Alide_0001 PF00308 Bacterial dnaA protein Alide_0001 PF08299 Bacterial dnaA protein helix-turn-helix Alide_0001 PF11638 DnaA N-terminal domain Alide_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Alide_0002 PF02767 DNA polymerase III beta subunit, central domain Alide_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Alide_0003 PF00204 DNA gyrase B Alide_0003 PF00986 DNA gyrase B subunit, carboxyl terminus Alide_0003 PF01751 Toprim domain Alide_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0004 PF03692 Alide_0004 Alide_0005 PF02515 CoA-transferase family III Alide_0006 PF00378 Enoyl-CoA hydratase/isomerase family Alide_0007 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0007 PF03466 LysR substrate binding domain Alide_0008 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0009 PF07287 Alide_0009 Alide_0010 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Alide_0010 PF00364 Biotin-requiring enzyme Alide_0010 PF02785 Biotin carboxylase C-terminal domain Alide_0010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_0011 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0011 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0011 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0012 PF01039 Carboxyl transferase domain Alide_0013 PF00708 Acylphosphatase Alide_0014 PF14697 4Fe-4S dicluster domain Alide_0015 PF00742 Homoserine dehydrogenase Alide_0015 PF03447 Homoserine dehydrogenase, NAD binding domain Alide_0016 PF06733 DEAD_2 Alide_0016 PF13307 Helicase C-terminal domain Alide_0017 PF00929 Exonuclease Alide_0018 PF00877 NlpC/P60 family Alide_0019 PF00793 DAHP synthetase I family Alide_0020 PF00563 EAL domain Alide_0020 PF00989 PAS fold Alide_0020 PF00990 GGDEF domain Alide_0020 PF13185 GAF domain Alide_0020 PF13188 PAS domain Alide_0021 PF01614 Bacterial transcriptional regulator Alide_0021 PF09339 IclR helix-turn-helix domain Alide_0022 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0023 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0023 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0024 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0024 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0024 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0025 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0026 PF13380 CoA binding domain Alide_0026 PF13549 ATP-grasp domain Alide_0026 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_0027 PF00378 Enoyl-CoA hydratase/isomerase family Alide_0028 PF01614 Bacterial transcriptional regulator Alide_0028 PF09339 IclR helix-turn-helix domain Alide_0029 PF09411 Lipid A 3-O-deacylase (PagL) Alide_0030 PF07813 LTXXQ motif family protein Alide_0031 PF04381 Putative exonuclease, RdgC Alide_0032 PF07670 Nucleoside recognition Alide_0033 PF11730 Alide_0033 Alide_0034 PF02449 Beta-galactosidase Alide_0035 PF00376 MerR family regulatory protein Alide_0035 PF09278 MerR, DNA binding Alide_0036 PF00403 Heavy-metal-associated domain Alide_0037 PF00122 E1-E2 ATPase Alide_0037 PF00403 Heavy-metal-associated domain Alide_0037 PF00702 haloacid dehalogenase-like hydrolase Alide_0038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_0038 PF00672 HAMP domain Alide_0038 PF12729 Alide_0038 Alide_0039 PF00873 AcrB/AcrD/AcrF family Alide_0040 PF16576 Alide_0040 Alide_0041 PF02321 Outer membrane efflux protein Alide_0042 PF00072 Response regulator receiver domain Alide_0042 PF00486 Transcriptional regulatory protein, C terminal Alide_0043 PF00512 His Kinase A (phospho-acceptor) domain Alide_0043 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0043 PF08521 Alide_0043 Alide_0044 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alide_0045 PF00043 Glutathione S-transferase, C-terminal domain Alide_0045 PF13417 Glutathione S-transferase, N-terminal domain Alide_0047 PF03358 NADPH-dependent FMN reductase Alide_0048 PF01134 Glucose inhibited division protein A Alide_0048 PF13932 GidA associated domain 3 Alide_0050 PF02527 rRNA small subunit methyltransferase G Alide_0051 PF01810 Alide_0051 Alide_0052 PF13614 AAA domain Alide_0053 PF06821 Serine hydrolase Alide_0054 PF02195 ParB-like nuclease domain Alide_0056 PF01471 Putative peptidoglycan binding domain Alide_0057 PF02311 AraC-like ligand binding domain Alide_0057 PF12833 Helix-turn-helix domain Alide_0058 PF07690 Major Facilitator Superfamily Alide_0059 PF00924 Mechanosensitive ion channel Alide_0061 PF01565 FAD binding domain Alide_0061 PF02913 FAD linked oxidases, C-terminal domain Alide_0063 PF05069 Alide_0063 Alide_0064 PF04233 Alide_0064 Alide_0065 PF06074 Alide_0065 Alide_0075 PF02086 D12 class N6 adenine-specific DNA methyltransferase Alide_0077 PF01923 Cobalamin adenosyltransferase Alide_0078 PF03061 Thioesterase superfamily Alide_0079 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Alide_0079 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Alide_0080 PF13453 Alide_0080 Alide_0081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0081 PF03466 LysR substrate binding domain Alide_0082 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0083 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_0084 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_0085 PF02627 Carboxymuconolactone decarboxylase family Alide_0086 PF00860 Permease family Alide_0087 PF05050 Methyltransferase FkbM domain Alide_0088 PF01494 FAD binding domain Alide_0089 PF00501 AMP-binding enzyme Alide_0089 PF16177 Alide_0089 Alide_0090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0090 PF03466 LysR substrate binding domain Alide_0091 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0092 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0092 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0093 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0093 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0094 PF00378 Enoyl-CoA hydratase/isomerase family Alide_0095 PF01066 CDP-alcohol phosphatidyltransferase Alide_0096 PF00593 TonB dependent receptor Alide_0096 PF07715 TonB-dependent Receptor Plug Domain Alide_0097 PF03929 Alide_0097 Alide_0099 PF03775 Septum formation inhibitor MinC, C-terminal domain Alide_0099 PF05209 Septum formation inhibitor MinC, N-terminal domain Alide_0100 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_0101 PF03776 Septum formation topological specificity factor MinE Alide_0102 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0102 PF03466 LysR substrate binding domain Alide_0103 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0104 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Alide_0104 PF13378 Enolase C-terminal domain-like Alide_0105 PF01613 Flavin reductase like domain Alide_0106 PF12697 Alpha/beta hydrolase family Alide_0107 PF00440 Bacterial regulatory proteins, tetR family Alide_0108 PF00582 Universal stress protein family Alide_0109 PF00149 Calcineurin-like phosphoesterase Alide_0110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0110 PF03466 LysR substrate binding domain Alide_0112 PF00821 Phosphoenolpyruvate carboxykinase Alide_0112 PF17297 Alide_0112 Alide_0114 PF00291 Pyridoxal-phosphate dependent enzyme Alide_0114 PF13291 ACT domain Alide_0115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0115 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0116 PF00122 E1-E2 ATPase Alide_0116 PF00689 Cation transporting ATPase, C-terminus Alide_0116 PF00690 Cation transporter/ATPase, N-terminus Alide_0116 PF00702 haloacid dehalogenase-like hydrolase Alide_0117 PF02574 Homocysteine S-methyltransferase Alide_0118 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0118 PF03466 LysR substrate binding domain Alide_0119 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0119 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0119 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0120 PF07883 Cupin domain Alide_0121 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0122 PF00270 DEAD/DEAH box helicase Alide_0122 PF00271 Helicase conserved C-terminal domain Alide_0122 PF00570 HRDC domain Alide_0122 PF09382 RQC domain Alide_0122 PF16124 Alide_0122 Alide_0123 PF04055 Radical SAM superfamily Alide_0123 PF13353 4Fe-4S single cluster domain Alide_0124 PF13597 Anaerobic ribonucleoside-triphosphate reductase Alide_0125 PF03477 ATP cone domain Alide_0125 PF13597 Anaerobic ribonucleoside-triphosphate reductase Alide_0126 PF00563 EAL domain Alide_0126 PF00990 GGDEF domain Alide_0126 PF08448 PAS fold Alide_0126 PF13426 PAS domain Alide_0126 PF17159 Alide_0126 Alide_0127 PF01814 Hemerythrin HHE cation binding domain Alide_0128 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_0129 PF00158 Sigma-54 interaction domain Alide_0129 PF02954 Bacterial regulatory protein, Fis family Alide_0130 PF08768 Domain of unknown function (DUF1794) Alide_0131 PF03313 Alide_0131 Alide_0131 PF03315 Serine dehydratase beta chain Alide_0132 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0133 PF00501 AMP-binding enzyme Alide_0133 PF13193 AMP-binding enzyme C-terminal domain Alide_0134 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0135 PF03061 Thioesterase superfamily Alide_0136 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0137 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0138 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0138 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0138 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0139 PF00501 AMP-binding enzyme Alide_0139 PF13193 AMP-binding enzyme C-terminal domain Alide_0140 PF00108 Thiolase, N-terminal domain Alide_0140 PF02803 Thiolase, C-terminal domain Alide_0141 PF00106 short chain dehydrogenase Alide_0142 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0143 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_0145 PF01614 Bacterial transcriptional regulator Alide_0145 PF09339 IclR helix-turn-helix domain Alide_0146 PF02515 CoA-transferase family III Alide_0147 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0148 PF01796 Alide_0148 Alide_0148 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) Alide_0149 PF02803 Thiolase, C-terminal domain Alide_0150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0150 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0151 PF00501 AMP-binding enzyme Alide_0151 PF13193 AMP-binding enzyme C-terminal domain Alide_0152 PF01575 MaoC like domain Alide_0152 PF13452 N-terminal half of MaoC dehydratase Alide_0153 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_0154 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0155 PF01614 Bacterial transcriptional regulator Alide_0155 PF09339 IclR helix-turn-helix domain Alide_0156 PF07690 Major Facilitator Superfamily Alide_0157 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_0159 PF01609 Transposase DDE domain Alide_0159 PF05598 Alide_0159 Alide_0160 PF03972 MmgE/PrpD family Alide_0161 PF02515 CoA-transferase family III Alide_0162 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0162 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0162 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0163 PF13452 N-terminal half of MaoC dehydratase Alide_0164 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_0165 PF01575 MaoC like domain Alide_0165 PF13452 N-terminal half of MaoC dehydratase Alide_0166 PF00378 Enoyl-CoA hydratase/isomerase family Alide_0167 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Alide_0167 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Alide_0168 PF00108 Thiolase, N-terminal domain Alide_0168 PF02803 Thiolase, C-terminal domain Alide_0169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0169 PF03466 LysR substrate binding domain Alide_0170 PF02515 CoA-transferase family III Alide_0171 PF00107 Zinc-binding dehydrogenase Alide_0171 PF08240 Alcohol dehydrogenase GroES-like domain Alide_0172 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0173 PF03466 LysR substrate binding domain Alide_0174 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0175 PF01546 Peptidase family M20/M25/M40 Alide_0175 PF07687 Peptidase dimerisation domain Alide_0176 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0177 PF00501 AMP-binding enzyme Alide_0177 PF13193 AMP-binding enzyme C-terminal domain Alide_0178 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0179 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0180 PF01546 Peptidase family M20/M25/M40 Alide_0180 PF07687 Peptidase dimerisation domain Alide_0181 PF01796 Alide_0181 Alide_0181 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) Alide_0182 PF02803 Thiolase, C-terminal domain Alide_0183 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0183 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0183 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0184 PF03061 Thioesterase superfamily Alide_0185 PF09339 IclR helix-turn-helix domain Alide_0186 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0187 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_0188 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0188 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0188 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0189 PF01039 Carboxyl transferase domain Alide_0190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0190 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0191 PF00378 Enoyl-CoA hydratase/isomerase family Alide_0192 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Alide_0192 PF00364 Biotin-requiring enzyme Alide_0192 PF02785 Biotin carboxylase C-terminal domain Alide_0192 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_0193 PF07287 Alide_0193 Alide_0194 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0195 PF02515 CoA-transferase family III Alide_0196 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0196 PF03466 LysR substrate binding domain Alide_0197 