locus-tag class description ATR_0001 PF00308 Bacterial dnaA protein ATR_0001 PF08299 Bacterial dnaA protein helix-turn-helix ATR_0001 PF11638 DnaA N-terminal domain ATR_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ATR_0002 PF02767 DNA polymerase III beta subunit, central domain ATR_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ATR_0003 PF00204 DNA gyrase B ATR_0003 PF00986 DNA gyrase B subunit, carboxyl terminus ATR_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_0003 PF01751 Toprim domain ATR_0004 PF14489 QueF-like protein ATR_0008 PF13649 Methyltransferase domain ATR_0010 PF00005 ABC transporter ATR_0011 PF01032 FecCD transport family ATR_0014 PF00005 ABC transporter ATR_0014 PF08402 TOBE domain ATR_0015 PF00528 Binding-protein-dependent transport system inner membrane component ATR_0018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATR_0018 PF03459 TOBE domain ATR_0020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATR_0020 PF03466 LysR substrate binding domain ATR_0022 PF00291 Pyridoxal-phosphate dependent enzyme ATR_0023 PF04264 YceI-like domain ATR_0024 PF00873 AcrB/AcrD/AcrF family ATR_0028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_0029 PF00072 Response regulator receiver domain ATR_0029 PF00486 Transcriptional regulatory protein, C terminal ATR_0030 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ATR_0031 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATR_0032 PF04055 Radical SAM superfamily ATR_0035 PF00977 Histidine biosynthesis protein ATR_0036 PF00398 Ribosomal RNA adenine dimethylase ATR_0037 PF17770 Ribonuclease J C-terminal domain ATR_0037 PF00753 Metallo-beta-lactamase superfamily ATR_0037 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ATR_0038 PF01380 SIS domain ATR_0038 PF00571 CBS domain ATR_0039 PF01479 S4 domain ATR_0039 PF00849 RNA pseudouridylate synthase ATR_0040 PF16193 AAA C-terminal domain ATR_0040 PF01661 Macro domain ATR_0040 PF12002 MgsA AAA+ ATPase C terminal ATR_0040 PF05496 Holliday junction DNA helicase RuvB P-loop domain ATR_0041 PF03653 Uncharacterised protein family (UPF0093) ATR_0042 PF02562 PhoH-like protein ATR_0042 PF13638 PIN domain ATR_0044 PF13537 Glutamine amidotransferase domain ATR_0044 PF00733 Asparagine synthase ATR_0046 PF01384 Phosphate transporter family ATR_0047 PF00270 DEAD/DEAH box helicase ATR_0047 PF00271 Helicase conserved C-terminal domain ATR_0048 PF00289 Biotin carboxylase, N-terminal domain ATR_0048 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATR_0048 PF02785 Biotin carboxylase C-terminal domain ATR_0049 PF00364 Biotin-requiring enzyme ATR_0050 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATR_0052 PF02934 GatB/GatE catalytic domain ATR_0052 PF02637 GatB domain ATR_0053 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ATR_0053 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATR_0054 PF08240 Alcohol dehydrogenase GroES-like domain ATR_0054 PF00107 Zinc-binding dehydrogenase ATR_0056 PF00691 OmpA family ATR_0056 PF05736 OprF membrane domain ATR_0057 PF00268 Ribonucleotide reductase, small chain ATR_0058 PF00317 Ribonucleotide reductase, all-alpha domain ATR_0058 PF02867 Ribonucleotide reductase, barrel domain ATR_0058 PF03477 ATP cone domain ATR_0059 PF00206 Lyase ATR_0059 PF10397 Adenylosuccinate lyase C-terminus ATR_0060 PF00849 RNA pseudouridylate synthase ATR_0061 PF01842 ACT domain ATR_0061 PF00742 Homoserine dehydrogenase ATR_0061 PF03447 Homoserine dehydrogenase, NAD binding domain ATR_0062 PF00155 Aminotransferase class I and II ATR_0065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATR_0066 PF01197 Ribosomal protein L31 ATR_0069 PF01040 UbiA prenyltransferase family ATR_0072 PF01527 Transposase ATR_0073 PF13276 HTH-like domain ATR_0073 PF00665 Integrase core domain ATR_0073 PF13333 Integrase core domain ATR_0077 PF00005 ABC transporter ATR_0077 PF09383 NIL domain ATR_0078 PF02405 Permease MlaE ATR_0079 PF02664 S-Ribosylhomocysteinase (LuxS) ATR_0080 PF01266 FAD dependent oxidoreductase ATR_0080 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ATR_0081 PF07943 Penicillin-binding protein 5, C-terminal domain ATR_0081 PF00768 D-alanyl-D-alanine carboxypeptidase ATR_0083 PF02310 B12 binding domain ATR_0083 PF02607 B12 binding domain ATR_0083 PF02965 Vitamin B12 dependent methionine synthase, activation domain ATR_0083 PF00809 Pterin binding enzyme ATR_0083 PF02574 Homocysteine S-methyltransferase ATR_0085 PF01063 Amino-transferase class IV ATR_0088 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ATR_0088 PF01502 Phosphoribosyl-AMP cyclohydrolase ATR_0090 PF00572 Ribosomal protein L13 ATR_0091 PF00380 Ribosomal protein S9/S16 ATR_0093 PF03070 TENA/THI-4/PQQC family ATR_0094 PF02110 Hydroxyethylthiazole kinase family ATR_0095 PF02581 Thiamine monophosphate synthase ATR_0095 PF08543 Phosphomethylpyrimidine kinase ATR_0096 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ATR_0097 PF13419 Haloacid dehalogenase-like hydrolase ATR_0099 PF01165 Ribosomal protein S21 ATR_0100 PF01967 MoaC family ATR_0103 PF01975 Survival protein SurE ATR_0104 PF14579 Helix-hairpin-helix motif ATR_0104 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATR_0104 PF02811 PHP domain ATR_0104 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATR_0105 PF01965 DJ-1/PfpI family ATR_0108 PF01368 DHH family ATR_0108 PF02272 DHHA1 domain ATR_0108 PF17768 RecJ OB domain ATR_0108 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ATR_0109 PF00117 Glutamine amidotransferase class-I ATR_0109 PF06418 CTP synthase N-terminus ATR_0110 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ATR_0110 PF12801 4Fe-4S binding domain ATR_0110 PF13746 4Fe-4S dicluster domain ATR_0112 PF01121 Dephospho-CoA kinase ATR_0113 PF17284 Spermidine synthase tetramerisation domain ATR_0114 PF02769 AIR synthase related protein, C-terminal domain ATR_0114 PF00586 AIR synthase related protein, N-terminal domain ATR_0115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATR_0115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ATR_0116 PF09962 Uncharacterized conserved protein (DUF2196) ATR_0117 PF17954 Quercetinase C-terminal cupin domain ATR_0117 PF02678 Pirin ATR_0121 PF00266 Aminotransferase class-V ATR_0122 PF13393 Histidyl-tRNA synthetase ATR_0123 PF00709 Adenylosuccinate synthetase ATR_0125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ATR_0125 PF00117 Glutamine amidotransferase class-I ATR_0130 PF00072 Response regulator receiver domain ATR_0130 PF00486 Transcriptional regulatory protein, C terminal ATR_0132 PF01063 Amino-transferase class IV ATR_0133 PF00425 chorismate binding enzyme ATR_0134 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATR_0134 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATR_0136 PF00202 Aminotransferase class-III ATR_0137 PF01252 Signal peptidase (SPase) II ATR_0138 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATR_0138 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATR_0138 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATR_0138 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATR_0139 PF01649 Ribosomal protein S20 ATR_0140 PF03462 PCRF domain ATR_0140 PF00472 RF-1 domain ATR_0141 PF04608 Phosphatidylglycerophosphatase A ATR_0142 PF00486 Transcriptional regulatory protein, C terminal ATR_0142 PF00072 Response regulator receiver domain ATR_0143 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ATR_0143 PF02542 YgbB family ATR_0145 PF01964 Radical SAM ThiC family ATR_0146 PF01883 Iron-sulfur cluster assembly protein ATR_0146 PF10609 NUBPL iron-transfer P-loop NTPase ATR_0148 PF00380 Ribosomal protein S9/S16 ATR_0149 PF00572 Ribosomal protein L13 ATR_0150 PF16736 Single Cache-like ATR_0150 PF00512 His Kinase A (phospho-acceptor) domain ATR_0150 PF00989 PAS fold ATR_0150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_0151 PF00072 Response regulator receiver domain ATR_0151 PF00486 Transcriptional regulatory protein, C terminal ATR_0154 PF00005 ABC transporter ATR_0155 PF00528 Binding-protein-dependent transport system inner membrane component ATR_0156 PF00528 Binding-protein-dependent transport system inner membrane component ATR_0157 PF00990 Diguanylate cyclase, GGDEF domain ATR_0157 PF03707 Bacterial signalling protein N terminal repeat ATR_0157 PF00563 EAL domain ATR_0158 PF12849 PBP superfamily domain ATR_0159 PF03831 PhnA domain ATR_0159 PF08274 PhnA Zinc-Ribbon ATR_0162 PF17969 L,D-transpeptidase C-terminal domain ATR_0162 PF03734 L,D-transpeptidase catalytic domain ATR_0165 PF01171 PP-loop family ATR_0166 PF18693 TRAM domain ATR_0166 PF00919 Uncharacterized protein family UPF0004 ATR_0166 PF04055 Radical SAM superfamily ATR_0168 PF02569 Pantoate-beta-alanine ligase ATR_0169 PF00528 Binding-protein-dependent transport system inner membrane component ATR_0170 PF01648 4'-phosphopantetheinyl transferase superfamily ATR_0174 PF03616 Sodium/glutamate symporter ATR_0175 PF03652 Holliday junction resolvase ATR_0178 PF00923 Transaldolase/Fructose-6-phosphate aldolase ATR_0179 PF01474 Class-II DAHP synthetase family ATR_0180 PF04055 Radical SAM superfamily ATR_0182 PF00484 Carbonic anhydrase ATR_0183 PF00155 Aminotransferase class I and II ATR_0184 PF02021 Uncharacterised protein family UPF0102 ATR_0186 PF00391 PEP-utilising enzyme, mobile domain ATR_0186 PF02887 Pyruvate kinase, alpha/beta domain ATR_0186 PF00224 Pyruvate kinase, barrel domain ATR_0188 PF00672 HAMP domain ATR_0188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_0188 PF00512 His Kinase A (phospho-acceptor) domain ATR_0188 PF13426 PAS domain ATR_0189 PF00486 Transcriptional regulatory protein, C terminal ATR_0189 PF00072 Response regulator receiver domain ATR_0192 PF02465 Flagellar hook-associated protein 2 N-terminus ATR_0192 PF07195 Flagellar hook-associated protein 2 C-terminus ATR_0194 PF02107 Flagellar L-ring protein ATR_0199 PF01313 Bacterial export proteins, family 3 ATR_0201 PF02119 Flagellar P-ring protein ATR_0202 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATR_0202 PF02154 Flagellar motor switch protein FliM ATR_0204 PF00543 Nitrogen regulatory protein P-II ATR_0205 PF00909 Ammonium Transporter Family ATR_0206 PF12796 Ankyrin repeats (3 copies) ATR_0206 PF13606 Ankyrin repeat ATR_0208 PF02040 Arsenical pump membrane protein ATR_0211 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ATR_0213 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATR_0216 PF02779 Transketolase, pyrimidine binding domain ATR_0216 PF00456 Transketolase, thiamine diphosphate binding domain ATR_0216 PF02780 Transketolase, C-terminal domain ATR_0218 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_0218 PF00512 His Kinase A (phospho-acceptor) domain ATR_0219 PF00672 HAMP domain ATR_0219 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_0219 PF02203 Tar ligand binding domain homologue ATR_0223 PF00364 Biotin-requiring enzyme ATR_0223 PF00682 HMGL-like ATR_0223 PF02436 Conserved carboxylase domain ATR_0229 PF05690 Thiazole biosynthesis protein ThiG ATR_0231 PF01256 Carbohydrate kinase ATR_0231 PF03853 YjeF-related protein N-terminus ATR_0233 PF00814 Glycoprotease family ATR_0236 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ATR_0236 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ATR_0236 