locus-tag class description ATH_0001 PF00308 Bacterial dnaA protein ATH_0001 PF08299 Bacterial dnaA protein helix-turn-helix ATH_0001 PF11638 DnaA N-terminal domain ATH_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ATH_0002 PF02767 DNA polymerase III beta subunit, central domain ATH_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ATH_0003 PF00204 DNA gyrase B ATH_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ATH_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0003 PF01751 Toprim domain ATH_0008 PF13649 Methyltransferase domain ATH_0012 PF07715 TonB-dependent Receptor Plug Domain ATH_0012 PF07660 Secretin and TonB N terminus short domain ATH_0012 PF00593 TonB dependent receptor ATH_0013 PF00005 ABC transporter ATH_0014 PF01032 FecCD transport family ATH_0015 PF01497 Periplasmic binding protein ATH_0016 PF00296 Luciferase-like monooxygenase ATH_0018 PF00005 ABC transporter ATH_0018 PF08402 TOBE domain ATH_0019 PF00528 Binding-protein-dependent transport system inner membrane component ATH_0022 PF03459 TOBE domain ATH_0022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATH_0023 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATH_0023 PF03466 LysR substrate binding domain ATH_0025 PF00849 RNA pseudouridylate synthase ATH_0026 PF10397 Adenylosuccinate lyase C-terminus ATH_0026 PF00206 Lyase ATH_0027 PF03477 ATP cone domain ATH_0027 PF02867 Ribonucleotide reductase, barrel domain ATH_0027 PF00317 Ribonucleotide reductase, all-alpha domain ATH_0028 PF00268 Ribonucleotide reductase, small chain ATH_0031 PF00107 Zinc-binding dehydrogenase ATH_0031 PF08240 Alcohol dehydrogenase GroES-like domain ATH_0032 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ATH_0032 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATH_0033 PF02934 GatB/GatE catalytic domain ATH_0033 PF02637 GatB domain ATH_0035 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATH_0035 PF01872 RibD C-terminal domain ATH_0036 PF00364 Biotin-requiring enzyme ATH_0037 PF02785 Biotin carboxylase C-terminal domain ATH_0037 PF00289 Biotin carboxylase, N-terminal domain ATH_0037 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATH_0038 PF00270 DEAD/DEAH box helicase ATH_0038 PF00271 Helicase conserved C-terminal domain ATH_0039 PF01384 Phosphate transporter family ATH_0041 PF00733 Asparagine synthase ATH_0041 PF13537 Glutamine amidotransferase domain ATH_0043 PF02562 PhoH-like protein ATH_0043 PF13638 PIN domain ATH_0044 PF03653 Uncharacterised protein family (UPF0093) ATH_0045 PF16193 AAA C-terminal domain ATH_0045 PF01661 Macro domain ATH_0045 PF12002 MgsA AAA+ ATPase C terminal ATH_0045 PF05496 Holliday junction DNA helicase RuvB P-loop domain ATH_0046 PF01479 S4 domain ATH_0046 PF00849 RNA pseudouridylate synthase ATH_0047 PF00571 CBS domain ATH_0047 PF01380 SIS domain ATH_0048 PF00753 Metallo-beta-lactamase superfamily ATH_0048 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ATH_0048 PF17770 Ribonuclease J C-terminal domain ATH_0049 PF00398 Ribosomal RNA adenine dimethylase ATH_0050 PF00977 Histidine biosynthesis protein ATH_0053 PF04055 Radical SAM superfamily ATH_0054 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATH_0055 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ATH_0056 PF00486 Transcriptional regulatory protein, C terminal ATH_0056 PF00072 Response regulator receiver domain ATH_0057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0063 PF00873 AcrB/AcrD/AcrF family ATH_0065 PF04264 YceI-like domain ATH_0067 PF00857 Isochorismatase family ATH_0068 PF00742 Homoserine dehydrogenase ATH_0068 PF03447 Homoserine dehydrogenase, NAD binding domain ATH_0068 PF01842 ACT domain ATH_0069 PF00155 Aminotransferase class I and II ATH_0071 PF00588 SpoU rRNA Methylase family ATH_0071 PF08032 RNA 2'-O ribose methyltransferase substrate binding ATH_0072 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATH_0073 PF01197 Ribosomal protein L31 ATH_0076 PF01040 UbiA prenyltransferase family ATH_0078 PF12849 PBP superfamily domain ATH_0079 PF00563 EAL domain ATH_0079 PF12792 CSS motif domain associated with EAL ATH_0080 PF00528 Binding-protein-dependent transport system inner membrane component ATH_0081 PF00528 Binding-protein-dependent transport system inner membrane component ATH_0082 PF00005 ABC transporter ATH_0085 PF00486 Transcriptional regulatory protein, C terminal ATH_0085 PF00072 Response regulator receiver domain ATH_0086 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0086 PF00512 His Kinase A (phospho-acceptor) domain ATH_0086 PF08521 Two-component sensor kinase N-terminal ATH_0087 PF01165 Ribosomal protein S21 ATH_0088 PF01967 MoaC family ATH_0091 PF01975 Survival protein SurE ATH_0092 PF14579 Helix-hairpin-helix motif ATH_0092 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATH_0092 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATH_0092 PF02811 PHP domain ATH_0096 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ATH_0096 PF17768 RecJ OB domain ATH_0096 PF02272 DHHA1 domain ATH_0096 PF01368 DHH family ATH_0097 PF00117 Glutamine amidotransferase class-I ATH_0097 PF06418 CTP synthase N-terminus ATH_0098 PF12801 4Fe-4S binding domain ATH_0098 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ATH_0098 PF13746 4Fe-4S dicluster domain ATH_0100 PF01121 Dephospho-CoA kinase ATH_0101 PF00586 AIR synthase related protein, N-terminal domain ATH_0101 PF02769 AIR synthase related protein, C-terminal domain ATH_0102 PF00989 PAS fold ATH_0102 PF00512 His Kinase A (phospho-acceptor) domain ATH_0102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0103 PF00072 Response regulator receiver domain ATH_0103 PF00486 Transcriptional regulatory protein, C terminal ATH_0104 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATH_0106 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ATH_0106 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATH_0107 PF17954 Quercetinase C-terminal cupin domain ATH_0107 PF02678 Pirin ATH_0109 PF04264 YceI-like domain ATH_0110 PF01047 MarR family ATH_0111 PF00266 Aminotransferase class-V ATH_0112 PF13393 Histidyl-tRNA synthetase ATH_0113 PF00709 Adenylosuccinate synthetase ATH_0115 PF00117 Glutamine amidotransferase class-I ATH_0115 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ATH_0116 PF04608 Phosphatidylglycerophosphatase A ATH_0118 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ATH_0118 PF02542 YgbB family ATH_0120 PF01883 Iron-sulfur cluster assembly protein ATH_0120 PF10609 NUBPL iron-transfer P-loop NTPase ATH_0122 PF06339 Ectoine synthase ATH_0123 PF00202 Aminotransferase class-III ATH_0124 PF00583 Acetyltransferase (GNAT) family ATH_0127 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ATH_0127 PF01502 Phosphoribosyl-AMP cyclohydrolase ATH_0130 PF01063 Amino-transferase class IV ATH_0132 PF02574 Homocysteine S-methyltransferase ATH_0132 PF02310 B12 binding domain ATH_0132 PF02607 B12 binding domain ATH_0132 PF02965 Vitamin B12 dependent methionine synthase, activation domain ATH_0132 PF00809 Pterin binding enzyme ATH_0135 PF01266 FAD dependent oxidoreductase ATH_0135 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ATH_0136 PF02664 S-Ribosylhomocysteinase (LuxS) ATH_0139 PF02405 Permease MlaE ATH_0140 PF09383 NIL domain ATH_0140 PF00005 ABC transporter ATH_0144 PF13419 Haloacid dehalogenase-like hydrolase ATH_0145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATH_0147 PF01964 Radical SAM ThiC family ATH_0149 PF00899 ThiF family ATH_0150 PF05690 Thiazole biosynthesis protein ThiG ATH_0151 PF06968 Biotin and Thiamin Synthesis associated domain ATH_0151 PF04055 Radical SAM superfamily ATH_0152 PF17792 ThiD2 family ATH_0152 PF02581 Thiamine monophosphate synthase ATH_0153 PF08543 Phosphomethylpyrimidine kinase ATH_0153 PF02581 Thiamine monophosphate synthase ATH_0154 PF00380 Ribosomal protein S9/S16 ATH_0155 PF00572 Ribosomal protein L13 ATH_0156 PF03462 PCRF domain ATH_0156 PF00472 RF-1 domain ATH_0157 PF01649 Ribosomal protein S20 ATH_0158 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATH_0158 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATH_0158 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATH_0158 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATH_0159 PF01252 Signal peptidase (SPase) II ATH_0160 PF00330 Aconitase family (aconitate hydratase) ATH_0161 PF12804 MobA-like NTP transferase domain ATH_0165 PF00453 Ribosomal protein L20 ATH_0166 PF01632 Ribosomal protein L35 ATH_0167 PF05198 Translation initiation factor IF-3, N-terminal domain ATH_0167 PF00707 Translation initiation factor IF-3, C-terminal domain ATH_0168 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATH_0168 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATH_0168 PF03129 Anticodon binding domain ATH_0176 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ATH_0176 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ATH_0176 PF13288 DXP reductoisomerase C-terminal domain ATH_0179 PF00814 Glycoprotease family ATH_0192 PF00364 Biotin-requiring enzyme ATH_0194 PF02203 Tar ligand binding domain homologue ATH_0194 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0194 PF00672 HAMP domain ATH_0195 PF00456 Transketolase, thiamine diphosphate binding domain ATH_0195 PF02780 Transketolase, C-terminal domain ATH_0195 PF02779 Transketolase, pyrimidine binding domain ATH_0196 PF03788 LrgA family ATH_0197 PF04172 LrgB-like family ATH_0199 PF00501 AMP-binding enzyme ATH_0199 PF01553 Acyltransferase ATH_0200 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATH_0201 PF01022 Bacterial regulatory protein, arsR family ATH_0202 PF02040 Arsenical pump membrane protein ATH_0203 PF02417 Chromate transporter ATH_0205 PF00543 Nitrogen regulatory protein P-II ATH_0207 PF02154 Flagellar motor switch protein FliM ATH_0207 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATH_0208 PF02119 Flagellar P-ring protein ATH_0210 PF01313 Bacterial export proteins, family 3 ATH_0215 PF02107 Flagellar L-ring protein ATH_0218 PF02561 Flagellar protein FliS ATH_0220 PF01171 PP-loop family ATH_0221 PF04055 Radical SAM superfamily ATH_0221 PF18693 TRAM domain ATH_0221 PF00919 Uncharacterized protein family UPF0004 ATH_0223 PF02569 Pantoate-beta-alanine ligase ATH_0224 PF00528 Binding-protein-dependent transport system inner membrane component ATH_0225 PF01648 4'-phosphopantetheinyl transferase superfamily ATH_0227 PF03616 Sodium/glutamate symporter ATH_0228 PF03652 Holliday junction resolvase ATH_0229 PF02574 Homocysteine S-methyltransferase ATH_0229 PF02219 Methylenetetrahydrofolate reductase ATH_0231 PF00923 Transaldolase/Fructose-6-phosphate aldolase ATH_0232 PF01474 Class-II DAHP synthetase family ATH_0233 PF03960 ArsC family ATH_0234 PF02686 Glu-tRNAGln amidotransferase C subunit ATH_0235 PF01702 Queuine tRNA-ribosyltransferase ATH_0237 PF08245 Mur ligase middle domain ATH_0237 PF02875 Mur