1459 PF04715 Anthranilate synthase component I, N terminal region ACIB15232_1459 PF00425 chorismate binding enzyme ACIB15232_1460 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ACIB15232_1461 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ACIB15232_1463 PF00696 Amino acid kinase family ACIB15232_1464 PF01192 RNA polymerase Rpb6 ACIB15232_1465 PF02824 TGS domain ACIB15232_1465 PF13291 ACT domain ACIB15232_1465 PF04607 Region found in RelA / SpoT proteins ACIB15232_1466 PF01479 S4 domain ACIB15232_1466 PF00579 tRNA synthetases class I (W and Y) ACIB15232_1471 PF01195 Peptidyl-tRNA hydrolase ACIB15232_1472 PF01386 Ribosomal L25p family ACIB15232_1472 PF14693 Ribosomal protein TL5, C-terminal domain ACIB15232_1473 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACIB15232_1473 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACIB15232_1474 PF10502 Signal peptidase, peptidase S26 ACIB15232_1475 PF02502 Ribose/Galactose Isomerase ACIB15232_1479 PF00633 Helix-hairpin-helix motif ACIB15232_1479 PF00730 HhH-GPD superfamily base excision DNA repair protein ACIB15232_1479 PF10576 Iron-sulfur binding domain of endonuclease III ACIB15232_1480 PF00271 Helicase conserved C-terminal domain ACIB15232_1480 PF04851 Type III restriction enzyme, res subunit ACIB15232_1480 PF02151 UvrB/uvrC motif ACIB15232_1480 PF12344 Ultra-violet resistance protein B ACIB15232_1480 PF17757 UvrB interaction domain ACIB15232_1482 PF01272 Transcription elongation factor, GreA/GreB, C-term ACIB15232_1482 PF03449 Transcription elongation factor, N-terminal ACIB15232_1483 PF00899 ThiF family ACIB15232_1484 PF01584 CheW-like domain ACIB15232_1484 PF00072 Response regulator receiver domain ACIB15232_1485 PF14698 Argininosuccinate lyase C-terminal ACIB15232_1485 PF00206 Lyase ACIB15232_1486 PF07694 5TMR of 5TMR-LYT ACIB15232_1486 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1487 PF01769 Divalent cation transporter ACIB15232_1487 PF00571 CBS domain ACIB15232_1487 PF03448 MgtE intracellular N domain ACIB15232_1488 PF01592 NifU-like N terminal domain ACIB15232_1488 PF04324 BFD-like [2Fe-2S] binding domain ACIB15232_1488 PF01106 NifU-like domain ACIB15232_1489 PF01458 Uncharacterized protein family (UPF0051) ACIB15232_1490 PF00005 ABC transporter ACIB15232_1492 PF00266 Aminotransferase class-V ACIB15232_1493 PF02657 Fe-S metabolism associated domain ACIB15232_1494 PF01883 Iron-sulfur cluster assembly protein ACIB15232_1495 PF02785 Biotin carboxylase C-terminal domain ACIB15232_1495 PF00289 Biotin carboxylase, N-terminal domain ACIB15232_1495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIB15232_1497 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_1497 PF00672 HAMP domain ACIB15232_1497 PF02203 Tar ligand binding domain homologue ACIB15232_1498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_1498 PF08447 PAS fold ACIB15232_1499 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_1499 PF13426 PAS domain ACIB15232_1499 PF08447 PAS fold ACIB15232_1501 PF10414 Sirohaem synthase dimerisation region ACIB15232_1501 PF14824 Sirohaem biosynthesis protein central ACIB15232_1501 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACIB15232_1503 PF00004 ATPase family associated with various cellular activities (AAA) ACIB15232_1503 PF05362 Lon protease (S16) C-terminal proteolytic domain ACIB15232_1503 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACIB15232_1504 PF13525 Outer membrane lipoprotein ACIB15232_1505 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACIB15232_1505 PF03807 NADP oxidoreductase coenzyme F420-dependent ACIB15232_1509 PF01725 Ham1 family ACIB15232_1510 PF07690 Major Facilitator Superfamily ACIB15232_1513 PF02698 DUF218 domain ACIB15232_1514 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACIB15232_1514 PF00753 Metallo-beta-lactamase superfamily ACIB15232_1517 PF08264 Anticodon-binding domain of tRNA ACIB15232_1517 PF00133 tRNA synthetases class I (I, L, M and V) ACIB15232_1517 PF10458 Valyl tRNA synthetase tRNA binding arm ACIB15232_1518 PF14824 Sirohaem biosynthesis protein central ACIB15232_1518 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACIB15232_1518 PF10414 Sirohaem synthase dimerisation region ACIB15232_1520 PF00710 Asparaginase, N-terminal ACIB15232_1520 PF17763 Glutaminase/Asparaginase C-terminal domain ACIB15232_1521 PF10415 Fumarase C C-terminus ACIB15232_1521 PF00206 Lyase ACIB15232_1522 PF01048 Phosphorylase superfamily ACIB15232_1523 PF00698 Acyl transferase domain ACIB15232_1524 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIB15232_1526 PF00691 OmpA family ACIB15232_1526 PF01389 OmpA-like transmembrane domain ACIB15232_1527 PF04052 TolB amino-terminal domain ACIB15232_1529 PF02472 Biopolymer transport protein ExbD/TolR ACIB15232_1530 PF01618 MotA/TolQ/ExbB proton channel family ACIB15232_1531 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACIB15232_1532 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIB15232_1532 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACIB15232_1533 