locus-tag class description ALANTH_0001 PF00308 Bacterial dnaA protein ALANTH_0001 PF08299 Bacterial dnaA protein helix-turn-helix ALANTH_0001 PF11638 DnaA N-terminal domain ALANTH_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ALANTH_0002 PF02767 DNA polymerase III beta subunit, central domain ALANTH_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ALANTH_0003 PF00204 DNA gyrase B ALANTH_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ALANTH_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0003 PF01751 Toprim domain ALANTH_0005 PF14489 QueF-like protein ALANTH_0010 PF13649 Methyltransferase domain ALANTH_0011 PF00005 ABC transporter ALANTH_0012 PF01032 FecCD transport family ALANTH_0014 PF00296 Luciferase-like monooxygenase ALANTH_0015 PF07715 TonB-dependent Receptor Plug Domain ALANTH_0015 PF07660 Secretin and TonB N terminus short domain ALANTH_0015 PF00593 TonB dependent receptor ALANTH_0016 PF00005 ABC transporter ALANTH_0016 PF08402 TOBE domain ALANTH_0017 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_0020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALANTH_0020 PF03459 TOBE domain ALANTH_0022 PF03466 LysR substrate binding domain ALANTH_0022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALANTH_0025 PF00849 RNA pseudouridylate synthase ALANTH_0026 PF00206 Lyase ALANTH_0026 PF10397 Adenylosuccinate lyase C-terminus ALANTH_0027 PF03477 ATP cone domain ALANTH_0027 PF02867 Ribonucleotide reductase, barrel domain ALANTH_0027 PF00317 Ribonucleotide reductase, all-alpha domain ALANTH_0028 PF00268 Ribonucleotide reductase, small chain ALANTH_0029 PF00691 OmpA family ALANTH_0029 PF05736 OprF membrane domain ALANTH_0031 PF08240 Alcohol dehydrogenase GroES-like domain ALANTH_0031 PF00107 Zinc-binding dehydrogenase ALANTH_0032 PF01638 HxlR-like helix-turn-helix ALANTH_0033 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALANTH_0033 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ALANTH_0034 PF02637 GatB domain ALANTH_0034 PF02934 GatB/GatE catalytic domain ALANTH_0036 PF02913 FAD linked oxidases, C-terminal domain ALANTH_0036 PF01565 FAD binding domain ALANTH_0037 PF02652 L-lactate permease ALANTH_0038 PF00486 Transcriptional regulatory protein, C terminal ALANTH_0038 PF00072 Response regulator receiver domain ALANTH_0039 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_0039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0039 PF00989 PAS fold ALANTH_0040 PF02589 LUD domain ALANTH_0041 PF02589 LUD domain ALANTH_0041 PF13183 4Fe-4S dicluster domain ALANTH_0041 PF11870 Domain of unknown function (DUF3390) ALANTH_0042 PF02754 Cysteine-rich domain ALANTH_0043 PF01872 RibD C-terminal domain ALANTH_0043 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALANTH_0044 PF00364 Biotin-requiring enzyme ALANTH_0045 PF00289 Biotin carboxylase, N-terminal domain ALANTH_0045 PF02785 Biotin carboxylase C-terminal domain ALANTH_0045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALANTH_0046 PF00271 Helicase conserved C-terminal domain ALANTH_0046 PF00270 DEAD/DEAH box helicase ALANTH_0047 PF01384 Phosphate transporter family ALANTH_0049 PF13537 Glutamine amidotransferase domain ALANTH_0049 PF00733 Asparagine synthase ALANTH_0051 PF13638 PIN domain ALANTH_0051 PF02562 PhoH-like protein ALANTH_0052 PF03653 Uncharacterised protein family (UPF0093) ALANTH_0053 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALANTH_0053 PF12002 MgsA AAA+ ATPase C terminal ALANTH_0053 PF01661 Macro domain ALANTH_0053 PF16193 AAA C-terminal domain ALANTH_0054 PF01479 S4 domain ALANTH_0054 PF00849 RNA pseudouridylate synthase ALANTH_0055 PF01380 SIS domain ALANTH_0055 PF00571 CBS domain ALANTH_0056 PF17770 Ribonuclease J C-terminal domain ALANTH_0056 PF00753 Metallo-beta-lactamase superfamily ALANTH_0056 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ALANTH_0057 PF00398 Ribosomal RNA adenine dimethylase ALANTH_0058 PF00977 Histidine biosynthesis protein ALANTH_0061 PF04055 Radical SAM superfamily ALANTH_0062 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALANTH_0063 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ALANTH_0064 PF00072 Response regulator receiver domain ALANTH_0064 PF00486 Transcriptional regulatory protein, C terminal ALANTH_0065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0071 PF00873 AcrB/AcrD/AcrF family ALANTH_0072 PF04264 YceI-like domain ALANTH_0073 PF13411 MerR HTH family regulatory protein ALANTH_0074 PF00857 Isochorismatase family ALANTH_0075 PF01842 ACT domain ALANTH_0075 PF03447 Homoserine dehydrogenase, NAD binding domain ALANTH_0075 PF00742 Homoserine dehydrogenase ALANTH_0076 PF00155 Aminotransferase class I and II ALANTH_0078 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALANTH_0078 PF00588 SpoU rRNA Methylase family ALANTH_0079 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALANTH_0080 PF01197 Ribosomal protein L31 ALANTH_0083 PF01040 UbiA prenyltransferase family ALANTH_0085 PF13356 Arm DNA-binding domain ALANTH_0085 PF00589 Phage integrase family ALANTH_0095 PF02899 Phage integrase, N-terminal SAM-like domain ALANTH_0095 PF00589 Phage integrase family ALANTH_0097 PF02796 Helix-turn-helix domain of resolvase ALANTH_0097 PF00239 Resolvase, N terminal domain ALANTH_0099 PF00145 C-5 cytosine-specific DNA methylase ALANTH_0100 PF00145 C-5 cytosine-specific DNA methylase ALANTH_0101 PF01051 Initiator Replication protein ALANTH_0106 PF01165 Ribosomal protein S21 ALANTH_0107 PF01967 MoaC family ALANTH_0110 PF01975 Survival protein SurE ALANTH_0111 PF02811 PHP domain ALANTH_0111 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALANTH_0111 PF14579 Helix-hairpin-helix motif ALANTH_0111 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALANTH_0115 PF01368 DHH family ALANTH_0115 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ALANTH_0115 PF02272 DHHA1 domain ALANTH_0115 PF17768 RecJ OB domain ALANTH_0116 PF00117 Glutamine amidotransferase class-I ALANTH_0116 PF06418 CTP synthase N-terminus ALANTH_0117 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALANTH_0117 PF13746 4Fe-4S dicluster domain ALANTH_0117 PF12801 4Fe-4S binding domain ALANTH_0119 PF01121 Dephospho-CoA kinase ALANTH_0120 PF02769 AIR synthase related protein, C-terminal domain ALANTH_0120 PF00586 AIR synthase related protein, N-terminal domain ALANTH_0121 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_0121 PF00989 PAS fold ALANTH_0121 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0122 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_0122 PF09456 RcsC Alpha-Beta-Loop (ABL) ALANTH_0122 PF00072 Response regulator receiver domain ALANTH_0123 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALANTH_0125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALANTH_0125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALANTH_0126 PF02678 Pirin ALANTH_0126 PF17954 Quercetinase C-terminal cupin domain ALANTH_0128 PF04264 YceI-like domain ALANTH_0130 PF04264 YceI-like domain ALANTH_0132 PF00266 Aminotransferase class-V ALANTH_0133 PF13393 Histidyl-tRNA synthetase ALANTH_0134 PF00709 Adenylosuccinate synthetase ALANTH_0136 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ALANTH_0136 PF00117 Glutamine amidotransferase class-I ALANTH_0138 PF04608 Phosphatidylglycerophosphatase A ALANTH_0140 PF02542 YgbB family ALANTH_0140 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ALANTH_0142 PF17284 Spermidine synthase tetramerisation domain ALANTH_0143 PF01964 Radical SAM ThiC family ALANTH_0144 PF10609 NUBPL iron-transfer P-loop NTPase ALANTH_0144 PF01883 Iron-sulfur cluster assembly protein ALANTH_0146 PF01502 Phosphoribosyl-AMP cyclohydrolase ALANTH_0146 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALANTH_0149 PF01063 Amino-transferase class IV ALANTH_0151 PF02574 Homocysteine S-methyltransferase ALANTH_0151 PF00809 Pterin binding enzyme ALANTH_0151 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALANTH_0151 PF02607 B12 binding domain ALANTH_0151 PF02310 B12 binding domain ALANTH_0153 PF00768 D-alanyl-D-alanine carboxypeptidase ALANTH_0153 PF07943 Penicillin-binding protein 5, C-terminal domain ALANTH_0156 PF02664 S-Ribosylhomocysteinase (LuxS) ALANTH_0157 PF01047 MarR family ALANTH_0159 PF02405 Permease MlaE ALANTH_0160 PF00005 ABC transporter ALANTH_0160 PF09383 NIL domain ALANTH_0164 PF13419 Haloacid dehalogenase-like hydrolase ALANTH_0165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALANTH_0166 PF03070 TENA/THI-4/PQQC family ALANTH_0167 PF00380 Ribosomal protein S9/S16 ALANTH_0168 PF00572 Ribosomal protein L13 ALANTH_0169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0169 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_0170 PF00072 Response regulator receiver domain ALANTH_0170 PF00486 Transcriptional regulatory protein, C terminal ALANTH_0172 PF01895 PhoU domain ALANTH_0173 PF00005 ABC transporter ALANTH_0174 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_0175 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_0176 PF00563 EAL domain ALANTH_0176 PF12792 CSS motif domain associated with EAL ALANTH_0177 PF12849 PBP superfamily domain ALANTH_0182 PF03462 PCRF domain ALANTH_0182 PF00472 RF-1 domain ALANTH_0183 PF01649 Ribosomal protein S20 ALANTH_0184 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALANTH_0184 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALANTH_0184 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALANTH_0184 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALANTH_0185 PF01252 Signal peptidase (SPase) II ALANTH_0186 PF00330 Aconitase family (aconitate hydratase) ALANTH_0187 PF12804 MobA-like NTP transferase domain ALANTH_0188 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALANTH_0190 PF00453 Ribosomal protein L20 ALANTH_0191 PF01632 Ribosomal protein L35 ALANTH_0192 PF00707 Translation initiation factor IF-3, C-terminal domain ALANTH_0192 PF05198 Translation initiation factor IF-3, N-terminal domain ALANTH_0193 PF03129 Anticodon binding domain ALANTH_0193 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALANTH_0193 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALANTH_0199 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ALANTH_0199 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ALANTH_0199 PF13288 DXP reductoisomerase C-terminal domain ALANTH_0202 PF00814 Glycoprotease family ALANTH_0204 PF03853 YjeF-related protein N-terminus ALANTH_0204 PF01256 Carbohydrate kinase ALANTH_0205 PF03091 CutA1 divalent ion tolerance protein ALANTH_0206 PF05690 Thiazole biosynthesis protein ThiG ALANTH_0213 PF08502 LeuA allosteric (dimerisation) domain ALANTH_0213 PF00682 HMGL-like ALANTH_0216 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALANTH_0217 PF00672 HAMP domain ALANTH_0217 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0217 PF02203 Tar ligand binding domain homologue ALANTH_0219 PF02779 Transketolase, pyrimidine binding domain ALANTH_0219 PF02780 Transketolase, C-terminal domain ALANTH_0219 PF00456 Transketolase, thiamine diphosphate binding domain ALANTH_0221 PF02040 Arsenical pump membrane protein ALANTH_0222 PF00375 Sodium:dicarboxylate symporter family ALANTH_0224 PF01066 CDP-alcohol phosphatidyltransferase ALANTH_0227 PF00501 AMP-binding enzyme ALANTH_0227 PF01553 Acyltransferase ALANTH_0230 PF01966 HD domain ALANTH_0230 PF08335 GlnD PII-uridylyltransferase ALANTH_0230 PF01842 ACT domain ALANTH_0232 PF00909 Ammonium Transporter Family ALANTH_0233 PF00543 Nitrogen regulatory protein P-II ALANTH_0235 PF02154 Flagellar motor switch protein FliM ALANTH_0235 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALANTH_0236 PF02119 Flagellar P-ring protein ALANTH_0238 PF01313 Bacterial export proteins, family 3 ALANTH_0241 PF03748 Flagellar basal body-associated protein FliL ALANTH_0243 PF02107 Flagellar L-ring protein ALANTH_0245 PF07195 Flagellar hook-associated protein 2 C-terminus ALANTH_0245 PF02465 Flagellar hook-associated protein 2 N-terminus ALANTH_0246 PF02561 Flagellar protein FliS ALANTH_0248 PF01171 PP-loop family ALANTH_0249 PF04055 Radical SAM superfamily ALANTH_0249 PF18693 TRAM domain ALANTH_0249 PF00919 Uncharacterized protein family UPF0004 ALANTH_0251 PF02569 Pantoate-beta-alanine ligase ALANTH_0252 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_0253 PF01648 4'-phosphopantetheinyl transferase superfamily ALANTH_0256 PF03616 Sodium/glutamate symporter ALANTH_0257 PF03652 Holliday junction resolvase ALANTH_0260 PF00923 Transaldolase/Fructose-6-phosphate aldolase ALANTH_0261 PF01474 Class-II DAHP synthetase family ALANTH_0262 PF03960 ArsC family ALANTH_0263 PF02686 Glu-tRNAGln amidotransferase C subunit ALANTH_0264 PF01702 Queuine tRNA-ribosyltransferase ALANTH_0267 PF01225 Mur ligase family, catalytic domain ALANTH_0267 PF02875 Mur ligase family, glutamate ligase domain ALANTH_0267 PF08245 Mur ligase middle domain ALANTH_0278 PF12161 HsdM N-terminal domain ALANTH_0278 PF02384 N-6 DNA Methylase ALANTH_0281 PF13649 Methyltransferase domain ALANTH_0282 PF02899 Phage integrase, N-terminal SAM-like domain ALANTH_0282 PF00589 Phage integrase family ALANTH_0284 PF02463 RecF/RecN/SMC N terminal domain ALANTH_0285 PF00580 UvrD/REP helicase N-terminal domain ALANTH_0285 PF13361 UvrD-like helicase C-terminal domain ALANTH_0288 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALANTH_0288 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALANTH_0289 PF00773 RNB domain ALANTH_0290 PF02623 FliW protein ALANTH_0291 PF06144 DNA polymerase III, delta subunit ALANTH_0292 PF01250 Ribosomal protein S6 ALANTH_0293 