ligase family, glutamate ligase domain ATH_0237 PF01225 Mur ligase family, catalytic domain ATH_0238 PF03466 LysR substrate binding domain ATH_0238 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATH_0239 PF13361 UvrD-like helicase C-terminal domain ATH_0239 PF00580 UvrD/REP helicase N-terminal domain ATH_0240 PF01509 TruB family pseudouridylate synthase (N terminal domain) ATH_0241 PF00288 GHMP kinases N terminal domain ATH_0242 PF01668 SmpB protein ATH_0243 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATH_0246 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATH_0246 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ATH_0251 PF01569 PAP2 superfamily ATH_0255 PF03462 PCRF domain ATH_0255 PF00472 RF-1 domain ATH_0258 PF02660 Glycerol-3-phosphate acyltransferase ATH_0259 PF02445 Quinolinate synthetase A protein ATH_0260 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ATH_0260 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ATH_0261 PF02272 DHHA1 domain ATH_0261 PF01368 DHH family ATH_0263 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ATH_0265 PF00288 GHMP kinases N terminal domain ATH_0265 PF08544 GHMP kinases C terminal ATH_0267 PF04760 Translation initiation factor IF-2, N-terminal region ATH_0267 PF11987 Translation-initiation factor 2 ATH_0267 PF00009 Elongation factor Tu GTP binding domain ATH_0268 PF02033 Ribosome-binding factor A ATH_0269 PF02576 RimP N-terminal domain ATH_0270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATH_0270 PF01872 RibD C-terminal domain ATH_0271 PF01132 Elongation factor P (EF-P) OB domain ATH_0271 PF09285 Elongation factor P, C-terminal ATH_0271 PF08207 Elongation factor P (EF-P) KOW-like domain ATH_0272 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATH_0272 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATH_0272 PF01842 ACT domain ATH_0273 PF00575 S1 RNA binding domain ATH_0274 PF02401 LytB protein ATH_0275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATH_0276 PF03484 tRNA synthetase B5 domain ATH_0276 PF03147 Ferredoxin-fold anticodon binding domain ATH_0276 PF01588 Putative tRNA binding domain ATH_0276 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ATH_0277 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ATH_0277 PF01409 tRNA synthetases class II core domain (F) ATH_0278 PF01230 HIT domain ATH_0280 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ATH_0281 PF02801 Beta-ketoacyl synthase, C-terminal domain ATH_0281 PF00109 Beta-ketoacyl synthase, N-terminal domain ATH_0282 PF00550 Phosphopantetheine attachment site ATH_0286 PF04452 RNA methyltransferase ATH_0288 PF00033 Cytochrome b/b6/petB ATH_0288 PF00032 Cytochrome b(C-terminal)/b6/petD ATH_0289 PF00355 Rieske [2Fe-2S] domain ATH_0290 PF00291 Pyridoxal-phosphate dependent enzyme ATH_0291 PF00696 Amino acid kinase family ATH_0292 PF00580 UvrD/REP helicase N-terminal domain ATH_0292 PF13361 UvrD-like helicase C-terminal domain ATH_0293 PF00119 ATP synthase A chain ATH_0294 PF13291 ACT domain ATH_0294 PF00291 Pyridoxal-phosphate dependent enzyme ATH_0295 PF08267 Cobalamin-independent synthase, N-terminal domain ATH_0295 PF01717 Cobalamin-independent synthase, Catalytic domain ATH_0297 PF01746 tRNA (Guanine-1)-methyltransferase ATH_0298 PF01245 Ribosomal protein L19 ATH_0299 PF09335 SNARE associated Golgi protein ATH_0301 PF00155 Aminotransferase class I and II ATH_0303 PF01042 Endoribonuclease L-PSP ATH_0307 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ATH_0307 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ATH_0311 PF07715 TonB-dependent Receptor Plug Domain ATH_0311 PF00593 TonB dependent receptor ATH_0313 PF00005 ABC transporter ATH_0314 PF00528 Binding-protein-dependent transport system inner membrane component ATH_0315 PF13416 Bacterial extracellular solute-binding protein ATH_0316 PF00117 Glutamine amidotransferase class-I ATH_0319 PF00528 Binding-protein-dependent transport system inner membrane component ATH_0320 PF00005 ABC transporter ATH_0323 PF00593 TonB dependent receptor ATH_0323 PF07715 TonB-dependent Receptor Plug Domain ATH_0326 PF00164 Ribosomal protein S12/S23 ATH_0327 PF00177 Ribosomal protein S7p/S5e ATH_0328 PF14492 Elongation Factor G, domain II ATH_0328 PF03764 Elongation factor G, domain IV ATH_0328 PF00009 Elongation factor Tu GTP binding domain ATH_0328 PF03144 Elongation factor Tu domain 2 ATH_0328 PF00679 Elongation factor G C-terminus ATH_0329 PF01513 ATP-NAD kinase ATH_0330 PF13476 AAA domain ATH_0331 PF17200 Single Cache domain 2 ATH_0331 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0331 PF00672 HAMP domain ATH_0332 PF01136 Peptidase family U32 ATH_0334 PF00731 AIR carboxylase ATH_0336 PF02091 Glycyl-tRNA synthetase alpha subunit ATH_0337 PF01784 NIF3 (NGG1p interacting factor 3) ATH_0339 PF02390 Putative methyltransferase ATH_0339 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ATH_0340 PF00849 RNA pseudouridylate synthase ATH_0341 PF02978 Signal peptide binding domain ATH_0341 PF02881 SRP54-type protein, helical bundle domain ATH_0341 PF00448 SRP54-type protein, GTPase domain ATH_0342 PF00886 Ribosomal protein S16 ATH_0344 PF01782 RimM N-terminal domain ATH_0347 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATH_0347 PF00460 Flagella basal body rod protein ATH_0348 PF00072 Response regulator receiver domain ATH_0350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATH_0350 PF00460 Flagella basal body rod protein ATH_0351 PF00460 Flagella basal body rod protein ATH_0352 PF01514 Secretory protein of YscJ/FliF family ATH_0352 PF08345 Flagellar M-ring protein C-terminal ATH_0353 PF01706 FliG C-terminal domain ATH_0353 PF14841 FliG middle domain ATH_0353 PF14842 FliG N-terminal domain ATH_0355 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATH_0357 PF00460 Flagella basal body rod protein ATH_0357 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATH_0357 PF07196 Flagellin hook IN motif ATH_0357 PF07559 Flagellar basal body protein FlaE ATH_0358 PF00460 Flagella basal body rod protein ATH_0358 PF07196 Flagellin hook IN motif ATH_0361 PF16973 Flagellar motor switch protein FliN N-terminal ATH_0361 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATH_0365 PF00448 SRP54-type protein, GTPase domain ATH_0366 PF10609 NUBPL iron-transfer P-loop NTPase ATH_0368 PF02049 Flagellar hook-basal body complex protein FliE ATH_0369 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATH_0369 PF00460 Flagella basal body rod protein ATH_0372 PF01312 FlhB HrpN YscU SpaS Family ATH_0374 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATH_0374 PF18269 T3SS EscN ATPase C-terminal domain ATH_0376 PF00771 FHIPEP family ATH_0378 PF01613 Flavin reductase like domain ATH_0381 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATH_0382 PF00557 Metallopeptidase family M24 ATH_0382 PF01321 Creatinase/Prolidase N-terminal domain ATH_0383 PF01220 Dehydroquinase class II ATH_0384 PF01979 Amidohydrolase family ATH_0385 PF01343 Peptidase family S49 ATH_0386 PF00871 Acetokinase family ATH_0387 PF01515 Phosphate acetyl/butaryl transferase ATH_0388 PF00871 Acetokinase family ATH_0389 PF00929 Exonuclease ATH_0391 PF00474 Sodium:solute symporter family ATH_0393 PF00474 Sodium:solute symporter family ATH_0397 PF00474 Sodium:solute symporter family ATH_0398 PF00072 Response regulator receiver domain ATH_0398 PF00486 Transcriptional regulatory protein, C terminal ATH_0399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0399 PF00512 His Kinase A (phospho-acceptor) domain ATH_0408 PF02464 Competence-damaged protein ATH_0408 PF00994 Probable molybdopterin binding domain ATH_0408 PF18146 Damage-inducible protein CinA KH domain ATH_0409 PF06039 Malate:quinone oxidoreductase (Mqo) ATH_0410 PF08264 Anticodon-binding domain of tRNA ATH_0410 PF00133 tRNA synthetases class I (I, L, M and V) ATH_0413 PF02875 Mur ligase family, glutamate ligase domain ATH_0413 PF08245 Mur ligase middle domain ATH_0414 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0414 PF08447 PAS fold ATH_0415 PF00672 HAMP domain ATH_0415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0415 PF02203 Tar ligand binding domain homologue ATH_0416 PF00318 Ribosomal protein S2 ATH_0417 PF00889 Elongation factor TS ATH_0418 PF00005 ABC transporter ATH_0420 PF00625 Guanylate kinase ATH_0421 PF00072 Response regulator receiver domain ATH_0421 PF12833 Helix-turn-helix domain ATH_0422 PF00403 Heavy-metal-associated domain ATH_0425 PF00005 ABC transporter ATH_0426 PF00762 Ferrochelatase ATH_0428 PF00459 Inositol monophosphatase family ATH_0429 PF01380 SIS domain ATH_0430 PF02773 S-adenosylmethionine synthetase, C-terminal domain ATH_0430 PF02772 S-adenosylmethionine synthetase, central domain ATH_0430 PF00438 S-adenosylmethionine synthetase, N-terminal domain ATH_0431 PF17848 Acetyl-coA carboxylase zinc finger domain ATH_0431 PF01039 Carboxyl transferase domain ATH_0432 PF02581 Thiamine monophosphate synthase ATH_0433 PF02590 Predicted SPOUT methyltransferase ATH_0435 PF01207 Dihydrouridine synthase (Dus) ATH_0437 PF00004 ATPase family associated with various cellular activities (AAA) ATH_0437 PF17862 AAA+ lid domain ATH_0437 PF01434 Peptidase family M41 ATH_0438 PF00682 HMGL-like ATH_0438 PF08502 LeuA allosteric (dimerisation) domain ATH_0442 PF10414 Sirohaem synthase dimerisation region ATH_0442 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATH_0445 PF00977 Histidine biosynthesis protein ATH_0446 PF00117 Glutamine amidotransferase class-I ATH_0448 PF00156 Phosphoribosyl transferase domain ATH_0455 PF00679 Elongation factor G C-terminus ATH_0455 PF00009 Elongation factor Tu GTP binding domain ATH_0455 PF03144 Elongation factor Tu domain 2 ATH_0455 PF06421 GTP-binding protein LepA C-terminus ATH_0457 PF00403 Heavy-metal-associated domain ATH_0458 PF14572 Phosphoribosyl synthetase-associated domain ATH_0458 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ATH_0463 PF01575 MaoC like domain ATH_0464 PF13193 AMP-binding enzyme C-terminal domain ATH_0464 PF00501 AMP-binding enzyme ATH_0467 PF02617 ATP-dependent Clp protease adaptor protein ClpS ATH_0468 PF07724 AAA domain (Cdc48 subfamily) ATH_0468 PF10431 C-terminal, D2-small domain, of ClpB protein ATH_0468 PF00004 ATPase family associated with various cellular activities (AAA) ATH_0468 PF02861 Clp amino terminal domain, pathogenicity island component ATH_0468 PF17871 AAA lid domain ATH_0476 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ATH_0477 PF03717 Penicillin-binding Protein dimerisation domain ATH_0477 PF00905 Penicillin binding protein transpeptidase domain ATH_0478 PF01098 Cell cycle protein ATH_0479 PF03033 Glycosyltransferase family 28 N-terminal domain ATH_0479 PF04101 Glycosyltransferase family 28 C-terminal domain ATH_0483 PF01966 HD domain ATH_0491 PF02673 Bacitracin resistance protein BacA ATH_0492 PF02621 Menaquinone biosynthesis