locus-tag class description Alide_0001 PF08299 Bacterial dnaA protein helix-turn-helix Alide_0001 PF00308 Bacterial dnaA protein Alide_0001 PF11638 DnaA N-terminal domain Alide_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Alide_0002 PF02767 DNA polymerase III beta subunit, central domain Alide_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Alide_0003 PF01751 Toprim domain Alide_0003 PF18053 DNA gyrase B subunit insert domain Alide_0003 PF00986 DNA gyrase B subunit, carboxyl terminus Alide_0003 PF00204 DNA gyrase B Alide_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0005 PF02515 CoA-transferase family III Alide_0006 PF00378 Enoyl-CoA hydratase/isomerase Alide_0007 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0007 PF03466 LysR substrate binding domain Alide_0008 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0010 PF00364 Biotin-requiring enzyme Alide_0010 PF00289 Biotin carboxylase, N-terminal domain Alide_0010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_0010 PF02785 Biotin carboxylase C-terminal domain Alide_0011 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0011 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0011 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0012 PF01039 Carboxyl transferase domain Alide_0013 PF00708 Acylphosphatase Alide_0015 PF03447 Homoserine dehydrogenase, NAD binding domain Alide_0015 PF01842 ACT domain Alide_0015 PF00742 Homoserine dehydrogenase Alide_0016 PF06733 DEAD_2 Alide_0016 PF13307 Helicase C-terminal domain Alide_0018 PF00877 NlpC/P60 family Alide_0019 PF00793 DAHP synthetase I family Alide_0020 PF03707 Bacterial signalling protein N terminal repeat Alide_0020 PF00990 Diguanylate cyclase, GGDEF domain Alide_0020 PF00563 EAL domain Alide_0022 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0023 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0023 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0023 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0024 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0024 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0024 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0025 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0026 PF13380 CoA binding domain Alide_0026 PF00583 Acetyltransferase (GNAT) family Alide_0026 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_0027 PF00378 Enoyl-CoA hydratase/isomerase Alide_0031 PF04381 Putative exonuclease, RdgC Alide_0032 PF07670 Nucleoside recognition Alide_0035 PF00376 MerR family regulatory protein Alide_0035 PF09278 MerR, DNA binding Alide_0037 PF00403 Heavy-metal-associated domain Alide_0038 PF00672 HAMP domain Alide_0038 PF02203 Tar ligand binding domain homologue Alide_0038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_0039 PF00873 AcrB/AcrD/AcrF family Alide_0040 PF00529 HlyD membrane-fusion protein of T1SS Alide_0040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide_0042 PF00072 Response regulator receiver domain Alide_0042 PF00486 Transcriptional regulatory protein, C terminal Alide_0043 PF00512 His Kinase A (phospho-acceptor) domain Alide_0043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0044 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alide_0045 PF00043 Glutathione S-transferase, C-terminal domain Alide_0045 PF02798 Glutathione S-transferase, N-terminal domain Alide_0046 PF03692 Putative zinc- or iron-chelating domain Alide_0047 PF03358 NADPH-dependent FMN reductase Alide_0048 PF01134 Glucose inhibited division protein A Alide_0048 PF13932 GidA associated domain Alide_0050 PF02527 rRNA small subunit methyltransferase G Alide_0051 PF01810 LysE type translocator Alide_0052 PF13614 AAA domain Alide_0054 PF17762 HTH domain found in ParB protein Alide_0054 PF02195 ParB-like nuclease domain Alide_0059 PF05552 Conserved TM helix Alide_0059 PF00924 Mechanosensitive ion channel Alide_0061 PF02913 FAD linked oxidases, C-terminal domain Alide_0061 PF01565 FAD binding domain Alide_0064 PF04233 Phage Mu protein F like protein Alide_0077 PF01923 Cobalamin adenosyltransferase Alide_0078 PF03061 Thioesterase superfamily Alide_0079 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Alide_0079 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Alide_0081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0081 PF03466 LysR substrate binding domain Alide_0082 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0084 PF00106 short chain dehydrogenase Alide_0086 PF00860 Permease family Alide_0088 PF01494 FAD binding domain Alide_0089 PF13193 AMP-binding enzyme C-terminal domain Alide_0089 PF00501 AMP-binding enzyme Alide_0090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0090 PF03466 LysR substrate binding domain Alide_0091 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0092 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0092 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0092 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0093 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0093 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0093 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0094 PF00378 Enoyl-CoA hydratase/isomerase Alide_0095 PF01066 CDP-alcohol phosphatidyltransferase Alide_0096 PF00593 TonB dependent receptor Alide_0096 PF07715 TonB-dependent Receptor Plug Domain Alide_0099 PF03775 Septum formation inhibitor MinC, C-terminal domain Alide_0099 PF05209 Septum formation inhibitor MinC, N-terminal domain Alide_0100 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_0101 PF03776 Septum formation topological specificity factor MinE Alide_0102 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0102 PF03466 LysR substrate binding domain Alide_0103 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0104 PF13378 Enolase C-terminal domain-like Alide_0104 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Alide_0105 PF01613 Flavin reductase like domain Alide_0106 PF00561 alpha/beta hydrolase fold Alide_0110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0110 PF03466 LysR substrate binding domain Alide_0112 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Alide_0112 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Alide_0114 PF13291 ACT domain Alide_0114 PF00291 Pyridoxal-phosphate dependent enzyme Alide_0115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0115 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0115 PF18158 Adaptive response protein AidB N-terminal domain Alide_0116 PF00690 Cation transporter/ATPase, N-terminus Alide_0116 PF00689 Cation transporting ATPase, C-terminus Alide_0117 PF02607 B12 binding domain Alide_0117 PF02574 Homocysteine S-methyltransferase Alide_0117 PF00809 Pterin binding enzyme Alide_0117 PF02310 B12 binding domain Alide_0117 PF02965 Vitamin B12 dependent methionine synthase, activation domain Alide_0118 PF03466 LysR substrate binding domain Alide_0118 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0119 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0119 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0119 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0121 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0122 PF09382 RQC domain Alide_0122 PF16124 RecQ zinc-binding Alide_0122 PF00570 HRDC domain Alide_0122 PF00271 Helicase conserved C-terminal domain Alide_0122 PF00270 DEAD/DEAH box helicase Alide_0126 PF03707 Bacterial signalling protein N terminal repeat Alide_0126 PF00990 Diguanylate cyclase, GGDEF domain Alide_0126 PF00563 EAL domain Alide_0128 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_0129 PF02954 Bacterial regulatory protein, Fis family Alide_0129 PF00158 Sigma-54 interaction domain Alide_0131 PF03315 Serine dehydratase beta chain Alide_0131 PF03313 Serine dehydratase alpha chain Alide_0132 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0133 PF00501 AMP-binding enzyme Alide_0133 PF13193 AMP-binding enzyme C-terminal domain Alide_0134 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0136 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0137 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0139 PF13193 AMP-binding enzyme C-terminal domain Alide_0139 PF00501 AMP-binding enzyme Alide_0141 PF00106 short chain dehydrogenase Alide_0142 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0145 PF09339 IclR helix-turn-helix domain Alide_0149 PF02803 Thiolase, C-terminal domain Alide_0149 PF00108 Thiolase, N-terminal domain Alide_0150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0150 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0151 PF13193 AMP-binding enzyme C-terminal domain Alide_0151 PF00501 AMP-binding enzyme Alide_0153 PF00106 short chain dehydrogenase Alide_0154 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0161 PF02515 CoA-transferase family III Alide_0162 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0162 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0162 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0164 PF00106 short chain dehydrogenase Alide_0165 PF13452 N-terminal half of MaoC dehydratase Alide_0166 PF00378 Enoyl-CoA hydratase/isomerase Alide_0167 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Alide_0167 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Alide_0168 PF02803 Thiolase, C-terminal domain Alide_0168 PF00108 Thiolase, N-terminal domain Alide_0170 PF02515 CoA-transferase family III Alide_0171 PF08240 Alcohol dehydrogenase GroES-like domain Alide_0171 PF00107 Zinc-binding dehydrogenase Alide_0172 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0173 PF03466 LysR substrate binding domain Alide_0173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0174 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0175 PF01546 Peptidase family M20/M25/M40 Alide_0175 PF07687 Peptidase dimerisation domain Alide_0176 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0177 PF00501 AMP-binding enzyme Alide_0177 PF13193 AMP-binding enzyme C-terminal domain Alide_0178 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0179 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0180 PF07687 Peptidase dimerisation domain Alide_0180 PF01546 Peptidase family M20/M25/M40 Alide_0183 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0183 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0183 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0186 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0188 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0188 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0188 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0189 PF01039 Carboxyl transferase domain Alide_0190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0190 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0191 PF00378 Enoyl-CoA hydratase/isomerase Alide_0192 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_0192 PF02785 Biotin carboxylase C-terminal domain Alide_0192 PF00289 Biotin carboxylase, N-terminal domain Alide_0192 PF00364 Biotin-requiring enzyme Alide_0194 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0195 PF02515 CoA-transferase family III Alide_0197 PF02515 CoA-transferase family III Alide_0198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0198 PF03466 LysR substrate binding domain Alide_0199 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0200 PF02515 CoA-transferase family III Alide_0201 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide_0201 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Alide_0204 PF02607 B12 binding domain Alide_0204 PF02574 Homocysteine S-methyltransferase Alide_0204 PF00809 Pterin binding enzyme Alide_0204 PF02310 B12 binding domain Alide_0204 PF02965 Vitamin B12 dependent methionine synthase, activation domain Alide_0205 PF18470 Cas9 alpha-helical lobe domain Alide_0205 PF18541 RuvC endonuclease subdomain 3 Alide_0205 PF13395 HNH endonuclease Alide_0207 PF09827 CRISPR associated protein Cas2 Alide_0209 PF03743 Bacterial conjugation TrbI-like protein Alide_0210 PF03524 Conjugal transfer protein Alide_0212 PF04610 TrbL/VirB6 plasmid conjugal transfer protein Alide_0214 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Alide_0216 PF04956 TrbC/VIRB2 family Alide_0217 PF00437 Type II/IV secretion system protein Alide_0219 PF02534 Type IV secretory system Conjugative DNA transfer Alide_0221 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0221 PF03466 LysR substrate binding domain Alide_0222 PF00873 AcrB/AcrD/AcrF family Alide_0223 PF00529 HlyD membrane-fusion protein of T1SS Alide_0223 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide_0224 PF02321 Outer membrane efflux protein Alide_0227 PF00072 Response regulator receiver domain Alide_0227 PF00486 Transcriptional regulatory protein, C terminal Alide_0228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0228 PF00672 HAMP domain Alide_0228 PF00512 His Kinase A (phospho-acceptor) domain Alide_0231 PF00403 Heavy-metal-associated domain Alide_0232 PF13411 MerR HTH family regulatory protein Alide_0235 PF10502 Signal peptidase, peptidase S26 Alide_0238 PF13614 AAA domain Alide_0243 PF01381 Helix-turn-helix Alide_0244 PF05284 Protein of unknown function (DUF736) Alide_0248 PF02195 ParB-like nuclease domain Alide_0249 PF06067 Domain of unknown function (DUF932) Alide_0254 PF05973 Phage derived protein Gp49-like (DUF891) Alide_0256 PF01202 Shikimate kinase Alide_0259 PF00970 Oxidoreductase FAD-binding domain Alide_0259 PF00175 Oxidoreductase NAD-binding domain Alide_0260 PF13458 Periplasmic binding protein Alide_0261 PF02653 Branched-chain amino acid transport system / permease component Alide_0262 PF00005 ABC transporter Alide_0266 PF13335 Magnesium chelatase, subunit ChlI C-terminal Alide_0266 PF01078 Magnesium chelatase, subunit ChlI Alide_0268 PF00543 Nitrogen regulatory protein P-II Alide_0269 PF00909 Ammonium Transporter Family Alide_0270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0270 PF03466 LysR substrate binding domain Alide_0271 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_0271 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_0272 PF00171 Aldehyde dehydrogenase family Alide_0273 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0277 PF12697 Alpha/beta hydrolase family Alide_0279 PF05145 Transition state regulatory protein AbrB Alide_0280 PF03972 MmgE/PrpD family Alide_0281 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0281 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0281 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0282 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0283 PF00583 Acetyltransferase (GNAT) family Alide_0283 PF13380 CoA binding domain Alide_0283 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_0284 PF01565 FAD binding domain Alide_0286 PF02754 Cysteine-rich domain Alide_0286 PF13183 4Fe-4S dicluster domain Alide_0289 PF07690 Major Facilitator Superfamily Alide_0290 PF01168 Alanine racemase, N-terminal domain Alide_0290 PF00842 Alanine racemase, C-terminal domain Alide_0291 PF00034 Cytochrome c Alide_0291 PF03150 Di-haem cytochrome c peroxidase Alide_0292 PF02798 Glutathione S-transferase, N-terminal domain Alide_0292 PF14497 Glutathione S-transferase, C-terminal domain Alide_0293 PF18073 Rubredoxin metal binding domain Alide_0295 PF01425 Amidase Alide_0297 PF01063 Amino-transferase class IV Alide_0301 PF00535 Glycosyl transferase family 2 Alide_0303 PF03060 Nitronate monooxygenase Alide_0304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0304 PF03466 LysR substrate binding domain Alide_0305 PF06779 Uncharacterised MFS-type transporter YbfB Alide_0306 PF03473 MOSC domain Alide_0306 PF03475 3-alpha domain Alide_0310 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0311 PF03466 LysR substrate binding domain Alide_0312 PF02515 CoA-transferase family III Alide_0313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0313 PF00512 His Kinase A (phospho-acceptor) domain Alide_0313 PF00672 HAMP domain Alide_0314 PF00072 Response regulator receiver domain Alide_0314 PF00486 Transcriptional regulatory protein, C terminal Alide_0315 PF07690 Major Facilitator Superfamily Alide_0318 PF01435 Peptidase family M48 Alide_0322 PF00158 Sigma-54 interaction domain Alide_0322 PF02830 V4R domain Alide_0322 PF06505 Activator of aromatic catabolism Alide_0322 PF02954 Bacterial regulatory protein, Fis family Alide_0323 PF06099 Phenol hydroxylase subunit Alide_0324 PF02332 Methane/Phenol/Toluene Hydroxylase Alide_0325 PF02406 MmoB/DmpM family Alide_0326 PF02332 Methane/Phenol/Toluene Hydroxylase Alide_0326 PF04945 YHS domain Alide_0327 PF01494 FAD binding domain Alide_0328 PF00970 Oxidoreductase FAD-binding domain Alide_0328 PF00175 Oxidoreductase NAD-binding domain Alide_0328 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_0329 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_0330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_0331 PF03928 Haem-degrading Alide_0335 PF00171 Aldehyde dehydrogenase family Alide_0336 PF00561 alpha/beta hydrolase fold Alide_0338 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alide_0338 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation Alide_0339 PF07836 DmpG-like communication domain Alide_0339 PF00682 HMGL-like Alide_0341 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0342 PF01361 Tautomerase enzyme Alide_0343 PF00753 Metallo-beta-lactamase superfamily Alide_0344 PF01614 Bacterial transcriptional regulator Alide_0344 PF09339 IclR helix-turn-helix domain Alide_0345 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0346 PF04909 Amidohydrolase Alide_0347 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0348 PF03737 Aldolase/RraA Alide_0349 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_0349 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_0350 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0351 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0352 PF04909 Amidohydrolase Alide_0353 PF08450 SMP-30/Gluconolactonase/LRE-like region Alide_0354 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_0355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_0356 PF00171 Aldehyde dehydrogenase family Alide_0357 PF01614 Bacterial transcriptional regulator Alide_0357 PF09339 IclR helix-turn-helix domain Alide_0361 PF02653 Branched-chain amino acid transport system / permease component Alide_0363 PF00005 ABC transporter Alide_0363 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_0364 PF00005 ABC transporter Alide_0366 PF00392 Bacterial regulatory proteins, gntR family Alide_0366 PF07729 FCD domain Alide_0367 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0367 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0367 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0369 PF01636 Phosphotransferase enzyme family Alide_0370 PF03372 Endonuclease/Exonuclease/phosphatase family Alide_0371 PF00156 Phosphoribosyl transferase domain Alide_0373 PF02637 GatB domain Alide_0373 PF02934 GatB/GatE catalytic domain Alide_0374 PF01425 Amidase Alide_0375 PF02686 Glu-tRNAGln amidotransferase C subunit Alide_0378 PF04093 rod shape-determining protein MreD Alide_0379 PF00905 Penicillin binding protein transpeptidase domain Alide_0379 PF03717 Penicillin-binding Protein dimerisation domain Alide_0380 PF00491 Arginase family Alide_0381 PF01925 Sulfite exporter TauE/SafE Alide_0382 PF05199 GMC oxidoreductase Alide_0382 PF00732 GMC oxidoreductase Alide_0383 PF02405 Permease MlaE Alide_0384 PF00005 ABC transporter Alide_0385 PF02470 MlaD protein Alide_0388 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0388 PF03466 LysR substrate binding domain Alide_0389 PF00330 Aconitase family (aconitate hydratase) Alide_0390 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0391 PF03737 Aldolase/RraA Alide_0392 PF01914 MarC family integral membrane protein Alide_0393 PF01738 Dienelactone hydrolase family Alide_0394 PF07690 Major Facilitator Superfamily Alide_0395 PF13533 Biotin-lipoyl like Alide_0396 PF02321 Outer membrane efflux protein Alide_0398 PF01544 CorA-like Mg2+ transporter protein Alide_0399 PF00490 Delta-aminolevulinic acid dehydratase Alide_0404 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Alide_0405 PF00768 D-alanyl-D-alanine carboxypeptidase Alide_0405 PF07943 Penicillin-binding protein 5, C-terminal domain Alide_0406 PF00164 Ribosomal protein S12/S23 Alide_0407 PF00177 Ribosomal protein S7p/S5e Alide_0408 PF14492 Elongation Factor G, domain II Alide_0408 PF03144 Elongation factor Tu domain 2 Alide_0408 PF00009 Elongation factor Tu GTP binding domain Alide_0408 PF03764 Elongation factor G, domain IV Alide_0408 PF00679 Elongation factor G C-terminus Alide_0409 PF03143 Elongation factor Tu C-terminal domain Alide_0409 PF03144 Elongation factor Tu domain 2 Alide_0409 PF00009 Elongation factor Tu GTP binding domain Alide_0410 PF00338 Ribosomal protein S10p/S20e Alide_0411 PF00297 Ribosomal protein L3 Alide_0412 PF00573 Ribosomal protein L4/L1 family Alide_0413 PF00276 Ribosomal protein L23 Alide_0414 PF00181 Ribosomal Proteins L2, RNA binding domain Alide_0414 PF03947 Ribosomal Proteins L2, C-terminal domain Alide_0415 PF00203 Ribosomal protein S19 Alide_0416 PF00237 Ribosomal protein L22p/L17e Alide_0417 PF07650 KH domain Alide_0417 PF00189 Ribosomal protein S3, C-terminal domain Alide_0418 PF00252 Ribosomal protein L16p/L10e Alide_0419 PF00831 Ribosomal L29 protein Alide_0420 PF00366 Ribosomal protein S17 Alide_0421 PF00462 Glutaredoxin Alide_0421 PF08534 Redoxin Alide_0424 PF00578 AhpC/TSA family Alide_0427 PF00381 PTS HPr component phosphorylation site Alide_0428 PF02896 PEP-utilising enzyme, TIM barrel domain Alide_0428 PF05524 PEP-utilising enzyme, N-terminal Alide_0428 PF00391 PEP-utilising enzyme, mobile domain Alide_0429 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Alide_0429 PF04055 Radical SAM superfamily Alide_0430 PF03099 Biotin/lipoate A/B protein ligase family Alide_0431 PF04359 Protein of unknown function (DUF493) Alide_0433 PF00119 ATP synthase A chain Alide_0434 PF00137 ATP synthase subunit C Alide_0435 PF00430 ATP synthase B/B' CF(0) Alide_0436 PF00213 ATP synthase delta (OSCP) subunit Alide_0437 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide_0437 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alide_0437 PF00306 ATP synthase alpha/beta chain, C terminal domain Alide_0438 PF00231 ATP synthase Alide_0439 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide_0439 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alide_0440 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Alide_0444 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0444 PF03466 LysR substrate binding domain Alide_0450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_0451 PF02321 Outer membrane efflux protein Alide_0452 PF00873 AcrB/AcrD/AcrF family Alide_0453 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide_0453 PF00529 HlyD membrane-fusion protein of T1SS Alide_0454 PF08361 MAATS-type transcriptional repressor, C-terminal region Alide_0454 PF00440 Bacterial regulatory proteins, tetR family Alide_0455 PF00009 Elongation factor Tu GTP binding domain Alide_0455 PF03144 Elongation factor Tu domain 2 Alide_0455 PF03143 Elongation factor Tu C-terminal domain Alide_0456 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Alide_0457 PF00467 KOW motif Alide_0457 PF02357 Transcription termination factor nusG Alide_0458 PF00298 Ribosomal protein L11, RNA binding domain Alide_0458 PF03946 Ribosomal protein L11, N-terminal domain Alide_0459 PF00687 Ribosomal protein L1p/L10e family Alide_0460 PF00466 Ribosomal protein L10 Alide_0461 PF16320 Ribosomal protein L7/L12 dimerisation domain Alide_0461 PF00542 Ribosomal protein L7/L12 C-terminal domain Alide_0462 PF00562 RNA polymerase Rpb2, domain 6 Alide_0462 PF10385 RNA polymerase beta subunit external 1 domain Alide_0462 PF04565 RNA polymerase Rpb2, domain 3 Alide_0462 PF04561 RNA polymerase Rpb2, domain 2 Alide_0462 PF04563 RNA polymerase beta subunit Alide_0462 PF04560 RNA polymerase Rpb2, domain 7 Alide_0463 PF04998 RNA polymerase Rpb1, domain 5 Alide_0463 PF05000 RNA polymerase Rpb1, domain 4 Alide_0463 PF04983 RNA polymerase Rpb1, domain 3 Alide_0463 PF00623 RNA polymerase Rpb1, domain 2 Alide_0463 PF04997 RNA polymerase Rpb1, domain 1 Alide_0465 PF01189 16S rRNA methyltransferase RsmB/F Alide_0465 PF01029 NusB family Alide_0467 PF00989 PAS fold Alide_0467 PF00672 HAMP domain Alide_0467 PF00512 His Kinase A (phospho-acceptor) domain Alide_0467 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0468 PF00158 Sigma-54 interaction domain Alide_0468 PF00072 Response regulator receiver domain Alide_0468 PF02954 Bacterial regulatory protein, Fis family Alide_0471 PF01381 Helix-turn-helix Alide_0472 PF06114 IrrE N-terminal-like domain Alide_0473 PF00665 Integrase core domain Alide_0474 PF01695 IstB-like ATP binding protein Alide_0481 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Alide_0481 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Alide_0481 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Alide_0482 PF01370 NAD dependent epimerase/dehydratase family Alide_0483 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Alide_0484 PF00535 Glycosyl transferase family 2 Alide_0486 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide_0487 PF02021 Uncharacterised protein family UPF0102 Alide_0488 PF13580 SIS domain Alide_0490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_0490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_0491 PF00437 Type II/IV secretion system protein Alide_0492 PF00027 Cyclic nucleotide-binding domain Alide_0492 PF13545 Crp-like helix-turn-helix domain Alide_0493 PF00437 Type II/IV secretion system protein Alide_0494 PF01168 Alanine racemase, N-terminal domain Alide_0497 PF04286 Protein of unknown function (DUF445) Alide_0498 PF01565 FAD binding domain Alide_0498 PF02913 FAD linked oxidases, C-terminal domain Alide_0499 PF03466 LysR substrate binding domain Alide_0499 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0500 PF00551 Formyl transferase Alide_0501 PF00563 EAL domain Alide_0501 PF08447 PAS fold Alide_0501 PF08448 PAS fold Alide_0501 PF00990 Diguanylate cyclase, GGDEF domain Alide_0503 PF02867 Ribonucleotide reductase, barrel domain Alide_0503 PF03477 ATP cone domain Alide_0503 PF00317 Ribonucleotide reductase, all-alpha domain Alide_0504 PF07730 Histidine kinase Alide_0505 PF00196 Bacterial regulatory proteins, luxR family Alide_0505 PF00072 Response regulator receiver domain Alide_0506 PF07690 Major Facilitator Superfamily Alide_0507 PF07690 Major Facilitator Superfamily Alide_0508 PF00384 Molybdopterin oxidoreductase Alide_0508 PF01568 Molydopterin dinucleotide binding domain Alide_0508 PF14710 Respiratory nitrate reductase alpha N-terminal Alide_0509 PF13247 4Fe-4S dicluster domain Alide_0509 PF14711 Respiratory nitrate reductase beta C-terminal Alide_0510 PF02613 Nitrate reductase delta subunit Alide_0511 PF02665 Nitrate reductase gamma subunit Alide_0513 PF00484 Carbonic anhydrase Alide_0516 PF01814 Hemerythrin HHE cation binding domain Alide_0521 PF01568 Molydopterin dinucleotide binding domain Alide_0521 PF00384 Molybdopterin oxidoreductase Alide_0521 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide_0523 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_0524 PF02515 CoA-transferase family III Alide_0525 PF01575 MaoC like domain Alide_0526 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0526 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0526 