PF02515 CoA-transferase family III Alide_0198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0198 PF03466 LysR substrate binding domain Alide_0199 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0200 PF02515 CoA-transferase family III Alide_0201 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide_0201 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Alide_0202 PF05232 Alide_0202 Alide_0204 PF00809 Pterin binding enzyme Alide_0204 PF02310 B12 binding domain Alide_0204 PF02607 B12 binding domain Alide_0204 PF02965 Vitamin B12 dependent methionine synthase, activation domain Alide_0205 PF13395 HNH endonuclease Alide_0206 PF01867 CRISPR associated protein Cas1 Alide_0207 PF09827 CRISPR associated protein Cas2 Alide_0209 PF03743 Bacterial conjugation TrbI-like protein Alide_0210 PF03524 Conjugal transfer protein Alide_0211 PF04335 VirB8 protein Alide_0212 PF04610 Alide_0212 Alide_0213 PF13605 Alide_0213 Alide_0214 PF03135 Alide_0214 Alide_0215 PF05101 Alide_0215 Alide_0216 PF04956 Alide_0216 Alide_0217 PF00437 Type II/IV secretion system protein Alide_0219 PF02534 Type IV secretory system Conjugative DNA transfer Alide_0221 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0221 PF03466 LysR substrate binding domain Alide_0222 PF00873 AcrB/AcrD/AcrF family Alide_0223 PF16576 Alide_0223 Alide_0224 PF02321 Outer membrane efflux protein Alide_0226 PF13663 Alide_0226 Alide_0227 PF00072 Response regulator receiver domain Alide_0227 PF00486 Transcriptional regulatory protein, C terminal Alide_0228 PF00512 His Kinase A (phospho-acceptor) domain Alide_0228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0230 PF12773 Alide_0230 Alide_0231 PF00122 E1-E2 ATPase Alide_0231 PF00403 Heavy-metal-associated domain Alide_0231 PF00702 haloacid dehalogenase-like hydrolase Alide_0232 PF13411 MerR HTH family regulatory protein Alide_0233 PF11843 Alide_0233 Alide_0235 PF10502 Signal peptidase, peptidase S26 Alide_0236 PF11000 Alide_0236 Alide_0238 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_0239 PF10134 Alide_0239 Alide_0240 PF12728 Helix-turn-helix domain Alide_0241 PF10074 Alide_0241 Alide_0242 PF11171 Alide_0242 Alide_0243 PF01381 Helix-turn-helix Alide_0244 PF05284 Alide_0244 Alide_0245 PF04245 Alide_0245 Alide_0246 PF04607 Region found in RelA / SpoT proteins Alide_0248 PF02195 ParB-like nuclease domain Alide_0249 PF06067 Alide_0249 Alide_0251 PF01381 Helix-turn-helix Alide_0252 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Alide_0254 PF05973 Alide_0254 Alide_0255 PF00589 Phage integrase family Alide_0255 PF13356 Domain of unknown function (DUF4102) Alide_0255 PF14659 Phage integrase, N-terminal SAM-like domain Alide_0256 PF01202 Shikimate kinase Alide_0257 PF03631 Alide_0257 Alide_0258 PF05433 Alide_0258 Alide_0259 PF00175 Oxidoreductase NAD-binding domain Alide_0259 PF00970 Oxidoreductase FAD-binding domain Alide_0260 PF13458 Periplasmic binding protein Alide_0261 PF02653 Alide_0261 Alide_0262 PF00005 ABC transporter Alide_0262 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_0263 PF00112 Papain family cysteine protease Alide_0266 PF01078 Magnesium chelatase, subunit ChlI Alide_0266 PF13335 Alide_0266 Alide_0266 PF13541 Subunit ChlI of Mg-chelatase Alide_0267 PF09694 Alide_0267 Alide_0268 PF00543 Nitrogen regulatory protein P-II Alide_0269 PF00909 Ammonium Transporter Family Alide_0270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0270 PF03466 LysR substrate binding domain Alide_0271 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_0271 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_0272 PF00171 Aldehyde dehydrogenase family Alide_0273 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0274 PF00753 Metallo-beta-lactamase superfamily Alide_0275 PF13458 Periplasmic binding protein Alide_0276 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_0276 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_0277 PF12697 Alpha/beta hydrolase family Alide_0279 PF05145 Alide_0279 Alide_0280 PF03972 MmgE/PrpD family Alide_0281 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0281 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0281 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0282 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0283 PF13380 CoA binding domain Alide_0283 PF13549 ATP-grasp domain Alide_0283 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_0284 PF01565 FAD binding domain Alide_0285 PF06912 Alide_0285 Alide_0286 PF02754 Alide_0286 Alide_0286 PF12838 4Fe-4S dicluster domain Alide_0287 PF04352 ProQ/FINO family Alide_0288 PF00892 EamA-like transporter family Alide_0289 PF07690 Major Facilitator Superfamily Alide_0290 PF00842 Alanine racemase, C-terminal domain Alide_0290 PF01168 Alanine racemase, N-terminal domain Alide_0291 PF00034 Cytochrome c Alide_0291 PF03150 Di-haem cytochrome c peroxidase Alide_0292 PF02798 Glutathione S-transferase, N-terminal domain Alide_0292 PF14497 Glutathione S-transferase, C-terminal domain Alide_0293 PF13481 AAA domain Alide_0294 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0295 PF01425 Amidase Alide_0297 PF01063 Aminotransferase class IV Alide_0298 PF10276 Zinc-finger domain Alide_0299 PF04932 Alide_0299 Alide_0300 PF00534 Glycosyl transferases group 1 Alide_0300 PF13439 Glycosyltransferase Family 4 Alide_0301 PF00535 Glycosyl transferase family 2 Alide_0302 PF05704 Alide_0302 Alide_0303 PF03060 Nitronate monooxygenase Alide_0304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0304 PF03466 LysR substrate binding domain Alide_0305 PF06779 Alide_0305 Alide_0306 PF03473 MOSC domain Alide_0306 PF03475 3-alpha domain Alide_0307 PF00578 AhpC/TSA family Alide_0308 PF08327 Activator of Hsp90 ATPase homolog 1-like protein Alide_0309 PF01575 MaoC like domain Alide_0310 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0311 PF03466 LysR substrate binding domain Alide_0312 PF02515 CoA-transferase family III Alide_0313 PF00512 His Kinase A (phospho-acceptor) domain Alide_0313 PF00672 HAMP domain Alide_0313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0314 PF00072 Response regulator receiver domain Alide_0314 PF00486 Transcriptional regulatory protein, C terminal Alide_0315 PF07690 Major Facilitator Superfamily Alide_0316 PF07883 Cupin domain Alide_0316 PF12833 Helix-turn-helix domain Alide_0317 PF00892 EamA-like transporter family Alide_0318 PF01435 Peptidase family M48 Alide_0321 PF00392 Bacterial regulatory proteins, gntR family Alide_0321 PF07729 FCD domain Alide_0322 PF00158 Sigma-54 interaction domain Alide_0322 PF02830 V4R domain Alide_0322 PF02954 Bacterial regulatory protein, Fis family Alide_0322 PF06505 Alide_0322 Alide_0323 PF06099 Alide_0323 Alide_0324 PF02332 Methane/Phenol/Toluene Hydroxylase Alide_0325 PF02406 MmoB/DmpM family Alide_0326 PF02332 Methane/Phenol/Toluene Hydroxylase Alide_0326 PF04945 YHS domain Alide_0327 PF04663 Phenol hydroxylase conserved region Alide_0328 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_0328 PF00175 Oxidoreductase NAD-binding domain Alide_0328 PF00970 Oxidoreductase FAD-binding domain Alide_0329 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_0330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_0331 PF03928 Domain of unknown function (DUF336) Alide_0334 PF13557 Alide_0334 Alide_0335 PF00171 Aldehyde dehydrogenase family Alide_0336 PF00561 alpha/beta hydrolase fold Alide_0337 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_0338 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alide_0338 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation Alide_0339 PF00682 HMGL-like Alide_0339 PF07836 DmpG-like communication domain Alide_0340 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_0341 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0342 PF01361 Tautomerase enzyme Alide_0343 PF00753 Metallo-beta-lactamase superfamily Alide_0344 PF01614 Bacterial transcriptional regulator Alide_0344 PF09339 IclR helix-turn-helix domain Alide_0345 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0346 PF04909 Amidohydrolase Alide_0347 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0348 PF03737 Demethylmenaquinone methyltransferase Alide_0349 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_0349 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_0350 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0351 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0352 PF04909 Amidohydrolase Alide_0353 PF08450 SMP-30/Gluconolaconase/LRE-like region Alide_0354 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_0355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_0356 PF00171 Aldehyde dehydrogenase family Alide_0357 PF01614 Bacterial transcriptional regulator Alide_0357 PF09339 IclR helix-turn-helix domain Alide_0359 PF00561 alpha/beta hydrolase fold Alide_0360 PF13458 Periplasmic binding protein Alide_0361 PF02653 Alide_0361 Alide_0362 PF02653 Alide_0362 Alide_0363 PF00005 ABC transporter Alide_0363 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_0364 PF00005 ABC transporter Alide_0365 PF04909 Amidohydrolase Alide_0366 PF00392 Bacterial regulatory proteins, gntR family Alide_0366 PF07729 FCD domain Alide_0367 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0367 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0367 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0368 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_0369 PF01636 Phosphotransferase enzyme family Alide_0370 PF03372 Endonuclease/Exonuclease/phosphatase family Alide_0371 PF00156 Phosphoribosyl transferase domain Alide_0373 PF02637 GatB domain Alide_0373 PF02934 GatB/GatE catalytic domain Alide_0374 PF01425 Amidase Alide_0375 PF02686 Glu-tRNAGln amidotransferase C subunit Alide_0376 PF06723 MreB/Mbl protein Alide_0377 PF04085 rod shape-determining protein MreC Alide_0378 PF04093 Alide_0378 Alide_0379 PF00905 Penicillin binding protein transpeptidase domain Alide_0379 PF03717 Penicillin-binding Protein dimerisation domain Alide_0380 PF00491 Arginase family Alide_0381 PF01925 Alide_0381 Alide_0382 PF00732 GMC oxidoreductase Alide_0382 PF05199 GMC oxidoreductase Alide_0383 PF02405 Alide_0383 Alide_0384 PF00005 ABC transporter Alide_0385 PF02470 Alide_0385 Alide_0386 PF03886 Protein of unknown function (DUF330) Alide_0388 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0388 PF03466 LysR substrate binding domain Alide_0389 PF00330 Aconitase family (aconitate hydratase) Alide_0389 PF00694 Aconitase C-terminal domain Alide_0390 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0391 PF03737 Demethylmenaquinone methyltransferase Alide_0392 PF01914 Alide_0392 Alide_0393 PF01738 Dienelactone hydrolase family Alide_0394 PF07690 Major Facilitator Superfamily Alide_0395 PF13533 Biotin-lipoyl like Alide_0395 PF16576 Alide_0395 Alide_0396 PF02321 Outer membrane efflux protein Alide_0397 PF12802 MarR family Alide_0398 PF01544 CorA-like Mg2+ transporter protein Alide_0399 PF00490 Delta-aminolevulinic acid dehydratase Alide_0401 PF03653 Alide_0401 Alide_0402 PF04892 Alide_0402 Alide_0404 PF12146 Putative lysophospholipase Alide_0405 PF00768 D-alanyl-D-alanine carboxypeptidase Alide_0405 PF07943 Penicillin-binding protein 5, C-terminal domain Alide_0406 PF00164 Ribosomal protein S12/S23 Alide_0407 PF00177 Ribosomal protein S7p/S5e Alide_0408 PF00009 Elongation factor Tu GTP binding domain Alide_0408 PF00679 Elongation factor G C-terminus Alide_0408 PF03144 Elongation factor Tu domain 2 Alide_0408 PF03764 Elongation factor G, domain IV Alide_0408 PF14492 Elongation Factor G, domain II Alide_0409 PF00009 Elongation factor Tu GTP binding domain Alide_0409 PF03143 Elongation factor Tu C-terminal domain Alide_0409 PF03144 Elongation factor Tu domain 2 Alide_0410 PF00338 Ribosomal protein S10p/S20e Alide_0411 PF00297 Ribosomal protein L3 Alide_0412 PF00573 Ribosomal protein L4/L1 family Alide_0413 PF00276 Ribosomal protein L23 Alide_0414 PF00181 Ribosomal Proteins L2, RNA binding domain Alide_0414 PF03947 Ribosomal Proteins L2, C-terminal domain Alide_0415 PF00203 Ribosomal protein S19 Alide_0416 PF00237 Ribosomal protein L22p/L17e Alide_0417 PF00189 Ribosomal protein S3, C-terminal domain Alide_0417 PF07650 KH domain Alide_0418 PF00252 Ribosomal protein L16p/L10e Alide_0419 PF00831 Ribosomal L29 protein Alide_0420 PF00366 Ribosomal protein S17 Alide_0421 PF08534 Redoxin Alide_0422 PF00583 Acetyltransferase (GNAT) family Alide_0423 PF01292 Prokaryotic cytochrome b561 Alide_0424 PF08534 Redoxin Alide_0426 PF03610 PTS system fructose IIA component Alide_0427 PF00381 PTS HPr component phosphorylation site Alide_0428 PF00391 PEP-utilising enzyme, mobile domain Alide_0428 PF02896 PEP-utilising enzyme, TIM barrel domain Alide_0428 PF05524 PEP-utilising enzyme, N-terminal Alide_0429 PF04055 Radical SAM superfamily Alide_0429 PF16881 Alide_0429 Alide_0430 PF03099 Biotin/lipoate A/B protein ligase family Alide_0431 PF04359 Protein of unknown function (DUF493) Alide_0432 PF03899 Alide_0432 Alide_0433 PF00119 ATP synthase A chain Alide_0434 PF00137 ATP synthase subunit C Alide_0435 PF00430 ATP synthase B/B' CF(0) Alide_0436 PF00213 ATP synthase delta (OSCP) subunit Alide_0437 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide_0437 PF00306 ATP synthase alpha/beta chain, C terminal domain Alide_0437 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alide_0438 PF00231 ATP synthase Alide_0439 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide_0439 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alide_0440 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Alide_0444 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0444 PF03466 LysR substrate binding domain Alide_0445 PF04536 TLP18 Alide_0446 PF04536 TLP18 Alide_0447 PF04011 LemA family Alide_0448 PF13474 SnoaL-like domain Alide_0449 