ATH_0494 PF02391 MoaE protein ATH_0496 PF00120 Glutamine synthetase, catalytic domain ATH_0496 PF03951 Glutamine synthetase, beta-Grasp domain ATH_0501 PF08264 Anticodon-binding domain of tRNA ATH_0501 PF00133 tRNA synthetases class I (I, L, M and V) ATH_0501 PF10458 Valyl tRNA synthetase tRNA binding arm ATH_0502 PF07690 Major Facilitator Superfamily ATH_0503 PF01725 Ham1 family ATH_0507 PF14748 Pyrroline-5-carboxylate reductase dimerisation ATH_0507 PF03807 NADP oxidoreductase coenzyme F420-dependent ATH_0508 PF13525 Outer membrane lipoprotein ATH_0509 PF00004 ATPase family associated with various cellular activities (AAA) ATH_0509 PF05362 Lon protease (S16) C-terminal proteolytic domain ATH_0509 PF02190 ATP-dependent protease La (LON) substrate-binding domain ATH_0511 PF01351 Ribonuclease HII ATH_0512 PF00005 ABC transporter ATH_0512 PF02687 FtsX-like permease family ATH_0512 PF12704 MacB-like periplasmic core domain ATH_0513 PF00005 ABC transporter ATH_0513 PF02687 FtsX-like permease family ATH_0513 PF12704 MacB-like periplasmic core domain ATH_0516 PF01618 MotA/TolQ/ExbB proton channel family ATH_0517 PF02472 Biopolymer transport protein ExbD/TolR ATH_0518 PF03544 Gram-negative bacterial TonB protein C-terminal ATH_0520 PF02785 Biotin carboxylase C-terminal domain ATH_0520 PF00289 Biotin carboxylase, N-terminal domain ATH_0520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATH_0521 PF05538 Campylobacter major outer membrane protein ATH_0523 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ ATH_0525 PF00004 ATPase family associated with various cellular activities (AAA) ATH_0525 PF07724 AAA domain (Cdc48 subfamily) ATH_0525 PF17871 AAA lid domain ATH_0525 PF02861 Clp amino terminal domain, pathogenicity island component ATH_0525 PF10431 C-terminal, D2-small domain, of ClpB protein ATH_0526 PF00468 Ribosomal protein L34 ATH_0527 PF00825 Ribonuclease P ATH_0528 PF01809 Putative membrane protein insertion efficiency factor ATH_0529 PF02096 60Kd inner membrane protein ATH_0529 PF14849 YidC periplasmic domain ATH_0531 PF01926 50S ribosome-binding GTPase ATH_0531 PF12631 MnmE helical domain ATH_0531 PF10396 GTP-binding protein TrmE N-terminus ATH_0532 PF00300 Histidine phosphatase superfamily (branch 1) ATH_0533 PF07694 5TMR of 5TMR-LYT ATH_0533 PF00990 Diguanylate cyclase, GGDEF domain ATH_0534 PF01435 Peptidase family M48 ATH_0536 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ATH_0537 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ATH_0538 PF04715 Anthranilate synthase component I, N terminal region ATH_0538 PF00425 chorismate binding enzyme ATH_0540 PF00464 Serine hydroxymethyltransferase ATH_0541 PF00152 tRNA synthetases class II (D, K and N) ATH_0541 PF01336 OB-fold nucleic acid binding domain ATH_0543 PF04551 GcpE protein ATH_0544 PF00772 DnaB-like helicase N terminal domain ATH_0544 PF03796 DnaB-like helicase C terminal domain ATH_0545 PF07963 Prokaryotic N-terminal methylation motif ATH_0545 PF08334 Type II secretion system (T2SS), protein G ATH_0546 PF00593 TonB dependent receptor ATH_0546 PF07715 TonB-dependent Receptor Plug Domain ATH_0547 PF00593 TonB dependent receptor ATH_0547 PF07715 TonB-dependent Receptor Plug Domain ATH_0548 PF13847 Methyltransferase domain ATH_0552 PF02554 Carbon starvation protein CstA ATH_0552 PF13722 5TM C-terminal transporter carbon starvation CstA ATH_0553 PF01926 50S ribosome-binding GTPase ATH_0553 PF06071 Protein of unknown function (DUF933) ATH_0557 PF06865 Pyrimidine/purine nucleoside phosphorylase ATH_0558 PF02769 AIR synthase related protein, C-terminal domain ATH_0558 PF00586 AIR synthase related protein, N-terminal domain ATH_0559 PF01142 tRNA pseudouridine synthase D (TruD) ATH_0561 PF12729 Four helix bundle sensory module for signal transduction ATH_0561 PF00672 HAMP domain ATH_0561 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0562 PF01330 RuvA N terminal domain ATH_0562 PF07499 RuvA, C-terminal domain ATH_0563 PF01820 D-ala D-ala ligase N-terminus ATH_0563 PF07478 D-ala D-ala ligase C-terminus ATH_0565 PF02875 Mur ligase family, glutamate ligase domain ATH_0565 PF08245 Mur ligase middle domain ATH_0566 PF01230 HIT domain ATH_0569 PF00873 AcrB/AcrD/AcrF family ATH_0570 PF00529 HlyD membrane-fusion protein of T1SS ATH_0570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATH_0573 PF02348 Cytidylyltransferase ATH_0574 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ATH_0574 PF01367 5'-3' exonuclease, C-terminal SAM fold ATH_0574 PF00476 DNA polymerase family A ATH_0578 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATH_0579 PF08534 Redoxin ATH_0579 PF01625 Peptide methionine sulfoxide reductase ATH_0579 PF01641 SelR domain ATH_0582 PF00132 Bacterial transferase hexapeptide (six repeats) ATH_0582 PF06426 Serine acetyltransferase, N-terminal ATH_0583 PF17810 Arginine decarboxylase helical bundle domain ATH_0583 PF17944 Arginine decarboxylase C-terminal helical extension ATH_0583 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATH_0584 PF03129 Anticodon binding domain ATH_0584 PF13393 Histidyl-tRNA synthetase ATH_0585 PF02223 Thymidylate kinase ATH_0588 PF01467 Cytidylyltransferase-like ATH_0589 PF02441 Flavoprotein ATH_0591 PF03948 Ribosomal protein L9, C-terminal domain ATH_0591 PF01281 Ribosomal protein L9, N-terminal domain ATH_0592 PF00227 Proteasome subunit ATH_0593 PF07724 AAA domain (Cdc48 subfamily) ATH_0593 PF10431 C-terminal, D2-small domain, of ClpB protein ATH_0595 PF01026 TatD related DNase ATH_0596 PF05036 Sporulation related domain ATH_0596 PF03330 Lytic transglycolase ATH_0597 PF00475 Imidazoleglycerol-phosphate dehydratase ATH_0601 PF01926 50S ribosome-binding GTPase ATH_0602 PF00583 Acetyltransferase (GNAT) family ATH_0604 PF00338 Ribosomal protein S10p/S20e ATH_0605 PF00297 Ribosomal protein L3 ATH_0606 PF00573 Ribosomal protein L4/L1 family ATH_0607 PF00276 Ribosomal protein L23 ATH_0608 PF00181 Ribosomal Proteins L2, RNA binding domain ATH_0608 PF03947 Ribosomal Proteins L2, C-terminal domain ATH_0609 PF00203 Ribosomal protein S19 ATH_0610 PF00237 Ribosomal protein L22p/L17e ATH_0611 PF07650 KH domain ATH_0611 PF00189 Ribosomal protein S3, C-terminal domain ATH_0612 PF00252 Ribosomal protein L16p/L10e ATH_0613 PF00831 Ribosomal L29 protein ATH_0614 PF00366 Ribosomal protein S17 ATH_0615 PF00238 Ribosomal protein L14p/L23e ATH_0616 PF00467 KOW motif ATH_0616 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ATH_0617 PF00281 Ribosomal protein L5 ATH_0617 PF00673 ribosomal L5P family C-terminus ATH_0618 PF00253 Ribosomal protein S14p/S29e ATH_0619 PF00410 Ribosomal protein S8 ATH_0620 PF00347 Ribosomal protein L6 ATH_0621 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ATH_0622 PF00333 Ribosomal protein S5, N-terminal domain ATH_0622 PF03719 Ribosomal protein S5, C-terminal domain ATH_0623 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ATH_0624 PF00344 SecY translocase ATH_0625 PF00557 Metallopeptidase family M24 ATH_0626 PF01176 Translation initiation factor 1A / IF-1 ATH_0629 PF01336 OB-fold nucleic acid binding domain ATH_0629 PF02938 GAD domain ATH_0629 PF00152 tRNA synthetases class II (D, K and N) ATH_0630 PF04055 Radical SAM superfamily ATH_0630 PF08497 Radical SAM N-terminal ATH_0631 PF05191 Adenylate kinase, active site lid ATH_0636 PF00302 Chloramphenicol acetyltransferase ATH_0637 PF00155 Aminotransferase class I and II ATH_0638 PF12729 Four helix bundle sensory module for signal transduction ATH_0638 PF00672 HAMP domain ATH_0638 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0639 PF00842 Alanine racemase, C-terminal domain ATH_0639 PF01168 Alanine racemase, N-terminal domain ATH_0640 PF01541 GIY-YIG catalytic domain ATH_0640 PF08459 UvrC Helix-hairpin-helix N-terminal ATH_0640 PF02151 UvrB/uvrC motif ATH_0641 PF02203 Tar ligand binding domain homologue ATH_0641 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0641 PF00672 HAMP domain ATH_0642 PF00199 Catalase ATH_0642 PF06628 Catalase-related immune-responsive ATH_0643 PF00023 Ankyrin repeat ATH_0643 PF12796 Ankyrin repeats (3 copies) ATH_0644 PF00873 AcrB/AcrD/AcrF family ATH_0645 PF00873 AcrB/AcrD/AcrF family ATH_0646 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATH_0648 PF11849 Domain of unknown function (DUF3369) ATH_0649 PF00813 FliP family ATH_0650 PF03717 Penicillin-binding Protein dimerisation domain ATH_0650 PF00905 Penicillin binding protein transpeptidase domain ATH_0654 PF00005 ABC transporter ATH_0654 PF09383 NIL domain ATH_0655 PF02390 Putative methyltransferase ATH_0657 PF00849 RNA pseudouridylate synthase ATH_0657 PF01479 S4 domain ATH_0658 PF01098 Cell cycle protein ATH_0661 PF03591 AzlC protein ATH_0663 PF00202 Aminotransferase class-III ATH_0664 PF06865 Pyrimidine/purine nucleoside phosphorylase ATH_0667 PF00672 HAMP domain ATH_0667 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0667 PF02203 Tar ligand binding domain homologue ATH_0668 PF04542 Sigma-70 region 2 ATH_0668 PF04539 Sigma-70 region 3 ATH_0668 PF00140 Sigma-70 factor, region 1.2 ATH_0668 PF04545 Sigma-70, region 4 ATH_0669 PF00694 Aconitase C-terminal domain ATH_0670 PF00180 Isocitrate/isopropylmalate dehydrogenase ATH_0673 PF00444 Ribosomal protein L36 ATH_0674 PF00416 Ribosomal protein S13/S18 ATH_0675 PF00411 Ribosomal protein S11 ATH_0676 PF01479 S4 domain ATH_0676 PF00163 Ribosomal protein S4/S9 N-terminal domain ATH_0677 PF01000 RNA polymerase Rpb3/RpoA insert domain ATH_0677 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ATH_0677 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ATH_0678 PF01196 Ribosomal protein L17 ATH_0679 PF01425 Amidase ATH_0680 PF00571 CBS domain ATH_0680 PF00478 IMP dehydrogenase / GMP reductase domain ATH_0681 PF00672 HAMP domain ATH_0681 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0681 PF02203 Tar ligand binding domain homologue ATH_0682 PF02646 RmuC family ATH_0684 PF00226 DnaJ domain ATH_0684 PF01556 DnaJ C terminal domain ATH_0684 PF00684 DnaJ central domain ATH_0686 PF00933 Glycosyl hydrolase family 3 N terminal domain ATH_0687 PF01022 Bacterial regulatory protein, arsR family ATH_0688 PF00403 Heavy-metal-associated domain ATH_0689 PF16916 Dimerisation domain of Zinc Transporter ATH_0689 PF01545 Cation efflux family ATH_0691 PF03062 MBOAT, membrane-bound O-acyltransferase family ATH_0695 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATH_0695 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATH_0696 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATH_0696 PF00364 Biotin-requiring enzyme ATH_0696 PF02817 e3 binding domain ATH_0697 PF17831 Pyruvate dehydrogenase E1 component middle domain ATH_0697 PF00456 Transketolase, thiamine diphosphate binding domain ATH_0698 PF03099 Biotin/lipoate A/B protein ligase family ATH_0698 PF10437 Bacterial lipoate protein ligase C-terminus ATH_0699 PF04055 Radical SAM superfamily