locus-tag class description HOO41_00005 PF00308 Bacterial dnaA protein HOO41_00005 PF08299 Bacterial dnaA protein helix-turn-helix HOO41_00005 PF11638 DnaA N-terminal domain HOO41_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HOO41_00010 PF02767 DNA polymerase III beta subunit, central domain HOO41_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HOO41_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_00015 PF01751 Toprim domain HOO41_00015 PF00204 DNA gyrase B HOO41_00015 PF00986 DNA gyrase B subunit, carboxyl terminus HOO41_00020 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO41_00025 PF14489 QueF-like protein HOO41_00040 PF01980 tRNA-methyltransferase O HOO41_00045 PF13649 Methyltransferase domain HOO41_00050 PF00005 ABC transporter HOO41_00050 PF08402 TOBE domain HOO41_00055 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_00070 PF03459 TOBE domain HOO41_00070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO41_00080 PF03466 LysR substrate binding domain HOO41_00080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO41_00100 PF00529 HlyD membrane-fusion protein of T1SS HOO41_00100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HOO41_00105 PF00873 AcrB/AcrD/AcrF family HOO41_00110 PF02321 Outer membrane efflux protein HOO41_00115 PF00672 HAMP domain HOO41_00115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_00115 PF02203 Tar ligand binding domain homologue HOO41_00135 PF01053 Cys/Met metabolism PLP-dependent enzyme HOO41_00140 PF02082 Transcriptional regulator HOO41_00145 PF00291 Pyridoxal-phosphate dependent enzyme HOO41_00155 PF01507 Phosphoadenosine phosphosulfate reductase family HOO41_00160 PF01507 Phosphoadenosine phosphosulfate reductase family HOO41_00165 PF00009 Elongation factor Tu GTP binding domain HOO41_00175 PF07690 Major Facilitator Superfamily HOO41_00180 PF00210 Ferritin-like domain HOO41_00185 PF13419 Haloacid dehalogenase-like hydrolase HOO41_00190 PF00205 Thiamine pyrophosphate enzyme, central domain HOO41_00190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HOO41_00190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HOO41_00195 PF00171 Aldehyde dehydrogenase family HOO41_00200 PF03167 Uracil DNA glycosylase superfamily HOO41_00215 PF03883 Peroxide stress protein YaaA HOO41_00220 PF01544 CorA-like Mg2+ transporter protein HOO41_00235 PF00156 Phosphoribosyl transferase domain HOO41_00240 PF01765 Ribosome recycling factor HOO41_00245 PF03840 Preprotein translocase SecG subunit HOO41_00255 PF17792 ThiD2 family HOO41_00255 PF02581 Thiamine monophosphate synthase HOO41_00260 PF01027 Inhibitor of apoptosis-promoting Bax1 HOO41_00290 PF07650 KH domain HOO41_00290 PF01926 50S ribosome-binding GTPase HOO41_00305 PF00437 Type II/IV secretion system protein HOO41_00310 PF00482 Type II secretion system (T2SS), protein F HOO41_00315 PF01544 CorA-like Mg2+ transporter protein HOO41_00320 PF01227 GTP cyclohydrolase I HOO41_00325 PF00005 ABC transporter HOO41_00325 PF08402 TOBE domain HOO41_00330 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_00335 PF13416 Bacterial extracellular solute-binding protein HOO41_00385 PF02796 Helix-turn-helix domain of resolvase HOO41_00385 PF00239 Resolvase, N terminal domain HOO41_00395 PF12161 HsdM N-terminal domain HOO41_00395 PF02384 N-6 DNA Methylase HOO41_00400 PF01420 Type I restriction modification DNA specificity domain HOO41_00410 PF12008 Type I restriction and modification enzyme - subunit R C terminal HOO41_00410 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HOO41_00410 PF18766 SWI2/SNF2 ATPase HOO41_00445 PF00117 Glutamine amidotransferase class-I HOO41_00495 PF02677 Epoxyqueuosine reductase QueH HOO41_00500 PF02684 Lipid-A-disaccharide synthetase HOO41_00505 PF07977 FabA-like domain HOO41_00510 PF00132 Bacterial transferase hexapeptide (six repeats) HOO41_00510 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HOO41_00515 PF10431 C-terminal, D2-small domain, of ClpB protein HOO41_00515 PF06689 ClpX C4-type zinc finger HOO41_00515 PF07724 AAA domain (Cdc48 subfamily) HOO41_00530 PF00677 Lumazine binding domain HOO41_00535 PF01134 Glucose inhibited division protein A HOO41_00535 PF13932 GidA associated domain HOO41_00575 PF00665 Integrase core domain HOO41_00605 PF13276 HTH-like domain HOO41_00605 PF00665 Integrase core domain HOO41_00605 PF13333 Integrase core domain HOO41_00615 PF06508 Queuosine biosynthesis protein QueC HOO41_00645 PF01261 Xylose isomerase-like TIM barrel HOO41_00650 PF00106 short chain dehydrogenase HOO41_00655 PF01740 STAS domain HOO41_00655 PF00916 Sulfate permease family HOO41_00670 PF16450 Proteasomal ATPase OB C-terminal domain HOO41_00670 PF00004 ATPase family associated with various cellular activities (AAA) HOO41_00670 PF17758 Proteasomal ATPase OB N-terminal domain HOO41_00680 PF02621 Menaquinone biosynthesis HOO41_00685 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HOO41_00695 PF04221 RelB antitoxin HOO41_00705 PF01131 DNA topoisomerase HOO41_00705 PF01751 Toprim domain HOO41_00705 PF13368 Topoisomerase C-terminal repeat HOO41_00720 PF04055 Radical SAM superfamily HOO41_00720 PF06968 Biotin and Thiamin Synthesis associated domain HOO41_00725 PF00154 recA bacterial DNA recombination protein HOO41_00735 PF02719 Polysaccharide biosynthesis protein HOO41_00740 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO41_00745 PF02348 Cytidylyltransferase HOO41_00755 PF03102 NeuB family HOO41_00755 PF08666 SAF domain HOO41_00775 PF13193 AMP-binding enzyme C-terminal domain HOO41_00775 PF16177 Acetyl-coenzyme A synthetase N-terminus HOO41_00775 PF00501 AMP-binding enzyme HOO41_00780 PF01467 Cytidylyltransferase-like HOO41_00790 PF00535 Glycosyl transferase family 2 HOO41_00795 PF00535 Glycosyl transferase family 2 HOO41_00805 PF01370 NAD dependent epimerase/dehydratase family HOO41_00810 PF16363 GDP-mannose 4,6 dehydratase HOO41_00815 PF01050 Mannose-6-phosphate isomerase HOO41_00815 PF00483 Nucleotidyl transferase HOO41_00820 PF00535 Glycosyl transferase family 2 HOO41_00825 PF04991 LicD family HOO41_00835 PF00535 Glycosyl transferase family 2 HOO41_00835 PF01501 Glycosyl transferase family 8 HOO41_00865 PF02719 Polysaccharide biosynthesis protein HOO41_00870 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO41_00895 PF00483 Nucleotidyl transferase HOO41_00910 PF02348 Cytidylyltransferase HOO41_00925 PF00669 Bacterial flagellin N-terminal helical region HOO41_00925 PF07196 Flagellin hook IN motif HOO41_00925 PF00700 Bacterial flagellin C-terminal helical region HOO41_00930 PF00669 Bacterial flagellin N-terminal helical region HOO41_00930 PF07196 Flagellin hook IN motif HOO41_00930 PF00700 Bacterial flagellin C-terminal helical region HOO41_00945 PF05958 tRNA (Uracil-5-)-methyltransferase HOO41_00960 PF17191 RecG wedge domain HOO41_00960 PF00271 Helicase conserved C-terminal domain HOO41_00960 PF00270 DEAD/DEAH box helicase HOO41_00970 PF14602 Hexapeptide repeat of succinyl-transferase HOO41_00970 PF12804 MobA-like NTP transferase domain HOO41_00975 PF04127 DNA / pantothenate metabolism flavoprotein HOO41_00975 PF02441 Flavoprotein HOO41_00980 PF01255 Putative undecaprenyl diphosphate synthase HOO41_00995 PF01416 tRNA pseudouridine synthase HOO41_01005 PF01628 HrcA protein C terminal domain HOO41_01010 PF01025 GrpE HOO41_01015 PF00012 Hsp70 protein HOO41_01035 PF04028 Domain of unknown function (DUF374) HOO41_01040 PF00919 Uncharacterized protein family UPF0004 HOO41_01040 PF01938 TRAM domain HOO41_01040 PF04055 Radical SAM superfamily HOO41_01050 PF08529 NusA N-terminal domain HOO41_01050 PF13184 NusA-like KH domain HOO41_01055 PF09190 DALR domain HOO41_01055 PF01406 tRNA synthetases class I (C) catalytic domain HOO41_01060 PF03960 ArsC family HOO41_01065 PF02686 Glu-tRNAGln amidotransferase C subunit HOO41_01070 PF01702 Queuine tRNA-ribosyltransferase HOO41_01085 PF01225 Mur ligase family, catalytic domain HOO41_01085 PF02875 Mur ligase family, glutamate ligase domain HOO41_01085 PF08245 Mur ligase middle domain HOO41_01100 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HOO41_01100 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HOO41_01105 PF00773 RNB domain HOO41_01115 PF06144 DNA polymerase III, delta subunit HOO41_01120 PF01250 Ribosomal protein S6 HOO41_01125 PF00436 Single-strand binding protein family HOO41_01130 PF01084 Ribosomal protein S18 HOO41_01135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HOO41_01140 PF03462 PCRF domain HOO41_01140 PF00472 RF-1 domain HOO41_01155 PF02660 Glycerol-3-phosphate acyltransferase HOO41_01160 PF02445 Quinolinate synthetase A protein HOO41_01165 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HOO41_01165 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HOO41_01180 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HOO41_01190 PF08544 GHMP kinases C terminal HOO41_01190 PF00288 GHMP kinases N terminal domain HOO41_01200 PF00009 Elongation factor Tu GTP binding domain HOO41_01200 PF11987 Translation-initiation factor 2 HOO41_01200 PF04760 Translation initiation factor IF-2, N-terminal region HOO41_01205 PF02033 Ribosome-binding factor A HOO41_01210 PF02576 RimP N-terminal domain HOO41_01215 PF01872 RibD C-terminal domain HOO41_01215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HOO41_01220 PF09285 Elongation factor P, C-terminal HOO41_01220 PF08207 Elongation factor P (EF-P) KOW-like domain HOO41_01220 PF01132 Elongation factor P (EF-P) OB domain HOO41_01225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HOO41_01225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HOO41_01225 PF01842 ACT domain HOO41_01230 PF00575 S1 RNA binding domain HOO41_01235 PF02401 LytB protein HOO41_01240 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HOO41_01245 PF03484 tRNA synthetase B5 domain HOO41_01245 PF03147 Ferredoxin-fold anticodon binding domain HOO41_01245 PF01588 Putative tRNA binding domain HOO41_01245 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HOO41_01250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HOO41_01250 PF01409 tRNA synthetases class II core domain (F) HOO41_01255 PF01230 HIT domain HOO41_01260 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HOO41_01265 PF00109 Beta-ketoacyl synthase, N-terminal domain HOO41_01265 PF02801 Beta-ketoacyl synthase, C-terminal domain HOO41_01270 PF00550 Phosphopantetheine attachment site HOO41_01290 PF06508 Queuosine biosynthesis protein QueC HOO41_01310 PF00033 Cytochrome b/b6/petB HOO41_01310 PF00032 Cytochrome b(C-terminal)/b6/petD HOO41_01320 PF00291 Pyridoxal-phosphate dependent enzyme HOO41_01325 PF00696 Amino acid kinase family HOO41_01330 PF13361 UvrD-like helicase C-terminal domain HOO41_01330 PF12705 PD-(D/E)XK nuclease superfamily HOO41_01330 PF00580 UvrD/REP helicase N-terminal domain HOO41_01340 PF00119 ATP synthase A chain HOO41_01345 PF13291 ACT domain HOO41_01345 PF00291 Pyridoxal-phosphate dependent enzyme HOO41_01350 PF01116 Fructose-bisphosphate aldolase class-II HOO41_01360 PF00486 Transcriptional regulatory protein, C terminal HOO41_01360 PF00072 Response regulator receiver domain HOO41_01365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_01365 PF00512 His Kinase A (phospho-acceptor) domain HOO41_01370 PF01545 Cation efflux family HOO41_01370 PF16916 Dimerisation domain of Zinc Transporter HOO41_01390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HOO41_01390 PF02403 Seryl-tRNA synthetase N-terminal domain HOO41_01400 PF00563 EAL domain HOO41_01400 PF10442 FIST C domain HOO41_01400 PF00990 Diguanylate cyclase, GGDEF domain HOO41_01400 PF08495 FIST N domain HOO41_01420 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HOO41_01425 PF12801 4Fe-4S binding domain HOO41_01425 PF13237 4Fe-4S dicluster domain HOO41_01430 PF12838 4Fe-4S dicluster domain HOO41_01430 PF12800 4Fe-4S binding domain HOO41_01435 PF10518 TAT (twin-arginine translocation) pathway signal sequence HOO41_01435 PF01568 Molydopterin dinucleotide binding domain HOO41_01435 PF00384 Molybdopterin oxidoreductase HOO41_01435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HOO41_01450 PF00591 Glycosyl transferase family, a/b domain HOO41_01450 PF02885 Glycosyl transferase family, helical bundle domain HOO41_01455 PF04055 Radical SAM superfamily HOO41_01455 PF06463 Molybdenum Cofactor Synthesis C HOO41_01460 PF00312 Ribosomal protein S15 HOO41_01480 PF00072 Response regulator receiver domain HOO41_01480 PF00672 HAMP domain HOO41_01480 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HOO41_01480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_01480 PF01627 Hpt domain