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0527 PF01575 MaoC like domain Alide_0529 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_0531 PF07687 Peptidase dimerisation domain Alide_0531 PF01546 Peptidase family M20/M25/M40 Alide_0534 PF03352 Methyladenine glycosylase Alide_0538 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0539 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0540 PF14535 AMP-binding enzyme C-terminal domain Alide_0540 PF00501 AMP-binding enzyme Alide_0541 PF00005 ABC transporter Alide_0544 PF02653 Branched-chain amino acid transport system / permease component Alide_0545 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_0545 PF00005 ABC transporter Alide_0546 PF00501 AMP-binding enzyme Alide_0547 PF13401 AAA domain Alide_0547 PF01471 Putative peptidoglycan binding domain Alide_0549 PF00027 Cyclic nucleotide-binding domain Alide_0549 PF13545 Crp-like helix-turn-helix domain Alide_0550 PF00849 RNA pseudouridylate synthase Alide_0550 PF01479 S4 domain Alide_0551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0551 PF00183 Hsp90 protein Alide_0553 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0554 PF01636 Phosphotransferase enzyme family Alide_0555 PF03793 PASTA domain Alide_0555 PF00069 Protein kinase domain Alide_0557 PF02515 CoA-transferase family III Alide_0559 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_0560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_0561 PF05199 GMC oxidoreductase Alide_0561 PF00732 GMC oxidoreductase Alide_0564 PF01061 ABC-2 type transporter Alide_0565 PF00005 ABC transporter Alide_0566 PF07519 Tannase and feruloyl esterase Alide_0567 PF01048 Phosphorylase superfamily Alide_0567 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Alide_0568 PF03707 Bacterial signalling protein N terminal repeat Alide_0568 PF00990 Diguanylate cyclase, GGDEF domain Alide_0568 PF13188 PAS domain Alide_0568 PF00563 EAL domain Alide_0569 PF01545 Cation efflux family Alide_0569 PF16916 Dimerisation domain of Zinc Transporter Alide_0570 PF02580 D-Tyr-tRNA(Tyr) deacylase Alide_0571 PF01925 Sulfite exporter TauE/SafE Alide_0572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0572 PF03466 LysR substrate binding domain Alide_0573 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0574 PF02515 CoA-transferase family III Alide_0575 PF08240 Alcohol dehydrogenase GroES-like domain Alide_0575 PF00107 Zinc-binding dehydrogenase Alide_0576 PF13193 AMP-binding enzyme C-terminal domain Alide_0576 PF00501 AMP-binding enzyme Alide_0577 PF02130 Uncharacterized protein family UPF0054 Alide_0578 PF02562 PhoH-like protein Alide_0579 PF07499 RuvA, C-terminal domain Alide_0579 PF01330 RuvA N terminal domain Alide_0581 PF00012 Hsp70 protein Alide_0582 PF00012 Hsp70 protein Alide_0584 PF05491 RuvB C-terminal winged helix domain Alide_0584 PF17864 RuvB AAA lid domain Alide_0584 PF05496 Holliday junction DNA helicase RuvB P-loop domain Alide_0585 PF02308 MgtC family Alide_0588 PF14031 Putative serine dehydratase domain Alide_0588 PF01168 Alanine racemase, N-terminal domain Alide_0589 PF00300 Histidine phosphatase superfamily (branch 1) Alide_0591 PF01171 PP-loop family Alide_0598 PF00480 ROK family Alide_0599 PF00982 Glycosyltransferase family 20 Alide_0601 PF02358 Trehalose-phosphatase Alide_0602 PF00085 Thioredoxin Alide_0603 PF01966 HD domain Alide_0603 PF12627 Probable RNA and SrmB- binding site of polymerase A Alide_0603 PF01743 Poly A polymerase head domain Alide_0604 PF02954 Bacterial regulatory protein, Fis family Alide_0604 PF00158 Sigma-54 interaction domain Alide_0604 PF01590 GAF domain Alide_0607 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0610 PF01812 5-formyltetrahydrofolate cyclo-ligase family Alide_0611 PF10145 Phage-related minor tail protein Alide_0611 PF01551 Peptidase family M23 Alide_0611 PF01464 Transglycosylase SLT domain Alide_0614 PF18331 PKHD-type hydroxylase C-terminal domain Alide_0614 PF13640 2OG-Fe(II) oxygenase superfamily Alide_0615 PF01070 FMN-dependent dehydrogenase Alide_0616 PF00593 TonB dependent receptor Alide_0616 PF07715 TonB-dependent Receptor Plug Domain Alide_0618 PF00501 AMP-binding enzyme Alide_0618 PF13193 AMP-binding enzyme C-terminal domain Alide_0620 PF02801 Beta-ketoacyl synthase, C-terminal domain Alide_0620 PF00109 Beta-ketoacyl synthase, N-terminal domain Alide_0621 PF07977 FabA-like domain Alide_0622 PF00795 Carbon-nitrogen hydrolase Alide_0623 PF03471 Transporter associated domain Alide_0623 PF00571 CBS domain Alide_0625 PF01037 Lrp/AsnC ligand binding domain Alide_0626 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_0627 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Alide_0628 PF00676 Dehydrogenase E1 component Alide_0628 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal Alide_0629 PF02779 Transketolase, pyrimidine binding domain Alide_0629 PF02780 Transketolase, C-terminal domain Alide_0630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_0630 PF02817 e3 binding domain Alide_0630 PF00364 Biotin-requiring enzyme Alide_0631 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_0631 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_0632 PF02091 Glycyl-tRNA synthetase alpha subunit Alide_0633 PF02092 Glycyl-tRNA synthetase beta subunit Alide_0633 PF05746 DALR anticodon binding domain Alide_0635 PF01553 Acyltransferase Alide_0638 PF01476 LysM domain Alide_0638 PF04972 BON domain Alide_0639 PF03309 Type III pantothenate kinase Alide_0640 PF00440 Bacterial regulatory proteins, tetR family Alide_0640 PF08361 MAATS-type transcriptional repressor, C-terminal region Alide_0642 PF16363 GDP-mannose 4,6 dehydratase Alide_0643 PF04321 RmlD substrate binding domain Alide_0644 PF00483 Nucleotidyl transferase Alide_0645 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Alide_0647 PF00535 Glycosyl transferase family 2 Alide_0648 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alide_0648 PF00437 Type II/IV secretion system protein Alide_0649 PF00482 Type II secretion system (T2SS), protein F Alide_0651 PF00114 Pilin (bacterial filament) Alide_0651 PF07963 Prokaryotic N-terminal methylation motif Alide_0653 PF11612 Type II secretion system (T2SS), protein J Alide_0653 PF07963 Prokaryotic N-terminal methylation motif Alide_0654 PF03934 Type II secretion system (T2SS), protein K Alide_0658 PF00263 Bacterial type II and III secretion system protein Alide_0658 PF03958 Bacterial type II/III secretion system short domain Alide_0664 PF00535 Glycosyl transferase family 2 Alide_0666 PF01061 ABC-2 type transporter Alide_0667 PF00005 ABC transporter Alide_0667 PF14524 Wzt C-terminal domain Alide_0669 PF00398 Ribosomal RNA adenine dimethylase Alide_0670 PF01551 Peptidase family M23 Alide_0670 PF01464 Transglycosylase SLT domain Alide_0670 PF10145 Phage-related minor tail protein Alide_0672 PF00696 Amino acid kinase family Alide_0675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0675 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0675 PF12806 Acetyl-CoA dehydrogenase C-terminal like Alide_0675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0677 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_0677 PF00378 Enoyl-CoA hydratase/isomerase Alide_0677 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_0678 PF00108 Thiolase, N-terminal domain Alide_0678 PF02803 Thiolase, C-terminal domain Alide_0680 PF00378 Enoyl-CoA hydratase/isomerase Alide_0682 PF03061 Thioesterase superfamily Alide_0683 PF00005 ABC transporter Alide_0683 PF00664 ABC transporter transmembrane region Alide_0684 PF00501 AMP-binding enzyme Alide_0684 PF13193 AMP-binding enzyme C-terminal domain Alide_0688 PF03466 LysR substrate binding domain Alide_0688 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0690 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_0691 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide_0692 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Alide_0693 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0693 PF03466 LysR substrate binding domain Alide_0694 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_0695 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0696 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0697 PF00005 ABC transporter Alide_0698 PF02423 Ornithine cyclodeaminase/mu-crystallin family Alide_0700 PF16658 Class II release factor RF3, C-terminal domain Alide_0700 PF00009 Elongation factor Tu GTP binding domain Alide_0700 PF03144 Elongation factor Tu domain 2 Alide_0702 PF05221 S-adenosyl-L-homocysteine hydrolase Alide_0702 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Alide_0703 PF01728 FtsJ-like methyltransferase Alide_0703 PF01479 S4 domain Alide_0704 PF02219 Methylenetetrahydrofolate reductase Alide_0705 PF03330 Lytic transglycolase Alide_0706 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Alide_0707 PF00069 Protein kinase domain Alide_0707 PF08308 PEGA domain Alide_0708 PF00572 Ribosomal protein L13 Alide_0709 PF00380 Ribosomal protein S9/S16 Alide_0710 PF01521 Iron-sulphur cluster biosynthesis Alide_0712 PF03702 Anhydro-N-acetylmuramic acid kinase Alide_0713 PF04225 Opacity-associated protein A LysM-like domain Alide_0713 PF01551 Peptidase family M23 Alide_0715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0715 PF03466 LysR substrate binding domain Alide_0716 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_0716 PF12804 MobA-like NTP transferase domain Alide_0717 PF13492 GAF domain Alide_0717 PF02702 Osmosensitive K+ channel His kinase sensor domain Alide_0717 PF13493 Domain of unknown function (DUF4118) Alide_0717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0717 PF00512 His Kinase A (phospho-acceptor) domain Alide_0719 PF00226 DnaJ domain Alide_0719 PF01556 DnaJ C terminal domain Alide_0720 PF01037 Lrp/AsnC ligand binding domain Alide_0721 PF01380 SIS domain Alide_0725 PF00665 Integrase core domain Alide_0725 PF13276 HTH-like domain Alide_0725 PF13333 Integrase core domain Alide_0726 PF01527 Transposase Alide_0729 PF00174 Oxidoreductase molybdopterin binding domain Alide_0730 PF01292 Prokaryotic cytochrome b561 Alide_0731 PF00486 Transcriptional regulatory protein, C terminal Alide_0731 PF00072 Response regulator receiver domain Alide_0732 PF00989 PAS fold Alide_0732 PF00512 His Kinase A (phospho-acceptor) domain Alide_0732 PF18698 Histidine kinase sensor domain Alide_0732 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0732 PF00672 HAMP domain Alide_0735 PF01050 Mannose-6-phosphate isomerase Alide_0735 PF00483 Nucleotidyl transferase Alide_0738 PF13614 AAA domain Alide_0740 PF01471 Putative peptidoglycan binding domain Alide_0740 PF13401 AAA domain Alide_0745 PF13537 Glutamine amidotransferase domain Alide_0745 PF00733 Asparagine synthase Alide_0746 PF00534 Glycosyl transferases group 1 Alide_0747 PF08323 Starch synthase catalytic domain Alide_0747 PF00534 Glycosyl transferases group 1 Alide_0748 PF02350 UDP-N-acetylglucosamine 2-epimerase Alide_0749 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Alide_0749 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Alide_0749 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Alide_0750 PF00534 Glycosyl transferases group 1 Alide_0750 PF13439 Glycosyltransferase Family 4 Alide_0756 PF00535 Glycosyl transferase family 2 Alide_0758 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Alide_0758 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Alide_0758 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Alide_0759 PF01370 NAD dependent epimerase/dehydratase family Alide_0767 PF13193 AMP-binding enzyme C-terminal domain Alide_0767 PF00501 AMP-binding enzyme Alide_0768 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Alide_0768 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Alide_0769 PF00672 HAMP domain Alide_0769 PF00512 His Kinase A (phospho-acceptor) domain Alide_0769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0770 PF02954 Bacterial regulatory protein, Fis family Alide_0770 PF00072 Response regulator receiver domain Alide_0770 PF00158 Sigma-54 interaction domain Alide_0773 PF01176 Translation initiation factor 1A / IF-1 Alide_0774 PF13532 2OG-Fe(II) oxygenase superfamily Alide_0775 PF00501 AMP-binding enzyme Alide_0775 PF13193 AMP-binding enzyme C-terminal domain Alide_0776 PF00175 Oxidoreductase NAD-binding domain Alide_0776 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_0776 PF00970 Oxidoreductase FAD-binding domain Alide_0780 PF05981 CreA protein Alide_0783 PF00664 ABC transporter transmembrane region Alide_0783 PF00005 ABC transporter Alide_0786 PF03144 Elongation factor Tu domain 2 Alide_0786 PF00009 Elongation factor Tu GTP binding domain Alide_0786 PF03764 Elongation factor G, domain IV Alide_0786 PF00679 Elongation factor G C-terminus Alide_0786 PF14492 Elongation Factor G, domain II Alide_0788 PF00482 Type II secretion system (T2SS), protein F Alide_0789 PF00296 Luciferase-like monooxygenase Alide_0791 PF00437 Type II/IV secretion system protein Alide_0792 PF03958 Bacterial type II/III secretion system short domain Alide_0792 PF00263 Bacterial type II and III secretion system protein Alide_0797 PF07963 Prokaryotic N-terminal methylation motif Alide_0797 PF11612 Type II secretion system (T2SS), protein J Alide_0798 PF02501 Type II secretion system (T2SS), protein I Alide_0798 PF07963 Prokaryotic N-terminal methylation motif Alide_0800 PF07963 Prokaryotic N-terminal methylation motif Alide_0800 PF08334 Type II secretion system (T2SS), protein G Alide_0803 PF02654 Cobalamin-5-phosphate synthase Alide_0804 PF00585 C-terminal regulatory domain of Threonine dehydratase Alide_0804 PF00291 Pyridoxal-phosphate dependent enzyme Alide_0805 PF02566 OsmC-like protein Alide_0806 PF03232 Ubiquinone biosynthesis protein COQ7 Alide_0807 PF13609 Gram-negative porin Alide_0809 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0810 PF07687 Peptidase dimerisation domain Alide_0810 PF01546 Peptidase family M20/M25/M40 Alide_0811 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide_0811 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0812 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_0812 PF00005 ABC transporter Alide_0813 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_0813 PF00005 ABC transporter Alide_0814 PF01161 Phosphatidylethanolamine-binding protein Alide_0815 PF01418 Helix-turn-helix domain, rpiR family Alide_0815 PF02685 Glucokinase Alide_0815 PF01380 SIS domain Alide_0816 PF00923 Transaldolase/Fructose-6-phosphate aldolase Alide_0817 PF00342 Phosphoglucose isomerase Alide_0818 PF00118 TCP-1/cpn60 chaperonin family Alide_0819 PF00166 Chaperonin 10 Kd subunit Alide_0820 PF01467 Cytidylyltransferase-like Alide_0821 PF02773 S-adenosylmethionine synthetase, C-terminal domain Alide_0821 PF02772 S-adenosylmethionine synthetase, central domain Alide_0821 PF00438 S-adenosylmethionine synthetase, N-terminal domain Alide_0823 PF03279 Bacterial lipid A biosynthesis acyltransferase Alide_0824 PF03466 LysR substrate binding domain Alide_0824 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0825 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0826 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0827 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_0828 PF04909 Amidohydrolase Alide_0829 PF01926 50S ribosome-binding GTPase Alide_0830 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_0831 PF05140 ResB-like family Alide_0833 PF00174 Oxidoreductase molybdopterin binding domain Alide_0834 PF01794 Ferric reductase like transmembrane component Alide_0836 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Alide_0836 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Alide_0838 PF01491 Frataxin-like domain Alide_0839 PF17092 Penicillin-binding protein OB-like domain Alide_0839 PF00912 Transglycosylase Alide_0839 PF00905 Penicillin binding protein transpeptidase domain Alide_0844 PF07660 Secretin and TonB N terminus short domain Alide_0844 PF11741 AMIN domain Alide_0844 PF00263 Bacterial type II and III secretion system protein Alide_0844 PF03958 Bacterial type II/III secretion system short domain Alide_0845 PF00746 LPXTG cell wall anchor motif Alide_0846 PF01761 3-dehydroquinate synthase Alide_0847 PF13286 Phosphohydrolase-associated domain Alide_0847 PF01966 HD domain Alide_0850 PF00171 Aldehyde dehydrogenase family Alide_0852 PF03466 LysR substrate binding domain Alide_0852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0854 PF01645 Conserved region in glutamate synthase Alide_0854 PF00310 Glutamine amidotransferases class-II Alide_0854 PF04898 Glutamate synthase central domain Alide_0854 PF01493 GXGXG motif Alide_0855 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_0855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Alide_0857 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0860 PF17284 Spermidine synthase tetramerisation domain Alide_0861 PF02675 S-adenosylmethionine decarboxylase Alide_0862 PF00005 ABC transporter Alide_0863 PF02405 Permease MlaE Alide_0864 PF02470 MlaD protein Alide_0868 PF00072 Response regulator receiver domain Alide_0868 PF00990 Diguanylate cyclase, GGDEF domain Alide_0869 PF00005 ABC transporter Alide_0870 PF01061 ABC-2 type transporter Alide_0871 PF01722 BolA-like protein Alide_0872 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Alide_0873 PF01634 ATP phosphoribosyltransferase Alide_0874 PF00815 Histidinol dehydrogenase Alide_0877 PF00155 Aminotransferase class I and II Alide_0878 PF00475 Imidazoleglycerol-phosphate dehydratase Alide_0879 PF00117 Glutamine amidotransferase class-I Alide_0880 PF00977 Histidine biosynthesis protein Alide_0883 PF17101 Stealth protein CR1, conserved region 1 Alide_0883 PF11380 Stealth protein CR2, conserved region 2 Alide_0883 PF00534 Glycosyl transferases group 1 Alide_0883 PF17102 Stealth protein CR3, conserved region 3 Alide_0883 PF17103 Stealth protein CR4, conserved region 4 Alide_0889 PF16363 GDP-mannose 4,6 dehydratase Alide_0890 PF00977 Histidine biosynthesis protein Alide_0891 PF01502 Phosphoribosyl-AMP cyclohydrolase Alide_0892 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Alide_0895 PF01230 HIT domain Alide_0896 PF02416 mttA/Hcf106 family Alide_0897 PF02416 mttA/Hcf106 family Alide_0898 PF00902 Sec-independent protein translocase protein (TatC) Alide_0899 PF13180 PDZ domain Alide_0899 PF17820 PDZ domain Alide_0900 PF01784 NIF3 (NGG1p interacting factor 3) Alide_0901 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Alide_0902 PF01741 Large-conductance mechanosensitive channel, MscL Alide_0903 PF00355 Rieske [2Fe-2S] domain Alide_0903 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Alide_0904 PF00033 Cytochrome b/b6/petB Alide_0904 PF00032 Cytochrome b(C-terminal)/b6/petD Alide_0905 PF02167 Cytochrome C1 family Alide_0906 PF00043 Glutathione S-transferase, C-terminal domain Alide_0906 PF02798 Glutathione S-transferase, N-terminal domain Alide_0907 PF04386 Stringent starvation protein B Alide_0909 PF07516 SecA Wing and Scaffold domain Alide_0909 PF01043 SecA preprotein cross-linking domain Alide_0909 PF07517 SecA DEAD-like domain Alide_0909 PF02810 SEC-C motif Alide_0912 PF00293 NUDIX domain Alide_0913 PF03884 DNA gyrase inhibitor YacG Alide_0914 PF07072 Cell division protein Alide_0915 PF01121 Dephospho-CoA kinase Alide_0916 PF06750 Bacterial Peptidase A24 N-terminal domain Alide_0916 PF01478 Type IV leader peptidase family Alide_0917 PF00482 Type II secretion system (T2SS), protein F Alide_0918 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alide_0918 PF00437 Type II/IV secretion system protein Alide_0921 PF13333 Integrase core domain Alide_0921 PF00665 Integrase core domain Alide_0921 PF13276 HTH-like domain Alide_0922 PF01527 Transposase Alide_0924 PF00589 Phage integrase family Alide_0925 PF00348 Polyprenyl synthetase Alide_0926 PF00829 Ribosomal prokaryotic L21 protein Alide_0927 PF01016 Ribosomal L27 protein Alide_0928 PF01018 GTP1/OBG Alide_0928 PF01926 50S ribosome-binding GTPase Alide_0929 PF00696 Amino acid kinase family Alide_0929 PF01472 PUA domain Alide_0930 PF00293 NUDIX domain Alide_0931 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alide_0931 PF04073 Aminoacyl-tRNA editing domain Alide_0931 PF03129 Anticodon binding domain Alide_0932 PF01464 Transglycosylase SLT domain Alide_0932 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Alide_0933 PF01595 Cyclin M transmembrane N-terminal domain Alide_0933 PF03471 Transporter associated domain Alide_0933 PF00571 CBS domain Alide_0934 PF02190 ATP-dependent protease La (LON) substrate-binding domain Alide_0934 PF00004 ATPase family associated with various cellular activities (AAA) Alide_0934 PF05362 Lon protease (S16) C-terminal proteolytic domain Alide_0935 PF00462 Glutaredoxin Alide_0936 PF17827 PrmC N-terminal domain Alide_0936 PF05175 Methyltransferase small domain Alide_0937 PF00472 RF-1 domain Alide_0937 PF03462 PCRF domain Alide_0938 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Alide_0938 PF01488 Shikimate / quinate 5-dehydrogenase Alide_0938 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Alide_0940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0940 PF03466 LysR substrate binding domain Alide_0941 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0943 PF12794 Mechanosensitive ion channel inner membrane domain 1 Alide_0943 PF00924 Mechanosensitive ion channel Alide_0943 PF12795 Mechanosensitive ion channel porin domain Alide_0944 PF03009 Glycerophosphoryl diester phosphodiesterase family Alide_0945 PF17912 MalK OB fold domain Alide_0945 PF00005 ABC transporter Alide_0946 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0947 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0948 PF13416 Bacterial extracellular solute-binding protein Alide_0949 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_0949 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_0953 PF01209 ubiE/COQ5 methyltransferase family Alide_0956 PF03109 ABC1 family Alide_0960 PF02938 GAD domain Alide_0960 PF01336 OB-fold nucleic acid binding domain Alide_0960 PF00152 tRNA synthetases class II (D, K and N) Alide_0963 PF13091 PLD-like domain Alide_0964 PF01227 GTP cyclohydrolase I Alide_0967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0967 PF00989 PAS fold Alide_0967 PF00512 His Kinase A (phospho-acceptor) domain Alide_0968 PF00196 Bacterial regulatory proteins, luxR family Alide_0968 PF00072 Response regulator receiver domain Alide_0969 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_0972 PF01810 LysE type translocator Alide_0973 PF01425 Amidase Alide_0974 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_0975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_0975 PF00005 ABC transporter Alide_0976 PF00005 ABC transporter Alide_0976 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_0977 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide_0977 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0978 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0979 PF00037 4Fe-4S binding domain Alide_0980 PF01195 Peptidyl-tRNA hydrolase Alide_0981 PF14693 Ribosomal protein TL5, C-terminal domain Alide_0981 PF01386 Ribosomal L25p family Alide_0982 PF14572 Phosphoribosyl synthetase-associated domain Alide_0982 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Alide_0983 PF00288 GHMP kinases N terminal domain Alide_0983 PF08544 GHMP kinases C terminal Alide_0986 PF06827 Zinc finger found in FPG and IleRS Alide_0986 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Alide_0986 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Alide_0988 PF00730 HhH-GPD superfamily base excision DNA repair protein Alide_0988 PF10576 Iron-sulfur binding domain of endonuclease III Alide_0988 PF00633 Helix-hairpin-helix motif Alide_0988 PF14815 NUDIX domain Alide_0989 PF03668 P-loop ATPase protein family Alide_0990 PF02463 RecF/RecN/SMC N terminal domain Alide_0991 PF01513 ATP-NAD kinase Alide_0992 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Alide_0992 PF01628 HrcA protein C terminal domain Alide_0993 PF03737 Aldolase/RraA Alide_0994 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_0994 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_0997 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0998 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0999 PF00005 ABC transporter Alide_1000 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1001 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1004 PF02682 Carboxyltransferase domain, subdomain C and D Alide_1005 PF02626 Carboxyltransferase domain, subdomain A and B Alide_1006 PF03746 LamB/YcsF family Alide_1008 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_1008 PF00289 Biotin carboxylase, N-terminal domain Alide_1008 PF02785 Biotin carboxylase C-terminal domain Alide_1011 PF06969 HemN C-terminal domain Alide_1011 PF04055 Radical SAM superfamily Alide_1012 PF01725 Ham1 family Alide_1013 PF01138 3' exoribonuclease family, domain 1 Alide_1013 PF03725 3' exoribonuclease family, domain 2 Alide_1015 PF03793 PASTA domain Alide_1015 PF00069 Protein kinase domain Alide_1016 PF03755 YicC-like family, N-terminal region Alide_1016 PF08340 Domain of unknown function (DUF1732) Alide_1030 PF17758 Proteasomal ATPase OB N-terminal domain Alide_1030 PF00004 ATPase family associated with various cellular activities (AAA) Alide_1030 PF16450 Proteasomal ATPase OB C-terminal domain Alide_1036 PF00625 Guanylate kinase Alide_1037 PF01192 RNA polymerase Rpb6 Alide_1038 PF13291 ACT domain Alide_1038 PF02824 TGS domain Alide_1038 PF04607 Region found in RelA / SpoT proteins Alide_1039 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide_1039 PF03449 Transcription elongation factor, N-terminal Alide_1041 PF00312 Ribosomal protein S15 Alide_1042 PF00575 S1 RNA binding domain Alide_1042 PF03725 3' exoribonuclease family, domain 2 Alide_1042 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Alide_1042 PF01138 3' exoribonuclease family, domain 1 Alide_1042 PF00013 KH domain Alide_1043 PF16197 Ketoacyl-synthetase C-terminal extension Alide_1043 PF00109 Beta-ketoacyl synthase, N-terminal domain Alide_1043 PF08240 Alcohol dehydrogenase GroES-like domain Alide_1043 PF02801 Beta-ketoacyl synthase, C-terminal domain Alide_1043 PF00550 Phosphopantetheine attachment site Alide_1043 PF00698 Acyl transferase domain Alide_1043 PF14765 Polyketide synthase dehydratase Alide_1043 PF08659 KR domain Alide_1044 PF00121 Triosephosphate isomerase Alide_1045 PF03840 Preprotein translocase SecG subunit Alide_1046 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Alide_1047 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Alide_1048 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Alide_1049 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Alide_1051 PF10531 SLBB domain Alide_1051 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide_1051 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alide_1052 PF00384 Molybdopterin oxidoreductase Alide_1052 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Alide_1052 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Alide_1053 PF00146 NADH dehydrogenase Alide_1054 PF12838 4Fe-4S dicluster domain Alide_1055 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Alide_1056 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Alide_1057 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alide_1057 PF00361 Proton-conducting membrane transporter Alide_1058 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Alide_1058 PF00361 Proton-conducting membrane transporter Alide_1059 