locus-tag class description ACRYA_0001 PF00308 Bacterial dnaA protein ACRYA_0001 PF08299 Bacterial dnaA protein helix-turn-helix ACRYA_0001 PF11638 DnaA N-terminal domain ACRYA_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ACRYA_0002 PF02767 DNA polymerase III beta subunit, central domain ACRYA_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ACRYA_0003 PF00204 DNA gyrase B ACRYA_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ACRYA_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_0003 PF01751 Toprim domain ACRYA_0004 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYA_0005 PF14489 QueF-like protein ACRYA_0009 PF13649 Methyltransferase domain ACRYA_0010 PF00005 ABC transporter ACRYA_0010 PF08402 TOBE domain ACRYA_0011 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_0014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYA_0014 PF03459 TOBE domain ACRYA_0016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYA_0016 PF03466 LysR substrate binding domain ACRYA_0020 PF00529 HlyD membrane-fusion protein of T1SS ACRYA_0020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACRYA_0021 PF00873 AcrB/AcrD/AcrF family ACRYA_0022 PF02321 Outer membrane efflux protein ACRYA_0023 PF02203 Tar ligand binding domain homologue ACRYA_0023 PF00672 HAMP domain ACRYA_0023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0026 PF01053 Cys/Met metabolism PLP-dependent enzyme ACRYA_0027 PF02082 Transcriptional regulator ACRYA_0028 PF00291 Pyridoxal-phosphate dependent enzyme ACRYA_0030 PF01507 Phosphoadenosine phosphosulfate reductase family ACRYA_0031 PF01507 Phosphoadenosine phosphosulfate reductase family ACRYA_0032 PF00009 Elongation factor Tu GTP binding domain ACRYA_0034 PF07690 Major Facilitator Superfamily ACRYA_0035 PF00210 Ferritin-like domain ACRYA_0036 PF13419 Haloacid dehalogenase-like hydrolase ACRYA_0037 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACRYA_0037 PF00205 Thiamine pyrophosphate enzyme, central domain ACRYA_0037 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACRYA_0038 PF00171 Aldehyde dehydrogenase family ACRYA_0039 PF03167 Uracil DNA glycosylase superfamily ACRYA_0043 PF00145 C-5 cytosine-specific DNA methylase ACRYA_0047 PF00145 C-5 cytosine-specific DNA methylase ACRYA_0048 PF02796 Helix-turn-helix domain of resolvase ACRYA_0048 PF00239 Resolvase, N terminal domain ACRYA_0049 PF03883 Peroxide stress protein YaaA ACRYA_0053 PF01544 CorA-like Mg2+ transporter protein ACRYA_0056 PF00156 Phosphoribosyl transferase domain ACRYA_0057 PF01765 Ribosome recycling factor ACRYA_0058 PF03840 Preprotein translocase SecG subunit ACRYA_0060 PF02581 Thiamine monophosphate synthase ACRYA_0060 PF17792 ThiD2 family ACRYA_0061 PF01027 Inhibitor of apoptosis-promoting Bax1 ACRYA_0067 PF07650 KH domain ACRYA_0067 PF01926 50S ribosome-binding GTPase ACRYA_0082 PF00482 Type II secretion system (T2SS), protein F ACRYA_0083 PF01544 CorA-like Mg2+ transporter protein ACRYA_0084 PF01227 GTP cyclohydrolase I ACRYA_0085 PF00005 ABC transporter ACRYA_0085 PF08402 TOBE domain ACRYA_0086 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_0087 PF13416 Bacterial extracellular solute-binding protein ACRYA_0088 PF00117 Glutamine amidotransferase class-I ACRYA_0098 PF02677 Epoxyqueuosine reductase QueH ACRYA_0099 PF02684 Lipid-A-disaccharide synthetase ACRYA_0100 PF07977 FabA-like domain ACRYA_0101 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACRYA_0101 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYA_0102 PF07724 AAA domain (Cdc48 subfamily) ACRYA_0102 PF06689 ClpX C4-type zinc finger ACRYA_0102 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYA_0105 PF00677 Lumazine binding domain ACRYA_0106 PF13932 GidA associated domain ACRYA_0106 PF01134 Glucose inhibited division protein A ACRYA_0108 PF01261 Xylose isomerase-like TIM barrel ACRYA_0109 PF00106 short chain dehydrogenase ACRYA_0110 PF00916 Sulfate permease family ACRYA_0110 PF01740 STAS domain ACRYA_0113 PF17758 Proteasomal ATPase OB N-terminal domain ACRYA_0113 PF16450 Proteasomal ATPase OB C-terminal domain ACRYA_0113 PF00004 ATPase family associated with various cellular activities (AAA) ACRYA_0115 PF02621 Menaquinone biosynthesis ACRYA_0116 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACRYA_0117 PF01751 Toprim domain ACRYA_0117 PF13368 Topoisomerase C-terminal repeat ACRYA_0117 PF01131 DNA topoisomerase ACRYA_0120 PF06968 Biotin and Thiamin Synthesis associated domain ACRYA_0120 PF04055 Radical SAM superfamily ACRYA_0121 PF00154 recA bacterial DNA recombination protein ACRYA_0123 PF02719 Polysaccharide biosynthesis protein ACRYA_0124 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYA_0125 PF02348 Cytidylyltransferase ACRYA_0127 PF03102 NeuB family ACRYA_0127 PF08666 SAF domain ACRYA_0131 PF01553 Acyltransferase ACRYA_0131 PF00501 AMP-binding enzyme ACRYA_0131 PF13193 AMP-binding enzyme C-terminal domain ACRYA_0132 PF01467 Cytidylyltransferase-like ACRYA_0135 PF00535 Glycosyl transferase family 2 ACRYA_0137 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACRYA_0137 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACRYA_0137 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACRYA_0140 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYA_0143 PF08889 WbqC-like protein family ACRYA_0147 PF02719 Polysaccharide biosynthesis protein ACRYA_0148 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYA_0150 PF08666 SAF domain ACRYA_0150 PF03102 NeuB family ACRYA_0151 PF02350 UDP-N-acetylglucosamine 2-epimerase ACRYA_0152 PF00483 Nucleotidyl transferase ACRYA_0155 PF02348 Cytidylyltransferase ACRYA_0158 PF00669 Bacterial flagellin N-terminal helical region ACRYA_0158 PF07196 Flagellin hook IN motif ACRYA_0158 PF00700 Bacterial flagellin C-terminal helical region ACRYA_0159 PF00669 Bacterial flagellin N-terminal helical region ACRYA_0159 PF00700 Bacterial flagellin C-terminal helical region ACRYA_0159 PF07196 Flagellin hook IN motif ACRYA_0160 PF05958 tRNA (Uracil-5-)-methyltransferase ACRYA_0161 PF00270 DEAD/DEAH box helicase ACRYA_0161 PF17191 RecG wedge domain ACRYA_0161 PF00271 Helicase conserved C-terminal domain ACRYA_0163 PF14602 Hexapeptide repeat of succinyl-transferase ACRYA_0163 PF12804 MobA-like NTP transferase domain ACRYA_0164 PF02441 Flavoprotein ACRYA_0164 PF04127 DNA / pantothenate metabolism flavoprotein ACRYA_0165 PF01255 Putative undecaprenyl diphosphate synthase ACRYA_0168 PF01416 tRNA pseudouridine synthase ACRYA_0170 PF01628 HrcA protein C terminal domain ACRYA_0171 PF01025 GrpE ACRYA_0172 PF00012 Hsp70 protein ACRYA_0176 PF04028 Domain of unknown function (DUF374) ACRYA_0177 PF04055 Radical SAM superfamily ACRYA_0177 PF01938 TRAM domain ACRYA_0177 PF00919 Uncharacterized protein family UPF0004 ACRYA_0179 PF13184 NusA-like KH domain ACRYA_0179 PF08529 NusA N-terminal domain ACRYA_0180 PF09190 DALR domain ACRYA_0180 PF01406 tRNA synthetases class I (C) catalytic domain ACRYA_0181 PF03960 ArsC family ACRYA_0182 PF02686 Glu-tRNAGln amidotransferase C subunit ACRYA_0183 PF01702 Queuine tRNA-ribosyltransferase ACRYA_0186 PF01225 Mur ligase family, catalytic domain ACRYA_0186 PF02875 Mur ligase family, glutamate ligase domain ACRYA_0186 PF08245 Mur ligase middle domain ACRYA_0194 PF02463 RecF/RecN/SMC N terminal domain ACRYA_0195 PF00580 UvrD/REP helicase N-terminal domain ACRYA_0195 PF13361 UvrD-like helicase C-terminal domain ACRYA_0199 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACRYA_0199 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACRYA_0200 PF00773 RNB domain ACRYA_0202 PF06144 DNA polymerase III, delta subunit ACRYA_0203 PF01250 Ribosomal protein S6 ACRYA_0204 PF00436 Single-strand binding protein family ACRYA_0205 PF01084 Ribosomal protein S18 ACRYA_0206 PF03462 PCRF domain ACRYA_0206 PF00472 RF-1 domain ACRYA_0209 PF02660 Glycerol-3-phosphate acyltransferase ACRYA_0210 PF02445 Quinolinate synthetase A protein ACRYA_0211 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACRYA_0211 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACRYA_0214 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACRYA_0216 PF00288 GHMP kinases N terminal domain ACRYA_0216 PF08544 GHMP kinases C terminal ACRYA_0218 PF04760 Translation initiation factor IF-2, N-terminal region ACRYA_0218 PF11987 Translation-initiation factor 2 ACRYA_0218 PF00009 Elongation factor Tu GTP binding domain ACRYA_0219 PF02033 Ribosome-binding factor A ACRYA_0220 PF02576 RimP N-terminal domain ACRYA_0221 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACRYA_0221 PF01872 RibD C-terminal domain ACRYA_0222 PF09285 Elongation factor P, C-terminal ACRYA_0222 PF08207 Elongation factor P (EF-P) KOW-like domain ACRYA_0222 PF01132 Elongation factor P (EF-P) OB domain ACRYA_0223 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACRYA_0223 PF01842 ACT domain ACRYA_0223 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACRYA_0224 PF00575 S1 RNA binding domain ACRYA_0225 PF02401 LytB protein ACRYA_0226 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACRYA_0227 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACRYA_0227 PF01588 Putative tRNA binding domain ACRYA_0227 PF03147 Ferredoxin-fold anticodon binding domain ACRYA_0227 PF03484 tRNA synthetase B5 domain ACRYA_0228 PF01409 tRNA synthetases class II core domain (F) ACRYA_0228 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACRYA_0229 PF01230 HIT domain ACRYA_0230 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACRYA_0231 PF02801 Beta-ketoacyl synthase, C-terminal domain ACRYA_0231 PF00109 Beta-ketoacyl synthase, N-terminal domain ACRYA_0232 PF00550 Phosphopantetheine attachment site ACRYA_0236 PF06508 Queuosine biosynthesis protein QueC ACRYA_0240 PF00032 Cytochrome b(C-terminal)/b6/petD ACRYA_0240 PF00033 Cytochrome b/b6/petB ACRYA_0241 PF00355 Rieske [2Fe-2S] domain ACRYA_0242 PF00291 Pyridoxal-phosphate dependent enzyme ACRYA_0243 PF00696 Amino acid kinase family ACRYA_0244 PF00580 UvrD/REP helicase N-terminal domain ACRYA_0244 PF13361 UvrD-like helicase C-terminal domain ACRYA_0244 PF12705 PD-(D/E)XK nuclease superfamily ACRYA_0246 PF00119 ATP synthase A chain ACRYA_0247 PF00291 Pyridoxal-phosphate dependent enzyme ACRYA_0247 PF13291 ACT domain ACRYA_0248 PF01116 Fructose-bisphosphate aldolase class-II ACRYA_0250 PF00072 Response regulator receiver domain ACRYA_0250 PF00486 Transcriptional regulatory protein, C terminal ACRYA_0251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_0251 PF00512 His Kinase A (phospho-acceptor) domain ACRYA_0252 PF01545 Cation efflux family ACRYA_0252 PF16916 Dimerisation domain of Zinc Transporter ACRYA_0253 PF02403 Seryl-tRNA synthetase N-terminal domain ACRYA_0253 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACRYA_0255 PF00563 EAL domain ACRYA_0255 PF08495 FIST N domain ACRYA_0255 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_0255 PF10442 FIST C domain ACRYA_0259 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ACRYA_0260 PF13237 4Fe-4S dicluster domain ACRYA_0260 PF12801 4Fe-4S binding domain ACRYA_0261 PF12800 4Fe-4S binding domain ACRYA_0261 PF12838 4Fe-4S dicluster domain ACRYA_0262 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACRYA_0262 PF00384 Molybdopterin oxidoreductase ACRYA_0262 PF01568 Molydopterin dinucleotide binding domain ACRYA_0262 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACRYA_0265 PF02885 Glycosyl transferase family, helical bundle domain ACRYA_0265 PF00591 Glycosyl transferase family, a/b domain ACRYA_0266 PF06463 Molybdenum Cofactor Synthesis C ACRYA_0266 PF04055 Radical SAM superfamily ACRYA_0267 PF00312 Ribosomal protein S15 ACRYA_0271 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0271 PF08447 PAS fold ACRYA_0272 PF00672 HAMP domain ACRYA_0272 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0272 PF02203 Tar ligand binding domain homologue ACRYA_0277 PF01575 MaoC like domain ACRYA_0278 PF00501 AMP-binding enzyme ACRYA_0278 PF13193 AMP-binding enzyme C-terminal domain ACRYA_0284 PF02617 ATP-dependent Clp protease adaptor protein ClpS ACRYA_0285 PF07724 AAA domain (Cdc48 subfamily) ACRYA_0285 PF00004 ATPase family associated with various cellular activities (AAA) ACRYA_0285 