PF11161 Alide_0449 Alide_0450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_0451 PF02321 Outer membrane efflux protein Alide_0452 PF00873 AcrB/AcrD/AcrF family Alide_0453 PF00529 HlyD family secretion protein Alide_0453 PF16576 Alide_0453 Alide_0454 PF00440 Bacterial regulatory proteins, tetR family Alide_0454 PF08361 MAATS-type transcriptional repressor, C-terminal region Alide_0455 PF00009 Elongation factor Tu GTP binding domain Alide_0455 PF03143 Elongation factor Tu C-terminal domain Alide_0455 PF03144 Elongation factor Tu domain 2 Alide_0456 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Alide_0457 PF00467 KOW motif Alide_0457 PF02357 Transcription termination factor nusG Alide_0458 PF00298 Ribosomal protein L11, RNA binding domain Alide_0458 PF03946 Ribosomal protein L11, N-terminal domain Alide_0459 PF00687 Ribosomal protein L1p/L10e family Alide_0460 PF00466 Ribosomal protein L10 Alide_0461 PF00542 Ribosomal protein L7/L12 C-terminal domain Alide_0461 PF16320 Alide_0461 Alide_0462 PF00562 RNA polymerase Rpb2, domain 6 Alide_0462 PF04560 RNA polymerase Rpb2, domain 7 Alide_0462 PF04561 RNA polymerase Rpb2, domain 2 Alide_0462 PF04563 RNA polymerase beta subunit Alide_0462 PF04565 RNA polymerase Rpb2, domain 3 Alide_0462 PF10385 RNA polymerase beta subunit external 1 domain Alide_0463 PF00623 RNA polymerase Rpb1, domain 2 Alide_0463 PF04983 RNA polymerase Rpb1, domain 3 Alide_0463 PF04997 RNA polymerase Rpb1, domain 1 Alide_0463 PF04998 RNA polymerase Rpb1, domain 5 Alide_0463 PF05000 RNA polymerase Rpb1, domain 4 Alide_0464 PF04011 LemA family Alide_0465 PF01029 NusB family Alide_0465 PF01189 NOL1/NOP2/sun family Alide_0466 PF14334 Alide_0466 Alide_0467 PF00512 His Kinase A (phospho-acceptor) domain Alide_0467 PF00672 HAMP domain Alide_0467 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0467 PF08448 PAS fold Alide_0468 PF00072 Response regulator receiver domain Alide_0468 PF02954 Bacterial regulatory protein, Fis family Alide_0471 PF13560 Helix-turn-helix domain Alide_0472 PF06114 Domain of unknown function (DUF955) Alide_0473 PF00665 Integrase core domain Alide_0474 PF01695 IstB-like ATP binding protein Alide_0475 PF06114 Domain of unknown function (DUF955) Alide_0478 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Alide_0481 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Alide_0481 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Alide_0481 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Alide_0482 PF01370 NAD dependent epimerase/dehydratase family Alide_0483 PF13231 Alide_0483 Alide_0484 PF00535 Glycosyl transferase family 2 Alide_0485 PF03706 Alide_0485 Alide_0486 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide_0487 PF02021 Uncharacterised protein family UPF0102 Alide_0488 PF13580 SIS domain Alide_0489 PF04972 BON domain Alide_0490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_0490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_0491 PF00437 Type II/IV secretion system protein Alide_0492 PF00027 Cyclic nucleotide-binding domain Alide_0493 PF00437 Type II/IV secretion system protein Alide_0494 PF01168 Alanine racemase, N-terminal domain Alide_0495 PF00266 Aminotransferase class-V Alide_0497 PF04286 Alide_0497 Alide_0498 PF01565 FAD binding domain Alide_0498 PF02913 FAD linked oxidases, C-terminal domain Alide_0499 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0499 PF03466 LysR substrate binding domain Alide_0500 PF00551 Formyl transferase Alide_0501 PF00563 EAL domain Alide_0501 PF00990 GGDEF domain Alide_0501 PF08447 PAS fold Alide_0501 PF08448 PAS fold Alide_0501 PF13426 PAS domain Alide_0502 PF04187 Protein of unknown function, DUF399 Alide_0503 PF02867 Ribonucleotide reductase, barrel domain Alide_0504 PF00672 HAMP domain Alide_0504 PF01590 GAF domain Alide_0504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0504 PF07730 Histidine kinase Alide_0504 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Alide_0505 PF00072 Response regulator receiver domain Alide_0505 PF00196 Bacterial regulatory proteins, luxR family Alide_0506 PF07690 Major Facilitator Superfamily Alide_0507 PF07690 Major Facilitator Superfamily Alide_0508 PF00384 Molybdopterin oxidoreductase Alide_0508 PF01568 Molydopterin dinucleotide binding domain Alide_0508 PF14710 Respiratory nitrate reductase alpha N-terminal Alide_0509 PF13247 4Fe-4S dicluster domain Alide_0509 PF14711 Respiratory nitrate reductase beta C-terminal Alide_0510 PF02613 Nitrate reductase delta subunit Alide_0511 PF02665 Nitrate reductase gamma subunit Alide_0512 PF00639 PPIC-type PPIASE domain Alide_0513 PF00484 Carbonic anhydrase Alide_0514 PF00881 Nitroreductase family Alide_0516 PF01814 Hemerythrin HHE cation binding domain Alide_0517 PF12091 Alide_0517 Alide_0518 PF11306 Protein of unknown function (DUF3108) Alide_0519 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_0520 PF13414 TPR repeat Alide_0520 PF13432 Tetratricopeptide repeat Alide_0520 PF13844 Glycosyl transferase family 41 Alide_0521 PF00384 Molybdopterin oxidoreductase Alide_0521 PF01568 Molydopterin dinucleotide binding domain Alide_0521 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide_0522 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0523 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_0524 PF02515 CoA-transferase family III Alide_0525 PF01575 MaoC like domain Alide_0526 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0526 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0526 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0527 PF01575 MaoC like domain Alide_0528 PF03972 MmgE/PrpD family Alide_0529 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_0530 PF01614 Bacterial transcriptional regulator Alide_0530 PF09339 IclR helix-turn-helix domain Alide_0531 PF01546 Peptidase family M20/M25/M40 Alide_0531 PF07687 Peptidase dimerisation domain Alide_0532 PF00887 Acyl CoA binding protein Alide_0533 PF10023 Alide_0533 Alide_0534 PF03352 Methyladenine glycosylase Alide_0536 PF02353 Mycolic acid cyclopropane synthetase Alide_0537 PF08895 Alide_0537 Alide_0538 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0539 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0540 PF00501 AMP-binding enzyme Alide_0541 PF00005 ABC transporter Alide_0542 PF13458 Periplasmic binding protein Alide_0543 PF02653 Alide_0543 Alide_0544 PF02653 Alide_0544 Alide_0545 PF00005 ABC transporter Alide_0545 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_0546 PF00501 AMP-binding enzyme Alide_0547 PF13401 AAA domain Alide_0548 PF16537 Alide_0548 Alide_0549 PF00027 Cyclic nucleotide-binding domain Alide_0549 PF13545 Crp-like helix-turn-helix domain Alide_0550 PF00849 RNA pseudouridylate synthase Alide_0550 PF01479 S4 domain Alide_0551 PF00183 Hsp90 protein Alide_0551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0553 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0554 PF01636 Phosphotransferase enzyme family Alide_0555 PF00069 Protein kinase domain Alide_0555 PF00582 Universal stress protein family Alide_0556 PF12850 Calcineurin-like phosphoesterase superfamily domain Alide_0557 PF02515 CoA-transferase family III Alide_0558 PF01575 MaoC like domain Alide_0559 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_0560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_0561 PF00732 GMC oxidoreductase Alide_0561 PF05199 GMC oxidoreductase Alide_0564 PF01061 Alide_0564 Alide_0565 PF00005 ABC transporter Alide_0566 PF07519 Tannase and feruloyl esterase Alide_0567 PF01048 Phosphorylase superfamily Alide_0567 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Alide_0568 PF00563 EAL domain Alide_0568 PF00990 GGDEF domain Alide_0568 PF08448 PAS fold Alide_0568 PF13426 PAS domain Alide_0569 PF01545 Cation efflux family Alide_0569 PF16916 Alide_0569 Alide_0570 PF02580 D-Tyr-tRNA(Tyr) deacylase Alide_0571 PF01925 Alide_0571 Alide_0572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0572 PF03466 LysR substrate binding domain Alide_0573 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0574 PF02515 CoA-transferase family III Alide_0575 PF00107 Zinc-binding dehydrogenase Alide_0576 PF00501 AMP-binding enzyme Alide_0576 PF13193 AMP-binding enzyme C-terminal domain Alide_0577 PF02130 Uncharacterized protein family UPF0054 Alide_0578 PF02562 PhoH-like protein Alide_0579 PF01330 RuvA N terminal domain Alide_0579 PF07499 RuvA, C-terminal domain Alide_0579 PF14520 Helix-hairpin-helix domain Alide_0581 PF00012 Hsp70 protein Alide_0581 PF12531 Alide_0581 Alide_0582 PF00012 Hsp70 protein Alide_0583 PF10816 Alide_0583 Alide_0584 PF05491 Holliday junction DNA helicase ruvB C-terminus Alide_0584 PF05496 Holliday junction DNA helicase ruvB N-terminus Alide_0585 PF02308 Alide_0585 Alide_0588 PF01168 Alanine racemase, N-terminal domain Alide_0588 PF14031 Putative serine dehydratase domain Alide_0589 PF00300 Histidine phosphatase superfamily (branch 1) Alide_0590 PF13590 Domain of unknown function (DUF4136) Alide_0591 PF01171 PP-loop family Alide_0592 PF02152 Dihydroneopterin aldolase Alide_0593 PF02152 Dihydroneopterin aldolase Alide_0594 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_0595 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase Alide_0596 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_0597 PF11146 Alide_0597 Alide_0598 PF00480 ROK family Alide_0599 PF00982 Glycosyltransferase family 20 Alide_0601 PF02358 Trehalose-phosphatase Alide_0602 PF00085 Thioredoxin Alide_0603 PF01743 Poly A polymerase head domain Alide_0603 PF01966 HD domain Alide_0603 PF12627 Probable RNA and SrmB- binding site of polymerase A Alide_0604 PF00158 Sigma-54 interaction domain Alide_0604 PF02954 Bacterial regulatory protein, Fis family Alide_0605 PF07287 Alide_0605 Alide_0606 PF14330 Alide_0606 Alide_0607 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0608 PF00149 Calcineurin-like phosphoesterase Alide_0609 PF13410 Glutathione S-transferase, C-terminal domain Alide_0609 PF13417 Glutathione S-transferase, N-terminal domain Alide_0610 PF01812 5-formyltetrahydrofolate cyclo-ligase family Alide_0611 PF01464 Transglycosylase SLT domain Alide_0612 PF01292 Prokaryotic cytochrome b561 Alide_0613 PF13670 Alide_0613 Alide_0614 PF13640 2OG-Fe(II) oxygenase superfamily Alide_0615 PF01070 FMN-dependent dehydrogenase Alide_0616 PF00593 TonB dependent receptor Alide_0616 PF07715 TonB-dependent Receptor Plug Domain Alide_0617 PF00753 Metallo-beta-lactamase superfamily Alide_0618 PF00501 AMP-binding enzyme Alide_0618 PF13193 AMP-binding enzyme C-terminal domain Alide_0619 PF12697 Alpha/beta hydrolase family Alide_0620 PF00109 Beta-ketoacyl synthase, N-terminal domain Alide_0620 PF02801 Beta-ketoacyl synthase, C-terminal domain Alide_0621 PF07977 FabA-like domain Alide_0622 PF00795 Carbon-nitrogen hydrolase Alide_0623 PF00571 CBS domain Alide_0623 PF03471 Transporter associated domain Alide_0624 PF00583 Acetyltransferase (GNAT) family Alide_0625 PF01037 AsnC family Alide_0625 PF13404 AsnC-type helix-turn-helix domain Alide_0626 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_0626 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Alide_0627 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Alide_0628 PF00676 Dehydrogenase E1 component Alide_0628 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal Alide_0629 PF02779 Transketolase, pyrimidine binding domain Alide_0629 PF02780 Transketolase, C-terminal domain Alide_0630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_0630 PF00364 Biotin-requiring enzyme Alide_0630 PF02817 e3 binding domain Alide_0631 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_0631 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_0632 PF02091 Glycyl-tRNA synthetase alpha subunit Alide_0633 PF02092 Alide_0633 Alide_0633 PF05746 DALR anticodon binding domain Alide_0634 PF08645 Polynucleotide kinase 3 phosphatase Alide_0635 PF01553 Acyltransferase Alide_0636 PF01863 Protein of unknown function DUF45 Alide_0637 PF00581 Rhodanese-like domain Alide_0638 PF01476 LysM domain Alide_0638 PF04972 BON domain Alide_0639 PF03309 Type III pantothenate kinase Alide_0640 PF00440 Bacterial regulatory proteins, tetR family Alide_0640 PF13972 Bacterial transcriptional repressor Alide_0641 PF05597 Alide_0641 Alide_0642 PF16363 Alide_0642 Alide_0643 PF04321 RmlD substrate binding domain Alide_0644 PF00483 Nucleotidyl transferase Alide_0645 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Alide_0646 PF00534 Glycosyl transferases group 1 Alide_0646 PF09314 Alide_0646 Alide_0647 PF00535 Glycosyl transferase family 2 Alide_0648 PF00437 Type II/IV secretion system protein Alide_0648 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alide_0649 PF00482 Type II secretion system (T2SS), protein F Alide_0650 PF07963 Prokaryotic N-terminal methylation motif Alide_0650 PF08334 Type II secretion system (T2SS), protein G Alide_0651 PF07963 Prokaryotic N-terminal methylation motif Alide_0652 PF07963 Prokaryotic N-terminal methylation motif Alide_0653 PF07963 Prokaryotic N-terminal methylation motif Alide_0654 PF03934 Type II secretion system (T2SS), protein K Alide_0655 PF05137 Alide_0655 Alide_0656 PF10741 Alide_0656 Alide_0658 PF00263 Alide_0658 Alide_0658 PF03958 Bacterial type II/III secretion system short domain Alide_0662 PF13145 PPIC-type PPIASE domain Alide_0663 PF08241 Methyltransferase domain Alide_0664 PF00535 Glycosyl transferase family 2 Alide_0665 PF13692 Glycosyl transferases group 1 Alide_0666 PF01061 Alide_0666 Alide_0667 PF00005 ABC transporter Alide_0667 PF14524 Wzt C-terminal domain Alide_0669 PF13489 Methyltransferase domain Alide_0670 PF01464 Transglycosylase SLT domain Alide_0670 PF13511 Alide_0670 Alide_0671 PF00953 Glycosyl transferase family 4 Alide_0672 PF00696 Amino acid kinase family Alide_0673 PF00440 Bacterial regulatory