PF00361 Proton-conducting membrane transporter Alide_1063 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Alide_1063 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide_1064 PF01119 DNA mismatch repair protein, C-terminal domain Alide_1064 PF08676 MutL C terminal dimerisation domain Alide_1066 PF09335 SNARE associated Golgi protein Alide_1067 PF01979 Amidohydrolase family Alide_1068 PF00860 Permease family Alide_1069 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1069 PF03466 LysR substrate binding domain Alide_1070 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alide_1070 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide_1071 PF00941 FAD binding domain in molybdopterin dehydrogenase Alide_1071 PF03450 CO dehydrogenase flavoprotein C-terminal domain Alide_1073 PF01520 N-acetylmuramoyl-L-alanine amidase Alide_1073 PF11741 AMIN domain Alide_1074 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Alide_1077 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1078 PF02899 Phage integrase, N-terminal SAM-like domain Alide_1078 PF00589 Phage integrase family Alide_1079 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_1079 PF08447 PAS fold Alide_1080 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1081 PF08668 HDOD domain Alide_1081 PF00563 EAL domain Alide_1082 PF08668 HDOD domain Alide_1082 PF00563 EAL domain Alide_1083 PF04305 Protein of unknown function (DUF455) Alide_1084 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_1085 PF01430 Hsp33 protein Alide_1086 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1087 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1088 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1089 PF00005 ABC transporter Alide_1090 PF04977 Septum formation initiator Alide_1091 PF03952 Enolase, N-terminal domain Alide_1091 PF00113 Enolase, C-terminal TIM barrel domain Alide_1093 PF00793 DAHP synthetase I family Alide_1094 PF00117 Glutamine amidotransferase class-I Alide_1094 PF06418 CTP synthase N-terminus Alide_1095 PF02441 Flavoprotein Alide_1095 PF04127 DNA / pantothenate metabolism flavoprotein Alide_1097 PF00692 dUTPase Alide_1098 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide_1099 PF08007 Cupin superfamily protein Alide_1101 PF06804 NlpB/DapX lipoprotein Alide_1102 PF00701 Dihydrodipicolinate synthetase family Alide_1106 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1106 PF00204 DNA gyrase B Alide_1106 PF01751 Toprim domain Alide_1106 PF00986 DNA gyrase B subunit, carboxyl terminus Alide_1107 PF00521 DNA gyrase/topoisomerase IV, subunit A Alide_1109 PF00753 Metallo-beta-lactamase superfamily Alide_1109 PF03772 Competence protein Alide_1110 PF00171 Aldehyde dehydrogenase family Alide_1111 PF00581 Rhodanese-like domain Alide_1114 PF02609 Exonuclease VII small subunit Alide_1115 PF00348 Polyprenyl synthetase Alide_1116 PF02780 Transketolase, C-terminal domain Alide_1116 PF02779 Transketolase, pyrimidine binding domain Alide_1116 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Alide_1117 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_1118 PF00270 DEAD/DEAH box helicase Alide_1118 PF08494 DEAD/H associated Alide_1118 PF00271 Helicase conserved C-terminal domain Alide_1119 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide_1121 PF00459 Inositol monophosphatase family Alide_1122 PF00588 SpoU rRNA Methylase family Alide_1123 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_1125 PF08240 Alcohol dehydrogenase GroES-like domain Alide_1125 PF00107 Zinc-binding dehydrogenase Alide_1126 PF00994 Probable molybdopterin binding domain Alide_1127 PF04751 Protein of unknown function (DUF615) Alide_1128 PF01523 Putative modulator of DNA gyrase Alide_1135 PF00717 Peptidase S24-like Alide_1135 PF01726 LexA DNA binding domain Alide_1136 PF01527 Transposase Alide_1142 PF10415 Fumarase C C-terminus Alide_1142 PF00206 Lyase Alide_1143 PF00027 Cyclic nucleotide-binding domain Alide_1143 PF13545 Crp-like helix-turn-helix domain Alide_1144 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Alide_1145 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1146 PF00571 CBS domain Alide_1146 PF00005 ABC transporter Alide_1148 PF07584 Aerotolerance regulator N-terminal Alide_1148 PF00092 von Willebrand factor type A domain Alide_1149 PF01882 Protein of unknown function DUF58 Alide_1150 PF07726 ATPase family associated with various cellular activities (AAA) Alide_1150 PF17863 AAA lid domain Alide_1151 PF00595 PDZ domain Alide_1152 PF02627 Carboxymuconolactone decarboxylase family Alide_1153 PF01022 Bacterial regulatory protein, arsR family Alide_1155 PF01026 TatD related DNase Alide_1158 PF00437 Type II/IV secretion system protein Alide_1160 PF01970 Tripartite tricarboxylate transporter TctA family Alide_1161 PF00106 short chain dehydrogenase Alide_1163 PF00563 EAL domain Alide_1163 PF00990 Diguanylate cyclase, GGDEF domain Alide_1163 PF03707 Bacterial signalling protein N terminal repeat Alide_1164 PF00892 EamA-like transporter family Alide_1165 PF08240 Alcohol dehydrogenase GroES-like domain Alide_1165 PF00107 Zinc-binding dehydrogenase Alide_1167 PF03466 LysR substrate binding domain Alide_1167 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1168 PF13593 SBF-like CPA transporter family (DUF4137) Alide_1169 PF02690 Na+/Pi-cotransporter Alide_1170 PF00149 Calcineurin-like phosphoesterase Alide_1171 PF08402 TOBE domain Alide_1171 PF00005 ABC transporter Alide_1172 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1173 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1175 PF00356 Bacterial regulatory proteins, lacI family Alide_1176 PF01252 Signal peptidase (SPase) II Alide_1177 PF06827 Zinc finger found in FPG and IleRS Alide_1177 PF08264 Anticodon-binding domain of tRNA Alide_1177 PF00133 tRNA synthetases class I (I, L, M and V) Alide_1178 PF01687 Riboflavin kinase Alide_1178 PF06574 FAD synthetase Alide_1180 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1181 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1181 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1181 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1182 PF04337 Protein of unknown function, DUF480 Alide_1183 PF00551 Formyl transferase Alide_1184 PF01189 16S rRNA methyltransferase RsmB/F Alide_1184 PF01029 NusB family Alide_1185 PF00471 Ribosomal protein L33 Alide_1186 PF00830 Ribosomal L28 family Alide_1187 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_1188 PF01580 FtsK/SpoIIIE family Alide_1188 PF09397 Ftsk gamma domain Alide_1188 PF17854 FtsK alpha domain Alide_1188 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Alide_1189 PF03548 Outer membrane lipoprotein carrier protein LolA Alide_1190 PF01040 UbiA prenyltransferase family Alide_1191 PF03167 Uracil DNA glycosylase superfamily Alide_1192 PF12002 MgsA AAA+ ATPase C terminal Alide_1192 PF00004 ATPase family associated with various cellular activities (AAA) Alide_1192 PF16193 AAA C-terminal domain Alide_1193 PF02653 Branched-chain amino acid transport system / permease component Alide_1194 PF02653 Branched-chain amino acid transport system / permease component Alide_1194 PF11862 Domain of unknown function (DUF3382) Alide_1195 PF00005 ABC transporter Alide_1195 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_1196 PF00005 ABC transporter Alide_1199 PF01865 Protein of unknown function DUF47 Alide_1200 PF01384 Phosphate transporter family Alide_1203 PF00886 Ribosomal protein S16 Alide_1204 PF05239 PRC-barrel domain Alide_1204 PF01782 RimM N-terminal domain Alide_1205 PF01746 tRNA (Guanine-1)-methyltransferase Alide_1206 PF01245 Ribosomal protein L19 Alide_1207 PF00293 NUDIX domain Alide_1208 PF03186 CobD/Cbib protein Alide_1208 PF17113 Regulatory signalling modulator protein AmpE Alide_1209 PF00155 Aminotransferase class I and II Alide_1210 PF01740 STAS domain Alide_1210 PF00916 Sulfate permease family Alide_1211 PF03193 RsgA GTPase Alide_1212 PF01329 Pterin 4 alpha carbinolamine dehydratase Alide_1213 PF01435 Peptidase family M48 Alide_1214 PF00929 Exonuclease Alide_1215 PF13458 Periplasmic binding protein Alide_1216 PF00271 Helicase conserved C-terminal domain Alide_1216 PF00270 DEAD/DEAH box helicase Alide_1217 PF08447 PAS fold Alide_1217 PF00563 EAL domain Alide_1217 PF00990 Diguanylate cyclase, GGDEF domain Alide_1217 PF05231 MASE1 Alide_1217 PF13426 PAS domain Alide_1217 PF08448 PAS fold Alide_1218 PF07690 Major Facilitator Superfamily Alide_1225 PF00005 ABC transporter Alide_1227 PF00593 TonB dependent receptor Alide_1227 PF07715 TonB-dependent Receptor Plug Domain Alide_1228 PF02514 CobN/Magnesium Chelatase Alide_1236 PF00145 C-5 cytosine-specific DNA methylase Alide_1242 PF05840 Bacteriophage replication gene A protein (GPA) Alide_1251 PF12826 Helix-hairpin-helix motif Alide_1251 PF01653 NAD-dependent DNA ligase adenylation domain Alide_1251 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Alide_1251 PF03120 NAD-dependent DNA ligase OB-fold domain Alide_1251 PF00533 BRCA1 C Terminus (BRCT) domain Alide_1286 PF00478 IMP dehydrogenase / GMP reductase domain Alide_1287 PF13361 UvrD-like helicase C-terminal domain Alide_1287 PF00580 UvrD/REP helicase N-terminal domain Alide_1289 PF00360 Phytochrome region Alide_1289 PF00990 Diguanylate cyclase, GGDEF domain Alide_1289 PF01590 GAF domain Alide_1289 PF00563 EAL domain Alide_1291 PF01636 Phosphotransferase enzyme family Alide_1294 PF01367 5'-3' exonuclease, C-terminal SAM fold Alide_1294 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Alide_1294 PF00476 DNA polymerase family A Alide_1294 PF01612 3'-5' exonuclease Alide_1295 PF03466 LysR substrate binding domain Alide_1295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1297 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1299 PF03466 LysR substrate binding domain Alide_1300 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1301 PF02515 CoA-transferase family III Alide_1302 PF00378 Enoyl-CoA hydratase/isomerase Alide_1303 PF01738 Dienelactone hydrolase family Alide_1305 PF04397 LytTr DNA-binding domain Alide_1305 PF00072 Response regulator receiver domain Alide_1307 PF08125 Mannitol dehydrogenase C-terminal domain Alide_1307 PF01232 Mannitol dehydrogenase Rossmann domain Alide_1309 PF02559 CarD-like/TRCF domain Alide_1309 PF00270 DEAD/DEAH box helicase Alide_1309 PF00271 Helicase conserved C-terminal domain Alide_1309 PF03461 TRCF domain Alide_1309 PF17757 UvrB interaction domain Alide_1310 PF02542 YgbB family Alide_1310 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Alide_1311 PF02542 YgbB family Alide_1312 PF00512 His Kinase A (phospho-acceptor) domain Alide_1312 PF00672 HAMP domain Alide_1312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1313 PF00486 Transcriptional regulatory protein, C terminal Alide_1313 PF00072 Response regulator receiver domain Alide_1315 PF00106 short chain dehydrogenase Alide_1317 PF13291 ACT domain Alide_1317 PF04607 Region found in RelA / SpoT proteins Alide_1317 PF02824 TGS domain Alide_1319 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Alide_1320 PF05233 PHB accumulation regulatory domain Alide_1320 PF07879 PHB/PHA accumulation regulator DNA-binding domain Alide_1321 PF00919 Uncharacterized protein family UPF0004 Alide_1321 PF18693 TRAM domain Alide_1321 PF04055 Radical SAM superfamily Alide_1322 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide_1324 PF03466 LysR substrate binding domain Alide_1324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1325 PF00682 HMGL-like Alide_1326 PF02515 CoA-transferase family III Alide_1327 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1328 PF08546 Ketopantoate reductase PanE/ApbA C terminal Alide_1328 PF02558 Ketopantoate reductase PanE/ApbA Alide_1331 PF04539 Sigma-70 region 3 Alide_1331 PF03979 Sigma-70 factor, region 1.1 Alide_1331 PF00140 Sigma-70 factor, region 1.2 Alide_1331 PF04542 Sigma-70 region 2 Alide_1331 PF04546 Sigma-70, non-essential region Alide_1331 PF04545 Sigma-70, region 4 Alide_1332 PF10410 DnaB-helicase binding domain of primase Alide_1332 PF01807 CHC2 zinc finger Alide_1332 PF08278 DNA primase DnaG DnaB-binding Alide_1332 PF08275 DNA primase catalytic core, N-terminal domain Alide_1333 PF13193 AMP-binding enzyme C-terminal domain Alide_1333 PF00501 AMP-binding enzyme Alide_1334 PF13091 PLD-like domain Alide_1335 PF03459 TOBE domain Alide_1335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1336 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1337 PF00005 ABC transporter Alide_1338 PF12849 PBP superfamily domain Alide_1340 PF03459 TOBE domain Alide_1340 PF00005 ABC transporter Alide_1341 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1343 PF03459 TOBE domain Alide_1343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1344 PF00005 ABC transporter Alide_1344 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_1345 PF00005 ABC transporter Alide_1348 PF02653 Branched-chain amino acid transport system / permease component Alide_1353 PF00011 Hsp20/alpha crystallin family Alide_1354 PF00005 ABC transporter Alide_1356 PF07690 Major Facilitator Superfamily Alide_1357 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_1357 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_1358 PF01230 HIT domain Alide_1359 PF13609 Gram-negative porin Alide_1361 PF05231 MASE1 Alide_1361 PF08447 PAS fold Alide_1361 PF00563 EAL domain Alide_1361 PF13426 PAS domain Alide_1361 PF08448 PAS fold Alide_1361 PF00990 Diguanylate cyclase, GGDEF domain Alide_1362 PF00005 ABC transporter Alide_1365 PF02608 ABC transporter substrate-binding protein PnrA-like Alide_1366 PF02608 ABC transporter substrate-binding protein PnrA-like Alide_1367 PF01266 FAD dependent oxidoreductase Alide_1368 PF00005 ABC transporter Alide_1370 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1371 PF01614 Bacterial transcriptional regulator Alide_1371 PF09339 IclR helix-turn-helix domain Alide_1373 PF00962 Adenosine/AMP deaminase Alide_1375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_1376 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_1376 PF00005 ABC transporter Alide_1377 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_1377 PF00005 ABC transporter Alide_1378 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide_1378 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1379 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1380 PF03466 LysR substrate binding domain Alide_1381 PF04199 Putative cyclase Alide_1382 PF03692 Putative zinc- or iron-chelating domain Alide_1384 PF07670 Nucleoside recognition Alide_1384 PF02421 Ferrous iron transport protein B Alide_1384 PF07664 Ferrous iron transport protein B C terminus Alide_1386 PF03692 Putative zinc- or iron-chelating domain Alide_1389 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Alide_1389 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Alide_1390 PF00202 Aminotransferase class-III Alide_1392 PF03737 Aldolase/RraA Alide_1394 PF01649 Ribosomal protein S20 Alide_1395 PF03023 Lipid II flippase MurJ Alide_1396 PF13369 Transglutaminase-like superfamily Alide_1397 PF00582 Universal stress protein family Alide_1399 PF00586 AIR synthase related protein, N-terminal domain Alide_1399 PF02769 AIR synthase related protein, C-terminal domain Alide_1401 PF00308 Bacterial dnaA protein Alide_1403 PF12626 Polymerase A arginine-rich C-terminus Alide_1403 PF12627 Probable RNA and SrmB- binding site of polymerase A Alide_1403 PF01743 Poly A polymerase head domain Alide_1404 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Alide_1405 PF00535 Glycosyl transferase family 2 Alide_1406 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Alide_1409 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1410 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1412 PF03466 LysR substrate binding domain Alide_1412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1413 PF00291 Pyridoxal-phosphate dependent enzyme Alide_1414 PF00970 Oxidoreductase FAD-binding domain Alide_1414 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_1414 PF00175 Oxidoreductase NAD-binding domain Alide_1419 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1420 PF02515 CoA-transferase family III Alide_1421 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1421 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1421 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1422 PF03466 LysR substrate binding domain Alide_1439 PF01527 Transposase Alide_1440 PF00665 Integrase core domain Alide_1440 PF13276 HTH-like domain Alide_1440 PF13333 Integrase core domain Alide_1445 PF13356 Arm DNA-binding domain Alide_1445 PF00589 Phage integrase family Alide_1447 PF00270 DEAD/DEAH box helicase Alide_1447 PF00271 Helicase conserved C-terminal domain Alide_1448 PF00005 ABC transporter Alide_1448 PF12848 ABC transporter Alide_1450 PF03576 Peptidase family S58 Alide_1455 PF00403 Heavy-metal-associated domain Alide_1456 PF13411 MerR HTH family regulatory protein Alide_1461 PF01256 Carbohydrate kinase Alide_1461 PF03853 YjeF-related protein N-terminus Alide_1462 PF01266 FAD dependent oxidoreductase Alide_1463 PF01425 Amidase Alide_1464 PF00318 Ribosomal protein S2 Alide_1465 PF00889 Elongation factor TS Alide_1466 PF00696 Amino acid kinase family Alide_1467 PF01765 Ribosome recycling factor Alide_1468 PF01255 Putative undecaprenyl diphosphate synthase Alide_1470 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Alide_1470 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Alide_1470 PF13288 DXP reductoisomerase C-terminal domain Alide_1471 PF02163 Peptidase family M50 Alide_1471 PF17820 PDZ domain Alide_1472 PF01103 Surface antigen Alide_1472 PF07244 Surface antigen variable number repeat Alide_1474 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Alide_1474 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_1474 PF14602 Hexapeptide repeat of succinyl-transferase Alide_1475 PF07977 FabA-like domain Alide_1476 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_1476 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Alide_1477 PF02684 Lipid-A-disaccharide synthetase Alide_1478 PF01351 Ribonuclease HII Alide_1479 PF00588 SpoU rRNA Methylase family Alide_1479 PF08032 RNA 2'-O ribose methyltransferase substrate binding Alide_1480 PF02899 Phage integrase, N-terminal SAM-like domain Alide_1480 PF00589 Phage integrase family Alide_1481 PF01527 Transposase Alide_1482 PF13333 Integrase core domain Alide_1482 PF00665 Integrase core domain Alide_1482 PF13276 HTH-like domain Alide_1484 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Alide_1485 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Alide_1485 PF01433 Peptidase family M1 domain Alide_1485 PF11940 Domain of unknown function (DUF3458) Ig-like fold Alide_1487 PF01113 Dihydrodipicolinate reductase, N-terminus Alide_1487 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain Alide_1490 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1491 PF00005 ABC transporter Alide_1491 PF08402 TOBE domain Alide_1492 PF00248 Aldo/keto reductase family Alide_1493 PF04073 Aminoacyl-tRNA editing domain Alide_1494 PF02660 Glycerol-3-phosphate acyltransferase Alide_1497 PF04461 Protein of unknown function (DUF520) Alide_1498 PF01565 FAD binding domain Alide_1498 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Alide_1500 PF02592 Putative vitamin uptake transporter Alide_1501 PF06508 Queuosine biosynthesis protein QueC Alide_1502 PF05378 Hydantoinase/oxoprolinase N-terminal region Alide_1502 PF01968 Hydantoinase/oxoprolinase Alide_1503 PF02538 Hydantoinase B/oxoprolinase Alide_1504 PF08882 Acetone carboxylase gamma subunit Alide_1505 PF00158 Sigma-54 interaction domain Alide_1505 PF02954 Bacterial regulatory protein, Fis family Alide_1505 PF01590 GAF domain Alide_1506 PF00764 Arginosuccinate synthase Alide_1507 PF06865 Pyrimidine/purine nucleoside phosphorylase Alide_1509 PF03960 ArsC family Alide_1510 PF02875 Mur ligase family, glutamate ligase domain Alide_1510 PF08245 Mur ligase middle domain Alide_1512 PF02674 Colicin V production protein Alide_1513 PF00156 Phosphoribosyl transferase domain Alide_1514 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide_1515 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alide_1516 PF00106 short chain dehydrogenase Alide_1520 PF13817 IS66 C-terminal element Alide_1520 PF13007 Transposase C of IS166 homeodomain Alide_1520 PF13005 zinc-finger binding domain of transposase IS66 Alide_1520 PF03050 Transposase IS66 family Alide_1524 PF13276 HTH-like domain Alide_1524 PF13683 Integrase core domain Alide_1525 PF01527 Transposase Alide_1529 PF01726 LexA DNA binding domain Alide_1529 PF00717 Peptidase S24-like Alide_1530 PF01527 Transposase Alide_1531 PF13276 HTH-like domain Alide_1531 PF00665 Integrase core domain Alide_1531 PF13333 Integrase core domain Alide_1533 PF09361 Phasin protein Alide_1535 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Alide_1535 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Alide_1537 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_1537 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_1538 PF02646 RmuC family Alide_1541 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Alide_1544 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Alide_1546 PF00361 Proton-conducting membrane transporter Alide_1547 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Alide_1548 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alide_1548 PF00361 Proton-conducting membrane transporter Alide_1548 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Alide_1548 PF13244 Domain of unknown function (DUF4040) Alide_1554 PF04279 Intracellular septation protein A Alide_1555 PF01641 SelR domain Alide_1559 PF02653 Branched-chain amino acid transport system / permease component Alide_1561 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_1561 PF00005 ABC transporter Alide_1562 PF00005 ABC transporter Alide_1563 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_1563 PF00378 Enoyl-CoA hydratase/isomerase Alide_1563 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_1564 PF00108 Thiolase, N-terminal domain Alide_1564 PF02803 Thiolase, C-terminal domain Alide_1565 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1566 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1567 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1568 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1568 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1568 PF12806 Acetyl-CoA dehydrogenase C-terminal like Alide_1568 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1580 PF00589 Phage integrase family Alide_1580 PF13356 Arm DNA-binding domain Alide_1581 PF02321 Outer membrane efflux protein Alide_1584 PF17922 Tetracyclin repressor-like, C-terminal domain Alide_1584 PF00440 Bacterial regulatory proteins, tetR family Alide_1585 PF01625 Peptide methionine sulfoxide reductase Alide_1587 PF00593 TonB dependent receptor Alide_1587 PF07715 TonB-dependent Receptor Plug Domain Alide_1591 PF01243 Pyridoxamine 5'-phosphate oxidase Alide_1591 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Alide_1596 PF17674 HHH domain Alide_1596 PF16921 Tex protein YqgF-like domain Alide_1596 PF00575 S1 RNA binding domain Alide_1596 PF09371 Tex-like protein N-terminal domain Alide_1597 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1600 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1602 PF00501 AMP-binding enzyme Alide_1602 PF13193 AMP-binding enzyme C-terminal domain Alide_1603 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1604 PF00356 Bacterial regulatory proteins, lacI family Alide_1606 PF02515 CoA-transferase family III Alide_1607 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1608 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1609 PF04909 Amidohydrolase Alide_1612 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_1613 PF07859 alpha/beta hydrolase fold Alide_1616 PF00072 Response regulator receiver domain Alide_1616 PF00196 Bacterial regulatory proteins, luxR family Alide_1617 PF00512 His Kinase A (phospho-acceptor) domain Alide_1617 PF13426 PAS domain Alide_1617 PF08448 PAS fold Alide_1617 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1617 PF00072 Response regulator receiver domain Alide_1618 PF07690 Major Facilitator Superfamily Alide_1619 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Alide_1621 PF02618 YceG-like family Alide_1622 PF02223 Thymidylate kinase Alide_1623 PF09115 DNA polymerase III, delta subunit, C terminal Alide_1625 PF01026 TatD related DNase Alide_1629 PF00392 Bacterial regulatory proteins, gntR family Alide_1629 PF07729 FCD domain Alide_1631 PF03746 LamB/YcsF family Alide_1632 PF07286 Protein of unknown function (DUF1445) Alide_1633 PF02682 Carboxyltransferase domain, subdomain C and D Alide_1634 PF00364 Biotin-requiring enzyme Alide_1634 PF02785 Biotin carboxylase C-terminal domain Alide_1634 PF00289 Biotin carboxylase, N-terminal domain Alide_1634 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_1635 PF00005 ABC transporter Alide_1635 PF00664 ABC transporter transmembrane region Alide_1636 PF04052 TolB amino-terminal domain Alide_1636 PF07676 WD40-like Beta Propeller Repeat Alide_1637 PF00691 OmpA family Alide_1638 PF16331 TolA binding protein trimerisation Alide_1638 PF13174 Tetratricopeptide repeat Alide_1639 PF00899 ThiF family Alide_1640 PF00589 Phage integrase family Alide_1640 PF02899 Phage integrase, N-terminal SAM-like domain Alide_1659 PF00565 Staphylococcal nuclease homologue Alide_1669 PF00772 DnaB-like helicase N terminal domain Alide_1669 PF03796 DnaB-like helicase C terminal domain Alide_1690 PF02481 DNA recombination-mediator protein A Alide_1715 PF05598 Transposase domain (DUF772) Alide_1715 PF01609 Transposase DDE domain Alide_1718 PF01695 IstB-like ATP binding protein Alide_1719 PF00665 Integrase core domain Alide_1724 PF13356 Arm DNA-binding domain Alide_1724 PF00589 Phage integrase family Alide_1727 PF01464 Transglycosylase SLT domain Alide_1727 PF01476 LysM domain Alide_1728 PF16123 Hydroxyacylglutathione hydrolase C-terminus Alide_1728 PF00753 Metallo-beta-lactamase superfamily Alide_1729 PF08241 Methyltransferase domain Alide_1730 PF00075 RNase H Alide_1732 PF03737 Aldolase/RraA Alide_1733 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_1733 PF03737 Aldolase/RraA Alide_1734 PF03466 LysR substrate binding domain Alide_1734 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1735 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1737 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1740 PF03453 MoeA N-terminal region (domain I and II) Alide_1740 PF03454 MoeA C-terminal region (domain IV) Alide_1740 PF00994 Probable molybdopterin binding domain Alide_1742 PF12804 MobA-like NTP transferase domain Alide_1743 PF06463 Molybdenum Cofactor Synthesis C Alide_1743 PF04055 Radical SAM superfamily Alide_1746 PF00171 Aldehyde dehydrogenase family Alide_1747 PF03030 Inorganic H+ pyrophosphatase Alide_1748 PF00719 Inorganic pyrophosphatase Alide_1749 PF01584 CheW-like domain Alide_1750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_1750 PF02203 Tar ligand binding domain homologue Alide_1750 PF00672 HAMP domain Alide_1753 PF00795 Carbon-nitrogen hydrolase Alide_1753 PF02540 NAD synthase Alide_1754 PF00543 Nitrogen regulatory protein P-II Alide_1755 PF03641 Possible lysine decarboxylase Alide_1756 PF01219 Prokaryotic diacylglycerol kinase Alide_1760 PF04542 Sigma-70 region 2 Alide_1760 PF08281 Sigma-70, region 4 Alide_1761 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide_1761 