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYA_0285 PF02861 Clp amino terminal domain, pathogenicity island component ACRYA_0285 PF17871 AAA lid domain ACRYA_0293 PF00113 Enolase, C-terminal TIM barrel domain ACRYA_0293 PF03952 Enolase, N-terminal domain ACRYA_0296 PF07690 Major Facilitator Superfamily ACRYA_0298 PF00164 Ribosomal protein S12/S23 ACRYA_0299 PF00177 Ribosomal protein S7p/S5e ACRYA_0300 PF03144 Elongation factor Tu domain 2 ACRYA_0300 PF00679 Elongation factor G C-terminus ACRYA_0300 PF14492 Elongation Factor G, domain II ACRYA_0300 PF03764 Elongation factor G, domain IV ACRYA_0300 PF00009 Elongation factor Tu GTP binding domain ACRYA_0301 PF01513 ATP-NAD kinase ACRYA_0302 PF13476 AAA domain ACRYA_0303 PF00672 HAMP domain ACRYA_0303 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0303 PF17200 Single Cache domain 2 ACRYA_0304 PF01136 Peptidase family U32 ACRYA_0306 PF00731 AIR carboxylase ACRYA_0308 PF02091 Glycyl-tRNA synthetase alpha subunit ACRYA_0309 PF01784 NIF3 (NGG1p interacting factor 3) ACRYA_0311 PF02390 Putative methyltransferase ACRYA_0311 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACRYA_0312 PF00849 RNA pseudouridylate synthase ACRYA_0313 PF00448 SRP54-type protein, GTPase domain ACRYA_0313 PF02881 SRP54-type protein, helical bundle domain ACRYA_0313 PF02978 Signal peptide binding domain ACRYA_0314 PF00886 Ribosomal protein S16 ACRYA_0316 PF01782 RimM N-terminal domain ACRYA_0319 PF00460 Flagella basal body rod protein ACRYA_0319 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYA_0320 PF00072 Response regulator receiver domain ACRYA_0322 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYA_0322 PF00460 Flagella basal body rod protein ACRYA_0323 PF00460 Flagella basal body rod protein ACRYA_0324 PF01514 Secretory protein of YscJ/FliF family ACRYA_0324 PF08345 Flagellar M-ring protein C-terminal ACRYA_0325 PF01706 FliG C-terminal domain ACRYA_0325 PF14841 FliG middle domain ACRYA_0325 PF14842 FliG N-terminal domain ACRYA_0327 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACRYA_0329 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYA_0329 PF07559 Flagellar basal body protein FlaE ACRYA_0329 PF07196 Flagellin hook IN motif ACRYA_0329 PF00460 Flagella basal body rod protein ACRYA_0330 PF07559 Flagellar basal body protein FlaE ACRYA_0330 PF00460 Flagella basal body rod protein ACRYA_0330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYA_0330 PF07196 Flagellin hook IN motif ACRYA_0334 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACRYA_0338 PF00448 SRP54-type protein, GTPase domain ACRYA_0339 PF10609 NUBPL iron-transfer P-loop NTPase ACRYA_0341 PF02049 Flagellar hook-basal body complex protein FliE ACRYA_0342 PF00460 Flagella basal body rod protein ACRYA_0342 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACRYA_0345 PF01312 FlhB HrpN YscU SpaS Family ACRYA_0347 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYA_0347 PF18269 T3SS EscN ATPase C-terminal domain ACRYA_0349 PF00771 FHIPEP family ACRYA_0351 PF01613 Flavin reductase like domain ACRYA_0353 PF02203 Tar ligand binding domain homologue ACRYA_0353 PF00672 HAMP domain ACRYA_0353 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0354 PF02203 Tar ligand binding domain homologue ACRYA_0354 PF00672 HAMP domain ACRYA_0354 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0355 PF08447 PAS fold ACRYA_0356 PF00672 HAMP domain ACRYA_0356 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0356 PF02203 Tar ligand binding domain homologue ACRYA_0358 PF03707 Bacterial signalling protein N terminal repeat ACRYA_0358 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_0358 PF00563 EAL domain ACRYA_0359 PF01717 Cobalamin-independent synthase, Catalytic domain ACRYA_0359 PF08267 Cobalamin-independent synthase, N-terminal domain ACRYA_0361 PF01746 tRNA (Guanine-1)-methyltransferase ACRYA_0362 PF01245 Ribosomal protein L19 ACRYA_0363 PF09335 SNARE associated Golgi protein ACRYA_0364 PF00155 Aminotransferase class I and II ACRYA_0365 PF12833 Helix-turn-helix domain ACRYA_0367 PF01042 Endoribonuclease L-PSP ACRYA_0368 PF06738 Putative threonine/serine exporter ACRYA_0368 PF12821 Threonine/Serine exporter, ThrE ACRYA_0369 PF06738 Putative threonine/serine exporter ACRYA_0372 PF01618 MotA/TolQ/ExbB proton channel family ACRYA_0373 PF02472 Biopolymer transport protein ExbD/TolR ACRYA_0374 PF02086 D12 class N6 adenine-specific DNA methyltransferase ACRYA_0377 PF00171 Aldehyde dehydrogenase family ACRYA_0378 PF02659 Putative manganese efflux pump ACRYA_0380 PF01740 STAS domain ACRYA_0380 PF00916 Sulfate permease family ACRYA_0381 PF00579 tRNA synthetases class I (W and Y) ACRYA_0383 PF01594 AI-2E family transporter ACRYA_0385 PF01634 ATP phosphoribosyltransferase ACRYA_0386 PF03309 Type III pantothenate kinase ACRYA_0387 PF05538 Campylobacter major outer membrane protein ACRYA_0388 PF01202 Shikimate kinase ACRYA_0389 PF00815 Histidinol dehydrogenase ACRYA_0391 PF00348 Polyprenyl synthetase ACRYA_0392 PF01488 Shikimate / quinate 5-dehydrogenase ACRYA_0392 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACRYA_0392 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACRYA_0393 PF04073 Aminoacyl-tRNA editing domain ACRYA_0393 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACRYA_0393 PF03129 Anticodon binding domain ACRYA_0394 PF00924 Mechanosensitive ion channel ACRYA_0394 PF05552 Conserved TM helix ACRYA_0395 PF01743 Poly A polymerase head domain ACRYA_0395 PF12627 Probable RNA and SrmB- binding site of polymerase A ACRYA_0397 PF02699 Preprotein translocase subunit ACRYA_0398 PF02355 Protein export membrane protein ACRYA_0399 PF07549 SecD/SecF GG Motif ACRYA_0399 PF02355 Protein export membrane protein ACRYA_0402 PF00691 OmpA family ACRYA_0402 PF13677 Membrane MotB of proton-channel complex MotA/MotB ACRYA_0403 PF01618 MotA/TolQ/ExbB proton channel family ACRYA_0405 PF09334 tRNA synthetases class I (M) ACRYA_0405 PF13603 Leucyl-tRNA synthetase, Domain 2 ACRYA_0405 PF00133 tRNA synthetases class I (I, L, M and V) ACRYA_0407 PF08245 Mur ligase middle domain ACRYA_0411 PF17757 UvrB interaction domain ACRYA_0411 PF02559 CarD-like/TRCF domain ACRYA_0411 PF03461 TRCF domain ACRYA_0411 PF00271 Helicase conserved C-terminal domain ACRYA_0411 PF00270 DEAD/DEAH box helicase ACRYA_0416 PF08360 QacR-like protein, C-terminal region ACRYA_0416 PF00440 Bacterial regulatory proteins, tetR family ACRYA_0418 PF01381 Helix-turn-helix ACRYA_0423 PF04357 TamB, inner membrane protein subunit of TAM complex ACRYA_0424 PF00912 Transglycosylase ACRYA_0424 PF00905 Penicillin binding protein transpeptidase domain ACRYA_0425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACRYA_0425 PF00005 ABC transporter ACRYA_0426 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACRYA_0426 PF01676 Metalloenzyme superfamily ACRYA_0427 PF00953 Glycosyl transferase family 4 ACRYA_0427 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ACRYA_0428 PF08245 Mur ligase middle domain ACRYA_0433 PF03144 Elongation factor Tu domain 2 ACRYA_0433 PF03143 Elongation factor Tu C-terminal domain ACRYA_0433 PF00009 Elongation factor Tu GTP binding domain ACRYA_0434 PF00471 Ribosomal protein L33 ACRYA_0437 PF02357 Transcription termination factor nusG ACRYA_0438 PF00298 Ribosomal protein L11, RNA binding domain ACRYA_0438 PF03946 Ribosomal protein L11, N-terminal domain ACRYA_0439 PF00687 Ribosomal protein L1p/L10e family ACRYA_0440 PF00466 Ribosomal protein L10 ACRYA_0441 PF00542 Ribosomal protein L7/L12 C-terminal domain ACRYA_0441 PF16320 Ribosomal protein L7/L12 dimerisation domain ACRYA_0442 PF04563 RNA polymerase beta subunit ACRYA_0442 PF04565 RNA polymerase Rpb2, domain 3 ACRYA_0442 PF10385 RNA polymerase beta subunit external 1 domain ACRYA_0442 PF00562 RNA polymerase Rpb2, domain 6 ACRYA_0442 PF04560 RNA polymerase Rpb2, domain 7 ACRYA_0442 PF04561 RNA polymerase Rpb2, domain 2 ACRYA_0443 PF04997 RNA polymerase Rpb1, domain 1 ACRYA_0443 PF00623 RNA polymerase Rpb1, domain 2 ACRYA_0443 PF05000 RNA polymerase Rpb1, domain 4 ACRYA_0443 PF04998 RNA polymerase Rpb1, domain 5 ACRYA_0443 PF04983 RNA polymerase Rpb1, domain 3 ACRYA_0446 PF00589 Phage integrase family ACRYA_0446 PF13356 Arm DNA-binding domain ACRYA_0468 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACRYA_0471 PF00313 'Cold-shock' DNA-binding domain ACRYA_0473 PF00578 AhpC/TSA family ACRYA_0473 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACRYA_0474 PF00085 Thioredoxin ACRYA_0477 PF00255 Glutathione peroxidase ACRYA_0478 PF00106 short chain dehydrogenase ACRYA_0480 PF01593 Flavin containing amine oxidoreductase ACRYA_0484 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ACRYA_0484 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACRYA_0484 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACRYA_0485 PF00374 Nickel-dependent hydrogenase ACRYA_0486 PF01292 Prokaryotic cytochrome b561 ACRYA_0487 PF01750 Hydrogenase maturation protease ACRYA_0492 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACRYA_0493 PF01455 HupF/HypC family ACRYA_0494 PF01924 Hydrogenase formation hypA family ACRYA_0496 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACRYA_0496 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACRYA_0498 PF00586 AIR synthase related protein, N-terminal domain ACRYA_0498 PF02769 AIR synthase related protein, C-terminal domain ACRYA_0499 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ACRYA_0501 PF01891 Cobalt uptake substrate-specific transmembrane region ACRYA_0501 PF13190 PDGLE domain ACRYA_0504 PF00005 ABC transporter ACRYA_0505 PF00072 Response regulator receiver domain ACRYA_0505 PF00486 Transcriptional regulatory protein, C terminal ACRYA_0508 PF00563 EAL domain ACRYA_0508 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_0508 PF03707 Bacterial signalling protein N terminal repeat ACRYA_0510 PF00793 DAHP synthetase I family ACRYA_0512 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACRYA_0514 PF03631 Virulence factor BrkB ACRYA_0515 PF02913 FAD linked oxidases, C-terminal domain ACRYA_0515 PF01565 FAD binding domain ACRYA_0517 PF00578 AhpC/TSA family ACRYA_0518 PF13649 Methyltransferase domain ACRYA_0519 PF06574 FAD synthetase ACRYA_0519 PF01687 Riboflavin kinase ACRYA_0520 PF01728 FtsJ-like methyltransferase ACRYA_0520 PF01479 S4 domain ACRYA_0521 PF09186 Domain of unknown function (DUF1949) ACRYA_0521 PF01205 Uncharacterized protein family UPF0029 ACRYA_0522 PF00263 Bacterial type II and III secretion system protein ACRYA_0522 PF03958 Bacterial type II/III secretion system short domain ACRYA_0525 PF00459 Inositol monophosphatase family ACRYA_0526 PF00037 4Fe-4S binding domain ACRYA_0528 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACRYA_0532 PF00483 Nucleotidyl transferase ACRYA_0533 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACRYA_0534 PF04321 RmlD substrate binding domain ACRYA_0535 PF16363 GDP-mannose 4,6 dehydratase ACRYA_0537 PF00535 Glycosyl transferase family 2 ACRYA_0538 PF13439 Glycosyltransferase Family 4 ACRYA_0538 PF00534 Glycosyl transferases group 1 ACRYA_0539 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACRYA_0542 PF00535 Glycosyl transferase family 2 ACRYA_0543 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACRYA_0545 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACRYA_0546 PF13580 SIS domain ACRYA_0547 PF01467 Cytidylyltransferase-like ACRYA_0547 PF00294 pfkB family carbohydrate kinase ACRYA_0548 PF01370 NAD dependent epimerase/dehydratase family ACRYA_0551 PF00830 Ribosomal L28 family ACRYA_0553 PF01960 ArgJ family ACRYA_0555 PF00521 DNA gyrase/topoisomerase IV, subunit A ACRYA_0555 PF03989 DNA gyrase C-terminal domain, beta-propeller ACRYA_0556 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACRYA_0556 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACRYA_0558 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACRYA_0568 PF00005 ABC transporter ACRYA_0573 PF00149 Calcineurin-like phosphoesterase ACRYA_0574 PF00486 Transcriptional regulatory protein, C terminal ACRYA_0574 PF00072 Response regulator receiver domain ACRYA_0575 PF18719 ArlS sensor domain ACRYA_0575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_0575 PF00512 