proteins, tetR family Alide_0674 PF00440 Bacterial regulatory proteins, tetR family Alide_0675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_0675 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_0675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_0675 PF12418 Alide_0675 Alide_0675 PF12806 Alide_0675 Alide_0676 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) Alide_0677 PF00378 Enoyl-CoA hydratase/isomerase family Alide_0677 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_0677 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_0678 PF00108 Thiolase, N-terminal domain Alide_0678 PF02803 Thiolase, C-terminal domain Alide_0679 PF13622 Thioesterase-like superfamily Alide_0680 PF00378 Enoyl-CoA hydratase/isomerase family Alide_0681 PF04519 Alide_0681 Alide_0682 PF03061 Thioesterase superfamily Alide_0683 PF00005 ABC transporter Alide_0683 PF00664 ABC transporter transmembrane region Alide_0684 PF00501 AMP-binding enzyme Alide_0684 PF13193 AMP-binding enzyme C-terminal domain Alide_0685 PF01575 MaoC like domain Alide_0686 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0687 PF03060 Nitronate monooxygenase Alide_0688 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0688 PF03466 LysR substrate binding domain Alide_0689 PF12643 Alide_0689 Alide_0690 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_0691 PF06808 Alide_0691 Alide_0692 PF04290 Alide_0692 Alide_0693 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0693 PF03466 LysR substrate binding domain Alide_0694 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_0695 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0696 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0697 PF00005 ABC transporter Alide_0698 PF02423 Ornithine cyclodeaminase/mu-crystallin family Alide_0699 PF08282 haloacid dehalogenase-like hydrolase Alide_0700 PF00009 Elongation factor Tu GTP binding domain Alide_0700 PF03144 Elongation factor Tu domain 2 Alide_0700 PF16658 Alide_0700 Alide_0701 PF00106 short chain dehydrogenase Alide_0702 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Alide_0702 PF05221 S-adenosyl-L-homocysteine hydrolase Alide_0703 PF01728 FtsJ-like methyltransferase Alide_0704 PF02219 Methylenetetrahydrofolate reductase Alide_0705 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Alide_0706 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ Alide_0707 PF00069 Protein kinase domain Alide_0708 PF00572 Ribosomal protein L13 Alide_0709 PF00380 Ribosomal protein S9/S16 Alide_0710 PF01521 Iron-sulphur cluster biosynthesis Alide_0712 PF03702 Uncharacterised protein family (UPF0075) Alide_0713 PF01551 Peptidase family M23 Alide_0714 PF00579 tRNA synthetases class I (W and Y) Alide_0714 PF01479 S4 domain Alide_0715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0715 PF03466 LysR substrate binding domain Alide_0716 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_0716 PF12804 MobA-like NTP transferase domain Alide_0717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0718 PF13591 MerR HTH family regulatory protein Alide_0719 PF00226 DnaJ domain Alide_0719 PF01556 DnaJ C terminal domain Alide_0720 PF01037 AsnC family Alide_0720 PF13404 AsnC-type helix-turn-helix domain Alide_0721 PF01380 SIS domain Alide_0721 PF13522 Glutamine amidotransferase domain Alide_0722 PF13910 Alide_0722 Alide_0725 PF00665 Integrase core domain Alide_0725 PF13276 Alide_0725 Alide_0726 PF01527 Transposase Alide_0729 PF00174 Oxidoreductase molybdopterin binding domain Alide_0730 PF01292 Prokaryotic cytochrome b561 Alide_0731 PF00072 Response regulator receiver domain Alide_0731 PF00486 Transcriptional regulatory protein, C terminal Alide_0732 PF00512 His Kinase A (phospho-acceptor) domain Alide_0732 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0734 PF00092 von Willebrand factor type A domain Alide_0734 PF07589 Alide_0734 Alide_0735 PF00483 Nucleotidyl transferase Alide_0735 PF01050 Mannose-6-phosphate isomerase Alide_0736 PF02563 Polysaccharide biosynthesis/export protein Alide_0736 PF10531 SLBB domain Alide_0737 PF13807 Alide_0737 Alide_0738 PF13614 AAA domain Alide_0740 PF13401 AAA domain Alide_0741 PF01522 Polysaccharide deacetylase Alide_0741 PF11959 Alide_0741 Alide_0742 PF13480 Acetyltransferase (GNAT) domain Alide_0743 PF13692 Glycosyl transferases group 1 Alide_0744 PF09721 Alide_0744 Alide_0744 PF11984 Alide_0744 Alide_0745 PF00733 Asparagine synthase Alide_0745 PF13537 Glutamine amidotransferase domain Alide_0746 PF00534 Glycosyl transferases group 1 Alide_0746 PF13439 Glycosyltransferase Family 4 Alide_0747 PF00534 Glycosyl transferases group 1 Alide_0747 PF13579 Glycosyl transferase 4-like domain Alide_0748 PF02350 UDP-N-acetylglucosamine 2-epimerase Alide_0749 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Alide_0749 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Alide_0749 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Alide_0750 PF00534 Glycosyl transferases group 1 Alide_0750 PF13439 Glycosyltransferase Family 4 Alide_0752 PF04932 Alide_0752 Alide_0753 PF01522 Polysaccharide deacetylase Alide_0754 PF01522 Polysaccharide deacetylase Alide_0755 PF13480 Acetyltransferase (GNAT) domain Alide_0756 PF00535 Glycosyl transferase family 2 Alide_0757 PF13440 Alide_0757 Alide_0758 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Alide_0758 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Alide_0758 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Alide_0759 PF16363 Alide_0759 Alide_0760 PF00884 Sulfatase Alide_0762 PF13480 Acetyltransferase (GNAT) domain Alide_0763 PF07589 Alide_0763 Alide_0763 PF13448 Alide_0763 Alide_0764 PF12697 Alpha/beta hydrolase family Alide_0765 PF12146 Putative lysophospholipase Alide_0766 PF00550 Phosphopantetheine attachment site Alide_0767 PF00501 AMP-binding enzyme Alide_0767 PF13193 AMP-binding enzyme C-terminal domain Alide_0768 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Alide_0768 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Alide_0769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0770 PF00072 Response regulator receiver domain Alide_0770 PF00158 Sigma-54 interaction domain Alide_0770 PF02954 Bacterial regulatory protein, Fis family Alide_0771 PF13429 Tetratricopeptide repeat Alide_0771 PF13432 Tetratricopeptide repeat Alide_0771 PF14559 Tetratricopeptide repeat Alide_0772 PF13365 Trypsin-like peptidase domain Alide_0773 PF01176 Translation initiation factor 1A / IF-1 Alide_0774 PF13532 2OG-Fe(II) oxygenase superfamily Alide_0775 PF00501 AMP-binding enzyme Alide_0775 PF13193 AMP-binding enzyme C-terminal domain Alide_0776 PF00175 Oxidoreductase NAD-binding domain Alide_0776 PF00970 Oxidoreductase FAD-binding domain Alide_0778 PF13539 D-alanyl-D-alanine carboxypeptidase Alide_0779 PF01323 DSBA-like thioredoxin domain Alide_0780 PF05981 Alide_0780 Alide_0781 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_0781 PF02875 Mur ligase family, glutamate ligase domain Alide_0781 PF08245 Mur ligase middle domain Alide_0782 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_0783 PF00005 ABC transporter Alide_0783 PF00664 ABC transporter transmembrane region Alide_0784 PF08909 Alide_0784 Alide_0786 PF00009 Elongation factor Tu GTP binding domain Alide_0786 PF00679 Elongation factor G C-terminus Alide_0786 PF03764 Elongation factor G, domain IV Alide_0786 PF14492 Elongation Factor G, domain II Alide_0787 PF06189 Alide_0787 Alide_0788 PF00482 Type II secretion system (T2SS), protein F Alide_0789 PF00296 Luciferase-like monooxygenase Alide_0790 PF13682 Chemoreceptor zinc-binding domain Alide_0791 PF00437 Type II/IV secretion system protein Alide_0792 PF00263 Alide_0792 Alide_0792 PF03958 Bacterial type II/III secretion system short domain Alide_0793 PF01203 Alide_0793 Alide_0794 PF04612 Type II secretion system (T2SS), protein M Alide_0795 PF05134 Type II secretion system (T2SS), protein L Alide_0795 PF12693 GspL periplasmic domain Alide_0796 PF03934 Type II secretion system (T2SS), protein K Alide_0797 PF07963 Prokaryotic N-terminal methylation motif Alide_0798 PF02501 Type II secretion system (T2SS), protein I Alide_0798 PF07963 Prokaryotic N-terminal methylation motif Alide_0799 PF07963 Prokaryotic N-terminal methylation motif Alide_0800 PF07963 Prokaryotic N-terminal methylation motif Alide_0800 PF08334 Type II secretion system (T2SS), protein G Alide_0801 PF11356 Type IV pilus biogenesis Alide_0802 PF00300 Histidine phosphatase superfamily (branch 1) Alide_0803 PF02654 Alide_0803 Alide_0804 PF00291 Pyridoxal-phosphate dependent enzyme Alide_0804 PF00585 C-terminal regulatory domain of Threonine dehydratase Alide_0805 PF02566 OsmC-like protein Alide_0806 PF03232 Alide_0806 Alide_0807 PF13609 Gram-negative porin Alide_0808 PF13609 Gram-negative porin Alide_0809 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0810 PF01546 Peptidase family M20/M25/M40 Alide_0810 PF07687 Peptidase dimerisation domain Alide_0811 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0811 PF12911 Alide_0811 Alide_0812 PF00005 ABC transporter Alide_0812 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_0813 PF00005 ABC transporter Alide_0813 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_0814 PF01161 Phosphatidylethanolamine-binding protein Alide_0815 PF01380 SIS domain Alide_0815 PF01418 Helix-turn-helix domain, rpiR family Alide_0816 PF00923 Transaldolase Alide_0817 PF00342 Phosphoglucose isomerase Alide_0818 PF00118 TCP-1/cpn60 chaperonin family Alide_0819 PF00166 Chaperonin 10 Kd subunit Alide_0820 PF00293 NUDIX domain Alide_0820 PF01467 Cytidylyltransferase Alide_0821 PF00438 S-adenosylmethionine synthetase, N-terminal domain Alide_0821 PF02772 S-adenosylmethionine synthetase, central domain Alide_0821 PF02773 S-adenosylmethionine synthetase, C-terminal domain Alide_0822 PF03279 Alide_0822 Alide_0823 PF03279 Alide_0823 Alide_0824 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0824 PF03466 LysR substrate binding domain Alide_0825 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0826 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0827 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_0828 PF04909 Amidohydrolase Alide_0829 PF01926 50S ribosome-binding GTPase Alide_0830 PF00034 Cytochrome c Alide_0831 PF05140 Alide_0831 Alide_0832 PF01578 Alide_0832 Alide_0833 PF00174 Oxidoreductase molybdopterin binding domain Alide_0834 PF01794 Alide_0834 Alide_0835 PF00753 Metallo-beta-lactamase superfamily Alide_0836 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Alide_0836 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Alide_0837 PF13627 Alide_0837 Alide_0838 PF01491 Frataxin-like domain Alide_0839 PF00905 Penicillin binding protein transpeptidase domain Alide_0839 PF00912 Transglycosylase Alide_0839 PF17092 Alide_0839 Alide_0840 PF11104 Type IV pilus assembly protein PilM; Alide_0841 PF05137 Alide_0841 Alide_0842 PF04350 Pilus assembly protein, PilO Alide_0843 PF04351 Pilus assembly protein, PilP Alide_0844 PF00263 Alide_0844 Alide_0844 PF03958 Bacterial type II/III secretion system short domain Alide_0844 PF11741 AMIN domain Alide_0845 PF05345 Putative Ig domain Alide_0846 PF01761 3-dehydroquinate synthase Alide_0847 PF01966 HD domain Alide_0847 PF13286 Phosphohydrolase-associated domain Alide_0848 PF07209 Alide_0848 Alide_0849 PF13679 Alide_0849 Alide_0850 PF00171 Aldehyde dehydrogenase family Alide_0851 PF13458 Periplasmic binding protein Alide_0852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0852 PF03466 LysR substrate binding domain Alide_0853 PF01797 Transposase IS200 like Alide_0854 PF00310 Glutamine amidotransferases class-II Alide_0854 PF01493 GXGXG motif Alide_0854 PF01645 Conserved region in glutamate synthase Alide_0854 PF04898 Glutamate synthase central domain Alide_0855 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_0855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Alide_0856 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_0857 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0858 PF00005 ABC transporter Alide_0859 PF11902 Alide_0859 Alide_0860 PF01564 Spermine/spermidine synthase Alide_0860 PF17284 Alide_0860 Alide_0861 PF02675 S-adenosylmethionine decarboxylase Alide_0862 PF00005 ABC transporter Alide_0863 PF02405 Alide_0863 Alide_0864 PF02470 Alide_0864 Alide_0865 PF04333 Alide_0865 Alide_0866 PF05494 Toluene tolerance, Ttg2 Alide_0867 PF13466 STAS domain Alide_0868 PF00990 GGDEF domain Alide_0868 PF08448 PAS fold Alide_0869 PF00005 ABC transporter Alide_0870 PF01061 Alide_0870 Alide_0871 PF01722 BolA-like protein Alide_0872 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Alide_0873 PF01634 ATP phosphoribosyltransferase Alide_0874 PF00815 Histidinol dehydrogenase Alide_0876 PF01850 PIN domain Alide_0877 PF00155 Aminotransferase class I and II Alide_0878 PF00475 Imidazoleglycerol-phosphate dehydratase Alide_0879 PF00117 Glutamine amidotransferase class-I Alide_0880 PF00977 Histidine biosynthesis protein Alide_0881 PF12138 Alide_0881 Alide_0882 PF16933 Alide_0882 Alide_0883 PF00534 Glycosyl transferases group 1 Alide_0883 PF11997 Alide_0883 Alide_0885 PF16963 Alide_0885 Alide_0887 PF13429 Tetratricopeptide repeat Alide_0887 PF14559 Tetratricopeptide repeat Alide_0888 PF03537 Glycoside-hydrolase family GH114 Alide_0889 PF16363 Alide_0889 Alide_0890 PF00977 Histidine biosynthesis protein Alide_0891 PF01502 Phosphoribosyl-AMP cyclohydrolase Alide_0892 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Alide_0894 PF01734 Patatin-like phospholipase Alide_0895 PF11969 Scavenger mRNA decapping enzyme C-term binding Alide_0896 PF02416 mttA/Hcf106 family Alide_0897 PF02416 mttA/Hcf106 family Alide_0898 PF00902 Sec-independent protein translocase protein (TatC) Alide_0899 PF13180 PDZ domain Alide_0899 PF13365 Trypsin-like peptidase