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_1761 PF00205 Thiamine pyrophosphate enzyme, central domain Alide_1762 PF10369 Small subunit of acetolactate synthase Alide_1763 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Alide_1763 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Alide_1764 PF01066 CDP-alcohol phosphatidyltransferase Alide_1765 PF13417 Glutathione S-transferase, N-terminal domain Alide_1767 PF07690 Major Facilitator Superfamily Alide_1769 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1769 PF03466 LysR substrate binding domain Alide_1770 PF08502 LeuA allosteric (dimerisation) domain Alide_1770 PF00682 HMGL-like Alide_1771 PF00682 HMGL-like Alide_1771 PF08502 LeuA allosteric (dimerisation) domain Alide_1772 PF00768 D-alanyl-D-alanine carboxypeptidase Alide_1773 PF01614 Bacterial transcriptional regulator Alide_1773 PF09339 IclR helix-turn-helix domain Alide_1774 PF00474 Sodium:solute symporter family Alide_1775 PF00171 Aldehyde dehydrogenase family Alide_1775 PF01619 Proline dehydrogenase Alide_1775 PF14850 DNA-binding domain of Proline dehydrogenase Alide_1775 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Alide_1776 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1776 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1776 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1778 PF13545 Crp-like helix-turn-helix domain Alide_1778 PF00027 Cyclic nucleotide-binding domain Alide_1779 PF00378 Enoyl-CoA hydratase/isomerase Alide_1780 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Alide_1780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_1780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_1782 PF02581 Thiamine monophosphate synthase Alide_1783 PF05690 Thiazole biosynthesis protein ThiG Alide_1785 PF01266 FAD dependent oxidoreductase Alide_1786 PF08543 Phosphomethylpyrimidine kinase Alide_1789 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_1790 PF11953 Domain of unknown function (DUF3470) Alide_1790 PF00037 4Fe-4S binding domain Alide_1791 PF00009 Elongation factor Tu GTP binding domain Alide_1792 PF01507 Phosphoadenosine phosphosulfate reductase family Alide_1793 PF01507 Phosphoadenosine phosphosulfate reductase family Alide_1796 PF01925 Sulfite exporter TauE/SafE Alide_1797 PF01266 FAD dependent oxidoreductase Alide_1797 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Alide_1798 PF03458 UPF0126 domain Alide_1799 PF04362 Bacterial Fe(2+) trafficking Alide_1804 PF13193 AMP-binding enzyme C-terminal domain Alide_1804 PF00501 AMP-binding enzyme Alide_1805 PF00108 Thiolase, N-terminal domain Alide_1805 PF02803 Thiolase, C-terminal domain Alide_1808 PF02653 Branched-chain amino acid transport system / permease component Alide_1810 PF00005 ABC transporter Alide_1810 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_1811 PF00005 ABC transporter Alide_1813 PF13193 AMP-binding enzyme C-terminal domain Alide_1813 PF00501 AMP-binding enzyme Alide_1819 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1819 PF01464 Transglycosylase SLT domain Alide_1821 PF01527 Transposase Alide_1822 PF00665 Integrase core domain Alide_1822 PF13276 HTH-like domain Alide_1822 PF13333 Integrase core domain Alide_1826 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_1826 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_1826 PF00403 Heavy-metal-associated domain Alide_1827 PF00403 Heavy-metal-associated domain Alide_1828 PF02411 MerT mercuric transport protein Alide_1829 PF09278 MerR, DNA binding Alide_1829 PF00376 MerR family regulatory protein Alide_1837 PF13333 Integrase core domain Alide_1837 PF00665 Integrase core domain Alide_1837 PF13276 HTH-like domain Alide_1838 PF01527 Transposase Alide_1840 PF13356 Arm DNA-binding domain Alide_1840 PF14659 Phage integrase, N-terminal SAM-like domain Alide_1840 PF00589 Phage integrase family Alide_1841 PF02082 Transcriptional regulator Alide_1844 PF02666 Phosphatidylserine decarboxylase Alide_1845 PF00005 ABC transporter Alide_1845 PF00571 CBS domain Alide_1846 PF01176 Translation initiation factor 1A / IF-1 Alide_1847 PF17158 Membrane-associated sensor, integral membrane domain Alide_1847 PF00990 Diguanylate cyclase, GGDEF domain Alide_1849 PF00216 Bacterial DNA-binding protein Alide_1850 PF00575 S1 RNA binding domain Alide_1851 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Alide_1852 PF02153 Prephenate dehydrogenase Alide_1853 PF01842 ACT domain Alide_1853 PF01817 Chorismate mutase type II Alide_1853 PF00800 Prephenate dehydratase Alide_1854 PF00266 Aminotransferase class-V Alide_1855 PF00521 DNA gyrase/topoisomerase IV, subunit A Alide_1855 PF03989 DNA gyrase C-terminal domain, beta-propeller Alide_1856 PF00691 OmpA family Alide_1858 PF13419 Haloacid dehalogenase-like hydrolase Alide_1860 PF00717 Peptidase S24-like Alide_1861 PF13438 Domain of unknown function (DUF4113) Alide_1861 PF00817 impB/mucB/samB family Alide_1861 PF11799 impB/mucB/samB family C-terminal domain Alide_1864 PF02796 Helix-turn-helix domain of resolvase Alide_1864 PF00239 Resolvase, N terminal domain Alide_1873 PF13007 Transposase C of IS166 homeodomain Alide_1873 PF13817 IS66 C-terminal element Alide_1873 PF03050 Transposase IS66 family Alide_1873 PF13005 zinc-finger binding domain of transposase IS66 Alide_1874 PF13276 HTH-like domain Alide_1874 PF13333 Integrase core domain Alide_1874 PF00665 Integrase core domain Alide_1875 PF01527 Transposase Alide_1878 PF01266 FAD dependent oxidoreductase Alide_1879 PF03466 LysR substrate binding domain Alide_1879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1880 PF04960 Glutaminase Alide_1881 PF01546 Peptidase family M20/M25/M40 Alide_1881 PF07687 Peptidase dimerisation domain Alide_1882 PF07690 Major Facilitator Superfamily Alide_1883 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1883 PF03466 LysR substrate binding domain Alide_1890 PF16884 N-terminal domain of oxidoreductase Alide_1890 PF00107 Zinc-binding dehydrogenase Alide_1893 PF07690 Major Facilitator Superfamily Alide_1894 PF00875 DNA photolyase Alide_1894 PF03441 FAD binding domain of DNA photolyase Alide_1896 PF08267 Cobalamin-independent synthase, N-terminal domain Alide_1896 PF01717 Cobalamin-independent synthase, Catalytic domain Alide_1897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1897 PF03466 LysR substrate binding domain Alide_1902 PF04303 PrpF protein Alide_1903 PF00694 Aconitase C-terminal domain Alide_1903 PF00330 Aconitase family (aconitate hydratase) Alide_1904 PF00285 Citrate synthase, C-terminal domain Alide_1906 PF01381 Helix-turn-helix Alide_1906 PF06114 IrrE N-terminal-like domain Alide_1906 PF09856 Predicted transcriptional regulator (DUF2083) Alide_1908 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_1910 PF01479 S4 domain Alide_1911 PF00512 His Kinase A (phospho-acceptor) domain Alide_1911 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1911 PF08521 Two-component sensor kinase N-terminal Alide_1912 PF00072 Response regulator receiver domain Alide_1912 PF00486 Transcriptional regulatory protein, C terminal Alide_1913 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1915 PF01970 Tripartite tricarboxylate transporter TctA family Alide_1916 PF10605 3HB-oligomer hydrolase (3HBOH) Alide_1921 PF00762 Ferrochelatase Alide_1922 PF13419 Haloacid dehalogenase-like hydrolase Alide_1923 PF00689 Cation transporting ATPase, C-terminus Alide_1923 PF00690 Cation transporter/ATPase, N-terminus Alide_1925 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide_1927 PF01264 Chorismate synthase Alide_1928 PF03477 ATP cone domain Alide_1929 PF00464 Serine hydroxymethyltransferase Alide_1930 PF01464 Transglycosylase SLT domain Alide_1930 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Alide_1933 PF00575 S1 RNA binding domain Alide_1933 PF00773 RNB domain Alide_1933 PF08206 Ribonuclease B OB domain Alide_1933 PF08461 Ribonuclease R winged-helix domain Alide_1933 PF17876 Cold shock domain Alide_1936 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_1936 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alide_1936 PF00034 Cytochrome c Alide_1937 PF00085 Thioredoxin Alide_1938 PF02576 RimP N-terminal domain Alide_1939 PF08529 NusA N-terminal domain Alide_1939 PF00575 S1 RNA binding domain Alide_1939 PF13184 NusA-like KH domain Alide_1940 PF08364 Bacterial translation initiation factor IF-2 associated region Alide_1940 PF04760 Translation initiation factor IF-2, N-terminal region Alide_1940 PF00009 Elongation factor Tu GTP binding domain Alide_1940 PF11987 Translation-initiation factor 2 Alide_1941 PF02033 Ribosome-binding factor A Alide_1942 PF01509 TruB family pseudouridylate synthase (N terminal domain) Alide_1942 PF16198 tRNA pseudouridylate synthase B C-terminal domain Alide_1945 PF00378 Enoyl-CoA hydratase/isomerase Alide_1947 PF04542 Sigma-70 region 2 Alide_1947 PF08281 Sigma-70, region 4 Alide_1949 PF01668 SmpB protein Alide_1950 PF03364 Polyketide cyclase / dehydrase and lipid transport Alide_1951 PF03658 RnfH family Ubiquitin Alide_1953 PF00571 CBS domain Alide_1953 PF00478 IMP dehydrogenase / GMP reductase domain Alide_1954 PF00117 Glutamine amidotransferase class-I Alide_1954 PF00958 GMP synthase C terminal domain Alide_1954 PF02540 NAD synthase Alide_1955 PF00589 Phage integrase family Alide_1955 PF13356 Arm DNA-binding domain Alide_1956 PF00285 Citrate synthase, C-terminal domain Alide_1957 PF03937 Flavinator of succinate dehydrogenase Alide_1958 PF13085 2Fe-2S iron-sulfur cluster binding domain Alide_1959 PF02910 Fumarate reductase flavoprotein C-term Alide_1959 PF00890 FAD binding domain Alide_1960 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Alide_1961 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Alide_1962 PF07702 UTRA domain Alide_1962 PF00392 Bacterial regulatory proteins, gntR family Alide_1963 PF00056 lactate/malate dehydrogenase, NAD binding domain Alide_1963 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Alide_1966 PF00330 Aconitase family (aconitate hydratase) Alide_1966 PF06434 Aconitate hydratase 2 N-terminus Alide_1966 PF11791 Aconitate B N-terminal domain Alide_1967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1967 PF03466 LysR substrate binding domain Alide_1968 PF18158 Adaptive response protein AidB N-terminal domain Alide_1968 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1968 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1969 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1970 PF02515 CoA-transferase family III Alide_1971 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_1971 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_1972 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_1972 PF01799 [2Fe-2S] binding domain Alide_1973 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alide_1973 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide_1974 PF00941 FAD binding domain in molybdopterin dehydrogenase Alide_1974 PF03450 CO dehydrogenase flavoprotein C-terminal domain Alide_1975 PF00004 ATPase family associated with various cellular activities (AAA) Alide_1975 PF02190 ATP-dependent protease La (LON) substrate-binding domain Alide_1975 PF05362 Lon protease (S16) C-terminal proteolytic domain Alide_1978 PF02625 XdhC and CoxI family Alide_1978 PF13478 XdhC Rossmann domain Alide_1979 PF12804 MobA-like NTP transferase domain Alide_1979 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_1984 PF00535 Glycosyl transferase family 2 Alide_1989 PF00072 Response regulator receiver domain Alide_1990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1990 PF00512 His Kinase A (phospho-acceptor) domain Alide_1992 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Alide_1993 PF00510 Cytochrome c oxidase subunit III Alide_1994 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_1995 PF06481 COX Aromatic Rich Motif Alide_1995 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Alide_1996 PF07690 Major Facilitator Superfamily Alide_1996 PF00083 Sugar (and other) transporter Alide_1998 PF02472 Biopolymer transport protein ExbD/TolR Alide_1999 PF01618 MotA/TolQ/ExbB proton channel family Alide_2000 PF03061 Thioesterase superfamily Alide_2001 PF00155 Aminotransferase class I and II Alide_2002 PF01029 NusB family Alide_2003 PF00885 6,7-dimethyl-8-ribityllumazine synthase Alide_2004 PF00925 GTP cyclohydrolase II Alide_2004 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Alide_2007 PF00106 short chain dehydrogenase Alide_2008 PF04262 Glutamate-cysteine ligase Alide_2009 PF12805 FUSC-like inner membrane protein yccS Alide_2011 PF01042 Endoribonuclease L-PSP Alide_2012 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2012 PF04324 BFD-like [2Fe-2S] binding domain Alide_2014 PF01266 FAD dependent oxidoreductase Alide_2015 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2016 PF03466 LysR substrate binding domain Alide_2016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2017 PF01926 50S ribosome-binding GTPase Alide_2019 PF00849 RNA pseudouridylate synthase Alide_2023 PF00565 Staphylococcal nuclease homologue Alide_2024 PF00892 EamA-like transporter family Alide_2025 PF00849 RNA pseudouridylate synthase Alide_2027 PF00206 Lyase Alide_2027 PF10415 Fumarase C C-terminus Alide_2030 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Alide_2030 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alide_2032 PF01220 Dehydroquinase class II Alide_2034 PF00472 RF-1 domain Alide_2035 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Alide_2036 PF02230 Phospholipase/Carboxylesterase Alide_2038 PF01037 Lrp/AsnC ligand binding domain Alide_2039 PF00456 Transketolase, thiamine diphosphate binding domain Alide_2039 PF17831 Pyruvate dehydrogenase E1 component middle domain Alide_2040 PF01425 Amidase Alide_2041 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2044 PF00216 Bacterial DNA-binding protein Alide_2078 PF06074 Protein of unknown function (DUF935) Alide_2079 PF04233 Phage Mu protein F like protein Alide_2083 PF10124 Mu-like prophage major head subunit gpT Alide_2091 PF06791 Prophage tail length tape measure protein Alide_2104 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2105 PF03466 LysR substrate binding domain Alide_2106 PF00392 Bacterial regulatory proteins, gntR family Alide_2106 PF07729 FCD domain Alide_2107 PF07690 Major Facilitator Superfamily Alide_2108 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_2108 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_2109 PF01370 NAD dependent epimerase/dehydratase family Alide_2110 PF17042 Nucleotide-binding C-terminal domain Alide_2110 PF07005 Sugar-binding N-terminal domain Alide_2111 PF00596 Class II Aldolase and Adducin N-terminal domain Alide_2112 PF01261 Xylose isomerase-like TIM barrel Alide_2113 PF06167 Glucose-regulated metallo-peptidase M90 Alide_2114 PF00149 Calcineurin-like phosphoesterase Alide_2115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alide_2116 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alide_2119 PF01406 tRNA synthetases class I (C) catalytic domain Alide_2119 PF09190 DALR domain Alide_2121 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Alide_2122 PF01171 PP-loop family Alide_2122 PF09179 TilS substrate binding domain Alide_2123 PF13840 ACT domain Alide_2123 PF01842 ACT domain Alide_2123 PF00696 Amino acid kinase family Alide_2124 PF00654 Voltage gated chloride channel Alide_2126 PF00665 Integrase core domain Alide_2126 PF13333 Integrase core domain Alide_2126 PF13276 HTH-like domain Alide_2127 PF01527 Transposase Alide_2130 PF00005 ABC transporter Alide_2131 PF13406 Transglycosylase SLT domain Alide_2132 PF00929 Exonuclease Alide_2132 PF08411 Exonuclease C-terminal Alide_2133 PF02146 Sir2 family Alide_2134 PF01594 AI-2E family transporter Alide_2135 PF13302 Acetyltransferase (GNAT) domain Alide_2137 PF00291 Pyridoxal-phosphate dependent enzyme Alide_2138 PF01709 Transcriptional regulator Alide_2140 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Alide_2140 PF12801 4Fe-4S binding domain Alide_2140 PF13746 4Fe-4S dicluster domain Alide_2141 PF01654 Cytochrome bd terminal oxidase subunit I Alide_2142 PF02322 Cytochrome bd terminal oxidase subunit II Alide_2144 PF04172 LrgB-like family Alide_2146 PF00392 Bacterial regulatory proteins, gntR family Alide_2146 PF00155 Aminotransferase class I and II Alide_2147 PF00043 Glutathione S-transferase, C-terminal domain Alide_2147 PF02798 Glutathione S-transferase, N-terminal domain Alide_2148 PF05872 Bacterial protein of unknown function (DUF853) Alide_2149 PF01709 Transcriptional regulator Alide_2150 PF02844 Phosphoribosylglycinamide synthetase, N domain Alide_2150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Alide_2150 PF02843 Phosphoribosylglycinamide synthetase, C domain Alide_2151 PF01218 Coproporphyrinogen III oxidase Alide_2153 PF02590 Predicted SPOUT methyltransferase Alide_2154 PF02545 Maf-like protein Alide_2158 PF17805 AsnC-like ligand binding domain Alide_2159 PF17805 AsnC-like ligand binding domain Alide_2159 PF13404 AsnC-type helix-turn-helix domain Alide_2161 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_2162 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_2163 PF14824 Sirohaem biosynthesis protein central Alide_2163 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide_2163 PF10414 Sirohaem synthase dimerisation region Alide_2164 PF10150 Ribonuclease E/G family Alide_2164 PF00575 S1 RNA binding domain Alide_2165 PF05230 MASE2 domain Alide_2165 PF00990 Diguanylate cyclase, GGDEF domain Alide_2167 PF00155 Aminotransferase class I and II Alide_2168 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2168 PF03466 LysR substrate binding domain Alide_2172 PF00883 Cytosol aminopeptidase family, catalytic domain Alide_2172 PF02789 Cytosol aminopeptidase family, N-terminal domain Alide_2175 PF13458 Periplasmic binding protein Alide_2176 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_2176 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_2182 PF00582 Universal stress protein family Alide_2183 PF01814 Hemerythrin HHE cation binding domain Alide_2184 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2185 PF02803 Thiolase, C-terminal domain Alide_2185 PF00108 Thiolase, N-terminal domain Alide_2186 PF00106 short chain dehydrogenase Alide_2187 PF00849 RNA pseudouridylate synthase Alide_2188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2188 PF08448 PAS fold Alide_2188 PF00072 Response regulator receiver domain Alide_2188 PF00512 His Kinase A (phospho-acceptor) domain Alide_2188 PF13188 PAS domain Alide_2189 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide_2189 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Alide_2190 PF00196 Bacterial regulatory proteins, luxR family Alide_2190 PF00072 Response regulator receiver domain Alide_2193 PF08534 Redoxin Alide_2198 PF08281 Sigma-70, region 4 Alide_2198 PF04542 Sigma-70 region 2 Alide_2200 PF05958 tRNA (Uracil-5-)-methyltransferase Alide_2201 PF00291 Pyridoxal-phosphate dependent enzyme Alide_2202 PF01205 Uncharacterized protein family UPF0029 Alide_2202 PF09186 Domain of unknown function (DUF1949) Alide_2203 PF00127 Copper binding proteins, plastocyanin/azurin family Alide_2204 PF08497 Radical SAM N-terminal Alide_2204 PF11842 Domain of unknown function (DUF3362) Alide_2204 PF04055 Radical SAM superfamily Alide_2205 PF00155 Aminotransferase class I and II Alide_2207 PF02082 Transcriptional regulator Alide_2208 PF00266 Aminotransferase class-V Alide_2209 PF01592 NifU-like N terminal domain Alide_2210 PF01521 Iron-sulphur cluster biosynthesis Alide_2211 PF07743 HSCB C-terminal oligomerisation domain Alide_2212 PF00012 Hsp70 protein Alide_2213 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_2214 PF00929 Exonuclease Alide_2215 PF01266 FAD dependent oxidoreductase Alide_2219 PF01180 Dihydroorotate dehydrogenase Alide_2220 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Alide_2222 PF01432 Peptidase family M3 Alide_2223 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Alide_2223 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Alide_2224 PF00196 Bacterial regulatory proteins, luxR family Alide_2224 PF00072 Response regulator receiver domain Alide_2225 PF00512 His Kinase A (phospho-acceptor) domain Alide_2225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2225 PF00989 PAS fold Alide_2226 PF00456 Transketolase, thiamine diphosphate binding domain Alide_2226 PF17831 Pyruvate dehydrogenase E1 component middle domain Alide_2227 PF00364 Biotin-requiring enzyme Alide_2227 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_2227 PF02817 e3 binding domain Alide_2228 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2228 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_2231 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2233 PF03466 LysR substrate binding domain Alide_2233 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2234 PF03737 Aldolase/RraA Alide_2235 PF03972 MmgE/PrpD family Alide_2236 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2239 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_2239 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_2243 PF00877 NlpC/P60 family Alide_2244 PF00324 Amino acid permease Alide_2246 PF07690 Major Facilitator Superfamily Alide_2247 PF00990 Diguanylate cyclase, GGDEF domain Alide_2247 PF03707 Bacterial signalling protein N terminal repeat Alide_2247 PF00563 EAL domain Alide_2248 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Alide_2250 PF06470 SMC proteins Flexible Hinge Domain Alide_2250 PF02463 RecF/RecN/SMC N terminal domain Alide_2252 PF03120 NAD-dependent DNA ligase OB-fold domain Alide_2252 PF12826 Helix-hairpin-helix motif Alide_2252 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Alide_2252 PF00533 BRCA1 C Terminus (BRCT) domain Alide_2252 PF01653 NAD-dependent DNA ligase adenylation domain Alide_2253 PF01734 Patatin-like phospholipase Alide_2254 PF00905 Penicillin binding protein transpeptidase domain Alide_2254 PF17092 Penicillin-binding protein OB-like domain Alide_2254 PF00912 Transglycosylase Alide_2255 PF07690 Major Facilitator Superfamily Alide_2257 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_2258 PF13417 Glutathione S-transferase, N-terminal domain Alide_2261 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Alide_2262 PF00108 Thiolase, N-terminal domain Alide_2262 PF02803 Thiolase, C-terminal domain Alide_2263 PF00106 short chain dehydrogenase Alide_2264 PF12848 ABC transporter Alide_2264 PF00005 ABC transporter Alide_2265 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2266 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2266 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2266 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2267 PF13193 AMP-binding enzyme C-terminal domain Alide_2267 PF00501 AMP-binding enzyme Alide_2268 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2268 PF03466 LysR substrate binding domain Alide_2269 PF05175 Methyltransferase small domain Alide_2270 PF01546 Peptidase family M20/M25/M40 Alide_2270 PF07687 Peptidase dimerisation domain Alide_2271 PF00437 Type II/IV secretion system protein Alide_2272 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Alide_2272 PF14602 Hexapeptide repeat of succinyl-transferase Alide_2273 PF00155 Aminotransferase class I and II Alide_2274 PF04060 Putative Fe-S cluster Alide_2277 PF01207 Dihydrouridine synthase (Dus) Alide_2279 PF00440 Bacterial regulatory proteins, tetR family Alide_2281 PF00501 AMP-binding enzyme Alide_2282 PF07729 FCD domain Alide_2282 PF00392 Bacterial regulatory proteins, gntR family Alide_2283 PF00682 HMGL-like Alide_2284 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2285 PF02515 CoA-transferase family III Alide_2286 PF01381 Helix-turn-helix Alide_2286 PF06114 IrrE N-terminal-like domain Alide_2286 PF09856 Predicted transcriptional regulator (DUF2083) Alide_2289 PF01039 Carboxyl transferase domain Alide_2290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_2290 PF02785 Biotin carboxylase C-terminal domain Alide_2290 PF00289 Biotin carboxylase, N-terminal domain Alide_2292 PF06968 Biotin and Thiamin Synthesis associated domain Alide_2292 PF04055 Radical SAM superfamily Alide_2293 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2294 PF00072 Response regulator receiver domain Alide_2294 PF00486 Transcriptional regulatory protein, C terminal Alide_2295 PF00512 His Kinase A (phospho-acceptor) domain Alide_2295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2295 PF08521 Two-component sensor kinase N-terminal Alide_2298 PF00581 Rhodanese-like domain Alide_2301 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2302 PF02321 Outer membrane efflux protein Alide_2303 PF00873 AcrB/AcrD/AcrF family Alide_2305 PF01022 Bacterial regulatory protein, arsR family Alide_2307 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_2309 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2310 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2311 PF00356 Bacterial regulatory proteins, lacI family Alide_2317 PF08019 Phosphoethanolamine transferase EptA/EptB Alide_2317 PF00884 Sulfatase Alide_2319 PF00486 Transcriptional regulatory protein, C terminal Alide_2319 PF00072 Response regulator receiver domain Alide_2320 PF00512 His Kinase A (phospho-acceptor) domain Alide_2320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2320 PF08521 Two-component sensor kinase N-terminal Alide_2321 PF00378 Enoyl-CoA hydratase/isomerase Alide_2322 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2323 PF00107 Zinc-binding dehydrogenase Alide_2323 PF08240 Alcohol dehydrogenase GroES-like domain Alide_2324 PF02515 CoA-transferase family III Alide_2325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2325 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2327 PF02515 CoA-transferase family III Alide_2331 PF02653 Branched-chain amino acid transport system / permease component Alide_2332 PF00005 ABC transporter Alide_2333 PF01590 GAF domain Alide_2333 PF00158 Sigma-54 interaction domain Alide_2333 PF02954 Bacterial regulatory protein, Fis family Alide_2334 PF00561 alpha/beta hydrolase fold Alide_2334 PF00364 Biotin-requiring enzyme Alide_2335 PF00732 GMC oxidoreductase Alide_2335 PF05199 GMC oxidoreductase Alide_2337 PF03099 Biotin/lipoate A/B protein ligase family Alide_2338 PF02817 e3 binding domain Alide_2338 PF00364 Biotin-requiring enzyme Alide_2338 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_2339 PF00364 Biotin-requiring enzyme Alide_2339 PF02779 Transketolase, pyrimidine binding domain Alide_2339 PF02780 Transketolase, C-terminal domain Alide_2340 PF02779 Transketolase, pyrimidine binding domain Alide_2340 PF02780 Transketolase, C-terminal domain Alide_2341 PF00676 Dehydrogenase E1 component Alide_2342 PF01037 Lrp/AsnC ligand binding domain Alide_2343 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_2345 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide_2346 PF12706 Beta-lactamase superfamily domain Alide_2346 PF00753 Metallo-beta-lactamase superfamily Alide_2347 PF01571 Aminomethyltransferase folate-binding domain Alide_2347 PF08669 Glycine cleavage T-protein C-terminal barrel domain Alide_2348 PF01597 Glycine cleavage H-protein Alide_2349 PF02347 Glycine cleavage system P-protein Alide_2350 PF02583 Metal-sensitive transcriptional repressor Alide_2351 PF08240 Alcohol dehydrogenase GroES-like domain Alide_2351 PF00107 Zinc-binding dehydrogenase Alide_2352 PF00756 Putative esterase Alide_2355 PF04055 Radical SAM superfamily