HOO41_01480 PF00512 His Kinase A (phospho-acceptor) domain HOO41_01485 PF00072 Response regulator receiver domain HOO41_01490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_01490 PF08447 PAS fold HOO41_01495 PF00672 HAMP domain HOO41_01495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_01495 PF02203 Tar ligand binding domain homologue HOO41_01500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_01500 PF00512 His Kinase A (phospho-acceptor) domain HOO41_01500 PF00989 PAS fold HOO41_01525 PF01575 MaoC like domain HOO41_01530 PF00501 AMP-binding enzyme HOO41_01530 PF13193 AMP-binding enzyme C-terminal domain HOO41_01560 PF02617 ATP-dependent Clp protease adaptor protein ClpS HOO41_01565 PF00004 ATPase family associated with various cellular activities (AAA) HOO41_01565 PF02861 Clp amino terminal domain, pathogenicity island component HOO41_01565 PF17871 AAA lid domain HOO41_01565 PF10431 C-terminal, D2-small domain, of ClpB protein HOO41_01565 PF07724 AAA domain (Cdc48 subfamily) HOO41_01600 PF00113 Enolase, C-terminal TIM barrel domain HOO41_01600 PF03952 Enolase, N-terminal domain HOO41_01615 PF07690 Major Facilitator Superfamily HOO41_01625 PF00164 Ribosomal protein S12/S23 HOO41_01630 PF00177 Ribosomal protein S7p/S5e HOO41_01635 PF00679 Elongation factor G C-terminus HOO41_01635 PF14492 Elongation Factor G, domain II HOO41_01635 PF03764 Elongation factor G, domain IV HOO41_01635 PF03144 Elongation factor Tu domain 2 HOO41_01635 PF00009 Elongation factor Tu GTP binding domain HOO41_01640 PF01513 ATP-NAD kinase HOO41_01645 PF13476 AAA domain HOO41_01650 PF00672 HAMP domain HOO41_01650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_01650 PF17200 Single Cache domain 2 HOO41_01655 PF01136 Peptidase family U32 HOO41_01665 PF00731 AIR carboxylase HOO41_01675 PF02091 Glycyl-tRNA synthetase alpha subunit HOO41_01680 PF01784 NIF3 (NGG1p interacting factor 3) HOO41_01690 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HOO41_01690 PF02390 Putative methyltransferase HOO41_01695 PF00849 RNA pseudouridylate synthase HOO41_01700 PF00448 SRP54-type protein, GTPase domain HOO41_01700 PF02881 SRP54-type protein, helical bundle domain HOO41_01700 PF02978 Signal peptide binding domain HOO41_01705 PF00886 Ribosomal protein S16 HOO41_01715 PF01782 RimM N-terminal domain HOO41_01730 PF00460 Flagella basal body rod protein HOO41_01730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HOO41_01735 PF00072 Response regulator receiver domain HOO41_01745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HOO41_01745 PF00460 Flagella basal body rod protein HOO41_01750 PF00460 Flagella basal body rod protein HOO41_01755 PF08345 Flagellar M-ring protein C-terminal HOO41_01755 PF01514 Secretory protein of YscJ/FliF family HOO41_01760 PF01706 FliG C-terminal domain HOO41_01760 PF14841 FliG middle domain HOO41_01760 PF14842 FliG N-terminal domain HOO41_01770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HOO41_01780 PF00460 Flagella basal body rod protein HOO41_01780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HOO41_01780 PF07559 Flagellar basal body protein FlaE HOO41_01780 PF07196 Flagellin hook IN motif HOO41_01785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HOO41_01785 PF00460 Flagella basal body rod protein HOO41_01785 PF07196 Flagellin hook IN motif HOO41_01785 PF07559 Flagellar basal body protein FlaE HOO41_01805 PF16973 Flagellar motor switch protein FliN N-terminal HOO41_01805 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HOO41_01825 PF00448 SRP54-type protein, GTPase domain HOO41_01830 PF10609 NUBPL iron-transfer P-loop NTPase HOO41_01840 PF02049 Flagellar hook-basal body complex protein FliE HOO41_01845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HOO41_01845 PF00460 Flagella basal body rod protein HOO41_01860 PF01312 FlhB HrpN YscU SpaS Family HOO41_01870 PF18269 T3SS EscN ATPase C-terminal domain HOO41_01870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HOO41_01880 PF00771 FHIPEP family HOO41_01890 PF01613 Flavin reductase like domain HOO41_01900 PF00672 HAMP domain HOO41_01900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_01900 PF02203 Tar ligand binding domain homologue HOO41_01915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_01915 PF02203 Tar ligand binding domain homologue HOO41_01915 PF00672 HAMP domain HOO41_01920 PF08447 PAS fold HOO41_01920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_01925 PF02203 Tar ligand binding domain homologue HOO41_01925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_01925 PF00672 HAMP domain HOO41_01935 PF00990 Diguanylate cyclase, GGDEF domain HOO41_01935 PF00563 EAL domain HOO41_01935 PF03707 Bacterial signalling protein N terminal repeat HOO41_01940 PF08267 Cobalamin-independent synthase, N-terminal domain HOO41_01940 PF01717 Cobalamin-independent synthase, Catalytic domain HOO41_01950 PF01746 tRNA (Guanine-1)-methyltransferase HOO41_01955 PF01245 Ribosomal protein L19 HOO41_01960 PF09335 SNARE associated Golgi protein HOO41_01965 PF00155 Aminotransferase class I and II HOO41_01970 PF12833 Helix-turn-helix domain HOO41_01990 PF01042 Endoribonuclease L-PSP HOO41_01995 PF12821 Threonine/Serine exporter, ThrE HOO41_01995 PF06738 Putative threonine/serine exporter HOO41_02000 PF06738 Putative threonine/serine exporter HOO41_02015 PF01618 MotA/TolQ/ExbB proton channel family HOO41_02020 PF02472 Biopolymer transport protein ExbD/TolR HOO41_02025 PF02976 DNA mismatch repair enzyme MutH HOO41_02030 PF00145 C-5 cytosine-specific DNA methylase HOO41_02040 PF00171 Aldehyde dehydrogenase family HOO41_02045 PF02659 Putative manganese efflux pump HOO41_02060 PF00579 tRNA synthetases class I (W and Y) HOO41_02070 PF01594 AI-2E family transporter HOO41_02080 PF01634 ATP phosphoribosyltransferase HOO41_02085 PF03309 Type III pantothenate kinase HOO41_02100 PF05538 Campylobacter major outer membrane protein HOO41_02105 PF01202 Shikimate kinase HOO41_02110 PF00815 Histidinol dehydrogenase HOO41_02120 PF00348 Polyprenyl synthetase HOO41_02125 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HOO41_02125 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HOO41_02125 PF01488 Shikimate / quinate 5-dehydrogenase HOO41_02130 PF04073 Aminoacyl-tRNA editing domain HOO41_02130 PF03129 Anticodon binding domain HOO41_02130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HOO41_02135 PF00924 Mechanosensitive ion channel HOO41_02135 PF05552 Conserved TM helix HOO41_02140 PF01743 Poly A polymerase head domain HOO41_02140 PF12627 Probable RNA and SrmB- binding site of polymerase A HOO41_02140 PF01966 HD domain HOO41_02150 PF02699 Preprotein translocase subunit HOO41_02155 PF02355 Protein export membrane protein HOO41_02160 PF07549 SecD/SecF GG Motif HOO41_02160 PF02355 Protein export membrane protein HOO41_02175 PF13677 Membrane MotB of proton-channel complex MotA/MotB HOO41_02175 PF00691 OmpA family HOO41_02180 PF01618 MotA/TolQ/ExbB proton channel family HOO41_02190 PF00133 tRNA synthetases class I (I, L, M and V) HOO41_02190 PF13603 Leucyl-tRNA synthetase, Domain 2 HOO41_02190 PF09334 tRNA synthetases class I (M) HOO41_02200 PF08245 Mur ligase middle domain HOO41_02225 PF00271 Helicase conserved C-terminal domain HOO41_02225 PF00270 DEAD/DEAH box helicase HOO41_02225 PF03461 TRCF domain HOO41_02225 PF17757 UvrB interaction domain HOO41_02225 PF02559 CarD-like/TRCF domain HOO41_02235 PF13302 Acetyltransferase (GNAT) domain HOO41_02245 PF01817 Chorismate mutase type II HOO41_02245 PF00800 Prephenate dehydratase HOO41_02250 PF13673 Acetyltransferase (GNAT) domain HOO41_02280 PF00912 Transglycosylase HOO41_02280 PF00905 Penicillin binding protein transpeptidase domain HOO41_02285 PF00005 ABC transporter HOO41_02285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HOO41_02290 PF01676 Metalloenzyme superfamily HOO41_02290 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HOO41_02295 PF00953 Glycosyl transferase family 4 HOO41_02295 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HOO41_02300 PF08245 Mur ligase middle domain HOO41_02325 PF00009 Elongation factor Tu GTP binding domain HOO41_02325 PF03144 Elongation factor Tu domain 2 HOO41_02325 PF03143 Elongation factor Tu C-terminal domain HOO41_02330 PF00471 Ribosomal protein L33 HOO41_02345 PF02357 Transcription termination factor nusG HOO41_02350 PF00298 Ribosomal protein L11, RNA binding domain HOO41_02350 PF03946 Ribosomal protein L11, N-terminal domain HOO41_02355 PF00687 Ribosomal protein L1p/L10e family HOO41_02360 PF00466 Ribosomal protein L10 HOO41_02365 PF00542 Ribosomal protein L7/L12 C-terminal domain HOO41_02365 PF16320 Ribosomal protein L7/L12 dimerisation domain HOO41_02370 PF04563 RNA polymerase beta subunit HOO41_02370 PF04561 RNA polymerase Rpb2, domain 2 HOO41_02370 PF04565 RNA polymerase Rpb2, domain 3 HOO41_02370 PF10385 RNA polymerase beta subunit external 1 domain HOO41_02370 PF00562 RNA polymerase Rpb2, domain 6 HOO41_02370 PF04560 RNA polymerase Rpb2, domain 7 HOO41_02375 PF04997 RNA polymerase Rpb1, domain 1 HOO41_02375 PF00623 RNA polymerase Rpb1, domain 2 HOO41_02375 PF04983 RNA polymerase Rpb1, domain 3 HOO41_02375 PF05000 RNA polymerase Rpb1, domain 4 HOO41_02375 PF04998 RNA polymerase Rpb1, domain 5 HOO41_02395 PF00255 Glutathione peroxidase HOO41_02400 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HOO41_02400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HOO41_02400 PF10518 TAT (twin-arginine translocation) pathway signal sequence HOO41_02405 PF00374 Nickel-dependent hydrogenase HOO41_02410 PF01292 Prokaryotic cytochrome b561 HOO41_02415 PF01750 Hydrogenase maturation protease HOO41_02425 PF01300 Telomere recombination HOO41_02425 PF07503 HypF finger HOO41_02425 PF00708 Acylphosphatase HOO41_02425 PF17788 HypF Kae1-like domain HOO41_02440 PF02492 CobW/HypB/UreG, nucleotide-binding domain HOO41_02445 PF01455 HupF/HypC family HOO41_02450 PF01924 Hydrogenase formation hypA family HOO41_02460 PF00586 AIR synthase related protein, N-terminal domain HOO41_02460 PF02769 AIR synthase related protein, C-terminal domain HOO41_02465 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HOO41_02475 PF01891 Cobalt uptake substrate-specific transmembrane region HOO41_02475 PF13190 PDGLE domain HOO41_02490 PF00005 ABC transporter HOO41_02495 PF00793 DAHP synthetase I family HOO41_02505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HOO41_02515 PF03631 Virulence factor BrkB HOO41_02520 PF01565 FAD binding domain HOO41_02520 PF02913 FAD linked oxidases, C-terminal domain HOO41_02530 PF00578 AhpC/TSA family HOO41_02535 PF13649 Methyltransferase domain HOO41_02540 PF06574 FAD synthetase HOO41_02540 PF01687 Riboflavin kinase HOO41_02545 PF01728 FtsJ-like methyltransferase HOO41_02545 PF01479 S4 domain HOO41_02555 PF09186 Domain of unknown function (DUF1949) HOO41_02555 PF01205 Uncharacterized protein family UPF0029 HOO41_02575 PF00459 Inositol monophosphatase family HOO41_02580 PF00037 4Fe-4S binding domain HOO41_02590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HOO41_02610 PF00483 Nucleotidyl transferase HOO41_02615 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HOO41_02620 PF04321 RmlD substrate binding domain HOO41_02625 PF16363 GDP-mannose 4,6 dehydratase HOO41_02640 PF00535 Glycosyl transferase family 2 HOO41_02645 PF13439 Glycosyltransferase Family 4 HOO41_02645 PF00534 Glycosyl transferases group 1 HOO41_02660 PF00535 Glycosyl transferase family 2 HOO41_02665 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HOO41_02680 PF13580 SIS domain HOO41_02685 PF01467 Cytidylyltransferase-like HOO41_02685 PF00294 pfkB family carbohydrate kinase HOO41_02690 PF01370 NAD dependent epimerase/dehydratase family HOO41_02705 PF00830 Ribosomal L28 family HOO41_02715 PF01960 ArgJ family HOO41_02725 PF00521 DNA gyrase/topoisomerase IV, subunit A HOO41_02725 PF03989 DNA gyrase C-terminal domain, beta-propeller HOO41_02730 PF01118 Semialdehyde dehydrogenase, NAD binding domain HOO41_02730 PF02774 Semialdehyde dehydrogenase, dimerisation domain HOO41_02740 PF01208 Uroporphyrinogen decarboxylase (URO-D) HOO41_02790 PF00005 ABC transporter HOO41_02790 PF02687 FtsX-like permease family HOO41_02790 PF12704 MacB-like periplasmic core domain HOO41_02805 PF04264 YceI-like domain HOO41_02815 PF00149 Calcineurin-like phosphoesterase HOO41_02820 PF00072 Response regulator receiver domain HOO41_02820 PF00486 Transcriptional regulatory protein, C terminal HOO41_02825 PF00672 HAMP domain HOO41_02825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_02825 PF00512 His Kinase A (phospho-acceptor) domain HOO41_02830 PF00005 ABC transporter HOO41_02835 PF00950 ABC 3 transport family HOO41_02840 PF17783 CvfB-like winged helix domain HOO41_02840 PF13509 S1 domain HOO41_02845 PF08534 Redoxin HOO41_02865 PF08264 Anticodon-binding domain of tRNA HOO41_02865 PF00133 tRNA synthetases class I (I, L, M and V) HOO41_02865 PF10458 Valyl tRNA synthetase tRNA binding arm HOO41_02885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_02885 PF08447 PAS fold HOO41_02885 PF13426 PAS domain HOO41_02895 PF07690 Major Facilitator Superfamily HOO41_02900 PF01725 Ham1 family HOO41_02920 PF03807 NADP oxidoreductase coenzyme F420-dependent HOO41_02920 PF14748 Pyrroline-5-carboxylate reductase dimerisation HOO41_02930 PF13525 Outer membrane lipoprotein HOO41_02935 PF05362 Lon protease (S16) C-terminal proteolytic domain HOO41_02935 PF02190 ATP-dependent protease La (LON) substrate-binding domain HOO41_02935 PF00004 ATPase family associated with various cellular activities (AAA) HOO41_02945 PF01451 Low molecular weight phosphotyrosine protein phosphatase HOO41_02955 PF00892 EamA-like transporter family HOO41_02965 PF02785 Biotin carboxylase C-terminal domain HOO41_02965 PF00289 Biotin carboxylase, N-terminal domain HOO41_02965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HOO41_02975 PF02657 Fe-S metabolism associated domain HOO41_02980 PF00266 Aminotransferase class-V HOO41_02990 PF00005 ABC transporter HOO41_02995 PF01458 Uncharacterized protein family (UPF0051) HOO41_03000 PF04324 BFD-like [2Fe-2S] binding domain HOO41_03000 PF01106 NifU-like domain HOO41_03000 PF01592 NifU-like N terminal domain HOO41_03010 PF07694 5TMR of 5TMR-LYT HOO41_03010 PF00990 Diguanylate cyclase, GGDEF domain HOO41_03015 PF14698 Argininosuccinate lyase C-terminal HOO41_03015 PF00206 Lyase HOO41_03020 PF00271 Helicase conserved C-terminal domain HOO41_03020 PF04851 Type III restriction enzyme, res subunit HOO41_03020 PF02151 UvrB/uvrC motif HOO41_03020 PF12344 Ultra-violet resistance protein B HOO41_03020 PF17757 UvrB interaction domain HOO41_03030 PF03449 Transcription elongation factor, N-terminal HOO41_03030 PF01272 Transcription elongation factor, GreA/GreB, C-term HOO41_03035 PF00899 ThiF family HOO41_03040 PF00072 Response regulator receiver domain HOO41_03040 PF01584 CheW-like domain HOO41_03050 PF14659 Phage integrase, N-terminal SAM-like domain HOO41_03050 PF00589 Phage integrase family HOO41_03155 PF00145 C-5 cytosine-specific DNA methylase HOO41_03200 PF10576 Iron-sulfur binding domain of endonuclease III HOO41_03200 PF00633 Helix-hairpin-helix motif HOO41_03200 PF00730 HhH-GPD superfamily base excision DNA repair protein HOO41_03205 PF00586 AIR synthase related protein, N-terminal domain HOO41_03205 PF02769 AIR synthase related protein, C-terminal domain HOO41_03210 PF01142 tRNA pseudouridine synthase D (TruD) HOO41_03220 PF00672 HAMP domain HOO41_03220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_03220 PF02203 Tar ligand binding domain homologue HOO41_03225 PF07499 RuvA, C-terminal domain HOO41_03225 PF01330 RuvA N terminal domain HOO41_03230 PF07478 D-ala D-ala ligase C-terminus HOO41_03230 PF01820 D-ala D-ala ligase N-terminus HOO41_03240 PF02875 Mur ligase family, glutamate ligase domain HOO41_03240 PF08245 Mur ligase middle domain HOO41_03265 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HOO41_03270 PF01029 NusB family HOO41_03275 PF00885 6,7-dimethyl-8-ribityllumazine synthase HOO41_03280 PF03951 Glutamine synthetase, beta-Grasp domain HOO41_03280 PF00120 Glutamine synthetase, catalytic domain HOO41_03290 PF02391 MoaE protein HOO41_03300 PF02621 Menaquinone biosynthesis HOO41_03305 PF02673 Bacitracin resistance protein BacA HOO41_03310 PF03033 Glycosyltransferase family 28 N-terminal domain HOO41_03310 PF04101 Glycosyltransferase family 28 C-terminal domain HOO41_03315 PF01098 Cell cycle protein HOO41_03320 PF00905 Penicillin binding protein transpeptidase domain HOO41_03320 PF03717 Penicillin-binding Protein dimerisation domain HOO41_03320 PF03793 PASTA domain HOO41_03325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HOO41_03330 PF03150 Di-haem cytochrome c peroxidase HOO41_03335 PF04116 Fatty acid hydroxylase superfamily HOO41_03360 PF00137 ATP synthase subunit C HOO41_03375 PF00005 ABC transporter HOO41_03380 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_03385 PF03480 Bacterial extracellular solute-binding protein, family 7 HOO41_03390 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HOO41_03395 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HOO41_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_03400 PF08447 PAS fold HOO41_03400 PF08448 PAS fold HOO41_03405 PF00072 Response regulator receiver domain HOO41_03415 PF17158 Membrane-associated sensor, integral membrane domain HOO41_03415 PF00990 Diguanylate cyclase, GGDEF domain HOO41_03425 PF00486 Transcriptional regulatory protein, C terminal HOO41_03425 PF00072 Response regulator receiver domain HOO41_03440 PF02203 Tar ligand binding domain homologue HOO41_03440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_03440 PF00672 HAMP domain HOO41_03445 PF02954 Bacterial regulatory protein, Fis family HOO41_03445 PF00158 Sigma-54 interaction domain HOO41_03445 PF00072 Response regulator receiver domain HOO41_03450 PF13581 Histidine kinase-like ATPase domain HOO41_03450 PF07536 HWE histidine kinase HOO41_03450 PF13426 PAS domain HOO41_03455 PF13188 PAS domain HOO41_03455 PF13426 PAS domain HOO41_03455 PF00989 PAS fold HOO41_03455 PF00512 His Kinase A (phospho-acceptor) domain HOO41_03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_03460 PF13277 YmdB-like protein HOO41_03475 PF01209 ubiE/COQ5 methyltransferase family HOO41_03480 PF13742 OB-fold nucleic acid binding domain HOO41_03480 PF02601 Exonuclease VII, large subunit HOO41_03485 PF01584 CheW-like domain HOO41_03490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HOO41_03495 PF02261 Aspartate decarboxylase HOO41_03500 PF02575 YbaB/EbfC DNA-binding family HOO41_03505 PF00348 Polyprenyl synthetase HOO41_03510 PF00166 Chaperonin 10 Kd subunit HOO41_03515 PF00118 TCP-1/cpn60 chaperonin family HOO41_03520 PF07943 Penicillin-binding protein 5, C-terminal domain HOO41_03520 PF00768 D-alanyl-D-alanine carboxypeptidase HOO41_03525 PF00990 Diguanylate cyclase, GGDEF domain HOO41_03535 PF02472 Biopolymer transport protein ExbD/TolR HOO41_03540 PF01618 MotA/TolQ/ExbB proton channel family HOO41_03555 PF02687 FtsX-like permease family HOO41_03555 PF12704 MacB-like periplasmic core domain HOO41_03555 PF00005 ABC transporter HOO41_03560 PF12704 MacB-like periplasmic core domain HOO41_03560 PF02687 FtsX-like permease family HOO41_03560 PF00005 ABC transporter HOO41_03565 PF01351 Ribonuclease HII HOO41_03570 PF00004 ATPase family associated with various cellular activities (AAA) HOO41_03570 PF17871 AAA lid domain HOO41_03570 PF02861 Clp amino terminal domain, pathogenicity island component HOO41_03570 PF10431 C-terminal, D2-small domain, of ClpB protein HOO41_03570 PF07724 AAA domain (Cdc48 subfamily) HOO41_03575 PF00468 Ribosomal protein L34 HOO41_03580 PF00825 Ribonuclease P HOO41_03585 PF01809 Putative membrane protein insertion efficiency factor HOO41_03590 PF02096 60Kd inner membrane protein HOO41_03590 PF14849 YidC periplasmic domain HOO41_03600 PF01926 50S ribosome-binding GTPase HOO41_03600 PF12631 MnmE helical domain HOO41_03600 PF10396 GTP-binding protein TrmE N-terminus HOO41_03610 PF00300 Histidine phosphatase superfamily (branch 1) HOO41_03620 PF17158 Membrane-associated sensor, integral membrane domain HOO41_03620 PF00990 Diguanylate cyclase, GGDEF domain HOO41_03630 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HOO41_03635 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HOO41_03640 PF00425 chorismate binding enzyme HOO41_03640 PF04715 Anthranilate synthase component I, N terminal region HOO41_03650 PF00464 Serine hydroxymethyltransferase HOO41_03655 PF00152 tRNA synthetases class II (D, K and N) HOO41_03655 PF01336 OB-fold nucleic acid binding domain HOO41_03665 PF08448 PAS fold HOO41_03665 PF08447 PAS fold HOO41_03665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_03670 PF04551 GcpE protein HOO41_03675 PF03796 DnaB-like helicase C terminal domain HOO41_03675 PF00772 DnaB-like helicase N terminal domain HOO41_03680 PF07963 Prokaryotic N-terminal methylation motif HOO41_03680 PF08334 Type II secretion system (T2SS), protein G HOO41_03685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO41_03690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HOO41_03690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HOO41_03695 PF00593 TonB dependent receptor HOO41_03695 PF07715 TonB-dependent Receptor Plug Domain HOO41_03715 PF00756 Putative esterase HOO41_03720 PF13847 Methyltransferase domain HOO41_03740 PF02554 Carbon starvation protein CstA HOO41_03740 PF13722 5TM C-terminal transporter carbon starvation CstA HOO41_03745 PF05191 Adenylate kinase, active site lid HOO41_03760 PF17158 Membrane-associated sensor, integral membrane domain HOO41_03760 PF00990 Diguanylate cyclase, GGDEF domain HOO41_03765 PF00155 Aminotransferase class I and II HOO41_03770 PF00465 Iron-containing alcohol dehydrogenase HOO41_03785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_03785 PF02203 Tar ligand binding domain homologue HOO41_03785 PF00672 HAMP domain HOO41_03790 PF00842 Alanine racemase, C-terminal domain HOO41_03790 PF01168 Alanine racemase, N-terminal domain HOO41_03795 PF01541 GIY-YIG catalytic domain HOO41_03795 PF02151 UvrB/uvrC motif HOO41_03795 PF08459 UvrC Helix-hairpin-helix N-terminal HOO41_03800 PF00672 HAMP domain HOO41_03800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_03800 PF02203 Tar ligand binding domain homologue HOO41_03805 PF00873 AcrB/AcrD/AcrF family HOO41_03810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HOO41_03810 PF00529 HlyD membrane-fusion protein of T1SS HOO41_03825 PF00072 Response regulator receiver domain HOO41_03825 PF00486 Transcriptional regulatory protein, C terminal HOO41_03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_03830 PF08447 PAS fold HOO41_03830 PF08448 PAS fold HOO41_03835 PF01625 Peptide methionine sulfoxide reductase HOO41_03835 PF08534 Redoxin HOO41_03835 PF01641 SelR domain HOO41_03840 PF00873 AcrB/AcrD/AcrF family HOO41_03845 PF00873 AcrB/AcrD/AcrF family HOO41_03850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HOO41_03850 PF00529 HlyD membrane-fusion protein of T1SS HOO41_03860 PF11849 Domain of unknown function (DUF3369) HOO41_03865 PF00813 FliP family HOO41_03870 PF00905 Penicillin binding protein transpeptidase domain HOO41_03870 PF03717 Penicillin-binding Protein dimerisation domain HOO41_03890 PF00005 ABC transporter HOO41_03895 PF02390 Putative methyltransferase HOO41_03905 PF01479 S4 domain HOO41_03905 PF00849 RNA pseudouridylate synthase HOO41_03910 PF01098 Cell cycle protein HOO41_03920 PF00202 Aminotransferase class-III HOO41_03925 PF06865 Pyrimidine/purine nucleoside phosphorylase HOO41_03945 PF00753 Metallo-beta-lactamase superfamily HOO41_03945 PF16123 Hydroxyacylglutathione hydrolase C-terminus HOO41_04000 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO41_04005 PF00174 Oxidoreductase molybdopterin binding domain HOO41_04010 PF00999 Sodium/hydrogen exchanger family HOO41_04010 PF02080 TrkA-C domain HOO41_04010 PF02254 TrkA-N domain HOO41_04015 PF00580 UvrD/REP helicase N-terminal domain HOO41_04015 PF13361 UvrD-like helicase C-terminal domain HOO41_04020 PF02769 AIR synthase related protein, C-terminal domain HOO41_04020 PF00586 AIR synthase related protein, N-terminal domain HOO41_04025 PF01841 Transglutaminase-like superfamily HOO41_04045 PF02954 Bacterial regulatory protein, Fis family HOO41_04045 PF00158 Sigma-54 interaction domain HOO41_04045 PF00072 Response regulator receiver domain HOO41_04050 PF08448 PAS fold HOO41_04050 PF08447 PAS fold HOO41_04050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_04075 PF00384 Molybdopterin oxidoreductase HOO41_04075 PF01568 Molydopterin dinucleotide binding domain HOO41_04080 PF00384 Molybdopterin oxidoreductase HOO41_04080 PF01568 Molydopterin dinucleotide binding domain HOO41_04080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HOO41_04085 PF13247 4Fe-4S dicluster domain HOO41_04095 PF02634 FdhD/NarQ family HOO41_04100 PF00266 Aminotransferase class-V HOO41_04105 PF03454 MoeA C-terminal region (domain IV) HOO41_04105 PF00994 Probable molybdopterin binding domain HOO41_04105 PF03453 MoeA N-terminal region (domain I and II) HOO41_04115 PF12823 Domain