ATH_0700 PF18381 YcaO cyclodehydratase C-terminal domain ATH_0700 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ATH_0701 PF03473 MOSC domain ATH_0701 PF03475 3-alpha domain ATH_0702 PF00202 Aminotransferase class-III ATH_0703 PF00155 Aminotransferase class I and II ATH_0703 PF00392 Bacterial regulatory proteins, gntR family ATH_0704 PF01243 Pyridoxamine 5'-phosphate oxidase ATH_0705 PF03594 Benzoate membrane transport protein ATH_0708 PF02805 Metal binding domain of Ada ATH_0708 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ATH_0708 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ATH_0708 PF12833 Helix-turn-helix domain ATH_0709 PF00464 Serine hydroxymethyltransferase ATH_0712 PF00571 CBS domain ATH_0712 PF03471 Transporter associated domain ATH_0714 PF01883 Iron-sulfur cluster assembly protein ATH_0715 PF02657 Fe-S metabolism associated domain ATH_0716 PF00266 Aminotransferase class-V ATH_0718 PF00005 ABC transporter ATH_0719 PF01458 Uncharacterized protein family (UPF0051) ATH_0720 PF01106 NifU-like domain ATH_0720 PF01592 NifU-like N terminal domain ATH_0720 PF04324 BFD-like [2Fe-2S] binding domain ATH_0722 PF00990 Diguanylate cyclase, GGDEF domain ATH_0723 PF14698 Argininosuccinate lyase C-terminal ATH_0723 PF00206 Lyase ATH_0724 PF00072 Response regulator receiver domain ATH_0724 PF01584 CheW-like domain ATH_0725 PF00899 ThiF family ATH_0726 PF03449 Transcription elongation factor, N-terminal ATH_0726 PF01272 Transcription elongation factor, GreA/GreB, C-term ATH_0728 PF00271 Helicase conserved C-terminal domain ATH_0728 PF04851 Type III restriction enzyme, res subunit ATH_0728 PF02151 UvrB/uvrC motif ATH_0728 PF12344 Ultra-violet resistance protein B ATH_0728 PF17757 UvrB interaction domain ATH_0729 PF11849 Domain of unknown function (DUF3369) ATH_0730 PF00360 Phytochrome region ATH_0730 PF00990 Diguanylate cyclase, GGDEF domain ATH_0730 PF00563 EAL domain ATH_0730 PF01590 GAF domain ATH_0731 PF09308 LuxQ, periplasmic ATH_0731 PF00512 His Kinase A (phospho-acceptor) domain ATH_0731 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0731 PF00072 Response regulator receiver domain ATH_0732 PF00730 HhH-GPD superfamily base excision DNA repair protein ATH_0732 PF10576 Iron-sulfur binding domain of endonuclease III ATH_0732 PF00633 Helix-hairpin-helix motif ATH_0736 PF02502 Ribose/Galactose Isomerase ATH_0737 PF10502 Signal peptidase, peptidase S26 ATH_0738 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ATH_0738 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ATH_0739 PF01386 Ribosomal L25p family ATH_0739 PF14693 Ribosomal protein TL5, C-terminal domain ATH_0740 PF01195 Peptidyl-tRNA hydrolase ATH_0743 PF01520 N-acetylmuramoyl-L-alanine amidase ATH_0745 PF00579 tRNA synthetases class I (W and Y) ATH_0745 PF01479 S4 domain ATH_0746 PF13291 ACT domain ATH_0746 PF02824 TGS domain ATH_0746 PF04607 Region found in RelA / SpoT proteins ATH_0747 PF01192 RNA polymerase Rpb6 ATH_0748 PF00696 Amino acid kinase family ATH_0757 PF06965 Na+/H+ antiporter 1 ATH_0760 PF03824 High-affinity nickel-transport protein ATH_0763 PF17755 UvrA DNA-binding domain ATH_0763 PF17760 UvrA interaction domain ATH_0764 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0764 PF00672 HAMP domain ATH_0764 PF02203 Tar ligand binding domain homologue ATH_0765 PF08447 PAS fold ATH_0765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_0770 PF01053 Cys/Met metabolism PLP-dependent enzyme ATH_0771 PF01053 Cys/Met metabolism PLP-dependent enzyme ATH_0772 PF01068 ATP dependent DNA ligase domain ATH_0772 PF14743 DNA ligase OB-like domain ATH_0773 PF00156 Phosphoribosyl transferase domain ATH_0774 PF00291 Pyridoxal-phosphate dependent enzyme ATH_0776 PF00883 Cytosol aminopeptidase family, catalytic domain ATH_0776 PF02789 Cytosol aminopeptidase family, N-terminal domain ATH_0777 PF03466 LysR substrate binding domain ATH_0777 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATH_0778 PF01361 Tautomerase enzyme ATH_0780 PF04225 Opacity-associated protein A LysM-like domain ATH_0780 PF01551 Peptidase family M23 ATH_0782 PF00005 ABC transporter ATH_0782 PF16326 ABC transporter C-terminal domain ATH_0782 PF12848 ABC transporter ATH_0785 PF05860 haemagglutination activity domain ATH_0790 PF00682 HMGL-like ATH_0791 PF00075 RNase H ATH_0794 PF00664 ABC transporter transmembrane region ATH_0794 PF00005 ABC transporter ATH_0796 PF00561 alpha/beta hydrolase fold ATH_0799 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ATH_0801 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ATH_0803 PF00117 Glutamine amidotransferase class-I ATH_0803 PF00958 GMP synthase C terminal domain ATH_0803 PF02540 NAD synthase ATH_0804 PF00890 FAD binding domain ATH_0805 PF01863 Protein of unknown function DUF45 ATH_0806 PF00155 Aminotransferase class I and II ATH_0808 PF10672 S-adenosylmethionine-dependent methyltransferase ATH_0808 PF17785 PUA-like domain ATH_0809 PF00999 Sodium/hydrogen exchanger family ATH_0809 PF02254 TrkA-N domain ATH_0811 PF02600 Disulfide bond formation protein DsbB ATH_0814 PF02769 AIR synthase related protein, C-terminal domain ATH_0814 PF00586 AIR synthase related protein, N-terminal domain ATH_0815 PF01841 Transglutaminase-like superfamily ATH_0822 PF02954 Bacterial regulatory protein, Fis family ATH_0822 PF00072 Response regulator receiver domain ATH_0822 PF00158 Sigma-54 interaction domain ATH_0823 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0823 PF00512 His Kinase A (phospho-acceptor) domain ATH_0829 PF13247 4Fe-4S dicluster domain ATH_0831 PF02634 FdhD/NarQ family ATH_0833 PF00994 Probable molybdopterin binding domain ATH_0833 PF03454 MoeA C-terminal region (domain IV) ATH_0833 PF03453 MoeA N-terminal region (domain I and II) ATH_0835 PF03480 Bacterial extracellular solute-binding protein, family 7 ATH_0836 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ATH_0837 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ATH_0838 PF00989 PAS fold ATH_0838 PF00512 His Kinase A (phospho-acceptor) domain ATH_0838 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0839 PF00072 Response regulator receiver domain ATH_0840 PF10518 TAT (twin-arginine translocation) pathway signal sequence ATH_0840 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATH_0840 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ATH_0851 PF00145 C-5 cytosine-specific DNA methylase ATH_0859 PF00589 Phage integrase family ATH_0859 PF14659 Phage integrase, N-terminal SAM-like domain ATH_0860 PF03061 Thioesterase superfamily ATH_0861 PF13091 PLD-like domain ATH_0861 PF13396 Phospholipase_D-nuclease N-terminal ATH_0862 PF01435 Peptidase family M48 ATH_0862 PF16491 CAAX prenyl protease N-terminal, five membrane helices ATH_0864 PF00994 Probable molybdopterin binding domain ATH_0864 PF03454 MoeA C-terminal region (domain IV) ATH_0864 PF03453 MoeA N-terminal region (domain I and II) ATH_0866 PF01171 PP-loop family ATH_0868 PF18364 Molybdopterin oxidoreductase N-terminal domain ATH_0868 PF01568 Molydopterin dinucleotide binding domain ATH_0868 PF00384 Molybdopterin oxidoreductase ATH_0870 PF00486 Transcriptional regulatory protein, C terminal ATH_0870 PF00072 Response regulator receiver domain ATH_0872 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0872 PF08448 PAS fold ATH_0872 PF08447 PAS fold ATH_0877 PF02541 Ppx/GppA phosphatase family ATH_0879 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATH_0879 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATH_0879 PF00205 Thiamine pyrophosphate enzyme, central domain ATH_0880 PF10369 Small subunit of acetolactate synthase ATH_0881 PF00132 Bacterial transferase hexapeptide (six repeats) ATH_0881 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ATH_0882 PF17854 FtsK alpha domain ATH_0882 PF09397 Ftsk gamma domain ATH_0882 PF01580 FtsK/SpoIIIE family ATH_0883 PF07669 Eco57I restriction-modification methylase ATH_0889 PF01761 3-dehydroquinate synthase ATH_0891 PF04055 Radical SAM superfamily ATH_0891 PF00919 Uncharacterized protein family UPF0004 ATH_0892 PF01434 Peptidase family M41 ATH_0892 PF06480 FtsH Extracellular ATH_0892 PF17862 AAA+ lid domain ATH_0892 PF00004 ATPase family associated with various cellular activities (AAA) ATH_0894 PF00994 Probable molybdopterin binding domain ATH_0895 PF00005 ABC transporter ATH_0896 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ATH_0899 PF08338 Domain of unknown function (DUF1731) ATH_0899 PF01370 NAD dependent epimerase/dehydratase family ATH_0900 PF00875 DNA photolyase ATH_0900 PF03441 FAD binding domain of DNA photolyase ATH_0901 PF01713 Smr domain ATH_0901 PF00488 MutS domain V ATH_0902 PF03471 Transporter associated domain ATH_0902 PF00571 CBS domain ATH_0902 PF01595 Cyclin M transmembrane N-terminal domain ATH_0903 PF02253 Phospholipase A1 ATH_0904 PF00834 Ribulose-phosphate 3 epimerase family ATH_0905 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ATH_0906 PF02811 PHP domain ATH_0906 PF14579 Helix-hairpin-helix motif ATH_0906 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATH_0906 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATH_0906 PF11490 DNA polymerase III polC-type N-terminus II ATH_0906 PF14480 DNA polymerase III polC-type N-terminus I ATH_0906 PF00929 Exonuclease ATH_0907 PF05140 ResB-like family ATH_0907 PF01578 Cytochrome C assembly protein ATH_0908 PF07687 Peptidase dimerisation domain ATH_0908 PF01546 Peptidase family M20/M25/M40 ATH_0909 PF08003 Protein of unknown function (DUF1698) ATH_0910 PF00563 EAL domain ATH_0910 PF08447 PAS fold ATH_0910 PF08448 PAS fold ATH_0910 PF00990 Diguanylate cyclase, GGDEF domain ATH_0911 PF00753 Metallo-beta-lactamase superfamily ATH_0912 PF04305 Protein of unknown function (DUF455) ATH_0914 PF00684 DnaJ central domain ATH_0914 PF01556 DnaJ C terminal domain ATH_0914 PF00226 DnaJ domain ATH_0915 PF02132 RecR protein ATH_0915 PF13662 Toprim domain ATH_0920 PF00248 Aldo/keto reductase family ATH_0926 PF00925 GTP cyclohydrolase II ATH_0926 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ATH_0927 PF01293 Phosphoenolpyruvate carboxykinase ATH_0928 PF00364 Biotin-requiring enzyme ATH_0928 PF00682 HMGL-like ATH_0928 PF02436 Conserved carboxylase domain ATH_0932 PF01588 Putative tRNA binding domain ATH_0932 PF00133 tRNA synthetases class I (I, L, M and V) ATH_0932 PF09334 tRNA synthetases class I (M) ATH_0934 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ATH_0939 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATH_0940 PF05193 Peptidase M16 inactive domain ATH_0941 PF04055 Radical SAM superfamily ATH_0942 PF01103 Surface antigen ATH_0942 PF07244 Surface antigen variable number repeat ATH_0943 PF01842 ACT domain ATH_0943 PF02153 Prephenate dehydrogenase ATH_0944 PF00809 Pterin binding enzyme ATH_0947 PF01842 ACT domain ATH_0947 PF13840 ACT domain ATH_0947 PF00696 Amino acid kinase family