Alide_2356 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide_2356 PF14760 Rnk N-terminus Alide_2359 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2359 PF12806 Acetyl-CoA dehydrogenase C-terminal like Alide_2359 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2359 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2360 PF01012 Electron transfer flavoprotein domain Alide_2360 PF00766 Electron transfer flavoprotein FAD-binding domain Alide_2361 PF01012 Electron transfer flavoprotein domain Alide_2362 PF00378 Enoyl-CoA hydratase/isomerase Alide_2363 PF00850 Histone deacetylase domain Alide_2364 PF17863 AAA lid domain Alide_2364 PF07726 ATPase family associated with various cellular activities (AAA) Alide_2366 PF11992 Domain of unknown function (DUF3488) Alide_2366 PF13559 Domain of unknown function (DUF4129) Alide_2366 PF01841 Transglutaminase-like superfamily Alide_2367 PF13406 Transglycosylase SLT domain Alide_2368 PF02779 Transketolase, pyrimidine binding domain Alide_2368 PF02780 Transketolase, C-terminal domain Alide_2369 PF00456 Transketolase, thiamine diphosphate binding domain Alide_2370 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide_2372 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Alide_2372 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_2374 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2374 PF03466 LysR substrate binding domain Alide_2375 PF02779 Transketolase, pyrimidine binding domain Alide_2375 PF00456 Transketolase, thiamine diphosphate binding domain Alide_2375 PF02780 Transketolase, C-terminal domain Alide_2376 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_2376 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_2377 PF03466 LysR substrate binding domain Alide_2377 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2378 PF03601 Conserved hypothetical protein 698 Alide_2379 PF13458 Periplasmic binding protein Alide_2381 PF00005 ABC transporter Alide_2381 PF12704 MacB-like periplasmic core domain Alide_2381 PF02687 FtsX-like permease family Alide_2382 PF12704 MacB-like periplasmic core domain Alide_2382 PF02687 FtsX-like permease family Alide_2382 PF00005 ABC transporter Alide_2383 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide_2384 PF02321 Outer membrane efflux protein Alide_2385 PF00814 Glycoprotease family Alide_2386 PF00478 IMP dehydrogenase / GMP reductase domain Alide_2386 PF00571 CBS domain Alide_2388 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide_2388 PF00529 HlyD membrane-fusion protein of T1SS Alide_2389 PF00873 AcrB/AcrD/AcrF family Alide_2390 PF02321 Outer membrane efflux protein Alide_2391 PF18267 Rubredoxin NAD+ reductase C-terminal domain Alide_2391 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2391 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Alide_2391 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Alide_2391 PF04324 BFD-like [2Fe-2S] binding domain Alide_2392 PF00355 Rieske [2Fe-2S] domain Alide_2393 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide_2393 PF01568 Molydopterin dinucleotide binding domain Alide_2393 PF00384 Molybdopterin oxidoreductase Alide_2393 PF04324 BFD-like [2Fe-2S] binding domain Alide_2394 PF07690 Major Facilitator Superfamily Alide_2396 PF00591 Glycosyl transferase family, a/b domain Alide_2396 PF02885 Glycosyl transferase family, helical bundle domain Alide_2397 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide_2398 PF03061 Thioesterase superfamily Alide_2402 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2403 PF13193 AMP-binding enzyme C-terminal domain Alide_2403 PF00501 AMP-binding enzyme Alide_2404 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2404 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2404 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2405 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2406 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_2406 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2407 PF00364 Biotin-requiring enzyme Alide_2407 PF02817 e3 binding domain Alide_2407 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_2408 PF00378 Enoyl-CoA hydratase/isomerase Alide_2409 PF02780 Transketolase, C-terminal domain Alide_2409 PF02779 Transketolase, pyrimidine binding domain Alide_2410 PF00676 Dehydrogenase E1 component Alide_2411 PF01575 MaoC like domain Alide_2415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2415 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2418 PF01883 Iron-sulfur cluster assembly protein Alide_2419 PF01592 NifU-like N terminal domain Alide_2420 PF00266 Aminotransferase class-V Alide_2422 PF00005 ABC transporter Alide_2423 PF01458 Uncharacterized protein family (UPF0051) Alide_2424 PF01165 Ribosomal protein S21 Alide_2427 PF01144 Coenzyme A transferase Alide_2428 PF01144 Coenzyme A transferase Alide_2430 PF01757 Acyltransferase family Alide_2431 PF00583 Acetyltransferase (GNAT) family Alide_2431 PF00696 Amino acid kinase family Alide_2433 PF01266 FAD dependent oxidoreductase Alide_2436 PF02653 Branched-chain amino acid transport system / permease component Alide_2438 PF00005 ABC transporter Alide_2438 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_2439 PF00005 ABC transporter Alide_2440 PF13458 Periplasmic binding protein Alide_2441 PF00701 Dihydrodipicolinate synthetase family Alide_2443 PF00392 Bacterial regulatory proteins, gntR family Alide_2443 PF07729 FCD domain Alide_2444 PF01966 HD domain Alide_2445 PF02600 Disulfide bond formation protein DsbB Alide_2446 PF17850 CysA C-terminal regulatory domain Alide_2446 PF00005 ABC transporter Alide_2446 PF12857 TOBE-like domain Alide_2447 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2448 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2451 PF03466 LysR substrate binding domain Alide_2451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2452 PF02525 Flavodoxin-like fold Alide_2453 PF03358 NADPH-dependent FMN reductase Alide_2454 PF03180 NLPA lipoprotein Alide_2455 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2456 PF00005 ABC transporter Alide_2456 PF09383 NIL domain Alide_2458 PF02132 RecR protein Alide_2458 PF13662 Toprim domain Alide_2459 PF02575 YbaB/EbfC DNA-binding family Alide_2460 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Alide_2460 PF12170 DNA polymerase III tau subunit V interacting with alpha Alide_2460 PF12169 DNA polymerase III subunits gamma and tau domain III Alide_2461 PF03459 TOBE domain Alide_2461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2462 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Alide_2462 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Alide_2463 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2468 PF00005 ABC transporter Alide_2469 PF01032 FecCD transport family Alide_2472 PF07715 TonB-dependent Receptor Plug Domain Alide_2472 PF00593 TonB dependent receptor Alide_2475 PF02678 Pirin Alide_2475 PF05726 Pirin C-terminal cupin domain Alide_2476 PF02678 Pirin Alide_2476 PF05726 Pirin C-terminal cupin domain Alide_2477 PF00580 UvrD/REP helicase N-terminal domain Alide_2477 PF13361 UvrD-like helicase C-terminal domain Alide_2477 PF12705 PD-(D/E)XK nuclease superfamily Alide_2478 PF12705 PD-(D/E)XK nuclease superfamily Alide_2479 PF00085 Thioredoxin Alide_2480 PF07497 Rho termination factor, RNA-binding domain Alide_2480 PF07498 Rho termination factor, N-terminal domain Alide_2480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide_2481 PF01197 Ribosomal protein L31 Alide_2483 PF01554 MatE Alide_2484 PF00989 PAS fold Alide_2484 PF11808 Phosphate regulon sensor protein PhoR Alide_2484 PF00512 His Kinase A (phospho-acceptor) domain Alide_2484 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2485 PF00072 Response regulator receiver domain Alide_2485 PF00486 Transcriptional regulatory protein, C terminal Alide_2486 PF01895 PhoU domain Alide_2487 PF00005 ABC transporter Alide_2488 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2489 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2490 PF12849 PBP superfamily domain Alide_2491 PF02541 Ppx/GppA phosphatase family Alide_2492 PF00300 Histidine phosphatase superfamily (branch 1) Alide_2493 PF13090 Polyphosphate kinase C-terminal domain 2 Alide_2493 PF13089 Polyphosphate kinase N-terminal domain Alide_2493 PF17941 Polyphosphate kinase C-terminal domain 1 Alide_2493 PF02503 Polyphosphate kinase middle domain Alide_2495 PF00990 Diguanylate cyclase, GGDEF domain Alide_2495 PF00563 EAL domain Alide_2495 PF03707 Bacterial signalling protein N terminal repeat Alide_2496 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Alide_2496 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Alide_2496 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Alide_2496 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alide_2497 PF00809 Pterin binding enzyme Alide_2498 PF00004 ATPase family associated with various cellular activities (AAA) Alide_2498 PF17862 AAA+ lid domain Alide_2498 PF06480 FtsH Extracellular Alide_2498 PF01434 Peptidase family M41 Alide_2499 PF01728 FtsJ-like methyltransferase Alide_2500 PF01985 CRS1 / YhbY (CRM) domain Alide_2503 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide_2503 PF03449 Transcription elongation factor, N-terminal Alide_2504 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Alide_2504 PF02142 MGS-like domain Alide_2504 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_2505 PF00117 Glutamine amidotransferase class-I Alide_2505 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Alide_2506 PF13411 MerR HTH family regulatory protein Alide_2507 PF00216 Bacterial DNA-binding protein Alide_2508 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Alide_2508 PF01588 Putative tRNA binding domain Alide_2508 PF03147 Ferredoxin-fold anticodon binding domain Alide_2508 PF03484 tRNA synthetase B5 domain Alide_2508 PF03483 B3/4 domain Alide_2509 PF01409 tRNA synthetases class II core domain (F) Alide_2509 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Alide_2510 PF00453 Ribosomal protein L20 Alide_2511 PF01632 Ribosomal protein L35 Alide_2512 PF05198 Translation initiation factor IF-3, N-terminal domain Alide_2512 PF00707 Translation initiation factor IF-3, C-terminal domain Alide_2513 PF02824 TGS domain Alide_2513 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Alide_2513 PF03129 Anticodon binding domain Alide_2513 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alide_2516 PF00463 Isocitrate lyase family Alide_2521 PF01618 MotA/TolQ/ExbB proton channel family Alide_2522 PF02472 Biopolymer transport protein ExbD/TolR Alide_2524 PF03928 Haem-degrading Alide_2525 PF01027 Inhibitor of apoptosis-promoting Bax1 Alide_2527 PF07690 Major Facilitator Superfamily Alide_2529 PF00893 Small Multidrug Resistance protein Alide_2530 PF02417 Chromate transporter Alide_2532 PF02146 Sir2 family Alide_2534 PF07237 Protein of unknown function (DUF1428) Alide_2541 PF00588 SpoU rRNA Methylase family Alide_2541 PF08032 RNA 2'-O ribose methyltransferase substrate binding Alide_2542 PF00375 Sodium:dicarboxylate symporter family Alide_2543 PF00005 ABC transporter Alide_2544 PF13472 GDSL-like Lipase/Acylhydrolase family Alide_2546 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide_2548 PF00916 Sulfate permease family Alide_2548 PF01740 STAS domain Alide_2549 PF05230 MASE2 domain Alide_2549 PF00990 Diguanylate cyclase, GGDEF domain Alide_2550 PF10609 NUBPL iron-transfer P-loop NTPase Alide_2551 PF16177 Acetyl-coenzyme A synthetase N-terminus Alide_2551 PF13193 AMP-binding enzyme C-terminal domain Alide_2551 PF00501 AMP-binding enzyme Alide_2553 PF07995 Glucose / Sorbosone dehydrogenase Alide_2554 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2554 PF03466 LysR substrate binding domain Alide_2555 PF00171 Aldehyde dehydrogenase family Alide_2557 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2557 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2557 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2559 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_2559 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_2562 PF00291 Pyridoxal-phosphate dependent enzyme Alide_2563 PF04320 Protein with unknown function (DUF469) Alide_2564 PF08666 SAF domain Alide_2564 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Alide_2565 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2566 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Alide_2566 PF13378 Enolase C-terminal domain-like Alide_2568 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2569 PF00701 Dihydrodipicolinate synthetase family Alide_2570 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2571 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_2571 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_2572 PF13378 Enolase C-terminal domain-like Alide_2573 PF00171 Aldehyde dehydrogenase family Alide_2574 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Alide_2575 PF04377 Arginine-tRNA-protein transferase, C terminus Alide_2575 PF04376 Arginine-tRNA-protein transferase, N terminus Alide_2576 PF17954 Quercetinase C-terminal cupin domain Alide_2576 PF02678 Pirin Alide_2577 PF03466 LysR substrate binding domain Alide_2577 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2578 PF01593 Flavin containing amine oxidoreductase Alide_2579 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alide_2580 PF02390 Putative methyltransferase Alide_2581 PF17158 Membrane-associated sensor, integral membrane domain Alide_2581 PF00990 Diguanylate cyclase, GGDEF domain Alide_2582 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Alide_2582 PF01411 tRNA synthetases class II (A) Alide_2582 PF02272 DHHA1 domain Alide_2583 PF00701 Dihydrodipicolinate synthetase family Alide_2585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide_2586 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_2587 PF02615 Malate/L-lactate dehydrogenase Alide_2588 PF07729 FCD domain Alide_2588 PF00392 Bacterial regulatory proteins, gntR family Alide_2589 PF00849 RNA pseudouridylate synthase Alide_2590 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_2590 PF13380 CoA binding domain Alide_2590 PF00583 Acetyltransferase (GNAT) family Alide_2591 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Alide_2591 PF00534 Glycosyl transferases group 1 Alide_2592 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Alide_2592 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Alide_2592 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alide_2592 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Alide_2593 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2594 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2595 PF04962 KduI/IolB family Alide_2596 PF00294 pfkB family carbohydrate kinase Alide_2598 PF12833 Helix-turn-helix domain Alide_2598 PF02805 Metal binding domain of Ada Alide_2599 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Alide_2599 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Alide_2601 PF00211 Adenylate and Guanylate cyclase catalytic domain Alide_2601 PF16701 Adenylate cyclase regulatory domain Alide_2602 PF17676 LD-carboxypeptidase C-terminal domain Alide_2602 PF02016 LD-carboxypeptidase N-terminal domain Alide_2603 PF14437 MafB19-like deaminase Alide_2605 PF12392 Collagenase Alide_2605 PF01136 Peptidase family U32 Alide_2606 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide_2607 PF12867 DinB superfamily Alide_2607 PF03781 Sulfatase-modifying factor enzyme 1 Alide_2608 PF10017 Histidine-specific methyltransferase, SAM-dependent Alide_2609 PF03922 OmpW family Alide_2610 PF05661 Protein of unknown function (DUF808) Alide_2611 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Alide_2611 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Alide_2611 PF02769 AIR synthase related protein, C-terminal domain Alide_2612 PF00557 Metallopeptidase family M24 Alide_2613 PF08335 GlnD PII-uridylyltransferase Alide_2613 PF01966 HD domain Alide_2613 PF01909 Nucleotidyltransferase domain Alide_2614 PF00860 Permease family Alide_2615 PF01327 Polypeptide deformylase Alide_2616 PF04304 Protein of unknown function (DUF454) Alide_2620 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_2622 PF03971 Monomeric isocitrate dehydrogenase Alide_2623 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Alide_2623 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Alide_2624 PF02601 Exonuclease VII, large subunit Alide_2624 PF13742 OB-fold nucleic acid binding domain Alide_2625 PF01618 MotA/TolQ/ExbB proton channel family Alide_2626 PF02472 Biopolymer transport protein ExbD/TolR Alide_2627 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Alide_2628 PF03966 Trm112p-like protein Alide_2629 PF02348 Cytidylyltransferase Alide_2630 PF05191 Adenylate kinase, active site lid Alide_2631 PF17763 Glutaminase/Asparaginase C-terminal domain Alide_2631 PF00710 Asparaginase, N-terminal Alide_2632 PF01726 LexA DNA binding domain Alide_2632 PF00717 Peptidase S24-like Alide_2634 PF04408 Helicase associated domain (HA2) Alide_2634 PF00271 Helicase conserved C-terminal domain Alide_2634 PF11898 Domain of unknown function (DUF3418) Alide_2634 PF00270 DEAD/DEAH box helicase Alide_2634 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Alide_2635 PF02803 Thiolase, C-terminal domain Alide_2635 PF00108 Thiolase, N-terminal domain Alide_2636 PF00501 AMP-binding enzyme Alide_2636 PF13193 AMP-binding enzyme C-terminal domain Alide_2637 PF02632 BioY family Alide_2639 PF00005 ABC transporter Alide_2642 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_2643 PF01926 50S ribosome-binding GTPase Alide_2644 PF01926 50S ribosome-binding GTPase Alide_2645 PF07690 Major Facilitator Superfamily Alide_2646 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2647 PF02426 Muconolactone delta-isomerase Alide_2648 PF12146 Serine aminopeptidase, S33 Alide_2649 PF00106 short chain dehydrogenase Alide_2650 PF04444 Catechol dioxygenase N terminus Alide_2650 PF00775 Dioxygenase Alide_2651 PF13378 Enolase C-terminal domain-like Alide_2651 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Alide_2652 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2652 PF03466 LysR substrate binding domain Alide_2653 PF01081 KDPG and KHG aldolase Alide_2654 PF00920 Dehydratase family Alide_2655 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_2656 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide_2657 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Alide_2659 PF00356 Bacterial regulatory proteins, lacI family Alide_2659 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Alide_2660 PF10431 C-terminal, D2-small domain, of ClpB protein Alide_2660 PF17871 AAA lid domain Alide_2660 PF07724 AAA domain (Cdc48 subfamily) Alide_2660 PF02861 Clp amino terminal domain, pathogenicity island component Alide_2660 PF00004 ATPase family associated with various cellular activities (AAA) Alide_2661 PF02617 ATP-dependent Clp protease adaptor protein ClpS Alide_2662 PF01336 OB-fold nucleic acid binding domain Alide_2662 PF02811 PHP domain Alide_2662 PF07733 Bacterial DNA polymerase III alpha NTPase domain Alide_2662 PF14579 Helix-hairpin-helix motif Alide_2662 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Alide_2663 PF13525 Outer membrane lipoprotein Alide_2664 PF13307 Helicase C-terminal domain Alide_2664 PF04851 Type III restriction enzyme, res subunit Alide_2667 PF03969 AFG1-like ATPase Alide_2668 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_2668 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2669 PF00364 Biotin-requiring enzyme Alide_2669 PF02817 e3 binding domain Alide_2669 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_2670 PF16870 2-oxoglutarate dehydrogenase C-terminal Alide_2670 PF02779 Transketolase, pyrimidine binding domain Alide_2670 PF16078 2-oxoglutarate dehydrogenase N-terminus Alide_2670 PF00676 Dehydrogenase E1 component Alide_2671 PF01594 AI-2E family transporter Alide_2672 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2675 PF03466 LysR substrate binding domain Alide_2675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2676 PF00582 Universal stress protein family Alide_2677 PF00005 ABC transporter Alide_2677 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_2678 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide_2678 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2679 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2681 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_2683 PF00892 EamA-like transporter family Alide_2684 PF04325 Protein of unknown function (DUF465) Alide_2685 PF01068 ATP dependent DNA ligase domain Alide_2685 PF14743 DNA ligase OB-like domain Alide_2686 PF03741 Integral membrane protein TerC family Alide_2687 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Alide_2687 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Alide_2687 PF01276 Orn/Lys/Arg decarboxylase, major domain Alide_2689 PF01145 SPFH domain / Band 7 family Alide_2690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2690 PF03466 LysR substrate binding domain Alide_2691 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide_2691 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_2691 PF00205 Thiamine pyrophosphate enzyme, central domain Alide_2692 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Alide_2693 PF02899 Phage integrase, N-terminal SAM-like domain Alide_2693 PF00589 Phage integrase family Alide_2694 PF03358 NADPH-dependent FMN reductase Alide_2695 PF00690 Cation transporter/ATPase, N-terminus Alide_2695 PF00689 Cation transporting ATPase, C-terminus Alide_2696 PF08281 Sigma-70, region 4 Alide_2696 PF04542 Sigma-70 region 2 Alide_2701 PF01545 Cation efflux family Alide_2703 PF13230 Glutamine amidotransferases class-II Alide_2704 PF00175 Oxidoreductase NAD-binding domain Alide_2704 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_2704 PF00970 Oxidoreductase FAD-binding domain Alide_2705 PF02803 Thiolase, C-terminal domain Alide_2705 PF00108 Thiolase, N-terminal domain Alide_2711 PF13276 HTH-like domain Alide_2711 PF13333 Integrase core domain Alide_2711 PF00665 Integrase core domain Alide_2712 PF01527 Transposase Alide_2714 PF01131 DNA topoisomerase Alide_2714 PF01751 Toprim domain Alide_2722 PF13614 AAA domain Alide_2725 PF03466 LysR substrate binding domain Alide_2725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2726 PF00873 AcrB/AcrD/AcrF family Alide_2727 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide_2731 PF04945 YHS domain Alide_2732 PF11339 Protein of unknown function (DUF3141) Alide_2733 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_2733 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Alide_2739 PF05275 Copper resistance protein B precursor (CopB) Alide_2740 PF00394 Multicopper oxidase Alide_2740 PF07731 Multicopper oxidase Alide_2740 PF07732 Multicopper oxidase Alide_2741 PF00486 Transcriptional regulatory protein, C terminal Alide_2741 PF00072 Response regulator receiver domain Alide_2742 PF00512 His Kinase A (phospho-acceptor) domain Alide_2742 PF00672 HAMP domain Alide_2742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2745 PF07731 Multicopper oxidase Alide_2745 PF07732 Multicopper oxidase Alide_2747 PF13333 Integrase core domain Alide_2747 PF13276 HTH-like domain Alide_2747 PF00665 Integrase core domain Alide_2750 PF00403 Heavy-metal-associated domain Alide_2751 PF02583 Metal-sensitive transcriptional repressor Alide_2752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2752 PF03466 LysR substrate binding domain Alide_2754 PF00216 Bacterial DNA-binding protein Alide_2758 PF03466 LysR substrate binding domain Alide_2758 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2759 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_2760 PF01734 Patatin-like phospholipase Alide_2761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2761 PF03466 LysR substrate binding domain Alide_2762 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2763 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Alide_2763 PF08666 SAF domain Alide_2764 PF00171 Aldehyde dehydrogenase family Alide_2765 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_2767 PF01177 Asp/Glu/Hydantoin racemase Alide_2770 PF01979 Amidohydrolase family Alide_2771 PF05962 HutD Alide_2772 PF00005 ABC transporter Alide_2773 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2776 PF17392 Urocanase C-terminal domain Alide_2776 PF17391 Urocanase N-terminal domain Alide_2776 PF01175 Urocanase Rossmann-like domain Alide_2777 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Alide_2778 PF00392 Bacterial regulatory proteins, gntR family Alide_2778 PF07702 UTRA domain Alide_2779 PF00221 Aromatic amino acid lyase Alide_2780 PF07702 UTRA domain Alide_2780 PF00392 Bacterial regulatory proteins, gntR family Alide_2781 PF00005 ABC transporter Alide_2782 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2785 PF02515 CoA-transferase family III Alide_2786 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2786 PF03466 LysR substrate binding domain Alide_2787 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2788 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2789 PF00682 HMGL-like Alide_2790 PF02515 CoA-transferase family III Alide_2791 PF03466 LysR substrate binding domain Alide_2791 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2793 PF09285 Elongation factor P, C-terminal Alide_2793 PF01132 Elongation factor P (EF-P) OB domain Alide_2793 PF08207 Elongation factor P (EF-P) KOW-like domain Alide_2795 PF00474 Sodium:solute symporter family Alide_2797 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Alide_2797 PF02896 PEP-utilising enzyme, TIM barrel domain Alide_2797 PF00391 PEP-utilising enzyme, mobile domain Alide_2798 PF03618 Kinase/pyrophosphorylase Alide_2799 PF00873 AcrB/AcrD/AcrF family Alide_2804 PF00199 Catalase Alide_2804 PF06628 Catalase-related immune-responsive Alide_2805 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2805 PF13192 Thioredoxin domain Alide_2806 PF00578 AhpC/TSA family Alide_2806 PF10417 C-terminal domain of 1-Cys peroxiredoxin Alide_2807 PF00210 Ferritin-like domain Alide_2808 PF05247 Flagellar transcriptional activator (FlhD) Alide_2809 PF05280 Flagellar transcriptional activator (FlhC) Alide_2810 PF00311 Phosphoenolpyruvate carboxylase Alide_2811 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Alide_2811 PF03900 Porphobilinogen deaminase, C-terminal domain Alide_2815 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_2820 PF00133 tRNA synthetases class I (I, L, M and V) Alide_2820 PF08264 Anticodon-binding domain of tRNA Alide_2820 PF10458 Valyl tRNA synthetase tRNA binding arm Alide_2821 PF00483 Nucleotidyl transferase Alide_2822 PF01206 Sulfurtransferase TusA Alide_2823 PF00293 NUDIX domain Alide_2823 PF09297 NADH pyrophosphatase zinc ribbon domain Alide_2823 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Alide_2824 PF00291 Pyridoxal-phosphate dependent enzyme Alide_2826 PF03743 Bacterial conjugation TrbI-like protein Alide_2827 PF03524 Conjugal transfer protein Alide_2832 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Alide_2834 PF04956 TrbC/VIRB2 family Alide_2835 PF00437 Type II/IV secretion system protein Alide_2837 PF02534 Type IV secretory system Conjugative DNA transfer Alide_2839 PF03466 LysR substrate binding domain Alide_2839 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2841 PF01515 Phosphate acetyl/butaryl transferase Alide_2842 PF00582 Universal stress protein