PF00436 Single-strand binding protein family ALANTH_0294 PF01084 Ribosomal protein S18 ALANTH_0296 PF09190 DALR domain ALANTH_0296 PF01406 tRNA synthetases class I (C) catalytic domain ALANTH_0297 PF08529 NusA N-terminal domain ALANTH_0297 PF13184 NusA-like KH domain ALANTH_0299 PF01938 TRAM domain ALANTH_0299 PF00919 Uncharacterized protein family UPF0004 ALANTH_0299 PF04055 Radical SAM superfamily ALANTH_0300 PF04028 Domain of unknown function (DUF374) ALANTH_0302 PF04055 Radical SAM superfamily ALANTH_0304 PF00484 Carbonic anhydrase ALANTH_0305 PF00155 Aminotransferase class I and II ALANTH_0306 PF02021 Uncharacterised protein family UPF0102 ALANTH_0307 PF05690 Thiazole biosynthesis protein ThiG ALANTH_0307 PF02597 ThiS family ALANTH_0308 PF00224 Pyruvate kinase, barrel domain ALANTH_0308 PF00391 PEP-utilising enzyme, mobile domain ALANTH_0308 PF02887 Pyruvate kinase, alpha/beta domain ALANTH_0309 PF00486 Transcriptional regulatory protein, C terminal ALANTH_0309 PF00072 Response regulator receiver domain ALANTH_0310 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_0310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0313 PF00202 Aminotransferase class-III ALANTH_0315 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALANTH_0315 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALANTH_0316 PF00425 chorismate binding enzyme ALANTH_0319 PF01063 Amino-transferase class IV ALANTH_0320 PF03831 PhnA domain ALANTH_0320 PF08274 PhnA Zinc-Ribbon ALANTH_0322 PF03734 L,D-transpeptidase catalytic domain ALANTH_0322 PF17969 L,D-transpeptidase C-terminal domain ALANTH_0326 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALANTH_0326 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALANTH_0330 PF00285 Citrate synthase, C-terminal domain ALANTH_0331 PF00330 Aconitase family (aconitate hydratase) ALANTH_0331 PF00694 Aconitase C-terminal domain ALANTH_0332 PF04303 PrpF protein ALANTH_0333 PF00857 Isochorismatase family ALANTH_0334 PF13687 Domain of unknown function (DUF4153) ALANTH_0335 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ALANTH_0335 PF03900 Porphobilinogen deaminase, C-terminal domain ALANTH_0337 PF12169 DNA polymerase III subunits gamma and tau domain III ALANTH_0337 PF12170 DNA polymerase III tau subunit V interacting with alpha ALANTH_0338 PF01177 Asp/Glu/Hydantoin racemase ALANTH_0340 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALANTH_0340 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALANTH_0341 PF07498 Rho termination factor, N-terminal domain ALANTH_0341 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALANTH_0341 PF07497 Rho termination factor, RNA-binding domain ALANTH_0342 PF00578 AhpC/TSA family ALANTH_0342 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALANTH_0344 PF00334 Nucleoside diphosphate kinase ALANTH_0346 PF01783 Ribosomal L32p protein family ALANTH_0347 PF02504 Fatty acid synthesis protein ALANTH_0348 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALANTH_0348 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALANTH_0350 PF00350 Dynamin family ALANTH_0351 PF00350 Dynamin family ALANTH_0352 PF13085 2Fe-2S iron-sulfur cluster binding domain ALANTH_0352 PF13183 4Fe-4S dicluster domain ALANTH_0353 PF00890 FAD binding domain ALANTH_0353 PF02910 Fumarate reductase flavoprotein C-term ALANTH_0354 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALANTH_0355 PF00361 Proton-conducting membrane transporter ALANTH_0356 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ALANTH_0356 PF00361 Proton-conducting membrane transporter ALANTH_0357 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALANTH_0357 PF00361 Proton-conducting membrane transporter ALANTH_0358 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALANTH_0359 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ALANTH_0360 PF12838 4Fe-4S dicluster domain ALANTH_0361 PF00146 NADH dehydrogenase ALANTH_0362 PF00384 Molybdopterin oxidoreductase ALANTH_0362 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALANTH_0362 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ALANTH_0363 PF00285 Citrate synthase, C-terminal domain ALANTH_0364 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALANTH_0364 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALANTH_0364 PF10531 SLBB domain ALANTH_0366 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ALANTH_0366 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ALANTH_0367 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALANTH_0368 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ALANTH_0369 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ALANTH_0370 PF06738 Putative threonine/serine exporter ALANTH_0370 PF12821 Threonine/Serine exporter, ThrE ALANTH_0371 PF06738 Putative threonine/serine exporter ALANTH_0373 PF03309 Type III pantothenate kinase ALANTH_0374 PF01634 ATP phosphoribosyltransferase ALANTH_0376 PF00672 HAMP domain ALANTH_0376 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0376 PF02203 Tar ligand binding domain homologue ALANTH_0377 PF06977 SdiA-regulated ALANTH_0378 PF00579 tRNA synthetases class I (W and Y) ALANTH_0380 PF00593 TonB dependent receptor ALANTH_0380 PF07715 TonB-dependent Receptor Plug Domain ALANTH_0382 PF13649 Methyltransferase domain ALANTH_0384 PF00593 TonB dependent receptor ALANTH_0384 PF07715 TonB-dependent Receptor Plug Domain ALANTH_0386 PF02659 Putative manganese efflux pump ALANTH_0387 PF07690 Major Facilitator Superfamily ALANTH_0389 PF00005 ABC transporter ALANTH_0389 PF00664 ABC transporter transmembrane region ALANTH_0390 PF00005 ABC transporter ALANTH_0390 PF00664 ABC transporter transmembrane region ALANTH_0390 PF04954 Siderophore-interacting protein ALANTH_0390 PF08021 Siderophore-interacting FAD-binding domain ALANTH_0391 PF07715 TonB-dependent Receptor Plug Domain ALANTH_0391 PF00593 TonB dependent receptor ALANTH_0393 PF00593 TonB dependent receptor ALANTH_0393 PF07715 TonB-dependent Receptor Plug Domain ALANTH_0394 PF12833 Helix-turn-helix domain ALANTH_0396 PF16916 Dimerisation domain of Zinc Transporter ALANTH_0396 PF01545 Cation efflux family ALANTH_0398 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALANTH_0398 PF02403 Seryl-tRNA synthetase N-terminal domain ALANTH_0400 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_0400 PF10442 FIST C domain ALANTH_0400 PF08495 FIST N domain ALANTH_0400 PF00563 EAL domain ALANTH_0401 PF01578 Cytochrome C assembly protein ALANTH_0401 PF05140 ResB-like family ALANTH_0402 PF02335 Cytochrome c552 ALANTH_0403 PF03264 NapC/NirT cytochrome c family, N-terminal region ALANTH_0404 PF08447 PAS fold ALANTH_0404 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0408 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ALANTH_0409 PF12801 4Fe-4S binding domain ALANTH_0409 PF12837 4Fe-4S binding domain ALANTH_0410 PF12800 4Fe-4S binding domain ALANTH_0410 PF12838 4Fe-4S dicluster domain ALANTH_0411 PF00384 Molybdopterin oxidoreductase ALANTH_0411 PF01568 Molydopterin dinucleotide binding domain ALANTH_0411 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALANTH_0411 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALANTH_0412 PF03480 Bacterial extracellular solute-binding protein, family 7 ALANTH_0413 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALANTH_0414 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALANTH_0415 PF08447 PAS fold ALANTH_0415 PF08448 PAS fold ALANTH_0415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0416 PF00072 Response regulator receiver domain ALANTH_0419 PF00591 Glycosyl transferase family, a/b domain ALANTH_0419 PF02885 Glycosyl transferase family, helical bundle domain ALANTH_0420 PF04055 Radical SAM superfamily ALANTH_0420 PF06463 Molybdenum Cofactor Synthesis C ALANTH_0421 PF00312 Ribosomal protein S15 ALANTH_0424 PF13380 CoA binding domain ALANTH_0425 PF08521 Two-component sensor kinase N-terminal ALANTH_0425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0425 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_0426 PF00072 Response regulator receiver domain ALANTH_0426 PF00486 Transcriptional regulatory protein, C terminal ALANTH_0427 PF00639 PPIC-type PPIASE domain ALANTH_0428 PF01116 Fructose-bisphosphate aldolase class-II ALANTH_0429 PF00171 Aldehyde dehydrogenase family ALANTH_0430 PF02472 Biopolymer transport protein ExbD/TolR ALANTH_0431 PF01618 MotA/TolQ/ExbB proton channel family ALANTH_0432 PF13649 Methyltransferase domain ALANTH_0435 PF01202 Shikimate kinase ALANTH_0436 PF00815 Histidinol dehydrogenase ALANTH_0438 PF00348 Polyprenyl synthetase ALANTH_0439 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ALANTH_0439 PF01488 Shikimate / quinate 5-dehydrogenase ALANTH_0439 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ALANTH_0440 PF04073 Aminoacyl-tRNA editing domain ALANTH_0440 PF03129 Anticodon binding domain ALANTH_0440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALANTH_0441 PF00924 Mechanosensitive ion channel ALANTH_0441 PF05552 Conserved TM helix ALANTH_0442 PF00571 CBS domain ALANTH_0442 PF01368 DHH family ALANTH_0442 PF02272 DHHA1 domain ALANTH_0442 PF01743 Poly A polymerase head domain ALANTH_0444 PF02699 Preprotein translocase subunit ALANTH_0445 PF02355 Protein export membrane protein ALANTH_0446 PF07549 SecD/SecF GG Motif ALANTH_0446 PF02355 Protein export membrane protein ALANTH_0449 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALANTH_0449 PF00691 OmpA family ALANTH_0450 PF01618 MotA/TolQ/ExbB proton channel family ALANTH_0452 PF00133 tRNA synthetases class I (I, L, M and V) ALANTH_0452 PF13603 Leucyl-tRNA synthetase, Domain 2 ALANTH_0452 PF09334 tRNA synthetases class I (M) ALANTH_0454 PF08245 Mur ligase middle domain ALANTH_0454 PF02875 Mur ligase family, glutamate ligase domain ALANTH_0462 PF02559 CarD-like/TRCF domain ALANTH_0462 PF03461 TRCF domain ALANTH_0462 PF00271 Helicase conserved C-terminal domain ALANTH_0462 PF00270 DEAD/DEAH box helicase ALANTH_0462 PF17757 UvrB interaction domain ALANTH_0465 PF04357 TamB, inner membrane protein subunit of TAM complex ALANTH_0468 PF00072 Response regulator receiver domain ALANTH_0468 PF00486 Transcriptional regulatory protein, C terminal ALANTH_0471 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0471 PF02743 Cache domain ALANTH_0471 PF00672 HAMP domain ALANTH_0472 PF08769 Sporulation initiation factor Spo0A C terminal ALANTH_0472 PF00072 Response regulator receiver domain ALANTH_0474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0474 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_0474 PF00989 PAS fold ALANTH_0474 PF08447 PAS fold ALANTH_0475 PF13277 YmdB-like protein ALANTH_0478 PF01209 ubiE/COQ5 methyltransferase family ALANTH_0479 PF02601 Exonuclease VII, large subunit ALANTH_0479 PF13742 OB-fold nucleic acid binding domain ALANTH_0480 PF01584 CheW-like domain ALANTH_0481 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALANTH_0482 PF02261 Aspartate decarboxylase ALANTH_0483 PF02575 YbaB/EbfC DNA-binding family ALANTH_0484 PF00348 Polyprenyl synthetase ALANTH_0485 PF00166 Chaperonin 10 Kd subunit ALANTH_0486 PF00118 TCP-1/cpn60 chaperonin family ALANTH_0488 PF00459 Inositol monophosphatase family ALANTH_0489 PF01380 SIS domain ALANTH_0490 PF00438 S-adenosylmethionine synthetase, N-terminal domain ALANTH_0490 PF02772 S-adenosylmethionine synthetase, central domain ALANTH_0490 PF02773 S-adenosylmethionine synthetase, C-terminal domain ALANTH_0491 PF01039 Carboxyl transferase domain ALANTH_0491 PF17848 Acetyl-coA carboxylase zinc finger domain ALANTH_0492 PF02581 Thiamine monophosphate synthase ALANTH_0493 PF02590 Predicted SPOUT methyltransferase ALANTH_0495 PF01207 Dihydrouridine synthase (Dus) ALANTH_0497 PF17862 AAA+ lid domain ALANTH_0497 PF00004 ATPase family associated with various cellular activities (AAA) ALANTH_0497 PF01434 Peptidase family M41 ALANTH_0498 PF08502 LeuA allosteric (dimerisation) domain ALANTH_0498 PF00682 HMGL-like ALANTH_0501 PF01624 MutS domain I ALANTH_0501 PF05188 MutS domain II ALANTH_0501 PF05192 MutS domain III ALANTH_0501 PF05190 MutS family domain IV ALANTH_0501 PF00488 MutS domain V ALANTH_0504 PF01914 MarC family integral membrane protein ALANTH_0506 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_0506 PF07694 5TMR of 5TMR-LYT ALANTH_0507 PF00977 Histidine biosynthesis protein ALANTH_0508 PF00117 Glutamine amidotransferase class-I ALANTH_0512 PF03575 Peptidase family S51 ALANTH_0513 PF00679 Elongation factor G C-terminus ALANTH_0513 PF00009 Elongation factor Tu GTP binding domain ALANTH_0513 PF03144 Elongation factor Tu domain 2 ALANTH_0513 PF06421 GTP-binding protein LepA C-terminus ALANTH_0514 PF02583 Metal-sensitive transcriptional repressor ALANTH_0515 PF00403 Heavy-metal-associated domain ALANTH_0516 PF05736 OprF membrane domain ALANTH_0516 PF00691 OmpA family ALANTH_0517 PF14572 Phosphoribosyl synthetase-associated domain ALANTH_0517 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ALANTH_0521 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ALANTH_0522 PF01321 Creatinase/Prolidase N-terminal domain ALANTH_0522 PF00557 Metallopeptidase family M24 ALANTH_0523 PF01220 Dehydroquinase class II ALANTH_0524 PF01979 Amidohydrolase family ALANTH_0525 PF01343 Peptidase family S49 ALANTH_0526 PF00871 Acetokinase family ALANTH_0527 PF01515 Phosphate acetyl/butaryl transferase ALANTH_0528 PF00871 Acetokinase family ALANTH_0530 PF14480 DNA polymerase III polC-type N-terminus I ALANTH_0530 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALANTH_0530 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALANTH_0530 