PF00231 ATP synthase ACIB15232_1534 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIB15232_1534 PF00306 ATP synthase alpha/beta chain, C terminal domain ACIB15232_1534 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACIB15232_1535 PF00213 ATP synthase delta (OSCP) subunit ACIB15232_1536 PF00430 ATP synthase B/B' CF(0) ACIB15232_1538 PF17762 HTH domain found in ParB protein ACIB15232_1538 PF02195 ParB-like nuclease domain ACIB15232_1539 PF13614 AAA domain ACIB15232_1542 PF02911 Formyl transferase, C-terminal domain ACIB15232_1542 PF00551 Formyl transferase ACIB15232_1543 PF00696 Amino acid kinase family ACIB15232_1544 PF01018 GTP1/OBG ACIB15232_1544 PF01926 50S ribosome-binding GTPase ACIB15232_1545 PF01016 Ribosomal L27 protein ACIB15232_1546 PF00829 Ribosomal prokaryotic L21 protein ACIB15232_1547 PF16730 DnaG-primase C-terminal, helicase-binding domain ACIB15232_1547 PF01807 CHC2 zinc finger ACIB15232_1547 PF13662 Toprim domain ACIB15232_1547 PF08275 DNA primase catalytic core, N-terminal domain ACIB15232_1549 PF14622 Ribonuclease-III-like ACIB15232_1549 PF00035 Double-stranded RNA binding motif ACIB15232_1550 PF01264 Chorismate synthase ACIB15232_1552 PF00884 Sulfatase ACIB15232_1553 PF01435 Peptidase family M48 ACIB15232_1555 PF00300 Histidine phosphatase superfamily (branch 1) ACIB15232_1557 PF12631 MnmE helical domain ACIB15232_1557 PF10396 GTP-binding protein TrmE N-terminus ACIB15232_1557 PF01926 50S ribosome-binding GTPase ACIB15232_1559 PF02096 60Kd inner membrane protein ACIB15232_1559 PF14849 YidC periplasmic domain ACIB15232_1560 PF01809 Putative membrane protein insertion efficiency factor ACIB15232_1561 PF00825 Ribonuclease P ACIB15232_1562 PF00468 Ribosomal protein L34 ACIB15232_1563 PF02861 Clp amino terminal domain, pathogenicity island component ACIB15232_1563 PF00004 ATPase family associated with various cellular activities (AAA) ACIB15232_1563 PF17871 AAA lid domain ACIB15232_1563 PF10431 C-terminal, D2-small domain, of ClpB protein ACIB15232_1563 PF07724 AAA domain (Cdc48 subfamily) ACIB15232_1564 PF01351 Ribonuclease HII ACIB15232_1565 PF03976 Polyphosphate kinase 2 (PPK2) ACIB15232_1568 PF01625 Peptide methionine sulfoxide reductase ACIB15232_1570 PF00293 NUDIX domain ACIB15232_1571 PF00202 Aminotransferase class-III ACIB15232_1572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1572 PF08447 PAS fold ACIB15232_1572 PF08448 PAS fold ACIB15232_1573 PF01808 AICARFT/IMPCHase bienzyme ACIB15232_1573 PF02142 MGS-like domain ACIB15232_1574 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACIB15232_1574 PF02769 AIR synthase related protein, C-terminal domain ACIB15232_1574 PF00586 AIR synthase related protein, N-terminal domain ACIB15232_1576 PF01476 LysM domain ACIB15232_1576 PF08525 Opacity-associated protein A N-terminal motif ACIB15232_1576 PF01551 Peptidase family M23 ACIB15232_1577 PF01227 GTP cyclohydrolase I ACIB15232_1578 PF01544 CorA-like Mg2+ transporter protein ACIB15232_1582 PF01926 50S ribosome-binding GTPase ACIB15232_1582 PF07650 KH domain ACIB15232_1585 PF01053 Cys/Met metabolism PLP-dependent enzyme ACIB15232_1586 PF01053 Cys/Met metabolism PLP-dependent enzyme ACIB15232_1590 PF06965 Na+/H+ antiporter 1 ACIB15232_1591 PF03150 Di-haem cytochrome c peroxidase ACIB15232_1592 PF04116 Fatty acid hydroxylase superfamily ACIB15232_1597 PF00137 ATP synthase subunit C ACIB15232_1599 PF08447 PAS fold ACIB15232_1599 PF08448 PAS fold ACIB15232_1599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1603 PF00171 Aldehyde dehydrogenase family ACIB15232_1605 PF13277 YmdB-like protein ACIB15232_1606 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_1606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1607 PF00709 Adenylosuccinate synthetase ACIB15232_1608 PF00072 Response regulator receiver domain ACIB15232_1608 PF08769 Sporulation initiation factor Spo0A C terminal ACIB15232_1609 PF02743 Cache domain ACIB15232_1609 PF00672 HAMP domain ACIB15232_1609 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_1612 PF00072 Response regulator receiver domain ACIB15232_1612 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_1614 PF01590 GAF domain ACIB15232_1614 PF00360 Phytochrome region ACIB15232_1614 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1614 PF00563 EAL domain ACIB15232_1616 PF04357 TamB, inner membrane protein subunit of TAM complex ACIB15232_1619 PF17757 UvrB interaction domain ACIB15232_1619 PF03461 TRCF domain ACIB15232_1619 PF00271 Helicase conserved C-terminal domain ACIB15232_1619 PF00270 DEAD/DEAH box helicase ACIB15232_1619 PF02559 CarD-like/TRCF domain ACIB15232_1626 PF02875 Mur ligase family, glutamate ligase domain ACIB15232_1626 PF08245 Mur ligase middle domain ACIB15232_1628 PF00133 tRNA synthetases class I (I, L, M and V) ACIB15232_1628 PF13603 Leucyl-tRNA synthetase, Domain 2 ACIB15232_1628 PF09334 tRNA synthetases class I (M) ACIB15232_1630 PF01618 MotA/TolQ/ExbB proton channel family ACIB15232_1631 PF13677 Membrane MotB of proton-channel complex MotA/MotB