ATH_0948 PF00293 NUDIX domain ATH_0949 PF06969 HemN C-terminal domain ATH_0949 PF04055 Radical SAM superfamily ATH_0950 PF05175 Methyltransferase small domain ATH_0950 PF17827 PrmC N-terminal domain ATH_0951 PF01432 Peptidase family M3 ATH_0954 PF18644 Phage integrase SAM-like domain ATH_0954 PF00589 Phage integrase family ATH_0956 PF00072 Response regulator receiver domain ATH_0956 PF01339 CheB methylesterase ATH_0957 PF03975 CheD chemotactic sensory transduction ATH_0958 PF01739 CheR methyltransferase, SAM binding domain ATH_0958 PF03705 CheR methyltransferase, all-alpha domain ATH_0959 PF01627 Hpt domain ATH_0959 PF09078 CheY binding ATH_0959 PF02895 Signal transducing histidine kinase, homodimeric domain ATH_0959 PF01584 CheW-like domain ATH_0959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0960 PF00072 Response regulator receiver domain ATH_0961 PF00013 KH domain ATH_0961 PF01138 3' exoribonuclease family, domain 1 ATH_0961 PF03725 3' exoribonuclease family, domain 2 ATH_0961 PF00575 S1 RNA binding domain ATH_0961 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ATH_0963 PF04453 LPS transport system D ATH_0963 PF03968 OstA-like protein ATH_0965 PF02843 Phosphoribosylglycinamide synthetase, C domain ATH_0965 PF02844 Phosphoribosylglycinamide synthetase, N domain ATH_0965 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATH_0967 PF01926 50S ribosome-binding GTPase ATH_0967 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ATH_0969 PF01032 FecCD transport family ATH_0970 PF00005 ABC transporter ATH_0971 PF01497 Periplasmic binding protein ATH_0972 PF07715 TonB-dependent Receptor Plug Domain ATH_0972 PF00593 TonB dependent receptor ATH_0975 PF13419 Haloacid dehalogenase-like hydrolase ATH_0976 PF00849 RNA pseudouridylate synthase ATH_0976 PF01479 S4 domain ATH_0977 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ATH_0981 PF01145 SPFH domain / Band 7 family ATH_0983 PF00672 HAMP domain ATH_0983 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_0983 PF00512 His Kinase A (phospho-acceptor) domain ATH_0983 PF13426 PAS domain ATH_0984 PF00072 Response regulator receiver domain ATH_0984 PF00486 Transcriptional regulatory protein, C terminal ATH_0986 PF02690 Na+/Pi-cotransporter ATH_0988 PF05525 Branched-chain amino acid transport protein ATH_0989 PF00588 SpoU rRNA Methylase family ATH_0990 PF01842 ACT domain ATH_0990 PF00551 Formyl transferase ATH_0991 PF00390 Malic enzyme, N-terminal domain ATH_0991 PF03949 Malic enzyme, NAD binding domain ATH_0991 PF01515 Phosphate acetyl/butaryl transferase ATH_0992 PF02578 Multi-copper polyphenol oxidoreductase laccase ATH_0994 PF08501 Shikimate dehydrogenase substrate binding domain ATH_0995 PF13307 Helicase C-terminal domain ATH_0995 PF00929 Exonuclease ATH_0996 PF02547 Queuosine biosynthesis protein ATH_0997 PF00902 Sec-independent protein translocase protein (TatC) ATH_0998 PF02416 mttA/Hcf106 family ATH_0999 PF05099 Tellurite resistance protein TerB ATH_0999 PF00226 DnaJ domain ATH_1002 PF02540 NAD synthase ATH_1003 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATH_1004 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ATH_1005 PF02028 BCCT, betaine/carnitine/choline family transporter ATH_1007 PF13183 4Fe-4S dicluster domain ATH_1007 PF02754 Cysteine-rich domain ATH_1007 PF02665 Nitrate reductase gamma subunit ATH_1008 PF01790 Prolipoprotein diacylglyceryl transferase ATH_1011 PF00672 HAMP domain ATH_1011 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_1011 PF02203 Tar ligand binding domain homologue ATH_1014 PF04461 Protein of unknown function (DUF520) ATH_1015 PF04241 Protein of unknown function (DUF423) ATH_1016 PF00156 Phosphoribosyl transferase domain ATH_1019 PF13597 Anaerobic ribonucleoside-triphosphate reductase ATH_1019 PF03477 ATP cone domain ATH_1020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATH_1020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATH_1021 PF06969 HemN C-terminal domain ATH_1021 PF04055 Radical SAM superfamily ATH_1023 PF01113 Dihydrodipicolinate reductase, N-terminus ATH_1023 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ATH_1025 PF16363 GDP-mannose 4,6 dehydratase ATH_1027 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ATH_1029 PF02397 Bacterial sugar transferase ATH_1030 PF00535 Glycosyl transferase family 2 ATH_1033 PF05199 GMC oxidoreductase ATH_1033 PF00732 GMC oxidoreductase ATH_1034 PF04991 LicD family ATH_1037 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ATH_1040 PF16363 GDP-mannose 4,6 dehydratase ATH_1042 PF04321 RmlD substrate binding domain ATH_1043 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ATH_1045 PF02092 Glycyl-tRNA synthetase beta subunit ATH_1049 PF02527 rRNA small subunit methyltransferase G ATH_1050 PF00925 GTP cyclohydrolase II ATH_1051 PF00490 Delta-aminolevulinic acid dehydratase ATH_1052 PF08448 PAS fold ATH_1052 PF08447 PAS fold ATH_1052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_1053 PF00072 Response regulator receiver domain ATH_1053 PF00486 Transcriptional regulatory protein, C terminal ATH_1054 PF00330 Aconitase family (aconitate hydratase) ATH_1054 PF06434 Aconitate hydratase 2 N-terminus ATH_1054 PF11791 Aconitate B N-terminal domain ATH_1055 PF01709 Transcriptional regulator ATH_1056 PF01551 Peptidase family M23 ATH_1056 PF08525 Opacity-associated protein A N-terminal motif ATH_1056 PF01476 LysM domain ATH_1058 PF03641 Possible lysine decarboxylase ATH_1060 PF01312 FlhB HrpN YscU SpaS Family ATH_1063 PF00106 short chain dehydrogenase ATH_1064 PF00528 Binding-protein-dependent transport system inner membrane component ATH_1064 PF12911 N-terminal TM domain of oligopeptide transport permease C ATH_1066 PF12072 Domain of unknown function (DUF3552) ATH_1066 PF00013 KH domain ATH_1066 PF01966 HD domain ATH_1068 PF00578 AhpC/TSA family ATH_1069 PF00448 SRP54-type protein, GTPase domain ATH_1071 PF18073 Rubredoxin metal binding domain ATH_1072 PF03741 Integral membrane protein TerC family ATH_1073 PF00218 Indole-3-glycerol phosphate synthase ATH_1075 PF03692 Putative zinc- or iron-chelating domain ATH_1076 PF05175 Methyltransferase small domain ATH_1078 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ATH_1078 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ATH_1078 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ATH_1079 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATH_1083 PF03548 Outer membrane lipoprotein carrier protein LolA ATH_1084 PF00271 Helicase conserved C-terminal domain ATH_1084 PF07517 SecA DEAD-like domain ATH_1084 PF02810 SEC-C motif ATH_1084 PF07516 SecA Wing and Scaffold domain ATH_1084 PF01043 SecA preprotein cross-linking domain ATH_1085 PF02687 FtsX-like permease family ATH_1085 PF12704 MacB-like periplasmic core domain ATH_1088 PF03971 Monomeric isocitrate dehydrogenase ATH_1089 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ATH_1089 PF00056 lactate/malate dehydrogenase, NAD binding domain ATH_1094 PF01795 MraW methylase family ATH_1096 PF00216 Bacterial DNA-binding protein ATH_1098 PF00533 BRCA1 C Terminus (BRCT) domain ATH_1098 PF01653 NAD-dependent DNA ligase adenylation domain ATH_1098 PF03120 NAD-dependent DNA ligase OB-fold domain ATH_1098 PF12826 Helix-hairpin-helix motif ATH_1104 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATH_1104 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATH_1104 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATH_1104 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATH_1105 PF00483 Nucleotidyl transferase ATH_1106 PF00342 Phosphoglucose isomerase ATH_1110 PF03372 Endonuclease/Exonuclease/phosphatase family ATH_1112 PF17674 HHH domain ATH_1112 PF00575 S1 RNA binding domain ATH_1112 PF09371 Tex-like protein N-terminal domain ATH_1112 PF16921 Tex protein YqgF-like domain ATH_1114 PF00132 Bacterial transferase hexapeptide (six repeats) ATH_1115 PF00764 Arginosuccinate synthase ATH_1116 PF01479 S4 domain ATH_1117 PF02885 Glycosyl transferase family, helical bundle domain ATH_1117 PF00591 Glycosyl transferase family, a/b domain ATH_1119 PF00005 ABC transporter ATH_1119 PF12399 Branched-chain amino acid ATP-binding cassette transporter ATH_1128 PF00437 Type II/IV secretion system protein ATH_1134 PF16326 ABC transporter C-terminal domain ATH_1134 PF12848 ABC transporter ATH_1134 PF00005 ABC transporter ATH_1135 PF14602 Hexapeptide repeat of succinyl-transferase ATH_1135 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ATH_1136 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ATH_1136 PF00270 DEAD/DEAH box helicase ATH_1136 PF00271 Helicase conserved C-terminal domain ATH_1136 PF17764 3′ DNA-binding domain (3′BD) ATH_1136 PF18074 Primosomal protein N C-terminal domain ATH_1153 PF09827 CRISPR associated protein Cas2 ATH_1154 PF01348 Type II intron maturase ATH_1154 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ATH_1165 PF12823 Domain of unknown function (DUF3817) ATH_1167 PF02568 Thiamine biosynthesis protein (ThiI) ATH_1167 PF02926 THUMP domain ATH_1171 PF09186 Domain of unknown function (DUF1949) ATH_1171 PF01205 Uncharacterized protein family UPF0029 ATH_1172 PF01479 S4 domain ATH_1172 PF01728 FtsJ-like methyltransferase ATH_1173 PF01687 Riboflavin kinase ATH_1173 PF06574 FAD synthetase ATH_1174 PF13649 Methyltransferase domain ATH_1175 PF00578 AhpC/TSA family ATH_1177 PF01565 FAD binding domain ATH_1177 PF02913 FAD linked oxidases, C-terminal domain ATH_1178 PF03631 Virulence factor BrkB ATH_1180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATH_1182 PF00793 DAHP synthetase I family ATH_1184 PF09827 CRISPR associated protein Cas2 ATH_1185 PF01867 CRISPR associated protein Cas1 ATH_1186 PF18541 RuvC endonuclease subdomain 3 ATH_1186 PF13395 HNH endonuclease ATH_1187 PF00885 6,7-dimethyl-8-ribityllumazine synthase ATH_1188 PF01029 NusB family ATH_1189 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ATH_1198 PF13614 AAA domain ATH_1202 PF02384 N-6 DNA Methylase ATH_1216 PF04231 Endonuclease I ATH_1220 PF00216 Bacterial DNA-binding protein ATH_1222 PF11799 impB/mucB/samB family C-terminal domain ATH_1222 PF11798 IMS family HHH motif ATH_1222 PF00817 impB/mucB/samB family ATH_1225 PF17841 BID domain of Bartonella effector protein (Bep) ATH_1225 PF02661 Fic/DOC family ATH_1234 PF13276 HTH-like domain ATH_1234 PF00665 Integrase core domain ATH_1234 PF13333 Integrase core domain ATH_1241 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ ATH_1243 PF02899 Phage integrase, N-terminal SAM-like domain ATH_1243 PF00589 Phage integrase family ATH_1245 PF00589 Phage integrase family ATH_1245 PF12167 Arm DNA-binding domain ATH_1247 PF00313 'Cold-shock' DNA-binding domain ATH_1257 PF09962 Uncharacterized conserved protein (DUF2196) ATH_1260 PF00817 impB/mucB/samB family ATH_1260 PF11799 impB/mucB/samB family C-terminal domain ATH_1260 PF11798 IMS family HHH motif ATH_1263 