PF14579 Helix-hairpin-helix motif ALANTH_0530 PF02811 PHP domain ALANTH_0530 PF00929 Exonuclease ALANTH_0530 PF11490 DNA polymerase III polC-type N-terminus II ALANTH_0532 PF00474 Sodium:solute symporter family ALANTH_0534 PF00474 Sodium:solute symporter family ALANTH_0536 PF00929 Exonuclease ALANTH_0536 PF11490 DNA polymerase III polC-type N-terminus II ALANTH_0536 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALANTH_0536 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALANTH_0536 PF02811 PHP domain ALANTH_0536 PF14579 Helix-hairpin-helix motif ALANTH_0538 PF00474 Sodium:solute symporter family ALANTH_0540 PF00072 Response regulator receiver domain ALANTH_0540 PF00486 Transcriptional regulatory protein, C terminal ALANTH_0541 PF17200 Single Cache domain 2 ALANTH_0541 PF07730 Histidine kinase ALANTH_0550 PF02464 Competence-damaged protein ALANTH_0550 PF18146 Damage-inducible protein CinA KH domain ALANTH_0550 PF00994 Probable molybdopterin binding domain ALANTH_0551 PF06039 Malate:quinone oxidoreductase (Mqo) ALANTH_0552 PF00133 tRNA synthetases class I (I, L, M and V) ALANTH_0552 PF08264 Anticodon-binding domain of tRNA ALANTH_0556 PF08245 Mur ligase middle domain ALANTH_0556 PF02875 Mur ligase family, glutamate ligase domain ALANTH_0557 PF00318 Ribosomal protein S2 ALANTH_0558 PF00889 Elongation factor TS ALANTH_0559 PF00005 ABC transporter ALANTH_0561 PF00625 Guanylate kinase ALANTH_0562 PF08448 PAS fold ALANTH_0562 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_0562 PF00563 EAL domain ALANTH_0563 PF00403 Heavy-metal-associated domain ALANTH_0566 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALANTH_0566 PF00005 ABC transporter ALANTH_0567 PF00762 Ferrochelatase ALANTH_0568 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALANTH_0568 PF14824 Sirohaem biosynthesis protein central ALANTH_0568 PF10414 Sirohaem synthase dimerisation region ALANTH_0569 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALANTH_0569 PF10414 Sirohaem synthase dimerisation region ALANTH_0569 PF14824 Sirohaem biosynthesis protein central ALANTH_0570 PF02698 DUF218 domain ALANTH_0572 PF00005 ABC transporter ALANTH_0573 PF00950 ABC 3 transport family ALANTH_0574 PF13509 S1 domain ALANTH_0574 PF17783 CvfB-like winged helix domain ALANTH_0575 PF08534 Redoxin ALANTH_0578 PF00580 UvrD/REP helicase N-terminal domain ALANTH_0578 PF13361 UvrD-like helicase C-terminal domain ALANTH_0579 PF02080 TrkA-C domain ALANTH_0579 PF02254 TrkA-N domain ALANTH_0579 PF00999 Sodium/hydrogen exchanger family ALANTH_0580 PF00174 Oxidoreductase molybdopterin binding domain ALANTH_0592 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALANTH_0592 PF00753 Metallo-beta-lactamase superfamily ALANTH_0594 PF01966 HD domain ALANTH_0595 PF12282 Signal transduction histidine kinase ALANTH_0595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0595 PF07568 Histidine kinase ALANTH_0596 PF00072 Response regulator receiver domain ALANTH_0596 PF00486 Transcriptional regulatory protein, C terminal ALANTH_0607 PF10458 Valyl tRNA synthetase tRNA binding arm ALANTH_0607 PF00133 tRNA synthetases class I (I, L, M and V) ALANTH_0607 PF08264 Anticodon-binding domain of tRNA ALANTH_0609 PF09962 Uncharacterized conserved protein (DUF2196) ALANTH_0611 PF07690 Major Facilitator Superfamily ALANTH_0612 PF01725 Ham1 family ALANTH_0616 PF03807 NADP oxidoreductase coenzyme F420-dependent ALANTH_0616 PF14748 Pyrroline-5-carboxylate reductase dimerisation ALANTH_0617 PF13525 Outer membrane lipoprotein ALANTH_0618 PF00004 ATPase family associated with various cellular activities (AAA) ALANTH_0618 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALANTH_0618 PF05362 Lon protease (S16) C-terminal proteolytic domain ALANTH_0620 PF01451 Low molecular weight phosphotyrosine protein phosphatase ALANTH_0621 PF13426 PAS domain ALANTH_0621 PF08447 PAS fold ALANTH_0621 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0623 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0623 PF08447 PAS fold ALANTH_0624 PF00672 HAMP domain ALANTH_0624 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0624 PF02203 Tar ligand binding domain homologue ALANTH_0628 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALANTH_0628 PF02785 Biotin carboxylase C-terminal domain ALANTH_0628 PF00289 Biotin carboxylase, N-terminal domain ALANTH_0629 PF01883 Iron-sulfur cluster assembly protein ALANTH_0630 PF02657 Fe-S metabolism associated domain ALANTH_0631 PF00266 Aminotransferase class-V ALANTH_0633 PF00005 ABC transporter ALANTH_0634 PF01458 Uncharacterized protein family (UPF0051) ALANTH_0635 PF04324 BFD-like [2Fe-2S] binding domain ALANTH_0635 PF01106 NifU-like domain ALANTH_0635 PF01592 NifU-like N terminal domain ALANTH_0636 PF00571 CBS domain ALANTH_0636 PF01769 Divalent cation transporter ALANTH_0636 PF03448 MgtE intracellular N domain ALANTH_0637 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_0638 PF00206 Lyase ALANTH_0638 PF14698 Argininosuccinate lyase C-terminal ALANTH_0639 PF01584 CheW-like domain ALANTH_0639 PF00072 Response regulator receiver domain ALANTH_0640 PF00899 ThiF family ALANTH_0641 PF01272 Transcription elongation factor, GreA/GreB, C-term ALANTH_0641 PF03449 Transcription elongation factor, N-terminal ALANTH_0643 PF12344 Ultra-violet resistance protein B ALANTH_0643 PF02151 UvrB/uvrC motif ALANTH_0643 PF04851 Type III restriction enzyme, res subunit ALANTH_0643 PF00271 Helicase conserved C-terminal domain ALANTH_0643 PF17757 UvrB interaction domain ALANTH_0644 PF10576 Iron-sulfur binding domain of endonuclease III ALANTH_0644 PF00633 Helix-hairpin-helix motif ALANTH_0644 PF00730 HhH-GPD superfamily base excision DNA repair protein ALANTH_0646 PF00672 HAMP domain ALANTH_0646 PF02203 Tar ligand binding domain homologue ALANTH_0646 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0649 PF02502 Ribose/Galactose Isomerase ALANTH_0650 PF10502 Signal peptidase, peptidase S26 ALANTH_0651 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ALANTH_0651 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ALANTH_0652 PF14693 Ribosomal protein TL5, C-terminal domain ALANTH_0652 PF01386 Ribosomal L25p family ALANTH_0653 PF01195 Peptidyl-tRNA hydrolase ALANTH_0656 PF01520 N-acetylmuramoyl-L-alanine amidase ALANTH_0658 PF01479 S4 domain ALANTH_0658 PF00579 tRNA synthetases class I (W and Y) ALANTH_0659 PF02824 TGS domain ALANTH_0659 PF04607 Region found in RelA / SpoT proteins ALANTH_0659 PF13291 ACT domain ALANTH_0660 PF01192 RNA polymerase Rpb6 ALANTH_0661 PF00696 Amino acid kinase family ALANTH_0670 PF01475 Ferric uptake regulator family ALANTH_0671 PF06965 Na+/H+ antiporter 1 ALANTH_0672 PF01475 Ferric uptake regulator family ALANTH_0674 PF03824 High-affinity nickel-transport protein ALANTH_0676 PF13302 Acetyltransferase (GNAT) domain ALANTH_0677 PF01053 Cys/Met metabolism PLP-dependent enzyme ALANTH_0678 PF01053 Cys/Met metabolism PLP-dependent enzyme ALANTH_0680 PF01068 ATP dependent DNA ligase domain ALANTH_0680 PF14743 DNA ligase OB-like domain ALANTH_0681 PF00156 Phosphoribosyl transferase domain ALANTH_0682 PF00291 Pyridoxal-phosphate dependent enzyme ALANTH_0684 PF02789 Cytosol aminopeptidase family, N-terminal domain ALANTH_0684 PF00883 Cytosol aminopeptidase family, catalytic domain ALANTH_0686 PF02472 Biopolymer transport protein ExbD/TolR ALANTH_0687 PF01618 MotA/TolQ/ExbB proton channel family ALANTH_0690 PF12704 MacB-like periplasmic core domain ALANTH_0690 PF02687 FtsX-like permease family ALANTH_0690 PF00005 ABC transporter ALANTH_0691 PF02687 FtsX-like permease family ALANTH_0691 PF12704 MacB-like periplasmic core domain ALANTH_0691 PF00005 ABC transporter ALANTH_0694 PF01351 Ribonuclease HII ALANTH_0695 PF10431 C-terminal, D2-small domain, of ClpB protein ALANTH_0695 PF02861 Clp amino terminal domain, pathogenicity island component ALANTH_0695 PF17871 AAA lid domain ALANTH_0695 PF07724 AAA domain (Cdc48 subfamily) ALANTH_0695 PF00004 ATPase family associated with various cellular activities (AAA) ALANTH_0696 PF00468 Ribosomal protein L34 ALANTH_0697 PF01809 Putative membrane protein insertion efficiency factor ALANTH_0698 PF14849 YidC periplasmic domain ALANTH_0698 PF02096 60Kd inner membrane protein ALANTH_0700 PF10396 GTP-binding protein TrmE N-terminus ALANTH_0700 PF12631 MnmE helical domain ALANTH_0700 PF01926 50S ribosome-binding GTPase ALANTH_0702 PF00300 Histidine phosphatase superfamily (branch 1) ALANTH_0705 PF00460 Flagella basal body rod protein ALANTH_0705 PF07196 Flagellin hook IN motif ALANTH_0707 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALANTH_0708 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ALANTH_0709 PF04715 Anthranilate synthase component I, N terminal region ALANTH_0709 PF00425 chorismate binding enzyme ALANTH_0711 PF00152 tRNA synthetases class II (D, K and N) ALANTH_0711 PF01336 OB-fold nucleic acid binding domain ALANTH_0713 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0713 PF08448 PAS fold ALANTH_0713 PF08447 PAS fold ALANTH_0714 PF04551 GcpE protein ALANTH_0715 PF00772 DnaB-like helicase N terminal domain ALANTH_0715 PF03796 DnaB-like helicase C terminal domain ALANTH_0716 PF08334 Type II secretion system (T2SS), protein G ALANTH_0716 PF07963 Prokaryotic N-terminal methylation motif ALANTH_0717 PF10415 Fumarase C C-terminus ALANTH_0717 PF00206 Lyase ALANTH_0720 PF02421 Ferrous iron transport protein B ALANTH_0720 PF17910 FeoB cytosolic helical domain ALANTH_0720 PF07664 Ferrous iron transport protein B C terminus ALANTH_0720 PF04023 FeoA domain ALANTH_0720 PF07670 Nucleoside recognition ALANTH_0721 PF04023 FeoA domain ALANTH_0723 PF00005 ABC transporter ALANTH_0728 PF02554 Carbon starvation protein CstA ALANTH_0728 PF13722 5TM C-terminal transporter carbon starvation CstA ALANTH_0729 PF06071 Protein of unknown function (DUF933) ALANTH_0729 PF01926 50S ribosome-binding GTPase ALANTH_0730 PF08668 HDOD domain ALANTH_0733 PF06865 Pyrimidine/purine nucleoside phosphorylase ALANTH_0734 PF00586 AIR synthase related protein, N-terminal domain ALANTH_0734 PF02769 AIR synthase related protein, C-terminal domain ALANTH_0735 PF01142 tRNA pseudouridine synthase D (TruD) ALANTH_0737 PF00672 HAMP domain ALANTH_0737 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0737 PF02203 Tar ligand binding domain homologue ALANTH_0738 PF01330 RuvA N terminal domain ALANTH_0738 PF07499 RuvA, C-terminal domain ALANTH_0739 PF01820 D-ala D-ala ligase N-terminus ALANTH_0739 PF07478 D-ala D-ala ligase C-terminus ALANTH_0741 PF08245 Mur ligase middle domain ALANTH_0741 PF02875 Mur ligase family, glutamate ligase domain ALANTH_0742 PF01230 HIT domain ALANTH_0744 PF01266 FAD dependent oxidoreductase ALANTH_0745 PF00338 Ribosomal protein S10p/S20e ALANTH_0746 PF00297 Ribosomal protein L3 ALANTH_0747 PF00573 Ribosomal protein L4/L1 family ALANTH_0748 PF00276 Ribosomal protein L23 ALANTH_0749 PF00181 Ribosomal Proteins L2, RNA binding domain ALANTH_0749 PF03947 Ribosomal Proteins L2, C-terminal domain ALANTH_0750 PF00203 Ribosomal protein S19 ALANTH_0751 PF00237 Ribosomal protein L22p/L17e ALANTH_0752 PF00189 Ribosomal protein S3, C-terminal domain ALANTH_0752 PF07650 KH domain ALANTH_0753 PF00252 Ribosomal protein L16p/L10e ALANTH_0754 PF00831 Ribosomal L29 protein ALANTH_0755 PF00366 Ribosomal protein S17 ALANTH_0756 PF00238 Ribosomal protein L14p/L23e ALANTH_0757 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ALANTH_0757 PF00467 KOW motif ALANTH_0758 PF00281 Ribosomal protein L5 ALANTH_0758 PF00673 ribosomal L5P family C-terminus ALANTH_0759 PF00253 Ribosomal protein S14p/S29e ALANTH_0760 PF00410 Ribosomal protein S8 ALANTH_0761 PF00347 Ribosomal protein L6 ALANTH_0762 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ALANTH_0763 PF00333 Ribosomal protein S5, N-terminal domain ALANTH_0763 PF03719 Ribosomal protein S5, C-terminal domain ALANTH_0764 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ALANTH_0765 PF00344 SecY translocase ALANTH_0766 PF00557 Metallopeptidase family M24 ALANTH_0767 PF01176 Translation initiation factor 1A / IF-1 ALANTH_0768 PF03167 Uracil DNA glycosylase superfamily ALANTH_0770 PF01336 OB-fold nucleic acid binding domain ALANTH_0770 PF02938 GAD domain ALANTH_0770 PF00152 tRNA synthetases class II (D, K and N) ALANTH_0775 PF00072 Response regulator receiver domain ALANTH_0777 PF00672 HAMP domain ALANTH_0777 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0777 PF02203 Tar ligand binding domain homologue ALANTH_0779 PF08448 PAS fold ALANTH_0779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0779 PF08447 PAS fold ALANTH_0780 PF00155 Aminotransferase class I and II ALANTH_0781 PF00465 Iron-containing alcohol dehydrogenase ALANTH_0782 PF02203 Tar ligand binding domain homologue ALANTH_0782 PF00672 HAMP domain ALANTH_0782 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0783 PF00842 Alanine racemase, C-terminal domain ALANTH_0783 PF01168 Alanine racemase, N-terminal domain ALANTH_0784 PF08459 UvrC Helix-hairpin-helix N-terminal ALANTH_0784 PF02151 UvrB/uvrC motif ALANTH_0784 PF01541 GIY-YIG catalytic domain ALANTH_0785 PF02203 Tar ligand binding domain homologue ALANTH_0785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0785 PF00672 HAMP domain ALANTH_0786 PF02203 Tar ligand binding domain homologue ALANTH_0786 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0786 PF00672 HAMP domain ALANTH_0787 PF02203 Tar ligand binding domain homologue ALANTH_0787 PF00672 HAMP domain ALANTH_0787 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0788 