ACIB15232_1631 PF00691 OmpA family ACIB15232_1634 PF07549 SecD/SecF GG Motif ACIB15232_1634 PF02355 Protein export membrane protein ACIB15232_1635 PF02355 Protein export membrane protein ACIB15232_1636 PF02699 Preprotein translocase subunit ACIB15232_1640 PF01743 Poly A polymerase head domain ACIB15232_1640 PF12626 Polymerase A arginine-rich C-terminus ACIB15232_1640 PF12627 Probable RNA and SrmB- binding site of polymerase A ACIB15232_1641 PF00924 Mechanosensitive ion channel ACIB15232_1641 PF05552 Conserved TM helix ACIB15232_1642 PF03129 Anticodon binding domain ACIB15232_1642 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIB15232_1642 PF04073 Aminoacyl-tRNA editing domain ACIB15232_1643 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACIB15232_1643 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACIB15232_1643 PF01488 Shikimate / quinate 5-dehydrogenase ACIB15232_1644 PF00348 Polyprenyl synthetase ACIB15232_1646 PF00815 Histidinol dehydrogenase ACIB15232_1647 PF01202 Shikimate kinase ACIB15232_1649 PF01618 MotA/TolQ/ExbB proton channel family ACIB15232_1650 PF02472 Biopolymer transport protein ExbD/TolR ACIB15232_1651 PF01116 Fructose-bisphosphate aldolase class-II ACIB15232_1652 PF00639 PPIC-type PPIASE domain ACIB15232_1653 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_1653 PF00072 Response regulator receiver domain ACIB15232_1654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1654 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_1655 PF13380 CoA binding domain ACIB15232_1658 PF00312 Ribosomal protein S15 ACIB15232_1659 PF06463 Molybdenum Cofactor Synthesis C ACIB15232_1659 PF04055 Radical SAM superfamily ACIB15232_1660 PF02885 Glycosyl transferase family, helical bundle domain ACIB15232_1660 PF00591 Glycosyl transferase family, a/b domain ACIB15232_1661 PF02371 Transposase IS116/IS110/IS902 family ACIB15232_1661 PF01548 Transposase ACIB15232_1664 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACIB15232_1664 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACIB15232_1664 PF00384 Molybdopterin oxidoreductase ACIB15232_1664 PF01568 Molydopterin dinucleotide binding domain ACIB15232_1665 PF12838 4Fe-4S dicluster domain ACIB15232_1665 PF12800 4Fe-4S binding domain ACIB15232_1666 PF00037 4Fe-4S binding domain ACIB15232_1666 PF12801 4Fe-4S binding domain ACIB15232_1667 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ACIB15232_1671 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_1671 PF08447 PAS fold ACIB15232_1672 PF00563 EAL domain ACIB15232_1672 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_1672 PF08448 PAS fold ACIB15232_1675 PF02403 Seryl-tRNA synthetase N-terminal domain ACIB15232_1675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIB15232_1676 PF00579 tRNA synthetases class I (W and Y) ACIB15232_1677 PF06977 SdiA-regulated ACIB15232_1679 PF01634 ATP phosphoribosyltransferase ACIB15232_1680 PF03309 Type III pantothenate kinase ACIB15232_1682 PF12821 Threonine/Serine exporter, ThrE ACIB15232_1682 PF06738 Putative threonine/serine exporter ACIB15232_1683 PF06738 Putative threonine/serine exporter ACIB15232_1683 PF12821 Threonine/Serine exporter, ThrE ACIB15232_1684 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ACIB15232_1685 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACIB15232_1686 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACIB15232_1687 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACIB15232_1687 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACIB15232_1689 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACIB15232_1689 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACIB15232_1689 PF10531 SLBB domain ACIB15232_1690 PF00285 Citrate synthase, C-terminal domain ACIB15232_1691 PF00384 Molybdopterin oxidoreductase ACIB15232_1691 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACIB15232_1691 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ACIB15232_1692 PF00146 NADH dehydrogenase ACIB15232_1693 PF12838 4Fe-4S dicluster domain ACIB15232_1694 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACIB15232_1695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACIB15232_1696 PF00361 Proton-conducting membrane transporter ACIB15232_1696 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACIB15232_1697 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACIB15232_1697 PF00361 Proton-conducting membrane transporter ACIB15232_1698 PF00361 Proton-conducting membrane transporter ACIB15232_1699 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACIB15232_1700 PF00890 FAD binding domain ACIB15232_1700 PF02910 Fumarate reductase flavoprotein C-term ACIB15232_1701 PF13183 4Fe-4S dicluster domain ACIB15232_1701 PF13085 2Fe-2S iron-sulfur cluster binding domain ACIB15232_1702 PF00350 Dynamin family ACIB15232_1703 PF00350 Dynamin family ACIB15232_1704 PF03831 PhnA domain ACIB15232_1704 PF08274 PhnA Zinc-Ribbon ACIB15232_1709 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACIB15232_1709 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACIB15232_1712 