PF13288 DXP reductoisomerase C-terminal domain ATR_0242 PF03129 Anticodon binding domain ATR_0242 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATR_0242 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATR_0243 PF00707 Translation initiation factor IF-3, C-terminal domain ATR_0243 PF05198 Translation initiation factor IF-3, N-terminal domain ATR_0244 PF01632 Ribosomal protein L35 ATR_0245 PF00453 Ribosomal protein L20 ATR_0247 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATR_0248 PF12804 MobA-like NTP transferase domain ATR_0249 PF00330 Aconitase family (aconitate hydratase) ATR_0250 PF03960 ArsC family ATR_0251 PF04303 PrpF protein ATR_0252 PF00330 Aconitase family (aconitate hydratase) ATR_0252 PF00694 Aconitase C-terminal domain ATR_0253 PF00285 Citrate synthase, C-terminal domain ATR_0256 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATR_0256 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATR_0258 PF02666 Phosphatidylserine decarboxylase ATR_0259 PF08495 FIST N domain ATR_0259 PF10442 FIST C domain ATR_0259 PF00990 Diguanylate cyclase, GGDEF domain ATR_0259 PF00563 EAL domain ATR_0262 PF08443 RimK-like ATP-grasp domain ATR_0262 PF18030 RimK PreATP-grasp domain ATR_0263 PF00085 Thioredoxin ATR_0264 PF02683 Cytochrome C biogenesis protein transmembrane region ATR_0264 PF11412 Disulphide bond corrector protein DsbC ATR_0264 PF00085 Thioredoxin ATR_0265 PF00939 Sodium:sulfate symporter transmembrane region ATR_0267 PF00877 NlpC/P60 family ATR_0269 PF02545 Maf-like protein ATR_0271 PF00034 Cytochrome c ATR_0271 PF03150 Di-haem cytochrome c peroxidase ATR_0272 PF02780 Transketolase, C-terminal domain ATR_0272 PF02779 Transketolase, pyrimidine binding domain ATR_0272 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ATR_0273 PF00155 Aminotransferase class I and II ATR_0274 PF01817 Chorismate mutase type II ATR_0274 PF01842 ACT domain ATR_0274 PF00800 Prephenate dehydratase ATR_0275 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ATR_0275 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATR_0277 PF00121 Triosephosphate isomerase ATR_0278 PF00162 Phosphoglycerate kinase ATR_0279 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ATR_0279 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATR_0280 PF01467 Cytidylyltransferase-like ATR_0282 PF00750 tRNA synthetases class I (R) ATR_0282 PF05746 DALR anticodon binding domain ATR_0282 PF03485 Arginyl tRNA synthetase N terminal domain ATR_0283 PF02416 mttA/Hcf106 family ATR_0284 PF02416 mttA/Hcf106 family ATR_0285 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ATR_0286 PF01553 Acyltransferase ATR_0289 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ATR_0290 PF01259 SAICAR synthetase ATR_0291 PF13180 PDZ domain ATR_0291 PF03572 Peptidase family S41 ATR_0293 PF15437 Plasminogen-binding protein pgbA C-terminal ATR_0294 PF01142 tRNA pseudouridine synthase D (TruD) ATR_0295 PF01258 Prokaryotic dksA/traR C4-type zinc finger ATR_0297 PF08402 TOBE domain ATR_0297 PF00005 ABC transporter ATR_0303 PF00920 Dehydratase family ATR_0304 PF17820 PDZ domain ATR_0304 PF13180 PDZ domain ATR_0305 PF00072 Response regulator receiver domain ATR_0305 PF00486 Transcriptional regulatory protein, C terminal ATR_0311 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATR_0311 PF01411 tRNA synthetases class II (A) ATR_0311 PF02272 DHHA1 domain ATR_0312 PF00085 Thioredoxin ATR_0313 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATR_0314 PF05173 Dihydrodipicolinate reductase, C-terminus ATR_0314 PF01113 Dihydrodipicolinate reductase, N-terminus ATR_0315 PF13537 Glutamine amidotransferase domain ATR_0315 PF00156 Phosphoribosyl transferase domain ATR_0316 PF04055 Radical SAM superfamily ATR_0316 PF16199 Radical_SAM C-terminal domain ATR_0317 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATR_0317 PF03466 LysR substrate binding domain ATR_0318 PF13361 UvrD-like helicase C-terminal domain ATR_0318 PF00580 UvrD/REP helicase N-terminal domain ATR_0319 PF01509 TruB family pseudouridylate synthase (N terminal domain) ATR_0320 PF00288 GHMP kinases N terminal domain ATR_0321 PF01668 SmpB protein ATR_0322 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATR_0325 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ATR_0325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATR_0331 PF00857 Isochorismatase family ATR_0332 PF01243 Pyridoxamine 5'-phosphate oxidase ATR_0333 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ATR_0333 PF03900 Porphobilinogen deaminase, C-terminal domain ATR_0335 PF12169 DNA polymerase III subunits gamma and tau domain III ATR_0335 PF12170 DNA polymerase III tau subunit V interacting with alpha ATR_0336 PF01177 Asp/Glu/Hydantoin racemase ATR_0338 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ATR_0338 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ATR_0339 PF07497 Rho termination factor, RNA-binding domain ATR_0339 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATR_0339 PF07498 Rho termination factor, N-terminal domain ATR_0340 PF00578 AhpC/TSA family ATR_0340 PF10417 C-terminal domain of 1-Cys peroxiredoxin ATR_0342 PF00334 Nucleoside diphosphate kinase ATR_0344 PF01783 Ribosomal L32p protein family ATR_0345 PF02504 Fatty acid synthesis protein ATR_0346 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATR_0346 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATR_0348 PF00350 Dynamin family ATR_0349 PF00350 Dynamin family ATR_0350 PF13183 4Fe-4S dicluster domain ATR_0350 PF13085 2Fe-2S iron-sulfur cluster binding domain ATR_0351 PF02910 Fumarate reductase flavoprotein C-term ATR_0351 PF00890 FAD binding domain ATR_0352 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATR_0353 PF00361 Proton-conducting membrane transporter ATR_0354 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ATR_0354 PF00361 Proton-conducting membrane transporter ATR_0355 PF00361 Proton-conducting membrane transporter ATR_0355 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATR_0356 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ATR_0357 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ATR_0358 PF12838 4Fe-4S dicluster domain ATR_0359 PF00146 NADH dehydrogenase ATR_0360 PF00384 Molybdopterin oxidoreductase ATR_0360 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ATR_0360 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ATR_0361 PF00285 Citrate synthase, C-terminal domain ATR_0362 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ATR_0362 PF10531 SLBB domain ATR_0362 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ATR_0364 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ATR_0364 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ATR_0365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ATR_0366 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ATR_0367 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ATR_0368 PF06738 Putative threonine/serine exporter ATR_0368 PF12821 Threonine/Serine exporter, ThrE ATR_0369 PF06738 Putative threonine/serine exporter ATR_0370 PF17674 HHH domain ATR_0370 PF00575 S1 RNA binding domain ATR_0370 PF09371 Tex-like protein N-terminal domain ATR_0370 PF16921 Tex protein YqgF-like domain ATR_0373 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ATR_0373 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ATR_0374 PF10145 Phage-related minor tail protein ATR_0374 PF01464 Transglycosylase SLT domain ATR_0374 PF01551 Peptidase family M23 ATR_0376 PF00586 AIR synthase related protein, N-terminal domain ATR_0376 PF02769 AIR synthase related protein, C-terminal domain ATR_0376 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ATR_0377 PF01808 AICARFT/IMPCHase bienzyme ATR_0377 PF02142 MGS-like domain ATR_0378 PF00512 His Kinase A (phospho-acceptor) domain ATR_0378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_0378 PF00989 PAS fold ATR_0378 PF08447 PAS fold ATR_0379 PF00202 Aminotransferase class-III ATR_0380 PF01641 SelR domain ATR_0381 PF01625 Peptide methionine sulfoxide reductase ATR_0385 PF03976 Polyphosphate kinase 2 (PPK2) ATR_0387 PF01264 Chorismate synthase ATR_0388 PF00035 Double-stranded RNA binding motif ATR_0388 PF14622 Ribonuclease-III-like ATR_0390 PF16730 DnaG-primase C-terminal, helicase-binding domain ATR_0390 PF13662 Toprim domain ATR_0390 PF08275 DNA primase catalytic core, N-terminal domain ATR_0390 PF01807 CHC2 zinc finger ATR_0392 PF00829 Ribosomal prokaryotic L21 protein ATR_0393 PF01016 Ribosomal L27 protein ATR_0394 PF01018 GTP1/OBG ATR_0394 PF01926 50S ribosome-binding GTPase ATR_0395 PF00696 Amino acid kinase family ATR_0396 PF02911 Formyl transferase, C-terminal domain ATR_0396 PF00551 Formyl transferase ATR_0400 PF13614 AAA domain ATR_0401 PF17762 HTH domain found in ParB protein ATR_0401 PF02195 ParB-like nuclease domain ATR_0403 PF00430 ATP synthase B/B' CF(0) ATR_0404 PF00213 ATP synthase delta (OSCP) subunit ATR_0405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATR_0405 PF00306 ATP synthase alpha/beta chain, C terminal domain ATR_0405 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATR_0406 PF00231 ATP synthase ATR_0407 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATR_0407 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATR_0408 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATR_0409 PF01618 MotA/TolQ/ExbB proton channel family ATR_0410 PF02472 Biopolymer transport protein ExbD/TolR ATR_0412 PF04052 TolB amino-terminal domain ATR_0415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATR_0416 PF00698 Acyl transferase domain ATR_0417 PF01048 Phosphorylase superfamily ATR_0418 PF10415 Fumarase C C-terminus ATR_0418 PF00206 Lyase ATR_0420 PF02810 SEC-C motif ATR_0421 PF01368 DHH family ATR_0421 PF02833 DHHA2 domain ATR_0422 PF00924 Mechanosensitive ion channel ATR_0424 PF00682 HMGL-like ATR_0424 PF08502 LeuA allosteric (dimerisation) domain ATR_0425 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATR_0425 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATR_0427 PF00491 Arginase family ATR_0428 PF00360 Phytochrome region ATR_0428 PF00990 Diguanylate cyclase, GGDEF domain ATR_0428 PF00563 EAL domain ATR_0428 PF01590 GAF domain ATR_0430 PF04073 Aminoacyl-tRNA editing domain ATR_0436 PF04403 Paraquat-inducible protein A ATR_0438 PF00199 Catalase ATR_0438 PF06628 Catalase-related immune-responsive ATR_0439 PF00023 Ankyrin repeat ATR_0439 PF12796 Ankyrin repeats (3 copies) ATR_0441 PF00183 Hsp90 protein ATR_0444 PF00271 Helicase conserved C-terminal domain ATR_0444 PF03880 DbpA RNA binding domain ATR_0444 PF00270 DEAD/DEAH box helicase ATR_0445 PF03707 Bacterial signalling protein N terminal repeat ATR_0445 PF00990 Diguanylate cyclase, GGDEF domain ATR_0445 PF00563 EAL domain ATR_0447 PF01545 Cation efflux family ATR_0447 PF16916 Dimerisation domain of Zinc Transporter ATR_0448 PF01243 Pyridoxamine 5'-phosphate oxidase ATR_0448 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ATR_0449 PF00990 Diguanylate cyclase, GGDEF domain ATR_0449 PF00563 EAL domain ATR_0449 PF08495 FIST N domain ATR_0449 PF10442 FIST C domain ATR_0462 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment ATR_0462 PF01297 Zinc-uptake complex component A periplasmic ATR_0464 PF06965 Na+/H+ antiporter 