PF00072 Response regulator receiver domain ALANTH_0788 PF09308 LuxQ, periplasmic ALANTH_0788 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0788 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_0789 PF01590 GAF domain ALANTH_0789 PF00360 Phytochrome region ALANTH_0789 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_0789 PF00563 EAL domain ALANTH_0790 PF00873 AcrB/AcrD/AcrF family ALANTH_0791 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALANTH_0795 PF03372 Endonuclease/Exonuclease/phosphatase family ALANTH_0799 PF00342 Phosphoglucose isomerase ALANTH_0800 PF00483 Nucleotidyl transferase ALANTH_0801 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALANTH_0801 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALANTH_0801 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALANTH_0801 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALANTH_0808 PF13847 Methyltransferase domain ALANTH_0809 PF07715 TonB-dependent Receptor Plug Domain ALANTH_0809 PF00593 TonB dependent receptor ALANTH_0810 PF00593 TonB dependent receptor ALANTH_0810 PF07715 TonB-dependent Receptor Plug Domain ALANTH_0812 PF01312 FlhB HrpN YscU SpaS Family ALANTH_0814 PF03960 ArsC family ALANTH_0816 PF14493 Helix-turn-helix domain ALANTH_0816 PF05970 PIF1-like helicase ALANTH_0818 PF02491 SHS2 domain inserted in FTSA ALANTH_0819 PF12327 FtsZ family, C-terminal domain ALANTH_0819 PF00091 Tubulin/FtsZ family, GTPase domain ALANTH_0820 PF04143 Sulphur transport ALANTH_0822 PF00561 alpha/beta hydrolase fold ALANTH_0824 PF06965 Na+/H+ antiporter 1 ALANTH_0825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALANTH_0825 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALANTH_0825 PF02142 MGS-like domain ALANTH_0829 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALANTH_0829 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALANTH_0829 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALANTH_0830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ALANTH_0830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ALANTH_0831 PF00132 Bacterial transferase hexapeptide (six repeats) ALANTH_0832 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALANTH_0833 PF02719 Polysaccharide biosynthesis protein ALANTH_0834 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALANTH_0836 PF17836 PglD N-terminal domain ALANTH_0836 PF00132 Bacterial transferase hexapeptide (six repeats) ALANTH_0836 PF14602 Hexapeptide repeat of succinyl-transferase ALANTH_0837 PF01575 MaoC like domain ALANTH_0840 PF03102 NeuB family ALANTH_0840 PF08666 SAF domain ALANTH_0841 PF02350 UDP-N-acetylglucosamine 2-epimerase ALANTH_0842 PF00483 Nucleotidyl transferase ALANTH_0846 PF02348 Cytidylyltransferase ALANTH_0846 PF13472 GDSL-like Lipase/Acylhydrolase family ALANTH_0847 PF01943 Polysaccharide biosynthesis protein ALANTH_0849 PF00117 Glutamine amidotransferase class-I ALANTH_0850 PF00977 Histidine biosynthesis protein ALANTH_0854 PF01757 Acyltransferase family ALANTH_0855 PF16363 GDP-mannose 4,6 dehydratase ALANTH_0856 PF13439 Glycosyltransferase Family 4 ALANTH_0856 PF00534 Glycosyl transferases group 1 ALANTH_0857 PF01370 NAD dependent epimerase/dehydratase family ALANTH_0858 PF00953 Glycosyl transferase family 4 ALANTH_0859 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ALANTH_0860 PF02719 Polysaccharide biosynthesis protein ALANTH_0863 PF00561 alpha/beta hydrolase fold ALANTH_0866 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ALANTH_0870 PF00117 Glutamine amidotransferase class-I ALANTH_0870 PF00958 GMP synthase C terminal domain ALANTH_0870 PF02540 NAD synthase ALANTH_0871 PF00890 FAD binding domain ALANTH_0874 PF01863 Protein of unknown function DUF45 ALANTH_0875 PF00155 Aminotransferase class I and II ALANTH_0876 PF01966 HD domain ALANTH_0876 PF00072 Response regulator receiver domain ALANTH_0877 PF00211 Adenylate and Guanylate cyclase catalytic domain ALANTH_0882 PF03062 MBOAT, membrane-bound O-acyltransferase family ALANTH_0883 PF10672 S-adenosylmethionine-dependent methyltransferase ALANTH_0883 PF17785 PUA-like domain ALANTH_0884 PF02254 TrkA-N domain ALANTH_0884 PF00999 Sodium/hydrogen exchanger family ALANTH_0886 PF02028 BCCT, betaine/carnitine/choline family transporter ALANTH_0888 PF07715 TonB-dependent Receptor Plug Domain ALANTH_0888 PF00593 TonB dependent receptor ALANTH_0892 PF02600 Disulfide bond formation protein DsbB ALANTH_0895 PF08534 Redoxin ALANTH_0897 PF13419 Haloacid dehalogenase-like hydrolase ALANTH_0898 PF03641 Possible lysine decarboxylase ALANTH_0901 PF04333 MlaA lipoprotein ALANTH_0902 PF01709 Transcriptional regulator ALANTH_0906 PF00563 EAL domain ALANTH_0906 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_0906 PF03707 Bacterial signalling protein N terminal repeat ALANTH_0908 PF11791 Aconitate B N-terminal domain ALANTH_0908 PF00330 Aconitase family (aconitate hydratase) ALANTH_0908 PF06434 Aconitate hydratase 2 N-terminus ALANTH_0909 PF00156 Phosphoribosyl transferase domain ALANTH_0910 PF04241 Protein of unknown function (DUF423) ALANTH_0911 PF04461 Protein of unknown function (DUF520) ALANTH_0912 PF00293 NUDIX domain ALANTH_0914 PF02253 Phospholipase A1 ALANTH_0915 PF00834 Ribulose-phosphate 3 epimerase family ALANTH_0916 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ALANTH_0917 PF00929 Exonuclease ALANTH_0917 PF14579 Helix-hairpin-helix motif ALANTH_0917 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALANTH_0917 PF14480 DNA polymerase III polC-type N-terminus I ALANTH_0917 PF02811 PHP domain ALANTH_0917 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALANTH_0917 PF11490 DNA polymerase III polC-type N-terminus II ALANTH_0918 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0918 PF00672 HAMP domain ALANTH_0918 PF12729 Four helix bundle sensory module for signal transduction ALANTH_0920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALANTH_0921 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALANTH_0921 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ALANTH_0921 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ALANTH_0923 PF05175 Methyltransferase small domain ALANTH_0924 PF03692 Putative zinc- or iron-chelating domain ALANTH_0926 PF00218 Indole-3-glycerol phosphate synthase ALANTH_0927 PF03466 LysR substrate binding domain ALANTH_0927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALANTH_0928 PF01361 Tautomerase enzyme ALANTH_0930 PF17151 Periplasmic sensor domain ALANTH_0930 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_0932 PF01551 Peptidase family M23 ALANTH_0934 PF00005 ABC transporter ALANTH_0934 PF12848 ABC transporter ALANTH_0934 PF16326 ABC transporter C-terminal domain ALANTH_0935 PF03741 Integral membrane protein TerC family ALANTH_0936 PF13411 MerR HTH family regulatory protein ALANTH_0937 PF01556 DnaJ C terminal domain ALANTH_0937 PF00226 DnaJ domain ALANTH_0938 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_0938 PF08447 PAS fold ALANTH_0938 PF08448 PAS fold ALANTH_0940 PF00072 Response regulator receiver domain ALANTH_0943 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALANTH_0943 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALANTH_0943 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ALANTH_0944 PF00374 Nickel-dependent hydrogenase ALANTH_0945 PF01292 Prokaryotic cytochrome b561 ALANTH_0946 PF01750 Hydrogenase maturation protease ALANTH_0948 PF01300 Telomere recombination ALANTH_0948 PF00708 Acylphosphatase ALANTH_0948 PF17788 HypF Kae1-like domain ALANTH_0948 PF07503 HypF finger ALANTH_0950 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALANTH_0951 PF01455 HupF/HypC family ALANTH_0952 PF01924 Hydrogenase formation hypA family ALANTH_0954 PF07728 AAA domain (dynein-related subfamily) ALANTH_0954 PF12102 Domain of unknown function (DUF3578) ALANTH_0955 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALANTH_0955 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALANTH_0957 PF02769 AIR synthase related protein, C-terminal domain ALANTH_0957 PF00586 AIR synthase related protein, N-terminal domain ALANTH_0958 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ALANTH_0960 PF01891 Cobalt uptake substrate-specific transmembrane region ALANTH_0963 PF00005 ABC transporter ALANTH_0964 PF12320 Type 5 capsule protein repressor C-terminal domain ALANTH_0964 PF00149 Calcineurin-like phosphoesterase ALANTH_0965 PF13476 AAA domain ALANTH_0973 PF00216 Bacterial DNA-binding protein ALANTH_0975 PF01795 MraW methylase family ALANTH_0980 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ALANTH_0980 PF00056 lactate/malate dehydrogenase, NAD binding domain ALANTH_0981 PF03971 Monomeric isocitrate dehydrogenase ALANTH_0984 PF02687 FtsX-like permease family ALANTH_0984 PF12704 MacB-like periplasmic core domain ALANTH_0985 PF07516 SecA Wing and Scaffold domain ALANTH_0985 PF01043 SecA preprotein cross-linking domain ALANTH_0985 PF07517 SecA DEAD-like domain ALANTH_0985 PF00271 Helicase conserved C-terminal domain ALANTH_0985 PF02810 SEC-C motif ALANTH_0986 PF03548 Outer membrane lipoprotein carrier protein LolA ALANTH_0988 PF02203 Tar ligand binding domain homologue ALANTH_0988 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0988 PF00672 HAMP domain ALANTH_0989 PF00672 HAMP domain ALANTH_0989 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0989 PF02203 Tar ligand binding domain homologue ALANTH_0990 PF08269 Cache domain ALANTH_0990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_0993 PF00684 DnaJ central domain ALANTH_0993 PF00226 DnaJ domain ALANTH_0993 PF01556 DnaJ C terminal domain ALANTH_0995 PF00933 Glycosyl hydrolase family 3 N terminal domain ALANTH_0996 PF00005 ABC transporter ALANTH_0996 PF00664 ABC transporter transmembrane region ALANTH_0998 PF00486 Transcriptional regulatory protein, C terminal ALANTH_0998 PF00072 Response regulator receiver domain ALANTH_0999 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1001 PF08447 PAS fold ALANTH_1001 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1002 PF00672 HAMP domain ALANTH_1002 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1002 PF02203 Tar ligand binding domain homologue ALANTH_1003 PF01168 Alanine racemase, N-terminal domain ALANTH_1009 PF06067 Domain of unknown function (DUF932) ALANTH_1024 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALANTH_1024 PF11867 Domain of unknown function (DUF3387) ALANTH_1024 PF18766 SWI2/SNF2 ATPase ALANTH_1032 PF07804 HipA-like C-terminal domain ALANTH_1032 PF13657 HipA N-terminal domain ALANTH_1034 PF17820 PDZ domain ALANTH_1034 PF02163 Peptidase family M50 ALANTH_1035 PF01066 CDP-alcohol phosphatidyltransferase ALANTH_1037 PF00701 Dihydrodipicolinate synthetase family ALANTH_1038 PF00675 Insulinase (Peptidase family M16) ALANTH_1038 PF05193 Peptidase M16 inactive domain ALANTH_1039 PF01180 Dihydroorotate dehydrogenase ALANTH_1040 PF00005 ABC transporter ALANTH_1040 PF00664 ABC transporter transmembrane region ALANTH_1041 PF03023 Lipid II flippase MurJ ALANTH_1043 PF01475 Ferric uptake regulator family ALANTH_1044 PF02130 Uncharacterized protein family UPF0054 ALANTH_1045 PF18073 Rubredoxin metal binding domain ALANTH_1047 PF00034 Cytochrome c ALANTH_1047 PF03150 Di-haem cytochrome c peroxidase ALANTH_1048 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1048 PF03707 Bacterial signalling protein N terminal repeat ALANTH_1048 PF00563 EAL domain ALANTH_1050 PF00448 SRP54-type protein, GTPase domain ALANTH_1052 PF01812 5-formyltetrahydrofolate cyclo-ligase family ALANTH_1053 PF01966 HD domain ALANTH_1053 PF00013 KH domain ALANTH_1053 PF12072 Domain of unknown function (DUF3552) ALANTH_1055 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_1055 PF12911 N-terminal TM domain of oligopeptide transport permease C ALANTH_1057 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALANTH_1057 PF03466 LysR substrate binding domain ALANTH_1058 PF00593 TonB dependent receptor ALANTH_1058 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1059 PF12833 Helix-turn-helix domain ALANTH_1060 PF00106 short chain dehydrogenase ALANTH_1063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALANTH_1063 PF03466 LysR substrate binding domain ALANTH_1064 PF03601 Conserved hypothetical protein 698 ALANTH_1067 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALANTH_1067 PF02770 Acyl-CoA dehydrogenase, middle domain ALANTH_1067 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALANTH_1071 PF01638 HxlR-like helix-turn-helix ALANTH_1073 PF00881 Nitroreductase family ALANTH_1075 PF00005 ABC transporter ALANTH_1075 PF12848 ABC transporter ALANTH_1076 PF03061 Thioesterase superfamily ALANTH_1077 PF12826 Helix-hairpin-helix motif ALANTH_1077 PF03120 NAD-dependent DNA ligase OB-fold domain ALANTH_1077 PF01653 NAD-dependent DNA ligase adenylation domain ALANTH_1077 PF00533 BRCA1 C Terminus (BRCT) domain ALANTH_1078 PF03738 Glutathionylspermidine synthase preATP-grasp ALANTH_1081 PF05525 Branched-chain amino acid transport protein ALANTH_1083 PF05736 OprF membrane domain ALANTH_1083 PF00691 OmpA family ALANTH_1084 PF03412 Peptidase C39 family ALANTH_1084 PF00005 ABC transporter ALANTH_1084 PF00664 ABC transporter transmembrane region ALANTH_1085 PF13533 Biotin-lipoyl like ALANTH_1087 PF00196 Bacterial regulatory proteins, luxR family ALANTH_1087 PF17874 MalT-like TPR region ALANTH_1088 PF14659 Phage integrase, N-terminal SAM-like domain ALANTH_1088 PF00589 Phage integrase family ALANTH_1089 PF00216 Bacterial DNA-binding protein ALANTH_1090 PF18801 response regulator aspartate