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATH_1263 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATH_1263 PF02142 MGS-like domain ATH_1265 PF00561 alpha/beta hydrolase fold ATH_1267 PF04143 Sulphur transport ATH_1268 PF12327 FtsZ family, C-terminal domain ATH_1268 PF00091 Tubulin/FtsZ family, GTPase domain ATH_1269 PF02491 SHS2 domain inserted in FTSA ATH_1271 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ATH_1271 PF14490 Helix-hairpin-helix containing domain ATH_1271 PF13538 UvrD-like helicase C-terminal domain ATH_1273 PF03960 ArsC family ATH_1276 PF03738 Glutathionylspermidine synthase preATP-grasp ATH_1277 PF03061 Thioesterase superfamily ATH_1278 PF00005 ABC transporter ATH_1278 PF12848 ABC transporter ATH_1280 PF00881 Nitroreductase family ATH_1284 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATH_1284 PF02770 Acyl-CoA dehydrogenase, middle domain ATH_1284 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATH_1286 PF03601 Conserved hypothetical protein 698 ATH_1287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATH_1287 PF03466 LysR substrate binding domain ATH_1288 PF08241 Methyltransferase domain ATH_1289 PF12833 Helix-turn-helix domain ATH_1299 PF13356 Arm DNA-binding domain ATH_1299 PF00589 Phage integrase family ATH_1300 PF00893 Small Multidrug Resistance protein ATH_1301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_1302 PF00486 Transcriptional regulatory protein, C terminal ATH_1302 PF00072 Response regulator receiver domain ATH_1304 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATH_1306 PF01266 FAD dependent oxidoreductase ATH_1306 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ATH_1307 PF00226 DnaJ domain ATH_1307 PF01556 DnaJ C terminal domain ATH_1308 PF13411 MerR HTH family regulatory protein ATH_1309 PF02130 Uncharacterized protein family UPF0054 ATH_1312 PF03023 Lipid II flippase MurJ ATH_1313 PF00005 ABC transporter ATH_1313 PF00664 ABC transporter transmembrane region ATH_1314 PF01180 Dihydroorotate dehydrogenase ATH_1315 PF05193 Peptidase M16 inactive domain ATH_1315 PF00675 Insulinase (Peptidase family M16) ATH_1316 PF00701 Dihydrodipicolinate synthetase family ATH_1318 PF01066 CDP-alcohol phosphatidyltransferase ATH_1319 PF17820 PDZ domain ATH_1319 PF02163 Peptidase family M50 ATH_1320 PF01168 Alanine racemase, N-terminal domain ATH_1321 PF00672 HAMP domain ATH_1321 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_1321 PF02203 Tar ligand binding domain homologue ATH_1322 PF08447 PAS fold ATH_1322 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_1324 PF00171 Aldehyde dehydrogenase family ATH_1326 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ATH_1326 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ATH_1329 PF00258 Flavodoxin ATH_1330 PF01475 Ferric uptake regulator family ATH_1331 PF04023 FeoA domain ATH_1332 PF07670 Nucleoside recognition ATH_1332 PF02421 Ferrous iron transport protein B ATH_1332 PF07664 Ferrous iron transport protein B C terminus ATH_1333 PF04377 Arginine-tRNA-protein transferase, C terminus ATH_1333 PF04376 Arginine-tRNA-protein transferase, N terminus ATH_1334 PF00290 Tryptophan synthase alpha chain ATH_1335 PF02548 Ketopantoate hydroxymethyltransferase ATH_1336 PF17864 RuvB AAA lid domain ATH_1336 PF05496 Holliday junction DNA helicase RuvB P-loop domain ATH_1336 PF05491 RuvB C-terminal winged helix domain ATH_1337 PF01594 AI-2E family transporter ATH_1353 PF08774 VRR-NUC domain ATH_1353 PF04851 Type III restriction enzyme, res subunit ATH_1355 PF18273 Type III R-M EcoP15I C-terminal domain ATH_1355 PF01555 DNA methylase ATH_1361 PF17200 Single Cache domain 2 ATH_1361 PF07730 Histidine kinase ATH_1362 PF00994 Probable molybdopterin binding domain ATH_1366 PF06067 Domain of unknown function (DUF932) ATH_1370 PF01979 Amidohydrolase family ATH_1371 PF01909 Nucleotidyltransferase domain ATH_1371 PF13427 Domain of unknown function (DUF4111) ATH_1372 PF01979 Amidohydrolase family ATH_1374 PF01227 GTP cyclohydrolase I ATH_1375 PF01544 CorA-like Mg2+ transporter protein ATH_1377 PF00437 Type II/IV secretion system protein ATH_1380 PF01926 50S ribosome-binding GTPase ATH_1380 PF07650 KH domain ATH_1381 PF13335 Magnesium chelatase, subunit ChlI C-terminal ATH_1381 PF01078 Magnesium chelatase, subunit ChlI ATH_1383 PF01327 Polypeptide deformylase ATH_1384 PF00574 Clp protease ATH_1385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATH_1385 PF05698 Bacterial trigger factor protein (TF) C-terminus ATH_1385 PF05697 Bacterial trigger factor protein (TF) ATH_1386 PF03976 Polyphosphate kinase 2 (PPK2) ATH_1387 PF03976 Polyphosphate kinase 2 (PPK2) ATH_1388 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ATH_1389 PF16653 Saccharopine dehydrogenase C-terminal domain ATH_1389 PF03435 Saccharopine dehydrogenase NADP binding domain ATH_1391 PF03150 Di-haem cytochrome c peroxidase ATH_1392 PF04116 Fatty acid hydroxylase superfamily ATH_1397 PF00137 ATP synthase subunit C ATH_1406 PF01208 Uroporphyrinogen decarboxylase (URO-D) ATH_1408 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATH_1408 PF02774 Semialdehyde dehydrogenase, dimerisation domain ATH_1409 PF03989 DNA gyrase C-terminal domain, beta-propeller ATH_1409 PF00521 DNA gyrase/topoisomerase IV, subunit A ATH_1411 PF01960 ArgJ family ATH_1413 PF00830 Ribosomal L28 family ATH_1415 PF08645 Polynucleotide kinase 3 phosphatase ATH_1416 PF01370 NAD dependent epimerase/dehydratase family ATH_1417 PF00294 pfkB family carbohydrate kinase ATH_1417 PF01467 Cytidylyltransferase-like ATH_1418 PF13580 SIS domain ATH_1419 PF00884 Sulfatase ATH_1420 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ATH_1422 PF00884 Sulfatase ATH_1423 PF00535 Glycosyl transferase family 2 ATH_1426 PF00535 Glycosyl transferase family 2 ATH_1428 PF11893 Domain of unknown function (DUF3413) ATH_1428 PF00884 Sulfatase ATH_1429 PF01219 Prokaryotic diacylglycerol kinase ATH_1431 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ATH_1433 PF00037 4Fe-4S binding domain ATH_1434 PF00459 Inositol monophosphatase family ATH_1437 PF03958 Bacterial type II/III secretion system short domain ATH_1437 PF00263 Bacterial type II and III secretion system protein ATH_1438 PF00293 NUDIX domain ATH_1456 PF03841 L-seryl-tRNA selenium transferase ATH_1457 PF09107 Elongation factor SelB, winged helix ATH_1457 PF00009 Elongation factor Tu GTP binding domain ATH_1457 PF03144 Elongation factor Tu domain 2 ATH_1457 PF09105 Elongation factor SelB, winged helix ATH_1457 PF09106 Elongation factor SelB, winged helix ATH_1466 PF10442 FIST C domain ATH_1466 PF08495 FIST N domain ATH_1466 PF00563 EAL domain ATH_1466 PF00990 Diguanylate cyclase, GGDEF domain ATH_1467 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ATH_1467 PF01243 Pyridoxamine 5'-phosphate oxidase ATH_1468 PF00563 EAL domain ATH_1468 PF00990 Diguanylate cyclase, GGDEF domain ATH_1468 PF03707 Bacterial signalling protein N terminal repeat ATH_1469 PF03880 DbpA RNA binding domain ATH_1469 PF00270 DEAD/DEAH box helicase ATH_1469 PF00271 Helicase conserved C-terminal domain ATH_1471 PF00183 Hsp90 protein ATH_1477 PF04073 Aminoacyl-tRNA editing domain ATH_1478 PF08713 DNA alkylation repair enzyme ATH_1479 PF05958 tRNA (Uracil-5-)-methyltransferase ATH_1480 PF00593 TonB dependent receptor ATH_1480 PF07715 TonB-dependent Receptor Plug Domain ATH_1483 PF00491 Arginase family ATH_1484 PF00682 HMGL-like ATH_1484 PF08502 LeuA allosteric (dimerisation) domain ATH_1486 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATH_1486 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATH_1487 PF00924 Mechanosensitive ion channel ATH_1488 PF01368 DHH family ATH_1488 PF02833 DHHA2 domain ATH_1489 PF02810 SEC-C motif ATH_1490 PF00672 HAMP domain ATH_1490 PF02203 Tar ligand binding domain homologue ATH_1490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_1494 PF10415 Fumarase C C-terminus ATH_1494 PF00206 Lyase ATH_1495 PF01048 Phosphorylase superfamily ATH_1496 PF00698 Acyl transferase domain ATH_1497 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATH_1499 PF00691 OmpA family ATH_1500 PF04052 TolB amino-terminal domain ATH_1502 PF02472 Biopolymer transport protein ExbD/TolR ATH_1503 PF01618 MotA/TolQ/ExbB proton channel family ATH_1504 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATH_1505 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATH_1505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATH_1506 PF00231 ATP synthase ATH_1507 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATH_1507 PF00306 ATP synthase alpha/beta chain, C terminal domain ATH_1507 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATH_1508 PF00213 ATP synthase delta (OSCP) subunit ATH_1509 PF00430 ATP synthase B/B' CF(0) ATH_1511 PF17762 HTH domain found in ParB protein ATH_1511 PF02195 ParB-like nuclease domain ATH_1512 PF13614 AAA domain ATH_1513 PF02237 Biotin protein ligase C terminal domain ATH_1513 PF03099 Biotin/lipoate A/B protein ligase family ATH_1513 PF08279 HTH domain ATH_1515 PF02911 Formyl transferase, C-terminal domain ATH_1515 PF00551 Formyl transferase ATH_1516 PF00696 Amino acid kinase family ATH_1517 PF01018 GTP1/OBG ATH_1517 PF01926 50S ribosome-binding GTPase ATH_1518 PF01016 Ribosomal L27 protein ATH_1519 PF00829 Ribosomal prokaryotic L21 protein ATH_1520 PF08275 DNA primase catalytic core, N-terminal domain ATH_1520 PF01807 CHC2 zinc finger ATH_1520 PF16730 DnaG-primase C-terminal, helicase-binding domain ATH_1520 PF13662 Toprim domain ATH_1522 PF00035 Double-stranded RNA binding motif ATH_1522 PF14622 Ribonuclease-III-like ATH_1523 PF01264 Chorismate synthase ATH_1524 PF03976 Polyphosphate kinase 2 (PPK2) ATH_1526 PF01625 Peptide methionine sulfoxide reductase ATH_1527 PF08238 Sel1 repeat ATH_1527 PF13181 Tetratricopeptide repeat ATH_1529 PF01641 SelR domain ATH_1530 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATH_1532 PF00202 Aminotransferase class-III ATH_1533 PF08447 PAS fold ATH_1533 PF08448 PAS fold ATH_1533 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_1534 PF01808 AICARFT/IMPCHase bienzyme ATH_1534 PF02142 MGS-like domain ATH_1535 PF00586 AIR synthase related protein, N-terminal domain ATH_1535 PF02769 AIR synthase related protein, C-terminal domain ATH_1535 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ATH_1537 PF01464 Transglycosylase SLT domain ATH_1537 PF01551 Peptidase family M23 ATH_1537 PF10145 Phage-related minor tail protein ATH_1541 PF04997 RNA polymerase Rpb1, domain 1 ATH_1541 PF00623 RNA polymerase Rpb1, domain 2 ATH_1541 PF04983 RNA polymerase Rpb1, domain 3 ATH_1541 PF05000 RNA polymerase Rpb1, domain 4 ATH_1541 PF04998 RNA polymerase Rpb1, domain 5 ATH_1542 PF04560 RNA polymerase Rpb2, domain 7 ATH_1542 PF04563 RNA polymerase beta subunit ATH_1542 PF10385 RNA polymerase beta subunit external 1 domain ATH_1542 PF00562 RNA