domain Alide_0900 PF01784 NIF3 (NGG1p interacting factor 3) Alide_0901 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Alide_0902 PF01741 Large-conductance mechanosensitive channel, MscL Alide_0903 PF00355 Rieske [2Fe-2S] domain Alide_0903 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Alide_0904 PF00032 Cytochrome b(C-terminal)/b6/petD Alide_0904 PF00033 Cytochrome b(N-terminal)/b6/petB Alide_0905 PF02167 Cytochrome C1 family Alide_0906 PF00043 Glutathione S-transferase, C-terminal domain Alide_0906 PF13417 Glutathione S-transferase, N-terminal domain Alide_0907 PF04386 Stringent starvation protein B Alide_0909 PF01043 SecA preprotein cross-linking domain Alide_0909 PF02810 SEC-C motif Alide_0909 PF07516 SecA Wing and Scaffold domain Alide_0909 PF07517 SecA DEAD-like domain Alide_0910 PF01960 ArgJ family Alide_0911 PF05673 Protein of unknown function (DUF815) Alide_0912 PF00293 NUDIX domain Alide_0913 PF03884 Domain of unknown function (DUF329) Alide_0914 PF07072 Protein of unknown function (DUF1342) Alide_0915 PF01121 Dephospho-CoA kinase Alide_0916 PF01478 Type IV leader peptidase family Alide_0916 PF06750 Alide_0916 Alide_0917 PF00482 Type II secretion system (T2SS), protein F Alide_0918 PF00437 Type II/IV secretion system protein Alide_0918 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alide_0921 PF00665 Integrase core domain Alide_0921 PF13276 Alide_0921 Alide_0922 PF01527 Transposase Alide_0924 PF00589 Phage integrase family Alide_0925 PF00348 Polyprenyl synthetase Alide_0926 PF00829 Ribosomal prokaryotic L21 protein Alide_0927 PF01016 Ribosomal L27 protein Alide_0928 PF01018 GTP1/OBG Alide_0928 PF01926 50S ribosome-binding GTPase Alide_0929 PF00696 Amino acid kinase family Alide_0929 PF01472 PUA domain Alide_0930 PF00293 NUDIX domain Alide_0931 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alide_0931 PF03129 Anticodon binding domain Alide_0931 PF04073 Aminoacyl-tRNA editing domain Alide_0932 PF01464 Transglycosylase SLT domain Alide_0933 PF00571 CBS domain Alide_0933 PF01595 Alide_0933 Alide_0933 PF03471 Transporter associated domain Alide_0934 PF00004 ATPase family associated with various cellular activities (AAA) Alide_0935 PF00462 Glutaredoxin Alide_0936 PF05175 Methyltransferase small domain Alide_0937 PF00472 RF-1 domain Alide_0937 PF03462 PCRF domain Alide_0938 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Alide_0938 PF01488 Shikimate / quinate 5-dehydrogenase Alide_0938 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Alide_0940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0940 PF03466 LysR substrate binding domain Alide_0941 PF03401 Tripartite tricarboxylate transporter family receptor Alide_0942 PF05013 N-formylglutamate amidohydrolase Alide_0943 PF00924 Mechanosensitive ion channel Alide_0943 PF12607 Alide_0943 Alide_0944 PF03009 Glycerophosphoryl diester phosphodiesterase family Alide_0945 PF00005 ABC transporter Alide_0945 PF08402 TOBE domain Alide_0946 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0947 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0948 PF13416 Bacterial extracellular solute-binding protein Alide_0949 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_0949 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_0950 PF01565 FAD binding domain Alide_0950 PF02754 Alide_0950 Alide_0950 PF02913 FAD linked oxidases, C-terminal domain Alide_0950 PF11880 Alide_0950 Alide_0950 PF12447 Alide_0950 Alide_0950 PF13183 4Fe-4S dicluster domain Alide_0951 PF01230 HIT domain Alide_0952 PF06155 Protein of unknown function (DUF971) Alide_0953 PF01209 ubiE/COQ5 methyltransferase family Alide_0954 PF04280 Tim44-like domain Alide_0956 PF03109 Alide_0956 Alide_0957 PF00474 Sodium:solute symporter family Alide_0958 PF09723 Alide_0958 Alide_0959 PF04367 Alide_0959 Alide_0960 PF00152 tRNA synthetases class II (D, K and N) Alide_0960 PF01336 OB-fold nucleic acid binding domain Alide_0960 PF02938 GAD domain Alide_0961 PF00293 NUDIX domain Alide_0962 PF03372 Endonuclease/Exonuclease/phosphatase family Alide_0963 PF13091 PLD-like domain Alide_0964 PF01227 GTP cyclohydrolase I Alide_0965 PF04940 Sensors of blue-light using FAD Alide_0966 PF00892 EamA-like transporter family Alide_0967 PF00512 His Kinase A (phospho-acceptor) domain Alide_0967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_0967 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Alide_0968 PF00072 Response regulator receiver domain Alide_0968 PF00196 Bacterial regulatory proteins, luxR family Alide_0969 PF00034 Cytochrome c Alide_0972 PF01810 Alide_0972 Alide_0973 PF01425 Amidase Alide_0974 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_0975 PF00005 ABC transporter Alide_0975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_0976 PF00005 ABC transporter Alide_0976 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_0977 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0978 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0979 PF12838 4Fe-4S dicluster domain Alide_0980 PF01195 Peptidyl-tRNA hydrolase Alide_0981 PF01386 Ribosomal L25p family Alide_0981 PF14693 Ribosomal protein TL5, C-terminal domain Alide_0982 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Alide_0982 PF14572 Phosphoribosyl synthetase-associated domain Alide_0983 PF00288 GHMP kinases N terminal domain Alide_0983 PF08544 GHMP kinases C terminal Alide_0984 PF03550 Outer membrane lipoprotein LolB Alide_0985 PF13432 Tetratricopeptide repeat Alide_0985 PF14559 Tetratricopeptide repeat Alide_0986 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Alide_0986 PF06827 Zinc finger found in FPG and IleRS Alide_0986 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Alide_0987 PF00350 Dynamin family Alide_0988 PF00633 Helix-hairpin-helix motif Alide_0988 PF00730 HhH-GPD superfamily base excision DNA repair protein Alide_0988 PF14815 NUDIX domain Alide_0989 PF03668 Alide_0989 Alide_0990 PF02463 RecF/RecN/SMC N terminal domain Alide_0991 PF01513 ATP-NAD kinase Alide_0992 PF01628 HrcA protein C terminal domain Alide_0992 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Alide_0993 PF03737 Demethylmenaquinone methyltransferase Alide_0994 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_0994 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_0995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_0995 PF03466 LysR substrate binding domain Alide_0996 PF00155 Aminotransferase class I and II Alide_0997 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0998 PF00528 Binding-protein-dependent transport system inner membrane component Alide_0999 PF00005 ABC transporter Alide_1000 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1001 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1002 PF01177 Asp/Glu/Hydantoin racemase Alide_1004 PF02682 Allophanate hydrolase subunit 1 Alide_1005 PF02626 Allophanate hydrolase subunit 2 Alide_1006 PF03746 LamB/YcsF family Alide_1007 PF00364 Biotin-requiring enzyme Alide_1008 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Alide_1008 PF02785 Biotin carboxylase C-terminal domain Alide_1008 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_1009 PF05036 Sporulation related domain Alide_1010 PF11720 Peptidase inhibitor I78 family Alide_1011 PF04055 Radical SAM superfamily Alide_1011 PF06969 HemN C-terminal domain Alide_1012 PF01725 Ham1 family Alide_1013 PF01138 3' exoribonuclease family, domain 1 Alide_1013 PF03725 3' exoribonuclease family, domain 2 Alide_1014 PF13672 Protein phosphatase 2C Alide_1015 PF00069 Protein kinase domain Alide_1016 PF03755 Alide_1016 Alide_1016 PF08340 Alide_1016 Alide_1017 PF14870 Photosynthesis system II assembly factor YCF48 Alide_1020 PF04865 Alide_1020 Alide_1021 PF04965 Gene 25-like lysozyme Alide_1027 PF13699 Alide_1027 Alide_1029 PF13699 Alide_1029 Alide_1030 PF00004 ATPase family associated with various cellular activities (AAA) Alide_1031 PF14065 Alide_1031 Alide_1034 PF06841 Alide_1034 Alide_1035 PF04984 Phage tail sheath protein Alide_1035 PF17482 Alide_1035 Alide_1036 PF00625 Guanylate kinase Alide_1037 PF01192 RNA polymerase Rpb6 Alide_1038 PF02824 TGS domain Alide_1038 PF04607 Region found in RelA / SpoT proteins Alide_1038 PF13291 ACT domain Alide_1038 PF13328 HD domain Alide_1039 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide_1039 PF03449 Transcription elongation factor, N-terminal Alide_1041 PF00312 Ribosomal protein S15 Alide_1042 PF00013 KH domain Alide_1042 PF00575 S1 RNA binding domain Alide_1042 PF01138 3' exoribonuclease family, domain 1 Alide_1042 PF03725 3' exoribonuclease family, domain 2 Alide_1042 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Alide_1043 PF00107 Zinc-binding dehydrogenase Alide_1043 PF08240 Alcohol dehydrogenase GroES-like domain Alide_1044 PF00121 Triosephosphate isomerase Alide_1045 PF03840 Preprotein translocase SecG subunit Alide_1046 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Alide_1047 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Alide_1048 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Alide_1049 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Alide_1050 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Alide_1051 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alide_1051 PF10531 SLBB domain Alide_1051 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide_1052 PF00384 Molybdopterin oxidoreductase Alide_1052 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Alide_1052 PF13510 2Fe-2S iron-sulfur cluster binding domain Alide_1053 PF00146 NADH dehydrogenase Alide_1054 PF12838 4Fe-4S dicluster domain Alide_1055 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Alide_1056 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Alide_1057 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Alide_1057 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alide_1058 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Alide_1059 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Alide_1060 PF10993 Alide_1060 Alide_1061 PF06676 Alide_1061 Alide_1063 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide_1063 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Alide_1064 PF01119 DNA mismatch repair protein, C-terminal domain Alide_1064 PF08676 MutL C terminal dimerisation domain Alide_1064 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1065 PF05433 Alide_1065 Alide_1066 PF09335 Alide_1066 Alide_1067 PF01979 Amidohydrolase family Alide_1068 PF00860 Permease family Alide_1069 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1069 PF03466 LysR substrate binding domain Alide_1070 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide_1070 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alide_1071 PF00941 FAD binding domain in molybdopterin dehydrogenase Alide_1071 PF01799 [2Fe-2S] binding domain Alide_1071 PF03450 CO dehydrogenase flavoprotein C-terminal domain Alide_1072 PF07883 Cupin domain Alide_1073 PF01520 N-acetylmuramoyl-L-alanine amidase Alide_1073 PF11741 AMIN domain Alide_1074 PF02367 Uncharacterised P-loop hydrolase UPF0079 Alide_1076 PF03547 Alide_1076 Alide_1077 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1078 PF00589 Phage integrase family Alide_1078 PF02899 Phage integrase, N-terminal SAM-like domain Alide_1079 PF08447 PAS fold Alide_1080 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1081 PF00563 EAL domain Alide_1081 PF08668 HDOD domain Alide_1082 PF00563 EAL domain Alide_1082 PF08668 HDOD domain Alide_1083 PF04305 Alide_1083 Alide_1084 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_1085 PF01430 Hsp33 protein Alide_1086 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1087 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1088 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1089 PF00005 ABC transporter Alide_1090 PF04977 Septum formation initiator Alide_1091 PF00113 Enolase, C-terminal TIM barrel domain Alide_1091 PF03952 Enolase, N-terminal domain Alide_1092 PF07045 Protein of unknown function (DUF1330) Alide_1093 PF00793 DAHP synthetase I family Alide_1094 PF00117 Glutamine amidotransferase class-I Alide_1094 PF06418 CTP synthase N-terminus Alide_1095 PF02441 Flavoprotein Alide_1095 PF04127 DNA / pantothenate metabolism flavoprotein Alide_1097 PF00692 dUTPase Alide_1099 PF08007 Cupin superfamily protein Alide_1101 PF06804 NlpB/DapX lipoprotein Alide_1102 PF00701 Dihydrodipicolinate synthetase family Alide_1103 PF13489 Methyltransferase domain Alide_1105 PF07690 Major Facilitator Superfamily Alide_1106 PF00204 DNA gyrase B Alide_1106 PF00986 DNA gyrase B subunit, carboxyl terminus Alide_1106 PF01751 Toprim domain Alide_1106 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1107 PF00521 DNA gyrase/topoisomerase IV, subunit A Alide_1107 PF03989 DNA gyrase C-terminal domain, beta-propeller Alide_1108 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease Alide_1109 PF00753 Metallo-beta-lactamase superfamily Alide_1109 PF03772 Alide_1109 Alide_1109 PF13567 Alide_1109 Alide_1110 PF00171 Aldehyde dehydrogenase family Alide_1111 PF00581 Rhodanese-like domain Alide_1113 PF00355 Rieske [2Fe-2S] domain Alide_1113 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Alide_1114 PF02609 Exonuclease VII small subunit Alide_1115 PF00348 Polyprenyl synthetase Alide_1116 PF02779 Transketolase, pyrimidine binding domain Alide_1116 PF02780 Transketolase, C-terminal domain Alide_1116 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Alide_1117 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_1118 PF00270 DEAD/DEAH box helicase Alide_1118 PF00271 Helicase conserved C-terminal domain Alide_1118 PF06224 Alide_1118 Alide_1118 PF08494 Alide_1118 Alide_1119 PF06808 Alide_1119 Alide_1120 PF04290 Alide_1120 Alide_1121 PF00459 Inositol monophosphatase family Alide_1122 PF00588 SpoU rRNA Methylase family