of unknown function (DUF3817) HOO41_04160 PF01145 SPFH domain / Band 7 family HOO41_04175 PF05661 Protein of unknown function (DUF808) HOO41_04180 PF01522 Polysaccharide deacetylase HOO41_04190 PF02384 N-6 DNA Methylase HOO41_04200 PF17761 DUF1016 N-terminal domain HOO41_04200 PF06250 YhcG PDDEXK nuclease domain HOO41_04210 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 HOO41_04210 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) HOO41_04235 PF00271 Helicase conserved C-terminal domain HOO41_04235 PF17764 3′ DNA-binding domain (3′BD) HOO41_04235 PF18074 Primosomal protein N C-terminal domain HOO41_04235 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HOO41_04235 PF00270 DEAD/DEAH box helicase HOO41_04240 PF14602 Hexapeptide repeat of succinyl-transferase HOO41_04240 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HOO41_04245 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HOO41_04245 PF18381 YcaO cyclodehydratase C-terminal domain HOO41_04250 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HOO41_04250 PF12833 Helix-turn-helix domain HOO41_04250 PF02805 Metal binding domain of Ada HOO41_04250 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HOO41_04255 PF00464 Serine hydroxymethyltransferase HOO41_04270 PF00571 CBS domain HOO41_04270 PF03471 Transporter associated domain HOO41_04275 PF01594 AI-2E family transporter HOO41_04300 PF01594 AI-2E family transporter HOO41_04305 PF05496 Holliday junction DNA helicase RuvB P-loop domain HOO41_04305 PF05491 RuvB C-terminal winged helix domain HOO41_04305 PF17864 RuvB AAA lid domain HOO41_04310 PF02548 Ketopantoate hydroxymethyltransferase HOO41_04315 PF00290 Tryptophan synthase alpha chain HOO41_04320 PF04377 Arginine-tRNA-protein transferase, C terminus HOO41_04320 PF04376 Arginine-tRNA-protein transferase, N terminus HOO41_04330 PF07664 Ferrous iron transport protein B C terminus HOO41_04330 PF02421 Ferrous iron transport protein B HOO41_04330 PF07670 Nucleoside recognition HOO41_04340 PF01475 Ferric uptake regulator family HOO41_04345 PF00764 Arginosuccinate synthase HOO41_04350 PF12911 N-terminal TM domain of oligopeptide transport permease C HOO41_04350 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_04360 PF01966 HD domain HOO41_04360 PF00013 KH domain HOO41_04360 PF12072 Domain of unknown function (DUF3552) HOO41_04365 PF01812 5-formyltetrahydrofolate cyclo-ligase family HOO41_04375 PF00448 SRP54-type protein, GTPase domain HOO41_04395 PF01638 HxlR-like helix-turn-helix HOO41_04400 PF02525 Flavodoxin-like fold HOO41_04405 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HOO41_04420 PF12848 ABC transporter HOO41_04420 PF00005 ABC transporter HOO41_04425 PF03061 Thioesterase superfamily HOO41_04430 PF02203 Tar ligand binding domain homologue HOO41_04430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_04430 PF00672 HAMP domain HOO41_04440 PF00226 DnaJ domain HOO41_04440 PF00684 DnaJ central domain HOO41_04440 PF01556 DnaJ C terminal domain HOO41_04450 PF00933 Glycosyl hydrolase family 3 N terminal domain HOO41_04460 PF02899 Phage integrase, N-terminal SAM-like domain HOO41_04460 PF00589 Phage integrase family HOO41_04515 PF00106 short chain dehydrogenase HOO41_04525 PF02885 Glycosyl transferase family, helical bundle domain HOO41_04525 PF00591 Glycosyl transferase family, a/b domain HOO41_04530 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HOO41_04535 PF12399 Branched-chain amino acid ATP-binding cassette transporter HOO41_04535 PF00005 ABC transporter HOO41_04555 PF00072 Response regulator receiver domain HOO41_04555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_04560 PF02348 Cytidylyltransferase HOO41_04570 PF01339 CheB methylesterase HOO41_04570 PF00072 Response regulator receiver domain HOO41_04580 PF09411 Lipid A 3-O-deacylase (PagL) HOO41_04585 PF01790 Prolipoprotein diacylglyceryl transferase HOO41_04605 PF00990 Diguanylate cyclase, GGDEF domain HOO41_04605 PF00072 Response regulator receiver domain HOO41_04630 PF00893 Small Multidrug Resistance protein HOO41_04635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_04640 PF00072 Response regulator receiver domain HOO41_04640 PF00486 Transcriptional regulatory protein, C terminal HOO41_04650 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO41_04660 PF11791 Aconitate B N-terminal domain HOO41_04660 PF06434 Aconitate hydratase 2 N-terminus HOO41_04660 PF00330 Aconitase family (aconitate hydratase) HOO41_04665 PF00156 Phosphoribosyl transferase domain HOO41_04670 PF04241 Protein of unknown function (DUF423) HOO41_04675 PF04461 Protein of unknown function (DUF520) HOO41_04680 PF00293 NUDIX domain HOO41_04705 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HOO41_04705 PF00925 GTP cyclohydrolase II HOO41_04715 PF01293 Phosphoenolpyruvate carboxykinase HOO41_04730 PF00133 tRNA synthetases class I (I, L, M and V) HOO41_04730 PF01588 Putative tRNA binding domain HOO41_04730 PF09334 tRNA synthetases class I (M) HOO41_04740 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HOO41_04765 PF00749 tRNA synthetases class I (E and Q), catalytic domain HOO41_04775 PF04055 Radical SAM superfamily HOO41_04780 PF07244 Surface antigen variable number repeat HOO41_04780 PF01103 Surface antigen HOO41_04785 PF02153 Prephenate dehydrogenase HOO41_04785 PF01842 ACT domain HOO41_04795 PF09107 Elongation factor SelB, winged helix HOO41_04795 PF00009 Elongation factor Tu GTP binding domain HOO41_04795 PF09106 Elongation factor SelB, winged helix HOO41_04795 PF09105 Elongation factor SelB, winged helix HOO41_04795 PF03144 Elongation factor Tu domain 2 HOO41_04800 PF03841 L-seryl-tRNA selenium transferase HOO41_04805 PF02253 Phospholipase A1 HOO41_04810 PF00834 Ribulose-phosphate 3 epimerase family HOO41_04815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HOO41_04820 PF00929 Exonuclease HOO41_04820 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HOO41_04820 PF14579 Helix-hairpin-helix motif HOO41_04820 PF02811 PHP domain HOO41_04820 PF07733 Bacterial DNA polymerase III alpha NTPase domain HOO41_04820 PF11490 DNA polymerase III polC-type N-terminus II HOO41_04820 PF14480 DNA polymerase III polC-type N-terminus I HOO41_04830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HOO41_04835 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HOO41_04835 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HOO41_04835 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HOO41_04845 PF05175 Methyltransferase small domain HOO41_04850 PF03692 Putative zinc- or iron-chelating domain HOO41_04860 PF00218 Indole-3-glycerol phosphate synthase HOO41_04865 PF03466 LysR substrate binding domain HOO41_04865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO41_04870 PF01361 Tautomerase enzyme HOO41_04875 PF00990 Diguanylate cyclase, GGDEF domain HOO41_04885 PF04225 Opacity-associated protein A LysM-like domain HOO41_04885 PF01551 Peptidase family M23 HOO41_04890 PF09424 Yqey-like protein HOO41_04895 PF16326 ABC transporter C-terminal domain HOO41_04895 PF12848 ABC transporter HOO41_04895 PF00005 ABC transporter HOO41_04900 PF02132 RecR protein HOO41_04900 PF13662 Toprim domain HOO41_04920 PF00248 Aldo/keto reductase family HOO41_04925 PF02416 mttA/Hcf106 family HOO41_04930 PF00902 Sec-independent protein translocase protein (TatC) HOO41_04935 PF02547 Queuosine biosynthesis protein HOO41_04940 PF00929 Exonuclease HOO41_04940 PF13307 Helicase C-terminal domain HOO41_04945 PF05099 Tellurite resistance protein TerB HOO41_04945 PF00226 DnaJ domain HOO41_04960 PF02540 NAD synthase HOO41_04965 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO41_04970 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HOO41_04975 PF03741 Integral membrane protein TerC family HOO41_04980 PF13411 MerR HTH family regulatory protein HOO41_04985 PF01556 DnaJ C terminal domain HOO41_04985 PF00226 DnaJ domain HOO41_04990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_04990 PF00512 His Kinase A (phospho-acceptor) domain HOO41_04990 PF00989 PAS fold HOO41_04990 PF08447 PAS fold HOO41_05000 PF00072 Response regulator receiver domain HOO41_05020 PF00216 Bacterial DNA-binding protein HOO41_05030 PF01795 MraW methylase family HOO41_05055 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HOO41_05055 PF00056 lactate/malate dehydrogenase, NAD binding domain HOO41_05060 PF03971 Monomeric isocitrate dehydrogenase HOO41_05065 PF02618 YceG-like family HOO41_05080 PF00488 MutS domain V HOO41_05080 PF01713 Smr domain HOO41_05085 PF00571 CBS domain HOO41_05085 PF03471 Transporter associated domain HOO41_05085 PF01595 Cyclin M transmembrane N-terminal domain HOO41_05095 PF00005 ABC transporter HOO41_05100 PF01113 Dihydrodipicolinate reductase, N-terminus HOO41_05100 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain HOO41_05105 PF03473 MOSC domain HOO41_05110 PF00202 Aminotransferase class-III HOO41_05120 PF03594 Benzoate membrane transport protein HOO41_05130 PF06969 HemN C-terminal domain HOO41_05130 PF04055 Radical SAM superfamily HOO41_05135 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HOO41_05135 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HOO41_05140 PF02867 Ribonucleotide reductase, barrel domain HOO41_05140 PF00317 Ribonucleotide reductase, all-alpha domain HOO41_05140 PF03477 ATP cone domain HOO41_05155 PF00809 Pterin binding enzyme HOO41_05170 PF13840 ACT domain HOO41_05170 PF00696 Amino acid kinase family HOO41_05170 PF01842 ACT domain HOO41_05175 PF00293 NUDIX domain HOO41_05180 PF06969 HemN C-terminal domain HOO41_05180 PF04055 Radical SAM superfamily HOO41_05185 PF05175 Methyltransferase small domain HOO41_05185 PF17827 PrmC N-terminal domain HOO41_05190 PF01432 Peptidase family M3 HOO41_05205 PF03061 Thioesterase superfamily HOO41_05210 PF13091 PLD-like domain HOO41_05215 PF01435 Peptidase family M48 HOO41_05215 PF16491 CAAX prenyl protease N-terminal, five membrane helices HOO41_05220 PF02646 RmuC family HOO41_05225 PF04228 Putative neutral zinc metallopeptidase HOO41_05235 PF03453 MoeA N-terminal region (domain I and II) HOO41_05235 PF03454 MoeA C-terminal region (domain IV) HOO41_05235 PF00994 Probable molybdopterin binding domain HOO41_05245 PF01171 PP-loop family HOO41_05265 PF01066 CDP-alcohol phosphatidyltransferase HOO41_05270 PF02541 Ppx/GppA phosphatase family HOO41_05280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HOO41_05280 PF00205 Thiamine pyrophosphate enzyme, central domain HOO41_05280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HOO41_05285 PF10369 Small subunit of acetolactate synthase HOO41_05290 PF00132 Bacterial transferase hexapeptide (six repeats) HOO41_05290 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HOO41_05295 PF17854 FtsK alpha domain HOO41_05295 PF09397 Ftsk gamma domain HOO41_05295 PF01580 FtsK/SpoIIIE family HOO41_05310 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus HOO41_05310 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HOO41_05315 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HOO41_05315 PF01926 50S ribosome-binding GTPase HOO41_05320 PF00916 Sulfate permease family HOO41_05320 PF01740 STAS domain HOO41_05330 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HOO41_05330 PF02843 Phosphoribosylglycinamide synthetase, C domain HOO41_05330 PF02844 Phosphoribosylglycinamide synthetase, N domain HOO41_05340 PF04453 LPS transport system D HOO41_05340 PF03968 OstA-like protein HOO41_05350 PF00575 S1 RNA binding domain HOO41_05350 PF00013 KH domain HOO41_05350 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HOO41_05350 PF01138 3' exoribonuclease family, domain 1 HOO41_05350 PF03725 3' exoribonuclease family, domain 2 HOO41_05355 PF00072 Response regulator receiver domain HOO41_05360 PF01584 CheW-like domain HOO41_05360 PF09078 CheY binding HOO41_05360 PF02895 Signal transducing histidine kinase, homodimeric domain HOO41_05360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_05360 PF01627 Hpt domain HOO41_05365 PF01739 CheR methyltransferase, SAM binding domain HOO41_05365 PF03705 CheR methyltransferase, all-alpha domain HOO41_05370 PF03975 CheD chemotactic sensory transduction HOO41_05375 PF01339 CheB methylesterase HOO41_05375 PF00072 Response regulator receiver domain HOO41_05380 PF00589 Phage integrase family HOO41_05380 PF18644 Phage integrase SAM-like domain HOO41_05385 PF00226 DnaJ domain HOO41_05385 PF01556 DnaJ C terminal domain HOO41_05385 PF00684 DnaJ central domain HOO41_05410 PF00753 Metallo-beta-lactamase superfamily HOO41_05420 PF00563 EAL domain HOO41_05420 PF01590 GAF domain HOO41_05420 PF00990 Diguanylate