His Kinase A (phospho-acceptor) domain ACRYA_0576 PF00005 ABC transporter ACRYA_0577 PF00950 ABC 3 transport family ACRYA_0578 PF17783 CvfB-like winged helix domain ACRYA_0578 PF13509 S1 domain ACRYA_0579 PF08534 Redoxin ACRYA_0583 PF10458 Valyl tRNA synthetase tRNA binding arm ACRYA_0583 PF00133 tRNA synthetases class I (I, L, M and V) ACRYA_0583 PF08264 Anticodon-binding domain of tRNA ACRYA_0584 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0584 PF08447 PAS fold ACRYA_0584 PF13426 PAS domain ACRYA_0586 PF07690 Major Facilitator Superfamily ACRYA_0587 PF01725 Ham1 family ACRYA_0591 PF03807 NADP oxidoreductase coenzyme F420-dependent ACRYA_0591 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACRYA_0592 PF13525 Outer membrane lipoprotein ACRYA_0593 PF05362 Lon protease (S16) C-terminal proteolytic domain ACRYA_0593 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACRYA_0593 PF00004 ATPase family associated with various cellular activities (AAA) ACRYA_0598 PF02785 Biotin carboxylase C-terminal domain ACRYA_0598 PF00289 Biotin carboxylase, N-terminal domain ACRYA_0598 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACRYA_0600 PF02657 Fe-S metabolism associated domain ACRYA_0601 PF00266 Aminotransferase class-V ACRYA_0603 PF00005 ABC transporter ACRYA_0604 PF01458 Uncharacterized protein family (UPF0051) ACRYA_0605 PF01592 NifU-like N terminal domain ACRYA_0605 PF04324 BFD-like [2Fe-2S] binding domain ACRYA_0605 PF01106 NifU-like domain ACRYA_0606 PF03448 MgtE intracellular N domain ACRYA_0606 PF01769 Divalent cation transporter ACRYA_0606 PF00571 CBS domain ACRYA_0607 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_0608 PF14698 Argininosuccinate lyase C-terminal ACRYA_0608 PF00206 Lyase ACRYA_0609 PF12344 Ultra-violet resistance protein B ACRYA_0609 PF00271 Helicase conserved C-terminal domain ACRYA_0609 PF04851 Type III restriction enzyme, res subunit ACRYA_0609 PF02151 UvrB/uvrC motif ACRYA_0609 PF17757 UvrB interaction domain ACRYA_0611 PF01272 Transcription elongation factor, GreA/GreB, C-term ACRYA_0611 PF03449 Transcription elongation factor, N-terminal ACRYA_0612 PF00899 ThiF family ACRYA_0613 PF00072 Response regulator receiver domain ACRYA_0613 PF01584 CheW-like domain ACRYA_0616 PF10576 Iron-sulfur binding domain of endonuclease III ACRYA_0616 PF00730 HhH-GPD superfamily base excision DNA repair protein ACRYA_0616 PF00633 Helix-hairpin-helix motif ACRYA_0617 PF00586 AIR synthase related protein, N-terminal domain ACRYA_0617 PF02769 AIR synthase related protein, C-terminal domain ACRYA_0618 PF01142 tRNA pseudouridine synthase D (TruD) ACRYA_0620 PF02203 Tar ligand binding domain homologue ACRYA_0620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0620 PF00672 HAMP domain ACRYA_0621 PF07499 RuvA, C-terminal domain ACRYA_0621 PF01330 RuvA N terminal domain ACRYA_0622 PF01820 D-ala D-ala ligase N-terminus ACRYA_0622 PF07478 D-ala D-ala ligase C-terminus ACRYA_0624 PF08245 Mur ligase middle domain ACRYA_0624 PF02875 Mur ligase family, glutamate ligase domain ACRYA_0627 PF00338 Ribosomal protein S10p/S20e ACRYA_0628 PF00297 Ribosomal protein L3 ACRYA_0629 PF00573 Ribosomal protein L4/L1 family ACRYA_0630 PF00276 Ribosomal protein L23 ACRYA_0631 PF03947 Ribosomal Proteins L2, C-terminal domain ACRYA_0631 PF00181 Ribosomal Proteins L2, RNA binding domain ACRYA_0632 PF00203 Ribosomal protein S19 ACRYA_0633 PF00237 Ribosomal protein L22p/L17e ACRYA_0634 PF07650 KH domain ACRYA_0634 PF00189 Ribosomal protein S3, C-terminal domain ACRYA_0635 PF00252 Ribosomal protein L16p/L10e ACRYA_0636 PF00831 Ribosomal L29 protein ACRYA_0637 PF00366 Ribosomal protein S17 ACRYA_0638 PF00238 Ribosomal protein L14p/L23e ACRYA_0639 PF00467 KOW motif ACRYA_0639 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACRYA_0640 PF00281 Ribosomal protein L5 ACRYA_0640 PF00673 ribosomal L5P family C-terminus ACRYA_0641 PF00253 Ribosomal protein S14p/S29e ACRYA_0642 PF00410 Ribosomal protein S8 ACRYA_0643 PF00347 Ribosomal protein L6 ACRYA_0644 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACRYA_0645 PF00333 Ribosomal protein S5, N-terminal domain ACRYA_0645 PF03719 Ribosomal protein S5, C-terminal domain ACRYA_0646 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACRYA_0647 PF00344 SecY translocase ACRYA_0648 PF00557 Metallopeptidase family M24 ACRYA_0649 PF01176 Translation initiation factor 1A / IF-1 ACRYA_0650 PF03167 Uracil DNA glycosylase superfamily ACRYA_0652 PF02938 GAD domain ACRYA_0652 PF00152 tRNA synthetases class II (D, K and N) ACRYA_0652 PF01336 OB-fold nucleic acid binding domain ACRYA_0653 PF04055 Radical SAM superfamily ACRYA_0653 PF08497 Radical SAM N-terminal ACRYA_0655 PF00109 Beta-ketoacyl synthase, N-terminal domain ACRYA_0655 PF02801 Beta-ketoacyl synthase, C-terminal domain ACRYA_0658 PF00005 ABC transporter ACRYA_0664 PF00221 Aromatic amino acid lyase ACRYA_0668 PF00550 Phosphopantetheine attachment site ACRYA_0669 PF01494 FAD binding domain ACRYA_0670 PF02801 Beta-ketoacyl synthase, C-terminal domain ACRYA_0670 PF00109 Beta-ketoacyl synthase, N-terminal domain ACRYA_0673 PF00561 alpha/beta hydrolase fold ACRYA_0673 PF08386 TAP-like protein ACRYA_0674 PF00891 O-methyltransferase domain ACRYA_0675 PF00700 Bacterial flagellin C-terminal helical region ACRYA_0675 PF00669 Bacterial flagellin N-terminal helical region ACRYA_0677 PF02954 Bacterial regulatory protein, Fis family ACRYA_0677 PF00072 Response regulator receiver domain ACRYA_0677 PF00158 Sigma-54 interaction domain ACRYA_0679 PF00563 EAL domain ACRYA_0679 PF01590 GAF domain ACRYA_0679 PF00360 Phytochrome region ACRYA_0679 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_0680 PF04650 YSIRK type signal peptide ACRYA_0680 PF07501 G5 domain ACRYA_0680 PF07581 The GLUG motif ACRYA_0680 PF00746 LPXTG cell wall anchor motif ACRYA_0680 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region ACRYA_0680 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region ACRYA_0682 PF00672 HAMP domain ACRYA_0682 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0682 PF02203 Tar ligand binding domain homologue ACRYA_0683 PF01965 DJ-1/PfpI family ACRYA_0684 PF12706 Beta-lactamase superfamily domain ACRYA_0685 PF01926 50S ribosome-binding GTPase ACRYA_0685 PF06071 Protein of unknown function (DUF933) ACRYA_0686 PF08668 HDOD domain ACRYA_0689 PF06865 Pyrimidine/purine nucleoside phosphorylase ACRYA_0692 PF01925 Sulfite exporter TauE/SafE ACRYA_0693 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYA_0693 PF06426 Serine acetyltransferase, N-terminal ACRYA_0694 PF17944 Arginine decarboxylase C-terminal helical extension ACRYA_0694 PF17810 Arginine decarboxylase helical bundle domain ACRYA_0694 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACRYA_0695 PF03129 Anticodon binding domain ACRYA_0695 PF13393 Histidyl-tRNA synthetase ACRYA_0696 PF02223 Thymidylate kinase ACRYA_0697 PF01467 Cytidylyltransferase-like ACRYA_0698 PF02441 Flavoprotein ACRYA_0700 PF03948 Ribosomal protein L9, C-terminal domain ACRYA_0700 PF01281 Ribosomal protein L9, N-terminal domain ACRYA_0701 PF00227 Proteasome subunit ACRYA_0702 PF07724 AAA domain (Cdc48 subfamily) ACRYA_0702 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYA_0706 PF03330 Lytic transglycolase ACRYA_0706 PF05036 Sporulation related domain ACRYA_0707 PF00475 Imidazoleglycerol-phosphate dehydratase ACRYA_0711 PF01926 50S ribosome-binding GTPase ACRYA_0712 PF00583 Acetyltransferase (GNAT) family ACRYA_0714 PF01312 FlhB HrpN YscU SpaS Family ACRYA_0716 PF00682 HMGL-like ACRYA_0717 PF00075 RNase H ACRYA_0718 PF02203 Tar ligand binding domain homologue ACRYA_0718 PF00672 HAMP domain ACRYA_0718 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0721 PF00271 Helicase conserved C-terminal domain ACRYA_0721 PF00270 DEAD/DEAH box helicase ACRYA_0722 PF00403 Heavy-metal-associated domain ACRYA_0724 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYA_0724 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACRYA_0725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACRYA_0725 PF02817 e3 binding domain ACRYA_0725 PF00364 Biotin-requiring enzyme ACRYA_0726 PF17831 Pyruvate dehydrogenase E1 component middle domain ACRYA_0726 PF00456 Transketolase, thiamine diphosphate binding domain ACRYA_0728 PF04055 Radical SAM superfamily ACRYA_0729 PF16326 ABC transporter C-terminal domain ACRYA_0729 PF12848 ABC transporter ACRYA_0729 PF00005 ABC transporter ACRYA_0730 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ACRYA_0730 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYA_0730 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACRYA_0732 PF00817 impB/mucB/samB family ACRYA_0732 PF11799 impB/mucB/samB family C-terminal domain ACRYA_0734 PF14490 Helix-hairpin-helix containing domain ACRYA_0734 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ACRYA_0734 PF13538 UvrD-like helicase C-terminal domain ACRYA_0736 PF02491 SHS2 domain inserted in FTSA ACRYA_0737 PF12327 FtsZ family, C-terminal domain ACRYA_0737 PF00091 Tubulin/FtsZ family, GTPase domain ACRYA_0740 PF00561 alpha/beta hydrolase fold ACRYA_0742 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACRYA_0742 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACRYA_0742 PF02142 MGS-like domain ACRYA_0754 PF00589 Phage integrase family ACRYA_0754 PF12167 Arm DNA-binding domain ACRYA_0756 PF01050 Mannose-6-phosphate isomerase ACRYA_0756 PF00483 Nucleotidyl transferase ACRYA_0758 PF16363 GDP-mannose 4,6 dehydratase ACRYA_0759 PF01370 NAD dependent epimerase/dehydratase family ACRYA_0760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYA_0762 PF00664 ABC transporter transmembrane region ACRYA_0762 PF00005 ABC transporter ACRYA_0763 PF00483 Nucleotidyl transferase ACRYA_0764 PF16363 GDP-mannose 4,6 dehydratase ACRYA_0765 PF05523 WxcM-like, C-terminal ACRYA_0771 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYA_0772 PF00535 Glycosyl transferase family 2 ACRYA_0773 PF01531 Glycosyl transferase family 11 ACRYA_0774 PF13439 Glycosyltransferase Family 4 ACRYA_0774 PF00534 Glycosyl transferases group 1 ACRYA_0776 PF00535 Glycosyl transferase family 2 ACRYA_0777 PF00534 Glycosyl transferases group 1 ACRYA_0777 PF13477 Glycosyl transferase 4-like ACRYA_0778 PF02397 Bacterial sugar transferase ACRYA_0780 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ACRYA_0781 PF16363 GDP-mannose 4,6 dehydratase ACRYA_0785 PF00342 Phosphoglucose isomerase ACRYA_0786 PF00483 Nucleotidyl transferase ACRYA_0787 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACRYA_0787 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACRYA_0787 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACRYA_0787 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACRYA_0788 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ACRYA_0794 PF00490 Delta-aminolevulinic acid dehydratase ACRYA_0795 PF00925 GTP cyclohydrolase II ACRYA_0796 PF02527 rRNA small subunit methyltransferase G ACRYA_0800 PF02092 Glycyl-tRNA synthetase beta subunit ACRYA_0801 PF04542 Sigma-70 region 2 ACRYA_0801 PF00140 Sigma-70 factor, region 1.2 ACRYA_0801 PF04545 Sigma-70, region 4 ACRYA_0801 PF04539 Sigma-70 region 3 ACRYA_0802 PF00694 Aconitase C-terminal domain ACRYA_0803 PF00180 Isocitrate/isopropylmalate dehydrogenase ACRYA_0806 PF00444 Ribosomal protein L36 ACRYA_0807 PF00416 Ribosomal protein S13/S18 ACRYA_0808 PF00411 Ribosomal protein S11 ACRYA_0809 PF00163 Ribosomal protein S4/S9 N-terminal domain ACRYA_0809 PF01479 S4 domain ACRYA_0810 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACRYA_0810 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACRYA_0810 PF01000 RNA polymerase Rpb3/RpoA insert domain ACRYA_0811 PF01196 Ribosomal protein L17 ACRYA_0812 PF01425 Amidase ACRYA_0813 PF00571 CBS domain ACRYA_0813 PF00478 IMP dehydrogenase / GMP reductase domain ACRYA_0814 PF02203 Tar ligand binding domain homologue ACRYA_0814 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0814 PF00672 HAMP domain ACRYA_0815 PF03120 NAD-dependent DNA ligase OB-fold domain ACRYA_0815 PF12826 Helix-hairpin-helix motif ACRYA_0815 PF00533 BRCA1 C Terminus (BRCT) domain ACRYA_0815 PF01653 NAD-dependent DNA ligase adenylation domain ACRYA_0816 PF02203 Tar ligand