PF00285 Citrate synthase, C-terminal domain ACIB15232_1713 PF00330 Aconitase family (aconitate hydratase) ACIB15232_1713 PF00694 Aconitase C-terminal domain ACIB15232_1714 PF04303 PrpF protein ACIB15232_1715 PF00857 Isochorismatase family ACIB15232_1716 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACIB15232_1716 PF03900 Porphobilinogen deaminase, C-terminal domain ACIB15232_1718 PF12169 DNA polymerase III subunits gamma and tau domain III ACIB15232_1718 PF12170 DNA polymerase III tau subunit V interacting with alpha ACIB15232_1719 PF01177 Asp/Glu/Hydantoin racemase ACIB15232_1720 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACIB15232_1720 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACIB15232_1721 PF07497 Rho termination factor, RNA-binding domain ACIB15232_1721 PF07498 Rho termination factor, N-terminal domain ACIB15232_1721 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIB15232_1722 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACIB15232_1722 PF00578 AhpC/TSA family ACIB15232_1724 PF00334 Nucleoside diphosphate kinase ACIB15232_1726 PF01783 Ribosomal L32p protein family ACIB15232_1727 PF02504 Fatty acid synthesis protein ACIB15232_1728 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACIB15232_1728 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACIB15232_1732 PF00425 chorismate binding enzyme ACIB15232_1733 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACIB15232_1733 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACIB15232_1735 PF05538 Campylobacter major outer membrane protein ACIB15232_1736 PF02154 Flagellar motor switch protein FliM ACIB15232_1736 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACIB15232_1737 PF02119 Flagellar P-ring protein ACIB15232_1739 PF01313 Bacterial export proteins, family 3 ACIB15232_1744 PF02107 Flagellar L-ring protein ACIB15232_1746 PF02465 Flagellar hook-associated protein 2 N-terminus ACIB15232_1746 PF07196 Flagellin hook IN motif ACIB15232_1746 PF07195 Flagellar hook-associated protein 2 C-terminus ACIB15232_1747 PF02561 Flagellar protein FliS ACIB15232_1749 PF04055 Radical SAM superfamily ACIB15232_1751 PF00484 Carbonic anhydrase ACIB15232_1752 PF00155 Aminotransferase class I and II ACIB15232_1757 PF00691 OmpA family ACIB15232_1757 PF00223 Photosystem I psaA/psaB protein ACIB15232_1759 PF00391 PEP-utilising enzyme, mobile domain ACIB15232_1759 PF00224 Pyruvate kinase, barrel domain ACIB15232_1759 PF02887 Pyruvate kinase, alpha/beta domain ACIB15232_1761 PF01975 Survival protein SurE ACIB15232_1762 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACIB15232_1762 PF14579 Helix-hairpin-helix motif ACIB15232_1762 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACIB15232_1762 PF02811 PHP domain ACIB15232_1766 PF01368 DHH family ACIB15232_1766 PF02272 DHHA1 domain ACIB15232_1766 PF17768 RecJ OB domain ACIB15232_1766 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ACIB15232_1767 PF06418 CTP synthase N-terminus ACIB15232_1767 PF00117 Glutamine amidotransferase class-I ACIB15232_1768 PF13746 4Fe-4S dicluster domain ACIB15232_1768 PF12801 4Fe-4S binding domain ACIB15232_1768 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ACIB15232_1770 PF00202 Aminotransferase class-III ACIB15232_1772 PF02660 Glycerol-3-phosphate acyltransferase ACIB15232_1773 PF02445 Quinolinate synthetase A protein ACIB15232_1774 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACIB15232_1774 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACIB15232_1775 PF02272 DHHA1 domain ACIB15232_1775 PF01368 DHH family ACIB15232_1777 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACIB15232_1779 PF08544 GHMP kinases C terminal ACIB15232_1779 PF00288 GHMP kinases N terminal domain ACIB15232_1781 PF00009 Elongation factor Tu GTP binding domain ACIB15232_1781 PF11987 Translation-initiation factor 2 ACIB15232_1781 PF04760 Translation initiation factor IF-2, N-terminal region ACIB15232_1782 PF02033 Ribosome-binding factor A ACIB15232_1783 PF02576 RimP N-terminal domain ACIB15232_1784 PF01872 RibD C-terminal domain ACIB15232_1784 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACIB15232_1786 PF04028 Domain of unknown function (DUF374) ACIB15232_1787 PF04055 Radical SAM superfamily ACIB15232_1787 PF00919 Uncharacterized protein family UPF0004 ACIB15232_1787 PF01938 TRAM domain ACIB15232_1789 PF08529 NusA N-terminal domain ACIB15232_1789 PF13184 NusA-like KH domain ACIB15232_1790 PF09190 DALR domain ACIB15232_1790 PF01406 tRNA synthetases class I (C) catalytic domain ACIB15232_1791 PF01084 Ribosomal protein S18 ACIB15232_1792 PF00436 Single-strand binding protein family ACIB15232_1793 PF01250 Ribosomal protein S6 ACIB15232_1796 PF17876 Cold shock domain ACIB15232_1796 PF08461 Ribonuclease R winged-helix domain ACIB15232_1796 PF08206 Ribonuclease B OB domain ACIB15232_1796 PF00773 RNB domain ACIB15232_1796 PF00575 S1 RNA binding domain ACIB15232_1797 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACIB15232_1797 