family Alide_2843 PF00106 short chain dehydrogenase Alide_2845 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Alide_2845 PF00561 alpha/beta hydrolase fold Alide_2846 PF00440 Bacterial regulatory proteins, tetR family Alide_2848 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide_2849 PF00005 ABC transporter Alide_2852 PF02321 Outer membrane efflux protein Alide_2853 PF00465 Iron-containing alcohol dehydrogenase Alide_2855 PF10996 Beta-Casp domain Alide_2855 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Alide_2855 PF00753 Metallo-beta-lactamase superfamily Alide_2856 PF11892 Domain of unknown function (DUF3412) Alide_2856 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Alide_2856 PF03641 Possible lysine decarboxylase Alide_2859 PF00871 Acetokinase family Alide_2860 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Alide_2860 PF09363 XFP C-terminal domain Alide_2860 PF09364 XFP N-terminal domain Alide_2865 PF04542 Sigma-70 region 2 Alide_2865 PF08281 Sigma-70, region 4 Alide_2868 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_2868 PF00970 Oxidoreductase FAD-binding domain Alide_2868 PF00175 Oxidoreductase NAD-binding domain Alide_2869 PF02424 ApbE family Alide_2871 PF01292 Prokaryotic cytochrome b561 Alide_2874 PF00403 Heavy-metal-associated domain Alide_2876 PF10502 Signal peptidase, peptidase S26 Alide_2879 PF13276 HTH-like domain Alide_2879 PF00665 Integrase core domain Alide_2879 PF13333 Integrase core domain Alide_2880 PF01527 Transposase Alide_2883 PF00378 Enoyl-CoA hydratase/isomerase Alide_2885 PF13193 AMP-binding enzyme C-terminal domain Alide_2885 PF00501 AMP-binding enzyme Alide_2886 PF00682 HMGL-like Alide_2887 PF00289 Biotin carboxylase, N-terminal domain Alide_2887 PF02785 Biotin carboxylase C-terminal domain Alide_2887 PF00364 Biotin-requiring enzyme Alide_2887 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_2888 PF01039 Carboxyl transferase domain Alide_2889 PF14535 AMP-binding enzyme C-terminal domain Alide_2889 PF00501 AMP-binding enzyme Alide_2890 PF00378 Enoyl-CoA hydratase/isomerase Alide_2893 PF00216 Bacterial DNA-binding protein Alide_2894 PF01066 CDP-alcohol phosphatidyltransferase Alide_2895 PF01541 GIY-YIG catalytic domain Alide_2895 PF08459 UvrC Helix-hairpin-helix N-terminal Alide_2899 PF09339 IclR helix-turn-helix domain Alide_2900 PF00106 short chain dehydrogenase Alide_2901 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2901 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2901 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2902 PF00501 AMP-binding enzyme Alide_2902 PF13193 AMP-binding enzyme C-terminal domain Alide_2904 PF00005 ABC transporter Alide_2905 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_2905 PF00005 ABC transporter Alide_2906 PF11862 Domain of unknown function (DUF3382) Alide_2906 PF02653 Branched-chain amino acid transport system / permease component Alide_2907 PF02653 Branched-chain amino acid transport system / permease component Alide_2908 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2909 PF13609 Gram-negative porin Alide_2911 PF00378 Enoyl-CoA hydratase/isomerase Alide_2912 PF00171 Aldehyde dehydrogenase family Alide_2913 PF00171 Aldehyde dehydrogenase family Alide_2915 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2917 PF00171 Aldehyde dehydrogenase family Alide_2918 PF08240 Alcohol dehydrogenase GroES-like domain Alide_2918 PF00107 Zinc-binding dehydrogenase Alide_2919 PF13458 Periplasmic binding protein Alide_2920 PF02653 Branched-chain amino acid transport system / permease component Alide_2921 PF02653 Branched-chain amino acid transport system / permease component Alide_2921 PF11862 Domain of unknown function (DUF3382) Alide_2922 PF00005 ABC transporter Alide_2922 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_2923 PF00005 ABC transporter Alide_2925 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_2926 PF02515 CoA-transferase family III Alide_2928 PF01012 Electron transfer flavoprotein domain Alide_2928 PF00766 Electron transfer flavoprotein FAD-binding domain Alide_2929 PF01012 Electron transfer flavoprotein domain Alide_2930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2930 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2931 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2931 PF03466 LysR substrate binding domain Alide_2933 PF02515 CoA-transferase family III Alide_2935 PF16177 Acetyl-coenzyme A synthetase N-terminus Alide_2935 PF00501 AMP-binding enzyme Alide_2935 PF13193 AMP-binding enzyme C-terminal domain Alide_2936 PF02803 Thiolase, C-terminal domain Alide_2936 PF00108 Thiolase, N-terminal domain Alide_2939 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2939 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2939 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2941 PF09339 IclR helix-turn-helix domain Alide_2942 PF09339 IclR helix-turn-helix domain Alide_2945 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2946 PF05199 GMC oxidoreductase Alide_2946 PF00732 GMC oxidoreductase Alide_2947 PF00171 Aldehyde dehydrogenase family Alide_2949 PF02515 CoA-transferase family III Alide_2950 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2951 PF00378 Enoyl-CoA hydratase/isomerase Alide_2952 PF00106 short chain dehydrogenase Alide_2954 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2954 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2954 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2958 PF02803 Thiolase, C-terminal domain Alide_2958 PF00108 Thiolase, N-terminal domain Alide_2959 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2960 PF02515 CoA-transferase family III Alide_2961 PF02515 CoA-transferase family III Alide_2964 PF02515 CoA-transferase family III Alide_2966 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2967 PF03466 LysR substrate binding domain Alide_2967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2970 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alide_2971 PF00005 ABC transporter Alide_2972 PF00005 ABC transporter Alide_2972 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_2974 PF02653 Branched-chain amino acid transport system / permease component Alide_2975 PF13458 Periplasmic binding protein Alide_2976 PF00378 Enoyl-CoA hydratase/isomerase Alide_2977 PF00881 Nitroreductase family Alide_2979 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2980 PF02515 CoA-transferase family III Alide_2981 PF02515 CoA-transferase family III Alide_2982 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2982 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2982 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2983 PF01575 MaoC like domain Alide_2984 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_2985 PF00440 Bacterial regulatory proteins, tetR family Alide_2985 PF17932 Tetracyclin repressor-like, C-terminal domain Alide_2986 PF05362 Lon protease (S16) C-terminal proteolytic domain Alide_2986 PF00004 ATPase family associated with various cellular activities (AAA) Alide_2986 PF02190 ATP-dependent protease La (LON) substrate-binding domain Alide_2987 PF07724 AAA domain (Cdc48 subfamily) Alide_2987 PF06689 ClpX C4-type zinc finger Alide_2987 PF10431 C-terminal, D2-small domain, of ClpB protein Alide_2988 PF00574 Clp protease Alide_2989 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide_2989 PF05698 Bacterial trigger factor protein (TF) C-terminus Alide_2989 PF05697 Bacterial trigger factor protein (TF) Alide_2990 PF00873 AcrB/AcrD/AcrF family Alide_2991 PF13533 Biotin-lipoyl like Alide_2994 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_2994 PF02203 Tar ligand binding domain homologue Alide_2994 PF00672 HAMP domain Alide_2995 PF01593 Flavin containing amine oxidoreductase Alide_2997 PF03631 Virulence factor BrkB Alide_2999 PF02913 FAD linked oxidases, C-terminal domain Alide_2999 PF01565 FAD binding domain Alide_3000 PF00303 Thymidylate synthase Alide_3001 PF00186 Dihydrofolate reductase Alide_3003 PF00691 OmpA family Alide_3003 PF13677 Membrane MotB of proton-channel complex MotA/MotB Alide_3007 PF13340 Putative transposase of IS4/5 family (DUF4096) Alide_3008 PF00072 Response regulator receiver domain Alide_3008 PF00486 Transcriptional regulatory protein, C terminal Alide_3009 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3009 PF13492 GAF domain Alide_3009 PF02702 Osmosensitive K+ channel His kinase sensor domain Alide_3009 PF13493 Domain of unknown function (DUF4118) Alide_3009 PF00512 His Kinase A (phospho-acceptor) domain Alide_3010 PF02669 K+-transporting ATPase, c chain Alide_3012 PF03814 Potassium-transporting ATPase A subunit Alide_3014 PF03372 Endonuclease/Exonuclease/phosphatase family Alide_3015 PF02954 Bacterial regulatory protein, Fis family Alide_3015 PF00072 Response regulator receiver domain Alide_3015 PF00158 Sigma-54 interaction domain Alide_3016 PF00989 PAS fold Alide_3016 PF00512 His Kinase A (phospho-acceptor) domain Alide_3016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3024 PF00849 RNA pseudouridylate synthase Alide_3024 PF01479 S4 domain Alide_3026 PF00709 Adenylosuccinate synthetase Alide_3027 PF13393 Histidyl-tRNA synthetase Alide_3029 PF01145 SPFH domain / Band 7 family Alide_3030 PF12221 Bacterial membrane protein N terminal Alide_3030 PF01145 SPFH domain / Band 7 family Alide_3031 PF13167 GTP-binding GTPase N-terminal Alide_3031 PF16360 GTP-binding GTPase Middle Region Alide_3031 PF01926 50S ribosome-binding GTPase Alide_3032 PF17209 Hfq protein Alide_3033 PF01926 50S ribosome-binding GTPase Alide_3033 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Alide_3034 PF13360 PQQ-like domain Alide_3036 PF13393 Histidyl-tRNA synthetase Alide_3036 PF03129 Anticodon binding domain Alide_3037 PF04551 GcpE protein Alide_3040 PF04055 Radical SAM superfamily Alide_3041 PF00334 Nucleoside diphosphate kinase Alide_3042 PF00849 RNA pseudouridylate synthase Alide_3042 PF01479 S4 domain Alide_3043 PF04079 Segregation and condensation complex subunit ScpB Alide_3044 PF01479 S4 domain Alide_3044 PF00849 RNA pseudouridylate synthase Alide_3045 PF01551 Peptidase family M23 Alide_3045 PF01476 LysM domain Alide_3047 PF01975 Survival protein SurE Alide_3048 PF00072 Response regulator receiver domain Alide_3048 PF00990 Diguanylate cyclase, GGDEF domain Alide_3049 PF09423 PhoD-like phosphatase Alide_3049 PF16655 PhoD-like phosphatase, N-terminal domain Alide_3051 PF01070 FMN-dependent dehydrogenase Alide_3052 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3055 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_3057 PF01624 MutS domain I Alide_3057 PF00488 MutS domain V Alide_3057 PF05188 MutS domain II Alide_3057 PF05190 MutS family domain IV Alide_3057 PF05192 MutS domain III Alide_3058 PF02321 Outer membrane efflux protein Alide_3059 PF00873 AcrB/AcrD/AcrF family Alide_3060 PF00873 AcrB/AcrD/AcrF family Alide_3061 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide_3063 PF02673 Bacitracin resistance protein BacA Alide_3066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3066 PF06580 Histidine kinase Alide_3067 PF00072 Response regulator receiver domain Alide_3067 PF04397 LytTr DNA-binding domain Alide_3068 PF07690 Major Facilitator Superfamily Alide_3070 PF01494 FAD binding domain Alide_3071 PF00694 Aconitase C-terminal domain Alide_3071 PF00330 Aconitase family (aconitate hydratase) Alide_3072 PF00816 H-NS histone family Alide_3073 PF00149 Calcineurin-like phosphoesterase Alide_3075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_3077 PF18764 Nitrous oxide reductase propeller repeat Alide_3077 PF18793 Nitrous oxide reductase propeller repeat 2 Alide_3077 PF13473 Cupredoxin-like domain Alide_3078 PF04205 FMN-binding domain Alide_3078 PF12801 4Fe-4S binding domain Alide_3079 PF05048 Periplasmic copper-binding protein (NosD) Alide_3080 PF00005 ABC transporter Alide_3081 PF12679 ABC-2 family transporter protein Alide_3084 PF00270 DEAD/DEAH box helicase Alide_3084 PF00271 Helicase conserved C-terminal domain Alide_3085 PF04228 Putative neutral zinc metallopeptidase Alide_3086 PF00692 dUTPase Alide_3090 PF00576 HIUase/Transthyretin family Alide_3094 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_3094 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_3095 PF01261 Xylose isomerase-like TIM barrel Alide_3096 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_3096 PF00205 Thiamine pyrophosphate enzyme, central domain Alide_3096 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide_3097 PF03466 LysR substrate binding domain Alide_3097 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3098 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_3099 PF00202 Aminotransferase class-III Alide_3101 PF05161 MOFRL family Alide_3101 PF13660 Domain of unknown function (DUF4147) Alide_3102 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3103 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_3104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3104 PF03466 LysR substrate binding domain Alide_3105 PF00392 Bacterial regulatory proteins, gntR family Alide_3105 PF07729 FCD domain Alide_3107 PF07687 Peptidase dimerisation domain Alide_3107 PF01546 Peptidase family M20/M25/M40 Alide_3108 PF01546 Peptidase family M20/M25/M40 Alide_3108 PF07687 Peptidase dimerisation domain Alide_3110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3110 PF00672 HAMP domain Alide_3110 PF02203 Tar ligand binding domain homologue Alide_3111 PF00860 Permease family Alide_3112 PF01515 Phosphate acetyl/butaryl transferase Alide_3112 PF00390 Malic enzyme, N-terminal domain Alide_3112 PF03949 Malic enzyme, NAD binding domain Alide_3117 PF00578 AhpC/TSA family Alide_3118 PF02562 PhoH-like protein Alide_3118 PF13638 PIN domain Alide_3119 PF00171 Aldehyde dehydrogenase family Alide_3120 PF03796 DnaB-like helicase C terminal domain Alide_3120 PF00772 DnaB-like helicase N terminal domain Alide_3121 PF03948 Ribosomal protein L9, C-terminal domain Alide_3121 PF01281 Ribosomal protein L9, N-terminal domain Alide_3122 PF01084 Ribosomal protein S18 Alide_3124 PF01250 Ribosomal protein S6 Alide_3125 PF01025 GrpE Alide_3126 PF00012 Hsp70 protein Alide_3127 PF00684 DnaJ central domain Alide_3127 PF00226 DnaJ domain Alide_3127 PF01556 DnaJ C terminal domain Alide_3129 PF01212 Beta-eliminating lyase Alide_3134 PF02441 Flavoprotein Alide_3135 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Alide_3136 PF00067 Cytochrome P450 Alide_3137 PF10996 Beta-Casp domain Alide_3137 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Alide_3137 PF00753 Metallo-beta-lactamase superfamily Alide_3139 PF00330 Aconitase family (aconitate hydratase) Alide_3140 PF08085 Entericidin EcnA/B family Alide_3141 PF00694 Aconitase C-terminal domain Alide_3142 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_3143 PF02774 Semialdehyde dehydrogenase, dimerisation domain Alide_3143 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alide_3145 PF01416 tRNA pseudouridine synthase Alide_3146 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Alide_3147 PF00291 Pyridoxal-phosphate dependent enzyme Alide_3148 PF00290 Tryptophan synthase alpha chain Alide_3149 PF17848 Acetyl-coA carboxylase zinc finger domain Alide_3149 PF01039 Carboxyl transferase domain Alide_3150 PF02325 YGGT family Alide_3152 PF02719 Polysaccharide biosynthesis protein Alide_3154 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_3155 PF13439 Glycosyltransferase Family 4 Alide_3157 PF08003 Protein of unknown function (DUF1698) Alide_3158 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Alide_3159 PF02397 Bacterial sugar transferase Alide_3160 PF00152 tRNA synthetases class II (D, K and N) Alide_3160 PF01336 OB-fold nucleic acid binding domain Alide_3162 PF13458 Periplasmic binding protein Alide_3163 PF02653 Branched-chain amino acid transport system / permease component Alide_3164 PF02653 Branched-chain amino acid transport system / permease component Alide_3164 PF11862 Domain of unknown function (DUF3382) Alide_3165 PF00005 ABC transporter Alide_3165 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_3166 PF00005 ABC transporter Alide_3167 PF00365 Phosphofructokinase Alide_3168 PF00933 Glycosyl hydrolase family 3 N terminal domain Alide_3169 PF01648 4'-phosphopantetheinyl transferase superfamily Alide_3170 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Alide_3171 PF02565 Recombination protein O C terminal Alide_3171 PF11967 Recombination protein O N terminal Alide_3172 PF07650 KH domain Alide_3172 PF01926 50S ribosome-binding GTPase Alide_3173 PF14622 Ribonuclease-III-like Alide_3173 PF00035 Double-stranded RNA binding motif Alide_3175 PF10502 Signal peptidase, peptidase S26 Alide_3176 PF03144 Elongation factor Tu domain 2 Alide_3176 PF00009 Elongation factor Tu GTP binding domain Alide_3176 PF06421 GTP-binding protein LepA C-terminus Alide_3176 PF00679 Elongation factor G C-terminus Alide_3177 PF13180 PDZ domain Alide_3180 PF04542 Sigma-70 region 2 Alide_3180 PF08281 Sigma-70, region 4 Alide_3182 PF02801 Beta-ketoacyl synthase, C-terminal domain Alide_3182 PF00109 Beta-ketoacyl synthase, N-terminal domain Alide_3183 PF00550 Phosphopantetheine attachment site Alide_3185 PF00698 Acyl transferase domain Alide_3186 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Alide_3186 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Alide_3187 PF02504 Fatty acid synthesis protein Alide_3188 PF01783 Ribosomal L32p protein family Alide_3189 PF02620 Large ribosomal RNA subunit accumulation protein YceD Alide_3190 PF02545 Maf-like protein Alide_3191 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide_3192 PF01343 Peptidase family S49 Alide_3192 PF06965 Na+/H+ antiporter 1 Alide_3194 PF13419 Haloacid dehalogenase-like hydrolase Alide_3195 PF01479 S4 domain Alide_3195 PF00849 RNA pseudouridylate synthase Alide_3196 PF00575 S1 RNA binding domain Alide_3196 PF10150 Ribonuclease E/G family Alide_3196 PF12111 Polyribonucleotide phosphorylase C terminal Alide_3197 PF03883 Peroxide stress protein YaaA Alide_3199 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Alide_3199 PF14489 QueF-like protein Alide_3200 PF08447 PAS fold Alide_3200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3201 PF11799 impB/mucB/samB family C-terminal domain Alide_3201 PF00817 impB/mucB/samB family Alide_3202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3202 PF03466 LysR substrate binding domain Alide_3203 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3204 PF02515 CoA-transferase family III Alide_3205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3205 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3207 PF01070 FMN-dependent dehydrogenase Alide_3208 PF00691 OmpA family Alide_3209 PF13188 PAS domain Alide_3209 PF00990 Diguanylate cyclase, GGDEF domain Alide_3209 PF00563 EAL domain Alide_3209 PF03707 Bacterial signalling protein N terminal repeat Alide_3210 PF13689 YfiR/HmsC-like Alide_3211 PF00912 Transglycosylase Alide_3211 PF00905 Penicillin binding protein transpeptidase domain Alide_3211 PF14814 Bifunctional transglycosylase second domain Alide_3212 PF02142 MGS-like domain Alide_3213 PF02515 CoA-transferase family III Alide_3214 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3214 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3214 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3216 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3216 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3216 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3217 PF00710 Asparaginase, N-terminal Alide_3217 PF17763 Glutaminase/Asparaginase C-terminal domain Alide_3218 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3219 PF03466 LysR substrate binding domain Alide_3219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3220 PF00149 Calcineurin-like phosphoesterase Alide_3222 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3223 PF14698 Argininosuccinate lyase C-terminal Alide_3223 PF00206 Lyase Alide_3224 PF07694 5TMR of 5TMR-LYT Alide_3224 PF06580 Histidine kinase Alide_3225 PF03180 NLPA lipoprotein Alide_3226 PF04293 SpoVR like protein Alide_3227 PF04285 Protein of unknown function (DUF444) Alide_3228 PF08298 PrkA AAA domain Alide_3228 PF06798 PrkA serine protein kinase C-terminal domain Alide_3229 PF02082 Transcriptional regulator Alide_3230 PF04405 Domain of Unknown function (DUF542) Alide_3230 PF01814 Hemerythrin HHE cation binding domain Alide_3231 PF01152 Bacterial-like globin Alide_3234 PF00248 Aldo/keto reductase family Alide_3236 PF00155 Aminotransferase class I and II Alide_3238 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3239 PF01425 Amidase Alide_3240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3240 PF03466 LysR substrate binding domain Alide_3241 PF00730 HhH-GPD superfamily base excision DNA repair protein Alide_3241 PF10576 Iron-sulfur binding domain of endonuclease III Alide_3241 PF00633 Helix-hairpin-helix motif Alide_3243 PF02277 Phosphoribosyltransferase Alide_3244 PF07685 CobB/CobQ-like glutamine amidotransferase domain Alide_3244 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_3246 PF03186 CobD/Cbib protein Alide_3251 PF05567 Neisseria PilC beta-propeller domain Alide_3252 PF07963 Prokaryotic N-terminal methylation motif Alide_3252 PF00114 Pilin (bacterial filament) Alide_3253 PF01872 RibD C-terminal domain Alide_3253 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Alide_3254 PF13091 PLD-like domain Alide_3255 PF01207 Dihydrouridine synthase (Dus) Alide_3256 PF05175 Methyltransferase small domain Alide_3258 PF00171 Aldehyde dehydrogenase family Alide_3260 PF10431 C-terminal, D2-small domain, of ClpB protein Alide_3260 PF17871 AAA lid domain Alide_3260 PF02861 Clp amino terminal domain, pathogenicity island component Alide_3260 PF00004 ATPase family associated with various cellular activities (AAA) Alide_3260 PF07724 AAA domain (Cdc48 subfamily) Alide_3261 PF02391 MoaE protein Alide_3265 PF00701 Dihydrodipicolinate synthetase family Alide_3267 PF03454 MoeA C-terminal region (domain IV) Alide_3267 PF00994 Probable molybdopterin binding domain Alide_3267 PF03453 MoeA N-terminal region (domain I and II) Alide_3268 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Alide_3269 PF00291 Pyridoxal-phosphate dependent enzyme Alide_3269 PF14821 Threonine synthase N terminus Alide_3270 PF01850 PIN domain Alide_3272 PF01842 ACT domain Alide_3272 PF00742 Homoserine dehydrogenase Alide_3272 PF03447 Homoserine dehydrogenase, NAD binding domain Alide_3273 PF00155 Aminotransferase class I and II Alide_3274 PF04430 Protein of unknown function (DUF498/DUF598) Alide_3275 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3276 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3276 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3276 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3277 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3277 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3277 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3278 PF01012 Electron transfer flavoprotein domain Alide_3278 PF00766 Electron transfer flavoprotein FAD-binding domain Alide_3279 PF01012 Electron transfer flavoprotein domain Alide_3280 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3281 PF00108 Thiolase, N-terminal domain Alide_3281 PF02803 Thiolase, C-terminal domain Alide_3283 PF00108 Thiolase, N-terminal domain Alide_3283 PF02803 Thiolase, C-terminal domain Alide_3284 PF00378 Enoyl-CoA hydratase/isomerase Alide_3285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3285 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3286 PF00583 Acetyltransferase (GNAT) family Alide_3286 PF13380 CoA binding domain Alide_3286 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_3289 PF00378 Enoyl-CoA hydratase/isomerase Alide_3290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_3290 PF00378 Enoyl-CoA hydratase/isomerase Alide_3290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_3294 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3294 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3294 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3295 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3296 PF00378 Enoyl-CoA hydratase/isomerase Alide_3297 PF13577 SnoaL-like domain Alide_3298 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3300 PF02515 CoA-transferase family III Alide_3303 PF02515 CoA-transferase family III Alide_3304 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3305 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alide_3306 PF08241 Methyltransferase domain Alide_3307 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Alide_3307 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Alide_3308 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Alide_3309 PF00005 ABC transporter Alide_3310 PF01032 FecCD transport family Alide_3312 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Alide_3313 PF07685 CobB/CobQ-like glutamine amidotransferase domain Alide_3313 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_3314 PF07715 TonB-dependent Receptor Plug Domain Alide_3314 PF00593 TonB dependent receptor Alide_3317 PF03707 Bacterial signalling protein N terminal repeat Alide_3317 PF00990 Diguanylate cyclase, GGDEF domain Alide_3317 PF00563 EAL domain Alide_3320 PF04055 Radical SAM superfamily Alide_3320 PF06969 HemN C-terminal domain Alide_3321 PF13545 Crp-like helix-turn-helix domain Alide_3321 PF00027 Cyclic nucleotide-binding domain Alide_3324 PF13746 4Fe-4S dicluster domain Alide_3324 PF12801 4Fe-4S binding domain Alide_3324 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Alide_3325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_3325 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Alide_3328 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_3330 PF00403 Heavy-metal-associated domain Alide_3332 PF13193 AMP-binding enzyme C-terminal domain Alide_3332 PF00501 AMP-binding enzyme Alide_3333 PF00378 Enoyl-CoA hydratase/isomerase Alide_3334 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3336 PF07729 FCD domain Alide_3336 PF00392 Bacterial regulatory proteins, gntR family Alide_3337 PF01790 Prolipoprotein diacylglyceryl transferase Alide_3338 PF00210 Ferritin-like domain Alide_3340 PF00920 Dehydratase family Alide_3341 PF00920 Dehydratase family Alide_3343 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_3344 PF00005 ABC transporter Alide_3345 PF02687 FtsX-like permease family Alide_3345 PF12704 MacB-like periplasmic core domain Alide_3347 PF01368 DHH family Alide_3347 PF17768 RecJ OB domain Alide_3347 PF02272 DHHA1 domain Alide_3348 PF00672 HAMP domain Alide_3348 PF02203 Tar ligand binding domain homologue Alide_3348 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3349 PF02811 PHP domain Alide_3350 PF01300 Telomere recombination Alide_3351 PF00672 HAMP domain Alide_3351 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3351 PF02203 Tar ligand binding domain homologue Alide_3352 PF02163 Peptidase family M50 Alide_3353 PF00579 tRNA synthetases class I (W and Y) Alide_3354 PF00072 Response regulator receiver domain Alide_3354 PF00486 Transcriptional regulatory protein, C terminal Alide_3356 PF00512 His Kinase A (phospho-acceptor) domain Alide_3356 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3357 PF02397 Bacterial sugar transferase Alide_3359 PF01062 Bestrophin, RFP-TM, chloride channel Alide_3360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alide_3360 PF02403 Seryl-tRNA synthetase