binding domain homologue ACRYA_0816 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0816 PF00672 HAMP domain ACRYA_0817 PF03738 Glutathionylspermidine synthase preATP-grasp ACRYA_0819 PF00271 Helicase conserved C-terminal domain ACRYA_0819 PF00270 DEAD/DEAH box helicase ACRYA_0820 PF00691 OmpA family ACRYA_0820 PF05736 OprF membrane domain ACRYA_0821 PF00005 ABC transporter ACRYA_0821 PF00664 ABC transporter transmembrane region ACRYA_0821 PF03412 Peptidase C39 family ACRYA_0822 PF13533 Biotin-lipoyl like ACRYA_0823 PF17874 MalT-like TPR region ACRYA_0823 PF00196 Bacterial regulatory proteins, luxR family ACRYA_0824 PF08501 Shikimate dehydrogenase substrate binding domain ACRYA_0826 PF02578 Multi-copper polyphenol oxidoreductase laccase ACRYA_0827 PF01842 ACT domain ACRYA_0827 PF00551 Formyl transferase ACRYA_0828 PF00588 SpoU rRNA Methylase family ACRYA_0829 PF05525 Branched-chain amino acid transport protein ACRYA_0834 PF00486 Transcriptional regulatory protein, C terminal ACRYA_0834 PF00072 Response regulator receiver domain ACRYA_0835 PF00672 HAMP domain ACRYA_0835 PF00512 His Kinase A (phospho-acceptor) domain ACRYA_0835 PF13426 PAS domain ACRYA_0835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_0839 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYA_0840 PF00550 Phosphopantetheine attachment site ACRYA_0842 PF03062 MBOAT, membrane-bound O-acyltransferase family ACRYA_0843 PF00501 AMP-binding enzyme ACRYA_0843 PF13193 AMP-binding enzyme C-terminal domain ACRYA_0845 PF00795 Carbon-nitrogen hydrolase ACRYA_0848 PF00171 Aldehyde dehydrogenase family ACRYA_0849 PF08543 Phosphomethylpyrimidine kinase ACRYA_0849 PF02581 Thiamine monophosphate synthase ACRYA_0853 PF13419 Haloacid dehalogenase-like hydrolase ACRYA_0854 PF03641 Possible lysine decarboxylase ACRYA_0858 PF01709 Transcriptional regulator ACRYA_0859 PF00664 ABC transporter transmembrane region ACRYA_0859 PF00005 ABC transporter ACRYA_0861 PF00072 Response regulator receiver domain ACRYA_0861 PF00486 Transcriptional regulatory protein, C terminal ACRYA_0862 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_0864 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0864 PF08447 PAS fold ACRYA_0865 PF02203 Tar ligand binding domain homologue ACRYA_0865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_0865 PF00672 HAMP domain ACRYA_0866 PF01168 Alanine racemase, N-terminal domain ACRYA_0867 PF02163 Peptidase family M50 ACRYA_0867 PF17820 PDZ domain ACRYA_0868 PF01066 CDP-alcohol phosphatidyltransferase ACRYA_0870 PF00701 Dihydrodipicolinate synthetase family ACRYA_0872 PF01180 Dihydroorotate dehydrogenase ACRYA_0873 PF00005 ABC transporter ACRYA_0873 PF00664 ABC transporter transmembrane region ACRYA_0874 PF03023 Lipid II flippase MurJ ACRYA_0876 PF01475 Ferric uptake regulator family ACRYA_0877 PF02130 Uncharacterized protein family UPF0054 ACRYA_0879 PF18073 Rubredoxin metal binding domain ACRYA_0880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACRYA_0880 PF01367 5'-3' exonuclease, C-terminal SAM fold ACRYA_0880 PF00476 DNA polymerase family A ACRYA_0881 PF01699 Sodium/calcium exchanger protein ACRYA_0883 PF01593 Flavin containing amine oxidoreductase ACRYA_0884 PF06580 Histidine kinase ACRYA_0884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_0884 PF13492 GAF domain ACRYA_0884 PF07694 5TMR of 5TMR-LYT ACRYA_0885 PF04397 LytTr DNA-binding domain ACRYA_0885 PF00072 Response regulator receiver domain ACRYA_0886 PF12792 CSS motif domain associated with EAL ACRYA_0886 PF00563 EAL domain ACRYA_0888 PF03109 ABC1 family ACRYA_0891 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ACRYA_0892 PF00762 Ferrochelatase ACRYA_0893 PF08212 Lipocalin-like domain ACRYA_0895 PF08338 Domain of unknown function (DUF1731) ACRYA_0895 PF01370 NAD dependent epimerase/dehydratase family ACRYA_0896 PF00875 DNA photolyase ACRYA_0896 PF03441 FAD binding domain of DNA photolyase ACRYA_0897 PF04851 Type III restriction enzyme, res subunit ACRYA_0897 PF08463 EcoEI R protein C-terminal ACRYA_0897 PF00271 Helicase conserved C-terminal domain ACRYA_0897 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ACRYA_0902 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACRYA_0903 PF17760 UvrA interaction domain ACRYA_0903 PF00005 ABC transporter ACRYA_0903 PF17755 UvrA DNA-binding domain ACRYA_0904 PF08495 FIST N domain ACRYA_0904 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_0904 PF10442 FIST C domain ACRYA_0904 PF00563 EAL domain ACRYA_0907 PF00561 alpha/beta hydrolase fold ACRYA_0910 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ACRYA_0911 PF02540 NAD synthase ACRYA_0911 PF00958 GMP synthase C terminal domain ACRYA_0911 PF00117 Glutamine amidotransferase class-I ACRYA_0912 PF00890 FAD binding domain ACRYA_0912 PF02910 Fumarate reductase flavoprotein C-term ACRYA_0914 PF01863 Protein of unknown function DUF45 ACRYA_0915 PF00155 Aminotransferase class I and II ACRYA_0916 PF00072 Response regulator receiver domain ACRYA_0916 PF01966 HD domain ACRYA_0917 PF00211 Adenylate and Guanylate cyclase catalytic domain ACRYA_0922 PF00999 Sodium/hydrogen exchanger family ACRYA_0922 PF02254 TrkA-N domain ACRYA_0924 PF02600 Disulfide bond formation protein DsbB ACRYA_0927 PF08534 Redoxin ACRYA_0929 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACRYA_0930 PF01479 S4 domain ACRYA_0930 PF00849 RNA pseudouridylate synthase ACRYA_0931 PF13419 Haloacid dehalogenase-like hydrolase ACRYA_0935 PF07715 TonB-dependent Receptor Plug Domain ACRYA_0935 PF00593 TonB dependent receptor ACRYA_0936 PF01497 Periplasmic binding protein ACRYA_0937 PF00005 ABC transporter ACRYA_0938 PF01032 FecCD transport family ACRYA_0942 PF01761 3-dehydroquinate synthase ACRYA_0944 PF00919 Uncharacterized protein family UPF0004 ACRYA_0944 PF04055 Radical SAM superfamily ACRYA_0945 PF17862 AAA+ lid domain ACRYA_0945 PF06480 FtsH Extracellular ACRYA_0945 PF01434 Peptidase family M41 ACRYA_0945 PF00004 ATPase family associated with various cellular activities (AAA) ACRYA_0947 PF00994 Probable molybdopterin binding domain ACRYA_0948 PF02687 FtsX-like permease family ACRYA_0948 PF12704 MacB-like periplasmic core domain ACRYA_0949 PF00271 Helicase conserved C-terminal domain ACRYA_0949 PF02810 SEC-C motif ACRYA_0949 PF07517 SecA DEAD-like domain ACRYA_0949 PF01043 SecA preprotein cross-linking domain ACRYA_0949 PF07516 SecA Wing and Scaffold domain ACRYA_0950 PF03548 Outer membrane lipoprotein carrier protein LolA ACRYA_0952 PF07730 Histidine kinase ACRYA_0952 PF17200 Single Cache domain 2 ACRYA_0953 PF01546 Peptidase family M20/M25/M40 ACRYA_0953 PF07687 Peptidase dimerisation domain ACRYA_0954 PF01578 Cytochrome C assembly protein ACRYA_0954 PF05140 ResB-like family ACRYA_0955 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_0956 PF08003 Protein of unknown function (DUF1698) ACRYA_0957 PF00360 Phytochrome region ACRYA_0957 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_0957 PF01590 GAF domain ACRYA_0957 PF00563 EAL domain ACRYA_0959 PF00753 Metallo-beta-lactamase superfamily ACRYA_0964 PF00226 DnaJ domain ACRYA_0964 PF01556 DnaJ C terminal domain ACRYA_0964 PF00684 DnaJ central domain ACRYA_0965 PF18644 Phage integrase SAM-like domain ACRYA_0965 PF00589 Phage integrase family ACRYA_0966 PF00072 Response regulator receiver domain ACRYA_0966 PF01339 CheB methylesterase ACRYA_0967 PF03975 CheD chemotactic sensory transduction ACRYA_0968 PF01739 CheR methyltransferase, SAM binding domain ACRYA_0968 PF03705 CheR methyltransferase, all-alpha domain ACRYA_0969 PF01584 CheW-like domain ACRYA_0969 PF09078 CheY binding ACRYA_0969 PF02895 Signal transducing histidine kinase, homodimeric domain ACRYA_0969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_0969 PF01627 Hpt domain ACRYA_0970 PF00072 Response regulator receiver domain ACRYA_0971 PF00013 KH domain ACRYA_0971 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACRYA_0971 PF01138 3' exoribonuclease family, domain 1 ACRYA_0971 PF03725 3' exoribonuclease family, domain 2 ACRYA_0971 PF00575 S1 RNA binding domain ACRYA_0973 PF04453 LPS transport system D ACRYA_0973 PF03968 OstA-like protein ACRYA_0975 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACRYA_0975 PF02844 Phosphoribosylglycinamide synthetase, N domain ACRYA_0975 PF02843 Phosphoribosylglycinamide synthetase, C domain ACRYA_0977 PF01740 STAS domain ACRYA_0977 PF00916 Sulfate permease family ACRYA_0978 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACRYA_0978 PF01926 50S ribosome-binding GTPase ACRYA_0979 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ACRYA_0979 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACRYA_0981 PF17854 FtsK alpha domain ACRYA_0981 PF09397 Ftsk gamma domain ACRYA_0981 PF01580 FtsK/SpoIIIE family ACRYA_0982 PF00132 Bacterial transferase hexapeptide (six repeats) ACRYA_0982 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACRYA_0983 PF10369 Small subunit of acetolactate synthase ACRYA_0984 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACRYA_0984 PF00205 Thiamine pyrophosphate enzyme, central domain ACRYA_0984 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACRYA_0986 PF02541 Ppx/GppA phosphatase family ACRYA_0987 PF01066 CDP-alcohol phosphatidyltransferase ACRYA_0991 PF01171 PP-loop family ACRYA_0993 PF03453 MoeA N-terminal region (domain I and II) ACRYA_0993 PF03454 MoeA C-terminal region (domain IV) ACRYA_0993 PF00994 Probable molybdopterin binding domain ACRYA_0995 PF04228 Putative neutral zinc metallopeptidase ACRYA_0996 PF02646 RmuC family ACRYA_0997 PF16491 CAAX prenyl protease N-terminal, five membrane helices ACRYA_0997 PF01435 Peptidase family M48 ACRYA_0998 PF13396 Phospholipase_D-nuclease N-terminal ACRYA_0998 PF13091 PLD-like domain ACRYA_0999 PF03061 Thioesterase superfamily ACRYA_1000 PF00360 Phytochrome region ACRYA_1000 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1000 PF01590 GAF domain ACRYA_1000 PF00563 EAL domain ACRYA_1003 PF01432 Peptidase family M3 ACRYA_1004 PF05175 Methyltransferase small domain ACRYA_1004 PF17827 PrmC N-terminal domain ACRYA_1005 PF06969 HemN C-terminal domain ACRYA_1005 PF04055 Radical SAM superfamily ACRYA_1006 PF00293 NUDIX domain ACRYA_1007 PF13840 ACT domain ACRYA_1007 PF01842 ACT domain ACRYA_1007 PF00696 Amino acid kinase family ACRYA_1010 PF00809 Pterin binding enzyme ACRYA_1014 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACRYA_1014 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACRYA_1015 PF06969 HemN C-terminal domain ACRYA_1015 PF04055 Radical SAM superfamily ACRYA_1017 PF03594 Benzoate membrane transport protein ACRYA_1019 PF00202 Aminotransferase class-III ACRYA_1020 PF03473 MOSC domain ACRYA_1021 PF01113 Dihydrodipicolinate reductase, N-terminus ACRYA_1021 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ACRYA_1022 PF00005 ABC transporter ACRYA_1024 PF00571 CBS domain ACRYA_1024 PF03471 Transporter associated domain ACRYA_1024 PF01595 Cyclin M transmembrane N-terminal domain ACRYA_1025 PF01713 Smr domain ACRYA_1025 PF00488 MutS domain V ACRYA_1027 PF02618 YceG-like family ACRYA_1028 PF03971 Monomeric isocitrate dehydrogenase ACRYA_1029 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACRYA_1029 PF00056 lactate/malate dehydrogenase, NAD binding domain ACRYA_1035 PF01795 MraW methylase family ACRYA_1037 PF00216 Bacterial DNA-binding protein ACRYA_1040 PF01266 FAD dependent oxidoreductase ACRYA_1040 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ACRYA_1041 PF00072 Response regulator receiver domain ACRYA_1043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1043 PF08447 PAS fold ACRYA_1043 PF08448 PAS fold ACRYA_1044 PF01556 DnaJ C terminal domain ACRYA_1044 PF00226 DnaJ domain ACRYA_1045 PF13411 MerR HTH family regulatory protein ACRYA_1046 PF03741 Integral membrane protein TerC family ACRYA_1047 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACRYA_1048 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYA_1049 PF02540 NAD synthase ACRYA_1052 PF05099 Tellurite resistance protein TerB ACRYA_1052 PF00226 DnaJ domain ACRYA_1054 PF02547 Queuosine biosynthesis protein ACRYA_1055 PF00902 Sec-independent protein translocase protein (TatC) ACRYA_1056 PF02416 mttA/Hcf106 family