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACIB15232_1799 PF02875 Mur ligase family, glutamate ligase domain ACIB15232_1799 PF08245 Mur ligase middle domain ACIB15232_1799 PF01225 Mur ligase family, catalytic domain ACIB15232_1802 PF01702 Queuine tRNA-ribosyltransferase ACIB15232_1803 PF02686 Glu-tRNAGln amidotransferase C subunit ACIB15232_1804 PF03960 ArsC family ACIB15232_1805 PF03502 Nucleoside-specific channel-forming protein, Tsx ACIB15232_1806 PF01474 Class-II DAHP synthetase family ACIB15232_1807 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACIB15232_1810 PF03652 Holliday junction resolvase ACIB15232_1813 PF01648 4'-phosphopantetheinyl transferase superfamily ACIB15232_1814 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_1815 PF02569 Pantoate-beta-alanine ligase ACIB15232_1817 PF04055 Radical SAM superfamily ACIB15232_1817 PF18693 TRAM domain ACIB15232_1817 PF00919 Uncharacterized protein family UPF0004 ACIB15232_1818 PF01171 PP-loop family ACIB15232_1820 PF00543 Nitrogen regulatory protein P-II ACIB15232_1823 PF08335 GlnD PII-uridylyltransferase ACIB15232_1823 PF01966 HD domain ACIB15232_1824 PF01553 Acyltransferase ACIB15232_1824 PF00501 AMP-binding enzyme ACIB15232_1825 PF00375 Sodium:dicarboxylate symporter family ACIB15232_1831 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACIB15232_1832 PF02040 Arsenical pump membrane protein ACIB15232_1834 PF02374 Anion-transporting ATPase ACIB15232_1835 PF06953 Arsenical resistance operon trans-acting repressor ArsD ACIB15232_1836 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACIB15232_1838 PF02779 Transketolase, pyrimidine binding domain ACIB15232_1838 PF02780 Transketolase, C-terminal domain ACIB15232_1838 PF00456 Transketolase, thiamine diphosphate binding domain ACIB15232_1839 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_1839 PF00989 PAS fold ACIB15232_1839 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1841 PF13533 Biotin-lipoyl like ACIB15232_1842 PF03412 Peptidase C39 family ACIB15232_1842 PF00005 ABC transporter ACIB15232_1842 PF00664 ABC transporter transmembrane region ACIB15232_1845 PF00072 Response regulator receiver domain ACIB15232_1845 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_1846 PF08447 PAS fold ACIB15232_1846 PF08448 PAS fold ACIB15232_1846 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1848 PF00672 HAMP domain ACIB15232_1848 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_1848 PF02203 Tar ligand binding domain homologue ACIB15232_1849 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACIB15232_1852 PF00364 Biotin-requiring enzyme ACIB15232_1859 PF05690 Thiazole biosynthesis protein ThiG ACIB15232_1861 PF03853 YjeF-related protein N-terminus ACIB15232_1861 PF01256 Carbohydrate kinase ACIB15232_1863 PF00814 Glycoprotease family ACIB15232_1866 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACIB15232_1866 PF13288 DXP reductoisomerase C-terminal domain ACIB15232_1866 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACIB15232_1872 PF03129 Anticodon binding domain ACIB15232_1872 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIB15232_1872 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACIB15232_1873 PF00707 Translation initiation factor IF-3, C-terminal domain ACIB15232_1873 PF05198 Translation initiation factor IF-3, N-terminal domain ACIB15232_1874 PF01632 Ribosomal protein L35 ACIB15232_1875 PF00453 Ribosomal protein L20 ACIB15232_1878 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIB15232_1879 PF12804 MobA-like NTP transferase domain ACIB15232_1880 PF00330 Aconitase family (aconitate hydratase) ACIB15232_1881 PF01252 Signal peptidase (SPase) II ACIB15232_1882 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACIB15232_1882 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACIB15232_1882 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACIB15232_1882 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACIB15232_1883 PF01649 Ribosomal protein S20 ACIB15232_1884 PF00472 RF-1 domain ACIB15232_1884 PF03462 PCRF domain ACIB15232_1885 PF12849 PBP superfamily domain ACIB15232_1886 PF00563 EAL domain ACIB15232_1886 PF12792 CSS motif domain associated with EAL ACIB15232_1887 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_1888 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_1889 PF00005 ABC transporter ACIB15232_1890 PF01895 PhoU domain ACIB15232_1892 PF00072 Response regulator receiver domain ACIB15232_1892 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_1893 PF13493 Domain of unknown function (DUF4118) ACIB15232_1893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_1893 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_1893 PF02702 Osmosensitive K+ channel His kinase sensor domain ACIB15232_1894 PF00572 Ribosomal protein L13 ACIB15232_1895 PF00380 Ribosomal protein S9/S16 ACIB15232_1896 PF03070 TENA/THI-4/PQQC family ACIB15232_1897 PF02110 Hydroxyethylthiazole kinase family ACIB15232_1898 PF02581 Thiamine monophosphate synthase ACIB15232_1898 PF08543 