Alide_1123 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_1124 PF00881 Nitroreductase family Alide_1125 PF00107 Zinc-binding dehydrogenase Alide_1125 PF08240 Alcohol dehydrogenase GroES-like domain Alide_1126 PF00994 Probable molybdopterin binding domain Alide_1127 PF04751 Protein of unknown function (DUF615) Alide_1128 PF01523 Putative modulator of DNA gyrase Alide_1132 PF00353 Hemolysin-type calcium-binding repeat (2 copies) Alide_1132 PF06594 Alide_1132 Alide_1132 PF12760 Transposase zinc-ribbon domain Alide_1135 PF00717 Peptidase S24-like Alide_1136 PF01527 Transposase Alide_1139 PF10923 Alide_1139 Alide_1140 PF00270 DEAD/DEAH box helicase Alide_1140 PF00271 Helicase conserved C-terminal domain Alide_1141 PF05681 Alide_1141 Alide_1141 PF05683 Fumarase C-terminus Alide_1142 PF00206 Lyase Alide_1142 PF10415 Fumarase C C-terminus Alide_1143 PF00027 Cyclic nucleotide-binding domain Alide_1143 PF13545 Crp-like helix-turn-helix domain Alide_1144 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Alide_1145 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1146 PF00005 ABC transporter Alide_1146 PF00571 CBS domain Alide_1147 PF00501 AMP-binding enzyme Alide_1147 PF13193 AMP-binding enzyme C-terminal domain Alide_1147 PF16177 Alide_1147 Alide_1148 PF00092 von Willebrand factor type A domain Alide_1148 PF07584 Alide_1148 Alide_1148 PF13519 von Willebrand factor type A domain Alide_1149 PF01882 Alide_1149 Alide_1150 PF07726 ATPase family associated with various cellular activities (AAA) Alide_1151 PF13365 Trypsin-like peptidase domain Alide_1152 PF02627 Carboxymuconolactone decarboxylase family Alide_1153 PF01022 Bacterial regulatory protein, arsR family Alide_1154 PF11127 Protein of unknown function (DUF2892) Alide_1155 PF01026 TatD related DNase Alide_1156 PF03167 Uracil DNA glycosylase superfamily Alide_1158 PF00437 Type II/IV secretion system protein Alide_1158 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alide_1159 PF07331 Alide_1159 Alide_1160 PF01970 Alide_1160 Alide_1161 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_1162 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_1163 PF00563 EAL domain Alide_1163 PF00990 GGDEF domain Alide_1163 PF12860 Alide_1163 Alide_1164 PF00892 EamA-like transporter family Alide_1165 PF00107 Zinc-binding dehydrogenase Alide_1165 PF08240 Alcohol dehydrogenase GroES-like domain Alide_1166 PF00293 NUDIX domain Alide_1167 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1167 PF03466 LysR substrate binding domain Alide_1168 PF13593 SBF-like CPA transporter family (DUF4137) Alide_1169 PF01895 PhoU domain Alide_1169 PF02690 Alide_1169 Alide_1170 PF00149 Calcineurin-like phosphoesterase Alide_1171 PF00005 ABC transporter Alide_1171 PF08402 TOBE domain Alide_1172 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1173 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1174 PF13343 Bacterial extracellular solute-binding protein Alide_1175 PF00356 Bacterial regulatory proteins, lacI family Alide_1175 PF13377 Periplasmic binding protein-like domain Alide_1176 PF01252 Alide_1176 Alide_1177 PF00133 tRNA synthetases class I (I, L, M and V) Alide_1177 PF06827 Zinc finger found in FPG and IleRS Alide_1177 PF08264 Anticodon-binding domain of tRNA Alide_1178 PF01687 Riboflavin kinase Alide_1178 PF06574 FAD synthetase Alide_1179 PF14279 Alide_1179 Alide_1180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1181 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1181 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1181 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1182 PF04337 Protein of unknown function, DUF480 Alide_1183 PF00551 Formyl transferase Alide_1184 PF01189 NOL1/NOP2/sun family Alide_1184 PF17125 Alide_1184 Alide_1185 PF00471 Ribosomal protein L33 Alide_1186 PF00830 Ribosomal L28 family Alide_1187 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_1188 PF01580 FtsK/SpoIIIE family Alide_1188 PF09397 Ftsk gamma domain Alide_1188 PF13491 Alide_1188 Alide_1189 PF03548 Outer membrane lipoprotein carrier protein LolA Alide_1190 PF01040 UbiA prenyltransferase family Alide_1191 PF03167 Uracil DNA glycosylase superfamily Alide_1192 PF00004 ATPase family associated with various cellular activities (AAA) Alide_1192 PF12002 MgsA AAA+ ATPase C terminal Alide_1192 PF16193 Alide_1192 Alide_1193 PF02653 Alide_1193 Alide_1194 PF02653 Alide_1194 Alide_1195 PF00005 ABC transporter Alide_1195 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_1196 PF00005 ABC transporter Alide_1197 PF04342 Alide_1197 Alide_1198 PF13505 Outer membrane protein beta-barrel domain Alide_1199 PF01865 Protein of unknown function DUF47 Alide_1200 PF01384 Alide_1200 Alide_1202 PF13420 Acetyltransferase (GNAT) domain Alide_1203 PF00886 Ribosomal protein S16 Alide_1204 PF01782 RimM N-terminal domain Alide_1204 PF05239 PRC-barrel domain Alide_1205 PF01746 tRNA (Guanine-1)-methyltransferase Alide_1206 PF01245 Ribosomal protein L19 Alide_1207 PF00293 NUDIX domain Alide_1208 PF03186 Alide_1208 Alide_1209 PF00155 Aminotransferase class I and II Alide_1210 PF00916 Alide_1210 Alide_1210 PF01740 STAS domain Alide_1211 PF03193 Protein of unknown function, DUF258 Alide_1212 PF01329 Pterin 4 alpha carbinolamine dehydratase Alide_1213 PF01435 Peptidase family M48 Alide_1213 PF16491 Alide_1213 Alide_1214 PF00929 Exonuclease Alide_1215 PF13458 Periplasmic binding protein Alide_1216 PF00270 DEAD/DEAH box helicase Alide_1216 PF00271 Helicase conserved C-terminal domain Alide_1217 PF00990 GGDEF domain Alide_1217 PF13188 PAS domain Alide_1218 PF07690 Major Facilitator Superfamily Alide_1219 PF04314 Protein of unknown function (DUF461) Alide_1221 PF00027 Cyclic nucleotide-binding domain Alide_1221 PF13545 Crp-like helix-turn-helix domain Alide_1222 PF00593 TonB dependent receptor Alide_1222 PF07715 TonB-dependent Receptor Plug Domain Alide_1223 PF02621 Menaquinone biosynthesis Alide_1224 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1225 PF00005 ABC transporter Alide_1226 PF05940 Alide_1226 Alide_1227 PF00593 TonB dependent receptor Alide_1227 PF07715 TonB-dependent Receptor Plug Domain Alide_1228 PF02514 Alide_1228 Alide_1230 PF01618 Alide_1230 Alide_1231 PF09919 Alide_1231 Alide_1232 PF00589 Phage integrase family Alide_1233 PF13986 Alide_1233 Alide_1236 PF00145 C-5 cytosine-specific DNA methylase Alide_1242 PF05840 Alide_1242 Alide_1246 PF04606 Alide_1246 Alide_1250 PF00717 Peptidase S24-like Alide_1251 PF13280 Alide_1251 Alide_1253 PF02954 Bacterial regulatory protein, Fis family Alide_1253 PF10387 Protein of unknown function (DUF2442) Alide_1254 PF13711 Alide_1254 Alide_1255 PF05954 Phage late control gene D protein (GPD) Alide_1256 PF06995 Alide_1256 Alide_1257 PF10145 Alide_1257 Alide_1259 PF06528 Alide_1259 Alide_1260 PF10109 Alide_1260 Alide_1261 PF04985 Alide_1261 Alide_1262 PF04984 Phage tail sheath protein Alide_1262 PF17482 Alide_1262 Alide_1266 PF05593 Alide_1266 Alide_1268 PF09684 Alide_1268 Alide_1269 PF04865 Alide_1269 Alide_1270 PF04965 Gene 25-like lysozyme Alide_1271 PF04717 Phage-related baseplate assembly protein Alide_1272 PF05069 Alide_1272 Alide_1274 PF06891 Alide_1274 Alide_1275 PF10721 Alide_1275 Alide_1277 PF00959 Phage lysozyme Alide_1279 PF05489 Phage Tail Protein X Alide_1280 PF05926 Alide_1280 Alide_1281 PF05944 Alide_1281 Alide_1282 PF05125 Alide_1282 Alide_1283 PF05929 Alide_1283 Alide_1284 PF03237 Terminase-like family Alide_1284 PF06056 Putative ATPase subunit of terminase (gpP-like) Alide_1284 PF17289 Alide_1284 Alide_1285 PF04860 Phage portal protein Alide_1286 PF00478 IMP dehydrogenase / GMP reductase domain Alide_1287 PF00580 UvrD/REP helicase N-terminal domain Alide_1287 PF13361 UvrD-like helicase C-terminal domain Alide_1288 PF05787 Bacterial protein of unknown function (DUF839) Alide_1289 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1289 PF00990 GGDEF domain Alide_1291 PF01636 Phosphotransferase enzyme family Alide_1294 PF00476 DNA polymerase family A Alide_1294 PF01367 5'-3' exonuclease, C-terminal SAM fold Alide_1294 PF01612 3'-5' exonuclease Alide_1294 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Alide_1295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1295 PF03466 LysR substrate binding domain Alide_1296 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_1297 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1298 PF02627 Carboxymuconolactone decarboxylase family Alide_1299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1299 PF03466 LysR substrate binding domain Alide_1300 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1301 PF02515 CoA-transferase family III Alide_1302 PF00378 Enoyl-CoA hydratase/isomerase family Alide_1303 PF01738 Dienelactone hydrolase family Alide_1304 PF02535 Alide_1304 Alide_1305 PF00072 Response regulator receiver domain Alide_1305 PF04397 LytTr DNA-binding domain Alide_1306 PF12710 haloacid dehalogenase-like hydrolase Alide_1307 PF08125 Mannitol dehydrogenase C-terminal domain Alide_1307 PF13419 Haloacid dehalogenase-like hydrolase Alide_1309 PF00270 DEAD/DEAH box helicase Alide_1309 PF00271 Helicase conserved C-terminal domain Alide_1309 PF02559 CarD-like/TRCF domain Alide_1309 PF03461 TRCF domain Alide_1310 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Alide_1311 PF02542 YgbB family Alide_1312 PF00512 His Kinase A (phospho-acceptor) domain Alide_1312 PF00672 HAMP domain Alide_1312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1312 PF16524 Alide_1312 Alide_1313 PF00072 Response regulator receiver domain Alide_1313 PF00486 Transcriptional regulatory protein, C terminal Alide_1314 PF04402 Protein of unknown function (DUF541) Alide_1315 PF00106 short chain dehydrogenase Alide_1316 PF12697 Alpha/beta hydrolase family Alide_1317 PF02824 TGS domain Alide_1317 PF04607 Region found in RelA / SpoT proteins Alide_1317 PF13291 ACT domain Alide_1317 PF13328 HD domain Alide_1319 PF00076 RNA recognition motif Alide_1320 PF05233 Alide_1320 Alide_1320 PF07879 Alide_1320 Alide_1321 PF00919 Uncharacterized protein family UPF0004 Alide_1321 PF04055 Radical SAM superfamily Alide_1322 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide_1323 PF01638 HxlR-like helix-turn-helix Alide_1324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1324 PF03466 LysR substrate binding domain Alide_1325 PF00682 HMGL-like Alide_1326 PF02515 CoA-transferase family III Alide_1327 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1328 PF02558 Ketopantoate reductase PanE/ApbA Alide_1328 PF08546 Ketopantoate reductase PanE/ApbA C terminal Alide_1329 PF03352 Methyladenine glycosylase Alide_1331 PF00140 Sigma-70 factor, region 1 Alide_1331 PF03979 Sigma-70 factor, region 1 Alide_1331 PF04539 Sigma-70 region 3 Alide_1331 PF04542 Sigma-70 region 2 Alide_1331 PF04545 Sigma-70, region 4 Alide_1331 PF04546 Sigma-70, non-essential region Alide_1332 PF01807 CHC2 zinc finger Alide_1332 PF08275 DNA primase catalytic core, N-terminal domain Alide_1332 PF10410 DnaB-helicase binding domain of primase Alide_1332 PF13662 Toprim domain Alide_1333 PF00501 AMP-binding enzyme Alide_1333 PF13193 AMP-binding enzyme C-terminal domain Alide_1334 PF13091 PLD-like domain Alide_1335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1335 PF12727 PBP superfamily domain Alide_1336 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1337 PF00005 ABC transporter Alide_1338 PF12849 PBP superfamily domain Alide_1340 PF00005 ABC transporter Alide_1340 PF03459 TOBE domain Alide_1341 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1342 PF13531 Bacterial extracellular solute-binding protein Alide_1343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1343 PF03459 TOBE domain Alide_1344 PF00005 ABC transporter Alide_1344 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_1345 PF00005 ABC transporter Alide_1346 PF13458 Periplasmic binding protein Alide_1347 PF13458 Periplasmic binding protein Alide_1348 PF02653 Alide_1348 Alide_1349 PF02653 Alide_1349 Alide_1350 PF07143 Hydroxyneurosporene synthase (CrtC) Alide_1350 PF17186 Alide_1350 Alide_1351 PF00291 Pyridoxal-phosphate dependent enzyme Alide_1352 PF02687 Alide_1352 Alide_1353 PF00011 Hsp20/alpha crystallin family Alide_1354 PF00005 ABC transporter Alide_1355 PF01715 IPP transferase Alide_1356 PF07690 Major Facilitator Superfamily Alide_1357 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_1357 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_1358 PF01230 HIT domain Alide_1359 PF13609 Gram-negative porin Alide_1360 PF13545 Crp-like helix-turn-helix domain Alide_1361 PF00990 GGDEF domain Alide_1361 PF08447 PAS fold Alide_1362 PF00005 ABC transporter Alide_1363 PF02653 Alide_1363 Alide_1364 PF02653 Alide_1364 Alide_1365 PF02608 Basic membrane protein Alide_1366 PF02608 Basic membrane protein Alide_1367 PF01266 FAD dependent oxidoreductase Alide_1368 PF00005 ABC transporter Alide_1369 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1370 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1371 PF01614 Bacterial transcriptional regulator Alide_1371 PF09339 IclR helix-turn-helix domain Alide_1372 PF05899 Protein of unknown function (DUF861) Alide_1373 PF00962 Adenosine/AMP deaminase Alide_1374 PF04775 Acyl-CoA thioester hydrolase/BAAT N-terminal region Alide_1374 PF08840 BAAT / Acyl-CoA thioester hydrolase C terminal Alide_1375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_1376 PF00005 ABC transporter Alide_1376 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_1377 PF00005 ABC transporter Alide_1377 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_1378 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1378 PF12911 Alide_1378 Alide_1379 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1380 PF03466 LysR substrate binding domain Alide_1381 PF04199 Putative cyclase Alide_1382 PF03692 Alide_1382 