cyclase, GGDEF domain HOO41_05420 PF00360 Phytochrome region HOO41_05425 PF08003 Protein of unknown function (DUF1698) HOO41_05430 PF00990 Diguanylate cyclase, GGDEF domain HOO41_05430 PF00072 Response regulator receiver domain HOO41_05435 PF05140 ResB-like family HOO41_05435 PF01578 Cytochrome C assembly protein HOO41_05440 PF01546 Peptidase family M20/M25/M40 HOO41_05440 PF07687 Peptidase dimerisation domain HOO41_05445 PF17200 Single Cache domain 2 HOO41_05445 PF07730 Histidine kinase HOO41_05455 PF03548 Outer membrane lipoprotein carrier protein LolA HOO41_05460 PF00271 Helicase conserved C-terminal domain HOO41_05460 PF02810 SEC-C motif HOO41_05460 PF07517 SecA DEAD-like domain HOO41_05460 PF01043 SecA preprotein cross-linking domain HOO41_05460 PF07516 SecA Wing and Scaffold domain HOO41_05465 PF02687 FtsX-like permease family HOO41_05465 PF12704 MacB-like periplasmic core domain HOO41_05470 PF00994 Probable molybdopterin binding domain HOO41_05480 PF00004 ATPase family associated with various cellular activities (AAA) HOO41_05480 PF06480 FtsH Extracellular HOO41_05480 PF17862 AAA+ lid domain HOO41_05480 PF01434 Peptidase family M41 HOO41_05485 PF04055 Radical SAM superfamily HOO41_05485 PF00919 Uncharacterized protein family UPF0004 HOO41_05495 PF01761 3-dehydroquinate synthase HOO41_05515 PF01032 FecCD transport family HOO41_05520 PF00005 ABC transporter HOO41_05525 PF01497 Periplasmic binding protein HOO41_05530 PF00593 TonB dependent receptor HOO41_05530 PF07715 TonB-dependent Receptor Plug Domain HOO41_05550 PF13419 Haloacid dehalogenase-like hydrolase HOO41_05555 PF00849 RNA pseudouridylate synthase HOO41_05555 PF01479 S4 domain HOO41_05560 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HOO41_05570 PF08534 Redoxin HOO41_05585 PF02600 Disulfide bond formation protein DsbB HOO41_05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_05595 PF00512 His Kinase A (phospho-acceptor) domain HOO41_05595 PF00497 Bacterial extracellular solute-binding proteins, family 3 HOO41_05605 PF02254 TrkA-N domain HOO41_05605 PF00999 Sodium/hydrogen exchanger family HOO41_05630 PF00211 Adenylate and Guanylate cyclase catalytic domain HOO41_05635 PF01966 HD domain HOO41_05635 PF00072 Response regulator receiver domain HOO41_05640 PF00155 Aminotransferase class I and II HOO41_05645 PF01863 Protein of unknown function DUF45 HOO41_05655 PF00890 FAD binding domain HOO41_05655 PF02910 Fumarate reductase flavoprotein C-term HOO41_05660 PF00117 Glutamine amidotransferase class-I HOO41_05660 PF00958 GMP synthase C terminal domain HOO41_05660 PF02540 NAD synthase HOO41_05670 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system HOO41_05680 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HOO41_05695 PF00561 alpha/beta hydrolase fold HOO41_05710 PF00563 EAL domain HOO41_05710 PF00990 Diguanylate cyclase, GGDEF domain HOO41_05710 PF08448 PAS fold HOO41_05715 PF17755 UvrA DNA-binding domain HOO41_05715 PF17760 UvrA interaction domain HOO41_05715 PF00005 ABC transporter HOO41_05720 PF01118 Semialdehyde dehydrogenase, NAD binding domain HOO41_05725 PF00875 DNA photolyase HOO41_05725 PF03441 FAD binding domain of DNA photolyase HOO41_05730 PF01370 NAD dependent epimerase/dehydratase family HOO41_05730 PF08338 Domain of unknown function (DUF1731) HOO41_05740 PF08212 Lipocalin-like domain HOO41_05745 PF00762 Ferrochelatase HOO41_05755 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HOO41_05770 PF03109 ABC1 family HOO41_05780 PF00563 EAL domain HOO41_05780 PF12792 CSS motif domain associated with EAL HOO41_05785 PF04397 LytTr DNA-binding domain HOO41_05785 PF00072 Response regulator receiver domain HOO41_05790 PF06580 Histidine kinase HOO41_05790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_05790 PF07694 5TMR of 5TMR-LYT HOO41_05790 PF13492 GAF domain HOO41_05795 PF01593 Flavin containing amine oxidoreductase HOO41_05810 PF01699 Sodium/calcium exchanger protein HOO41_05815 PF00476 DNA polymerase family A HOO41_05815 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HOO41_05815 PF01367 5'-3' exonuclease, C-terminal SAM fold HOO41_05825 PF18073 Rubredoxin metal binding domain HOO41_05835 PF02130 Uncharacterized protein family UPF0054 HOO41_05840 PF01475 Ferric uptake regulator family HOO41_05850 PF03023 Lipid II flippase MurJ HOO41_05855 PF00664 ABC transporter transmembrane region HOO41_05855 PF00005 ABC transporter HOO41_05860 PF01180 Dihydroorotate dehydrogenase HOO41_05865 PF00675 Insulinase (Peptidase family M16) HOO41_05865 PF05193 Peptidase M16 inactive domain HOO41_05870 PF00701 Dihydrodipicolinate synthetase family HOO41_05880 PF01066 CDP-alcohol phosphatidyltransferase HOO41_05885 PF02163 Peptidase family M50 HOO41_05885 PF17820 PDZ domain HOO41_05890 PF01168 Alanine racemase, N-terminal domain HOO41_05895 PF02203 Tar ligand binding domain homologue HOO41_05895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_05895 PF00672 HAMP domain HOO41_05900 PF08447 PAS fold HOO41_05900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_05915 PF00486 Transcriptional regulatory protein, C terminal HOO41_05915 PF00072 Response regulator receiver domain HOO41_05925 PF00664 ABC transporter transmembrane region HOO41_05925 PF00005 ABC transporter HOO41_05930 PF01709 Transcriptional regulator HOO41_05950 PF03641 Possible lysine decarboxylase HOO41_05955 PF13419 Haloacid dehalogenase-like hydrolase HOO41_05975 PF02581 Thiamine monophosphate synthase HOO41_05975 PF08543 Phosphomethylpyrimidine kinase HOO41_05980 PF00171 Aldehyde dehydrogenase family HOO41_05995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HOO41_06000 PF00795 Carbon-nitrogen hydrolase HOO41_06015 PF13193 AMP-binding enzyme C-terminal domain HOO41_06015 PF00501 AMP-binding enzyme HOO41_06020 PF03062 MBOAT, membrane-bound O-acyltransferase family HOO41_06035 PF00550 Phosphopantetheine attachment site HOO41_06040 PF00132 Bacterial transferase hexapeptide (six repeats) HOO41_06070 PF00239 Resolvase, N terminal domain HOO41_06070 PF02796 Helix-turn-helix domain of resolvase HOO41_06105 PF13426 PAS domain HOO41_06105 PF00512 His Kinase A (phospho-acceptor) domain HOO41_06105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_06105 PF00672 HAMP domain HOO41_06110 PF00072 Response regulator receiver domain HOO41_06110 PF00486 Transcriptional regulatory protein, C terminal HOO41_06135 PF05525 Branched-chain amino acid transport protein HOO41_06140 PF00588 SpoU rRNA Methylase family HOO41_06145 PF00551 Formyl transferase HOO41_06145 PF01842 ACT domain HOO41_06150 PF02578 Multi-copper polyphenol oxidoreductase laccase HOO41_06160 PF08501 Shikimate dehydrogenase substrate binding domain HOO41_06165 PF17874 MalT-like TPR region HOO41_06165 PF00196 Bacterial regulatory proteins, luxR family HOO41_06170 PF13533 Biotin-lipoyl like HOO41_06175 PF00664 ABC transporter transmembrane region HOO41_06175 PF00005 ABC transporter HOO41_06175 PF03412 Peptidase C39 family HOO41_06185 PF00270 DEAD/DEAH box helicase HOO41_06185 PF00271 Helicase conserved C-terminal domain HOO41_06195 PF03738 Glutathionylspermidine synthase preATP-grasp HOO41_06200 PF00672 HAMP domain HOO41_06200 PF02203 Tar ligand binding domain homologue HOO41_06200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_06205 PF00672 HAMP domain HOO41_06205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_06205 PF02203 Tar ligand binding domain homologue HOO41_06210 PF12826 Helix-hairpin-helix motif HOO41_06210 PF03120 NAD-dependent DNA ligase OB-fold domain HOO41_06210 PF00533 BRCA1 C Terminus (BRCT) domain HOO41_06210 PF01653 NAD-dependent DNA ligase adenylation domain HOO41_06215 PF00571 CBS domain HOO41_06215 PF00478 IMP dehydrogenase / GMP reductase domain HOO41_06220 PF01425 Amidase HOO41_06225 PF01196 Ribosomal protein L17 HOO41_06230 PF01000 RNA polymerase Rpb3/RpoA insert domain HOO41_06230 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HOO41_06230 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HOO41_06235 PF00163 Ribosomal protein S4/S9 N-terminal domain HOO41_06235 PF01479 S4 domain HOO41_06240 PF00411 Ribosomal protein S11 HOO41_06245 PF00416 Ribosomal protein S13/S18 HOO41_06250 PF00444 Ribosomal protein L36 HOO41_06265 PF00180 Isocitrate/isopropylmalate dehydrogenase HOO41_06270 PF00694 Aconitase C-terminal domain HOO41_06275 PF04542 Sigma-70 region 2 HOO41_06275 PF04539 Sigma-70 region 3 HOO41_06275 PF04545 Sigma-70, region 4 HOO41_06275 PF00140 Sigma-70 factor, region 1.2 HOO41_06280 PF02092 Glycyl-tRNA synthetase beta subunit HOO41_06300 PF02527 rRNA small subunit methyltransferase G HOO41_06305 PF00925 GTP cyclohydrolase II HOO41_06310 PF00490 Delta-aminolevulinic acid dehydratase HOO41_06340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HOO41_06340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HOO41_06340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HOO41_06340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HOO41_06345 PF00483 Nucleotidyl transferase HOO41_06350 PF00342 Phosphoglucose isomerase HOO41_06365 PF02719 Polysaccharide biosynthesis protein HOO41_06370 PF00733 Asparagine synthase HOO41_06370 PF13537 Glutamine amidotransferase domain HOO41_06375 PF02397 Bacterial sugar transferase HOO41_06400 PF02348 Cytidylyltransferase HOO41_06415 PF00483 Nucleotidyl transferase HOO41_06420 PF02350 UDP-N-acetylglucosamine 2-epimerase HOO41_06435 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO41_06445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HOO41_06475 PF08889 WbqC-like protein family HOO41_06490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HOO41_06490 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HOO41_06490 PF02142 MGS-like domain HOO41_06495 PF01370 NAD dependent epimerase/dehydratase family HOO41_06505 PF00535 Glycosyl transferase family 2 HOO41_06510 PF02719 Polysaccharide biosynthesis protein HOO41_06540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HOO41_06540 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HOO41_06540 PF02142 MGS-like domain HOO41_06550 PF00561 alpha/beta hydrolase fold HOO41_06560 PF04143 Sulphur transport HOO41_06565 PF00091 Tubulin/FtsZ family, GTPase domain HOO41_06565 PF12327 FtsZ family, C-terminal domain HOO41_06570 PF02491 SHS2 domain inserted in FTSA HOO41_06580 PF14490 Helix-hairpin-helix containing domain HOO41_06580 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain HOO41_06580 PF13538 UvrD-like helicase C-terminal domain HOO41_06590 PF00817 impB/mucB/samB family HOO41_06590 PF11798 IMS family HHH motif HOO41_06590 PF11799 impB/mucB/samB family C-terminal domain HOO41_06600 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding HOO41_06600 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO41_06600 PF10518 TAT (twin-arginine translocation) pathway signal sequence HOO41_06605 PF00005 ABC transporter HOO41_06605 PF16326 ABC transporter C-terminal domain HOO41_06605 PF12848 ABC transporter HOO41_06610 PF04055 Radical SAM superfamily HOO41_06615 PF03099 Biotin/lipoate A/B protein ligase family HOO41_06615 PF10437 Bacterial lipoate protein ligase C-terminus HOO41_06620 PF00456 Transketolase, thiamine diphosphate binding domain HOO41_06620 PF17831 Pyruvate dehydrogenase E1 component middle domain HOO41_06625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HOO41_06625 PF00364 Biotin-requiring enzyme HOO41_06625 PF02817 e3 binding domain HOO41_06630 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO41_06630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HOO41_06640 PF00905 Penicillin binding protein transpeptidase domain HOO41_06645 PF00403 Heavy-metal-associated domain HOO41_06650 PF00271 Helicase conserved C-terminal domain HOO41_06650 PF00270 DEAD/DEAH box helicase HOO41_06665 PF00672 HAMP domain HOO41_06665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_06665 PF02203 Tar ligand binding domain homologue HOO41_06670 PF00075 RNase H HOO41_06675 PF00682 HMGL-like HOO41_06685 PF01312 FlhB HrpN YscU SpaS Family HOO41_06695 PF00583 Acetyltransferase (GNAT) family HOO41_06700 PF01926 50S ribosome-binding GTPase HOO41_06720 PF00475 Imidazoleglycerol-phosphate dehydratase HOO41_06725 PF03330 Lytic transglycolase HOO41_06725 PF05036 Sporulation related domain HOO41_06735 PF01026 TatD related DNase HOO41_06745 PF10431 C-terminal, D2-small domain, of ClpB protein HOO41_06745 PF07724 AAA domain (Cdc48 subfamily) HOO41_06750 PF00227 Proteasome subunit HOO41_06755 PF03948 Ribosomal protein L9, C-terminal domain HOO41_06755 PF01281 Ribosomal protein L9, N-terminal domain HOO41_06765 PF02441 Flavoprotein