1 ATR_0473 PF00696 Amino acid kinase family ATR_0474 PF01192 RNA polymerase Rpb6 ATR_0475 PF13291 ACT domain ATR_0475 PF04607 Region found in RelA / SpoT proteins ATR_0475 PF02824 TGS domain ATR_0476 PF00579 tRNA synthetases class I (W and Y) ATR_0476 PF01479 S4 domain ATR_0478 PF01520 N-acetylmuramoyl-L-alanine amidase ATR_0481 PF01195 Peptidyl-tRNA hydrolase ATR_0482 PF14693 Ribosomal protein TL5, C-terminal domain ATR_0482 PF01386 Ribosomal L25p family ATR_0483 PF01384 Phosphate transporter family ATR_0485 PF00793 DAHP synthetase I family ATR_0486 PF00892 EamA-like transporter family ATR_0487 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATR_0489 PF03631 Virulence factor BrkB ATR_0490 PF02913 FAD linked oxidases, C-terminal domain ATR_0490 PF01565 FAD binding domain ATR_0492 PF00578 AhpC/TSA family ATR_0493 PF13649 Methyltransferase domain ATR_0494 PF01687 Riboflavin kinase ATR_0494 PF06574 FAD synthetase ATR_0495 PF01728 FtsJ-like methyltransferase ATR_0495 PF01479 S4 domain ATR_0497 PF09186 Domain of unknown function (DUF1949) ATR_0497 PF01205 Uncharacterized protein family UPF0029 ATR_0498 PF00263 Bacterial type II and III secretion system protein ATR_0498 PF03958 Bacterial type II/III secretion system short domain ATR_0501 PF00459 Inositol monophosphatase family ATR_0502 PF00037 4Fe-4S binding domain ATR_0504 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ATR_0507 PF01219 Prokaryotic diacylglycerol kinase ATR_0508 PF00884 Sulfatase ATR_0509 PF00483 Nucleotidyl transferase ATR_0510 PF16363 GDP-mannose 4,6 dehydratase ATR_0511 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATR_0513 PF01467 Cytidylyltransferase-like ATR_0516 PF01501 Glycosyl transferase family 8 ATR_0516 PF00535 Glycosyl transferase family 2 ATR_0517 PF00884 Sulfatase ATR_0520 PF00535 Glycosyl transferase family 2 ATR_0524 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ATR_0525 PF08019 Phosphoethanolamine transferase EptA/EptB ATR_0525 PF00884 Sulfatase ATR_0527 PF00884 Sulfatase ATR_0528 PF13580 SIS domain ATR_0529 PF00294 pfkB family carbohydrate kinase ATR_0529 PF01467 Cytidylyltransferase-like ATR_0530 PF01370 NAD dependent epimerase/dehydratase family ATR_0531 PF08645 Polynucleotide kinase 3 phosphatase ATR_0533 PF00830 Ribosomal L28 family ATR_0535 PF01960 ArgJ family ATR_0537 PF03989 DNA gyrase C-terminal domain, beta-propeller ATR_0537 PF00521 DNA gyrase/topoisomerase IV, subunit A ATR_0538 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATR_0538 PF02774 Semialdehyde dehydrogenase, dimerisation domain ATR_0540 PF01208 Uroporphyrinogen decarboxylase (URO-D) ATR_0549 PF00563 EAL domain ATR_0549 PF05231 MASE1 ATR_0550 PF00403 Heavy-metal-associated domain ATR_0552 PF00034 Cytochrome c ATR_0554 PF13333 Integrase core domain ATR_0554 PF13276 HTH-like domain ATR_0554 PF00665 Integrase core domain ATR_0555 PF01527 Transposase ATR_0556 PF00005 ABC transporter ATR_0557 PF00528 Binding-protein-dependent transport system inner membrane component ATR_0558 PF00528 Binding-protein-dependent transport system inner membrane component ATR_0559 PF12849 PBP superfamily domain ATR_0560 PF01965 DJ-1/PfpI family ATR_0563 PF07720 Tetratricopeptide repeat ATR_0563 PF01435 Peptidase family M48 ATR_0578 PF01327 Polypeptide deformylase ATR_0579 PF00574 Clp protease ATR_0580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATR_0580 PF05698 Bacterial trigger factor protein (TF) C-terminus ATR_0580 PF05697 Bacterial trigger factor protein (TF) ATR_0581 PF03976 Polyphosphate kinase 2 (PPK2) ATR_0582 PF03976 Polyphosphate kinase 2 (PPK2) ATR_0583 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ATR_0584 PF16653 Saccharopine dehydrogenase C-terminal domain ATR_0584 PF03435 Saccharopine dehydrogenase NADP binding domain ATR_0588 PF01527 Transposase ATR_0589 PF00665 Integrase core domain ATR_0589 PF13333 Integrase core domain ATR_0589 PF13276 HTH-like domain ATR_0592 PF07669 Eco57I restriction-modification methylase ATR_0593 PF02384 N-6 DNA Methylase ATR_0593 PF07669 Eco57I restriction-modification methylase ATR_0600 PF00004 ATPase family associated with various cellular activities (AAA) ATR_0600 PF07724 AAA domain (Cdc48 subfamily) ATR_0600 PF17871 AAA lid domain ATR_0600 PF10431 C-terminal, D2-small domain, of ClpB protein ATR_0601 PF00665 Integrase core domain ATR_0606 PF02568 Thiamine biosynthesis protein (ThiI) ATR_0606 PF02926 THUMP domain ATR_0607 PF03372 Endonuclease/Exonuclease/phosphatase family ATR_0611 PF04101 Glycosyltransferase family 28 C-terminal domain ATR_0611 PF03033 Glycosyltransferase family 28 N-terminal domain ATR_0612 PF01098 Cell cycle protein ATR_0613 PF03793 PASTA domain ATR_0613 PF03717 Penicillin-binding Protein dimerisation domain ATR_0613 PF00905 Penicillin binding protein transpeptidase domain ATR_0614 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ATR_0615 PF03150 Di-haem cytochrome c peroxidase ATR_0616 PF04116 Fatty acid hydroxylase superfamily ATR_0621 PF00137 ATP synthase subunit C ATR_0624 PF00005 ABC transporter ATR_0625 PF00528 Binding-protein-dependent transport system inner membrane component ATR_0626 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATR_0626 PF00005 ABC transporter ATR_0627 PF00762 Ferrochelatase ATR_0633 PF17805 AsnC-like ligand binding domain ATR_0634 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATR_0634 PF14824 Sirohaem biosynthesis protein central ATR_0634 PF10414 Sirohaem synthase dimerisation region ATR_0636 PF10414 Sirohaem synthase dimerisation region ATR_0636 PF14824 Sirohaem biosynthesis protein central ATR_0636 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATR_0638 PF04055 Radical SAM superfamily ATR_0638 PF13186 Iron-sulfur cluster-binding domain ATR_0642 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATR_0643 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATR_0644 PF00034 Cytochrome c ATR_0647 PF01875 Memo-like protein ATR_0648 PF02698 DUF218 domain ATR_0649 PF01527 Transposase ATR_0650 PF00665 Integrase core domain ATR_0650 PF13276 HTH-like domain ATR_0650 PF13333 Integrase core domain ATR_0652 PF00005 ABC transporter ATR_0653 PF00950 ABC 3 transport family ATR_0654 PF17783 CvfB-like winged helix domain ATR_0654 PF13509 S1 domain ATR_0655 PF08534 Redoxin ATR_0656 PF08238 Sel1 repeat ATR_0659 PF08264 Anticodon-binding domain of tRNA ATR_0659 PF00133 tRNA synthetases class I (I, L, M and V) ATR_0659 PF10458 Valyl tRNA synthetase tRNA binding arm ATR_0661 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_0661 PF08447 PAS fold ATR_0661 PF13426 PAS domain ATR_0663 PF07690 Major Facilitator Superfamily ATR_0664 PF01725 Ham1 family ATR_0667 PF14748 Pyrroline-5-carboxylate reductase dimerisation ATR_0667 PF03807 NADP oxidoreductase coenzyme F420-dependent ATR_0668 PF13525 Outer membrane lipoprotein ATR_0669 PF00004 ATPase family associated with various cellular activities (AAA) ATR_0669 PF05362 Lon protease (S16) C-terminal proteolytic domain ATR_0669 PF02190 ATP-dependent protease La (LON) substrate-binding domain ATR_0674 PF02785 Biotin carboxylase C-terminal domain ATR_0674 PF00289 Biotin carboxylase, N-terminal domain ATR_0674 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATR_0675 PF01883 Iron-sulfur cluster assembly protein ATR_0676 PF02657 Fe-S metabolism associated domain ATR_0677 PF00266 Aminotransferase class-V ATR_0678 PF01458 Uncharacterized protein family (UPF0051) ATR_0679 PF00005 ABC transporter ATR_0680 PF01458 Uncharacterized protein family (UPF0051) ATR_0681 PF04324 BFD-like [2Fe-2S] binding domain ATR_0681 PF01106 NifU-like domain ATR_0681 PF01592 NifU-like N terminal domain ATR_0682 PF03448 MgtE intracellular N domain ATR_0682 PF00571 CBS domain ATR_0682 PF01769 Divalent cation transporter ATR_0683 PF07694 5TMR of 5TMR-LYT ATR_0683 PF00990 Diguanylate cyclase, GGDEF domain ATR_0684 PF14698 Argininosuccinate lyase C-terminal ATR_0684 PF00206 Lyase ATR_0685 PF00271 Helicase conserved C-terminal domain ATR_0685 PF04851 Type III restriction enzyme, res subunit ATR_0685 PF02151 UvrB/uvrC motif ATR_0685 PF12344 Ultra-violet resistance protein B ATR_0685 PF17757 UvrB interaction domain ATR_0687 PF01272 Transcription elongation factor, GreA/GreB, C-term ATR_0687 PF03449 Transcription elongation factor, N-terminal ATR_0688 PF00899 ThiF family ATR_0689 PF00072 Response regulator receiver domain ATR_0689 PF01584 CheW-like domain ATR_0691 PF00589 Phage integrase family ATR_0691 PF14659 Phage integrase, N-terminal SAM-like domain ATR_0705 PF00145 C-5 cytosine-specific DNA methylase ATR_0706 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_0706 PF02203 Tar ligand binding domain homologue ATR_0706 PF00672 HAMP domain ATR_0715 PF02661 Fic/DOC family ATR_0717 PF01131 DNA topoisomerase ATR_0717 PF01751 Toprim domain ATR_0729 PF02534 Type IV secretory system Conjugative DNA transfer ATR_0730 PF00437 Type II/IV secretion system protein ATR_0731 PF03743 Bacterial conjugation TrbI-like protein ATR_0732 PF03524 Conjugal transfer protein ATR_0740 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ATR_0743 PF00730 HhH-GPD superfamily base excision DNA repair protein ATR_0743 PF00633 Helix-hairpin-helix motif ATR_0743 PF10576 Iron-sulfur binding domain of endonuclease III ATR_0744 PF00586 AIR synthase related protein, N-terminal domain ATR_0744 PF02769 AIR synthase related protein, C-terminal domain ATR_0745 PF01142 tRNA pseudouridine synthase D (TruD) ATR_0747 PF00672 HAMP domain ATR_0747 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_0747 PF02203 Tar ligand binding domain homologue ATR_0748 PF07499 RuvA, C-terminal domain ATR_0748 PF01330 RuvA N terminal domain ATR_0749 PF07478 D-ala D-ala ligase C-terminus ATR_0749 PF01820 D-ala D-ala ligase N-terminus ATR_0751 PF08245 Mur ligase middle domain ATR_0751 PF02875 Mur ligase family, glutamate ligase domain ATR_0754 PF00338 Ribosomal protein S10p/S20e ATR_0755 PF00297 Ribosomal protein L3 ATR_0756 PF00573 Ribosomal protein L4/L1 family ATR_0757 PF00276 Ribosomal protein L23 ATR_0758 PF00181 Ribosomal Proteins L2, RNA binding domain ATR_0758 PF03947 Ribosomal Proteins L2, C-terminal domain ATR_0759 PF00203 Ribosomal protein S19 ATR_0760 PF00237 Ribosomal protein L22p/L17e ATR_0761 PF07650 KH domain ATR_0761 PF00189 Ribosomal protein S3, C-terminal domain ATR_0762 PF00252 Ribosomal protein L16p/L10e ATR_0763 PF00831 Ribosomal L29 protein ATR_0764 PF00366 Ribosomal protein S17 ATR_0765 PF00238 Ribosomal protein L14p/L23e ATR_0766 PF00467 KOW motif ATR_0766 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ATR_0767 PF00281 Ribosomal protein L5 ATR_0767 PF00673 ribosomal L5P family C-terminus ATR_0768 PF00253 Ribosomal protein S14p/S29e ATR_0769 PF00410 Ribosomal protein S8 ATR_0770 PF00347 Ribosomal protein L6 ATR_0771 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ATR_0772 PF00333 Ribosomal protein S5, N-terminal domain ATR_0772 PF03719 Ribosomal protein S5, C-terminal domain ATR_0773 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ATR_0774 PF00344 SecY translocase ATR_0775 PF00557 Metallopeptidase family M24 ATR_0776 PF01176 Translation initiation factor 1A / IF-1 ATR_0777 PF03167 Uracil DNA glycosylase superfamily ATR_0779 PF00152 tRNA synthetases class II (D, K and N) ATR_0779 PF01336 