ACRYA_1057 PF00248 Aldo/keto reductase family ACRYA_1061 PF02132 RecR protein ACRYA_1061 PF13662 Toprim domain ACRYA_1062 PF00005 ABC transporter ACRYA_1062 PF16326 ABC transporter C-terminal domain ACRYA_1062 PF12848 ABC transporter ACRYA_1064 PF04225 Opacity-associated protein A LysM-like domain ACRYA_1064 PF01551 Peptidase family M23 ACRYA_1066 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1067 PF01361 Tautomerase enzyme ACRYA_1068 PF00218 Indole-3-glycerol phosphate synthase ACRYA_1070 PF03692 Putative zinc- or iron-chelating domain ACRYA_1071 PF05175 Methyltransferase small domain ACRYA_1073 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ACRYA_1073 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACRYA_1073 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ACRYA_1074 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACRYA_1076 PF00929 Exonuclease ACRYA_1076 PF02811 PHP domain ACRYA_1076 PF14579 Helix-hairpin-helix motif ACRYA_1076 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYA_1076 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYA_1076 PF11490 DNA polymerase III polC-type N-terminus II ACRYA_1076 PF14480 DNA polymerase III polC-type N-terminus I ACRYA_1077 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACRYA_1078 PF00834 Ribulose-phosphate 3 epimerase family ACRYA_1079 PF02253 Phospholipase A1 ACRYA_1081 PF03841 L-seryl-tRNA selenium transferase ACRYA_1082 PF00009 Elongation factor Tu GTP binding domain ACRYA_1082 PF03144 Elongation factor Tu domain 2 ACRYA_1082 PF09105 Elongation factor SelB, winged helix ACRYA_1082 PF09106 Elongation factor SelB, winged helix ACRYA_1082 PF09107 Elongation factor SelB, winged helix ACRYA_1083 PF01568 Molydopterin dinucleotide binding domain ACRYA_1083 PF18364 Molybdopterin oxidoreductase N-terminal domain ACRYA_1083 PF00384 Molybdopterin oxidoreductase ACRYA_1086 PF02153 Prephenate dehydrogenase ACRYA_1087 PF07244 Surface antigen variable number repeat ACRYA_1087 PF01103 Surface antigen ACRYA_1088 PF04055 Radical SAM superfamily ACRYA_1089 PF05193 Peptidase M16 inactive domain ACRYA_1090 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACRYA_1095 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ACRYA_1097 PF01588 Putative tRNA binding domain ACRYA_1097 PF09334 tRNA synthetases class I (M) ACRYA_1097 PF00133 tRNA synthetases class I (I, L, M and V) ACRYA_1100 PF01293 Phosphoenolpyruvate carboxykinase ACRYA_1101 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACRYA_1101 PF00925 GTP cyclohydrolase II ACRYA_1107 PF04461 Protein of unknown function (DUF520) ACRYA_1108 PF04241 Protein of unknown function (DUF423) ACRYA_1109 PF00156 Phosphoribosyl transferase domain ACRYA_1110 PF00330 Aconitase family (aconitate hydratase) ACRYA_1110 PF06434 Aconitate hydratase 2 N-terminus ACRYA_1110 PF11791 Aconitate B N-terminal domain ACRYA_1112 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYA_1114 PF00072 Response regulator receiver domain ACRYA_1114 PF00486 Transcriptional regulatory protein, C terminal ACRYA_1115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1116 PF00893 Small Multidrug Resistance protein ACRYA_1118 PF01161 Phosphatidylethanolamine-binding protein ACRYA_1123 PF01790 Prolipoprotein diacylglyceryl transferase ACRYA_1124 PF09411 Lipid A 3-O-deacylase (PagL) ACRYA_1126 PF00072 Response regulator receiver domain ACRYA_1126 PF01339 CheB methylesterase ACRYA_1128 PF02348 Cytidylyltransferase ACRYA_1129 PF00005 ABC transporter ACRYA_1129 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACRYA_1130 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACRYA_1131 PF02885 Glycosyl transferase family, helical bundle domain ACRYA_1131 PF00591 Glycosyl transferase family, a/b domain ACRYA_1133 PF00106 short chain dehydrogenase ACRYA_1135 PF00933 Glycosyl hydrolase family 3 N terminal domain ACRYA_1137 PF00226 DnaJ domain ACRYA_1137 PF01556 DnaJ C terminal domain ACRYA_1137 PF00684 DnaJ central domain ACRYA_1139 PF02203 Tar ligand binding domain homologue ACRYA_1139 PF00672 HAMP domain ACRYA_1139 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_1140 PF03061 Thioesterase superfamily ACRYA_1141 PF12848 ABC transporter ACRYA_1141 PF00005 ABC transporter ACRYA_1143 PF00881 Nitroreductase family ACRYA_1144 PF02525 Flavodoxin-like fold ACRYA_1148 PF00448 SRP54-type protein, GTPase domain ACRYA_1150 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACRYA_1151 PF01966 HD domain ACRYA_1151 PF00013 KH domain ACRYA_1151 PF12072 Domain of unknown function (DUF3552) ACRYA_1153 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_1153 PF12911 N-terminal TM domain of oligopeptide transport permease C ACRYA_1154 PF00764 Arginosuccinate synthase ACRYA_1155 PF01475 Ferric uptake regulator family ACRYA_1157 PF07664 Ferrous iron transport protein B C terminus ACRYA_1157 PF02421 Ferrous iron transport protein B ACRYA_1157 PF07670 Nucleoside recognition ACRYA_1159 PF04377 Arginine-tRNA-protein transferase, C terminus ACRYA_1159 PF04376 Arginine-tRNA-protein transferase, N terminus ACRYA_1160 PF00290 Tryptophan synthase alpha chain ACRYA_1161 PF02548 Ketopantoate hydroxymethyltransferase ACRYA_1162 PF17864 RuvB AAA lid domain ACRYA_1162 PF05491 RuvB C-terminal winged helix domain ACRYA_1162 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACRYA_1163 PF01594 AI-2E family transporter ACRYA_1168 PF00571 CBS domain ACRYA_1168 PF03471 Transporter associated domain ACRYA_1171 PF00464 Serine hydroxymethyltransferase ACRYA_1172 PF02805 Metal binding domain of Ada ACRYA_1172 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACRYA_1172 PF12833 Helix-turn-helix domain ACRYA_1172 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACRYA_1173 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ACRYA_1173 PF18381 YcaO cyclodehydratase C-terminal domain ACRYA_1174 PF14602 Hexapeptide repeat of succinyl-transferase ACRYA_1174 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ACRYA_1175 PF18074 Primosomal protein N C-terminal domain ACRYA_1175 PF17764 3′ DNA-binding domain (3′BD) ACRYA_1175 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACRYA_1175 PF00270 DEAD/DEAH box helicase ACRYA_1175 PF00271 Helicase conserved C-terminal domain ACRYA_1180 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACRYA_1180 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ACRYA_1182 PF01522 Polysaccharide deacetylase ACRYA_1183 PF05661 Protein of unknown function (DUF808) ACRYA_1185 PF12823 Domain of unknown function (DUF3817) ACRYA_1188 PF00005 ABC transporter ACRYA_1189 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_1190 PF12849 PBP superfamily domain ACRYA_1191 PF00994 Probable molybdopterin binding domain ACRYA_1191 PF03454 MoeA C-terminal region (domain IV) ACRYA_1191 PF03453 MoeA N-terminal region (domain I and II) ACRYA_1195 PF02634 FdhD/NarQ family ACRYA_1197 PF13247 4Fe-4S dicluster domain ACRYA_1203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1203 PF00512 His Kinase A (phospho-acceptor) domain ACRYA_1204 PF00072 Response regulator receiver domain ACRYA_1204 PF00158 Sigma-54 interaction domain ACRYA_1207 PF01841 Transglutaminase-like superfamily ACRYA_1208 PF00586 AIR synthase related protein, N-terminal domain ACRYA_1208 PF02769 AIR synthase related protein, C-terminal domain ACRYA_1209 PF00580 UvrD/REP helicase N-terminal domain ACRYA_1209 PF13361 UvrD-like helicase C-terminal domain ACRYA_1210 PF02254 TrkA-N domain ACRYA_1210 PF00999 Sodium/hydrogen exchanger family ACRYA_1210 PF02080 TrkA-C domain ACRYA_1211 PF00174 Oxidoreductase molybdopterin binding domain ACRYA_1223 PF00753 Metallo-beta-lactamase superfamily ACRYA_1223 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACRYA_1227 PF06865 Pyrimidine/purine nucleoside phosphorylase ACRYA_1228 PF00202 Aminotransferase class-III ACRYA_1230 PF01098 Cell cycle protein ACRYA_1231 PF01479 S4 domain ACRYA_1231 PF00849 RNA pseudouridylate synthase ACRYA_1233 PF02390 Putative methyltransferase ACRYA_1234 PF00005 ABC transporter ACRYA_1238 PF03717 Penicillin-binding Protein dimerisation domain ACRYA_1238 PF00905 Penicillin binding protein transpeptidase domain ACRYA_1239 PF00813 FliP family ACRYA_1240 PF11849 Domain of unknown function (DUF3369) ACRYA_1242 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACRYA_1243 PF00873 AcrB/AcrD/AcrF family ACRYA_1244 PF00873 AcrB/AcrD/AcrF family ACRYA_1245 PF00578 AhpC/TSA family ACRYA_1246 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1246 PF08447 PAS fold ACRYA_1246 PF08448 PAS fold ACRYA_1247 PF00486 Transcriptional regulatory protein, C terminal ACRYA_1247 PF00072 Response regulator receiver domain ACRYA_1250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACRYA_1250 PF00529 HlyD membrane-fusion protein of T1SS ACRYA_1251 PF00873 AcrB/AcrD/AcrF family ACRYA_1252 PF08459 UvrC Helix-hairpin-helix N-terminal ACRYA_1252 PF02151 UvrB/uvrC motif ACRYA_1252 PF01541 GIY-YIG catalytic domain ACRYA_1253 PF00842 Alanine racemase, C-terminal domain ACRYA_1253 PF01168 Alanine racemase, N-terminal domain ACRYA_1254 PF00465 Iron-containing alcohol dehydrogenase ACRYA_1255 PF07690 Major Facilitator Superfamily ACRYA_1256 PF12833 Helix-turn-helix domain ACRYA_1256 PF06719 AraC-type transcriptional regulator N-terminus ACRYA_1257 PF00155 Aminotransferase class I and II ACRYA_1258 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1258 PF17158 Membrane-associated sensor, integral membrane domain ACRYA_1261 PF05191 Adenylate kinase, active site lid ACRYA_1264 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACRYA_1264 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACRYA_1267 PF02554 Carbon starvation protein CstA ACRYA_1267 PF13722 5TM C-terminal transporter carbon starvation CstA ACRYA_1270 PF07715 TonB-dependent Receptor Plug Domain ACRYA_1270 PF00593 TonB dependent receptor ACRYA_1271 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACRYA_1271 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACRYA_1272 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACRYA_1273 PF07963 Prokaryotic N-terminal methylation motif ACRYA_1273 PF08334 Type II secretion system (T2SS), protein G ACRYA_1274 PF00772 DnaB-like helicase N terminal domain ACRYA_1274 PF03796 DnaB-like helicase C terminal domain ACRYA_1275 PF04551 GcpE protein ACRYA_1278 PF00152 tRNA synthetases class II (D, K and N) ACRYA_1278 PF01336 OB-fold nucleic acid binding domain ACRYA_1279 PF00464 Serine hydroxymethyltransferase ACRYA_1281 PF00425 chorismate binding enzyme ACRYA_1281 PF04715 Anthranilate synthase component I, N terminal region ACRYA_1282 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ACRYA_1283 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ACRYA_1285 PF17158 Membrane-associated sensor, integral membrane domain ACRYA_1285 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1287 PF00300 Histidine phosphatase superfamily (branch 1) ACRYA_1289 PF01926 50S ribosome-binding GTPase ACRYA_1289 PF12631 MnmE helical domain ACRYA_1289 PF10396 GTP-binding protein TrmE N-terminus ACRYA_1291 PF02096 60Kd inner membrane protein ACRYA_1291 PF14849 YidC periplasmic domain ACRYA_1292 PF01809 Putative membrane protein insertion efficiency factor ACRYA_1293 PF00825 Ribonuclease P ACRYA_1294 PF00468 Ribosomal protein L34 ACRYA_1295 PF17871 AAA lid domain ACRYA_1295 PF07724 AAA domain (Cdc48 subfamily) ACRYA_1295 PF10431 C-terminal, D2-small domain, of ClpB protein ACRYA_1295 PF02861 Clp amino terminal domain, pathogenicity island component ACRYA_1295 PF00004 ATPase family associated with various cellular activities (AAA) ACRYA_1296 PF01351 Ribonuclease HII ACRYA_1309 PF04829 Pre-toxin domain with VENN motif ACRYA_1309 PF05594 Haemagluttinin repeat ACRYA_1309 PF13332 Hemagglutinin repeat ACRYA_1309 PF05860 haemagglutination activity domain ACRYA_1309 PF15526 Novel toxin 21 ACRYA_1309 PF04829 Pre-toxin domain with VENN motif ACRYA_1309 PF05594 Haemagluttinin repeat ACRYA_1309 PF13332 Hemagglutinin repeat ACRYA_1309 PF05860 haemagglutination activity domain ACRYA_1309 PF15526 Novel toxin 21 ACRYA_1310 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ACRYA_1310 PF17287 POTRA domain ACRYA_1310 PF08479 POTRA domain, ShlB-type ACRYA_1311 