N-terminal domain Alide_3362 PF00571 CBS domain Alide_3362 PF03471 Transporter associated domain Alide_3362 PF01595 Cyclin M transmembrane N-terminal domain Alide_3363 PF02401 LytB protein Alide_3364 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide_3365 PF04002 RadC-like JAB domain Alide_3367 PF01713 Smr domain Alide_3367 PF00488 MutS domain V Alide_3368 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3369 PF00330 Aconitase family (aconitate hydratase) Alide_3370 PF00694 Aconitase C-terminal domain Alide_3372 PF03354 Phage Terminase Alide_3373 PF01152 Bacterial-like globin Alide_3378 PF02634 FdhD/NarQ family Alide_3382 PF13247 4Fe-4S dicluster domain Alide_3383 PF00384 Molybdopterin oxidoreductase Alide_3383 PF01568 Molydopterin dinucleotide binding domain Alide_3383 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide_3389 PF01568 Molydopterin dinucleotide binding domain Alide_3389 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide_3389 PF12838 4Fe-4S dicluster domain Alide_3389 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Alide_3389 PF00384 Molybdopterin oxidoreductase Alide_3390 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide_3390 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alide_3390 PF10531 SLBB domain Alide_3391 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_3393 PF07729 FCD domain Alide_3393 PF00392 Bacterial regulatory proteins, gntR family Alide_3394 PF02515 CoA-transferase family III Alide_3395 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3397 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3399 PF10609 NUBPL iron-transfer P-loop NTPase Alide_3400 PF03595 Voltage-dependent anion channel Alide_3401 PF02769 AIR synthase related protein, C-terminal domain Alide_3401 PF00586 AIR synthase related protein, N-terminal domain Alide_3402 PF00581 Rhodanese-like domain Alide_3405 PF01588 Putative tRNA binding domain Alide_3405 PF09334 tRNA synthetases class I (M) Alide_3407 PF00392 Bacterial regulatory proteins, gntR family Alide_3407 PF00155 Aminotransferase class I and II Alide_3408 PF03594 Benzoate membrane transport protein Alide_3409 PF01168 Alanine racemase, N-terminal domain Alide_3410 PF00117 Glutamine amidotransferase class-I Alide_3411 PF12833 Helix-turn-helix domain Alide_3411 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Alide_3412 PF00890 FAD binding domain Alide_3413 PF01070 FMN-dependent dehydrogenase Alide_3414 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_3414 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide_3417 PF02616 Segregation and condensation protein ScpA Alide_3420 PF00890 FAD binding domain Alide_3420 PF02910 Fumarate reductase flavoprotein C-term Alide_3422 PF00425 chorismate binding enzyme Alide_3422 PF04715 Anthranilate synthase component I, N terminal region Alide_3423 PF02445 Quinolinate synthetase A protein Alide_3424 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Alide_3424 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Alide_3426 PF02548 Ketopantoate hydroxymethyltransferase Alide_3427 PF02569 Pantoate-beta-alanine ligase Alide_3428 PF03466 LysR substrate binding domain Alide_3428 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3429 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3430 PF07364 Metallopeptidase family M81 Alide_3430 PF07171 MlrC C-terminus Alide_3431 PF01925 Sulfite exporter TauE/SafE Alide_3432 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3434 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Alide_3434 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Alide_3435 PF02556 Preprotein translocase subunit SecB Alide_3436 PF00462 Glutaredoxin Alide_3437 PF00581 Rhodanese-like domain Alide_3438 PF00300 Histidine phosphatase superfamily (branch 1) Alide_3439 PF03572 Peptidase family S41 Alide_3439 PF13180 PDZ domain Alide_3440 PF00899 ThiF family Alide_3442 PF00196 Bacterial regulatory proteins, luxR family Alide_3442 PF00072 Response regulator receiver domain Alide_3443 PF07730 Histidine kinase Alide_3443 PF17200 Single Cache domain 2 Alide_3444 PF07043 Protein of unknown function (DUF1328) Alide_3446 PF04972 BON domain Alide_3447 PF01467 Cytidylyltransferase-like Alide_3449 PF05193 Peptidase M16 inactive domain Alide_3450 PF05193 Peptidase M16 inactive domain Alide_3450 PF00675 Insulinase (Peptidase family M16) Alide_3451 PF02881 SRP54-type protein, helical bundle domain Alide_3451 PF00448 SRP54-type protein, GTPase domain Alide_3452 PF03466 LysR substrate binding domain Alide_3452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3453 PF00701 Dihydrodipicolinate synthetase family Alide_3454 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3456 PF13378 Enolase C-terminal domain-like Alide_3458 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3459 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3460 PF00330 Aconitase family (aconitate hydratase) Alide_3460 PF00694 Aconitase C-terminal domain Alide_3462 PF01464 Transglycosylase SLT domain Alide_3462 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_3463 PF10282 Lactonase, 7-bladed beta-propeller Alide_3464 PF00107 Zinc-binding dehydrogenase Alide_3464 PF08240 Alcohol dehydrogenase GroES-like domain Alide_3466 PF00486 Transcriptional regulatory protein, C terminal Alide_3466 PF00072 Response regulator receiver domain Alide_3467 PF00512 His Kinase A (phospho-acceptor) domain Alide_3467 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3467 PF08521 Two-component sensor kinase N-terminal Alide_3469 PF01292 Prokaryotic cytochrome b561 Alide_3471 PF00873 AcrB/AcrD/AcrF family Alide_3475 PF00140 Sigma-70 factor, region 1.2 Alide_3475 PF04542 Sigma-70 region 2 Alide_3475 PF04545 Sigma-70, region 4 Alide_3476 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3477 PF02630 SCO1/SenC Alide_3478 PF01040 UbiA prenyltransferase family Alide_3483 PF00510 Cytochrome c oxidase subunit III Alide_3485 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Alide_3487 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_3488 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Alide_3488 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Alide_3489 PF08241 Methyltransferase domain Alide_3491 PF00588 SpoU rRNA Methylase family Alide_3492 PF03466 LysR substrate binding domain Alide_3492 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3494 PF07015 VirC1 protein Alide_3495 PF01810 LysE type translocator Alide_3496 PF02254 TrkA-N domain Alide_3496 PF00999 Sodium/hydrogen exchanger family Alide_3497 PF07702 UTRA domain Alide_3497 PF00392 Bacterial regulatory proteins, gntR family Alide_3499 PF00330 Aconitase family (aconitate hydratase) Alide_3500 PF00694 Aconitase C-terminal domain Alide_3501 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3502 PF04303 PrpF protein Alide_3504 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3505 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3506 PF01546 Peptidase family M20/M25/M40 Alide_3506 PF07687 Peptidase dimerisation domain Alide_3507 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3508 PF03466 LysR substrate binding domain Alide_3508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3510 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3511 PF00106 short chain dehydrogenase Alide_3512 PF00108 Thiolase, N-terminal domain Alide_3512 PF02803 Thiolase, C-terminal domain Alide_3513 PF01144 Coenzyme A transferase Alide_3514 PF01144 Coenzyme A transferase Alide_3515 PF09339 IclR helix-turn-helix domain Alide_3515 PF01614 Bacterial transcriptional regulator Alide_3518 PF00034 Cytochrome c Alide_3519 PF07724 AAA domain (Cdc48 subfamily) Alide_3519 PF10431 C-terminal, D2-small domain, of ClpB protein Alide_3519 PF06689 ClpX C4-type zinc finger Alide_3521 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3522 PF00392 Bacterial regulatory proteins, gntR family Alide_3523 PF02515 CoA-transferase family III Alide_3524 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3524 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3524 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3525 PF00378 Enoyl-CoA hydratase/isomerase Alide_3529 PF04357 TamB, inner membrane protein subunit of TAM complex Alide_3535 PF00182 Chitinase class I Alide_3553 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Alide_3590 PF00145 C-5 cytosine-specific DNA methylase Alide_3601 PF03432 Relaxase/Mobilisation nuclease domain Alide_3603 PF02086 D12 class N6 adenine-specific DNA methyltransferase Alide_3608 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Alide_3608 PF09125 Cytochrome C oxidase subunit II, transmembrane Alide_3609 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_3610 PF01040 UbiA prenyltransferase family Alide_3614 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_3615 PF00970 Oxidoreductase FAD-binding domain Alide_3615 PF00175 Oxidoreductase NAD-binding domain Alide_3615 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_3616 PF13396 Phospholipase_D-nuclease N-terminal Alide_3616 PF13091 PLD-like domain Alide_3617 PF00512 His Kinase A (phospho-acceptor) domain Alide_3617 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3617 PF08521 Two-component sensor kinase N-terminal Alide_3618 PF00072 Response regulator receiver domain Alide_3618 PF00486 Transcriptional regulatory protein, C terminal Alide_3619 PF13180 PDZ domain Alide_3620 PF03960 ArsC family Alide_3621 PF00528 Binding-protein-dependent transport system inner membrane component Alide_3622 PF00005 ABC transporter Alide_3622 PF08402 TOBE domain Alide_3623 PF01553 Acyltransferase Alide_3624 PF01979 Amidohydrolase family Alide_3625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Alide_3625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Alide_3626 PF00156 Phosphoribosyl transferase domain Alide_3627 PF03652 Holliday junction resolvase Alide_3628 PF02622 Uncharacterized ACR, COG1678 Alide_3629 PF00072 Response regulator receiver domain Alide_3629 PF01584 CheW-like domain Alide_3629 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3629 PF01627 Hpt domain Alide_3630 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Alide_3630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3632 PF00072 Response regulator receiver domain Alide_3633 PF00072 Response regulator receiver domain Alide_3634 PF00301 Rubredoxin Alide_3636 PF00202 Aminotransferase class-III Alide_3637 PF02142 MGS-like domain Alide_3637 PF01808 AICARFT/IMPCHase bienzyme Alide_3638 PF02954 Bacterial regulatory protein, Fis family Alide_3639 PF01207 Dihydrouridine synthase (Dus) Alide_3640 PF09335 SNARE associated Golgi protein Alide_3641 PF03466 LysR substrate binding domain Alide_3641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3642 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3643 PF01546 Peptidase family M20/M25/M40 Alide_3644 PF01970 Tripartite tricarboxylate transporter TctA family Alide_3645 PF07331 Tripartite tricarboxylate transporter TctB family Alide_3646 PF00512 His Kinase A (phospho-acceptor) domain Alide_3646 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3646 PF00672 HAMP domain Alide_3647 PF00072 Response regulator receiver domain Alide_3647 PF00486 Transcriptional regulatory protein, C terminal Alide_3648 PF06071 Protein of unknown function (DUF933) Alide_3648 PF01926 50S ribosome-binding GTPase Alide_3649 PF01494 FAD binding domain Alide_3650 PF13098 Thioredoxin-like domain Alide_3650 PF10411 Disulfide bond isomerase protein N-terminus Alide_3652 PF00378 Enoyl-CoA hydratase/isomerase Alide_3654 PF04055 Radical SAM superfamily Alide_3654 PF01938 TRAM domain Alide_3654 PF00919 Uncharacterized protein family UPF0004 Alide_3655 PF02978 Signal peptide binding domain Alide_3655 PF02881 SRP54-type protein, helical bundle domain Alide_3655 PF00448 SRP54-type protein, GTPase domain Alide_3656 PF01578 Cytochrome C assembly protein Alide_3658 PF00512 His Kinase A (phospho-acceptor) domain Alide_3658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3659 PF00072 Response regulator receiver domain Alide_3659 PF02954 Bacterial regulatory protein, Fis family Alide_3659 PF00158 Sigma-54 interaction domain Alide_3660 PF01510 N-acetylmuramoyl-L-alanine amidase Alide_3661 PF03477 ATP cone domain Alide_3661 PF00317 Ribonucleotide reductase, all-alpha domain Alide_3661 PF02867 Ribonucleotide reductase, barrel domain Alide_3662 PF00268 Ribonucleotide reductase, small chain Alide_3664 PF00294 pfkB family carbohydrate kinase Alide_3667 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_3667 PF02785 Biotin carboxylase C-terminal domain Alide_3667 PF00289 Biotin carboxylase, N-terminal domain Alide_3668 PF00364 Biotin-requiring enzyme Alide_3669 PF00578 AhpC/TSA family Alide_3671 PF01225 Mur ligase family, catalytic domain Alide_3671 PF02875 Mur ligase family, glutamate ligase domain Alide_3671 PF08245 Mur ligase middle domain Alide_3673 PF00793 DAHP synthetase I family Alide_3674 PF01523 Putative modulator of DNA gyrase Alide_3675 PF01098 Cell cycle protein Alide_3676 PF05728 Uncharacterised protein family (UPF0227) Alide_3678 PF00034 Cytochrome c Alide_3680 PF08281 Sigma-70, region 4 Alide_3680 PF04542 Sigma-70 region 2 Alide_3681 PF00773 RNB domain Alide_3683 PF01488 Shikimate / quinate 5-dehydrogenase Alide_3683 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Alide_3683 PF08501 Shikimate dehydrogenase substrate binding domain Alide_3684 PF00912 Transglycosylase Alide_3686 PF13683 Integrase core domain Alide_3686 PF13276 HTH-like domain Alide_3687 PF01527 Transposase Alide_3688 PF02075 Crossover junction endodeoxyribonuclease RuvC Alide_3690 PF08241 Methyltransferase domain Alide_3691 PF13667 ThiC-associated domain Alide_3691 PF01964 Radical SAM ThiC family Alide_3693 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Alide_3696 PF00501 AMP-binding enzyme Alide_3696 PF13193 AMP-binding enzyme C-terminal domain Alide_3699 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3700 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3701 PF00091 Tubulin/FtsZ family, GTPase domain Alide_3701 PF12327 FtsZ family, C-terminal domain Alide_3702 PF02491 SHS2 domain inserted in FTSA Alide_3703 PF03799 Cell division protein FtsQ Alide_3703 PF08478 POTRA domain, FtsQ-type Alide_3704 PF07478 D-ala D-ala ligase C-terminus Alide_3704 PF01820 D-ala D-ala ligase N-terminus Alide_3705 PF08245 Mur ligase middle domain Alide_3705 PF02875 Mur ligase family, glutamate ligase domain Alide_3705 PF01225 Mur ligase family, catalytic domain Alide_3706 PF03033 Glycosyltransferase family 28 N-terminal domain Alide_3706 PF04101 Glycosyltransferase family 28 C-terminal domain Alide_3707 PF01098 Cell cycle protein Alide_3708 PF02875 Mur ligase family, glutamate ligase domain Alide_3708 PF08245 Mur ligase middle domain Alide_3709 PF00953 Glycosyl transferase family 4 Alide_3709 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Alide_3710 PF02875 Mur ligase family, glutamate ligase domain Alide_3710 PF01225 Mur ligase family, catalytic domain Alide_3710 PF08245 Mur ligase middle domain Alide_3711 PF08245 Mur ligase middle domain Alide_3711 PF02875 Mur ligase family, glutamate ligase domain Alide_3712 PF00905 Penicillin binding protein transpeptidase domain Alide_3712 PF03717 Penicillin-binding Protein dimerisation domain Alide_3714 PF01795 MraW methylase family Alide_3715 PF02381 MraZ protein, putative antitoxin-like Alide_3716 PF00004 ATPase family associated with various cellular activities (AAA) Alide_3716 PF07724 AAA domain (Cdc48 subfamily) Alide_3717 PF00227 Proteasome subunit Alide_3719 PF01258 Prokaryotic dksA/traR C4-type zinc finger Alide_3720 PF02492 CobW/HypB/UreG, nucleotide-binding domain Alide_3720 PF07683 Cobalamin synthesis protein cobW C-terminal domain Alide_3721 PF00158 Sigma-54 interaction domain Alide_3721 PF00072 Response regulator receiver domain Alide_3721 PF02954 Bacterial regulatory protein, Fis family Alide_3722 PF01339 CheB methylesterase Alide_3722 PF00072 Response regulator receiver domain Alide_3723 PF00072 Response regulator receiver domain Alide_3723 PF00486 Transcriptional regulatory protein, C terminal Alide_3725 PF01339 CheB methylesterase Alide_3725 PF00072 Response regulator receiver domain Alide_3726 PF00486 Transcriptional regulatory protein, C terminal Alide_3726 PF00072 Response regulator receiver domain Alide_3727 PF11849 Domain of unknown function (DUF3369) Alide_3729 PF00072 Response regulator receiver domain Alide_3729 PF00512 His Kinase A (phospho-acceptor) domain Alide_3729 PF01627 Hpt domain Alide_3729 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3729 PF00672 HAMP domain Alide_3729 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alide_3730 PF02203 Tar ligand binding domain homologue Alide_3730 PF00672 HAMP domain Alide_3730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3731 PF00589 Phage integrase family Alide_3731 PF02899 Phage integrase, N-terminal SAM-like domain Alide_3733 PF01678 Diaminopimelate epimerase Alide_3735 PF01479 S4 domain Alide_3735 PF00849 RNA pseudouridylate synthase Alide_3737 PF00291 Pyridoxal-phosphate dependent enzyme Alide_3741 PF03466 LysR substrate binding domain Alide_3741 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3742 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_3743 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3744 PF02515 CoA-transferase family III Alide_3745 PF04909 Amidohydrolase Alide_3746 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3747 PF12802 MarR family Alide_3749 PF00378 Enoyl-CoA hydratase/isomerase Alide_3750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3750 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3751 PF00501 AMP-binding enzyme Alide_3751 PF13193 AMP-binding enzyme C-terminal domain Alide_3752 PF00766 Electron transfer flavoprotein FAD-binding domain Alide_3752 PF01012 Electron transfer flavoprotein domain Alide_3753 PF01012 Electron transfer flavoprotein domain Alide_3754 PF03060 Nitronate monooxygenase Alide_3755 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3756 PF02515 CoA-transferase family III Alide_3758 PF00378 Enoyl-CoA hydratase/isomerase Alide_3759 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3759 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3759 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3760 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3761 PF02803 Thiolase, C-terminal domain Alide_3761 PF00108 Thiolase, N-terminal domain Alide_3762 PF00378 Enoyl-CoA hydratase/isomerase Alide_3762 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_3762 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_3763 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3763 PF03466 LysR substrate binding domain Alide_3768 PF01527 Transposase Alide_3769 PF13276 HTH-like domain Alide_3769 PF00665 Integrase core domain Alide_3769 PF13333 Integrase core domain Alide_3770 PF13276 HTH-like domain Alide_3770 PF13683 Integrase core domain Alide_3771 PF01527 Transposase Alide_3774 PF13007 Transposase C of IS166 homeodomain Alide_3774 PF13817 IS66 C-terminal element Alide_3774 PF03050 Transposase IS66 family Alide_3774 PF13005 zinc-finger binding domain of transposase IS66 Alide_3777 PF01435 Peptidase family M48 Alide_3779 PF01979 Amidohydrolase family Alide_3781 PF04343 Protein of unknown function, DUF488 Alide_3782 PF02627 Carboxymuconolactone decarboxylase family Alide_3783 PF17755 UvrA DNA-binding domain Alide_3783 PF17760 UvrA interaction domain Alide_3783 PF00005 ABC transporter Alide_3784 PF13458 Periplasmic binding protein Alide_3786 PF13609 Gram-negative porin Alide_3787 PF08946 Osmosensory transporter coiled coil Alide_3787 PF00083 Sugar (and other) transporter Alide_3789 PF00474 Sodium:solute symporter family Alide_3792 PF01323 DSBA-like thioredoxin domain Alide_3795 PF00682 HMGL-like Alide_3796 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_3797 PF00364 Biotin-requiring enzyme Alide_3797 PF00289 Biotin carboxylase, N-terminal domain Alide_3797 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_3797 PF02785 Biotin carboxylase C-terminal domain Alide_3799 PF00378 Enoyl-CoA hydratase/isomerase Alide_3800 PF01039 Carboxyl transferase domain Alide_3801 PF13193 AMP-binding enzyme C-terminal domain Alide_3801 PF00501 AMP-binding enzyme Alide_3804 PF00732 GMC oxidoreductase Alide_3804 PF05199 GMC oxidoreductase Alide_3805 PF13458 Periplasmic binding protein Alide_3806 PF02653 Branched-chain amino acid transport system / permease component Alide_3807 PF00005 ABC transporter Alide_3807 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_3808 PF00005 ABC transporter Alide_3809 PF05199 GMC oxidoreductase Alide_3809 PF00732 GMC oxidoreductase Alide_3810 PF00501 AMP-binding enzyme Alide_3810 PF13193 AMP-binding enzyme C-terminal domain Alide_3811 PF00155 Aminotransferase class I and II Alide_3812 PF00368 Hydroxymethylglutaryl-coenzyme A reductase Alide_3813 PF13419 Haloacid dehalogenase-like hydrolase Alide_3814 PF00360 Phytochrome region Alide_3814 PF00563 EAL domain Alide_3814 PF00990 Diguanylate cyclase, GGDEF domain Alide_3814 PF01590 GAF domain Alide_3815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_3817 PF00990 Diguanylate cyclase, GGDEF domain Alide_3817 PF08448 PAS fold Alide_3817 PF00563 EAL domain Alide_3822 PF03575 Peptidase family S51 Alide_3825 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3828 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3828 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3828 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3830 PF00108 Thiolase, N-terminal domain Alide_3830 PF02803 Thiolase, C-terminal domain Alide_3831 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Alide_3832 PF00484 Carbonic anhydrase Alide_3833 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3833 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3833 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3834 PF13411 MerR HTH family regulatory protein Alide_3836 PF00072 Response regulator receiver domain Alide_3836 PF01339 CheB methylesterase Alide_3837 PF03975 CheD chemotactic sensory transduction Alide_3838 PF03705 CheR methyltransferase, all-alpha domain Alide_3838 PF01739 CheR methyltransferase, SAM binding domain Alide_3839 PF01584 CheW-like domain Alide_3840 PF01584 CheW-like domain Alide_3840 PF02895 Signal transducing histidine kinase, homodimeric domain Alide_3840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3840 PF01627 Hpt domain Alide_3840 PF09078 CheY binding Alide_3841 PF00072 Response regulator receiver domain Alide_3843 PF07730 Histidine kinase Alide_3843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3843 PF05384 Sensor protein DegS Alide_3844 PF00072 Response regulator receiver domain Alide_3844 PF00196 Bacterial regulatory proteins, luxR family Alide_3845 PF01311 Bacterial export proteins, family 1 Alide_3846 PF01313 Bacterial export proteins, family 3 Alide_3847 PF00813 FliP family Alide_3849 PF16973 Flagellar motor switch protein FliN N-terminal Alide_3849 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Alide_3850 PF02154 Flagellar motor switch protein FliM Alide_3850 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Alide_3854 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide_3854 PF18269 T3SS EscN ATPase C-terminal domain Alide_3856 PF01706 FliG C-terminal domain Alide_3856 PF14842 FliG N-terminal domain Alide_3856 PF14841 FliG middle domain Alide_3857 PF08345 Flagellar M-ring protein C-terminal Alide_3857 PF01514 Secretory protein of YscJ/FliF family Alide_3861 PF07196 Flagellin hook IN motif Alide_3861 PF02465 Flagellar hook-associated protein 2 N-terminus Alide_3861 PF07195 Flagellar hook-associated protein 2 C-terminus Alide_3862 PF00700 Bacterial flagellin C-terminal helical region Alide_3862 PF00669 Bacterial flagellin N-terminal helical region Alide_3863 PF00700 Bacterial flagellin C-terminal helical region Alide_3863 PF07196 Flagellin hook IN motif Alide_3863 PF00669 Bacterial flagellin N-terminal helical region Alide_3864 PF05045 Rhamnan synthesis protein F Alide_3864 PF14307 Glycosyltransferase WbsX Alide_3865 PF03737 Aldolase/RraA Alide_3866 PF01618 MotA/TolQ/ExbB proton channel family Alide_3867 PF00691 OmpA family Alide_3867 PF13677 Membrane MotB of proton-channel complex MotA/MotB Alide_3868 PF00072 Response regulator receiver domain Alide_3869 PF04344 Chemotaxis phosphatase, CheZ Alide_3870 PF01312 FlhB HrpN YscU SpaS Family Alide_3871 PF00771 FHIPEP family Alide_3872 PF00448 SRP54-type protein, GTPase domain Alide_3874 PF04542 Sigma-70 region 2 Alide_3874 PF04545 Sigma-70, region 4 Alide_3874 PF04539 Sigma-70 region 3 Alide_3877 PF13144 Chaperone for flagella basal body P-ring formation Alide_3878 PF00460 Flagella basal body rod protein Alide_3879 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_3879 PF00460 Flagella basal body rod protein Alide_3880 PF03963 Flagellar hook capping protein - N-terminal region Alide_3880 PF13860 FlgD Ig-like domain Alide_3880 PF13861 FlgD Tudor-like domain Alide_3881 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_3881 PF00460 Flagella basal body rod protein Alide_3881 PF07559 Flagellar basal body protein FlaE Alide_3882 PF00460 Flagella basal body rod protein Alide_3882 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_3883 PF00460 Flagella basal body rod protein Alide_3883 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_3885 PF02119 Flagellar P-ring protein Alide_3886 PF10135 Rod binding protein Alide_3886 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Alide_3888 PF00669 Bacterial flagellin N-terminal helical region Alide_3890 PF03060 Nitronate monooxygenase Alide_3891 PF00155 Aminotransferase class I and II Alide_3891 PF00392 Bacterial regulatory proteins, gntR family Alide_3893 PF00892 EamA-like transporter family Alide_3894 PF00155 Aminotransferase class I and II Alide_3895 PF02567 Phenazine biosynthesis-like protein Alide_3896 PF00291 Pyridoxal-phosphate dependent enzyme Alide_3901 PF01590 GAF domain Alide_3901 PF00563 EAL domain Alide_3901 PF00990 Diguanylate cyclase, GGDEF domain Alide_3901 PF00360 Phytochrome region Alide_3905 PF02633 Creatinine amidohydrolase Alide_3906 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3908 PF00578 AhpC/TSA family Alide_3911 PF01208 Uroporphyrinogen decarboxylase (URO-D) Alide_3912 PF00270 DEAD/DEAH box helicase Alide_3912 PF00271 Helicase conserved C-terminal domain Alide_3912 PF17764 3′ DNA-binding domain (3′BD) Alide_3912 PF18074 Primosomal protein N C-terminal domain Alide_3912 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Alide_3913 PF00108 Thiolase, N-terminal domain Alide_3913 PF02803 Thiolase, C-terminal domain Alide_3914 PF00378 Enoyl-CoA hydratase/isomerase Alide_3917 PF00005 ABC transporter Alide_3921 PF00005 ABC transporter Alide_3921 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_3923 PF03547 Membrane transport protein Alide_3924 PF13361 UvrD-like helicase C-terminal domain Alide_3924 PF00580 UvrD/REP helicase N-terminal domain Alide_3926 PF02253 Phospholipase A1 Alide_3927 PF03781 Sulfatase-modifying factor enzyme 1 Alide_3928 PF00884 Sulfatase Alide_3929 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_3930 PF01494 FAD binding domain Alide_3931 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_3932 PF13609 Gram-negative porin Alide_3933 PF00392 Bacterial regulatory proteins, gntR family Alide_3933 PF07729 FCD domain Alide_3935 PF00582 Universal stress protein family Alide_3936 PF01702 Queuine