OB-fold nucleic acid binding domain ATR_0779 PF02938 GAD domain ATR_0780 PF04055 Radical SAM superfamily ATR_0780 PF08497 Radical SAM N-terminal ATR_0781 PF05191 Adenylate kinase, active site lid ATR_0785 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ATR_0785 PF02805 Metal binding domain of Ada ATR_0785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ATR_0785 PF12833 Helix-turn-helix domain ATR_0786 PF00464 Serine hydroxymethyltransferase ATR_0789 PF00571 CBS domain ATR_0789 PF03471 Transporter associated domain ATR_0794 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATR_0794 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATR_0795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATR_0795 PF02817 e3 binding domain ATR_0795 PF00364 Biotin-requiring enzyme ATR_0796 PF00456 Transketolase, thiamine diphosphate binding domain ATR_0796 PF17831 Pyruvate dehydrogenase E1 component middle domain ATR_0797 PF10437 Bacterial lipoate protein ligase C-terminus ATR_0797 PF03099 Biotin/lipoate A/B protein ligase family ATR_0798 PF04055 Radical SAM superfamily ATR_0800 PF00990 Diguanylate cyclase, GGDEF domain ATR_0800 PF08448 PAS fold ATR_0801 PF12848 ABC transporter ATR_0801 PF00005 ABC transporter ATR_0801 PF16326 ABC transporter C-terminal domain ATR_0802 PF03473 MOSC domain ATR_0802 PF03475 3-alpha domain ATR_0804 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATR_0804 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ATR_0804 PF10518 TAT (twin-arginine translocation) pathway signal sequence ATR_0806 PF00817 impB/mucB/samB family ATR_0806 PF11799 impB/mucB/samB family C-terminal domain ATR_0806 PF11798 IMS family HHH motif ATR_0808 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ATR_0808 PF13538 UvrD-like helicase C-terminal domain ATR_0808 PF14490 Helix-hairpin-helix containing domain ATR_0810 PF02491 SHS2 domain inserted in FTSA ATR_0811 PF12327 FtsZ family, C-terminal domain ATR_0811 PF00091 Tubulin/FtsZ family, GTPase domain ATR_0814 PF00561 alpha/beta hydrolase fold ATR_0815 PF02609 Exonuclease VII small subunit ATR_0816 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATR_0816 PF02142 MGS-like domain ATR_0816 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATR_0819 PF00490 Delta-aminolevulinic acid dehydratase ATR_0820 PF00925 GTP cyclohydrolase II ATR_0821 PF02527 rRNA small subunit methyltransferase G ATR_0825 PF02092 Glycyl-tRNA synthetase beta subunit ATR_0826 PF01068 ATP dependent DNA ligase domain ATR_0826 PF14743 DNA ligase OB-like domain ATR_0827 PF00140 Sigma-70 factor, region 1.2 ATR_0827 PF04542 Sigma-70 region 2 ATR_0827 PF04539 Sigma-70 region 3 ATR_0827 PF04545 Sigma-70, region 4 ATR_0828 PF00694 Aconitase C-terminal domain ATR_0829 PF00180 Isocitrate/isopropylmalate dehydrogenase ATR_0832 PF00444 Ribosomal protein L36 ATR_0833 PF00416 Ribosomal protein S13/S18 ATR_0834 PF00411 Ribosomal protein S11 ATR_0835 PF00163 Ribosomal protein S4/S9 N-terminal domain ATR_0835 PF01479 S4 domain ATR_0836 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ATR_0836 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ATR_0836 PF01000 RNA polymerase Rpb3/RpoA insert domain ATR_0837 PF01196 Ribosomal protein L17 ATR_0838 PF01425 Amidase ATR_0839 PF00571 CBS domain ATR_0839 PF00478 IMP dehydrogenase / GMP reductase domain ATR_0840 PF01594 AI-2E family transporter ATR_0841 PF17864 RuvB AAA lid domain ATR_0841 PF05491 RuvB C-terminal winged helix domain ATR_0841 PF05496 Holliday junction DNA helicase RuvB P-loop domain ATR_0842 PF02548 Ketopantoate hydroxymethyltransferase ATR_0843 PF00290 Tryptophan synthase alpha chain ATR_0844 PF04376 Arginine-tRNA-protein transferase, N terminus ATR_0844 PF04377 Arginine-tRNA-protein transferase, C terminus ATR_0846 PF02421 Ferrous iron transport protein B ATR_0846 PF07670 Nucleoside recognition ATR_0846 PF07664 Ferrous iron transport protein B C terminus ATR_0848 PF01475 Ferric uptake regulator family ATR_0849 PF00764 Arginosuccinate synthase ATR_0850 PF00528 Binding-protein-dependent transport system inner membrane component ATR_0850 PF12911 N-terminal TM domain of oligopeptide transport permease C ATR_0852 PF01966 HD domain ATR_0852 PF00013 KH domain ATR_0852 PF12072 Domain of unknown function (DUF3552) ATR_0853 PF01812 5-formyltetrahydrofolate cyclo-ligase family ATR_0855 PF00448 SRP54-type protein, GTPase domain ATR_0859 PF02525 Flavodoxin-like fold ATR_0860 PF00881 Nitroreductase family ATR_0862 PF12848 ABC transporter ATR_0862 PF00005 ABC transporter ATR_0863 PF03061 Thioesterase superfamily ATR_0864 PF00533 BRCA1 C Terminus (BRCT) domain ATR_0864 PF01653 NAD-dependent DNA ligase adenylation domain ATR_0864 PF03120 NAD-dependent DNA ligase OB-fold domain ATR_0864 PF12826 Helix-hairpin-helix motif ATR_0865 PF13276 HTH-like domain ATR_0865 PF00665 Integrase core domain ATR_0865 PF13333 Integrase core domain ATR_0866 PF01527 Transposase ATR_0868 PF03738 Glutathionylspermidine synthase preATP-grasp ATR_0871 PF00691 OmpA family ATR_0871 PF05736 OprF membrane domain ATR_0872 PF03412 Peptidase C39 family ATR_0872 PF00005 ABC transporter ATR_0872 PF00664 ABC transporter transmembrane region ATR_0873 PF13533 Biotin-lipoyl like ATR_0874 PF00196 Bacterial regulatory proteins, luxR family ATR_0874 PF17874 MalT-like TPR region ATR_0875 PF01293 Phosphoenolpyruvate carboxykinase ATR_0878 PF00133 tRNA synthetases class I (I, L, M and V) ATR_0878 PF09334 tRNA synthetases class I (M) ATR_0878 PF01588 Putative tRNA binding domain ATR_0880 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ATR_0885 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATR_0886 PF05193 Peptidase M16 inactive domain ATR_0887 PF04055 Radical SAM superfamily ATR_0888 PF01103 Surface antigen ATR_0888 PF07244 Surface antigen variable number repeat ATR_0889 PF01842 ACT domain ATR_0889 PF02153 Prephenate dehydrogenase ATR_0891 PF00009 Elongation factor Tu GTP binding domain ATR_0891 PF03144 Elongation factor Tu domain 2 ATR_0891 PF09105 Elongation factor SelB, winged helix ATR_0891 PF09106 Elongation factor SelB, winged helix ATR_0891 PF09107 Elongation factor SelB, winged helix ATR_0892 PF03841 L-seryl-tRNA selenium transferase ATR_0894 PF02253 Phospholipase A1 ATR_0895 PF00834 Ribulose-phosphate 3 epimerase family ATR_0896 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ATR_0897 PF00929 Exonuclease ATR_0897 PF02811 PHP domain ATR_0897 PF14579 Helix-hairpin-helix motif ATR_0897 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATR_0897 PF11490 DNA polymerase III polC-type N-terminus II ATR_0897 PF14480 DNA polymerase III polC-type N-terminus I ATR_0897 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATR_0898 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATR_0899 PF00005 ABC transporter ATR_0899 PF17755 UvrA DNA-binding domain ATR_0899 PF17760 UvrA interaction domain ATR_0900 PF00563 EAL domain ATR_0900 PF08495 FIST N domain ATR_0900 PF10442 FIST C domain ATR_0900 PF00990 Diguanylate cyclase, GGDEF domain ATR_0902 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATR_0903 PF00561 alpha/beta hydrolase fold ATR_0906 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ATR_0907 PF00117 Glutamine amidotransferase class-I ATR_0907 PF00958 GMP synthase C terminal domain ATR_0907 PF02540 NAD synthase ATR_0908 PF00890 FAD binding domain ATR_0908 PF02910 Fumarate reductase flavoprotein C-term ATR_0911 PF01863 Protein of unknown function DUF45 ATR_0912 PF00155 Aminotransferase class I and II ATR_0913 PF01966 HD domain ATR_0914 PF00211 Adenylate and Guanylate cyclase catalytic domain ATR_0919 PF03062 MBOAT, membrane-bound O-acyltransferase family ATR_0921 PF02254 TrkA-N domain ATR_0921 PF00999 Sodium/hydrogen exchanger family ATR_0923 PF02600 Disulfide bond formation protein DsbB ATR_0926 PF08534 Redoxin ATR_0927 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ATR_0927 PF18793 Nitrous oxide reductase propeller repeat 2 ATR_0927 PF18764 Nitrous oxide reductase propeller repeat ATR_0930 PF12838 4Fe-4S dicluster domain ATR_0930 PF12800 4Fe-4S binding domain ATR_0933 PF12801 4Fe-4S binding domain ATR_0933 PF00037 4Fe-4S binding domain ATR_0934 PF00005 ABC transporter ATR_0938 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ATR_0939 PF01479 S4 domain ATR_0939 PF00849 RNA pseudouridylate synthase ATR_0940 PF13419 Haloacid dehalogenase-like hydrolase ATR_0944 PF07715 TonB-dependent Receptor Plug Domain ATR_0944 PF00593 TonB dependent receptor ATR_0945 PF01497 Periplasmic binding protein ATR_0946 PF00005 ABC transporter ATR_0947 PF01032 FecCD transport family ATR_0951 PF01761 3-dehydroquinate synthase ATR_0953 PF04055 Radical SAM superfamily ATR_0953 PF00919 Uncharacterized protein family UPF0004 ATR_0954 PF00004 ATPase family associated with various cellular activities (AAA) ATR_0954 PF17862 AAA+ lid domain ATR_0954 PF06480 FtsH Extracellular ATR_0954 PF01434 Peptidase family M41 ATR_0956 PF00994 Probable molybdopterin binding domain ATR_0957 PF08338 Domain of unknown function (DUF1731) ATR_0957 PF01370 NAD dependent epimerase/dehydratase family ATR_0958 PF00875 DNA photolyase ATR_0958 PF03441 FAD binding domain of DNA photolyase ATR_0960 PF12704 MacB-like periplasmic core domain ATR_0960 PF02687 FtsX-like permease family ATR_0961 PF07516 SecA Wing and Scaffold domain ATR_0961 PF02810 SEC-C motif ATR_0961 PF01043 SecA preprotein cross-linking domain ATR_0961 PF07517 SecA DEAD-like domain ATR_0961 PF00271 Helicase conserved C-terminal domain ATR_0962 PF03548 Outer membrane lipoprotein carrier protein LolA ATR_0964 PF07687 Peptidase dimerisation domain ATR_0964 PF01546 Peptidase family M20/M25/M40 ATR_0965 PF01578 Cytochrome C assembly protein ATR_0965 PF05140 ResB-like family ATR_0968 PF08003 Protein of unknown function (DUF1698) ATR_0969 PF00990 Diguanylate cyclase, GGDEF domain ATR_0969 PF01590 GAF domain ATR_0969 PF00563 EAL domain ATR_0969 PF00360 Phytochrome region ATR_0971 PF00753 Metallo-beta-lactamase superfamily ATR_0975 PF00226 DnaJ domain ATR_0975 PF01556 DnaJ C terminal domain ATR_0975 PF00684 DnaJ central domain ATR_0976 PF00589 Phage integrase family ATR_0976 PF18644 Phage integrase SAM-like domain ATR_0977 PF00072 Response regulator receiver domain ATR_0977 PF01339 CheB methylesterase ATR_0978 PF03975 CheD chemotactic sensory transduction ATR_0979 PF03705 CheR methyltransferase, all-alpha domain ATR_0979 PF01739 CheR methyltransferase, SAM binding domain ATR_0980 PF01584 CheW-like domain ATR_0980 PF09078 CheY binding ATR_0980 PF02895 Signal transducing histidine kinase, homodimeric domain ATR_0980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_0980 PF01627 Hpt domain ATR_0981 PF00072 Response regulator receiver domain ATR_0982 PF03725 3' exoribonuclease family, domain 2 ATR_0982 PF00575 S1 RNA binding domain ATR_0982 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ATR_0982 PF00013 KH domain ATR_0982 PF01138 3' exoribonuclease family, domain 1 ATR_0984 PF03968 OstA-like protein ATR_0984 PF04453 LPS transport system D ATR_0986 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATR_0986 PF02843 Phosphoribosylglycinamide synthetase, C domain ATR_0986 PF02844 Phosphoribosylglycinamide synthetase, N domain ATR_0988 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ATR_0988 