PF00005 ABC transporter ACRYA_1311 PF02687 FtsX-like permease family ACRYA_1311 PF12704 MacB-like periplasmic core domain ACRYA_1312 PF00005 ABC transporter ACRYA_1312 PF02687 FtsX-like permease family ACRYA_1312 PF12704 MacB-like periplasmic core domain ACRYA_1315 PF01618 MotA/TolQ/ExbB proton channel family ACRYA_1316 PF02472 Biopolymer transport protein ExbD/TolR ACRYA_1318 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1319 PF00768 D-alanyl-D-alanine carboxypeptidase ACRYA_1319 PF07943 Penicillin-binding protein 5, C-terminal domain ACRYA_1320 PF00118 TCP-1/cpn60 chaperonin family ACRYA_1321 PF00166 Chaperonin 10 Kd subunit ACRYA_1322 PF00348 Polyprenyl synthetase ACRYA_1323 PF02575 YbaB/EbfC DNA-binding family ACRYA_1324 PF02261 Aspartate decarboxylase ACRYA_1325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACRYA_1326 PF01584 CheW-like domain ACRYA_1327 PF02601 Exonuclease VII, large subunit ACRYA_1327 PF13742 OB-fold nucleic acid binding domain ACRYA_1328 PF01209 ubiE/COQ5 methyltransferase family ACRYA_1331 PF13277 YmdB-like protein ACRYA_1332 PF00989 PAS fold ACRYA_1332 PF13426 PAS domain ACRYA_1332 PF13188 PAS domain ACRYA_1332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1332 PF00512 His Kinase A (phospho-acceptor) domain ACRYA_1333 PF13426 PAS domain ACRYA_1333 PF07536 HWE histidine kinase ACRYA_1333 PF13581 Histidine kinase-like ATPase domain ACRYA_1334 PF00072 Response regulator receiver domain ACRYA_1334 PF00486 Transcriptional regulatory protein, C terminal ACRYA_1335 PF00672 HAMP domain ACRYA_1335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_1335 PF02203 Tar ligand binding domain homologue ACRYA_1338 PF00486 Transcriptional regulatory protein, C terminal ACRYA_1338 PF00072 Response regulator receiver domain ACRYA_1340 PF00563 EAL domain ACRYA_1340 PF01590 GAF domain ACRYA_1340 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1340 PF00360 Phytochrome region ACRYA_1342 PF00072 Response regulator receiver domain ACRYA_1343 PF08447 PAS fold ACRYA_1343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1343 PF08448 PAS fold ACRYA_1344 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ACRYA_1345 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ACRYA_1346 PF03480 Bacterial extracellular solute-binding protein, family 7 ACRYA_1347 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_1348 PF00005 ABC transporter ACRYA_1351 PF00137 ATP synthase subunit C ACRYA_1356 PF04116 Fatty acid hydroxylase superfamily ACRYA_1357 PF03150 Di-haem cytochrome c peroxidase ACRYA_1358 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACRYA_1359 PF03793 PASTA domain ACRYA_1359 PF00905 Penicillin binding protein transpeptidase domain ACRYA_1359 PF03717 Penicillin-binding Protein dimerisation domain ACRYA_1360 PF01098 Cell cycle protein ACRYA_1361 PF04101 Glycosyltransferase family 28 C-terminal domain ACRYA_1361 PF03033 Glycosyltransferase family 28 N-terminal domain ACRYA_1362 PF02673 Bacitracin resistance protein BacA ACRYA_1363 PF02621 Menaquinone biosynthesis ACRYA_1365 PF02391 MoaE protein ACRYA_1367 PF03951 Glutamine synthetase, beta-Grasp domain ACRYA_1367 PF00120 Glutamine synthetase, catalytic domain ACRYA_1368 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACRYA_1369 PF01029 NusB family ACRYA_1370 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACRYA_1381 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ ACRYA_1394 PF13533 Biotin-lipoyl like ACRYA_1395 PF00072 Response regulator receiver domain ACRYA_1395 PF00196 Bacterial regulatory proteins, luxR family ACRYA_1398 PF00664 ABC transporter transmembrane region ACRYA_1398 PF03412 Peptidase C39 family ACRYA_1398 PF00005 ABC transporter ACRYA_1402 PF03372 Endonuclease/Exonuclease/phosphatase family ACRYA_1403 PF02568 Thiamine biosynthesis protein (ThiI) ACRYA_1403 PF02926 THUMP domain ACRYA_1410 PF00665 Integrase core domain ACRYA_1413 PF02899 Phage integrase, N-terminal SAM-like domain ACRYA_1413 PF00589 Phage integrase family ACRYA_1414 PF12161 HsdM N-terminal domain ACRYA_1414 PF02384 N-6 DNA Methylase ACRYA_1416 PF04231 Endonuclease I ACRYA_1421 PF02203 Tar ligand binding domain homologue ACRYA_1421 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_1421 PF00672 HAMP domain ACRYA_1422 PF08447 PAS fold ACRYA_1422 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_1424 PF01327 Polypeptide deformylase ACRYA_1425 PF00574 Clp protease ACRYA_1426 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACRYA_1426 PF05697 Bacterial trigger factor protein (TF) ACRYA_1426 PF05698 Bacterial trigger factor protein (TF) C-terminus ACRYA_1427 PF03976 Polyphosphate kinase 2 (PPK2) ACRYA_1428 PF03976 Polyphosphate kinase 2 (PPK2) ACRYA_1429 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACRYA_1430 PF03435 Saccharopine dehydrogenase NADP binding domain ACRYA_1430 PF16653 Saccharopine dehydrogenase C-terminal domain ACRYA_1432 PF02698 DUF218 domain ACRYA_1433 PF01875 Memo-like protein ACRYA_1436 PF00034 Cytochrome c ACRYA_1437 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACRYA_1439 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYA_1440 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYA_1441 PF00639 PPIC-type PPIASE domain ACRYA_1443 PF13186 Iron-sulfur cluster-binding domain ACRYA_1443 PF04055 Radical SAM superfamily ACRYA_1445 PF10414 Sirohaem synthase dimerisation region ACRYA_1445 PF14824 Sirohaem biosynthesis protein central ACRYA_1445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACRYA_1447 PF14824 Sirohaem biosynthesis protein central ACRYA_1447 PF10414 Sirohaem synthase dimerisation region ACRYA_1447 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACRYA_1448 PF17805 AsnC-like ligand binding domain ACRYA_1451 PF00762 Ferrochelatase ACRYA_1452 PF00005 ABC transporter ACRYA_1453 PF00313 'Cold-shock' DNA-binding domain ACRYA_1456 PF00403 Heavy-metal-associated domain ACRYA_1457 PF00563 EAL domain ACRYA_1457 PF08448 PAS fold ACRYA_1457 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1458 PF00625 Guanylate kinase ACRYA_1460 PF00005 ABC transporter ACRYA_1461 PF00889 Elongation factor TS ACRYA_1462 PF00318 Ribosomal protein S2 ACRYA_1463 PF08245 Mur ligase middle domain ACRYA_1463 PF02875 Mur ligase family, glutamate ligase domain ACRYA_1466 PF00133 tRNA synthetases class I (I, L, M and V) ACRYA_1466 PF08264 Anticodon-binding domain of tRNA ACRYA_1467 PF06039 Malate:quinone oxidoreductase (Mqo) ACRYA_1468 PF02464 Competence-damaged protein ACRYA_1468 PF18146 Damage-inducible protein CinA KH domain ACRYA_1468 PF00994 Probable molybdopterin binding domain ACRYA_1477 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1477 PF00512 His Kinase A (phospho-acceptor) domain ACRYA_1478 PF00486 Transcriptional regulatory protein, C terminal ACRYA_1478 PF00072 Response regulator receiver domain ACRYA_1480 PF00474 Sodium:solute symporter family ACRYA_1482 PF14579 Helix-hairpin-helix motif ACRYA_1482 PF00929 Exonuclease ACRYA_1482 PF02811 PHP domain ACRYA_1482 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYA_1482 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYA_1482 PF11490 DNA polymerase III polC-type N-terminus II ACRYA_1484 PF00474 Sodium:solute symporter family ACRYA_1486 PF00474 Sodium:solute symporter family ACRYA_1488 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYA_1488 PF02811 PHP domain ACRYA_1488 PF00929 Exonuclease ACRYA_1488 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYA_1488 PF14579 Helix-hairpin-helix motif ACRYA_1490 PF00871 Acetokinase family ACRYA_1491 PF01515 Phosphate acetyl/butaryl transferase ACRYA_1492 PF00871 Acetokinase family ACRYA_1493 PF01343 Peptidase family S49 ACRYA_1494 PF01979 Amidohydrolase family ACRYA_1495 PF01220 Dehydroquinase class II ACRYA_1496 PF01321 Creatinase/Prolidase N-terminal domain ACRYA_1496 PF00557 Metallopeptidase family M24 ACRYA_1497 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACRYA_1501 PF14572 Phosphoribosyl synthetase-associated domain ACRYA_1501 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACRYA_1502 PF05736 OprF membrane domain ACRYA_1502 PF00691 OmpA family ACRYA_1503 PF06421 GTP-binding protein LepA C-terminus ACRYA_1503 PF00679 Elongation factor G C-terminus ACRYA_1503 PF03144 Elongation factor Tu domain 2 ACRYA_1503 PF00009 Elongation factor Tu GTP binding domain ACRYA_1505 PF00117 Glutamine amidotransferase class-I ACRYA_1506 PF00977 Histidine biosynthesis protein ACRYA_1507 PF07694 5TMR of 5TMR-LYT ACRYA_1507 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1509 PF01914 MarC family integral membrane protein ACRYA_1510 PF01624 MutS domain I ACRYA_1510 PF05192 MutS domain III ACRYA_1510 PF05190 MutS family domain IV ACRYA_1510 PF00488 MutS domain V ACRYA_1510 PF05188 MutS domain II ACRYA_1513 PF00682 HMGL-like ACRYA_1513 PF08502 LeuA allosteric (dimerisation) domain ACRYA_1515 PF00004 ATPase family associated with various cellular activities (AAA) ACRYA_1515 PF17862 AAA+ lid domain ACRYA_1515 PF01434 Peptidase family M41 ACRYA_1517 PF01207 Dihydrouridine synthase (Dus) ACRYA_1519 PF02590 Predicted SPOUT methyltransferase ACRYA_1520 PF02581 Thiamine monophosphate synthase ACRYA_1521 PF17848 Acetyl-coA carboxylase zinc finger domain ACRYA_1521 PF01039 Carboxyl transferase domain ACRYA_1522 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACRYA_1522 PF02772 S-adenosylmethionine synthetase, central domain ACRYA_1522 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACRYA_1525 PF01380 SIS domain ACRYA_1526 PF00459 Inositol monophosphatase family ACRYA_1528 PF00672 HAMP domain ACRYA_1528 PF02203 Tar ligand binding domain homologue ACRYA_1528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_1536 PF00883 Cytosol aminopeptidase family, catalytic domain ACRYA_1536 PF02789 Cytosol aminopeptidase family, N-terminal domain ACRYA_1538 PF00291 Pyridoxal-phosphate dependent enzyme ACRYA_1539 PF00156 Phosphoribosyl transferase domain ACRYA_1540 PF01068 ATP dependent DNA ligase domain ACRYA_1540 PF14743 DNA ligase OB-like domain ACRYA_1542 PF01053 Cys/Met metabolism PLP-dependent enzyme ACRYA_1543 PF01053 Cys/Met metabolism PLP-dependent enzyme ACRYA_1544 PF00583 Acetyltransferase (GNAT) family ACRYA_1548 PF06965 Na+/H+ antiporter 1 ACRYA_1556 PF00696 Amino acid kinase family ACRYA_1557 PF01192 RNA polymerase Rpb6 ACRYA_1558 PF02824 TGS domain ACRYA_1558 PF04607 Region found in RelA / SpoT proteins ACRYA_1558 PF13291 ACT domain ACRYA_1559 PF01479 S4 domain ACRYA_1559 PF00579 tRNA synthetases class I (W and Y) ACRYA_1561 PF01520 N-acetylmuramoyl-L-alanine amidase ACRYA_1564 PF01195 Peptidyl-tRNA hydrolase ACRYA_1565 PF01386 Ribosomal L25p family ACRYA_1565 PF14693 Ribosomal protein TL5, C-terminal domain ACRYA_1566 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACRYA_1566 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACRYA_1567 PF10502 Signal peptidase, peptidase S26 ACRYA_1568 PF02502 Ribose/Galactose Isomerase ACRYA_1576 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1576 PF10442 FIST C domain ACRYA_1576 PF00563 EAL domain ACRYA_1576 PF08495 FIST N domain ACRYA_1577 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACRYA_1577 PF01243 Pyridoxamine 5'-phosphate oxidase ACRYA_1578 PF01545 Cation efflux family ACRYA_1578 PF16916 Dimerisation domain of Zinc Transporter ACRYA_1579 PF03707 Bacterial signalling protein N terminal repeat ACRYA_1579 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1579 PF00563 EAL domain ACRYA_1580 PF00271 Helicase conserved C-terminal domain ACRYA_1580 PF00270 DEAD/DEAH box helicase ACRYA_1580 PF03880 DbpA RNA binding domain ACRYA_1584 PF00183 Hsp90 protein ACRYA_1586 PF00491 Arginase family ACRYA_1588 PF08713 DNA alkylation repair enzyme ACRYA_1589 PF04073 Aminoacyl-tRNA editing domain ACRYA_1595 PF04403 Paraquat-inducible protein A ACRYA_1596 PF02470 MlaD protein ACRYA_1597 PF00199 Catalase ACRYA_1597 PF06628 Catalase-related immune-responsive ACRYA_1598 PF00023 Ankyrin repeat ACRYA_1598 PF12796 Ankyrin repeats (3 copies) ACRYA_1600 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACRYA_1600 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACRYA_1601 PF00924 Mechanosensitive ion channel ACRYA_1602 