Alide_1383 PF04023 FeoA domain Alide_1384 PF02421 Ferrous iron transport protein B Alide_1384 PF07664 Alide_1384 Alide_1384 PF07670 Nucleoside recognition Alide_1386 PF03692 Alide_1386 Alide_1387 PF11160 Alide_1387 Alide_1388 PF04343 Alide_1388 Alide_1389 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Alide_1389 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Alide_1390 PF00202 Aminotransferase class-III Alide_1391 PF12112 Protein of unknown function (DUF3579) Alide_1392 PF03737 Demethylmenaquinone methyltransferase Alide_1394 PF01649 Ribosomal protein S20 Alide_1395 PF03023 Alide_1395 Alide_1396 PF13369 Alide_1396 Alide_1396 PF13371 Tetratricopeptide repeat Alide_1397 PF00582 Universal stress protein family Alide_1398 PF01594 Alide_1398 Alide_1399 PF00586 AIR synthase related protein, N-terminal domain Alide_1399 PF02769 AIR synthase related protein, C-terminal domain Alide_1400 PF01019 Gamma-glutamyltranspeptidase Alide_1401 PF00308 Bacterial dnaA protein Alide_1402 PF12710 haloacid dehalogenase-like hydrolase Alide_1403 PF01743 Poly A polymerase head domain Alide_1403 PF12626 Polymerase A arginine-rich C-terminus Alide_1403 PF12627 Probable RNA and SrmB- binding site of polymerase A Alide_1404 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Alide_1405 PF00535 Glycosyl transferase family 2 Alide_1406 PF13231 Alide_1406 Alide_1407 PF04138 Alide_1407 Alide_1408 PF04794 YdjC-like protein Alide_1409 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1410 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1411 PF01208 Uroporphyrinogen decarboxylase (URO-D) Alide_1412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1412 PF03466 LysR substrate binding domain Alide_1413 PF00291 Pyridoxal-phosphate dependent enzyme Alide_1414 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_1414 PF00175 Oxidoreductase NAD-binding domain Alide_1414 PF00970 Oxidoreductase FAD-binding domain Alide_1415 PF01370 NAD dependent epimerase/dehydratase family Alide_1416 PF13511 Alide_1416 Alide_1418 PF01609 Transposase DDE domain Alide_1418 PF05598 Alide_1418 Alide_1419 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1420 PF02515 CoA-transferase family III Alide_1421 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1421 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1421 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1422 PF03466 LysR substrate binding domain Alide_1423 PF04172 Alide_1423 Alide_1424 PF03788 Alide_1424 Alide_1428 PF07589 Alide_1428 Alide_1429 PF05521 Phage head-tail joining protein Alide_1430 PF05135 Phage gp6-like head-tail connector protein Alide_1431 PF03354 Alide_1431 Alide_1433 PF01844 HNH endonuclease Alide_1434 PF04860 Phage portal protein Alide_1435 PF04586 Alide_1435 Alide_1436 PF05065 Phage capsid family Alide_1439 PF01527 Transposase Alide_1440 PF00665 Integrase core domain Alide_1440 PF13276 Alide_1440 Alide_1441 PF14090 Alide_1441 Alide_1442 PF05930 Prophage CP4-57 regulatory protein (AlpA) Alide_1445 PF00589 Phage integrase family Alide_1445 PF13356 Domain of unknown function (DUF4102) Alide_1446 PF00246 Zinc carboxypeptidase Alide_1447 PF00270 DEAD/DEAH box helicase Alide_1447 PF00271 Helicase conserved C-terminal domain Alide_1448 PF00005 ABC transporter Alide_1448 PF12848 ABC transporter Alide_1449 PF16868 Alide_1449 Alide_1450 PF03576 Peptidase family S58 Alide_1451 PF04214 Alide_1451 Alide_1452 PF00127 Copper binding proteins, plastocyanin/azurin family Alide_1454 PF02588 Alide_1454 Alide_1455 PF00122 E1-E2 ATPase Alide_1455 PF00702 haloacid dehalogenase-like hydrolase Alide_1456 PF13411 MerR HTH family regulatory protein Alide_1457 PF02405 Alide_1457 Alide_1458 PF02470 Alide_1458 Alide_1460 PF13714 Phosphoenolpyruvate phosphomutase Alide_1461 PF01256 Carbohydrate kinase Alide_1461 PF03853 YjeF-related protein N-terminus Alide_1462 PF01266 FAD dependent oxidoreductase Alide_1463 PF01425 Amidase Alide_1464 PF00318 Ribosomal protein S2 Alide_1465 PF00889 Elongation factor TS Alide_1466 PF00696 Amino acid kinase family Alide_1467 PF01765 Ribosome recycling factor Alide_1468 PF01255 Putative undecaprenyl diphosphate synthase Alide_1469 PF01148 Cytidylyltransferase family Alide_1470 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Alide_1470 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Alide_1470 PF13288 DXP reductoisomerase C-terminal domain Alide_1471 PF02163 Peptidase family M50 Alide_1472 PF01103 Surface antigen Alide_1472 PF07244 Surface antigen variable number repeat Alide_1473 PF03938 Outer membrane protein (OmpH-like) Alide_1474 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_1474 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Alide_1474 PF14602 Hexapeptide repeat of succinyl-transferase Alide_1475 PF07977 FabA-like domain Alide_1476 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_1476 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Alide_1477 PF02684 Alide_1477 Alide_1478 PF01351 Ribonuclease HII Alide_1479 PF00588 SpoU rRNA Methylase family Alide_1480 PF00589 Phage integrase family Alide_1480 PF13356 Domain of unknown function (DUF4102) Alide_1481 PF01527 Transposase Alide_1482 PF00665 Integrase core domain Alide_1482 PF13276 Alide_1482 Alide_1484 PF00316 Fructose-1-6-bisphosphatase Alide_1485 PF01433 Peptidase family M1 Alide_1485 PF11940 Domain of unknown function (DUF3458) Alide_1485 PF17432 Alide_1485 Alide_1487 PF16654 Alide_1487 Alide_1488 PF00561 alpha/beta hydrolase fold Alide_1489 PF13343 Bacterial extracellular solute-binding protein Alide_1490 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1491 PF00005 ABC transporter Alide_1491 PF08402 TOBE domain Alide_1492 PF00248 Aldo/keto reductase family Alide_1493 PF04073 Aminoacyl-tRNA editing domain Alide_1494 PF02660 Alide_1494 Alide_1496 PF13975 Alide_1496 Alide_1497 PF04461 Protein of unknown function (DUF520) Alide_1498 PF01565 FAD binding domain Alide_1498 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Alide_1499 PF03779 Alide_1499 Alide_1500 PF02592 Alide_1500 Alide_1501 PF06508 Queuosine biosynthesis protein QueC Alide_1502 PF01968 Hydantoinase/oxoprolinase Alide_1502 PF05378 Alide_1502 Alide_1503 PF02538 Alide_1503 Alide_1504 PF08882 Alide_1504 Alide_1505 PF00158 Sigma-54 interaction domain Alide_1505 PF01590 GAF domain Alide_1505 PF02954 Bacterial regulatory protein, Fis family Alide_1506 PF00764 Arginosuccinate synthase Alide_1507 PF06865 Protein of unknown function (DUF1255) Alide_1508 PF05433 Alide_1508 Alide_1509 PF03960 ArsC family Alide_1510 PF02875 Mur ligase family, glutamate ligase domain Alide_1510 PF08245 Mur ligase middle domain Alide_1511 PF05036 Sporulation related domain Alide_1512 PF02674 Alide_1512 Alide_1513 PF00156 Phosphoribosyl transferase domain Alide_1513 PF13537 Glutamine amidotransferase domain Alide_1514 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide_1515 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alide_1516 PF00106 short chain dehydrogenase Alide_1520 PF03050 Alide_1520 Alide_1520 PF13005 Alide_1520 Alide_1520 PF13007 Alide_1520 Alide_1520 PF13817 Alide_1520 Alide_1521 PF05717 Alide_1521 Alide_1522 PF01527 Transposase Alide_1524 PF13683 Alide_1524 Alide_1525 PF01527 Transposase Alide_1526 PF12760 Transposase zinc-ribbon domain Alide_1526 PF12762 Alide_1526 Alide_1529 PF00717 Peptidase S24-like Alide_1530 PF01527 Transposase Alide_1531 PF00665 Integrase core domain Alide_1531 PF13276 Alide_1531 Alide_1532 PF13416 Bacterial extracellular solute-binding protein Alide_1533 PF09361 Alide_1533 Alide_1534 PF03061 Thioesterase superfamily Alide_1535 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Alide_1536 PF16980 Alide_1536 Alide_1537 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_1537 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_1538 PF02646 Alide_1538 Alide_1539 PF07690 Major Facilitator Superfamily Alide_1540 PF03641 Possible lysine decarboxylase Alide_1541 PF02537 Alide_1541 Alide_1543 PF03334 Alide_1543 Alide_1544 PF04066 Alide_1544 Alide_1545 PF01899 Alide_1545 Alide_1546 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Alide_1547 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Alide_1548 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Alide_1548 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alide_1548 PF04039 Alide_1548 Alide_1548 PF13244 Alide_1548 Alide_1549 PF12836 Helix-hairpin-helix motif Alide_1551 PF06305 Alide_1551 Alide_1552 PF13616 PPIC-type PPIASE domain Alide_1553 PF01722 BolA-like protein Alide_1554 PF04279 Alide_1554 Alide_1555 PF01641 SelR domain Alide_1558 PF13458 Periplasmic binding protein Alide_1559 PF02653 Alide_1559 Alide_1560 PF02653 Alide_1560 Alide_1561 PF00005 ABC transporter Alide_1561 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_1562 PF00005 ABC transporter Alide_1563 PF00378 Enoyl-CoA hydratase/isomerase family Alide_1563 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_1563 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_1564 PF00108 Thiolase, N-terminal domain Alide_1564 PF02803 Thiolase, C-terminal domain Alide_1565 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1566 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1567 PF00528 Binding-protein-dependent transport system inner membrane component Alide_1568 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1568 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1568 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1568 PF12418 Alide_1568 Alide_1568 PF12806 Alide_1568 Alide_1569 PF03358 NADPH-dependent FMN reductase Alide_1570 PF00892 EamA-like transporter family Alide_1574 PF08774 VRR-NUC domain Alide_1575 PF08707 Alide_1575 Alide_1575 PF13481 AAA domain Alide_1580 PF00589 Phage integrase family Alide_1580 PF13356 Domain of unknown function (DUF4102) Alide_1581 PF02321 Outer membrane efflux protein Alide_1582 PF00581 Rhodanese-like domain Alide_1583 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Alide_1584 PF00440 Bacterial regulatory proteins, tetR family Alide_1584 PF16859 Alide_1584 Alide_1585 PF01625 Peptide methionine sulfoxide reductase Alide_1587 PF00593 TonB dependent receptor Alide_1587 PF07715 TonB-dependent Receptor Plug Domain Alide_1589 PF02417 Alide_1589 Alide_1590 PF03547 Alide_1590 Alide_1591 PF01243 Pyridoxamine 5'-phosphate oxidase Alide_1592 PF04752 Alide_1592 Alide_1593 PF00691 OmpA family Alide_1594 PF01904 Protein of unknown function DUF72 Alide_1596 PF00575 S1 RNA binding domain Alide_1596 PF09371 Tex-like protein N-terminal domain Alide_1596 PF12836 Helix-hairpin-helix motif Alide_1596 PF16921 Alide_1596 Alide_1597 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1598 PF01796 Alide_1598 Alide_1598 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) Alide_1600 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1601 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_1602 PF00501 AMP-binding enzyme Alide_1602 PF13193 AMP-binding enzyme C-terminal domain Alide_1603 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1604 PF00356 Bacterial regulatory proteins, lacI family Alide_1604 PF13377 Periplasmic binding protein-like domain Alide_1605 PF00285 Citrate synthase Alide_1606 PF02515 CoA-transferase family III Alide_1607 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1608 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1609 PF04909 Amidohydrolase Alide_1610 PF01614 Bacterial transcriptional regulator Alide_1610 PF09339 IclR helix-turn-helix domain Alide_1611 PF08668 HDOD domain Alide_1613 PF07859 alpha/beta hydrolase fold Alide_1614 PF03061 Thioesterase superfamily Alide_1614 PF13673 Acetyltransferase (GNAT) domain Alide_1615 PF03928 Domain of unknown function (DUF336) Alide_1616 PF00072 Response regulator receiver domain Alide_1616 PF00196 Bacterial regulatory proteins, luxR family Alide_1617 PF00512 His Kinase A (phospho-acceptor) domain Alide_1617 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1618 PF07690 Major Facilitator Superfamily Alide_1619 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Alide_1620 PF01571 Aminomethyltransferase folate-binding domain Alide_1620 PF08669 Glycine cleavage T-protein C-terminal barrel domain Alide_1621 PF02618 YceG-like family Alide_1622 PF02223 Thymidylate kinase Alide_1623 PF13177 DNA polymerase III, delta subunit Alide_1624 PF07238 PilZ domain Alide_1625 PF01026 TatD related DNase Alide_1626 PF12796 Ankyrin repeats (3 copies) Alide_1628 PF10087 Alide_1628 Alide_1629 PF00392 Bacterial regulatory proteins, gntR family Alide_1629 PF07729 FCD domain Alide_1630 PF07690 Major Facilitator Superfamily Alide_1631 PF03746 LamB/YcsF family Alide_1632 PF07286 Protein of unknown function (DUF1445) Alide_1633 PF02626 Allophanate hydrolase subunit 2 Alide_1633 PF02682 Allophanate hydrolase subunit 1 Alide_1634 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Alide_1634 PF00364 Biotin-requiring enzyme Alide_1634 PF02785 Biotin carboxylase C-terminal domain Alide_1634 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_1635 PF00005 ABC transporter Alide_1635 PF00664 ABC transporter transmembrane region Alide_1636 PF04052 TolB amino-terminal domain Alide_1636 PF07676 WD40-like Beta Propeller Repeat Alide_1637 PF00691 OmpA family Alide_1638 PF13525 Outer membrane lipoprotein Alide_1638 PF16331 Alide_1638 Alide_1639 PF00899 ThiF family Alide_1640 PF00589 Phage integrase family Alide_1648 PF09588 YqaJ-like viral recombinase domain Alide_1649 PF04404 Alide_1649 Alide_1658 PF13191 AAA ATPase domain Alide_1659 PF00565 Staphylococcal nuclease homologue Alide_1660 PF07589 Alide_1660 Alide_1662 PF00717 Peptidase S24-like Alide_1663 PF01381 Helix-turn-helix Alide_1669 PF00772 DnaB-like helicase N terminal domain Alide_1669 PF03796 DnaB-like helicase C terminal domain Alide_1673 PF07105 Alide_1673 Alide_1680 