phosphatase H, N terminal ALANTH_1111 PF08275 DNA primase catalytic core, N-terminal domain ALANTH_1111 PF01807 CHC2 zinc finger ALANTH_1122 PF00563 EAL domain ALANTH_1122 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1122 PF10442 FIST C domain ALANTH_1122 PF08495 FIST N domain ALANTH_1123 PF00565 Staphylococcal nuclease homologue ALANTH_1157 PF00580 UvrD/REP helicase N-terminal domain ALANTH_1157 PF13361 UvrD-like helicase C-terminal domain ALANTH_1168 PF03743 Bacterial conjugation TrbI-like protein ALANTH_1175 PF06834 TraU protein ALANTH_1178 PF13087 AAA domain ALANTH_1178 PF13091 PLD-like domain ALANTH_1182 PF00589 Phage integrase family ALANTH_1182 PF02899 Phage integrase, N-terminal SAM-like domain ALANTH_1185 PF12320 Type 5 capsule protein repressor C-terminal domain ALANTH_1185 PF00149 Calcineurin-like phosphoesterase ALANTH_1186 PF00005 ABC transporter ALANTH_1188 PF08501 Shikimate dehydrogenase substrate binding domain ALANTH_1190 PF02578 Multi-copper polyphenol oxidoreductase laccase ALANTH_1191 PF00390 Malic enzyme, N-terminal domain ALANTH_1191 PF03949 Malic enzyme, NAD binding domain ALANTH_1191 PF01515 Phosphate acetyl/butaryl transferase ALANTH_1192 PF01842 ACT domain ALANTH_1192 PF00551 Formyl transferase ALANTH_1193 PF00588 SpoU rRNA Methylase family ALANTH_1198 PF00072 Response regulator receiver domain ALANTH_1198 PF00486 Transcriptional regulatory protein, C terminal ALANTH_1205 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALANTH_1206 PF01479 S4 domain ALANTH_1206 PF00849 RNA pseudouridylate synthase ALANTH_1207 PF13419 Haloacid dehalogenase-like hydrolase ALANTH_1210 PF00593 TonB dependent receptor ALANTH_1210 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1211 PF01497 Periplasmic binding protein ALANTH_1212 PF00005 ABC transporter ALANTH_1213 PF01032 FecCD transport family ALANTH_1214 PF00999 Sodium/hydrogen exchanger family ALANTH_1218 PF01761 3-dehydroquinate synthase ALANTH_1220 PF04055 Radical SAM superfamily ALANTH_1220 PF00919 Uncharacterized protein family UPF0004 ALANTH_1221 PF00004 ATPase family associated with various cellular activities (AAA) ALANTH_1221 PF17862 AAA+ lid domain ALANTH_1221 PF01434 Peptidase family M41 ALANTH_1223 PF00994 Probable molybdopterin binding domain ALANTH_1225 PF00005 ABC transporter ALANTH_1225 PF12848 ABC transporter ALANTH_1226 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALANTH_1228 PF13673 Acetyltransferase (GNAT) domain ALANTH_1232 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1232 PF00593 TonB dependent receptor ALANTH_1236 PF01638 HxlR-like helix-turn-helix ALANTH_1237 PF02525 Flavodoxin-like fold ALANTH_1238 PF00561 alpha/beta hydrolase fold ALANTH_1239 PF00440 Bacterial regulatory proteins, tetR family ALANTH_1239 PF16925 Tetracyclin repressor-like, C-terminal domain ALANTH_1240 PF01713 Smr domain ALANTH_1240 PF00488 MutS domain V ALANTH_1241 PF01595 Cyclin M transmembrane N-terminal domain ALANTH_1241 PF03471 Transporter associated domain ALANTH_1241 PF00571 CBS domain ALANTH_1243 PF00005 ABC transporter ALANTH_1244 PF01113 Dihydrodipicolinate reductase, N-terminus ALANTH_1244 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ALANTH_1246 PF06969 HemN C-terminal domain ALANTH_1246 PF04055 Radical SAM superfamily ALANTH_1247 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALANTH_1247 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALANTH_1248 PF03477 ATP cone domain ALANTH_1248 PF02867 Ribonucleotide reductase, barrel domain ALANTH_1248 PF00317 Ribonucleotide reductase, all-alpha domain ALANTH_1251 PF00072 Response regulator receiver domain ALANTH_1251 PF00486 Transcriptional regulatory protein, C terminal ALANTH_1252 PF08448 PAS fold ALANTH_1252 PF08447 PAS fold ALANTH_1252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1253 PF11008 Protein of unknown function (DUF2846) ALANTH_1254 PF00490 Delta-aminolevulinic acid dehydratase ALANTH_1255 PF00925 GTP cyclohydrolase II ALANTH_1256 PF02527 rRNA small subunit methyltransferase G ALANTH_1260 PF02092 Glycyl-tRNA synthetase beta subunit ALANTH_1261 PF03061 Thioesterase superfamily ALANTH_1263 PF01435 Peptidase family M48 ALANTH_1263 PF16491 CAAX prenyl protease N-terminal, five membrane helices ALANTH_1264 PF02646 RmuC family ALANTH_1266 PF04228 Putative neutral zinc metallopeptidase ALANTH_1268 PF00994 Probable molybdopterin binding domain ALANTH_1268 PF03454 MoeA C-terminal region (domain IV) ALANTH_1268 PF03453 MoeA N-terminal region (domain I and II) ALANTH_1270 PF01171 PP-loop family ALANTH_1275 PF02541 Ppx/GppA phosphatase family ALANTH_1277 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALANTH_1277 PF00205 Thiamine pyrophosphate enzyme, central domain ALANTH_1277 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALANTH_1278 PF10369 Small subunit of acetolactate synthase ALANTH_1279 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALANTH_1279 PF00132 Bacterial transferase hexapeptide (six repeats) ALANTH_1280 PF17854 FtsK alpha domain ALANTH_1280 PF09397 Ftsk gamma domain ALANTH_1280 PF01580 FtsK/SpoIIIE family ALANTH_1282 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ALANTH_1282 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ALANTH_1283 PF01926 50S ribosome-binding GTPase ALANTH_1283 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ALANTH_1284 PF00916 Sulfate permease family ALANTH_1284 PF01740 STAS domain ALANTH_1286 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ALANTH_1286 PF02843 Phosphoribosylglycinamide synthetase, C domain ALANTH_1286 PF02844 Phosphoribosylglycinamide synthetase, N domain ALANTH_1288 PF04453 LPS transport system D ALANTH_1288 PF03968 OstA-like protein ALANTH_1290 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ALANTH_1290 PF01138 3' exoribonuclease family, domain 1 ALANTH_1290 PF03725 3' exoribonuclease family, domain 2 ALANTH_1290 PF00575 S1 RNA binding domain ALANTH_1290 PF00013 KH domain ALANTH_1291 PF00072 Response regulator receiver domain ALANTH_1292 PF02895 Signal transducing histidine kinase, homodimeric domain ALANTH_1292 PF09078 CheY binding ALANTH_1292 PF01584 CheW-like domain ALANTH_1292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1292 PF01627 Hpt domain ALANTH_1293 PF01739 CheR methyltransferase, SAM binding domain ALANTH_1293 PF03705 CheR methyltransferase, all-alpha domain ALANTH_1294 PF03975 CheD chemotactic sensory transduction ALANTH_1295 PF01339 CheB methylesterase ALANTH_1295 PF00072 Response regulator receiver domain ALANTH_1296 PF07690 Major Facilitator Superfamily ALANTH_1297 PF18644 Phage integrase SAM-like domain ALANTH_1297 PF00589 Phage integrase family ALANTH_1300 PF01432 Peptidase family M3 ALANTH_1301 PF05175 Methyltransferase small domain ALANTH_1301 PF17827 PrmC N-terminal domain ALANTH_1302 PF06969 HemN C-terminal domain ALANTH_1302 PF04055 Radical SAM superfamily ALANTH_1303 PF00293 NUDIX domain ALANTH_1304 PF00696 Amino acid kinase family ALANTH_1304 PF13840 ACT domain ALANTH_1304 PF01842 ACT domain ALANTH_1306 PF12169 DNA polymerase III subunits gamma and tau domain III ALANTH_1307 PF00809 Pterin binding enzyme ALANTH_1309 PF01842 ACT domain ALANTH_1309 PF02153 Prephenate dehydrogenase ALANTH_1310 PF01103 Surface antigen ALANTH_1310 PF07244 Surface antigen variable number repeat ALANTH_1311 PF04055 Radical SAM superfamily ALANTH_1312 PF05193 Peptidase M16 inactive domain ALANTH_1313 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALANTH_1318 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ALANTH_1320 PF00133 tRNA synthetases class I (I, L, M and V) ALANTH_1320 PF09334 tRNA synthetases class I (M) ALANTH_1320 PF01588 Putative tRNA binding domain ALANTH_1324 PF00364 Biotin-requiring enzyme ALANTH_1325 PF01293 Phosphoenolpyruvate carboxykinase ALANTH_1326 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALANTH_1326 PF00925 GTP cyclohydrolase II ALANTH_1330 PF00360 Phytochrome region ALANTH_1330 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1330 PF01590 GAF domain ALANTH_1330 PF00563 EAL domain ALANTH_1331 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ALANTH_1332 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALANTH_1333 PF02540 NAD synthase ALANTH_1336 PF00226 DnaJ domain ALANTH_1336 PF05099 Tellurite resistance protein TerB ALANTH_1337 PF02416 mttA/Hcf106 family ALANTH_1338 PF00902 Sec-independent protein translocase protein (TatC) ALANTH_1339 PF02547 Queuosine biosynthesis protein ALANTH_1345 PF02754 Cysteine-rich domain ALANTH_1345 PF13183 4Fe-4S dicluster domain ALANTH_1345 PF02665 Nitrate reductase gamma subunit ALANTH_1346 PF01790 Prolipoprotein diacylglyceryl transferase ALANTH_1349 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1349 PF00672 HAMP domain ALANTH_1349 PF02203 Tar ligand binding domain homologue ALANTH_1350 PF00248 Aldo/keto reductase family ALANTH_1355 PF13662 Toprim domain ALANTH_1355 PF02132 RecR protein ALANTH_1356 PF00684 DnaJ central domain ALANTH_1356 PF00226 DnaJ domain ALANTH_1356 PF01556 DnaJ C terminal domain ALANTH_1360 PF00753 Metallo-beta-lactamase superfamily ALANTH_1361 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1362 PF03707 Bacterial signalling protein N terminal repeat ALANTH_1362 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1362 PF00563 EAL domain ALANTH_1362 PF13188 PAS domain ALANTH_1363 PF08003 Protein of unknown function (DUF1698) ALANTH_1364 PF00072 Response regulator receiver domain ALANTH_1364 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1365 PF00072 Response regulator receiver domain ALANTH_1365 PF00196 Bacterial regulatory proteins, luxR family ALANTH_1369 PF14659 Phage integrase, N-terminal SAM-like domain ALANTH_1369 PF00589 Phage integrase family ALANTH_1370 PF01578 Cytochrome C assembly protein ALANTH_1370 PF05140 ResB-like family ALANTH_1371 PF07687 Peptidase dimerisation domain ALANTH_1371 PF01546 Peptidase family M20/M25/M40 ALANTH_1373 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1373 PF02743 Cache domain ALANTH_1373 PF00672 HAMP domain ALANTH_1374 PF02203 Tar ligand binding domain homologue ALANTH_1374 PF00672 HAMP domain ALANTH_1374 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1375 PF00571 CBS domain ALANTH_1375 PF00478 IMP dehydrogenase / GMP reductase domain ALANTH_1376 PF01425 Amidase ALANTH_1377 PF01196 Ribosomal protein L17 ALANTH_1378 PF01000 RNA polymerase Rpb3/RpoA insert domain ALANTH_1378 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ALANTH_1378 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ALANTH_1379 PF01479 S4 domain ALANTH_1379 PF00163 Ribosomal protein S4/S9 N-terminal domain ALANTH_1380 PF00411 Ribosomal protein S11 ALANTH_1381 PF00416 Ribosomal protein S13/S18 ALANTH_1382 PF00444 Ribosomal protein L36 ALANTH_1385 PF00180 Isocitrate/isopropylmalate dehydrogenase ALANTH_1386 PF00694 Aconitase C-terminal domain ALANTH_1387 PF00140 Sigma-70 factor, region 1.2 ALANTH_1387 PF04542 Sigma-70 region 2 ALANTH_1387 PF04539 Sigma-70 region 3 ALANTH_1387 PF04545 Sigma-70, region 4 ALANTH_1392 PF00486 Transcriptional regulatory protein, C terminal ALANTH_1392 PF00072 Response regulator receiver domain ALANTH_1393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1393 PF08448 PAS fold ALANTH_1393 PF08447 PAS fold ALANTH_1398 PF00202 Aminotransferase class-III ALANTH_1399 PF05437 Branched-chain amino acid transport protein (AzlD) ALANTH_1400 PF03591 AzlC protein ALANTH_1402 PF01098 Cell cycle protein ALANTH_1403 PF00849 RNA pseudouridylate synthase ALANTH_1403 PF01479 S4 domain ALANTH_1405 PF02390 Putative methyltransferase ALANTH_1406 PF00005 ABC transporter ALANTH_1410 PF00905 Penicillin binding protein transpeptidase domain ALANTH_1410 PF03717 Penicillin-binding Protein dimerisation domain ALANTH_1411 PF00813 FliP family ALANTH_1412 PF11849 Domain of unknown function (DUF3369) ALANTH_1414 PF13533 Biotin-lipoyl like ALANTH_1415 PF00873 AcrB/AcrD/AcrF family ALANTH_1416 PF00873 AcrB/AcrD/AcrF family ALANTH_1418 PF01625 Peptide methionine sulfoxide reductase ALANTH_1418 PF08534 Redoxin ALANTH_1418 PF01641 SelR domain ALANTH_1419 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALANTH_1420 PF00875 DNA photolyase ALANTH_1420 PF03441 FAD binding domain of DNA photolyase ALANTH_1421 PF01370 NAD dependent epimerase/dehydratase family ALANTH_1421 PF08338 Domain of unknown function (DUF1731) ALANTH_1422 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALANTH_1422 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALANTH_1424 PF01367 5'-3' exonuclease, C-terminal SAM fold ALANTH_1424 PF00476 DNA polymerase family A ALANTH_1424 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALANTH_1425 PF02348 Cytidylyltransferase ALANTH_1426 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALANTH_1426 PF00005 ABC transporter ALANTH_1427 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ALANTH_1428 PF00591 Glycosyl transferase family, a/b domain ALANTH_1428 PF02885 Glycosyl transferase family, helical bundle domain ALANTH_1431 PF00764 Arginosuccinate synthase ALANTH_1432 PF00501 AMP-binding enzyme ALANTH_1432 PF13193 AMP-binding enzyme C-terminal domain ALANTH_1433 PF03062 MBOAT, membrane-bound O-acyltransferase family ALANTH_1436 PF00550 Phosphopantetheine attachment site ALANTH_1437 PF00132 Bacterial transferase hexapeptide (six repeats) ALANTH_1444 PF02581 Thiamine monophosphate synthase ALANTH_1444 PF08543 Phosphomethylpyrimidine kinase ALANTH_1445 PF00171 Aldehyde dehydrogenase family ALANTH_1448 PF12801 4Fe-4S binding domain ALANTH_1448 PF13746 4Fe-4S dicluster domain ALANTH_1448 