polymerase Rpb2, domain 6 ATH_1542 PF04561 RNA polymerase Rpb2, domain 2 ATH_1542 PF04565 RNA polymerase Rpb2, domain 3 ATH_1543 PF00542 Ribosomal protein L7/L12 C-terminal domain ATH_1543 PF16320 Ribosomal protein L7/L12 dimerisation domain ATH_1544 PF00466 Ribosomal protein L10 ATH_1545 PF00687 Ribosomal protein L1p/L10e family ATH_1546 PF03946 Ribosomal protein L11, N-terminal domain ATH_1546 PF00298 Ribosomal protein L11, RNA binding domain ATH_1547 PF02357 Transcription termination factor nusG ATH_1550 PF00471 Ribosomal protein L33 ATH_1551 PF00009 Elongation factor Tu GTP binding domain ATH_1551 PF03144 Elongation factor Tu domain 2 ATH_1551 PF03143 Elongation factor Tu C-terminal domain ATH_1556 PF08245 Mur ligase middle domain ATH_1557 PF00953 Glycosyl transferase family 4 ATH_1557 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ATH_1558 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ATH_1558 PF01676 Metalloenzyme superfamily ATH_1559 PF00005 ABC transporter ATH_1559 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATH_1560 PF00912 Transglycosylase ATH_1560 PF00905 Penicillin binding protein transpeptidase domain ATH_1572 PF00174 Oxidoreductase molybdopterin binding domain ATH_1573 PF00999 Sodium/hydrogen exchanger family ATH_1573 PF02080 TrkA-C domain ATH_1573 PF02254 TrkA-N domain ATH_1574 PF13361 UvrD-like helicase C-terminal domain ATH_1574 PF00580 UvrD/REP helicase N-terminal domain ATH_1576 PF08534 Redoxin ATH_1577 PF13509 S1 domain ATH_1577 PF17783 CvfB-like winged helix domain ATH_1578 PF00950 ABC 3 transport family ATH_1579 PF00005 ABC transporter ATH_1580 PF02203 Tar ligand binding domain homologue ATH_1580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_1580 PF00672 HAMP domain ATH_1581 PF01875 Memo-like protein ATH_1582 PF01871 AMMECR1 ATH_1582 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ATH_1583 PF10414 Sirohaem synthase dimerisation region ATH_1583 PF14824 Sirohaem biosynthesis protein central ATH_1583 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATH_1585 PF12161 HsdM N-terminal domain ATH_1585 PF02384 N-6 DNA Methylase ATH_1586 PF02661 Fic/DOC family ATH_1586 PF13784 Fic/DOC family N-terminal ATH_1589 PF00271 Helicase conserved C-terminal domain ATH_1589 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ATH_1589 PF04851 Type III restriction enzyme, res subunit ATH_1589 PF08463 EcoEI R protein C-terminal ATH_1590 PF00118 TCP-1/cpn60 chaperonin family ATH_1591 PF00166 Chaperonin 10 Kd subunit ATH_1592 PF00348 Polyprenyl synthetase ATH_1593 PF02575 YbaB/EbfC DNA-binding family ATH_1594 PF02261 Aspartate decarboxylase ATH_1595 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ATH_1596 PF01584 CheW-like domain ATH_1597 PF02601 Exonuclease VII, large subunit ATH_1597 PF13742 OB-fold nucleic acid binding domain ATH_1598 PF01209 ubiE/COQ5 methyltransferase family ATH_1601 PF13277 YmdB-like protein ATH_1602 PF18719 ArlS sensor domain ATH_1602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_1602 PF00512 His Kinase A (phospho-acceptor) domain ATH_1604 PF02954 Bacterial regulatory protein, Fis family ATH_1604 PF00072 Response regulator receiver domain ATH_1604 PF00158 Sigma-54 interaction domain ATH_1605 PF02203 Tar ligand binding domain homologue ATH_1605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_1605 PF00672 HAMP domain ATH_1608 PF00072 Response regulator receiver domain ATH_1608 PF00486 Transcriptional regulatory protein, C terminal ATH_1612 PF02559 CarD-like/TRCF domain ATH_1612 PF00271 Helicase conserved C-terminal domain ATH_1612 PF03461 TRCF domain ATH_1612 PF17757 UvrB interaction domain ATH_1612 PF00270 DEAD/DEAH box helicase ATH_1621 PF00133 tRNA synthetases class I (I, L, M and V) ATH_1621 PF13603 Leucyl-tRNA synthetase, Domain 2 ATH_1621 PF09334 tRNA synthetases class I (M) ATH_1623 PF01618 MotA/TolQ/ExbB proton channel family ATH_1624 PF13677 Membrane MotB of proton-channel complex MotA/MotB ATH_1624 PF00691 OmpA family ATH_1626 PF07549 SecD/SecF GG Motif ATH_1626 PF02355 Protein export membrane protein ATH_1627 PF02355 Protein export membrane protein ATH_1628 PF02699 Preprotein translocase subunit ATH_1630 PF00593 TonB dependent receptor ATH_1630 PF07715 TonB-dependent Receptor Plug Domain ATH_1631 PF01966 HD domain ATH_1631 PF01743 Poly A polymerase head domain ATH_1631 PF12627 Probable RNA and SrmB- binding site of polymerase A ATH_1632 PF05552 Conserved TM helix ATH_1632 PF00924 Mechanosensitive ion channel ATH_1633 PF03129 Anticodon binding domain ATH_1633 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATH_1633 PF04073 Aminoacyl-tRNA editing domain ATH_1634 PF01488 Shikimate / quinate 5-dehydrogenase ATH_1634 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ATH_1634 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ATH_1635 PF00348 Polyprenyl synthetase ATH_1637 PF00815 Histidinol dehydrogenase ATH_1638 PF01202 Shikimate kinase ATH_1640 PF01618 MotA/TolQ/ExbB proton channel family ATH_1641 PF02472 Biopolymer transport protein ExbD/TolR ATH_1643 PF01594 AI-2E family transporter ATH_1644 PF00171 Aldehyde dehydrogenase family ATH_1645 PF01116 Fructose-bisphosphate aldolase class-II ATH_1646 PF00639 PPIC-type PPIASE domain ATH_1647 PF00072 Response regulator receiver domain ATH_1647 PF00486 Transcriptional regulatory protein, C terminal ATH_1648 PF00672 HAMP domain ATH_1648 PF00512 His Kinase A (phospho-acceptor) domain ATH_1648 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_1651 PF02082 Transcriptional regulator ATH_1652 PF00312 Ribosomal protein S15 ATH_1653 PF04055 Radical SAM superfamily ATH_1653 PF06463 Molybdenum Cofactor Synthesis C ATH_1654 PF02885 Glycosyl transferase family, helical bundle domain ATH_1654 PF00591 Glycosyl transferase family, a/b domain ATH_1657 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ATH_1657 PF00384 Molybdopterin oxidoreductase ATH_1657 PF01568 Molydopterin dinucleotide binding domain ATH_1657 PF10518 TAT (twin-arginine translocation) pathway signal sequence ATH_1658 PF12800 4Fe-4S binding domain ATH_1658 PF12838 4Fe-4S dicluster domain ATH_1659 PF12801 4Fe-4S binding domain ATH_1659 PF00037 4Fe-4S binding domain ATH_1660 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ATH_1664 PF02403 Seryl-tRNA synthetase N-terminal domain ATH_1664 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATH_1666 PF02659 Putative manganese efflux pump ATH_1668 PF07715 TonB-dependent Receptor Plug Domain ATH_1668 PF00593 TonB dependent receptor ATH_1669 PF13649 Methyltransferase domain ATH_1671 PF03994 Domain of Unknown Function (DUF350) ATH_1672 PF00579 tRNA synthetases class I (W and Y) ATH_1673 PF00486 Transcriptional regulatory protein, C terminal ATH_1673 PF00072 Response regulator receiver domain ATH_1674 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATH_1674 PF00512 His Kinase A (phospho-acceptor) domain ATH_1674 PF00672 HAMP domain ATH_1675 PF00202 Aminotransferase class-III ATH_1677 PF03831 PhnA domain ATH_1677 PF08274 PhnA Zinc-Ribbon ATH_1679 PF00425 chorismate binding enzyme ATH_1680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATH_1680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATH_1682 PF00857 Isochorismatase family ATH_1684 PF12102 Domain of unknown function (DUF3578) ATH_1684 PF07728 AAA domain (dynein-related subfamily) ATH_1684 PF12102 Domain of unknown function (DUF3578) ATH_1684 PF07728 AAA domain (dynein-related subfamily) ATH_1686 PF03900 Porphobilinogen deaminase, C-terminal domain ATH_1686 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ATH_1688 PF12170 DNA polymerase III tau subunit V interacting with alpha ATH_1688 PF12169 DNA polymerase III subunits gamma and tau domain III ATH_1689 PF01177 Asp/Glu/Hydantoin racemase ATH_1690 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ATH_1690 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ATH_1691 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATH_1691 PF07498 Rho termination factor, N-terminal domain ATH_1691 PF07497 Rho termination factor, RNA-binding domain ATH_1692 PF00578 AhpC/TSA family ATH_1692 PF10417 C-terminal domain of 1-Cys peroxiredoxin ATH_1694 PF00334 Nucleoside diphosphate kinase ATH_1696 PF01783 Ribosomal L32p protein family ATH_1697 PF02504 Fatty acid synthesis protein ATH_1698 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATH_1698 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATH_1700 PF00350 Dynamin family ATH_1701 PF00350 Dynamin family ATH_1702 PF13085 2Fe-2S iron-sulfur cluster binding domain ATH_1702 PF13183 4Fe-4S dicluster domain ATH_1703 PF00890 FAD binding domain ATH_1703 PF02910 Fumarate reductase flavoprotein C-term ATH_1704 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATH_1705 PF00361 Proton-conducting membrane transporter ATH_1706 PF00361 Proton-conducting membrane transporter ATH_1707 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATH_1707 PF00361 Proton-conducting membrane transporter ATH_1708 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ATH_1709 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ATH_1710 PF12838 4Fe-4S dicluster domain ATH_1711 PF00146 NADH dehydrogenase ATH_1712 PF00384 Molybdopterin oxidoreductase ATH_1712 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ATH_1712 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ATH_1713 PF00285 Citrate synthase, C-terminal domain ATH_1714 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ATH_1714 PF10531 SLBB domain ATH_1714 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ATH_1716 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ATH_1716 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ATH_1717 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ATH_1718 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ATH_1719 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ATH_1720 PF12821 Threonine/Serine exporter, ThrE ATH_1720 PF06738 Putative threonine/serine exporter ATH_1721 PF06738 Putative threonine/serine exporter ATH_1723 PF03309 Type III pantothenate kinase ATH_1724 PF01634 ATP phosphoribosyltransferase ATH_1726 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_1726 PF00672 HAMP domain ATH_1726 PF02203 Tar ligand binding domain homologue ATH_1727 PF08448 PAS fold ATH_1727 PF00990 Diguanylate cyclase, GGDEF domain ATH_1731 PF01476 LysM domain ATH_1731 PF03734 L,D-transpeptidase catalytic domain ATH_1732 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATH_1732 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATH_1735 PF00285 Citrate synthase, C-terminal domain ATH_1736 PF00330 Aconitase family (aconitate hydratase) ATH_1736 PF00694 Aconitase C-terminal domain ATH_1737 PF04303 PrpF protein ATH_1738 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ATH_1738 PF01464 Transglycosylase SLT domain ATH_1739 PF00224 Pyruvate kinase, barrel domain ATH_1739 PF02887 Pyruvate