tRNA-ribosyltransferase Alide_3940 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3941 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3942 PF03737 Aldolase/RraA Alide_3944 PF01553 Acyltransferase Alide_3944 PF00501 AMP-binding enzyme Alide_3945 PF01434 Peptidase family M41 Alide_3945 PF00004 ATPase family associated with various cellular activities (AAA) Alide_3945 PF17862 AAA+ lid domain Alide_3945 PF06480 FtsH Extracellular Alide_3946 PF00156 Phosphoribosyl transferase domain Alide_3947 PF00156 Phosphoribosyl transferase domain Alide_3947 PF01738 Dienelactone hydrolase family Alide_3948 PF00156 Phosphoribosyl transferase domain Alide_3948 PF01738 Dienelactone hydrolase family Alide_3949 PF08240 Alcohol dehydrogenase GroES-like domain Alide_3950 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3951 PF13454 FAD-NAD(P)-binding Alide_3956 PF13350 Tyrosine phosphatase family Alide_3957 PF01196 Ribosomal protein L17 Alide_3958 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Alide_3958 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Alide_3958 PF01000 RNA polymerase Rpb3/RpoA insert domain Alide_3959 PF00163 Ribosomal protein S4/S9 N-terminal domain Alide_3959 PF01479 S4 domain Alide_3960 PF00411 Ribosomal protein S11 Alide_3961 PF00416 Ribosomal protein S13/S18 Alide_3962 PF00444 Ribosomal protein L36 Alide_3963 PF00344 SecY translocase Alide_3964 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Alide_3965 PF00327 Ribosomal protein L30p/L7e Alide_3966 PF00333 Ribosomal protein S5, N-terminal domain Alide_3966 PF03719 Ribosomal protein S5, C-terminal domain Alide_3967 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Alide_3968 PF00347 Ribosomal protein L6 Alide_3969 PF00410 Ribosomal protein S8 Alide_3970 PF00253 Ribosomal protein S14p/S29e Alide_3971 PF00673 ribosomal L5P family C-terminus Alide_3971 PF00281 Ribosomal protein L5 Alide_3972 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Alide_3973 PF00238 Ribosomal protein L14p/L23e Alide_3974 PF01266 FAD dependent oxidoreductase Alide_3974 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Alide_3975 PF00455 DeoR C terminal sensor domain Alide_3975 PF08220 DeoR-like helix-turn-helix domain Alide_3976 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Alide_3976 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Alide_3977 PF03807 NADP oxidoreductase coenzyme F420-dependent Alide_3977 PF14748 Pyrroline-5-carboxylate reductase dimerisation Alide_3979 PF01040 UbiA prenyltransferase family Alide_3980 PF00210 Ferritin-like domain Alide_3981 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3981 PF03466 LysR substrate binding domain Alide_3982 PF00271 Helicase conserved C-terminal domain Alide_3982 PF17191 RecG wedge domain Alide_3982 PF00270 DEAD/DEAH box helicase Alide_3983 PF11871 Domain of unknown function (DUF3391) Alide_3983 PF01966 HD domain Alide_3984 PF02547 Queuosine biosynthesis protein Alide_3987 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3988 PF03466 LysR substrate binding domain Alide_3989 PF03167 Uracil DNA glycosylase superfamily Alide_3990 PF00218 Indole-3-glycerol phosphate synthase Alide_3992 PF00591 Glycosyl transferase family, a/b domain Alide_3992 PF02885 Glycosyl transferase family, helical bundle domain Alide_3993 PF00117 Glutamine amidotransferase class-I Alide_3996 PF13614 AAA domain Alide_4003 PF00436 Single-strand binding protein family Alide_4004 PF01751 Toprim domain Alide_4004 PF01131 DNA topoisomerase Alide_4005 PF01695 IstB-like ATP binding protein Alide_4006 PF00665 Integrase core domain Alide_4029 PF04002 RadC-like JAB domain Alide_4044 PF00665 Integrase core domain Alide_4045 PF01695 IstB-like ATP binding protein Alide_4051 PF04715 Anthranilate synthase component I, N terminal region Alide_4051 PF00425 chorismate binding enzyme Alide_4052 PF00672 HAMP domain Alide_4052 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_4052 PF02203 Tar ligand binding domain homologue Alide_4053 PF00990 Diguanylate cyclase, GGDEF domain Alide_4053 PF00563 EAL domain Alide_4053 PF03707 Bacterial signalling protein N terminal repeat Alide_4054 PF13419 Haloacid dehalogenase-like hydrolase Alide_4056 PF00834 Ribulose-phosphate 3 epimerase family Alide_4057 PF04379 ApaG domain Alide_4060 PF04107 Glutamate-cysteine ligase family 2(GCS2) Alide_4061 PF02769 AIR synthase related protein, C-terminal domain Alide_4061 PF00586 AIR synthase related protein, N-terminal domain Alide_4062 PF00440 Bacterial regulatory proteins, tetR family Alide_4062 PF08361 MAATS-type transcriptional repressor, C-terminal region Alide_4063 PF00561 alpha/beta hydrolase fold Alide_4063 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Alide_4064 PF02321 Outer membrane efflux protein Alide_4065 PF13533 Biotin-lipoyl like Alide_4066 PF00005 ABC transporter Alide_4068 PF01515 Phosphate acetyl/butaryl transferase Alide_4069 PF00871 Acetokinase family Alide_4070 PF04608 Phosphatidylglycerophosphatase A Alide_4071 PF02464 Competence-damaged protein Alide_4072 PF02203 Tar ligand binding domain homologue Alide_4072 PF00672 HAMP domain Alide_4072 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_4073 PF00563 EAL domain Alide_4073 PF00990 Diguanylate cyclase, GGDEF domain Alide_4073 PF03707 Bacterial signalling protein N terminal repeat Alide_4074 PF00072 Response regulator receiver domain Alide_4074 PF03861 ANTAR domain Alide_4075 PF07536 HWE histidine kinase Alide_4075 PF13426 PAS domain Alide_4076 PF03695 Uncharacterised protein family (UPF0149) Alide_4076 PF02810 SEC-C motif Alide_4078 PF01170 Putative RNA methylase family UPF0020 Alide_4078 PF02926 THUMP domain Alide_4079 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_4079 PF00672 HAMP domain Alide_4079 PF02743 Cache domain Alide_4081 PF04552 Sigma-54, DNA binding domain Alide_4081 PF04963 Sigma-54 factor, core binding domain Alide_4081 PF00309 Sigma-54 factor, Activator interacting domain (AID) Alide_4082 PF00005 ABC transporter Alide_4084 PF01323 DSBA-like thioredoxin domain Alide_4084 PF00085 Thioredoxin Alide_4086 PF00750 tRNA synthetases class I (R) Alide_4086 PF03485 Arginyl tRNA synthetase N terminal domain Alide_4086 PF05746 DALR anticodon binding domain Alide_4089 PF00375 Sodium:dicarboxylate symporter family Alide_4090 PF00512 His Kinase A (phospho-acceptor) domain Alide_4090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_4091 PF00072 Response regulator receiver domain Alide_4091 PF00196 Bacterial regulatory proteins, luxR family Alide_4092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4092 PF03466 LysR substrate binding domain Alide_4093 PF01274 Malate synthase Alide_4095 PF01361 Tautomerase enzyme Alide_4097 PF13230 Glutamine amidotransferases class-II Alide_4098 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Alide_4098 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Alide_4099 PF03594 Benzoate membrane transport protein Alide_4100 PF02705 K+ potassium transporter Alide_4102 PF02386 Cation transport protein Alide_4103 PF02080 TrkA-C domain Alide_4103 PF02254 TrkA-N domain Alide_4104 PF00171 Aldehyde dehydrogenase family Alide_4109 PF06144 DNA polymerase III, delta subunit Alide_4109 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Alide_4111 PF08264 Anticodon-binding domain of tRNA Alide_4111 PF13603 Leucyl-tRNA synthetase, Domain 2 Alide_4111 PF00133 tRNA synthetases class I (I, L, M and V) Alide_4111 PF09334 tRNA synthetases class I (M) Alide_4112 PF00924 Mechanosensitive ion channel Alide_4113 PF00171 Aldehyde dehydrogenase family Alide_4115 PF01590 GAF domain Alide_4115 PF02954 Bacterial regulatory protein, Fis family Alide_4115 PF00158 Sigma-54 interaction domain Alide_4117 PF00563 EAL domain Alide_4117 PF00990 Diguanylate cyclase, GGDEF domain Alide_4117 PF13426 PAS domain Alide_4118 PF02472 Biopolymer transport protein ExbD/TolR Alide_4119 PF01618 MotA/TolQ/ExbB proton channel family Alide_4121 PF04355 SmpA / OmlA family Alide_4122 PF01475 Ferric uptake regulator family Alide_4123 PF02603 HPr Serine kinase N terminus Alide_4123 PF07475 HPr Serine kinase C-terminal domain Alide_4124 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Alide_4125 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Alide_4126 PF01259 SAICAR synthetase Alide_4127 PF00085 Thioredoxin Alide_4128 PF00731 AIR carboxylase Alide_4129 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Alide_4129 PF02222 ATP-grasp domain Alide_4130 PF03481 Putative GTP-binding controlling metal-binding Alide_4130 PF01300 Telomere recombination Alide_4144 PF03922 OmpW family Alide_4146 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Alide_4147 PF00814 Glycoprotease family Alide_4150 PF01544 CorA-like Mg2+ transporter protein Alide_4153 PF01048 Phosphorylase superfamily Alide_4154 PF13193 AMP-binding enzyme C-terminal domain Alide_4154 PF00501 AMP-binding enzyme Alide_4155 PF02233 NAD(P) transhydrogenase beta subunit Alide_4156 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Alide_4156 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Alide_4156 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Alide_4158 PF01116 Fructose-bisphosphate aldolase class-II Alide_4159 PF00224 Pyruvate kinase, barrel domain Alide_4159 PF02887 Pyruvate kinase, alpha/beta domain Alide_4160 PF05195 Aminopeptidase P, N-terminal domain Alide_4160 PF00557 Metallopeptidase family M24 Alide_4161 PF00378 Enoyl-CoA hydratase/isomerase Alide_4162 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4163 PF02515 CoA-transferase family III Alide_4166 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4167 PF03466 LysR substrate binding domain Alide_4167 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4168 PF00483 Nucleotidyl transferase Alide_4169 PF02779 Transketolase, pyrimidine binding domain Alide_4169 PF00456 Transketolase, thiamine diphosphate binding domain Alide_4169 PF02780 Transketolase, C-terminal domain Alide_4170 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Alide_4170 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Alide_4172 PF07722 Peptidase C26 Alide_4173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4173 PF03466 LysR substrate binding domain Alide_4174 PF04909 Amidohydrolase Alide_4180 PF07715 TonB-dependent Receptor Plug Domain Alide_4180 PF00593 TonB dependent receptor Alide_4182 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4185 PF03466 LysR substrate binding domain Alide_4185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4187 PF00106 short chain dehydrogenase Alide_4193 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4194 PF13380 CoA binding domain Alide_4194 PF00583 Acetyltransferase (GNAT) family Alide_4194 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_4195 PF02798 Glutathione S-transferase, N-terminal domain Alide_4198 PF01131 DNA topoisomerase Alide_4198 PF01751 Toprim domain Alide_4200 PF08279 HTH domain Alide_4200 PF03099 Biotin/lipoate A/B protein ligase family Alide_4200 PF02237 Biotin protein ligase C terminal domain Alide_4202 PF00107 Zinc-binding dehydrogenase Alide_4202 PF08240 Alcohol dehydrogenase GroES-like domain Alide_4204 PF13452 N-terminal half of MaoC dehydratase Alide_4206 PF16177 Acetyl-coenzyme A synthetase N-terminus Alide_4206 PF00501 AMP-binding enzyme Alide_4206 PF13193 AMP-binding enzyme C-terminal domain Alide_4207 PF12802 MarR family Alide_4211 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_4212 PF08521 Two-component sensor kinase N-terminal Alide_4212 PF00512 His Kinase A (phospho-acceptor) domain Alide_4213 PF00486 Transcriptional regulatory protein, C terminal Alide_4213 PF00072 Response regulator receiver domain Alide_4214 PF00266 Aminotransferase class-V Alide_4215 PF00528 Binding-protein-dependent transport system inner membrane component Alide_4216 PF00005 ABC transporter Alide_4219 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Alide_4220 PF00171 Aldehyde dehydrogenase family Alide_4222 PF01266 FAD dependent oxidoreductase Alide_4223 PF01168 Alanine racemase, N-terminal domain Alide_4223 PF00842 Alanine racemase, C-terminal domain Alide_4224 PF01266 FAD dependent oxidoreductase Alide_4225 PF01037 Lrp/AsnC ligand binding domain Alide_4227 PF00154 recA bacterial DNA recombination protein Alide_4228 PF02631 RecX family Alide_4230 PF07549 SecD/SecF GG Motif Alide_4230 PF02355 Protein export membrane protein Alide_4231 PF02355 Protein export membrane protein Alide_4231 PF13721 SecD export protein N-terminal TM region Alide_4231 PF07549 SecD/SecF GG Motif Alide_4232 PF02699 Preprotein translocase subunit Alide_4234 PF01037 Lrp/AsnC ligand binding domain Alide_4235 PF05977 Transmembrane secretion effector Alide_4236 PF03562 MltA specific insert domain Alide_4236 PF06725 3D domain Alide_4238 PF04972 BON domain Alide_4238 PF00691 OmpA family Alide_4239 PF00196 Bacterial regulatory proteins, luxR family Alide_4239 PF00072 Response regulator receiver domain Alide_4240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_4240 PF00989 PAS fold Alide_4240 PF00512 His Kinase A (phospho-acceptor) domain Alide_4241 PF00795 Carbon-nitrogen hydrolase Alide_4243 PF03710 Glutamate-ammonia ligase adenylyltransferase Alide_4243 PF08335 GlnD PII-uridylyltransferase Alide_4244 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide_4245 PF00873 AcrB/AcrD/AcrF family Alide_4246 PF13417 Glutathione S-transferase, N-terminal domain Alide_4246 PF00043 Glutathione S-transferase, C-terminal domain Alide_4247 PF08328 Adenylosuccinate lyase C-terminal Alide_4247 PF00206 Lyase Alide_4248 PF07152 YaeQ protein Alide_4251 PF03741 Integral membrane protein TerC family Alide_4253 PF03466 LysR substrate binding domain Alide_4253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4256 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV Alide_4257 PF13181 Tetratricopeptide repeat Alide_4257 PF01435 Peptidase family M48 Alide_4258 PF01967 MoaC family Alide_4260 PF00114 Pilin (bacterial filament) Alide_4260 PF07963 Prokaryotic N-terminal methylation motif Alide_4261 PF12706 Beta-lactamase superfamily domain Alide_4261 PF00753 Metallo-beta-lactamase superfamily Alide_4262 PF16697 Inner membrane component of T3SS, cytoplasmic domain Alide_4264 PF03741 Integral membrane protein TerC family Alide_4265 PF00549 CoA-ligase Alide_4265 PF02629 CoA binding domain Alide_4266 PF08442 ATP-grasp domain Alide_4266 PF00549 CoA-ligase Alide_4267 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alide_4268 PF17782 DprA winged helix domain Alide_4268 PF02481 DNA recombination-mediator protein A Alide_4270 PF01327 Polypeptide deformylase Alide_4272 PF02911 Formyl transferase, C-terminal domain Alide_4272 PF00551 Formyl transferase Alide_4275 PF00162 Phosphoglycerate kinase Alide_4278 PF00892 EamA-like transporter family Alide_4279 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Alide_4281 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4283 PF00672 HAMP domain Alide_4283 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_4283 PF02203 Tar ligand binding domain homologue Alide_4284 PF17755 UvrA DNA-binding domain Alide_4284 PF17760 UvrA interaction domain Alide_4285 PF07690 Major Facilitator Superfamily Alide_4286 PF00436 Single-strand binding protein family Alide_4288 PF02515 CoA-transferase family III Alide_4289 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4291 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4294 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_4294 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_4294 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_4295 PF02515 CoA-transferase family III Alide_4296 PF00378 Enoyl-CoA hydratase/isomerase Alide_4297 PF02652 L-lactate permease Alide_4299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4299 PF03466 LysR substrate binding domain Alide_4300 PF04303 PrpF protein Alide_4301 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4302 PF13609 Gram-negative porin Alide_4303 PF03466 LysR substrate binding domain Alide_4303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4304 PF00890 FAD binding domain Alide_4304 PF04205 FMN-binding domain Alide_4306 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4307 PF02954 Bacterial regulatory protein, Fis family Alide_4307 PF00158 Sigma-54 interaction domain Alide_4307 PF00072 Response regulator receiver domain Alide_4308 PF01039 Carboxyl transferase domain Alide_4309 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4311 PF00289 Biotin carboxylase, N-terminal domain Alide_4311 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_4311 PF02785 Biotin carboxylase C-terminal domain Alide_4312 PF00364 Biotin-requiring enzyme Alide_4316 PF00593 TonB dependent receptor Alide_4316 PF07715 TonB-dependent Receptor Plug Domain Alide_4319 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4320 PF02515 CoA-transferase family III Alide_4322 PF13193 AMP-binding enzyme C-terminal domain Alide_4322 PF00501 AMP-binding enzyme Alide_4323 PF00677 Lumazine binding domain Alide_4324 PF01810 LysE type translocator Alide_4325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_4325 PF00672 HAMP domain Alide_4325 PF00512 His Kinase A (phospho-acceptor) domain Alide_4325 PF16527 Two-component sensor protein CpxA, periplasmic domain Alide_4326 PF00486 Transcriptional regulatory protein, C terminal Alide_4326 PF00072 Response regulator receiver domain Alide_4329 PF00175 Oxidoreductase NAD-binding domain Alide_4329 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_4329 PF00970 Oxidoreductase FAD-binding domain Alide_4330 PF01292 Prokaryotic cytochrome b561 Alide_4333 PF00970 Oxidoreductase FAD-binding domain Alide_4333 PF00175 Oxidoreductase NAD-binding domain Alide_4333 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_4334 PF02424 ApbE family Alide_4337 PF00689 Cation transporting ATPase, C-terminus Alide_4337 PF00690 Cation transporter/ATPase, N-terminus Alide_4340 PF03060 Nitronate monooxygenase Alide_4341 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4342 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_4342 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_4342 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_4343 PF01614 Bacterial transcriptional regulator Alide_4343 PF09339 IclR helix-turn-helix domain Alide_4344 PF02515 CoA-transferase family III Alide_4347 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_4347 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_4347 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_4348 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4349 PF09339 IclR helix-turn-helix domain Alide_4350 PF02515 CoA-transferase family III Alide_4351 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4351 PF03466 LysR substrate binding domain Alide_4352 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4362 PF03466 LysR substrate binding domain Alide_4362 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4363 PF00202 Aminotransferase class-III Alide_4364 PF00171 Aldehyde dehydrogenase family Alide_4365 PF00990 Diguanylate cyclase, GGDEF domain Alide_4365 PF05230 MASE2 domain Alide_4366 PF00392 Bacterial regulatory proteins, gntR family Alide_4366 PF07729 FCD domain Alide_4368 PF02653 Branched-chain amino acid transport system / permease component Alide_4369 PF11862 Domain of unknown function (DUF3382) Alide_4369 PF02653 Branched-chain amino acid transport system / permease component Alide_4370 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_4370 PF00005 ABC transporter Alide_4371 PF00005 ABC transporter Alide_4372 PF07687 Peptidase dimerisation domain Alide_4372 PF01546 Peptidase family M20/M25/M40 Alide_4373 PF07364 Metallopeptidase family M81 Alide_4373 PF07171 MlrC C-terminus Alide_4374 PF03949 Malic enzyme, NAD binding domain Alide_4374 PF00390 Malic enzyme, N-terminal domain Alide_4374 PF01515 Phosphate acetyl/butaryl transferase Alide_4375 PF00545 ribonuclease Alide_4377 PF00398 Ribosomal RNA adenine dimethylase Alide_4378 PF09312 SurA N-terminal domain Alide_4378 PF00639 PPIC-type PPIASE domain Alide_4379 PF04453 LPS transport system D Alide_4380 PF01636 Phosphotransferase enzyme family Alide_4381 PF04452 RNA methyltransferase Alide_4384 PF02463 RecF/RecN/SMC N terminal domain Alide_4384 PF06470 SMC proteins Flexible Hinge Domain Alide_4386 PF03707 Bacterial signalling protein N terminal repeat Alide_4386 PF00563 EAL domain Alide_4386 PF00990 Diguanylate cyclase, GGDEF domain Alide_4390 PF08241 Methyltransferase domain Alide_4391 PF00561 alpha/beta hydrolase fold Alide_4392 PF01169 Uncharacterized protein family UPF0016 Alide_4393 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Alide_4394 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Alide_4395 PF00106 short chain dehydrogenase Alide_4398 PF00571 CBS domain Alide_4398 PF01380 SIS domain Alide_4399 PF02080 TrkA-C domain Alide_4399 PF00999 Sodium/hydrogen exchanger family Alide_4399 PF02254 TrkA-N domain Alide_4400 PF00156 Phosphoribosyl transferase domain Alide_4403 PF10396 GTP-binding protein TrmE N-terminus Alide_4403 PF12631 MnmE helical domain Alide_4403 PF01926 50S ribosome-binding GTPase Alide_4404 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_4405 PF01266 FAD dependent oxidoreductase Alide_4406 PF03466 LysR substrate binding domain Alide_4406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4409 PF03576 Peptidase family S58 Alide_4410 PF00528 Binding-protein-dependent transport system inner membrane component Alide_4410 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide_4411 PF00528 Binding-protein-dependent transport system inner membrane component Alide_4412 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_4413 PF00005 ABC transporter Alide_4413 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_4414 PF01112 Asparaginase Alide_4418 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_4419 PF02096 60Kd inner membrane protein Alide_4419 PF14849 YidC periplasmic domain Alide_4420 PF01809 Putative membrane protein insertion efficiency factor Alide_4421 PF00825 Ribonuclease P Alide_4422 PF00468 Ribosomal protein L34 Alide_4424 PF13362 Toprim domain Alide_4424 PF18818 Metallopeptidase superfamily domain Alide_4424 PF08401 Domain of unknown function (DUF1738) Alide_4426 PF01751 Toprim domain Alide_4426 PF01131 DNA topoisomerase Alide_4427 PF10502 Signal peptidase, peptidase S26 Alide_4428 PF02534 Type IV secretory system Conjugative DNA transfer Alide_4429 PF18821 Large polyvalent protein-associated domain 7 Alide_4429 PF03432 Relaxase/Mobilisation nuclease domain Alide_4431 PF17273 Family of unknown function (DUF5338) Alide_4432 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_4433 PF11657 Transcriptional activator TraM Alide_4436 PF11740 Plasmid replication region DNA-binding N-term Alide_4437 PF08535 KorB domain Alide_4437 PF06613 KorB C-terminal beta-barrel domain Alide_4437 PF02195 ParB-like nuclease domain Alide_4438 PF13614 AAA domain Alide_4439 PF16509 TrfB plasmid transcriptional repressor Alide_4440 PF10959 Protein of unknown function (DUF2761) Alide_4441 PF17394 Uncharacterized KleE stable inheritance protein Alide_4442 PF10892 Protein of unknown function (DUF2688) Alide_4443 PF17383 Uncharacterized KorC regulated protein A Alide_4446 PF03230 Antirestriction protein Alide_4447 PF01527 Transposase Alide_4451 PF00665 Integrase core domain Alide_4452 PF01695 IstB-like ATP binding protein Alide_4456 PF00239 Resolvase, N terminal domain Alide_4456 PF02796 Helix-turn-helix domain of resolvase Alide_4460 PF01527 Transposase Alide_4462 PF00043 Glutathione S-transferase, C-terminal domain Alide_4462 PF02798 Glutathione S-transferase, N-terminal domain Alide_4463 PF00440 Bacterial regulatory proteins, tetR family Alide_4465 PF02798 Glutathione S-transferase, N-terminal domain Alide_4465 PF00043 Glutathione S-transferase, C-terminal domain Alide_4467 PF00578 AhpC/TSA family Alide_4468 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ Alide_4469 PF04221 RelB antitoxin Alide_4470 PF07042 TrfA protein Alide_4471 PF00436 Single-strand binding protein family Alide_4472 PF16509 TrfB plasmid transcriptional repressor Alide_4473 PF00437 Type II/IV secretion system protein Alide_4474 PF04956 TrbC/VIRB2 family Alide_4475 PF05101 Type IV secretory pathway, VirB3-like protein Alide_4476 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Alide_4478 PF03524 Conjugal transfer protein Alide_4480 PF03743 Bacterial conjugation TrbI-like protein Alide_4489 PF00239 Resolvase, N terminal domain Alide_4489 PF02796 Helix-turn-helix domain of resolvase Alide_4490 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ Alide_4491 PF01526 Tn3 transposase DDE domain Alide_4491 PF13700 Domain of unknown function (DUF4158) Alide_4496 PF00239 Resolvase, N terminal domain Alide_4496 PF02796 Helix-turn-helix domain of resolvase Alide_4497 PF05052 MerE protein Alide_4498 PF13411 MerR HTH family regulatory protein Alide_4499 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_4499 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_4499 PF00403 Heavy-metal-associated domain Alide_4501 PF00403 Heavy-metal-associated domain Alide_4502 PF02411 MerT mercuric transport protein Alide_4503 PF09278 MerR, DNA binding Alide_4503 PF00376 MerR family regulatory protein Alide_4514 PF02796 Helix-turn-helix domain of resolvase Alide_4514 PF00239 Resolvase, N terminal domain Alide_4516 PF13614 AAA domain Alide_4520 PF00816 H-NS histone family Alide_4527 PF01464 Transglycosylase SLT domain Alide_4533 PF03743 Bacterial conjugation TrbI-like protein Alide_4544 PF06122 Conjugative relaxosome accessory transposon protein Alide_4548 PF01695 IstB-like ATP binding protein Alide_4549 PF00665 Integrase core domain Alide_4551 PF00665 Integrase core domain Alide_4552 PF01695 IstB-like ATP binding protein Alide_4572 PF02899 Phage integrase, N-terminal SAM-like domain Alide_4572 PF00589 Phage integrase family Alide_4592 PF13007 Transposase C of IS166 homeodomain Alide_4592 PF13005 zinc-finger binding domain of transposase IS66 Alide_4592 PF13817 IS66 C-terminal element Alide_4592 PF03050 Transposase IS66 family Alide_4597 PF01343 Peptidase family S49 Alide_4601 PF01526 Tn3 transposase DDE domain Alide_4601 PF13700 Domain of unknown function (DUF4158) Alide_4606 PF06778 Chlorite dismutase Alide_4609 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Alide_4610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_4612 PF02613 Nitrate reductase delta subunit Alide_4613 PF13247 4Fe-4S dicluster domain Alide_4614 PF00384 Molybdopterin oxidoreductase Alide_4614 PF01568 Molydopterin dinucleotide binding domain Alide_4615 PF06778 Chlorite dismutase Alide_4619 PF02899 Phage integrase, N-terminal SAM-like domain Alide_4619 PF00589 Phage integrase family Alide_4620 PF01695 IstB-like ATP binding protein Alide_4621 PF00665 Integrase core domain Alide_4622 PF13700 Domain of unknown function (DUF4158) Alide_4622 PF01526 Tn3 transposase DDE domain Alide_4623 PF02899 Phage integrase, N-terminal SAM-like domain Alide_4623 PF00589 Phage integrase family Alide_4626 PF18273 Type III R-M EcoP15I C-terminal domain Alide_4626 PF01555 DNA methylase Alide_4627 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Alide_4633 PF13700 Domain of unknown function (DUF4158) Alide_4633 PF01526 Tn3 transposase DDE domain Alide_4635 PF06778 Chlorite dismutase Alide_4638 PF00239 Resolvase, N terminal domain Alide_4638 PF02796 Helix-turn-helix domain of resolvase Alide_4641 PF13700 Domain of unknown function (DUF4158) Alide_4641 PF01526 Tn3 transposase DDE domain