PF01926 50S ribosome-binding GTPase ATR_0989 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ATR_0989 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ATR_0990 PF01580 FtsK/SpoIIIE family ATR_0990 PF17854 FtsK alpha domain ATR_0990 PF09397 Ftsk gamma domain ATR_0991 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ATR_0991 PF00132 Bacterial transferase hexapeptide (six repeats) ATR_0992 PF10369 Small subunit of acetolactate synthase ATR_0993 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATR_0993 PF00205 Thiamine pyrophosphate enzyme, central domain ATR_0993 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATR_0995 PF03630 Fumble ATR_0996 PF01066 CDP-alcohol phosphatidyltransferase ATR_1000 PF01171 PP-loop family ATR_1002 PF00994 Probable molybdopterin binding domain ATR_1002 PF03454 MoeA C-terminal region (domain IV) ATR_1002 PF03453 MoeA N-terminal region (domain I and II) ATR_1004 PF04228 Putative neutral zinc metallopeptidase ATR_1005 PF02646 RmuC family ATR_1006 PF01435 Peptidase family M48 ATR_1006 PF16491 CAAX prenyl protease N-terminal, five membrane helices ATR_1008 PF03061 Thioesterase superfamily ATR_1011 PF01432 Peptidase family M3 ATR_1012 PF05175 Methyltransferase small domain ATR_1012 PF17827 PrmC N-terminal domain ATR_1013 PF04055 Radical SAM superfamily ATR_1013 PF06969 HemN C-terminal domain ATR_1014 PF00293 NUDIX domain ATR_1015 PF00696 Amino acid kinase family ATR_1015 PF01842 ACT domain ATR_1015 PF13840 ACT domain ATR_1018 PF00809 Pterin binding enzyme ATR_1021 PF03477 ATP cone domain ATR_1021 PF02867 Ribonucleotide reductase, barrel domain ATR_1021 PF00317 Ribonucleotide reductase, all-alpha domain ATR_1022 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATR_1022 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATR_1023 PF04055 Radical SAM superfamily ATR_1023 PF06969 HemN C-terminal domain ATR_1025 PF01113 Dihydrodipicolinate reductase, N-terminus ATR_1025 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ATR_1026 PF00005 ABC transporter ATR_1028 PF00571 CBS domain ATR_1028 PF03471 Transporter associated domain ATR_1028 PF01595 Cyclin M transmembrane N-terminal domain ATR_1029 PF00488 MutS domain V ATR_1029 PF01713 Smr domain ATR_1032 PF03971 Monomeric isocitrate dehydrogenase ATR_1033 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ATR_1033 PF00056 lactate/malate dehydrogenase, NAD binding domain ATR_1038 PF01795 MraW methylase family ATR_1040 PF00216 Bacterial DNA-binding protein ATR_1044 PF00072 Response regulator receiver domain ATR_1046 PF08447 PAS fold ATR_1046 PF08448 PAS fold ATR_1046 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1047 PF00226 DnaJ domain ATR_1047 PF01556 DnaJ C terminal domain ATR_1048 PF13411 MerR HTH family regulatory protein ATR_1049 PF03741 Integral membrane protein TerC family ATR_1050 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ATR_1051 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATR_1052 PF02540 NAD synthase ATR_1055 PF00226 DnaJ domain ATR_1055 PF05099 Tellurite resistance protein TerB ATR_1057 PF02547 Queuosine biosynthesis protein ATR_1058 PF00902 Sec-independent protein translocase protein (TatC) ATR_1059 PF02416 mttA/Hcf106 family ATR_1060 PF00248 Aldo/keto reductase family ATR_1065 PF02132 RecR protein ATR_1065 PF13662 Toprim domain ATR_1066 PF00005 ABC transporter ATR_1066 PF16326 ABC transporter C-terminal domain ATR_1066 PF12848 ABC transporter ATR_1068 PF04225 Opacity-associated protein A LysM-like domain ATR_1068 PF01551 Peptidase family M23 ATR_1070 PF00990 Diguanylate cyclase, GGDEF domain ATR_1071 PF01361 Tautomerase enzyme ATR_1072 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATR_1072 PF03466 LysR substrate binding domain ATR_1073 PF00218 Indole-3-glycerol phosphate synthase ATR_1075 PF03692 Putative zinc- or iron-chelating domain ATR_1076 PF05175 Methyltransferase small domain ATR_1078 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ATR_1078 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ATR_1078 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ATR_1079 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATR_1081 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ATR_1081 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ATR_1083 PF01367 5'-3' exonuclease, C-terminal SAM fold ATR_1083 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ATR_1083 PF00476 DNA polymerase family A ATR_1084 PF18073 Rubredoxin metal binding domain ATR_1086 PF02130 Uncharacterized protein family UPF0054 ATR_1087 PF01475 Ferric uptake regulator family ATR_1089 PF03023 Lipid II flippase MurJ ATR_1090 PF00664 ABC transporter transmembrane region ATR_1090 PF00005 ABC transporter ATR_1091 PF01180 Dihydroorotate dehydrogenase ATR_1093 PF00701 Dihydrodipicolinate synthetase family ATR_1095 PF01066 CDP-alcohol phosphatidyltransferase ATR_1096 PF02163 Peptidase family M50 ATR_1096 PF17820 PDZ domain ATR_1097 PF01168 Alanine racemase, N-terminal domain ATR_1098 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1098 PF00672 HAMP domain ATR_1098 PF02203 Tar ligand binding domain homologue ATR_1099 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1099 PF08447 PAS fold ATR_1101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1102 PF00072 Response regulator receiver domain ATR_1102 PF00486 Transcriptional regulatory protein, C terminal ATR_1104 PF00005 ABC transporter ATR_1104 PF00664 ABC transporter transmembrane region ATR_1107 PF12823 Domain of unknown function (DUF3817) ATR_1109 PF00994 Probable molybdopterin binding domain ATR_1109 PF03454 MoeA C-terminal region (domain IV) ATR_1109 PF03453 MoeA N-terminal region (domain I and II) ATR_1110 PF00266 Aminotransferase class-V ATR_1111 PF02634 FdhD/NarQ family ATR_1113 PF13247 4Fe-4S dicluster domain ATR_1119 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1119 PF00512 His Kinase A (phospho-acceptor) domain ATR_1120 PF00158 Sigma-54 interaction domain ATR_1120 PF00072 Response regulator receiver domain ATR_1121 PF00586 AIR synthase related protein, N-terminal domain ATR_1121 PF02769 AIR synthase related protein, C-terminal domain ATR_1122 PF13361 UvrD-like helicase C-terminal domain ATR_1122 PF00580 UvrD/REP helicase N-terminal domain ATR_1123 PF00999 Sodium/hydrogen exchanger family ATR_1123 PF02080 TrkA-C domain ATR_1123 PF02254 TrkA-N domain ATR_1124 PF00174 Oxidoreductase molybdopterin binding domain ATR_1125 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATR_1139 PF00155 Aminotransferase class I and II ATR_1140 PF02203 Tar ligand binding domain homologue ATR_1140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1140 PF00672 HAMP domain ATR_1141 PF00842 Alanine racemase, C-terminal domain ATR_1141 PF01168 Alanine racemase, N-terminal domain ATR_1142 PF08459 UvrC Helix-hairpin-helix N-terminal ATR_1142 PF01541 GIY-YIG catalytic domain ATR_1142 PF02151 UvrB/uvrC motif ATR_1143 PF02203 Tar ligand binding domain homologue ATR_1143 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1143 PF00672 HAMP domain ATR_1146 PF02203 Tar ligand binding domain homologue ATR_1146 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1146 PF00672 HAMP domain ATR_1147 PF18381 YcaO cyclodehydratase C-terminal domain ATR_1147 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ATR_1148 PF14602 Hexapeptide repeat of succinyl-transferase ATR_1148 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ATR_1149 PF00270 DEAD/DEAH box helicase ATR_1149 PF00271 Helicase conserved C-terminal domain ATR_1149 PF17764 3′ DNA-binding domain (3′BD) ATR_1149 PF18074 Primosomal protein N C-terminal domain ATR_1149 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ATR_1154 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ATR_1154 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ATR_1156 PF01522 Polysaccharide deacetylase ATR_1162 PF01709 Transcriptional regulator ATR_1166 PF03641 Possible lysine decarboxylase ATR_1167 PF13419 Haloacid dehalogenase-like hydrolase ATR_1171 PF00171 Aldehyde dehydrogenase family ATR_1174 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ATR_1174 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ATR_1178 PF00501 AMP-binding enzyme ATR_1178 PF13193 AMP-binding enzyme C-terminal domain ATR_1179 PF03062 MBOAT, membrane-bound O-acyltransferase family ATR_1182 PF00550 Phosphopantetheine attachment site ATR_1183 PF00132 Bacterial transferase hexapeptide (six repeats) ATR_1188 PF01527 Transposase ATR_1189 PF13276 HTH-like domain ATR_1189 PF13333 Integrase core domain ATR_1189 PF00665 Integrase core domain ATR_1192 PF13476 AAA domain ATR_1193 PF00149 Calcineurin-like phosphoesterase ATR_1193 PF12320 Type 5 capsule protein repressor C-terminal domain ATR_1196 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATR_1196 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATR_1200 PF08386 TAP-like protein ATR_1200 PF00561 alpha/beta hydrolase fold ATR_1203 PF00109 Beta-ketoacyl synthase, N-terminal domain ATR_1203 PF02801 Beta-ketoacyl synthase, C-terminal domain ATR_1205 PF00550 Phosphopantetheine attachment site ATR_1209 PF00221 Aromatic amino acid lyase ATR_1214 PF00501 AMP-binding enzyme ATR_1214 PF13193 AMP-binding enzyme C-terminal domain ATR_1215 PF00005 ABC transporter ATR_1218 PF02801 Beta-ketoacyl synthase, C-terminal domain ATR_1218 PF00109 Beta-ketoacyl synthase, N-terminal domain ATR_1223 PF01145 SPFH domain / Band 7 family ATR_1224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1224 PF13426 PAS domain ATR_1224 PF00672 HAMP domain ATR_1224 PF00512 His Kinase A (phospho-acceptor) domain ATR_1225 PF00486 Transcriptional regulatory protein, C terminal ATR_1225 PF00072 Response regulator receiver domain ATR_1230 PF05525 Branched-chain amino acid transport protein ATR_1231 PF00588 SpoU rRNA Methylase family ATR_1232 PF01842 ACT domain ATR_1232 PF00551 Formyl transferase ATR_1233 PF01515 Phosphate acetyl/butaryl transferase ATR_1233 PF00390 Malic enzyme, N-terminal domain ATR_1233 PF03949 Malic enzyme, NAD binding domain ATR_1234 PF02578 Multi-copper polyphenol oxidoreductase laccase ATR_1236 PF08501 Shikimate dehydrogenase substrate binding domain ATR_1237 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ATR_1237 PF00925 GTP cyclohydrolase II ATR_1242 PF00293 NUDIX domain ATR_1243 PF04461 Protein of unknown function (DUF520) ATR_1244 PF04241 Protein of unknown function (DUF423) ATR_1245 PF00156 Phosphoribosyl transferase domain ATR_1246 PF06434 Aconitate hydratase 2 N-terminus ATR_1246 PF00330 Aconitase family (aconitate hydratase) ATR_1246 PF11791 Aconitate B N-terminal domain ATR_1248 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATR_1250 PF00072 Response regulator receiver domain ATR_1250 PF00486 Transcriptional regulatory protein, C terminal ATR_1251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1252 PF00893 Small Multidrug Resistance protein ATR_1254 PF01161 Phosphatidylethanolamine-binding protein ATR_1255 PF03466 LysR substrate binding domain ATR_1255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATR_1256 PF03601 Conserved hypothetical protein 698 ATR_1258 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATR_1258 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATR_1258 PF02770 Acyl-CoA