HOO41_06770 PF01467 Cytidylyltransferase-like HOO41_06775 PF02223 Thymidylate kinase HOO41_06780 PF03129 Anticodon binding domain HOO41_06780 PF13393 Histidyl-tRNA synthetase HOO41_06785 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HOO41_06785 PF17810 Arginine decarboxylase helical bundle domain HOO41_06785 PF17944 Arginine decarboxylase C-terminal helical extension HOO41_06790 PF00132 Bacterial transferase hexapeptide (six repeats) HOO41_06790 PF06426 Serine acetyltransferase, N-terminal HOO41_06795 PF01925 Sulfite exporter TauE/SafE HOO41_06810 PF06865 Pyrimidine/purine nucleoside phosphorylase HOO41_06825 PF08668 HDOD domain HOO41_06830 PF01926 50S ribosome-binding GTPase HOO41_06830 PF06071 Protein of unknown function (DUF933) HOO41_06835 PF13533 Biotin-lipoyl like HOO41_06840 PF00196 Bacterial regulatory proteins, luxR family HOO41_06840 PF00072 Response regulator receiver domain HOO41_06855 PF00005 ABC transporter HOO41_06855 PF03412 Peptidase C39 family HOO41_06855 PF00664 ABC transporter transmembrane region HOO41_06875 PF00085 Thioredoxin HOO41_06880 PF10417 C-terminal domain of 1-Cys peroxiredoxin HOO41_06880 PF00578 AhpC/TSA family HOO41_06885 PF02203 Tar ligand binding domain homologue HOO41_06885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_06885 PF00672 HAMP domain HOO41_06890 PF00072 Response regulator receiver domain HOO41_06890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HOO41_06890 PF01627 Hpt domain HOO41_06890 PF00512 His Kinase A (phospho-acceptor) domain HOO41_06890 PF00672 HAMP domain HOO41_06890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_06895 PF00072 Response regulator receiver domain HOO41_06900 PF00990 Diguanylate cyclase, GGDEF domain HOO41_06900 PF08448 PAS fold HOO41_06905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HOO41_06905 PF00072 Response regulator receiver domain HOO41_06905 PF01627 Hpt domain HOO41_06905 PF00512 His Kinase A (phospho-acceptor) domain HOO41_06905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_06905 PF00672 HAMP domain HOO41_06925 PF03601 Conserved hypothetical protein 698 HOO41_06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO41_06930 PF03466 LysR substrate binding domain HOO41_06935 PF00891 O-methyltransferase domain HOO41_06940 PF00561 alpha/beta hydrolase fold HOO41_06940 PF08386 TAP-like protein HOO41_06955 PF02801 Beta-ketoacyl synthase, C-terminal domain HOO41_06955 PF00109 Beta-ketoacyl synthase, N-terminal domain HOO41_06960 PF01494 FAD binding domain HOO41_06965 PF00550 Phosphopantetheine attachment site HOO41_06985 PF00221 Aromatic amino acid lyase HOO41_07015 PF00005 ABC transporter HOO41_07030 PF02801 Beta-ketoacyl synthase, C-terminal domain HOO41_07030 PF00109 Beta-ketoacyl synthase, N-terminal domain HOO41_07050 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HOO41_07050 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HOO41_07065 PF08497 Radical SAM N-terminal HOO41_07065 PF04055 Radical SAM superfamily HOO41_07075 PF01336 OB-fold nucleic acid binding domain HOO41_07075 PF00152 tRNA synthetases class II (D, K and N) HOO41_07075 PF02938 GAD domain HOO41_07085 PF03167 Uracil DNA glycosylase superfamily HOO41_07090 PF01176 Translation initiation factor 1A / IF-1 HOO41_07095 PF00557 Metallopeptidase family M24 HOO41_07100 PF00344 SecY translocase HOO41_07105 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HOO41_07110 PF00333 Ribosomal protein S5, N-terminal domain HOO41_07110 PF03719 Ribosomal protein S5, C-terminal domain HOO41_07115 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HOO41_07120 PF00347 Ribosomal protein L6 HOO41_07125 PF00410 Ribosomal protein S8 HOO41_07130 PF00253 Ribosomal protein S14p/S29e HOO41_07135 PF00673 ribosomal L5P family C-terminus HOO41_07135 PF00281 Ribosomal protein L5 HOO41_07140 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HOO41_07140 PF00467 KOW motif HOO41_07145 PF00238 Ribosomal protein L14p/L23e HOO41_07150 PF00366 Ribosomal protein S17 HOO41_07155 PF00831 Ribosomal L29 protein HOO41_07160 PF00252 Ribosomal protein L16p/L10e HOO41_07165 PF00189 Ribosomal protein S3, C-terminal domain HOO41_07165 PF07650 KH domain HOO41_07170 PF00237 Ribosomal protein L22p/L17e HOO41_07175 PF00203 Ribosomal protein S19 HOO41_07180 PF00181 Ribosomal Proteins L2, RNA binding domain HOO41_07180 PF03947 Ribosomal Proteins L2, C-terminal domain HOO41_07185 PF00276 Ribosomal protein L23 HOO41_07190 PF00573 Ribosomal protein L4/L1 family HOO41_07195 PF00297 Ribosomal protein L3 HOO41_07200 PF00338 Ribosomal protein S10p/S20e HOO41_07220 PF03372 Endonuclease/Exonuclease/phosphatase family HOO41_07225 PF02568 Thiamine biosynthesis protein (ThiI) HOO41_07225 PF02926 THUMP domain HOO41_07245 PF01078 Magnesium chelatase, subunit ChlI HOO41_07245 PF13335 Magnesium chelatase, subunit ChlI C-terminal HOO41_07250 PF00672 HAMP domain HOO41_07250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_07250 PF02203 Tar ligand binding domain homologue HOO41_07255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_07255 PF08447 PAS fold HOO41_07265 PF01327 Polypeptide deformylase HOO41_07270 PF00574 Clp protease HOO41_07275 PF05698 Bacterial trigger factor protein (TF) C-terminus HOO41_07275 PF05697 Bacterial trigger factor protein (TF) HOO41_07275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HOO41_07280 PF03976 Polyphosphate kinase 2 (PPK2) HOO41_07285 PF03976 Polyphosphate kinase 2 (PPK2) HOO41_07290 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HOO41_07295 PF03435 Saccharopine dehydrogenase NADP binding domain HOO41_07295 PF16653 Saccharopine dehydrogenase C-terminal domain HOO41_07365 PF03787 RAMP superfamily HOO41_07375 PF18211 Csm1 subunit domain B HOO41_07375 PF01966 HD domain HOO41_07395 PF02698 DUF218 domain HOO41_07400 PF01875 Memo-like protein HOO41_07415 PF00034 Cytochrome c HOO41_07420 PF00115 Cytochrome C and Quinol oxidase polypeptide I HOO41_07430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO41_07435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO41_07450 PF04055 Radical SAM superfamily HOO41_07450 PF13186 Iron-sulfur cluster-binding domain HOO41_07460 PF10414 Sirohaem synthase dimerisation region HOO41_07460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HOO41_07460 PF14824 Sirohaem biosynthesis protein central HOO41_07470 PF10414 Sirohaem synthase dimerisation region HOO41_07470 PF14824 Sirohaem biosynthesis protein central HOO41_07470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HOO41_07475 PF17805 AsnC-like ligand binding domain HOO41_07490 PF00762 Ferrochelatase HOO41_07495 PF00664 ABC transporter transmembrane region HOO41_07495 PF00005 ABC transporter HOO41_07505 PF00313 'Cold-shock' DNA-binding domain HOO41_07510 PF00149 Calcineurin-like phosphoesterase HOO41_07520 PF02770 Acyl-CoA dehydrogenase, middle domain HOO41_07520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HOO41_07520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HOO41_07545 PF00403 Heavy-metal-associated domain HOO41_07550 PF10442 FIST C domain HOO41_07550 PF00990 Diguanylate cyclase, GGDEF domain HOO41_07550 PF08495 FIST N domain HOO41_07550 PF00563 EAL domain HOO41_07555 PF00625 Guanylate kinase HOO41_07565 PF00005 ABC transporter HOO41_07570 PF00889 Elongation factor TS HOO41_07575 PF00318 Ribosomal protein S2 HOO41_07580 PF02875 Mur ligase family, glutamate ligase domain HOO41_07580 PF08245 Mur ligase middle domain HOO41_07595 PF08264 Anticodon-binding domain of tRNA HOO41_07595 PF00133 tRNA synthetases class I (I, L, M and V) HOO41_07600 PF06039 Malate:quinone oxidoreductase (Mqo) HOO41_07605 PF02464 Competence-damaged protein HOO41_07605 PF18146 Damage-inducible protein CinA KH domain HOO41_07605 PF00994 Probable molybdopterin binding domain HOO41_07650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_07650 PF00512 His Kinase A (phospho-acceptor) domain HOO41_07655 PF00486 Transcriptional regulatory protein, C terminal HOO41_07655 PF00072 Response regulator receiver domain HOO41_07665 PF00474 Sodium:solute symporter family HOO41_07675 PF02811 PHP domain HOO41_07675 PF11490 DNA polymerase III polC-type N-terminus II HOO41_07675 PF07733 Bacterial DNA polymerase III alpha NTPase domain HOO41_07675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HOO41_07675 PF14579 Helix-hairpin-helix motif HOO41_07675 PF00929 Exonuclease HOO41_07685 PF00474 Sodium:solute symporter family HOO41_07695 PF00474 Sodium:solute symporter family HOO41_07705 PF07733 Bacterial DNA polymerase III alpha NTPase domain HOO41_07705 PF00929 Exonuclease HOO41_07705 PF02811 PHP domain HOO41_07705 PF14579 Helix-hairpin-helix motif HOO41_07705 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HOO41_07715 PF00871 Acetokinase family HOO41_07720 PF01515 Phosphate acetyl/butaryl transferase HOO41_07725 PF00871 Acetokinase family HOO41_07730 PF01343 Peptidase family S49 HOO41_07735 PF01979 Amidohydrolase family HOO41_07740 PF01220 Dehydroquinase class II HOO41_07745 PF01321 Creatinase/Prolidase N-terminal domain HOO41_07745 PF00557 Metallopeptidase family M24 HOO41_07750 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HOO41_07770 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HOO41_07770 PF14572 Phosphoribosyl synthetase-associated domain HOO41_07775 PF00691 OmpA family HOO41_07775 PF05736 OprF membrane domain HOO41_07780 PF06421 GTP-binding protein LepA C-terminus HOO41_07780 PF03144 Elongation factor Tu domain 2 HOO41_07780 PF00009 Elongation factor Tu GTP binding domain HOO41_07780 PF00679 Elongation factor G C-terminus HOO41_07790 PF00117 Glutamine amidotransferase class-I HOO41_07795 PF00977 Histidine biosynthesis protein HOO41_07800 PF00072 Response regulator receiver domain HOO41_07800 PF00990 Diguanylate cyclase, GGDEF domain HOO41_07810 PF01914 MarC family integral membrane protein HOO41_07815 PF01624 MutS domain I HOO41_07815 PF05188 MutS domain II HOO41_07815 PF05192 MutS domain III HOO41_07815 PF05190 MutS family domain IV HOO41_07815 PF00488 MutS domain V HOO41_07830 PF08502 LeuA allosteric (dimerisation) domain HOO41_07830 PF00682 HMGL-like HOO41_07835 PF00004 ATPase family associated with various cellular activities (AAA) HOO41_07835 PF17862 AAA+ lid domain HOO41_07835 PF01434 Peptidase family M41 HOO41_07845 PF01207 Dihydrouridine synthase (Dus) HOO41_07855 PF02590 Predicted SPOUT methyltransferase HOO41_07860 PF02581 Thiamine monophosphate synthase HOO41_07865 PF01039 Carboxyl transferase domain HOO41_07865 PF17848 Acetyl-coA carboxylase zinc finger domain HOO41_07870 PF02773 S-adenosylmethionine synthetase, C-terminal domain HOO41_07870 PF02772 S-adenosylmethionine synthetase, central domain HOO41_07870 PF00438 S-adenosylmethionine synthetase, N-terminal domain HOO41_07875 PF01380 SIS domain HOO41_07880 PF00459 Inositol monophosphatase family HOO41_07890 PF02203 Tar ligand binding domain homologue HOO41_07890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_07890 PF00672 HAMP domain HOO41_07930 PF00883 Cytosol aminopeptidase family, catalytic domain HOO41_07930 PF02789 Cytosol aminopeptidase family, N-terminal domain HOO41_07940 PF00291 Pyridoxal-phosphate dependent enzyme HOO41_07945 PF00156 Phosphoribosyl transferase domain HOO41_07950 PF14743 DNA ligase OB-like domain HOO41_07950 PF01068 ATP dependent DNA ligase domain HOO41_07960 PF01053 Cys/Met metabolism PLP-dependent enzyme HOO41_07965 PF01053 Cys/Met metabolism PLP-dependent enzyme HOO41_07990 PF06965 Na+/H+ antiporter 1 HOO41_08030 PF00696 Amino acid kinase family HOO41_08035 PF01192 RNA polymerase Rpb6 HOO41_08040 PF13291 ACT domain HOO41_08040 PF04607 Region found in RelA / SpoT proteins HOO41_08040 PF02824 TGS domain HOO41_08045 PF01479 S4 domain HOO41_08045 PF00579 tRNA synthetases class I (W and Y) HOO41_08055 PF01520 N-acetylmuramoyl-L-alanine amidase HOO41_08070 PF01195 Peptidyl-tRNA hydrolase HOO41_08075 PF01386 Ribosomal L25p family HOO41_08075 PF14693 Ribosomal protein TL5, C-terminal domain HOO41_08080 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HOO41_08080 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HOO41_08085 PF10502 Signal peptidase, peptidase S26 HOO41_08090 PF02502 Ribose/Galactose Isomerase HOO41_08130 PF10442 FIST C domain HOO41_08130 PF08495 FIST N domain HOO41_08130 PF00563 EAL domain HOO41_08130 PF00990 Diguanylate cyclase, GGDEF domain HOO41_08135 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HOO41_08135 PF01243 Pyridoxamine 5'-phosphate oxidase HOO41_08140 PF01545 Cation efflux family HOO41_08140 PF16916 Dimerisation domain of Zinc Transporter HOO41_08145 PF00990 