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALANTH_1449 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1449 PF08447 PAS fold ALANTH_1449 PF08448 PAS fold ALANTH_1450 PF00072 Response regulator receiver domain ALANTH_1450 PF12833 Helix-turn-helix domain ALANTH_1451 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALANTH_1451 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALANTH_1456 PF00258 Flavodoxin ALANTH_1457 PF01475 Ferric uptake regulator family ALANTH_1459 PF07664 Ferrous iron transport protein B C terminus ALANTH_1459 PF02421 Ferrous iron transport protein B ALANTH_1459 PF07670 Nucleoside recognition ALANTH_1461 PF04377 Arginine-tRNA-protein transferase, C terminus ALANTH_1461 PF04376 Arginine-tRNA-protein transferase, N terminus ALANTH_1462 PF00290 Tryptophan synthase alpha chain ALANTH_1463 PF02548 Ketopantoate hydroxymethyltransferase ALANTH_1464 PF17864 RuvB AAA lid domain ALANTH_1464 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALANTH_1464 PF05491 RuvB C-terminal winged helix domain ALANTH_1465 PF01594 AI-2E family transporter ALANTH_1469 PF01594 AI-2E family transporter ALANTH_1470 PF03471 Transporter associated domain ALANTH_1470 PF00571 CBS domain ALANTH_1473 PF00464 Serine hydroxymethyltransferase ALANTH_1474 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALANTH_1474 PF02805 Metal binding domain of Ada ALANTH_1474 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALANTH_1474 PF12833 Helix-turn-helix domain ALANTH_1479 PF03594 Benzoate membrane transport protein ALANTH_1480 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ALANTH_1480 PF18381 YcaO cyclodehydratase C-terminal domain ALANTH_1482 PF03475 3-alpha domain ALANTH_1482 PF03473 MOSC domain ALANTH_1484 PF00005 ABC transporter ALANTH_1484 PF16326 ABC transporter C-terminal domain ALANTH_1484 PF12848 ABC transporter ALANTH_1486 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ALANTH_1486 PF14602 Hexapeptide repeat of succinyl-transferase ALANTH_1487 PF18074 Primosomal protein N C-terminal domain ALANTH_1487 PF17764 3′ DNA-binding domain (3′BD) ALANTH_1487 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ALANTH_1487 PF00270 DEAD/DEAH box helicase ALANTH_1487 PF00271 Helicase conserved C-terminal domain ALANTH_1493 PF01522 Polysaccharide deacetylase ALANTH_1493 PF03422 Carbohydrate binding module (family 6) ALANTH_1493 PF00457 Glycosyl hydrolases family 11 ALANTH_1494 PF05661 Protein of unknown function (DUF808) ALANTH_1497 PF12823 Domain of unknown function (DUF3817) ALANTH_1500 PF02926 THUMP domain ALANTH_1500 PF02568 Thiamine biosynthesis protein (ThiI) ALANTH_1504 PF00583 Acetyltransferase (GNAT) family ALANTH_1505 PF01926 50S ribosome-binding GTPase ALANTH_1509 PF00475 Imidazoleglycerol-phosphate dehydratase ALANTH_1510 PF03330 Lytic transglycolase ALANTH_1510 PF05036 Sporulation related domain ALANTH_1512 PF01026 TatD related DNase ALANTH_1514 PF07724 AAA domain (Cdc48 subfamily) ALANTH_1514 PF10431 C-terminal, D2-small domain, of ClpB protein ALANTH_1515 PF00227 Proteasome subunit ALANTH_1516 PF01281 Ribosomal protein L9, N-terminal domain ALANTH_1516 PF03948 Ribosomal protein L9, C-terminal domain ALANTH_1517 PF00239 Resolvase, N terminal domain ALANTH_1517 PF02796 Helix-turn-helix domain of resolvase ALANTH_1518 PF02441 Flavoprotein ALANTH_1519 PF01467 Cytidylyltransferase-like ALANTH_1520 PF02223 Thymidylate kinase ALANTH_1521 PF13393 Histidyl-tRNA synthetase ALANTH_1521 PF03129 Anticodon binding domain ALANTH_1522 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALANTH_1522 PF17944 Arginine decarboxylase C-terminal helical extension ALANTH_1522 PF17810 Arginine decarboxylase helical bundle domain ALANTH_1523 PF06426 Serine acetyltransferase, N-terminal ALANTH_1523 PF00132 Bacterial transferase hexapeptide (six repeats) ALANTH_1524 PF01925 Sulfite exporter TauE/SafE ALANTH_1525 PF17760 UvrA interaction domain ALANTH_1525 PF17755 UvrA DNA-binding domain ALANTH_1525 PF00005 ABC transporter ALANTH_1526 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1526 PF08447 PAS fold ALANTH_1528 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1528 PF10442 FIST C domain ALANTH_1528 PF08495 FIST N domain ALANTH_1528 PF00563 EAL domain ALANTH_1529 PF04055 Radical SAM superfamily ALANTH_1531 PF00456 Transketolase, thiamine diphosphate binding domain ALANTH_1531 PF17831 Pyruvate dehydrogenase E1 component middle domain ALANTH_1532 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALANTH_1532 PF00364 Biotin-requiring enzyme ALANTH_1532 PF02817 e3 binding domain ALANTH_1533 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALANTH_1533 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALANTH_1535 PF00893 Small Multidrug Resistance protein ALANTH_1536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1537 PF00486 Transcriptional regulatory protein, C terminal ALANTH_1537 PF00072 Response regulator receiver domain ALANTH_1539 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALANTH_1540 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1540 PF00593 TonB dependent receptor ALANTH_1545 PF18019 HD domain ALANTH_1545 PF00270 DEAD/DEAH box helicase ALANTH_1545 PF18395 Cas3 C-terminal domain ALANTH_1547 PF01867 CRISPR associated protein Cas1 ALANTH_1549 PF00403 Heavy-metal-associated domain ALANTH_1550 PF01022 Bacterial regulatory protein, arsR family ALANTH_1553 PF00075 RNase H ALANTH_1554 PF00682 HMGL-like ALANTH_1556 PF00440 Bacterial regulatory proteins, tetR family ALANTH_1556 PF16925 Tetracyclin repressor-like, C-terminal domain ALANTH_1558 PF00817 impB/mucB/samB family ALANTH_1558 PF11799 impB/mucB/samB family C-terminal domain ALANTH_1558 PF11798 IMS family HHH motif ALANTH_1560 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ALANTH_1560 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALANTH_1560 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALANTH_1561 PF00994 Probable molybdopterin binding domain ALANTH_1561 PF03454 MoeA C-terminal region (domain IV) ALANTH_1561 PF03453 MoeA N-terminal region (domain I and II) ALANTH_1562 PF00266 Aminotransferase class-V ALANTH_1563 PF02634 FdhD/NarQ family ALANTH_1565 PF13247 4Fe-4S dicluster domain ALANTH_1571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1571 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_1572 PF00072 Response regulator receiver domain ALANTH_1572 PF00158 Sigma-54 interaction domain ALANTH_1574 PF00593 TonB dependent receptor ALANTH_1574 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1578 PF01841 Transglutaminase-like superfamily ALANTH_1580 PF13247 4Fe-4S dicluster domain ALANTH_1581 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALANTH_1581 PF00384 Molybdopterin oxidoreductase ALANTH_1581 PF01568 Molydopterin dinucleotide binding domain ALANTH_1582 PF00586 AIR synthase related protein, N-terminal domain ALANTH_1582 PF02769 AIR synthase related protein, C-terminal domain ALANTH_1584 PF03841 L-seryl-tRNA selenium transferase ALANTH_1585 PF09107 Elongation factor SelB, winged helix ALANTH_1585 PF09106 Elongation factor SelB, winged helix ALANTH_1585 PF09105 Elongation factor SelB, winged helix ALANTH_1585 PF00009 Elongation factor Tu GTP binding domain ALANTH_1585 PF03144 Elongation factor Tu domain 2 ALANTH_1593 PF00989 PAS fold ALANTH_1593 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1593 PF08447 PAS fold ALANTH_1593 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_1596 PF01966 HD domain ALANTH_1597 PF08495 FIST N domain ALANTH_1597 PF10442 FIST C domain ALANTH_1597 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1597 PF00563 EAL domain ALANTH_1598 PF01243 Pyridoxamine 5'-phosphate oxidase ALANTH_1598 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALANTH_1600 PF03707 Bacterial signalling protein N terminal repeat ALANTH_1600 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1600 PF00563 EAL domain ALANTH_1601 PF00271 Helicase conserved C-terminal domain ALANTH_1601 PF00270 DEAD/DEAH box helicase ALANTH_1601 PF03880 DbpA RNA binding domain ALANTH_1605 PF00183 Hsp90 protein ALANTH_1606 PF01590 GAF domain ALANTH_1606 PF00563 EAL domain ALANTH_1606 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_1606 PF00360 Phytochrome region ALANTH_1610 PF07883 Cupin domain ALANTH_1610 PF12833 Helix-turn-helix domain ALANTH_1611 PF00593 TonB dependent receptor ALANTH_1611 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1612 PF00023 Ankyrin repeat ALANTH_1612 PF12796 Ankyrin repeats (3 copies) ALANTH_1613 PF00199 Catalase ALANTH_1613 PF06628 Catalase-related immune-responsive ALANTH_1614 PF02470 MlaD protein ALANTH_1615 PF04403 Paraquat-inducible protein A ALANTH_1621 PF04073 Aminoacyl-tRNA editing domain ALANTH_1623 PF08713 DNA alkylation repair enzyme ALANTH_1625 PF01965 DJ-1/PfpI family ALANTH_1626 PF12849 PBP superfamily domain ALANTH_1627 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_1628 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_1629 PF00005 ABC transporter ALANTH_1630 PF02321 Outer membrane efflux protein ALANTH_1631 PF00005 ABC transporter ALANTH_1631 PF02687 FtsX-like permease family ALANTH_1631 PF12704 MacB-like periplasmic core domain ALANTH_1632 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALANTH_1636 PF00313 'Cold-shock' DNA-binding domain ALANTH_1637 PF05958 tRNA (Uracil-5-)-methyltransferase ALANTH_1638 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1638 PF00593 TonB dependent receptor ALANTH_1638 PF07660 Secretin and TonB N terminus short domain ALANTH_1641 PF00491 Arginase family ALANTH_1642 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1642 PF00593 TonB dependent receptor ALANTH_1646 PF08281 Sigma-70, region 4 ALANTH_1646 PF04542 Sigma-70 region 2 ALANTH_1647 PF08502 LeuA allosteric (dimerisation) domain ALANTH_1647 PF00682 HMGL-like ALANTH_1648 PF06719 AraC-type transcriptional regulator N-terminus ALANTH_1648 PF12833 Helix-turn-helix domain ALANTH_1649 PF00958 GMP synthase C terminal domain ALANTH_1649 PF03352 Methyladenine glycosylase ALANTH_1649 PF13302 Acetyltransferase (GNAT) domain ALANTH_1649 PF13673 Acetyltransferase (GNAT) domain ALANTH_1649 PF00117 Glutamine amidotransferase class-I ALANTH_1650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALANTH_1650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALANTH_1651 PF00924 Mechanosensitive ion channel ALANTH_1652 PF01368 DHH family ALANTH_1652 PF02833 DHHA2 domain ALANTH_1655 PF00206 Lyase ALANTH_1655 PF10415 Fumarase C C-terminus ALANTH_1656 PF01048 Phosphorylase superfamily ALANTH_1657 PF00698 Acyl transferase domain ALANTH_1658 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALANTH_1661 PF04052 TolB amino-terminal domain ALANTH_1663 PF02472 Biopolymer transport protein ExbD/TolR ALANTH_1664 PF01618 MotA/TolQ/ExbB proton channel family ALANTH_1665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ALANTH_1666 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALANTH_1666 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALANTH_1667 PF00231 ATP synthase ALANTH_1668 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALANTH_1668 PF00306 ATP synthase alpha/beta chain, C terminal domain ALANTH_1668 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALANTH_1669 PF00213 ATP synthase delta (OSCP) subunit ALANTH_1670 PF00430 ATP synthase B/B' CF(0) ALANTH_1672 PF02195 ParB-like nuclease domain ALANTH_1672 PF17762 HTH domain found in ParB protein ALANTH_1673 PF13614 AAA domain ALANTH_1675 PF00137 ATP synthase subunit C ALANTH_1680 PF04116 Fatty acid hydroxylase superfamily ALANTH_1681 PF03150 Di-haem cytochrome c peroxidase ALANTH_1683 PF02911 Formyl transferase, C-terminal domain ALANTH_1683 PF00551 Formyl transferase ALANTH_1684 PF00696 Amino acid kinase family ALANTH_1685 PF01018 GTP1/OBG ALANTH_1685 PF01926 50S ribosome-binding GTPase ALANTH_1686 PF01016 Ribosomal L27 protein ALANTH_1687 PF00829 Ribosomal prokaryotic L21 protein ALANTH_1688 PF13662 Toprim domain ALANTH_1688 PF16730 DnaG-primase C-terminal, helicase-binding domain ALANTH_1688 PF08275 DNA primase catalytic core, N-terminal domain ALANTH_1688 PF01807 CHC2 zinc finger ALANTH_1690 PF14622 Ribonuclease-III-like ALANTH_1690 PF00035 Double-stranded RNA binding motif ALANTH_1691 PF01264 Chorismate synthase ALANTH_1692 PF03976 Polyphosphate kinase 2 (PPK2) ALANTH_1695 PF01625 Peptide methionine sulfoxide reductase ALANTH_1697 PF01641 SelR domain ALANTH_1700 PF00202 Aminotransferase class-III ALANTH_1701 PF08448 PAS fold ALANTH_1701 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1701 PF08447 PAS fold ALANTH_1702 PF01808 AICARFT/IMPCHase bienzyme ALANTH_1702 PF02142 MGS-like domain ALANTH_1703 PF02769 AIR synthase related protein, C-terminal domain ALANTH_1703 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ALANTH_1703 PF00586 AIR synthase related protein, N-terminal domain ALANTH_1705 PF01551 Peptidase family M23 ALANTH_1705 PF01464 Transglycosylase SLT domain ALANTH_1705 PF10145 Phage-related minor tail protein ALANTH_1706 PF01227 GTP cyclohydrolase I ALANTH_1707 PF01544 CorA-like Mg2+ transporter protein ALANTH_1708 PF00482 Type II secretion system (T2SS), protein F ALANTH_1709 PF00437 Type II/IV secretion system protein ALANTH_1712 PF07650 KH domain ALANTH_1712 PF01926 50S ribosome-binding GTPase ALANTH_1714 PF13335 Magnesium chelatase, subunit ChlI C-terminal ALANTH_1714 PF01078 Magnesium chelatase, subunit ChlI ALANTH_1715 PF02203 Tar ligand binding domain homologue ALANTH_1715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1715 PF00672 