dehydrogenase, middle domain ATR_1261 PF01527 Transposase ATR_1262 PF13333 Integrase core domain ATR_1262 PF00665 Integrase core domain ATR_1262 PF13276 HTH-like domain ATR_1263 PF17158 Membrane-associated sensor, integral membrane domain ATR_1263 PF00990 Diguanylate cyclase, GGDEF domain ATR_1264 PF02665 Nitrate reductase gamma subunit ATR_1264 PF13183 4Fe-4S dicluster domain ATR_1264 PF02754 Cysteine-rich domain ATR_1265 PF01790 Prolipoprotein diacylglyceryl transferase ATR_1269 PF02348 Cytidylyltransferase ATR_1270 PF00005 ABC transporter ATR_1270 PF12399 Branched-chain amino acid ATP-binding cassette transporter ATR_1272 PF02885 Glycosyl transferase family, helical bundle domain ATR_1272 PF00591 Glycosyl transferase family, a/b domain ATR_1274 PF00106 short chain dehydrogenase ATR_1276 PF00933 Glycosyl hydrolase family 3 N terminal domain ATR_1278 PF01556 DnaJ C terminal domain ATR_1278 PF00684 DnaJ central domain ATR_1278 PF00226 DnaJ domain ATR_1281 PF00873 AcrB/AcrD/AcrF family ATR_1282 PF00529 HlyD membrane-fusion protein of T1SS ATR_1282 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATR_1285 PF00072 Response regulator receiver domain ATR_1285 PF00486 Transcriptional regulatory protein, C terminal ATR_1286 PF08447 PAS fold ATR_1286 PF08448 PAS fold ATR_1286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1287 PF08534 Redoxin ATR_1288 PF00873 AcrB/AcrD/AcrF family ATR_1289 PF00873 AcrB/AcrD/AcrF family ATR_1290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATR_1292 PF11849 Domain of unknown function (DUF3369) ATR_1293 PF00813 FliP family ATR_1294 PF00905 Penicillin binding protein transpeptidase domain ATR_1294 PF03717 Penicillin-binding Protein dimerisation domain ATR_1298 PF00005 ABC transporter ATR_1299 PF02390 Putative methyltransferase ATR_1301 PF01479 S4 domain ATR_1301 PF00849 RNA pseudouridylate synthase ATR_1302 PF01098 Cell cycle protein ATR_1305 PF00202 Aminotransferase class-III ATR_1306 PF06865 Pyrimidine/purine nucleoside phosphorylase ATR_1309 PF03707 Bacterial signalling protein N terminal repeat ATR_1309 PF00563 EAL domain ATR_1309 PF00990 Diguanylate cyclase, GGDEF domain ATR_1311 PF00672 HAMP domain ATR_1311 PF02203 Tar ligand binding domain homologue ATR_1311 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1313 PF00403 Heavy-metal-associated domain ATR_1314 PF01022 Bacterial regulatory protein, arsR family ATR_1316 PF00672 HAMP domain ATR_1316 PF02203 Tar ligand binding domain homologue ATR_1316 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1317 PF00075 RNase H ATR_1318 PF00682 HMGL-like ATR_1320 PF01312 FlhB HrpN YscU SpaS Family ATR_1322 PF00583 Acetyltransferase (GNAT) family ATR_1323 PF01926 50S ribosome-binding GTPase ATR_1327 PF00475 Imidazoleglycerol-phosphate dehydratase ATR_1328 PF03330 Lytic transglycolase ATR_1328 PF05036 Sporulation related domain ATR_1330 PF01026 TatD related DNase ATR_1332 PF07724 AAA domain (Cdc48 subfamily) ATR_1332 PF10431 C-terminal, D2-small domain, of ClpB protein ATR_1333 PF00227 Proteasome subunit ATR_1334 PF01281 Ribosomal protein L9, N-terminal domain ATR_1334 PF03948 Ribosomal protein L9, C-terminal domain ATR_1336 PF02441 Flavoprotein ATR_1337 PF01467 Cytidylyltransferase-like ATR_1338 PF02223 Thymidylate kinase ATR_1339 PF03129 Anticodon binding domain ATR_1339 PF13393 Histidyl-tRNA synthetase ATR_1340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATR_1340 PF17944 Arginine decarboxylase C-terminal helical extension ATR_1340 PF17810 Arginine decarboxylase helical bundle domain ATR_1341 PF00132 Bacterial transferase hexapeptide (six repeats) ATR_1341 PF06426 Serine acetyltransferase, N-terminal ATR_1342 PF01925 Sulfite exporter TauE/SafE ATR_1345 PF06865 Pyrimidine/purine nucleoside phosphorylase ATR_1348 PF01527 Transposase ATR_1349 PF13276 HTH-like domain ATR_1349 PF13333 Integrase core domain ATR_1349 PF00665 Integrase core domain ATR_1352 PF08668 HDOD domain ATR_1353 PF01926 50S ribosome-binding GTPase ATR_1353 PF06071 Protein of unknown function (DUF933) ATR_1354 PF02554 Carbon starvation protein CstA ATR_1354 PF13722 5TM C-terminal transporter carbon starvation CstA ATR_1357 PF00593 TonB dependent receptor ATR_1357 PF07715 TonB-dependent Receptor Plug Domain ATR_1358 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATR_1358 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATR_1359 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATR_1360 PF08334 Type II secretion system (T2SS), protein G ATR_1360 PF07963 Prokaryotic N-terminal methylation motif ATR_1361 PF03796 DnaB-like helicase C terminal domain ATR_1361 PF00772 DnaB-like helicase N terminal domain ATR_1362 PF04551 GcpE protein ATR_1363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1363 PF08448 PAS fold ATR_1363 PF08447 PAS fold ATR_1365 PF00152 tRNA synthetases class II (D, K and N) ATR_1365 PF01336 OB-fold nucleic acid binding domain ATR_1366 PF00464 Serine hydroxymethyltransferase ATR_1368 PF04715 Anthranilate synthase component I, N terminal region ATR_1368 PF00425 chorismate binding enzyme ATR_1369 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ATR_1370 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ATR_1372 PF00990 Diguanylate cyclase, GGDEF domain ATR_1372 PF17158 Membrane-associated sensor, integral membrane domain ATR_1374 PF00300 Histidine phosphatase superfamily (branch 1) ATR_1376 PF12631 MnmE helical domain ATR_1376 PF10396 GTP-binding protein TrmE N-terminus ATR_1376 PF01926 50S ribosome-binding GTPase ATR_1378 PF02096 60Kd inner membrane protein ATR_1378 PF14849 YidC periplasmic domain ATR_1379 PF01809 Putative membrane protein insertion efficiency factor ATR_1380 PF00825 Ribonuclease P ATR_1381 PF00468 Ribosomal protein L34 ATR_1382 PF10431 C-terminal, D2-small domain, of ClpB protein ATR_1382 PF02861 Clp amino terminal domain, pathogenicity island component ATR_1382 PF07724 AAA domain (Cdc48 subfamily) ATR_1382 PF17871 AAA lid domain ATR_1382 PF00004 ATPase family associated with various cellular activities (AAA) ATR_1383 PF01351 Ribonuclease HII ATR_1384 PF00005 ABC transporter ATR_1384 PF02687 FtsX-like permease family ATR_1384 PF12704 MacB-like periplasmic core domain ATR_1385 PF00005 ABC transporter ATR_1385 PF02687 FtsX-like permease family ATR_1385 PF12704 MacB-like periplasmic core domain ATR_1388 PF01618 MotA/TolQ/ExbB proton channel family ATR_1389 PF02472 Biopolymer transport protein ExbD/TolR ATR_1391 PF01420 Type I restriction modification DNA specificity domain ATR_1392 PF02384 N-6 DNA Methylase ATR_1392 PF12161 HsdM N-terminal domain ATR_1393 PF13784 Fic/DOC family N-terminal ATR_1393 PF02661 Fic/DOC family ATR_1395 PF08463 EcoEI R protein C-terminal ATR_1395 PF00271 Helicase conserved C-terminal domain ATR_1395 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ATR_1395 PF04851 Type III restriction enzyme, res subunit ATR_1396 PF00118 TCP-1/cpn60 chaperonin family ATR_1397 PF00166 Chaperonin 10 Kd subunit ATR_1398 PF00348 Polyprenyl synthetase ATR_1399 PF02575 YbaB/EbfC DNA-binding family ATR_1400 PF02261 Aspartate decarboxylase ATR_1401 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ATR_1402 PF01584 CheW-like domain ATR_1403 PF02601 Exonuclease VII, large subunit ATR_1403 PF13742 OB-fold nucleic acid binding domain ATR_1404 PF01209 ubiE/COQ5 methyltransferase family ATR_1407 PF13277 YmdB-like protein ATR_1408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1408 PF00512 His Kinase A (phospho-acceptor) domain ATR_1408 PF00989 PAS fold ATR_1408 PF13188 PAS domain ATR_1408 PF13426 PAS domain ATR_1410 PF00072 Response regulator receiver domain ATR_1410 PF00486 Transcriptional regulatory protein, C terminal ATR_1411 PF00672 HAMP domain ATR_1411 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1411 PF02203 Tar ligand binding domain homologue ATR_1414 PF00072 Response regulator receiver domain ATR_1414 PF00486 Transcriptional regulatory protein, C terminal ATR_1416 PF02719 Polysaccharide biosynthesis protein ATR_1418 PF00953 Glycosyl transferase family 4 ATR_1420 PF00535 Glycosyl transferase family 2 ATR_1421 PF00535 Glycosyl transferase family 2 ATR_1423 PF13419 Haloacid dehalogenase-like hydrolase ATR_1426 PF16363 GDP-mannose 4,6 dehydratase ATR_1427 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATR_1427 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATR_1428 PF03328 HpcH/HpaI aldolase/citrate lyase family ATR_1431 PF03062 MBOAT, membrane-bound O-acyltransferase family ATR_1433 PF13439 Glycosyltransferase Family 4 ATR_1433 PF00534 Glycosyl transferases group 1 ATR_1435 PF00005 ABC transporter ATR_1435 PF08239 Bacterial SH3 domain ATR_1436 PF01061 ABC-2 type transporter ATR_1437 PF16363 GDP-mannose 4,6 dehydratase ATR_1440 PF00072 Response regulator receiver domain ATR_1441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1441 PF00512 His Kinase A (phospho-acceptor) domain ATR_1441 PF08448 PAS fold ATR_1441 PF13188 PAS domain ATR_1441 PF00072 Response regulator receiver domain ATR_1442 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ATR_1443 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ATR_1444 PF03480 Bacterial extracellular solute-binding protein, family 7 ATR_1445 PF02673 Bacitracin resistance protein BacA ATR_1446 PF02621 Menaquinone biosynthesis ATR_1448 PF02391 MoaE protein ATR_1450 PF03951 Glutamine synthetase, beta-Grasp domain ATR_1450 PF00120 Glutamine synthetase, catalytic domain ATR_1451 PF00885 6,7-dimethyl-8-ribityllumazine synthase ATR_1452 PF01029 NusB family ATR_1453 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ATR_1457 PF13276 HTH-like domain ATR_1457 PF00665 Integrase core domain ATR_1457 PF13333 Integrase core domain ATR_1458 PF01527 Transposase ATR_1464 PF00403 Heavy-metal-associated domain ATR_1465 PF03144 Elongation factor Tu domain 2 ATR_1465 PF00009 Elongation factor Tu GTP binding domain ATR_1465 PF00679 Elongation factor G C-terminus ATR_1465 PF06421 GTP-binding protein LepA C-terminus ATR_1468 PF00117 Glutamine amidotransferase class-I ATR_1469 PF00977 Histidine biosynthesis protein ATR_1470 PF00990 Diguanylate cyclase, GGDEF domain ATR_1470 PF00072 Response regulator receiver domain ATR_1471 PF00625 Guanylate kinase ATR_1473 PF00005 ABC transporter ATR_1474 PF00889 Elongation factor TS ATR_1475 PF00318 Ribosomal protein S2 ATR_1476 PF02875 Mur ligase family, glutamate ligase domain ATR_1476 PF08245 Mur ligase middle domain ATR_1480 PF00133 tRNA synthetases class I (I, L, M and V) ATR_1480 PF08264 Anticodon-binding domain of tRNA ATR_1481 PF06039 Malate:quinone oxidoreductase (Mqo) ATR_1482 PF18146 Damage-inducible protein CinA KH domain ATR_1482 PF02464 Competence-damaged protein ATR_1482 PF00994 Probable molybdopterin binding domain ATR_1491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1491 PF00512 His Kinase A (phospho-acceptor) domain ATR_1492 PF00072 Response regulator receiver domain ATR_1492 PF00486 Transcriptional regulatory protein, C terminal ATR_1494 PF00474 Sodium:solute symporter family ATR_1496 PF11490 DNA polymerase III polC-type N-terminus II ATR_1496 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATR_1496 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATR_1496 PF14579 Helix-hairpin-helix motif ATR_1496 PF02811 PHP