Diguanylate cyclase, GGDEF domain HOO41_08145 PF00563 EAL domain HOO41_08145 PF03707 Bacterial signalling protein N terminal repeat HOO41_08150 PF03880 DbpA RNA binding domain HOO41_08150 PF00270 DEAD/DEAH box helicase HOO41_08150 PF00271 Helicase conserved C-terminal domain HOO41_08170 PF00183 Hsp90 protein HOO41_08175 PF00360 Phytochrome region HOO41_08175 PF00990 Diguanylate cyclase, GGDEF domain HOO41_08175 PF01590 GAF domain HOO41_08175 PF00563 EAL domain HOO41_08180 PF00512 His Kinase A (phospho-acceptor) domain HOO41_08180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_08180 PF00672 HAMP domain HOO41_08180 PF00072 Response regulator receiver domain HOO41_08180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HOO41_08180 PF01627 Hpt domain HOO41_08195 PF00491 Arginase family HOO41_08200 PF00005 ABC transporter HOO41_08205 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_08210 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_08215 PF12849 PBP superfamily domain HOO41_08220 PF01965 DJ-1/PfpI family HOO41_08225 PF08713 DNA alkylation repair enzyme HOO41_08230 PF04073 Aminoacyl-tRNA editing domain HOO41_08265 PF04403 Paraquat-inducible protein A HOO41_08270 PF02470 MlaD protein HOO41_08275 PF00199 Catalase HOO41_08275 PF06628 Catalase-related immune-responsive HOO41_08280 PF00023 Ankyrin repeat HOO41_08280 PF12796 Ankyrin repeats (3 copies) HOO41_08290 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HOO41_08290 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HOO41_08295 PF08502 LeuA allosteric (dimerisation) domain HOO41_08295 PF00682 HMGL-like HOO41_08300 PF12833 Helix-turn-helix domain HOO41_08305 PF13673 Acetyltransferase (GNAT) domain HOO41_08305 PF13302 Acetyltransferase (GNAT) domain HOO41_08305 PF03352 Methyladenine glycosylase HOO41_08305 PF00117 Glutamine amidotransferase class-I HOO41_08305 PF00958 GMP synthase C terminal domain HOO41_08310 PF00924 Mechanosensitive ion channel HOO41_08315 PF01368 DHH family HOO41_08315 PF02833 DHHA2 domain HOO41_08330 PF00206 Lyase HOO41_08330 PF10415 Fumarase C C-terminus HOO41_08335 PF01048 Phosphorylase superfamily HOO41_08340 PF00698 Acyl transferase domain HOO41_08345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HOO41_08360 PF04052 TolB amino-terminal domain HOO41_08370 PF02472 Biopolymer transport protein ExbD/TolR HOO41_08375 PF01618 MotA/TolQ/ExbB proton channel family HOO41_08380 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HOO41_08385 PF02874 ATP synthase alpha/beta family, beta-barrel domain HOO41_08385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HOO41_08390 PF00231 ATP synthase HOO41_08395 PF00306 ATP synthase alpha/beta chain, C terminal domain HOO41_08395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HOO41_08395 PF02874 ATP synthase alpha/beta family, beta-barrel domain HOO41_08400 PF00213 ATP synthase delta (OSCP) subunit HOO41_08405 PF00430 ATP synthase B/B' CF(0) HOO41_08415 PF17762 HTH domain found in ParB protein HOO41_08415 PF02195 ParB-like nuclease domain HOO41_08420 PF13614 AAA domain HOO41_08435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_08435 PF08447 PAS fold HOO41_08440 PF02911 Formyl transferase, C-terminal domain HOO41_08440 PF00551 Formyl transferase HOO41_08445 PF00696 Amino acid kinase family HOO41_08450 PF01018 GTP1/OBG HOO41_08450 PF01926 50S ribosome-binding GTPase HOO41_08455 PF01016 Ribosomal L27 protein HOO41_08460 PF00829 Ribosomal prokaryotic L21 protein HOO41_08465 PF13662 Toprim domain HOO41_08465 PF08275 DNA primase catalytic core, N-terminal domain HOO41_08465 PF01807 CHC2 zinc finger HOO41_08465 PF16730 DnaG-primase C-terminal, helicase-binding domain HOO41_08475 PF00035 Double-stranded RNA binding motif HOO41_08475 PF14622 Ribonuclease-III-like HOO41_08480 PF01264 Chorismate synthase HOO41_08490 PF03976 Polyphosphate kinase 2 (PPK2) HOO41_08505 PF01625 Peptide methionine sulfoxide reductase HOO41_08515 PF00202 Aminotransferase class-III HOO41_08520 PF08448 PAS fold HOO41_08520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_08520 PF08447 PAS fold HOO41_08525 PF02142 MGS-like domain HOO41_08525 PF01808 AICARFT/IMPCHase bienzyme HOO41_08530 PF00586 AIR synthase related protein, N-terminal domain HOO41_08530 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HOO41_08530 PF02769 AIR synthase related protein, C-terminal domain HOO41_08540 PF01551 Peptidase family M23 HOO41_08540 PF10145 Phage-related minor tail protein HOO41_08540 PF01464 Transglycosylase SLT domain HOO41_08545 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HOO41_08545 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HOO41_08560 PF17674 HHH domain HOO41_08560 PF00575 S1 RNA binding domain HOO41_08560 PF09371 Tex-like protein N-terminal domain HOO41_08560 PF16921 Tex protein YqgF-like domain HOO41_08565 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HOO41_08570 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HOO41_08575 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HOO41_08580 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HOO41_08580 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HOO41_08590 PF10531 SLBB domain HOO41_08590 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HOO41_08590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HOO41_08595 PF00285 Citrate synthase, C-terminal domain HOO41_08600 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal HOO41_08600 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HOO41_08600 PF00384 Molybdopterin oxidoreductase HOO41_08605 PF00146 NADH dehydrogenase HOO41_08610 PF12838 4Fe-4S dicluster domain HOO41_08615 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HOO41_08620 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HOO41_08625 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HOO41_08625 PF00361 Proton-conducting membrane transporter HOO41_08630 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus HOO41_08630 PF00361 Proton-conducting membrane transporter HOO41_08635 PF00361 Proton-conducting membrane transporter HOO41_08640 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HOO41_08645 PF02910 Fumarate reductase flavoprotein C-term HOO41_08645 PF00890 FAD binding domain HOO41_08650 PF13183 4Fe-4S dicluster domain HOO41_08650 PF13085 2Fe-2S iron-sulfur cluster binding domain HOO41_08655 PF00350 Dynamin family HOO41_08660 PF00350 Dynamin family HOO41_08670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HOO41_08670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HOO41_08675 PF02504 Fatty acid synthesis protein HOO41_08680 PF01783 Ribosomal L32p protein family HOO41_08690 PF00334 Nucleoside diphosphate kinase HOO41_08700 PF00578 AhpC/TSA family HOO41_08700 PF10417 C-terminal domain of 1-Cys peroxiredoxin HOO41_08705 PF07497 Rho termination factor, RNA-binding domain HOO41_08705 PF07498 Rho termination factor, N-terminal domain HOO41_08705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HOO41_08710 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HOO41_08710 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HOO41_08715 PF01177 Asp/Glu/Hydantoin racemase HOO41_08720 PF12170 DNA polymerase III tau subunit V interacting with alpha HOO41_08720 PF12169 DNA polymerase III subunits gamma and tau domain III HOO41_08730 PF03900 Porphobilinogen deaminase, C-terminal domain HOO41_08730 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HOO41_08735 PF00857 Isochorismatase family HOO41_08760 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HOO41_08760 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HOO41_08775 PF00115 Cytochrome C and Quinol oxidase polypeptide I HOO41_08780 PF01668 SmpB protein HOO41_08785 PF00288 GHMP kinases N terminal domain HOO41_08790 PF01509 TruB family pseudouridylate synthase (N terminal domain) HOO41_08795 PF00580 UvrD/REP helicase N-terminal domain HOO41_08795 PF13361 UvrD-like helicase C-terminal domain HOO41_08800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HOO41_08800 PF03466 LysR substrate binding domain HOO41_08805 PF04055 Radical SAM superfamily HOO41_08805 PF16199 Radical_SAM C-terminal domain HOO41_08810 PF00156 Phosphoribosyl transferase domain HOO41_08810 PF13537 Glutamine amidotransferase domain HOO41_08815 PF05173 Dihydrodipicolinate reductase, C-terminus HOO41_08815 PF01113 Dihydrodipicolinate reductase, N-terminus HOO41_08820 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO41_08825 PF00085 Thioredoxin HOO41_08830 PF02272 DHHA1 domain HOO41_08830 PF01411 tRNA synthetases class II (A) HOO41_08830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HOO41_08860 PF00486 Transcriptional regulatory protein, C terminal HOO41_08860 PF00072 Response regulator receiver domain HOO41_08865 PF13180 PDZ domain HOO41_08865 PF17820 PDZ domain HOO41_08870 PF00920 Dehydratase family HOO41_08900 PF09383 NIL domain HOO41_08900 PF00005 ABC transporter HOO41_08920 PF01142 tRNA pseudouridine synthase D (TruD) HOO41_08935 PF13180 PDZ domain HOO41_08935 PF03572 Peptidase family S41 HOO41_08940 PF01259 SAICAR synthetase HOO41_08945 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase HOO41_08960 PF01553 Acyltransferase HOO41_08965 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HOO41_08970 PF02416 mttA/Hcf106 family HOO41_08975 PF02416 mttA/Hcf106 family HOO41_08980 PF03485 Arginyl tRNA synthetase N terminal domain HOO41_08980 PF05746 DALR anticodon binding domain HOO41_08980 PF00750 tRNA synthetases class I (R) HOO41_08990 PF01467 Cytidylyltransferase-like HOO41_08995 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HOO41_08995 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HOO41_09000 PF00162 Phosphoglycerate kinase HOO41_09005 PF00121 Triosephosphate isomerase HOO41_09015 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HOO41_09015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HOO41_09020 PF01842 ACT domain HOO41_09020 PF01817 Chorismate mutase type II HOO41_09020 PF00800 Prephenate dehydratase HOO41_09025 PF00155 Aminotransferase class I and II HOO41_09030 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HOO41_09030 PF02779 Transketolase, pyrimidine binding domain HOO41_09030 PF02780 Transketolase, C-terminal domain HOO41_09035 PF03150 Di-haem cytochrome c peroxidase HOO41_09035 PF00034 Cytochrome c HOO41_09045 PF02545 Maf-like protein HOO41_09055 PF00877 NlpC/P60 family HOO41_09065 PF00939 Sodium:sulfate symporter transmembrane region HOO41_09075 PF02683 Cytochrome C biogenesis protein transmembrane region HOO41_09075 PF00085 Thioredoxin HOO41_09075 PF11412 Disulphide bond corrector protein DsbC HOO41_09080 PF00085 Thioredoxin HOO41_09085 PF08443 RimK-like ATP-grasp domain HOO41_09085 PF18030 RimK PreATP-grasp domain HOO41_09100 PF08495 FIST N domain HOO41_09100 PF10442 FIST C domain HOO41_09100 PF00563 EAL domain HOO41_09100 PF00990 Diguanylate cyclase, GGDEF domain HOO41_09105 PF02666 Phosphatidylserine decarboxylase HOO41_09115 PF04055 Radical SAM superfamily HOO41_09125 PF00484 Carbonic anhydrase HOO41_09130 PF00155 Aminotransferase class I and II HOO41_09135 PF02021 Uncharacterised protein family UPF0102 HOO41_09145 PF00391 PEP-utilising enzyme, mobile domain HOO41_09145 PF00224 Pyruvate kinase, barrel domain HOO41_09145 PF02887 Pyruvate kinase, alpha/beta domain HOO41_09155 PF13426 PAS domain HOO41_09155 PF00512 His Kinase A (phospho-acceptor) domain HOO41_09155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_09155 PF00672 HAMP domain HOO41_09160 PF00486 Transcriptional regulatory protein, C terminal HOO41_09160 PF00072 Response regulator receiver domain HOO41_09170 PF02561 Flagellar protein FliS HOO41_09185 PF02107 Flagellar L-ring protein HOO41_09210 PF01313 Bacterial export proteins, family 3 HOO41_09220 PF02119 Flagellar P-ring protein HOO41_09225 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HOO41_09225 PF02154 Flagellar motor switch protein FliM HOO41_09235 PF00543 Nitrogen regulatory protein P-II HOO41_09240 PF00909 Ammonium Transporter Family HOO41_09245 PF12796 Ankyrin repeats (3 copies) HOO41_09245 PF13606 Ankyrin repeat HOO41_09250 PF01966 HD domain HOO41_09250 PF08335 GlnD PII-uridylyltransferase HOO41_09260 PF02040 Arsenical pump membrane protein HOO41_09275 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HOO41_09290 PF01451 Low molecular weight phosphotyrosine protein phosphatase HOO41_09300 PF02780 Transketolase, C-terminal domain HOO41_09300 PF00456 Transketolase, thiamine diphosphate binding domain HOO41_09300 PF02779 Transketolase, pyrimidine binding domain HOO41_09310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_09310 