Phosphomethylpyrimidine kinase ACIB15232_1899 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACIB15232_1900 PF13419 Haloacid dehalogenase-like hydrolase ACIB15232_1904 PF00005 ABC transporter ACIB15232_1904 PF09383 NIL domain ACIB15232_1905 PF02405 Permease MlaE ACIB15232_1906 PF02664 S-Ribosylhomocysteinase (LuxS) ACIB15232_1908 PF00768 D-alanyl-D-alanine carboxypeptidase ACIB15232_1908 PF07943 Penicillin-binding protein 5, C-terminal domain ACIB15232_1910 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACIB15232_1910 PF00117 Glutamine amidotransferase class-I ACIB15232_1912 PF00709 Adenylosuccinate synthetase ACIB15232_1913 PF13393 Histidyl-tRNA synthetase ACIB15232_1914 PF00266 Aminotransferase class-V ACIB15232_1917 PF04264 YceI-like domain ACIB15232_1920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACIB15232_1920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACIB15232_1921 PF03447 Homoserine dehydrogenase, NAD binding domain ACIB15232_1921 PF01842 ACT domain ACIB15232_1921 PF00742 Homoserine dehydrogenase ACIB15232_1922 PF00155 Aminotransferase class I and II ACIB15232_1924 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACIB15232_1924 PF00588 SpoU rRNA Methylase family ACIB15232_1925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACIB15232_1926 PF01197 Ribosomal protein L31 ACIB15232_1934 PF02899 Phage integrase, N-terminal SAM-like domain ACIB15232_1934 PF00589 Phage integrase family ACIB15232_1935 PF01380 SIS domain ACIB15232_1936 PF02719 Polysaccharide biosynthesis protein ACIB15232_1937 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACIB15232_1938 PF00953 Glycosyl transferase family 4 ACIB15232_1941 PF02350 UDP-N-acetylglucosamine 2-epimerase ACIB15232_1942 PF01370 NAD dependent epimerase/dehydratase family ACIB15232_1943 PF08485 Polysaccharide biosynthesis protein C-terminal ACIB15232_1943 PF02719 Polysaccharide biosynthesis protein ACIB15232_1944 PF00977 Histidine biosynthesis protein ACIB15232_1945 PF00117 Glutamine amidotransferase class-I ACIB15232_1949 PF02350 UDP-N-acetylglucosamine 2-epimerase ACIB15232_1951 PF01757 Acyltransferase family ACIB15232_1953 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACIB15232_1954 PF00132 Bacterial transferase hexapeptide (six repeats) ACIB15232_1955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACIB15232_1955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACIB15232_1956 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACIB15232_1956 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACIB15232_1956 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACIB15232_1965 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ACIB15232_1971 PF04335 VirB8 protein ACIB15232_1973 PF03743 Bacterial conjugation TrbI-like protein ACIB15232_1974 PF00437 Type II/IV secretion system protein ACIB15232_1975 PF02534 Type IV secretory system Conjugative DNA transfer ACIB15232_1980 PF08401 Domain of unknown function (DUF1738) ACIB15232_1980 PF18818 Metallopeptidase superfamily domain ACIB15232_1980 PF13362 Toprim domain ACIB15232_1987 PF13657 HipA N-terminal domain ACIB15232_1987 PF07804 HipA-like C-terminal domain ACIB15232_1989 PF13333 Integrase core domain ACIB15232_1989 PF00665 Integrase core domain ACIB15232_1989 PF13276 HTH-like domain ACIB15232_1990 PF01527 Transposase ACIB15232_1991 PF01348 Type II intron maturase ACIB15232_1991 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACIB15232_1993 PF04851 Type III restriction enzyme, res subunit ACIB15232_1993 PF17757 UvrB interaction domain ACIB15232_1993 PF12344 Ultra-violet resistance protein B ACIB15232_1993 PF02151 UvrB/uvrC motif ACIB15232_1993 PF00271 Helicase conserved C-terminal domain ACIB15232_1997 PF00171 Aldehyde dehydrogenase family ACIB15232_1998 PF00239 Resolvase, N terminal domain ACIB15232_1998 PF02796 Helix-turn-helix domain of resolvase ACIB15232_2016 PF00437 Type II/IV secretion system protein ACIB15232_2023 PF01121 Dephospho-CoA kinase ACIB15232_2024 PF02769 AIR synthase related protein, C-terminal domain ACIB15232_2024 PF00586 AIR synthase related protein, N-terminal domain ACIB15232_2027 PF00809 Pterin binding enzyme ACIB15232_2027 PF02965 Vitamin B12 dependent methionine synthase, activation domain ACIB15232_2027 PF02574 Homocysteine S-methyltransferase ACIB15232_2027 PF02607 B12 binding domain ACIB15232_2027 PF02310 B12 binding domain ACIB15232_2029 PF01297 Zinc-uptake complex component A periplasmic ACIB15232_2030 PF00005 ABC transporter ACIB15232_2031 PF00950 ABC 3 transport family ACIB15232_2033 PF01063 Amino-transferase class IV ACIB15232_2036 PF01502 Phosphoribosyl-AMP cyclohydrolase ACIB15232_2036 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ACIB15232_2038 PF01883 Iron-sulfur cluster assembly protein ACIB15232_2038 PF10609 NUBPL iron-transfer P-loop NTPase ACIB15232_2041 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACIB15232_2041 PF02542 YgbB family ACIB15232_2042 PF00072 Response regulator receiver domain ACIB15232_2042 