domain ATR_1496 PF00929 Exonuclease ATR_1498 PF00474 Sodium:solute symporter family ATR_1500 PF00474 Sodium:solute symporter family ATR_1502 PF00871 Acetokinase family ATR_1503 PF01515 Phosphate acetyl/butaryl transferase ATR_1504 PF00871 Acetokinase family ATR_1505 PF01343 Peptidase family S49 ATR_1506 PF01979 Amidohydrolase family ATR_1507 PF01220 Dehydroquinase class II ATR_1508 PF00557 Metallopeptidase family M24 ATR_1508 PF01321 Creatinase/Prolidase N-terminal domain ATR_1509 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATR_1512 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ATR_1512 PF14572 Phosphoribosyl synthetase-associated domain ATR_1513 PF05736 OprF membrane domain ATR_1513 PF00691 OmpA family ATR_1514 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATR_1514 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATR_1514 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATR_1514 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATR_1515 PF00483 Nucleotidyl transferase ATR_1516 PF00342 Phosphoglucose isomerase ATR_1520 PF00113 Enolase, C-terminal TIM barrel domain ATR_1520 PF03952 Enolase, N-terminal domain ATR_1521 PF13333 Integrase core domain ATR_1521 PF00665 Integrase core domain ATR_1521 PF13276 HTH-like domain ATR_1522 PF01527 Transposase ATR_1523 PF05188 MutS domain II ATR_1523 PF05192 MutS domain III ATR_1523 PF05190 MutS family domain IV ATR_1523 PF00488 MutS domain V ATR_1523 PF01624 MutS domain I ATR_1526 PF00682 HMGL-like ATR_1526 PF08502 LeuA allosteric (dimerisation) domain ATR_1527 PF00004 ATPase family associated with various cellular activities (AAA) ATR_1527 PF17862 AAA+ lid domain ATR_1527 PF01434 Peptidase family M41 ATR_1529 PF01207 Dihydrouridine synthase (Dus) ATR_1531 PF02590 Predicted SPOUT methyltransferase ATR_1532 PF02581 Thiamine monophosphate synthase ATR_1533 PF17848 Acetyl-coA carboxylase zinc finger domain ATR_1533 PF01039 Carboxyl transferase domain ATR_1534 PF02773 S-adenosylmethionine synthetase, C-terminal domain ATR_1534 PF02772 S-adenosylmethionine synthetase, central domain ATR_1534 PF00438 S-adenosylmethionine synthetase, N-terminal domain ATR_1535 PF01380 SIS domain ATR_1536 PF00459 Inositol monophosphatase family ATR_1543 PF00883 Cytosol aminopeptidase family, catalytic domain ATR_1543 PF02789 Cytosol aminopeptidase family, N-terminal domain ATR_1545 PF00291 Pyridoxal-phosphate dependent enzyme ATR_1546 PF00156 Phosphoribosyl transferase domain ATR_1548 PF01053 Cys/Met metabolism PLP-dependent enzyme ATR_1549 PF01053 Cys/Met metabolism PLP-dependent enzyme ATR_1550 PF02502 Ribose/Galactose Isomerase ATR_1551 PF10502 Signal peptidase, peptidase S26 ATR_1552 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ATR_1552 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ATR_1554 PF00313 'Cold-shock' DNA-binding domain ATR_1557 PF04998 RNA polymerase Rpb1, domain 5 ATR_1557 PF04997 RNA polymerase Rpb1, domain 1 ATR_1557 PF00623 RNA polymerase Rpb1, domain 2 ATR_1557 PF04983 RNA polymerase Rpb1, domain 3 ATR_1557 PF05000 RNA polymerase Rpb1, domain 4 ATR_1558 PF04563 RNA polymerase beta subunit ATR_1558 PF04561 RNA polymerase Rpb2, domain 2 ATR_1558 PF04565 RNA polymerase Rpb2, domain 3 ATR_1558 PF10385 RNA polymerase beta subunit external 1 domain ATR_1558 PF00562 RNA polymerase Rpb2, domain 6 ATR_1558 PF04560 RNA polymerase Rpb2, domain 7 ATR_1559 PF00542 Ribosomal protein L7/L12 C-terminal domain ATR_1559 PF16320 Ribosomal protein L7/L12 dimerisation domain ATR_1560 PF00466 Ribosomal protein L10 ATR_1561 PF00687 Ribosomal protein L1p/L10e family ATR_1562 PF03946 Ribosomal protein L11, N-terminal domain ATR_1562 PF00298 Ribosomal protein L11, RNA binding domain ATR_1563 PF02357 Transcription termination factor nusG ATR_1566 PF00471 Ribosomal protein L33 ATR_1567 PF03144 Elongation factor Tu domain 2 ATR_1567 PF03143 Elongation factor Tu C-terminal domain ATR_1567 PF00009 Elongation factor Tu GTP binding domain ATR_1572 PF08245 Mur ligase middle domain ATR_1573 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ATR_1573 PF00953 Glycosyl transferase family 4 ATR_1574 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ATR_1574 PF01676 Metalloenzyme superfamily ATR_1575 PF00005 ABC transporter ATR_1575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ATR_1576 PF00912 Transglycosylase ATR_1576 PF00905 Penicillin binding protein transpeptidase domain ATR_1577 PF04357 TamB, inner membrane protein subunit of TAM complex ATR_1580 PF00271 Helicase conserved C-terminal domain ATR_1580 PF03461 TRCF domain ATR_1580 PF17757 UvrB interaction domain ATR_1580 PF02559 CarD-like/TRCF domain ATR_1580 PF00270 DEAD/DEAH box helicase ATR_1585 PF08245 Mur ligase middle domain ATR_1587 PF00133 tRNA synthetases class I (I, L, M and V) ATR_1587 PF13603 Leucyl-tRNA synthetase, Domain 2 ATR_1587 PF09334 tRNA synthetases class I (M) ATR_1589 PF01618 MotA/TolQ/ExbB proton channel family ATR_1590 PF00691 OmpA family ATR_1590 PF13677 Membrane MotB of proton-channel complex MotA/MotB ATR_1593 PF07549 SecD/SecF GG Motif ATR_1593 PF02355 Protein export membrane protein ATR_1594 PF02355 Protein export membrane protein ATR_1595 PF02699 Preprotein translocase subunit ATR_1597 PF00571 CBS domain ATR_1597 PF01368 DHH family ATR_1597 PF02272 DHHA1 domain ATR_1597 PF01743 Poly A polymerase head domain ATR_1598 PF00924 Mechanosensitive ion channel ATR_1598 PF05552 Conserved TM helix ATR_1599 PF03129 Anticodon binding domain ATR_1599 PF04073 Aminoacyl-tRNA editing domain ATR_1599 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATR_1600 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ATR_1600 PF01488 Shikimate / quinate 5-dehydrogenase ATR_1600 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ATR_1601 PF00348 Polyprenyl synthetase ATR_1603 PF00815 Histidinol dehydrogenase ATR_1604 PF01202 Shikimate kinase ATR_1605 PF05538 Campylobacter major outer membrane protein ATR_1606 PF03309 Type III pantothenate kinase ATR_1607 PF01634 ATP phosphoribosyltransferase ATR_1611 PF01527 Transposase ATR_1612 PF13333 Integrase core domain ATR_1612 PF00665 Integrase core domain ATR_1612 PF13276 HTH-like domain ATR_1613 PF00579 tRNA synthetases class I (W and Y) ATR_1614 PF02659 Putative manganese efflux pump ATR_1615 PF00171 Aldehyde dehydrogenase family ATR_1616 PF02472 Biopolymer transport protein ExbD/TolR ATR_1617 PF01618 MotA/TolQ/ExbB proton channel family ATR_1620 PF01042 Endoribonuclease L-PSP ATR_1621 PF00293 NUDIX domain ATR_1623 PF00155 Aminotransferase class I and II ATR_1624 PF09335 SNARE associated Golgi protein ATR_1625 PF01245 Ribosomal protein L19 ATR_1626 PF01746 tRNA (Guanine-1)-methyltransferase ATR_1628 PF08267 Cobalamin-independent synthase, N-terminal domain ATR_1628 PF01717 Cobalamin-independent synthase, Catalytic domain ATR_1629 PF00672 HAMP domain ATR_1629 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1629 PF02203 Tar ligand binding domain homologue ATR_1630 PF03994 Domain of Unknown Function (DUF350) ATR_1631 PF01613 Flavin reductase like domain ATR_1633 PF00771 FHIPEP family ATR_1635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATR_1635 PF18269 T3SS EscN ATPase C-terminal domain ATR_1637 PF01312 FlhB HrpN YscU SpaS Family ATR_1640 PF00460 Flagella basal body rod protein ATR_1640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATR_1641 PF02049 Flagellar hook-basal body complex protein FliE ATR_1643 PF10609 NUBPL iron-transfer P-loop NTPase ATR_1644 PF00448 SRP54-type protein, GTPase domain ATR_1648 PF16973 Flagellar motor switch protein FliN N-terminal ATR_1648 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATR_1652 PF07196 Flagellin hook IN motif ATR_1652 PF00460 Flagella basal body rod protein ATR_1653 PF07196 Flagellin hook IN motif ATR_1653 PF00460 Flagella basal body rod protein ATR_1653 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATR_1653 PF07559 Flagellar basal body protein FlaE ATR_1655 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATR_1657 PF01706 FliG C-terminal domain ATR_1657 PF14841 FliG middle domain ATR_1657 PF14842 FliG N-terminal domain ATR_1658 PF01514 Secretory protein of YscJ/FliF family ATR_1658 PF08345 Flagellar M-ring protein C-terminal ATR_1659 PF00460 Flagella basal body rod protein ATR_1660 PF00460 Flagella basal body rod protein ATR_1660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATR_1662 PF00072 Response regulator receiver domain ATR_1663 PF00460 Flagella basal body rod protein ATR_1663 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATR_1666 PF01782 RimM N-terminal domain ATR_1668 PF00886 Ribosomal protein S16 ATR_1669 PF00448 SRP54-type protein, GTPase domain ATR_1669 PF02978 Signal peptide binding domain ATR_1669 PF02881 SRP54-type protein, helical bundle domain ATR_1670 PF00849 RNA pseudouridylate synthase ATR_1671 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ATR_1671 PF02390 Putative methyltransferase ATR_1673 PF01784 NIF3 (NGG1p interacting factor 3) ATR_1674 PF02091 Glycyl-tRNA synthetase alpha subunit ATR_1676 PF00731 AIR carboxylase ATR_1678 PF01136 Peptidase family U32 ATR_1679 PF17200 Single Cache domain 2 ATR_1679 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1679 PF00672 HAMP domain ATR_1679 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1679 PF00672 HAMP domain ATR_1679 PF17200 Single Cache domain 2 ATR_1680 PF13476 AAA domain ATR_1681 PF01513 ATP-NAD kinase ATR_1682 PF00679 Elongation factor G C-terminus ATR_1682 PF14492 Elongation Factor G, domain II ATR_1682 PF03764 Elongation factor G, domain IV ATR_1682 PF00009 Elongation factor Tu GTP binding domain ATR_1682 PF03144 Elongation factor Tu domain 2 ATR_1683 PF00177 Ribosomal protein S7p/S5e ATR_1684 PF00164 Ribosomal protein S12/S23 ATR_1685 PF00593 TonB dependent receptor ATR_1685 PF07715 TonB-dependent Receptor Plug Domain ATR_1692 PF00004 ATPase family associated with various cellular activities (AAA) ATR_1692 PF07724 AAA domain (Cdc48 subfamily) ATR_1692 PF17871 AAA lid domain ATR_1692 PF02861 Clp amino terminal domain, pathogenicity island component ATR_1692 PF10431 C-terminal, D2-small domain, of ClpB protein ATR_1693 PF02617 ATP-dependent Clp protease adaptor protein ClpS ATR_1698 PF00501 AMP-binding enzyme ATR_1698 PF13193 AMP-binding enzyme C-terminal domain ATR_1699 PF01575 MaoC like domain ATR_1707 PF00312 Ribosomal protein S15 ATR_1708 PF04055 Radical SAM superfamily ATR_1708 PF06463 Molybdenum Cofactor Synthesis C ATR_1709 PF00591 Glycosyl transferase family, a/b domain ATR_1709 PF02885 Glycosyl transferase family, helical bundle domain ATR_1712 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ATR_1712 PF00384 Molybdopterin oxidoreductase ATR_1712 PF01568 Molydopterin dinucleotide binding domain ATR_1712 PF10518 TAT (twin-arginine translocation) pathway signal sequence ATR_1713 PF12800 4Fe-4S binding domain ATR_1713 PF12838 4Fe-4S dicluster domain ATR_1714 PF12801 4Fe-4S binding domain ATR_1714 PF00037 4Fe-4S binding domain ATR_1715 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ATR_1719 PF00563 EAL domain ATR_1719 PF08495 FIST N domain ATR_1719 PF10442 FIST C domain ATR_1719 PF00990 Diguanylate cyclase, GGDEF domain ATR_1721 PF02403 Seryl-tRNA synthetase N-terminal domain ATR_1721 