PF01368 DHH family ACRYA_1602 PF02833 DHHA2 domain ACRYA_1603 PF02810 SEC-C motif ACRYA_1605 PF10415 Fumarase C C-terminus ACRYA_1605 PF00206 Lyase ACRYA_1606 PF01048 Phosphorylase superfamily ACRYA_1607 PF00698 Acyl transferase domain ACRYA_1608 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACRYA_1611 PF04052 TolB amino-terminal domain ACRYA_1613 PF02472 Biopolymer transport protein ExbD/TolR ACRYA_1614 PF01618 MotA/TolQ/ExbB proton channel family ACRYA_1615 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACRYA_1616 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYA_1616 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACRYA_1617 PF00231 ATP synthase ACRYA_1618 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACRYA_1618 PF00306 ATP synthase alpha/beta chain, C terminal domain ACRYA_1618 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYA_1619 PF00213 ATP synthase delta (OSCP) subunit ACRYA_1620 PF00430 ATP synthase B/B' CF(0) ACRYA_1622 PF17762 HTH domain found in ParB protein ACRYA_1622 PF02195 ParB-like nuclease domain ACRYA_1623 PF13614 AAA domain ACRYA_1626 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_1626 PF08447 PAS fold ACRYA_1627 PF00551 Formyl transferase ACRYA_1627 PF02911 Formyl transferase, C-terminal domain ACRYA_1628 PF00696 Amino acid kinase family ACRYA_1629 PF01926 50S ribosome-binding GTPase ACRYA_1629 PF01018 GTP1/OBG ACRYA_1630 PF01016 Ribosomal L27 protein ACRYA_1631 PF00829 Ribosomal prokaryotic L21 protein ACRYA_1632 PF16730 DnaG-primase C-terminal, helicase-binding domain ACRYA_1632 PF08275 DNA primase catalytic core, N-terminal domain ACRYA_1632 PF01807 CHC2 zinc finger ACRYA_1632 PF13662 Toprim domain ACRYA_1634 PF00035 Double-stranded RNA binding motif ACRYA_1634 PF14622 Ribonuclease-III-like ACRYA_1635 PF01264 Chorismate synthase ACRYA_1637 PF03976 Polyphosphate kinase 2 (PPK2) ACRYA_1640 PF01625 Peptide methionine sulfoxide reductase ACRYA_1642 PF00202 Aminotransferase class-III ACRYA_1643 PF08448 PAS fold ACRYA_1643 PF08447 PAS fold ACRYA_1643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1644 PF01808 AICARFT/IMPCHase bienzyme ACRYA_1644 PF02142 MGS-like domain ACRYA_1645 PF00586 AIR synthase related protein, N-terminal domain ACRYA_1645 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACRYA_1645 PF02769 AIR synthase related protein, C-terminal domain ACRYA_1647 PF01551 Peptidase family M23 ACRYA_1647 PF10145 Phage-related minor tail protein ACRYA_1647 PF01464 Transglycosylase SLT domain ACRYA_1648 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACRYA_1648 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACRYA_1651 PF17674 HHH domain ACRYA_1651 PF00575 S1 RNA binding domain ACRYA_1651 PF09371 Tex-like protein N-terminal domain ACRYA_1651 PF16921 Tex protein YqgF-like domain ACRYA_1652 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ACRYA_1653 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACRYA_1654 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACRYA_1655 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACRYA_1655 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACRYA_1657 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACRYA_1657 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACRYA_1657 PF10531 SLBB domain ACRYA_1658 PF00285 Citrate synthase, C-terminal domain ACRYA_1659 PF00384 Molybdopterin oxidoreductase ACRYA_1659 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACRYA_1659 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ACRYA_1660 PF00146 NADH dehydrogenase ACRYA_1661 PF12838 4Fe-4S dicluster domain ACRYA_1662 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACRYA_1663 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACRYA_1664 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACRYA_1664 PF00361 Proton-conducting membrane transporter ACRYA_1665 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACRYA_1665 PF00361 Proton-conducting membrane transporter ACRYA_1666 PF00361 Proton-conducting membrane transporter ACRYA_1667 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACRYA_1668 PF00890 FAD binding domain ACRYA_1668 PF02910 Fumarate reductase flavoprotein C-term ACRYA_1669 PF13085 2Fe-2S iron-sulfur cluster binding domain ACRYA_1669 PF13183 4Fe-4S dicluster domain ACRYA_1670 PF00350 Dynamin family ACRYA_1671 PF00350 Dynamin family ACRYA_1673 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACRYA_1673 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACRYA_1674 PF02504 Fatty acid synthesis protein ACRYA_1675 PF01783 Ribosomal L32p protein family ACRYA_1677 PF00334 Nucleoside diphosphate kinase ACRYA_1679 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACRYA_1679 PF00578 AhpC/TSA family ACRYA_1680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACRYA_1680 PF07498 Rho termination factor, N-terminal domain ACRYA_1680 PF07497 Rho termination factor, RNA-binding domain ACRYA_1681 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACRYA_1681 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACRYA_1682 PF01177 Asp/Glu/Hydantoin racemase ACRYA_1683 PF12169 DNA polymerase III subunits gamma and tau domain III ACRYA_1683 PF12170 DNA polymerase III tau subunit V interacting with alpha ACRYA_1685 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACRYA_1685 PF03900 Porphobilinogen deaminase, C-terminal domain ACRYA_1691 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACRYA_1691 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ACRYA_1694 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACRYA_1695 PF01668 SmpB protein ACRYA_1696 PF00288 GHMP kinases N terminal domain ACRYA_1697 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACRYA_1698 PF13361 UvrD-like helicase C-terminal domain ACRYA_1698 PF00580 UvrD/REP helicase N-terminal domain ACRYA_1699 PF03466 LysR substrate binding domain ACRYA_1699 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACRYA_1700 PF04055 Radical SAM superfamily ACRYA_1700 PF16199 Radical_SAM C-terminal domain ACRYA_1701 PF13537 Glutamine amidotransferase domain ACRYA_1701 PF00156 Phosphoribosyl transferase domain ACRYA_1702 PF05173 Dihydrodipicolinate reductase, C-terminus ACRYA_1702 PF01113 Dihydrodipicolinate reductase, N-terminus ACRYA_1703 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYA_1704 PF00085 Thioredoxin ACRYA_1705 PF02272 DHHA1 domain ACRYA_1705 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACRYA_1705 PF01411 tRNA synthetases class II (A) ACRYA_1711 PF00486 Transcriptional regulatory protein, C terminal ACRYA_1711 PF00072 Response regulator receiver domain ACRYA_1712 PF13180 PDZ domain ACRYA_1712 PF17820 PDZ domain ACRYA_1713 PF00920 Dehydratase family ACRYA_1719 PF00005 ABC transporter ACRYA_1719 PF09383 NIL domain ACRYA_1723 PF01142 tRNA pseudouridine synthase D (TruD) ACRYA_1726 PF13180 PDZ domain ACRYA_1726 PF03572 Peptidase family S41 ACRYA_1727 PF01259 SAICAR synthetase ACRYA_1728 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ACRYA_1731 PF01553 Acyltransferase ACRYA_1732 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACRYA_1733 PF02416 mttA/Hcf106 family ACRYA_1734 PF02416 mttA/Hcf106 family ACRYA_1735 PF03485 Arginyl tRNA synthetase N terminal domain ACRYA_1735 PF05746 DALR anticodon binding domain ACRYA_1735 PF00750 tRNA synthetases class I (R) ACRYA_1737 PF01467 Cytidylyltransferase-like ACRYA_1738 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACRYA_1738 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACRYA_1739 PF00162 Phosphoglycerate kinase ACRYA_1740 PF00121 Triosephosphate isomerase ACRYA_1742 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACRYA_1742 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACRYA_1743 PF00800 Prephenate dehydratase ACRYA_1743 PF01817 Chorismate mutase type II ACRYA_1743 PF01842 ACT domain ACRYA_1744 PF00155 Aminotransferase class I and II ACRYA_1745 PF02780 Transketolase, C-terminal domain ACRYA_1745 PF02779 Transketolase, pyrimidine binding domain ACRYA_1745 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACRYA_1746 PF03150 Di-haem cytochrome c peroxidase ACRYA_1746 PF00034 Cytochrome c ACRYA_1748 PF02545 Maf-like protein ACRYA_1750 PF00877 NlpC/P60 family ACRYA_1752 PF00939 Sodium:sulfate symporter transmembrane region ACRYA_1754 PF00085 Thioredoxin ACRYA_1754 PF02683 Cytochrome C biogenesis protein transmembrane region ACRYA_1754 PF11412 Disulphide bond corrector protein DsbC ACRYA_1755 PF00085 Thioredoxin ACRYA_1756 PF08443 RimK-like ATP-grasp domain ACRYA_1756 PF18030 RimK PreATP-grasp domain ACRYA_1759 PF00563 EAL domain ACRYA_1759 PF08495 FIST N domain ACRYA_1759 PF10442 FIST C domain ACRYA_1759 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_1760 PF02666 Phosphatidylserine decarboxylase ACRYA_1762 PF04055 Radical SAM superfamily ACRYA_1764 PF00484 Carbonic anhydrase ACRYA_1765 PF00155 Aminotransferase class I and II ACRYA_1766 PF02021 Uncharacterised protein family UPF0102 ACRYA_1768 PF00224 Pyruvate kinase, barrel domain ACRYA_1768 PF02887 Pyruvate kinase, alpha/beta domain ACRYA_1768 PF00391 PEP-utilising enzyme, mobile domain ACRYA_1770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1770 PF00512 His Kinase A (phospho-acceptor) domain ACRYA_1771 PF00486 Transcriptional regulatory protein, C terminal ACRYA_1771 PF00072 Response regulator receiver domain ACRYA_1774 PF07195 Flagellar hook-associated protein 2 C-terminus ACRYA_1774 PF07196 Flagellin hook IN motif ACRYA_1774 PF02465 Flagellar hook-associated protein 2 N-terminus ACRYA_1776 PF02107 Flagellar L-ring protein ACRYA_1781 PF01313 Bacterial export proteins, family 3 ACRYA_1783 PF02119 Flagellar P-ring protein ACRYA_1784 PF02154 Flagellar motor switch protein FliM ACRYA_1784 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACRYA_1786 PF00543 Nitrogen regulatory protein P-II ACRYA_1787 PF00909 Ammonium Transporter Family ACRYA_1788 PF12796 Ankyrin repeats (3 copies) ACRYA_1788 PF13606 Ankyrin repeat ACRYA_1789 PF08335 GlnD PII-uridylyltransferase ACRYA_1789 PF01966 HD domain ACRYA_1791 PF02040 Arsenical pump membrane protein ACRYA_1795 PF02417 Chromate transporter ACRYA_1796 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACRYA_1798 PF02779 Transketolase, pyrimidine binding domain ACRYA_1798 PF02780 Transketolase, C-terminal domain ACRYA_1798 PF00456 Transketolase, thiamine diphosphate binding domain ACRYA_1800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1800 PF08448 PAS fold ACRYA_1800 PF08447 PAS fold ACRYA_1801 PF02203 Tar ligand binding domain homologue ACRYA_1801 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_1801 PF00672 HAMP domain ACRYA_1802 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACRYA_1805 PF00682 HMGL-like ACRYA_1805 PF02436 Conserved carboxylase domain ACRYA_1811 PF05690 Thiazole biosynthesis protein ThiG ACRYA_1813 PF01256 Carbohydrate kinase ACRYA_1813 PF03853 YjeF-related protein N-terminus ACRYA_1815 PF00814 Glycoprotease family ACRYA_1818 PF13288 DXP reductoisomerase C-terminal domain ACRYA_1818 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACRYA_1818 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACRYA_1824 PF03129 Anticodon binding domain ACRYA_1824 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACRYA_1824 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACRYA_1825 PF05198 Translation initiation factor IF-3, N-terminal domain ACRYA_1825 PF00707 Translation initiation factor IF-3, C-terminal domain ACRYA_1826 PF01632 Ribosomal protein L35 ACRYA_1827 PF00453 Ribosomal protein L20 ACRYA_1829 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACRYA_1830 PF12804 MobA-like NTP transferase domain ACRYA_1831 PF00330 Aconitase family (aconitate hydratase) ACRYA_1833 PF04303 PrpF protein ACRYA_1834 PF00330 Aconitase family (aconitate hydratase) ACRYA_1834 PF00694 Aconitase C-terminal domain ACRYA_1835 PF00285 Citrate synthase, C-terminal domain ACRYA_1838 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACRYA_1838 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACRYA_1839 PF01474 Class-II DAHP synthetase family ACRYA_1840 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACRYA_1843 PF03652 Holliday junction resolvase ACRYA_1844 