PF08448 PAS fold HOO41_09310 PF08447 PAS fold HOO41_09315 PF02203 Tar ligand binding domain homologue HOO41_09315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_09315 PF00672 HAMP domain HOO41_09335 PF00682 HMGL-like HOO41_09335 PF02436 Conserved carboxylase domain HOO41_09345 PF13099 Domain of unknown function (DUF3944) HOO41_09345 PF03981 Ubiquinol-cytochrome C chaperone HOO41_09400 PF05690 Thiazole biosynthesis protein ThiG HOO41_09405 PF03091 CutA1 divalent ion tolerance protein HOO41_09410 PF01256 Carbohydrate kinase HOO41_09410 PF03853 YjeF-related protein N-terminus HOO41_09420 PF00814 Glycoprotease family HOO41_09435 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HOO41_09435 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HOO41_09435 PF13288 DXP reductoisomerase C-terminal domain HOO41_09465 PF03129 Anticodon binding domain HOO41_09465 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HOO41_09465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HOO41_09470 PF00707 Translation initiation factor IF-3, C-terminal domain HOO41_09470 PF05198 Translation initiation factor IF-3, N-terminal domain HOO41_09475 PF01632 Ribosomal protein L35 HOO41_09480 PF00453 Ribosomal protein L20 HOO41_09490 PF07992 Pyridine nucleotide-disulphide oxidoreductase HOO41_09495 PF12804 MobA-like NTP transferase domain HOO41_09500 PF00330 Aconitase family (aconitate hydratase) HOO41_09505 PF03960 ArsC family HOO41_09510 PF04303 PrpF protein HOO41_09515 PF00330 Aconitase family (aconitate hydratase) HOO41_09515 PF00694 Aconitase C-terminal domain HOO41_09520 PF00285 Citrate synthase, C-terminal domain HOO41_09535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HOO41_09535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HOO41_09540 PF01474 Class-II DAHP synthetase family HOO41_09545 PF00923 Transaldolase/Fructose-6-phosphate aldolase HOO41_09560 PF03652 Holliday junction resolvase HOO41_09565 PF03616 Sodium/glutamate symporter HOO41_09580 PF01648 4'-phosphopantetheinyl transferase superfamily HOO41_09585 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_09590 PF02569 Pantoate-beta-alanine ligase HOO41_09600 PF04055 Radical SAM superfamily HOO41_09600 PF18693 TRAM domain HOO41_09600 PF00919 Uncharacterized protein family UPF0004 HOO41_09605 PF01171 PP-loop family HOO41_09625 PF03734 L,D-transpeptidase catalytic domain HOO41_09625 PF17969 L,D-transpeptidase C-terminal domain HOO41_09635 PF08274 PhnA Zinc-Ribbon HOO41_09635 PF03831 PhnA domain HOO41_09640 PF12849 PBP superfamily domain HOO41_09645 PF03707 Bacterial signalling protein N terminal repeat HOO41_09645 PF00563 EAL domain HOO41_09645 PF00990 Diguanylate cyclase, GGDEF domain HOO41_09650 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_09655 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_09660 PF00005 ABC transporter HOO41_09665 PF01895 PhoU domain HOO41_09675 PF00072 Response regulator receiver domain HOO41_09675 PF00486 Transcriptional regulatory protein, C terminal HOO41_09680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_09680 PF00512 His Kinase A (phospho-acceptor) domain HOO41_09680 PF00989 PAS fold HOO41_09680 PF16736 Single Cache-like HOO41_09685 PF00572 Ribosomal protein L13 HOO41_09690 PF00380 Ribosomal protein S9/S16 HOO41_09700 PF03070 TENA/THI-4/PQQC family HOO41_09705 PF02110 Hydroxyethylthiazole kinase family HOO41_09710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HOO41_09715 PF13419 Haloacid dehalogenase-like hydrolase HOO41_09735 PF00005 ABC transporter HOO41_09735 PF09383 NIL domain HOO41_09740 PF02405 Permease MlaE HOO41_09745 PF02664 S-Ribosylhomocysteinase (LuxS) HOO41_09750 PF01266 FAD dependent oxidoreductase HOO41_09750 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HOO41_09755 PF00768 D-alanyl-D-alanine carboxypeptidase HOO41_09755 PF07943 Penicillin-binding protein 5, C-terminal domain HOO41_09765 PF13426 PAS domain HOO41_09765 PF13188 PAS domain HOO41_09765 PF00989 PAS fold HOO41_09765 PF00512 His Kinase A (phospho-acceptor) domain HOO41_09765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_09770 PF02574 Homocysteine S-methyltransferase HOO41_09770 PF00809 Pterin binding enzyme HOO41_09770 PF02965 Vitamin B12 dependent methionine synthase, activation domain HOO41_09770 PF02607 B12 binding domain HOO41_09770 PF02310 B12 binding domain HOO41_09780 PF01063 Amino-transferase class IV HOO41_09795 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HOO41_09795 PF01502 Phosphoribosyl-AMP cyclohydrolase HOO41_09810 PF00583 Acetyltransferase (GNAT) family HOO41_09815 PF00202 Aminotransferase class-III HOO41_09820 PF06339 Ectoine synthase HOO41_09825 PF01883 Iron-sulfur cluster assembly protein HOO41_09825 PF10609 NUBPL iron-transfer P-loop NTPase HOO41_09830 PF01964 Radical SAM ThiC family HOO41_09840 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HOO41_09840 PF02542 YgbB family HOO41_09850 PF04608 Phosphatidylglycerophosphatase A HOO41_09855 PF03462 PCRF domain HOO41_09855 PF00472 RF-1 domain HOO41_09860 PF01649 Ribosomal protein S20 HOO41_09865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HOO41_09865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HOO41_09865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HOO41_09865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HOO41_09870 PF01252 Signal peptidase (SPase) II HOO41_09875 PF00202 Aminotransferase class-III HOO41_09885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HOO41_09885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HOO41_09890 PF00425 chorismate binding enzyme HOO41_09895 PF01063 Amino-transferase class IV HOO41_09900 PF00117 Glutamine amidotransferase class-I HOO41_09900 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HOO41_09910 PF00709 Adenylosuccinate synthetase HOO41_09915 PF13393 Histidyl-tRNA synthetase HOO41_09920 PF00266 Aminotransferase class-V HOO41_09945 PF17954 Quercetinase C-terminal cupin domain HOO41_09945 PF02678 Pirin HOO41_09950 PF09962 Uncharacterized conserved protein (DUF2196) HOO41_09955 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HOO41_09955 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HOO41_09960 PF02769 AIR synthase related protein, C-terminal domain HOO41_09960 PF00586 AIR synthase related protein, N-terminal domain HOO41_09965 PF17284 Spermidine synthase tetramerisation domain HOO41_09970 PF01121 Dephospho-CoA kinase HOO41_09980 PF13746 4Fe-4S dicluster domain HOO41_09980 PF12801 4Fe-4S binding domain HOO41_09980 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HOO41_09985 PF00117 Glutamine amidotransferase class-I HOO41_09985 PF06418 CTP synthase N-terminus HOO41_09990 PF02272 DHHA1 domain HOO41_09990 PF17768 RecJ OB domain HOO41_09990 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HOO41_09990 PF01368 DHH family HOO41_10005 PF01965 DJ-1/PfpI family HOO41_10010 PF07733 Bacterial DNA polymerase III alpha NTPase domain HOO41_10010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HOO41_10010 PF14579 Helix-hairpin-helix motif HOO41_10010 PF02811 PHP domain HOO41_10015 PF01975 Survival protein SurE HOO41_10030 PF01967 MoaC family HOO41_10035 PF01165 Ribosomal protein S21 HOO41_10040 PF02535 ZIP Zinc transporter HOO41_10045 PF02661 Fic/DOC family HOO41_10080 PF07669 Eco57I restriction-modification methylase HOO41_10090 PF01040 UbiA prenyltransferase family HOO41_10105 PF01197 Ribosomal protein L31 HOO41_10110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HOO41_10115 PF08032 RNA 2'-O ribose methyltransferase substrate binding HOO41_10115 PF00588 SpoU rRNA Methylase family HOO41_10125 PF00155 Aminotransferase class I and II HOO41_10130 PF01842 ACT domain HOO41_10130 PF03447 Homoserine dehydrogenase, NAD binding domain HOO41_10130 PF00742 Homoserine dehydrogenase HOO41_10135 PF00849 RNA pseudouridylate synthase HOO41_10140 PF10397 Adenylosuccinate lyase C-terminus HOO41_10140 PF00206 Lyase HOO41_10145 PF00317 Ribonucleotide reductase, all-alpha domain HOO41_10145 PF02867 Ribonucleotide reductase, barrel domain HOO41_10145 PF03477 ATP cone domain HOO41_10150 PF00268 Ribonucleotide reductase, small chain HOO41_10155 PF05736 OprF membrane domain HOO41_10155 PF00691 OmpA family HOO41_10165 PF07715 TonB-dependent Receptor Plug Domain HOO41_10165 PF00593 TonB dependent receptor HOO41_10175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_10175 PF08447 PAS fold HOO41_10175 PF08448 PAS fold HOO41_10180 PF00072 Response regulator receiver domain HOO41_10180 PF00486 Transcriptional regulatory protein, C terminal HOO41_10190 PF07501 G5 domain HOO41_10190 PF07581 The GLUG motif HOO41_10190 PF00746 LPXTG cell wall anchor motif HOO41_10190 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region HOO41_10190 PF04650 YSIRK type signal peptide HOO41_10190 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region HOO41_10200 PF08240 Alcohol dehydrogenase GroES-like domain HOO41_10200 PF00107 Zinc-binding dehydrogenase HOO41_10205 PF01638 HxlR-like helix-turn-helix HOO41_10210 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HOO41_10210 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HOO41_10215 PF02934 GatB/GatE catalytic domain HOO41_10215 PF02637 GatB domain HOO41_10225 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HOO41_10225 PF01872 RibD C-terminal domain HOO41_10230 PF00364 Biotin-requiring enzyme HOO41_10235 PF02785 Biotin carboxylase C-terminal domain HOO41_10235 PF00289 Biotin carboxylase, N-terminal domain HOO41_10235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HOO41_10240 PF00271 Helicase conserved C-terminal domain HOO41_10240 PF00270 DEAD/DEAH box helicase HOO41_10245 PF00313 'Cold-shock' DNA-binding domain HOO41_10260 PF01384 Phosphate transporter family HOO41_10285 PF02562 PhoH-like protein HOO41_10285 PF13638 PIN domain HOO41_10290 PF03653 Uncharacterised protein family (UPF0093) HOO41_10295 PF16193 AAA C-terminal domain HOO41_10295 PF12002 MgsA AAA+ ATPase C terminal HOO41_10295 PF05496 Holliday junction DNA helicase RuvB P-loop domain HOO41_10295 PF01661 Macro domain HOO41_10300 PF00849 RNA pseudouridylate synthase HOO41_10300 PF01479 S4 domain HOO41_10305 PF00571 CBS domain HOO41_10305 PF01380 SIS domain HOO41_10310 PF00753 Metallo-beta-lactamase superfamily HOO41_10310 PF17770 Ribonuclease J C-terminal domain HOO41_10310 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HOO41_10315 PF00398 Ribosomal RNA adenine dimethylase HOO41_10320 PF00977 Histidine biosynthesis protein HOO41_10335 PF04055 Radical SAM superfamily HOO41_10340 PF00749 tRNA synthetases class I (E and Q), catalytic domain HOO41_10345 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HOO41_10350 PF00486 Transcriptional regulatory protein, C terminal HOO41_10350 PF00072 Response regulator receiver domain HOO41_10355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HOO41_10375 PF00873 AcrB/AcrD/AcrF family HOO41_10380 PF04264 YceI-like domain HOO41_10385 PF00291 Pyridoxal-phosphate dependent enzyme HOO41_10400 PF00149 Calcineurin-like phosphoesterase HOO41_10405 PF00011 Hsp20/alpha crystallin family HOO41_10415 PF00005 ABC transporter HOO41_10415 PF12857 TOBE-like domain HOO41_10415 PF17850 CysA C-terminal regulatory domain HOO41_10420 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_10425 PF00528 Binding-protein-dependent transport system inner membrane component HOO41_10430 PF00672 HAMP domain HOO41_10430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HOO41_10430 PF02203 Tar ligand binding domain homologue HOO41_10435 PF00563 EAL domain HOO41_10435 PF00990 Diguanylate cyclase, GGDEF domain HOO41_10435 PF10442 FIST C domain HOO41_10435 PF08495 FIST N domain HOO41_10440 PF00581 Rhodanese-like domain HOO41_10440 PF00899 ThiF family HOO41_10455 PF02082 Transcriptional regulator HOO41_10460 PF00679 Elongation factor G C-terminus HOO41_10460 PF00009 Elongation factor Tu GTP binding domain HOO41_10460 PF03144 Elongation factor Tu domain 2 HOO41_10465 PF04143 Sulphur transport HOO41_10470 PF01206 Sulfurtransferase TusA HOO41_10475 PF00884 Sulfatase HOO41_10475 PF08019 Phosphoethanolamine transferase EptA/EptB HOO41_10485 PF01219 Prokaryotic diacylglycerol kinase HOO41_10515 PF00072 Response regulator receiver domain HOO41_10515 PF00486 Transcriptional regulatory protein, C terminal HOO41_10525 PF02511 Thymidylate synthase complementing protein HOO41_10530 PF03458 UPF0126 domain HOO41_10540 PF00551 Formyl transferase HOO41_10540 PF02911 Formyl transferase, C-terminal domain HOO41_10545 PF02075 Crossover junction endodeoxyribonuclease RuvC