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATR_1722 PF00512 His Kinase A (phospho-acceptor) domain ATR_1722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATR_1722 PF08521 Two-component sensor kinase N-terminal ATR_1723 PF00486 Transcriptional regulatory protein, C terminal ATR_1723 PF00072 Response regulator receiver domain ATR_1724 PF00639 PPIC-type PPIASE domain ATR_1725 PF01116 Fructose-bisphosphate aldolase class-II ATR_1726 PF00291 Pyridoxal-phosphate dependent enzyme ATR_1726 PF13291 ACT domain ATR_1727 PF00119 ATP synthase A chain ATR_1728 PF02581 Thiamine monophosphate synthase ATR_1729 PF13361 UvrD-like helicase C-terminal domain ATR_1729 PF00580 UvrD/REP helicase N-terminal domain ATR_1730 PF00696 Amino acid kinase family ATR_1731 PF00291 Pyridoxal-phosphate dependent enzyme ATR_1733 PF00032 Cytochrome b(C-terminal)/b6/petD ATR_1733 PF00033 Cytochrome b/b6/petB ATR_1737 PF06508 Queuosine biosynthesis protein QueC ATR_1741 PF00550 Phosphopantetheine attachment site ATR_1742 PF00109 Beta-ketoacyl synthase, N-terminal domain ATR_1742 PF02801 Beta-ketoacyl synthase, C-terminal domain ATR_1743 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ATR_1744 PF01230 HIT domain ATR_1745 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ATR_1745 PF01409 tRNA synthetases class II core domain (F) ATR_1746 PF03484 tRNA synthetase B5 domain ATR_1746 PF01588 Putative tRNA binding domain ATR_1746 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ATR_1746 PF03147 Ferredoxin-fold anticodon binding domain ATR_1747 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATR_1748 PF02401 LytB protein ATR_1749 PF00575 S1 RNA binding domain ATR_1750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATR_1750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATR_1750 PF01842 ACT domain ATR_1751 PF01132 Elongation factor P (EF-P) OB domain ATR_1751 PF08207 Elongation factor P (EF-P) KOW-like domain ATR_1751 PF09285 Elongation factor P, C-terminal ATR_1752 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATR_1752 PF01872 RibD C-terminal domain ATR_1753 PF02576 RimP N-terminal domain ATR_1754 PF02033 Ribosome-binding factor A ATR_1755 PF11987 Translation-initiation factor 2 ATR_1755 PF04760 Translation initiation factor IF-2, N-terminal region ATR_1755 PF00009 Elongation factor Tu GTP binding domain ATR_1757 PF08544 GHMP kinases C terminal ATR_1757 PF00288 GHMP kinases N terminal domain ATR_1759 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ATR_1761 PF01368 DHH family ATR_1761 PF02272 DHHA1 domain ATR_1762 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ATR_1762 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ATR_1763 PF02445 Quinolinate synthetase A protein ATR_1764 PF02660 Glycerol-3-phosphate acyltransferase ATR_1767 PF00472 RF-1 domain ATR_1767 PF03462 PCRF domain ATR_1768 PF01084 Ribosomal protein S18 ATR_1769 PF00436 Single-strand binding protein family ATR_1770 PF01250 Ribosomal protein S6 ATR_1773 PF00773 RNB domain ATR_1774 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ATR_1774 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ATR_1777 PF08359 YsiA-like protein, C-terminal region ATR_1777 PF00440 Bacterial regulatory proteins, tetR family ATR_1780 PF01225 Mur ligase family, catalytic domain ATR_1780 PF02875 Mur ligase family, glutamate ligase domain ATR_1780 PF08245 Mur ligase middle domain ATR_1783 PF01702 Queuine tRNA-ribosyltransferase ATR_1784 PF02686 Glu-tRNAGln amidotransferase C subunit ATR_1785 PF03960 ArsC family ATR_1786 PF09190 DALR domain ATR_1786 PF01406 tRNA synthetases class I (C) catalytic domain ATR_1787 PF13184 NusA-like KH domain ATR_1787 PF08529 NusA N-terminal domain ATR_1789 PF04055 Radical SAM superfamily ATR_1789 PF01938 TRAM domain ATR_1789 PF00919 Uncharacterized protein family UPF0004 ATR_1790 PF04028 Domain of unknown function (DUF374) ATR_1794 PF00012 Hsp70 protein ATR_1795 PF01025 GrpE ATR_1796 PF01628 HrcA protein C terminal domain ATR_1798 PF01416 tRNA pseudouridine synthase ATR_1801 PF01255 Putative undecaprenyl diphosphate synthase ATR_1802 PF02441 Flavoprotein ATR_1802 PF04127 DNA / pantothenate metabolism flavoprotein ATR_1803 PF14602 Hexapeptide repeat of succinyl-transferase ATR_1803 PF12804 MobA-like NTP transferase domain ATR_1805 PF17191 RecG wedge domain ATR_1805 PF00271 Helicase conserved C-terminal domain ATR_1805 PF00270 DEAD/DEAH box helicase ATR_1806 PF05958 tRNA (Uracil-5-)-methyltransferase ATR_1807 PF07196 Flagellin hook IN motif ATR_1807 PF00669 Bacterial flagellin N-terminal helical region ATR_1807 PF00700 Bacterial flagellin C-terminal helical region ATR_1808 PF07196 Flagellin hook IN motif ATR_1808 PF00700 Bacterial flagellin C-terminal helical region ATR_1808 PF00669 Bacterial flagellin N-terminal helical region ATR_1810 PF13472 GDSL-like Lipase/Acylhydrolase family ATR_1810 PF02348 Cytidylyltransferase ATR_1811 PF00483 Nucleotidyl transferase ATR_1812 PF02350 UDP-N-acetylglucosamine 2-epimerase ATR_1813 PF08666 SAF domain ATR_1813 PF03102 NeuB family ATR_1815 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATR_1816 PF02719 Polysaccharide biosynthesis protein ATR_1817 PF01227 GTP cyclohydrolase I ATR_1818 PF01544 CorA-like Mg2+ transporter protein ATR_1819 PF00482 Type II secretion system (T2SS), protein F ATR_1820 PF00437 Type II/IV secretion system protein ATR_1823 PF07650 KH domain ATR_1823 PF01926 50S ribosome-binding GTPase ATR_1831 PF00117 Glutamine amidotransferase class-I ATR_1838 PF01040 UbiA prenyltransferase family ATR_1850 PF01527 Transposase ATR_1851 PF13333 Integrase core domain ATR_1851 PF00665 Integrase core domain ATR_1851 PF13276 HTH-like domain ATR_1860 PF13416 Bacterial extracellular solute-binding protein ATR_1861 PF00528 Binding-protein-dependent transport system inner membrane component ATR_1862 PF00005 ABC transporter ATR_1862 PF08402 TOBE domain ATR_1864 PF00154 recA bacterial DNA recombination protein ATR_1865 PF04055 Radical SAM superfamily ATR_1865 PF06968 Biotin and Thiamin Synthesis associated domain ATR_1866 PF01751 Toprim domain ATR_1866 PF13368 Topoisomerase C-terminal repeat ATR_1866 PF01131 DNA topoisomerase ATR_1867 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ATR_1868 PF02621 Menaquinone biosynthesis ATR_1870 PF17758 Proteasomal ATPase OB N-terminal domain ATR_1870 PF00004 ATPase family associated with various cellular activities (AAA) ATR_1870 PF16450 Proteasomal ATPase OB C-terminal domain ATR_1873 PF01740 STAS domain ATR_1873 PF00916 Sulfate permease family ATR_1874 PF00106 short chain dehydrogenase ATR_1875 PF07690 Major Facilitator Superfamily ATR_1878 PF13651 Adenine-specific methyltransferase EcoRI ATR_1879 PF02899 Phage integrase, N-terminal SAM-like domain ATR_1879 PF00589 Phage integrase family ATR_1880 PF02384 N-6 DNA Methylase ATR_1881 PF01420 Type I restriction modification DNA specificity domain ATR_1883 PF01134 Glucose inhibited division protein A ATR_1883 PF13932 GidA associated domain ATR_1884 PF00677 Lumazine binding domain ATR_1887 PF07724 AAA domain (Cdc48 subfamily) ATR_1887 PF06689 ClpX C4-type zinc finger ATR_1887 PF10431 C-terminal, D2-small domain, of ClpB protein ATR_1888 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ATR_1888 PF00132 Bacterial transferase hexapeptide (six repeats) ATR_1889 PF07977 FabA-like domain ATR_1890 PF02684 Lipid-A-disaccharide synthetase ATR_1891 PF02677 Epoxyqueuosine reductase QueH ATR_1893 PF00209 Sodium:neurotransmitter symporter family ATR_1894 PF01261 Xylose isomerase-like TIM barrel ATR_1900 PF01027 Inhibitor of apoptosis-promoting Bax1 ATR_1901 PF17792 ThiD2 family ATR_1901 PF02581 Thiamine monophosphate synthase ATR_1903 PF03840 Preprotein translocase SecG subunit ATR_1904 PF01765 Ribosome recycling factor ATR_1905 PF00156 Phosphoribosyl transferase domain ATR_1908 PF08448 PAS fold ATR_1908 PF00990 Diguanylate cyclase, GGDEF domain ATR_1909 PF01544 CorA-like Mg2+ transporter protein ATR_1910 PF00005 ABC transporter ATR_1915 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ATR_1916 PF02769 AIR synthase related protein, C-terminal domain ATR_1916 PF00586 AIR synthase related protein, N-terminal domain ATR_1917 PF01924 Hydrogenase formation hypA family ATR_1918 PF01455 HupF/HypC family ATR_1919 PF02492 CobW/HypB/UreG, nucleotide-binding domain ATR_1924 PF01750 Hydrogenase maturation protease ATR_1925 PF01292 Prokaryotic cytochrome b561 ATR_1926 PF00374 Nickel-dependent hydrogenase ATR_1927 PF10518 TAT (twin-arginine translocation) pathway signal sequence ATR_1927 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ATR_1927 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ATR_1928 PF03883 Peroxide stress protein YaaA ATR_1929 PF01914 MarC family integral membrane protein ATR_1932 PF03167 Uracil DNA glycosylase superfamily ATR_1933 PF00171 Aldehyde dehydrogenase family ATR_1934 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATR_1934 PF00205 Thiamine pyrophosphate enzyme, central domain ATR_1934 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATR_1935 PF13419 Haloacid dehalogenase-like hydrolase ATR_1936 PF00384 Molybdopterin oxidoreductase ATR_1936 PF01568 Molydopterin dinucleotide binding domain ATR_1936 PF18364 Molybdopterin oxidoreductase N-terminal domain ATR_1938 PF00210 Ferritin-like domain ATR_1939 PF07690 Major Facilitator Superfamily ATR_1941 PF00009 Elongation factor Tu GTP binding domain ATR_1942 PF01507 Phosphoadenosine phosphosulfate reductase family ATR_1943 PF01507 Phosphoadenosine phosphosulfate reductase family ATR_1945 PF00291 Pyridoxal-phosphate dependent enzyme ATR_1946 PF02082 Transcriptional regulator ATR_1947 PF01053 Cys/Met metabolism PLP-dependent enzyme ATR_1949 PF01212 Beta-eliminating lyase ATR_1951 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATR_1951 PF00529 HlyD membrane-fusion protein of T1SS ATR_1952 PF00873 AcrB/AcrD/AcrF family ATR_1953 PF02321 Outer membrane efflux protein ATR_1954 PF00672 HAMP domain ATR_1954 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1954 PF02203 Tar ligand binding domain homologue ATR_1955 PF00672 HAMP domain ATR_1955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1955 PF02203 Tar ligand binding domain homologue ATR_1958 PF00149 Calcineurin-like phosphoesterase ATR_1960 PF17850 CysA C-terminal regulatory domain ATR_1960 PF12857 TOBE-like domain ATR_1960 PF00005 ABC transporter ATR_1961 PF00528 Binding-protein-dependent transport system inner membrane component ATR_1962 PF00528 Binding-protein-dependent transport system inner membrane component ATR_1963 PF02203 Tar ligand binding domain homologue ATR_1963 PF00672 HAMP domain ATR_1963 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATR_1964 PF00581 Rhodanese-like domain ATR_1964 PF00899 ThiF family ATR_1967 PF02082 Transcriptional regulator ATR_1968 PF00679 Elongation factor G C-terminus ATR_1968 PF00009 Elongation factor Tu GTP binding domain ATR_1968 PF03144 Elongation factor Tu domain 2 ATR_1969 PF04143 Sulphur transport ATR_1970 PF01206 Sulfurtransferase TusA ATR_1971 PF02511 Thymidylate synthase complementing protein ATR_1972 PF03458 UPF0126 domain ATR_1974 PF02911 Formyl transferase, C-terminal domain ATR_1974 PF00551 Formyl transferase ATR_1975 PF02075 Crossover junction endodeoxyribonuclease RuvC