HAMP domain ALANTH_1716 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1716 PF08447 PAS fold ALANTH_1718 PF01327 Polypeptide deformylase ALANTH_1719 PF00574 Clp protease ALANTH_1720 PF05698 Bacterial trigger factor protein (TF) C-terminus ALANTH_1720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALANTH_1720 PF05697 Bacterial trigger factor protein (TF) ALANTH_1721 PF03976 Polyphosphate kinase 2 (PPK2) ALANTH_1722 PF03976 Polyphosphate kinase 2 (PPK2) ALANTH_1723 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALANTH_1724 PF03435 Saccharopine dehydrogenase NADP binding domain ALANTH_1724 PF16653 Saccharopine dehydrogenase C-terminal domain ALANTH_1733 PF04055 Radical SAM superfamily ALANTH_1734 PF01208 Uroporphyrinogen decarboxylase (URO-D) ALANTH_1736 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALANTH_1736 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALANTH_1737 PF03989 DNA gyrase C-terminal domain, beta-propeller ALANTH_1737 PF00521 DNA gyrase/topoisomerase IV, subunit A ALANTH_1739 PF01960 ArgJ family ALANTH_1741 PF00830 Ribosomal L28 family ALANTH_1743 PF08645 Polynucleotide kinase 3 phosphatase ALANTH_1744 PF01370 NAD dependent epimerase/dehydratase family ALANTH_1745 PF00294 pfkB family carbohydrate kinase ALANTH_1745 PF01467 Cytidylyltransferase-like ALANTH_1746 PF13580 SIS domain ALANTH_1748 PF08019 Phosphoethanolamine transferase EptA/EptB ALANTH_1748 PF00884 Sulfatase ALANTH_1749 PF01219 Prokaryotic diacylglycerol kinase ALANTH_1750 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALANTH_1752 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALANTH_1753 PF00535 Glycosyl transferase family 2 ALANTH_1755 PF13439 Glycosyltransferase Family 4 ALANTH_1755 PF00534 Glycosyl transferases group 1 ALANTH_1758 PF03062 MBOAT, membrane-bound O-acyltransferase family ALANTH_1762 PF00535 Glycosyl transferase family 2 ALANTH_1764 PF00535 Glycosyl transferase family 2 ALANTH_1765 PF16363 GDP-mannose 4,6 dehydratase ALANTH_1766 PF04321 RmlD substrate binding domain ALANTH_1767 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ALANTH_1768 PF00483 Nucleotidyl transferase ALANTH_1774 PF00037 4Fe-4S binding domain ALANTH_1778 PF03958 Bacterial type II/III secretion system short domain ALANTH_1778 PF00263 Bacterial type II and III secretion system protein ALANTH_1779 PF09186 Domain of unknown function (DUF1949) ALANTH_1779 PF01205 Uncharacterized protein family UPF0029 ALANTH_1781 PF01728 FtsJ-like methyltransferase ALANTH_1781 PF01479 S4 domain ALANTH_1782 PF06574 FAD synthetase ALANTH_1782 PF01687 Riboflavin kinase ALANTH_1783 PF13649 Methyltransferase domain ALANTH_1784 PF00578 AhpC/TSA family ALANTH_1786 PF02913 FAD linked oxidases, C-terminal domain ALANTH_1786 PF01565 FAD binding domain ALANTH_1787 PF03631 Virulence factor BrkB ALANTH_1789 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALANTH_1790 PF00892 EamA-like transporter family ALANTH_1791 PF00793 DAHP synthetase I family ALANTH_1793 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALANTH_1794 PF01029 NusB family ALANTH_1795 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ALANTH_1805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1805 PF09456 RcsC Alpha-Beta-Loop (ABL) ALANTH_1805 PF00072 Response regulator receiver domain ALANTH_1805 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_1810 PF00623 RNA polymerase Rpb1, domain 2 ALANTH_1810 PF04997 RNA polymerase Rpb1, domain 1 ALANTH_1810 PF04983 RNA polymerase Rpb1, domain 3 ALANTH_1810 PF05000 RNA polymerase Rpb1, domain 4 ALANTH_1810 PF04998 RNA polymerase Rpb1, domain 5 ALANTH_1811 PF00562 RNA polymerase Rpb2, domain 6 ALANTH_1811 PF04560 RNA polymerase Rpb2, domain 7 ALANTH_1811 PF10385 RNA polymerase beta subunit external 1 domain ALANTH_1811 PF04561 RNA polymerase Rpb2, domain 2 ALANTH_1811 PF04563 RNA polymerase beta subunit ALANTH_1811 PF04565 RNA polymerase Rpb2, domain 3 ALANTH_1812 PF00542 Ribosomal protein L7/L12 C-terminal domain ALANTH_1812 PF16320 Ribosomal protein L7/L12 dimerisation domain ALANTH_1813 PF00466 Ribosomal protein L10 ALANTH_1814 PF00687 Ribosomal protein L1p/L10e family ALANTH_1815 PF00298 Ribosomal protein L11, RNA binding domain ALANTH_1815 PF03946 Ribosomal protein L11, N-terminal domain ALANTH_1816 PF02357 Transcription termination factor nusG ALANTH_1819 PF00471 Ribosomal protein L33 ALANTH_1820 PF00009 Elongation factor Tu GTP binding domain ALANTH_1820 PF03144 Elongation factor Tu domain 2 ALANTH_1820 PF03143 Elongation factor Tu C-terminal domain ALANTH_1825 PF08245 Mur ligase middle domain ALANTH_1826 PF00953 Glycosyl transferase family 4 ALANTH_1826 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ALANTH_1827 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ALANTH_1827 PF01676 Metalloenzyme superfamily ALANTH_1828 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALANTH_1828 PF00005 ABC transporter ALANTH_1829 PF00912 Transglycosylase ALANTH_1829 PF00905 Penicillin binding protein transpeptidase domain ALANTH_1830 PF00120 Glutamine synthetase, catalytic domain ALANTH_1830 PF03951 Glutamine synthetase, beta-Grasp domain ALANTH_1832 PF02391 MoaE protein ALANTH_1834 PF02621 Menaquinone biosynthesis ALANTH_1835 PF02673 Bacitracin resistance protein BacA ALANTH_1836 PF04101 Glycosyltransferase family 28 C-terminal domain ALANTH_1836 PF03033 Glycosyltransferase family 28 N-terminal domain ALANTH_1837 PF01098 Cell cycle protein ALANTH_1838 PF00905 Penicillin binding protein transpeptidase domain ALANTH_1838 PF03793 PASTA domain ALANTH_1838 PF03717 Penicillin-binding Protein dimerisation domain ALANTH_1839 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALANTH_1846 PF10431 C-terminal, D2-small domain, of ClpB protein ALANTH_1846 PF02861 Clp amino terminal domain, pathogenicity island component ALANTH_1846 PF17871 AAA lid domain ALANTH_1846 PF00004 ATPase family associated with various cellular activities (AAA) ALANTH_1846 PF07724 AAA domain (Cdc48 subfamily) ALANTH_1847 PF02617 ATP-dependent Clp protease adaptor protein ClpS ALANTH_1850 PF13193 AMP-binding enzyme C-terminal domain ALANTH_1850 PF00501 AMP-binding enzyme ALANTH_1851 PF01575 MaoC like domain ALANTH_1855 PF00672 HAMP domain ALANTH_1855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1855 PF02203 Tar ligand binding domain homologue ALANTH_1856 PF01741 Large-conductance mechanosensitive channel, MscL ALANTH_1860 PF07660 Secretin and TonB N terminus short domain ALANTH_1860 PF00593 TonB dependent receptor ALANTH_1860 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1861 PF01613 Flavin reductase like domain ALANTH_1863 PF00771 FHIPEP family ALANTH_1864 PF00669 Bacterial flagellin N-terminal helical region ALANTH_1864 PF00700 Bacterial flagellin C-terminal helical region ALANTH_1865 PF18269 T3SS EscN ATPase C-terminal domain ALANTH_1865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALANTH_1867 PF01312 FlhB HrpN YscU SpaS Family ALANTH_1870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALANTH_1870 PF00460 Flagella basal body rod protein ALANTH_1871 PF02049 Flagellar hook-basal body complex protein FliE ALANTH_1873 PF10609 NUBPL iron-transfer P-loop NTPase ALANTH_1874 PF00448 SRP54-type protein, GTPase domain ALANTH_1878 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALANTH_1878 PF16973 Flagellar motor switch protein FliN N-terminal ALANTH_1882 PF00460 Flagella basal body rod protein ALANTH_1882 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALANTH_1882 PF07196 Flagellin hook IN motif ALANTH_1882 PF07559 Flagellar basal body protein FlaE ALANTH_1883 PF07559 Flagellar basal body protein FlaE ALANTH_1883 PF07196 Flagellin hook IN motif ALANTH_1883 PF00460 Flagella basal body rod protein ALANTH_1883 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALANTH_1885 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALANTH_1887 PF14842 FliG N-terminal domain ALANTH_1887 PF01706 FliG C-terminal domain ALANTH_1887 PF14841 FliG middle domain ALANTH_1888 PF01514 Secretory protein of YscJ/FliF family ALANTH_1888 PF08345 Flagellar M-ring protein C-terminal ALANTH_1889 PF00460 Flagella basal body rod protein ALANTH_1890 PF00460 Flagella basal body rod protein ALANTH_1890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALANTH_1892 PF00072 Response regulator receiver domain ALANTH_1893 PF00460 Flagella basal body rod protein ALANTH_1893 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALANTH_1896 PF01782 RimM N-terminal domain ALANTH_1898 PF00886 Ribosomal protein S16 ALANTH_1899 PF02881 SRP54-type protein, helical bundle domain ALANTH_1899 PF00448 SRP54-type protein, GTPase domain ALANTH_1899 PF02978 Signal peptide binding domain ALANTH_1900 PF00849 RNA pseudouridylate synthase ALANTH_1900 PF01479 S4 domain ALANTH_1901 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ALANTH_1901 PF02390 Putative methyltransferase ALANTH_1903 PF01784 NIF3 (NGG1p interacting factor 3) ALANTH_1904 PF02091 Glycyl-tRNA synthetase alpha subunit ALANTH_1906 PF00731 AIR carboxylase ALANTH_1908 PF01136 Peptidase family U32 ALANTH_1909 PF17200 Single Cache domain 2 ALANTH_1909 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_1909 PF00672 HAMP domain ALANTH_1910 PF13476 AAA domain ALANTH_1911 PF01513 ATP-NAD kinase ALANTH_1912 PF03144 Elongation factor Tu domain 2 ALANTH_1912 PF00679 Elongation factor G C-terminus ALANTH_1912 PF14492 Elongation Factor G, domain II ALANTH_1912 PF03764 Elongation factor G, domain IV ALANTH_1912 PF00009 Elongation factor Tu GTP binding domain ALANTH_1913 PF00177 Ribosomal protein S7p/S5e ALANTH_1914 PF00164 Ribosomal protein S12/S23 ALANTH_1916 PF07690 Major Facilitator Superfamily ALANTH_1917 PF00593 TonB dependent receptor ALANTH_1917 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1920 PF00005 ABC transporter ALANTH_1921 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_1922 PF00512 His Kinase A (phospho-acceptor) domain ALANTH_1922 PF00989 PAS fold ALANTH_1922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALANTH_1923 PF12833 Helix-turn-helix domain ALANTH_1923 PF00072 Response regulator receiver domain ALANTH_1924 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1924 PF00593 TonB dependent receptor ALANTH_1935 PF00117 Glutamine amidotransferase class-I ALANTH_1936 PF13416 Bacterial extracellular solute-binding protein ALANTH_1937 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_1938 PF00005 ABC transporter ALANTH_1938 PF08402 TOBE domain ALANTH_1939 PF02311 AraC-like ligand binding domain ALANTH_1939 PF12833 Helix-turn-helix domain ALANTH_1940 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1940 PF00593 TonB dependent receptor ALANTH_1941 PF00593 TonB dependent receptor ALANTH_1941 PF07660 Secretin and TonB N terminus short domain ALANTH_1941 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1942 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1942 PF00593 TonB dependent receptor ALANTH_1946 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALANTH_1946 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALANTH_1949 PF17674 HHH domain ALANTH_1949 PF00575 S1 RNA binding domain ALANTH_1949 PF09371 Tex-like protein N-terminal domain ALANTH_1949 PF16921 Tex protein YqgF-like domain ALANTH_1950 PF07690 Major Facilitator Superfamily ALANTH_1951 PF07715 TonB-dependent Receptor Plug Domain ALANTH_1951 PF00593 TonB dependent receptor ALANTH_1953 PF01042 Endoribonuclease L-PSP ALANTH_1956 PF00155 Aminotransferase class I and II ALANTH_1958 PF09335 SNARE associated Golgi protein ALANTH_1959 PF01245 Ribosomal protein L19 ALANTH_1960 PF01746 tRNA (Guanine-1)-methyltransferase ALANTH_1962 PF08267 Cobalamin-independent synthase, N-terminal domain ALANTH_1962 PF01717 Cobalamin-independent synthase, Catalytic domain ALANTH_1964 PF13291 ACT domain ALANTH_1964 PF00291 Pyridoxal-phosphate dependent enzyme ALANTH_1965 PF00119 ATP synthase A chain ALANTH_1967 PF05538 Campylobacter major outer membrane protein ALANTH_1968 PF13361 UvrD-like helicase C-terminal domain ALANTH_1968 PF00580 UvrD/REP helicase N-terminal domain ALANTH_1969 PF00696 Amino acid kinase family ALANTH_1970 PF00291 Pyridoxal-phosphate dependent enzyme ALANTH_1971 PF00355 Rieske [2Fe-2S] domain ALANTH_1971 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ALANTH_1972 PF00032 Cytochrome b(C-terminal)/b6/petD ALANTH_1972 PF00033 Cytochrome b/b6/petB ALANTH_1975 PF04452 RNA methyltransferase ALANTH_1977 PF06508 Queuosine biosynthesis protein QueC ALANTH_1981 PF00550 Phosphopantetheine attachment site ALANTH_1982 PF00109 Beta-ketoacyl synthase, N-terminal domain ALANTH_1982 PF02801 Beta-ketoacyl synthase, C-terminal domain ALANTH_1983 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ALANTH_1984 PF01230 HIT domain ALANTH_1985 PF01409 tRNA synthetases class II core domain (F) ALANTH_1985 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ALANTH_1986 PF03147 Ferredoxin-fold anticodon binding domain ALANTH_1986 PF01588 Putative tRNA binding domain ALANTH_1986 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ALANTH_1986 PF03484 tRNA synthetase B5 domain ALANTH_1987 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALANTH_1988 PF02401 LytB protein ALANTH_1989 PF00575 S1 RNA binding domain ALANTH_1990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALANTH_1990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALANTH_1990 PF01842 ACT domain ALANTH_1991 PF09285 Elongation factor P, C-terminal ALANTH_1991 PF08207 Elongation factor P (EF-P) KOW-like domain ALANTH_1991 PF01132 Elongation factor P (EF-P) OB domain ALANTH_1992 PF01872 RibD C-terminal domain ALANTH_1992 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALANTH_1993 PF02576 RimP N-terminal domain ALANTH_1994 PF02033 Ribosome-binding factor A ALANTH_1995 PF00009 Elongation factor Tu GTP binding domain ALANTH_1995 PF11987 Translation-initiation factor 2 ALANTH_1995 PF04760 Translation initiation factor IF-2, N-terminal region ALANTH_1997 PF08544 GHMP kinases C terminal ALANTH_1997 PF00288 GHMP kinases N terminal domain ALANTH_1999 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ALANTH_2001 PF01368 DHH family ALANTH_2001 PF02272 DHHA1 domain ALANTH_2002 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALANTH_2002 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALANTH_2003 PF02445 Quinolinate synthetase A protein ALANTH_2004 PF02660 Glycerol-3-phosphate acyltransferase ALANTH_2007 PF03462 PCRF domain ALANTH_2007 PF00472 RF-1 domain ALANTH_2008 PF01569 PAP2 superfamily ALANTH_2009 PF12705 PD-(D/E)XK nuclease superfamily ALANTH_2014 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALANTH_2014 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALANTH_2017 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALANTH_2018 PF01668 SmpB protein ALANTH_2019 PF00288 GHMP kinases N terminal domain ALANTH_2020 PF01509 TruB family pseudouridylate synthase (N terminal domain) ALANTH_2021 PF00580 UvrD/REP helicase N-terminal domain ALANTH_2021 PF13361 UvrD-like helicase C-terminal domain ALANTH_2022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALANTH_2022 PF03466 LysR substrate binding domain ALANTH_2023 PF04055 Radical SAM superfamily ALANTH_2023 PF16199 Radical_SAM C-terminal domain ALANTH_2024 PF13537 Glutamine amidotransferase domain ALANTH_2024 PF00156 Phosphoribosyl transferase domain ALANTH_2025 PF05173 Dihydrodipicolinate reductase, C-terminus ALANTH_2025 PF01113 Dihydrodipicolinate reductase, N-terminus ALANTH_2026 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALANTH_2027 PF00085 Thioredoxin ALANTH_2028 PF02272 DHHA1 domain ALANTH_2028 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALANTH_2028 PF01411 tRNA synthetases class II (A) ALANTH_2033 PF07715 TonB-dependent Receptor Plug Domain ALANTH_2033 PF00593 TonB dependent receptor ALANTH_2035 PF08281 Sigma-70, region 4 ALANTH_2035 PF04542 Sigma-70 region 2 ALANTH_2036 PF02203 Tar ligand binding domain homologue ALANTH_2036 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_2036 PF00672 HAMP domain ALANTH_2037 PF02203 Tar ligand binding domain homologue ALANTH_2037 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_2037 PF00672 HAMP domain ALANTH_2041 PF00486 Transcriptional regulatory protein, C terminal ALANTH_2041 PF00072 Response regulator receiver domain ALANTH_2042 PF17820 PDZ domain ALANTH_2042 PF13180 PDZ domain ALANTH_2043 PF00920 Dehydratase family ALANTH_2049 PF01142 tRNA pseudouridine synthase D (TruD) ALANTH_2050 PF15437 Plasminogen-binding protein pgbA C-terminal ALANTH_2052 PF13180 PDZ domain ALANTH_2052 PF03572 Peptidase family S41 ALANTH_2053 PF01259 SAICAR synthetase ALANTH_2054 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ALANTH_2057 PF01553 Acyltransferase ALANTH_2058 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ALANTH_2059 PF02416 mttA/Hcf106 family ALANTH_2060 PF00750 tRNA synthetases class I (R) ALANTH_2060 PF05746 DALR anticodon binding domain ALANTH_2060 PF03485 Arginyl tRNA synthetase N terminal domain ALANTH_2064 PF01467 Cytidylyltransferase-like ALANTH_2066 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALANTH_2066 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALANTH_2067 PF00162 Phosphoglycerate kinase ALANTH_2068 PF00121 Triosephosphate isomerase ALANTH_2070 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALANTH_2070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALANTH_2071 PF01842 ACT domain ALANTH_2071 PF00800 Prephenate dehydratase ALANTH_2071 PF01817 Chorismate mutase type II ALANTH_2072 PF00155 Aminotransferase class I and II ALANTH_2073 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALANTH_2073 PF02779 Transketolase, pyrimidine binding domain ALANTH_2073 PF02780 Transketolase, C-terminal domain ALANTH_2074 PF03150 Di-haem cytochrome c peroxidase ALANTH_2074 PF00034 Cytochrome c ALANTH_2075 PF02545 Maf-like protein ALANTH_2077 PF00877 NlpC/P60 family ALANTH_2079 PF00939 Sodium:sulfate symporter transmembrane region ALANTH_2081 PF02683 Cytochrome C biogenesis protein transmembrane region ALANTH_2081 PF00085 Thioredoxin ALANTH_2081 PF11412 Disulphide bond corrector protein DsbC ALANTH_2082 PF00085 Thioredoxin ALANTH_2083 PF08443 RimK-like ATP-grasp domain ALANTH_2083 PF18030 RimK PreATP-grasp domain ALANTH_2086 PF10442 FIST C domain ALANTH_2086 PF08495 FIST N domain ALANTH_2086 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_2086 PF00563 EAL domain ALANTH_2087 PF02666 Phosphatidylserine decarboxylase ALANTH_2089 PF03562 MltA specific insert domain ALANTH_2089 PF06725 3D domain ALANTH_2090 PF00012 Hsp70 protein ALANTH_2091 PF01025 GrpE ALANTH_2092 PF01628 HrcA protein C terminal domain ALANTH_2094 PF00756 Putative esterase ALANTH_2095 PF01416 tRNA pseudouridine synthase ALANTH_2098 PF01255 Putative undecaprenyl diphosphate synthase ALANTH_2099 PF04127 DNA / pantothenate metabolism flavoprotein ALANTH_2099 PF02441 Flavoprotein ALANTH_2100 PF12804 MobA-like NTP transferase domain ALANTH_2100 PF14602 Hexapeptide repeat of succinyl-transferase ALANTH_2102 PF00271 Helicase conserved C-terminal domain ALANTH_2102 PF00270 DEAD/DEAH box helicase ALANTH_2102 PF17191 RecG wedge domain ALANTH_2103 PF05958 tRNA (Uracil-5-)-methyltransferase ALANTH_2104 PF00700 Bacterial flagellin C-terminal helical region ALANTH_2104 PF00669 Bacterial flagellin N-terminal helical region ALANTH_2105 PF00700 Bacterial flagellin C-terminal helical region ALANTH_2105 PF00669 Bacterial flagellin N-terminal helical region ALANTH_2112 PF02348 Cytidylyltransferase ALANTH_2114 PF02222 ATP-grasp domain ALANTH_2116 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALANTH_2117 PF01209 ubiE/COQ5 methyltransferase family ALANTH_2119 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALANTH_2119 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALANTH_2119 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALANTH_2120 PF00535 Glycosyl transferase family 2 ALANTH_2120 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 ALANTH_2121 PF00535 Glycosyl transferase family 2 ALANTH_2121 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 ALANTH_2122 PF16363 GDP-mannose 4,6 dehydratase ALANTH_2123 PF03275 UDP-galactopyranose mutase ALANTH_2124 PF00535 Glycosyl transferase family 2 ALANTH_2124 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ALANTH_2125 PF13193 AMP-binding enzyme C-terminal domain ALANTH_2125 PF00501 AMP-binding enzyme ALANTH_2128 PF13302 Acetyltransferase (GNAT) domain ALANTH_2129 PF03102 NeuB family ALANTH_2129 PF08666 SAF domain ALANTH_2131 PF02348 Cytidylyltransferase ALANTH_2132 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALANTH_2133 PF02719 Polysaccharide biosynthesis protein ALANTH_2135 PF00154 recA bacterial DNA recombination protein ALANTH_2136 PF06968 Biotin and Thiamin Synthesis associated domain ALANTH_2136 PF04055 Radical SAM superfamily ALANTH_2138 PF01131 DNA topoisomerase ALANTH_2138 PF01751 Toprim domain ALANTH_2138 PF13368 Topoisomerase C-terminal repeat ALANTH_2140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ALANTH_2141 PF02621 Menaquinone biosynthesis ALANTH_2143 PF00004 ATPase family associated with various cellular activities (AAA) ALANTH_2143 PF17758 Proteasomal ATPase OB N-terminal domain ALANTH_2143 PF16450 Proteasomal ATPase OB C-terminal domain ALANTH_2146 PF00916 Sulfate permease family ALANTH_2146 PF01740 STAS domain ALANTH_2149 PF07690 Major Facilitator Superfamily ALANTH_2151 PF01261 Xylose isomerase-like TIM barrel ALANTH_2152 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALANTH_2153 PF00209 Sodium:neurotransmitter symporter family ALANTH_2155 PF02677 Epoxyqueuosine reductase QueH ALANTH_2156 PF02684 Lipid-A-disaccharide synthetase ALANTH_2157 PF07977 FabA-like domain ALANTH_2158 PF00132 Bacterial transferase hexapeptide (six repeats) ALANTH_2158 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ALANTH_2159 PF06689 ClpX C4-type zinc finger ALANTH_2159 PF10431 C-terminal, D2-small domain, of ClpB protein ALANTH_2159 PF07724 AAA domain (Cdc48 subfamily) ALANTH_2162 PF00677 Lumazine binding domain ALANTH_2164 PF01769 Divalent cation transporter ALANTH_2164 PF00571 CBS domain ALANTH_2164 PF03448 MgtE intracellular N domain ALANTH_2165 PF01134 Glucose inhibited division protein A ALANTH_2165 PF13932 GidA associated domain ALANTH_2168 PF03952 Enolase, N-terminal domain ALANTH_2168 PF00113 Enolase, C-terminal TIM barrel domain ALANTH_2175 PF01027 Inhibitor of apoptosis-promoting Bax1 ALANTH_2176 PF17792 ThiD2 family ALANTH_2176 PF02581 Thiamine monophosphate synthase ALANTH_2178 PF03840 Preprotein translocase SecG subunit ALANTH_2179 PF01765 Ribosome recycling factor ALANTH_2180 PF00156 Phosphoribosyl transferase domain ALANTH_2182 PF12832 MFS_1 like family ALANTH_2183 PF01544 CorA-like Mg2+ transporter protein ALANTH_2184 PF03883 Peroxide stress protein YaaA ALANTH_2185 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ALANTH_2185 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ALANTH_2186 PF01914 MarC family integral membrane protein ALANTH_2189 PF03167 Uracil DNA glycosylase superfamily ALANTH_2190 PF00171 Aldehyde dehydrogenase family ALANTH_2191 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALANTH_2191 PF00205 Thiamine pyrophosphate enzyme, central domain ALANTH_2191 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALANTH_2192 PF13419 Haloacid dehalogenase-like hydrolase ALANTH_2193 PF00210 Ferritin-like domain ALANTH_2194 PF07690 Major Facilitator Superfamily ALANTH_2195 PF02203 Tar ligand binding domain homologue ALANTH_2195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_2195 PF00672 HAMP domain ALANTH_2197 PF00529 HlyD membrane-fusion protein of T1SS ALANTH_2197 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALANTH_2198 PF00873 AcrB/AcrD/AcrF family ALANTH_2199 PF02321 Outer membrane efflux protein ALANTH_2203 PF01053 Cys/Met metabolism PLP-dependent enzyme ALANTH_2204 PF02082 Transcriptional regulator ALANTH_2205 PF00291 Pyridoxal-phosphate dependent enzyme ALANTH_2207 PF01507 Phosphoadenosine phosphosulfate reductase family ALANTH_2208 PF01507 Phosphoadenosine phosphosulfate reductase family ALANTH_2209 PF00009 Elongation factor Tu GTP binding domain ALANTH_2211 PF00291 Pyridoxal-phosphate dependent enzyme ALANTH_2214 PF00149 Calcineurin-like phosphoesterase ALANTH_2218 PF02630 SCO1/SenC ALANTH_2220 PF04314 Copper chaperone PCu(A)C ALANTH_2222 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALANTH_2222 PF02203 Tar ligand binding domain homologue ALANTH_2222 PF00672 HAMP domain ALANTH_2223 PF12857 TOBE-like domain ALANTH_2223 PF17850 CysA C-terminal regulatory domain ALANTH_2223 PF00005 ABC transporter ALANTH_2224 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_2225 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_2226 PF08495 FIST N domain ALANTH_2226 PF00990 Diguanylate cyclase, GGDEF domain ALANTH_2226 PF00563 EAL domain ALANTH_2226 PF10442 FIST C domain ALANTH_2227 PF00899 ThiF family ALANTH_2227 PF00581 Rhodanese-like domain ALANTH_2229 PF00132 Bacterial transferase hexapeptide (six repeats) ALANTH_2229 PF06426 Serine acetyltransferase, N-terminal ALANTH_2230 PF00266 Aminotransferase class-V ALANTH_2232 PF00581 Rhodanese-like domain ALANTH_2232 PF00899 ThiF family ALANTH_2233 PF02597 ThiS family ALANTH_2235 PF00291 Pyridoxal-phosphate dependent enzyme ALANTH_2238 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_2239 PF00005 ABC transporter ALANTH_2241 PF00296 Luciferase-like monooxygenase ALANTH_2242 PF09084 NMT1/THI5 like ALANTH_2244 PF00005 ABC transporter ALANTH_2245 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_2246 PF00296 Luciferase-like monooxygenase ALANTH_2247 PF09084 NMT1/THI5 like ALANTH_2248 PF00005 ABC transporter ALANTH_2249 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_2250 PF00528 Binding-protein-dependent transport system inner membrane component ALANTH_2251 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALANTH_2253 PF03144 Elongation factor Tu domain 2 ALANTH_2253 PF00679 Elongation factor G C-terminus ALANTH_2253 PF00009 Elongation factor Tu GTP binding domain ALANTH_2256 PF00593 TonB dependent receptor ALANTH_2256 PF07715 TonB-dependent Receptor Plug Domain ALANTH_2257 PF00593 TonB dependent receptor ALANTH_2257 PF07715 TonB-dependent Receptor Plug Domain ALANTH_2258 PF00005 ABC transporter ALANTH_2259 PF01032 FecCD transport family ALANTH_2260 PF01497 Periplasmic binding protein ALANTH_2261 PF01243 Pyridoxamine 5'-phosphate oxidase ALANTH_2263 PF00005 ABC transporter ALANTH_2263 PF00664 ABC transporter transmembrane region ALANTH_2265 PF04143 Sulphur transport ALANTH_2266 PF01206 Sulfurtransferase TusA ALANTH_2267 PF00593 TonB dependent receptor ALANTH_2267 PF07715 TonB-dependent Receptor Plug Domain ALANTH_2269 PF04542 Sigma-70 region 2 ALANTH_2269 PF08281 Sigma-70, region 4 ALANTH_2270 PF02511 Thymidylate synthase complementing protein ALANTH_2271 PF03458 UPF0126 domain ALANTH_2276 PF00551 Formyl transferase ALANTH_2276 PF02911 Formyl transferase, C-terminal domain ALANTH_2277 PF02075 Crossover junction endodeoxyribonuclease RuvC