PF03616 Sodium/glutamate symporter ACRYA_1848 PF01648 4'-phosphopantetheinyl transferase superfamily ACRYA_1849 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_1850 PF02569 Pantoate-beta-alanine ligase ACRYA_1852 PF00919 Uncharacterized protein family UPF0004 ACRYA_1852 PF18693 TRAM domain ACRYA_1852 PF04055 Radical SAM superfamily ACRYA_1853 PF01171 PP-loop family ACRYA_1856 PF03734 L,D-transpeptidase catalytic domain ACRYA_1856 PF17969 L,D-transpeptidase C-terminal domain ACRYA_1858 PF08274 PhnA Zinc-Ribbon ACRYA_1858 PF03831 PhnA domain ACRYA_1859 PF12849 PBP superfamily domain ACRYA_1860 PF12792 CSS motif domain associated with EAL ACRYA_1860 PF00563 EAL domain ACRYA_1861 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_1862 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_1863 PF00005 ABC transporter ACRYA_1866 PF00486 Transcriptional regulatory protein, C terminal ACRYA_1866 PF00072 Response regulator receiver domain ACRYA_1867 PF00512 His Kinase A (phospho-acceptor) domain ACRYA_1867 PF00989 PAS fold ACRYA_1867 PF16736 Single Cache-like ACRYA_1867 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1868 PF00572 Ribosomal protein L13 ACRYA_1869 PF00380 Ribosomal protein S9/S16 ACRYA_1870 PF03070 TENA/THI-4/PQQC family ACRYA_1871 PF02110 Hydroxyethylthiazole kinase family ACRYA_1872 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACRYA_1873 PF13419 Haloacid dehalogenase-like hydrolase ACRYA_1877 PF00005 ABC transporter ACRYA_1877 PF09383 NIL domain ACRYA_1878 PF02405 Permease MlaE ACRYA_1881 PF02664 S-Ribosylhomocysteinase (LuxS) ACRYA_1883 PF00768 D-alanyl-D-alanine carboxypeptidase ACRYA_1883 PF07943 Penicillin-binding protein 5, C-terminal domain ACRYA_1885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1885 PF00512 His Kinase A (phospho-acceptor) domain ACRYA_1885 PF00989 PAS fold ACRYA_1885 PF13188 PAS domain ACRYA_1885 PF13426 PAS domain ACRYA_1886 PF00809 Pterin binding enzyme ACRYA_1886 PF02574 Homocysteine S-methyltransferase ACRYA_1886 PF02965 Vitamin B12 dependent methionine synthase, activation domain ACRYA_1886 PF02607 B12 binding domain ACRYA_1886 PF02310 B12 binding domain ACRYA_1888 PF01063 Amino-transferase class IV ACRYA_1891 PF01502 Phosphoribosyl-AMP cyclohydrolase ACRYA_1891 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ACRYA_1894 PF00583 Acetyltransferase (GNAT) family ACRYA_1895 PF00202 Aminotransferase class-III ACRYA_1896 PF06339 Ectoine synthase ACRYA_1897 PF10609 NUBPL iron-transfer P-loop NTPase ACRYA_1897 PF01883 Iron-sulfur cluster assembly protein ACRYA_1898 PF01964 Radical SAM ThiC family ACRYA_1900 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACRYA_1900 PF02542 YgbB family ACRYA_1902 PF04608 Phosphatidylglycerophosphatase A ACRYA_1903 PF03462 PCRF domain ACRYA_1903 PF00472 RF-1 domain ACRYA_1904 PF01649 Ribosomal protein S20 ACRYA_1905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACRYA_1905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACRYA_1905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACRYA_1905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACRYA_1906 PF01252 Signal peptidase (SPase) II ACRYA_1907 PF00202 Aminotransferase class-III ACRYA_1909 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACRYA_1909 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACRYA_1911 PF01063 Amino-transferase class IV ACRYA_1912 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACRYA_1912 PF00117 Glutamine amidotransferase class-I ACRYA_1914 PF00709 Adenylosuccinate synthetase ACRYA_1915 PF13393 Histidyl-tRNA synthetase ACRYA_1916 PF00266 Aminotransferase class-V ACRYA_1918 PF01047 MarR family ACRYA_1921 PF02678 Pirin ACRYA_1921 PF17954 Quercetinase C-terminal cupin domain ACRYA_1922 PF09962 Uncharacterized conserved protein (DUF2196) ACRYA_1923 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACRYA_1923 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACRYA_1924 PF00586 AIR synthase related protein, N-terminal domain ACRYA_1924 PF02769 AIR synthase related protein, C-terminal domain ACRYA_1925 PF17284 Spermidine synthase tetramerisation domain ACRYA_1926 PF01121 Dephospho-CoA kinase ACRYA_1928 PF13746 4Fe-4S dicluster domain ACRYA_1928 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ACRYA_1928 PF12801 4Fe-4S binding domain ACRYA_1929 PF00117 Glutamine amidotransferase class-I ACRYA_1929 PF06418 CTP synthase N-terminus ACRYA_1930 PF01368 DHH family ACRYA_1930 PF02272 DHHA1 domain ACRYA_1930 PF17768 RecJ OB domain ACRYA_1930 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ACRYA_1934 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACRYA_1934 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACRYA_1934 PF14579 Helix-hairpin-helix motif ACRYA_1934 PF02811 PHP domain ACRYA_1935 PF01975 Survival protein SurE ACRYA_1938 PF01967 MoaC family ACRYA_1939 PF01165 Ribosomal protein S21 ACRYA_1940 PF02535 ZIP Zinc transporter ACRYA_1952 PF13356 Arm DNA-binding domain ACRYA_1952 PF00589 Phage integrase family ACRYA_1954 PF01040 UbiA prenyltransferase family ACRYA_1957 PF01197 Ribosomal protein L31 ACRYA_1958 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACRYA_1959 PF00588 SpoU rRNA Methylase family ACRYA_1959 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACRYA_1961 PF00155 Aminotransferase class I and II ACRYA_1962 PF01842 ACT domain ACRYA_1962 PF00742 Homoserine dehydrogenase ACRYA_1962 PF03447 Homoserine dehydrogenase, NAD binding domain ACRYA_1963 PF00849 RNA pseudouridylate synthase ACRYA_1964 PF10397 Adenylosuccinate lyase C-terminus ACRYA_1964 PF00206 Lyase ACRYA_1965 PF00317 Ribonucleotide reductase, all-alpha domain ACRYA_1965 PF02867 Ribonucleotide reductase, barrel domain ACRYA_1965 PF03477 ATP cone domain ACRYA_1966 PF00268 Ribonucleotide reductase, small chain ACRYA_1967 PF00691 OmpA family ACRYA_1967 PF05736 OprF membrane domain ACRYA_1969 PF00593 TonB dependent receptor ACRYA_1969 PF07715 TonB-dependent Receptor Plug Domain ACRYA_1971 PF08447 PAS fold ACRYA_1971 PF08448 PAS fold ACRYA_1971 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_1972 PF00072 Response regulator receiver domain ACRYA_1972 PF00486 Transcriptional regulatory protein, C terminal ACRYA_1976 PF00107 Zinc-binding dehydrogenase ACRYA_1976 PF08240 Alcohol dehydrogenase GroES-like domain ACRYA_1977 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACRYA_1977 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACRYA_1978 PF02934 GatB/GatE catalytic domain ACRYA_1978 PF02637 GatB domain ACRYA_1980 PF01872 RibD C-terminal domain ACRYA_1980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACRYA_1981 PF00364 Biotin-requiring enzyme ACRYA_1982 PF02785 Biotin carboxylase C-terminal domain ACRYA_1982 PF00289 Biotin carboxylase, N-terminal domain ACRYA_1982 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACRYA_1983 PF00270 DEAD/DEAH box helicase ACRYA_1983 PF00271 Helicase conserved C-terminal domain ACRYA_1984 PF01384 Phosphate transporter family ACRYA_1986 PF13537 Glutamine amidotransferase domain ACRYA_1986 PF00733 Asparagine synthase ACRYA_1988 PF02562 PhoH-like protein ACRYA_1988 PF13638 PIN domain ACRYA_1989 PF03653 Uncharacterised protein family (UPF0093) ACRYA_1990 PF16193 AAA C-terminal domain ACRYA_1990 PF01661 Macro domain ACRYA_1990 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACRYA_1990 PF12002 MgsA AAA+ ATPase C terminal ACRYA_1991 PF01479 S4 domain ACRYA_1991 PF00849 RNA pseudouridylate synthase ACRYA_1992 PF01380 SIS domain ACRYA_1992 PF00571 CBS domain ACRYA_1993 PF00753 Metallo-beta-lactamase superfamily ACRYA_1993 PF17770 Ribonuclease J C-terminal domain ACRYA_1993 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACRYA_1994 PF00398 Ribosomal RNA adenine dimethylase ACRYA_1995 PF00977 Histidine biosynthesis protein ACRYA_1998 PF04055 Radical SAM superfamily ACRYA_1999 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACRYA_2000 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ACRYA_2001 PF00072 Response regulator receiver domain ACRYA_2001 PF00486 Transcriptional regulatory protein, C terminal ACRYA_2002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_2006 PF00873 AcrB/AcrD/AcrF family ACRYA_2007 PF04264 YceI-like domain ACRYA_2008 PF00291 Pyridoxal-phosphate dependent enzyme ACRYA_2011 PF00149 Calcineurin-like phosphoesterase ACRYA_2012 PF00011 Hsp20/alpha crystallin family ACRYA_2014 PF12857 TOBE-like domain ACRYA_2014 PF17850 CysA C-terminal regulatory domain ACRYA_2014 PF00005 ABC transporter ACRYA_2015 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_2016 PF00528 Binding-protein-dependent transport system inner membrane component ACRYA_2017 PF00672 HAMP domain ACRYA_2017 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACRYA_2017 PF02203 Tar ligand binding domain homologue ACRYA_2018 PF00563 EAL domain ACRYA_2018 PF08495 FIST N domain ACRYA_2018 PF10442 FIST C domain ACRYA_2018 PF00990 Diguanylate cyclase, GGDEF domain ACRYA_2019 PF00899 ThiF family ACRYA_2019 PF00581 Rhodanese-like domain ACRYA_2023 PF00009 Elongation factor Tu GTP binding domain ACRYA_2023 PF00679 Elongation factor G C-terminus ACRYA_2023 PF03144 Elongation factor Tu domain 2 ACRYA_2024 PF04143 Sulphur transport ACRYA_2025 PF01206 Sulfurtransferase TusA ACRYA_2026 PF08019 Phosphoethanolamine transferase EptA/EptB ACRYA_2026 PF00884 Sulfatase ACRYA_2028 PF01219 Prokaryotic diacylglycerol kinase ACRYA_2034 PF00072 Response regulator receiver domain ACRYA_2034 PF00486 Transcriptional regulatory protein, C terminal ACRYA_2036 PF11849 Domain of unknown function (DUF3369) ACRYA_2037 PF02511 Thymidylate synthase complementing protein ACRYA_2038 PF03458 UPF0126 domain ACRYA_2040 PF00551 Formyl transferase ACRYA_2040 PF01842 ACT domain ACRYA_2041 PF02075 Crossover junction endodeoxyribonuclease RuvC ACRYA_a0001 PF12320 Type 5 capsule protein repressor C-terminal domain ACRYA_a0001 PF00149 Calcineurin-like phosphoesterase ACRYA_a0002 PF13476 AAA domain ACRYA_a0006 PF01026 TatD related DNase ACRYA_a0008 PF13195 Protein of unknown function (DUF4011) ACRYA_a0008 PF13086 AAA domain ACRYA_a0008 PF13087 AAA domain ACRYA_a0010 PF01966 HD domain ACRYA_a0013 PF12282 Signal transduction histidine kinase ACRYA_a0013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_a0013 PF07568 Histidine kinase ACRYA_a0019 PF01527 Transposase ACRYA_a0020 PF00665 Integrase core domain ACRYA_a0020 PF13333 Integrase core domain ACRYA_a0020 PF13276 HTH-like domain ACRYA_a0021 PF01022 Bacterial regulatory protein, arsR family ACRYA_a0022 PF00072 Response regulator receiver domain ACRYA_a0022 PF00486 Transcriptional regulatory protein, C terminal ACRYA_a0023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACRYA_a0027 PF02796 Helix-turn-helix domain of resolvase ACRYA_a0027 PF00239 Resolvase, N terminal domain ACRYA_a0029 PF02810 SEC-C motif ACRYA_a0029 PF07517 SecA DEAD-like domain ACRYA_a0029 PF07516 SecA Wing and Scaffold domain ACRYA_a0029 PF01043 SecA preprotein cross-linking domain ACRYA_a0030 PF10463 Peptidase U49 ACRYA_a0034 PF00722 Glycosyl hydrolases family 16 ACRYA_a0046 PF18644 Phage integrase SAM-like domain ACRYA_a0046 PF00589 Phage integrase family ACRYA_a0047 PF00589 Phage integrase family ACRYA_a0047 PF02899 Phage integrase, N-terminal SAM-like domain ACRYA_a0049 PF01820 D-ala D-ala ligase N-terminus ACRYA_a0049 PF07478 D-ala D-ala ligase C-terminus ACRYA_a0070 PF01820 D-ala D-ala ligase N-terminus ACRYA_a0070 PF07478 D-ala D-ala ligase C-terminus ACRYA_a0072 PF00589 Phage integrase family ACRYA_a0072 PF02899 Phage integrase, N-terminal SAM-like domain ACRYA_a0075 PF00437 Type II/IV secretion system protein ACRYA_a0076 PF00263 Bacterial type II and III secretion system protein ACRYA_a0076 PF03958 Bacterial type II/III secretion system short domain ACRYA_a0082 PF00482 Type II secretion system (T2SS), protein F ACRYA_a0084 PF07963 Prokaryotic N-terminal methylation motif ACRYA_a0084 PF08334 Type II secretion system (T2SS), protein G ACRYA_a0092 PF16226 Domain of unknown function (DUF4885) ACRYA_a0096 PF00772 DnaB-like helicase N terminal domain ACRYA_a0096 PF03796 DnaB-like helicase C terminal domain ACRYA_a0098 PF02195 ParB-like nuclease domain ACRYA_a0099 PF13614 AAA domain