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_2043 PF04608 Phosphatidylglycerophosphatase A ACIB15232_2044 PF04264 YceI-like domain ACIB15232_2045 PF00873 AcrB/AcrD/AcrF family ACIB15232_2049 PF00072 Response regulator receiver domain ACIB15232_2049 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_2050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_2051 PF00072 Response regulator receiver domain ACIB15232_2051 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_2052 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ACIB15232_2053 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIB15232_2054 PF04055 Radical SAM superfamily ACIB15232_2057 PF00977 Histidine biosynthesis protein ACIB15232_2058 PF00398 Ribosomal RNA adenine dimethylase ACIB15232_2059 PF00753 Metallo-beta-lactamase superfamily ACIB15232_2059 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACIB15232_2059 PF17770 Ribonuclease J C-terminal domain ACIB15232_2060 PF00571 CBS domain ACIB15232_2060 PF01380 SIS domain ACIB15232_2061 PF01479 S4 domain ACIB15232_2061 PF00849 RNA pseudouridylate synthase ACIB15232_2062 PF16193 AAA C-terminal domain ACIB15232_2062 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACIB15232_2062 PF12002 MgsA AAA+ ATPase C terminal ACIB15232_2062 PF01661 Macro domain ACIB15232_2063 PF03653 Uncharacterised protein family (UPF0093) ACIB15232_2064 PF02562 PhoH-like protein ACIB15232_2064 PF13638 PIN domain ACIB15232_2066 PF00733 Asparagine synthase ACIB15232_2066 PF13537 Glutamine amidotransferase domain ACIB15232_2068 PF01384 Phosphate transporter family ACIB15232_2069 PF00270 DEAD/DEAH box helicase ACIB15232_2069 PF00271 Helicase conserved C-terminal domain ACIB15232_2070 PF02785 Biotin carboxylase C-terminal domain ACIB15232_2070 PF00289 Biotin carboxylase, N-terminal domain ACIB15232_2070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIB15232_2071 PF00364 Biotin-requiring enzyme ACIB15232_2072 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACIB15232_2072 PF01872 RibD C-terminal domain ACIB15232_2074 PF02637 GatB domain ACIB15232_2074 PF02934 GatB/GatE catalytic domain ACIB15232_2075 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACIB15232_2075 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACIB15232_2076 PF08240 Alcohol dehydrogenase GroES-like domain ACIB15232_2076 PF00107 Zinc-binding dehydrogenase ACIB15232_2078 PF00691 OmpA family ACIB15232_2078 PF05736 OprF membrane domain ACIB15232_2079 PF00268 Ribonucleotide reductase, small chain ACIB15232_2080 PF03477 ATP cone domain ACIB15232_2080 PF02867 Ribonucleotide reductase, barrel domain ACIB15232_2080 PF00317 Ribonucleotide reductase, all-alpha domain ACIB15232_2081 PF00206 Lyase ACIB15232_2081 PF10397 Adenylosuccinate lyase C-terminus ACIB15232_2082 PF00849 RNA pseudouridylate synthase ACIB15232_2084 PF03458 UPF0126 domain ACIB15232_2085 PF02511 Thymidylate synthase complementing protein ACIB15232_2086 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_2088 PF00072 Response regulator receiver domain ACIB15232_2088 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_2095 PF08019 Phosphoethanolamine transferase EptA/EptB ACIB15232_2095 PF00884 Sulfatase ACIB15232_2096 PF01206 Sulfurtransferase TusA ACIB15232_2097 PF02371 Transposase IS116/IS110/IS902 family ACIB15232_2097 PF01548 Transposase ACIB15232_2098 PF04143 Sulphur transport ACIB15232_2099 PF00679 Elongation factor G C-terminus ACIB15232_2099 PF00009 Elongation factor Tu GTP binding domain ACIB15232_2099 PF03144 Elongation factor Tu domain 2 ACIB15232_2100 PF02082 Transcriptional regulator ACIB15232_2101 PF10442 FIST C domain ACIB15232_2101 PF00563 EAL domain ACIB15232_2101 PF08495 FIST N domain ACIB15232_2101 PF00990 Diguanylate cyclase, GGDEF domain ACIB15232_2102 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_2103 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_2104 PF00005 ABC transporter ACIB15232_2104 PF17850 CysA C-terminal regulatory domain ACIB15232_2104 PF12857 TOBE-like domain ACIB15232_2106 PF00149 Calcineurin-like phosphoesterase ACIB15232_2107 PF00266 Aminotransferase class-V ACIB15232_2109 PF00291 Pyridoxal-phosphate dependent enzyme ACIB15232_2110 PF00551 Formyl transferase ACIB15232_2110 PF02911 Formyl transferase, C-terminal domain ACIB15232_2111 PF02075 Crossover junction endodeoxyribonuclease RuvC ACIB15232_a0004 PF00772 DnaB-like helicase N terminal domain ACIB15232_a0004 PF03796 DnaB-like helicase C terminal domain ACIB15232_a0006 PF02195 ParB-like nuclease domain ACIB15232_a0007 PF13614 AAA domain ACIB15232_a0008 PF16124 RecQ zinc-binding ACIB15232_a0008 PF00270 DEAD/DEAH box helicase ACIB15232_a0008 PF00271 Helicase conserved C-terminal domain ACIB15232_a0008 PF00570 HRDC domain ACIB15232_a0008 PF09382 RQC domain ACIB15232_a0019 PF00011 Hsp20/alpha crystallin family ACIB15232_a0020 PF00072 Response regulator receiver domain ACIB15232_a0020 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_a0029 PF01548 Transposase ACIB15232_a0029 PF02371 Transposase IS116/IS110/IS902 family