kinase, alpha/beta domain ATH_1739 PF00391 PEP-utilising enzyme, mobile domain ATH_1741 PF02021 Uncharacterised protein family UPF0102 ATH_1742 PF00155 Aminotransferase class I and II ATH_1743 PF00484 Carbonic anhydrase ATH_1745 PF04055 Radical SAM superfamily ATH_1747 PF04028 Domain of unknown function (DUF374) ATH_1748 PF04055 Radical SAM superfamily ATH_1748 PF01938 TRAM domain ATH_1748 PF00919 Uncharacterized protein family UPF0004 ATH_1750 PF13184 NusA-like KH domain ATH_1750 PF08529 NusA N-terminal domain ATH_1751 PF01406 tRNA synthetases class I (C) catalytic domain ATH_1751 PF09190 DALR domain ATH_1753 PF01084 Ribosomal protein S18 ATH_1754 PF00436 Single-strand binding protein family ATH_1755 PF01250 Ribosomal protein S6 ATH_1757 PF08206 Ribonuclease B OB domain ATH_1757 PF00575 S1 RNA binding domain ATH_1757 PF00773 RNB domain ATH_1757 PF08461 Ribonuclease R winged-helix domain ATH_1757 PF17876 Cold shock domain ATH_1758 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ATH_1758 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ATH_1761 PF00440 Bacterial regulatory proteins, tetR family ATH_1761 PF16925 Tetracyclin repressor-like, C-terminal domain ATH_1763 PF00156 Phosphoribosyl transferase domain ATH_1763 PF13537 Glutamine amidotransferase domain ATH_1764 PF01113 Dihydrodipicolinate reductase, N-terminus ATH_1764 PF05173 Dihydrodipicolinate reductase, C-terminus ATH_1765 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATH_1766 PF00085 Thioredoxin ATH_1767 PF02272 DHHA1 domain ATH_1767 PF01411 tRNA synthetases class II (A) ATH_1767 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATH_1771 PF00486 Transcriptional regulatory protein, C terminal ATH_1771 PF00072 Response regulator receiver domain ATH_1772 PF13180 PDZ domain ATH_1772 PF17820 PDZ domain ATH_1773 PF00920 Dehydratase family ATH_1780 PF01258 Prokaryotic dksA/traR C4-type zinc finger ATH_1781 PF01142 tRNA pseudouridine synthase D (TruD) ATH_1782 PF15437 Plasminogen-binding protein pgbA C-terminal ATH_1784 PF13180 PDZ domain ATH_1784 PF03572 Peptidase family S41 ATH_1785 PF01259 SAICAR synthetase ATH_1786 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ATH_1789 PF01553 Acyltransferase ATH_1790 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ATH_1791 PF02416 mttA/Hcf106 family ATH_1792 PF02416 mttA/Hcf106 family ATH_1793 PF03485 Arginyl tRNA synthetase N terminal domain ATH_1793 PF05746 DALR anticodon binding domain ATH_1793 PF00750 tRNA synthetases class I (R) ATH_1795 PF01467 Cytidylyltransferase-like ATH_1796 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATH_1796 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ATH_1797 PF00162 Phosphoglycerate kinase ATH_1798 PF00121 Triosephosphate isomerase ATH_1800 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ATH_1800 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATH_1801 PF00800 Prephenate dehydratase ATH_1801 PF01817 Chorismate mutase type II ATH_1801 PF01842 ACT domain ATH_1802 PF00155 Aminotransferase class I and II ATH_1803 PF02780 Transketolase, C-terminal domain ATH_1803 PF02779 Transketolase, pyrimidine binding domain ATH_1803 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ATH_1804 PF00034 Cytochrome c ATH_1804 PF03150 Di-haem cytochrome c peroxidase ATH_1805 PF02545 Maf-like protein ATH_1807 PF01914 MarC family integral membrane protein ATH_1809 PF00939 Sodium:sulfate symporter transmembrane region ATH_1811 PF02683 Cytochrome C biogenesis protein transmembrane region ATH_1811 PF00085 Thioredoxin ATH_1811 PF11412 Disulphide bond corrector protein DsbC ATH_1812 PF00085 Thioredoxin ATH_1813 PF08443 RimK-like ATP-grasp domain ATH_1813 PF18030 RimK PreATP-grasp domain ATH_1816 PF00563 EAL domain ATH_1816 PF10442 FIST C domain ATH_1816 PF08495 FIST N domain ATH_1816 PF00990 Diguanylate cyclase, GGDEF domain ATH_1817 PF02666 Phosphatidylserine decarboxylase ATH_1820 PF06725 3D domain ATH_1820 PF03562 MltA specific insert domain ATH_1821 PF00012 Hsp70 protein ATH_1822 PF01025 GrpE ATH_1824 PF00005 ABC transporter ATH_1827 PF01891 Cobalt uptake substrate-specific transmembrane region ATH_1827 PF13190 PDGLE domain ATH_1829 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ATH_1830 PF02769 AIR synthase related protein, C-terminal domain ATH_1830 PF00586 AIR synthase related protein, N-terminal domain ATH_1832 PF07728 AAA domain (dynein-related subfamily) ATH_1832 PF12102 Domain of unknown function (DUF3578) ATH_1834 PF01924 Hydrogenase formation hypA family ATH_1835 PF01455 HupF/HypC family ATH_1836 PF02492 CobW/HypB/UreG, nucleotide-binding domain ATH_1838 PF07503 HypF finger ATH_1838 PF01300 Telomere recombination ATH_1838 PF17788 HypF Kae1-like domain ATH_1838 PF00708 Acylphosphatase ATH_1840 PF01750 Hydrogenase maturation protease ATH_1841 PF01292 Prokaryotic cytochrome b561 ATH_1842 PF00374 Nickel-dependent hydrogenase ATH_1843 PF10518 TAT (twin-arginine translocation) pathway signal sequence ATH_1843 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ATH_1843 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ATH_1844 PF01416 tRNA pseudouridine synthase ATH_1847 PF01255 Putative undecaprenyl diphosphate synthase ATH_1848 PF02441 Flavoprotein ATH_1848 PF04127 DNA / pantothenate metabolism flavoprotein ATH_1849 PF12804 MobA-like NTP transferase domain ATH_1849 PF14602 Hexapeptide repeat of succinyl-transferase ATH_1851 PF00271 Helicase conserved C-terminal domain ATH_1851 PF00270 DEAD/DEAH box helicase ATH_1851 PF17191 RecG wedge domain ATH_1852 PF05958 tRNA (Uracil-5-)-methyltransferase ATH_1853 PF00669 Bacterial flagellin N-terminal helical region ATH_1853 PF07196 Flagellin hook IN motif ATH_1853 PF00700 Bacterial flagellin C-terminal helical region ATH_1854 PF00700 Bacterial flagellin C-terminal helical region ATH_1854 PF00669 Bacterial flagellin N-terminal helical region ATH_1856 PF13302 Acetyltransferase (GNAT) domain ATH_1857 PF02585 GlcNAc-PI de-N-acetylase ATH_1859 PF03102 NeuB family ATH_1859 PF08666 SAF domain ATH_1860 PF13302 Acetyltransferase (GNAT) domain ATH_1862 PF02348 Cytidylyltransferase ATH_1863 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATH_1864 PF02719 Polysaccharide biosynthesis protein ATH_1866 PF00154 recA bacterial DNA recombination protein ATH_1867 PF00209 Sodium:neurotransmitter symporter family ATH_1868 PF01261 Xylose isomerase-like TIM barrel ATH_1870 PF00916 Sulfate permease family ATH_1870 PF01740 STAS domain ATH_1872 PF00004 ATPase family associated with various cellular activities (AAA) ATH_1872 PF16450 Proteasomal ATPase OB C-terminal domain ATH_1872 PF17758 Proteasomal ATPase OB N-terminal domain ATH_1874 PF02621 Menaquinone biosynthesis ATH_1875 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ATH_1876 PF16226 Domain of unknown function (DUF4885) ATH_1877 PF13368 Topoisomerase C-terminal repeat ATH_1877 PF01751 Toprim domain ATH_1877 PF01131 DNA topoisomerase ATH_1879 PF04055 Radical SAM superfamily ATH_1879 PF06968 Biotin and Thiamin Synthesis associated domain ATH_1880 PF03952 Enolase, N-terminal domain ATH_1880 PF00113 Enolase, C-terminal TIM barrel domain ATH_1883 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ATH_1883 PF18766 SWI2/SNF2 ATPase ATH_1883 PF12008 Type I restriction and modification enzyme - subunit R C terminal ATH_1890 PF02384 N-6 DNA Methylase ATH_1890 PF12161 HsdM N-terminal domain ATH_1891 PF01134 Glucose inhibited division protein A ATH_1891 PF13932 GidA associated domain ATH_1892 PF00677 Lumazine binding domain ATH_1893 PF01769 Divalent cation transporter ATH_1893 PF00571 CBS domain ATH_1893 PF03448 MgtE intracellular N domain ATH_1896 PF10431 C-terminal, D2-small domain, of ClpB protein ATH_1896 PF06689 ClpX C4-type zinc finger ATH_1896 PF07724 AAA domain (Cdc48 subfamily) ATH_1897 PF00132 Bacterial transferase hexapeptide (six repeats) ATH_1897 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ATH_1898 PF07977 FabA-like domain ATH_1899 PF02684 Lipid-A-disaccharide synthetase ATH_1900 PF02677 Epoxyqueuosine reductase QueH ATH_1906 PF01027 Inhibitor of apoptosis-promoting Bax1 ATH_1908 PF03840 Preprotein translocase SecG subunit ATH_1909 PF01765 Ribosome recycling factor ATH_1910 PF00156 Phosphoribosyl transferase domain ATH_1913 PF01212 Beta-eliminating lyase ATH_1914 PF01544 CorA-like Mg2+ transporter protein ATH_1915 PF03883 Peroxide stress protein YaaA ATH_1916 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ATH_1916 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ATH_1920 PF03167 Uracil DNA glycosylase superfamily ATH_1921 PF00171 Aldehyde dehydrogenase family ATH_1922 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATH_1922 PF00205 Thiamine pyrophosphate enzyme, central domain ATH_1922 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATH_1923 PF13419 Haloacid dehalogenase-like hydrolase ATH_1924 PF01568 Molydopterin dinucleotide binding domain ATH_1924 PF18364 Molybdopterin oxidoreductase N-terminal domain ATH_1924 PF00384 Molybdopterin oxidoreductase ATH_1926 PF00210 Ferritin-like domain ATH_1927 PF07690 Major Facilitator Superfamily ATH_1929 PF00990 Diguanylate cyclase, GGDEF domain ATH_1929 PF08448 PAS fold ATH_1930 PF00529 HlyD membrane-fusion protein of T1SS ATH_1930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATH_1931 PF00873 AcrB/AcrD/AcrF family ATH_1932 PF02321 Outer membrane efflux protein ATH_1933 PF00672 HAMP domain ATH_1933 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATH_1933 PF02203 Tar ligand binding domain homologue ATH_1935 PF01053 Cys/Met metabolism PLP-dependent enzyme ATH_1936 PF02082 Transcriptional regulator ATH_1937 PF00291 Pyridoxal-phosphate dependent enzyme ATH_1939 PF01507 Phosphoadenosine phosphosulfate reductase family ATH_1940 PF01507 Phosphoadenosine phosphosulfate reductase family ATH_1941 PF00009 Elongation factor Tu GTP binding domain ATH_1943 PF00291 Pyridoxal-phosphate dependent enzyme ATH_1945 PF00266 Aminotransferase class-V ATH_1947 PF00149 Calcineurin-like phosphoesterase ATH_1948 PF02630 SCO1/SenC ATH_1952 PF00990 Diguanylate cyclase, GGDEF domain ATH_1952 PF00563 EAL domain ATH_1952 PF08495 FIST N domain ATH_1952 PF10442 FIST C domain ATH_1953 PF00581 Rhodanese-like domain ATH_1953 PF00899 ThiF family ATH_1954 PF00679 Elongation factor G C-terminus ATH_1954 PF03144 Elongation factor Tu domain 2 ATH_1954 PF00009 Elongation factor Tu GTP binding domain ATH_1955 PF04143 Sulphur transport ATH_1956 PF01206 Sulfurtransferase TusA ATH_1958 PF00486 Transcriptional regulatory protein, C terminal ATH_1958 PF00072 Response regulator receiver domain ATH_1960 PF02511 Thymidylate synthase complementing protein ATH_1961 PF03458 UPF0126 domain ATH_1963 PF16226 Domain of unknown function (DUF4885) ATH_1966 PF00551 Formyl transferase ATH_1966 PF02911 Formyl transferase, C-terminal domain ATH_1967 PF02075 Crossover junction endodeoxyribonuclease RuvC