ACIB15232_a0030 PF05656 Protein of unknown function (DUF805) ACIB15232_a0043 PF12419 SNF2 Helicase protein ACIB15232_a0043 PF00271 Helicase conserved C-terminal domain ACIB15232_a0043 PF00176 SNF2 family N-terminal domain ACIB15232_a0044 PF09084 NMT1/THI5 like ACIB15232_a0045 PF00296 Luciferase-like monooxygenase ACIB15232_a0046 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_a0047 PF00005 ABC transporter ACIB15232_a0050 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACIB15232_a0051 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_a0052 PF00528 Binding-protein-dependent transport system inner membrane component ACIB15232_a0053 PF00005 ABC transporter ACIB15232_a0055 PF00291 Pyridoxal-phosphate dependent enzyme ACIB15232_a0057 PF01548 Transposase ACIB15232_a0057 PF02371 Transposase IS116/IS110/IS902 family ACIB15232_a0058 PF02597 ThiS family ACIB15232_a0062 PF00266 Aminotransferase class-V ACIB15232_a0063 PF06426 Serine acetyltransferase, N-terminal ACIB15232_a0063 PF00132 Bacterial transferase hexapeptide (six repeats) ACIB15232_a0065 PF00291 Pyridoxal-phosphate dependent enzyme ACIB15232_a0066 PF02203 Tar ligand binding domain homologue ACIB15232_a0066 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_a0066 PF00672 HAMP domain ACIB15232_a0067 PF08447 PAS fold ACIB15232_a0067 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_a0070 PF00672 HAMP domain ACIB15232_a0070 PF02203 Tar ligand binding domain homologue ACIB15232_a0070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_a0073 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ACIB15232_a0076 PF02535 ZIP Zinc transporter ACIB15232_a0077 PF07715 TonB-dependent Receptor Plug Domain ACIB15232_a0077 PF00593 TonB dependent receptor ACIB15232_a0080 PF02661 Fic/DOC family ACIB15232_a0082 PF00589 Phage integrase family ACIB15232_a0082 PF18644 Phage integrase SAM-like domain ACIB15232_a0083 PF09962 Uncharacterized conserved protein (DUF2196) ACIB15232_a0085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIB15232_a0085 PF00512 His Kinase A (phospho-acceptor) domain ACIB15232_a0085 PF00989 PAS fold ACIB15232_a0085 PF08447 PAS fold ACIB15232_a0088 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ACIB15232_a0090 PF00313 'Cold-shock' DNA-binding domain ACIB15232_a0110 PF09962 Uncharacterized conserved protein (DUF2196) ACIB15232_a0111 PF16450 Proteasomal ATPase OB C-terminal domain ACIB15232_a0111 PF17758 Proteasomal ATPase OB N-terminal domain ACIB15232_a0111 PF00004 ATPase family associated with various cellular activities (AAA) ACIB15232_a0122 PF02146 Sir2 family ACIB15232_a0127 PF00580 UvrD/REP helicase N-terminal domain ACIB15232_a0127 PF13361 UvrD-like helicase C-terminal domain ACIB15232_a0127 PF12705 PD-(D/E)XK nuclease superfamily ACIB15232_a0128 PF01348 Type II intron maturase ACIB15232_a0128 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACIB15232_a0129 PF01526 Tn3 transposase DDE domain ACIB15232_a0129 PF13700 Domain of unknown function (DUF4158) ACIB15232_a0130 PF00239 Resolvase, N terminal domain ACIB15232_a0130 PF02796 Helix-turn-helix domain of resolvase ACIB15232_a0133 PF16226 Domain of unknown function (DUF4885) ACIB15232_a0134 PF01348 Type II intron maturase ACIB15232_a0134 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACIB15232_a0137 PF00216 Bacterial DNA-binding protein ACIB15232_a0138 PF02899 Phage integrase, N-terminal SAM-like domain ACIB15232_a0138 PF00589 Phage integrase family ACIB15232_a0151 PF06986 Type-1V conjugative transfer system mating pair stabilisation ACIB15232_a0152 PF01464 Transglycosylase SLT domain ACIB15232_a0156 PF03743 Bacterial conjugation TrbI-like protein ACIB15232_a0167 PF13361 UvrD-like helicase C-terminal domain ACIB15232_a0167 PF00580 UvrD/REP helicase N-terminal domain ACIB15232_a0172 PF00817 impB/mucB/samB family ACIB15232_a0172 PF11799 impB/mucB/samB family C-terminal domain ACIB15232_a0175 PF01719 Plasmid replication protein ACIB15232_a0176 PF07690 Major Facilitator Superfamily ACIB15232_a0178 PF01076 Plasmid recombination enzyme ACIB15232_a0197 PF02311 AraC-like ligand binding domain ACIB15232_a0197 PF12833 Helix-turn-helix domain ACIB15232_a0200 PF07715 TonB-dependent Receptor Plug Domain ACIB15232_a0200 PF07660 Secretin and TonB N terminus short domain ACIB15232_a0200 PF00593 TonB dependent receptor ACIB15232_a0202 PF04076 Bacterial OB fold (BOF) protein ACIB15232_a0205 PF00486 Transcriptional regulatory protein, C terminal ACIB15232_a0205 PF00072 Response regulator receiver domain ACIB15232_a0212 PF04231 Endonuclease I ACIB15232_a0216 PF00085 Thioredoxin ACIB15232_a0217 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACIB15232_a0217 PF00578 AhpC/TSA family ACIB15232_a0218 PF00141 Peroxidase ACIB15232_a0219 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_a0219 PF08447 PAS fold ACIB15232_a0220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIB15232_a0220 PF02203 Tar ligand binding domain homologue ACIB15232_a0220 PF00672 HAMP domain ACIB15232_a0222 PF09905 DNA-binding protein VF530