PF13252 Alide_1680 Alide_1687 PF14213 Alide_1687 Alide_1690 PF02481 DNA recombination-mediator protein A Alide_1703 PF16082 Alide_1703 Alide_1707 PF15919 Alide_1707 Alide_1708 PF07927 YcfA-like protein Alide_1715 PF01609 Transposase DDE domain Alide_1715 PF05598 Alide_1715 Alide_1717 PF07007 Protein of unknown function (DUF1311) Alide_1718 PF01695 IstB-like ATP binding protein Alide_1719 PF00665 Integrase core domain Alide_1720 PF13148 Alide_1720 Alide_1721 PF13362 Toprim domain Alide_1724 PF00589 Phage integrase family Alide_1724 PF13356 Domain of unknown function (DUF4102) Alide_1725 PF09084 NMT1/THI5 like Alide_1726 PF11295 Alide_1726 Alide_1727 PF01464 Transglycosylase SLT domain Alide_1727 PF01476 LysM domain Alide_1728 PF00753 Metallo-beta-lactamase superfamily Alide_1728 PF16123 Alide_1728 Alide_1729 PF08241 Methyltransferase domain Alide_1730 PF00075 RNase H Alide_1731 PF00155 Aminotransferase class I and II Alide_1732 PF03737 Demethylmenaquinone methyltransferase Alide_1733 PF03737 Demethylmenaquinone methyltransferase Alide_1734 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1734 PF03466 LysR substrate binding domain Alide_1735 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_1736 PF03737 Demethylmenaquinone methyltransferase Alide_1737 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1739 PF00085 Thioredoxin Alide_1740 PF00994 Probable molybdopterin binding domain Alide_1740 PF03453 MoeA N-terminal region (domain I and II) Alide_1740 PF03454 MoeA C-terminal region (domain IV) Alide_1741 PF00583 Acetyltransferase (GNAT) family Alide_1742 PF12804 MobA-like NTP transferase domain Alide_1743 PF04055 Radical SAM superfamily Alide_1743 PF06463 Molybdenum Cofactor Synthesis C Alide_1743 PF13353 4Fe-4S single cluster domain Alide_1744 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Alide_1745 PF11136 Alide_1745 Alide_1746 PF00171 Aldehyde dehydrogenase family Alide_1747 PF03030 Inorganic H+ pyrophosphatase Alide_1748 PF00719 Inorganic pyrophosphatase Alide_1749 PF01584 CheW-like domain Alide_1750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_1750 PF00672 HAMP domain Alide_1750 PF12729 Alide_1750 Alide_1751 PF04339 Alide_1751 Alide_1753 PF00795 Carbon-nitrogen hydrolase Alide_1753 PF02540 NAD synthase Alide_1754 PF00543 Nitrogen regulatory protein P-II Alide_1755 PF03641 Possible lysine decarboxylase Alide_1756 PF01219 Prokaryotic diacylglycerol kinase Alide_1757 PF06271 Alide_1757 Alide_1758 PF11304 Alide_1758 Alide_1759 PF12279 Alide_1759 Alide_1760 PF08281 Sigma-70, region 4 Alide_1761 PF00205 Thiamine pyrophosphate enzyme, central domain Alide_1761 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_1761 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide_1762 PF10369 Small subunit of acetolactate synthase Alide_1762 PF13710 ACT domain Alide_1763 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Alide_1763 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain Alide_1764 PF01066 CDP-alcohol phosphatidyltransferase Alide_1765 PF13417 Glutathione S-transferase, N-terminal domain Alide_1766 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_1767 PF07690 Major Facilitator Superfamily Alide_1768 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_1769 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1769 PF03466 LysR substrate binding domain Alide_1770 PF00682 HMGL-like Alide_1770 PF08502 LeuA allosteric (dimerisation) domain Alide_1771 PF00682 HMGL-like Alide_1771 PF08502 LeuA allosteric (dimerisation) domain Alide_1772 PF00768 D-alanyl-D-alanine carboxypeptidase Alide_1773 PF01614 Bacterial transcriptional regulator Alide_1773 PF09339 IclR helix-turn-helix domain Alide_1774 PF00474 Sodium:solute symporter family Alide_1775 PF00171 Aldehyde dehydrogenase family Alide_1775 PF01619 Proline dehydrogenase Alide_1775 PF14850 DNA-binding domain of Proline dehydrogenase Alide_1776 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1776 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1776 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_1777 PF01636 Phosphotransferase enzyme family Alide_1778 PF00027 Cyclic nucleotide-binding domain Alide_1778 PF13545 Crp-like helix-turn-helix domain Alide_1779 PF00378 Enoyl-CoA hydratase/isomerase family Alide_1780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_1780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_1782 PF02581 Thiamine monophosphate synthase/TENI Alide_1783 PF05690 Thiazole biosynthesis protein ThiG Alide_1784 PF02597 ThiS family Alide_1785 PF01266 FAD dependent oxidoreductase Alide_1786 PF08543 Phosphomethylpyrimidine kinase Alide_1787 PF06347 Bacterial SH3 domain Alide_1787 PF08239 Bacterial SH3 domain Alide_1788 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Alide_1789 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_1790 PF00037 4Fe-4S binding domain Alide_1790 PF11953 Domain of unknown function (DUF3470) Alide_1791 PF00009 Elongation factor Tu GTP binding domain Alide_1792 PF01507 Phosphoadenosine phosphosulfate reductase family Alide_1793 PF01507 Phosphoadenosine phosphosulfate reductase family Alide_1794 PF06073 Alide_1794 Alide_1795 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Alide_1795 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Alide_1796 PF01925 Alide_1796 Alide_1797 PF01266 FAD dependent oxidoreductase Alide_1797 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Alide_1798 PF03458 Alide_1798 Alide_1799 PF04362 Bacterial Fe(2+) trafficking Alide_1800 PF13531 Bacterial extracellular solute-binding protein Alide_1804 PF00501 AMP-binding enzyme Alide_1804 PF13193 AMP-binding enzyme C-terminal domain Alide_1805 PF00108 Thiolase, N-terminal domain Alide_1805 PF02803 Thiolase, C-terminal domain Alide_1806 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_1807 PF13458 Periplasmic binding protein Alide_1808 PF02653 Alide_1808 Alide_1809 PF02653 Alide_1809 Alide_1810 PF00005 ABC transporter Alide_1810 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_1811 PF00005 ABC transporter Alide_1812 PF02627 Carboxymuconolactone decarboxylase family Alide_1813 PF00501 AMP-binding enzyme Alide_1813 PF13193 AMP-binding enzyme C-terminal domain Alide_1814 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_1819 PF01464 Transglycosylase SLT domain Alide_1819 PF08238 Sel1 repeat Alide_1820 PF13356 Domain of unknown function (DUF4102) Alide_1821 PF01527 Transposase Alide_1822 PF00665 Integrase core domain Alide_1822 PF13276 Alide_1822 Alide_1826 PF00403 Heavy-metal-associated domain Alide_1826 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_1826 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_1827 PF00403 Heavy-metal-associated domain Alide_1828 PF02411 Alide_1828 Alide_1829 PF00376 MerR family regulatory protein Alide_1829 PF09278 MerR, DNA binding Alide_1830 PF12101 Alide_1830 Alide_1831 PF11679 Alide_1831 Alide_1837 PF00665 Integrase core domain Alide_1837 PF13276 Alide_1837 Alide_1838 PF01527 Transposase Alide_1840 PF00589 Phage integrase family Alide_1840 PF13356 Domain of unknown function (DUF4102) Alide_1841 PF02082 Transcriptional regulator Alide_1844 PF02666 Alide_1844 Alide_1845 PF00571 CBS domain Alide_1845 PF04982 Alide_1845 Alide_1846 PF01176 Translation initiation factor 1A / IF-1 Alide_1847 PF00990 GGDEF domain Alide_1848 PF07786 Alide_1848 Alide_1849 PF00216 Bacterial DNA-binding protein Alide_1850 PF00575 S1 RNA binding domain Alide_1851 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Alide_1851 PF02224 Cytidylate kinase Alide_1852 PF02153 Prephenate dehydrogenase Alide_1853 PF00800 Prephenate dehydratase Alide_1853 PF01817 Chorismate mutase type II Alide_1853 PF01842 ACT domain Alide_1854 PF00266 Aminotransferase class-V Alide_1855 PF00521 DNA gyrase/topoisomerase IV, subunit A Alide_1855 PF03989 DNA gyrase C-terminal domain, beta-propeller Alide_1856 PF00691 OmpA family Alide_1857 PF13489 Methyltransferase domain Alide_1858 PF13419 Haloacid dehalogenase-like hydrolase Alide_1859 PF02586 Uncharacterised ACR, COG2135 Alide_1860 PF00717 Peptidase S24-like Alide_1861 PF00817 impB/mucB/samB family Alide_1861 PF11799 impB/mucB/samB family C-terminal domain Alide_1861 PF13438 Alide_1861 Alide_1864 PF00239 Resolvase, N terminal domain Alide_1864 PF07508 Recombinase Alide_1865 PF11149 Alide_1865 Alide_1867 PF12844 Helix-turn-helix domain Alide_1869 PF02538 Alide_1869 Alide_1871 PF01527 Transposase Alide_1872 PF05717 Alide_1872 Alide_1873 PF03050 Alide_1873 Alide_1873 PF13005 Alide_1873 Alide_1873 PF13007 Alide_1873 Alide_1873 PF13817 Alide_1873 Alide_1874 PF00665 Integrase core domain Alide_1874 PF13276 Alide_1874 Alide_1875 PF01527 Transposase Alide_1877 PF13510 2Fe-2S iron-sulfur cluster binding domain Alide_1878 PF01266 FAD dependent oxidoreductase Alide_1879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1879 PF03466 LysR substrate binding domain Alide_1880 PF04960 Glutaminase Alide_1881 PF01546 Peptidase family M20/M25/M40 Alide_1881 PF07687 Peptidase dimerisation domain Alide_1882 PF00083 Sugar (and other) transporter Alide_1883 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1883 PF03466 LysR substrate binding domain Alide_1885 PF13673 Acetyltransferase (GNAT) domain Alide_1886 PF08681 Protein of unknown function (DUF1778) Alide_1887 PF07690 Major Facilitator Superfamily Alide_1888 PF00106 short chain dehydrogenase Alide_1889 PF03061 Thioesterase superfamily Alide_1890 PF00107 Zinc-binding dehydrogenase Alide_1890 PF16884 Alide_1890 Alide_1891 PF13410 Glutathione S-transferase, C-terminal domain Alide_1891 PF13417 Glutathione S-transferase, N-terminal domain Alide_1892 PF07603 Alide_1892 Alide_1893 PF07690 Major Facilitator Superfamily Alide_1894 PF00875 DNA photolyase Alide_1894 PF03441 FAD binding domain of DNA photolyase Alide_1895 PF05425 Alide_1895 Alide_1896 PF01717 Cobalamin-independent synthase, Catalytic domain Alide_1896 PF08267 Cobalamin-independent synthase, N-terminal domain Alide_1897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1897 PF03466 LysR substrate binding domain Alide_1900 PF11454 Alide_1900 Alide_1901 PF13714 Phosphoenolpyruvate phosphomutase Alide_1902 PF04303 PrpF protein Alide_1903 PF00330 Aconitase family (aconitate hydratase) Alide_1903 PF00694 Aconitase C-terminal domain Alide_1904 PF00285 Citrate synthase Alide_1905 PF03061 Thioesterase superfamily Alide_1906 PF01381 Helix-turn-helix Alide_1906 PF06114 Domain of unknown function (DUF955) Alide_1906 PF09856 Alide_1906 Alide_1907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1907 PF03466 LysR substrate binding domain Alide_1908 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_1910 PF01479 S4 domain Alide_1911 PF00512 His Kinase A (phospho-acceptor) domain Alide_1911 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1911 PF08521 Alide_1911 Alide_1912 PF00072 Response regulator receiver domain Alide_1912 PF00486 Transcriptional regulatory protein, C terminal Alide_1913 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1914 PF07331 Alide_1914 Alide_1915 PF01970 Alide_1915 Alide_1916 PF10605 Alide_1916 Alide_1917 PF04366 Alide_1917 Alide_1919 PF04143 Alide_1919 Alide_1920 PF00581 Rhodanese-like domain Alide_1921 PF00762 Ferrochelatase Alide_1922 PF13419 Haloacid dehalogenase-like hydrolase Alide_1923 PF00122 E1-E2 ATPase Alide_1923 PF00689 Cation transporting ATPase, C-terminus Alide_1923 PF00690 Cation transporter/ATPase, N-terminus Alide_1923 PF00702 haloacid dehalogenase-like hydrolase Alide_1924 PF12697 Alpha/beta hydrolase family Alide_1925 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide_1926 PF00571 CBS domain Alide_1927 PF01264 Chorismate synthase Alide_1928 PF03477 ATP cone domain Alide_1929 PF00464 Serine hydroxymethyltransferase Alide_1930 PF01464 Transglycosylase SLT domain Alide_1931 PF00691 OmpA family Alide_1931 PF05359 Alide_1931 Alide_1932 PF03993 Alide_1932 Alide_1933 PF00575 S1 RNA binding domain Alide_1933 PF00773 RNB domain Alide_1933 PF08206 Ribonuclease B OB domain Alide_1934 PF00106 short chain dehydrogenase Alide_1935 PF00034 Cytochrome c Alide_1936 PF00034 Cytochrome c Alide_1936 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_1937 PF00085 Thioredoxin Alide_1938 PF02576 Uncharacterised BCR, YhbC family COG0779 Alide_1939 PF00575 S1 RNA binding domain Alide_1939 PF08529 NusA N-terminal domain Alide_1939 PF13184 NusA-like KH domain Alide_1939 PF14520 Helix-hairpin-helix domain Alide_1940 PF00009 Elongation factor Tu GTP binding domain Alide_1940 PF04760 Translation initiation factor IF-2, N-terminal region Alide_1940 PF08364 Alide_1940 Alide_1940 PF11987 Translation-initiation factor 2 Alide_1941 PF02033 Ribosome-binding factor A Alide_1942 PF01509 TruB family pseudouridylate synthase (N terminal domain) Alide_1942 PF09157 Pseudouridine synthase II TruB, C-terminal Alide_1942 PF16198 Alide_1942 Alide_1943 PF00009 Elongation factor Tu GTP binding domain Alide_1943 PF00679 Elongation factor G C-terminus Alide_1943 PF03144 Elongation factor Tu domain 2 Alide_1944 PF04072 Leucine carboxyl methyltransferase Alide_1945 PF16113 Alide_1945 Alide_1947 PF04542 Sigma-70 region 2 Alide_1947 PF08281 Sigma-70, region 4 Alide_1948 PF03640 Alide_1948 Alide_1949 PF01668 SmpB protein Alide_1950 PF03364 Polyketide cyclase / dehydrase and lipid transport Alide_1951 PF03658 RnfH family Ubiquitin Alide_1952 PF13511 Alide_1952 Alide_1953 PF00478 IMP dehydrogenase / GMP reductase domain Alide_1953 PF00571 CBS domain Alide_1954 PF00117 Glutamine amidotransferase class-I Alide_1954 PF00958 GMP synthase C terminal domain Alide_1954 PF02540 NAD synthase Alide_1955 PF00589 Phage integrase family Alide_1955 PF13356 Domain of unknown function (DUF4102) Alide_1955 PF14659 Phage integrase, N-terminal SAM-like domain Alide_1956 PF00285 Citrate synthase Alide_1957 PF03937 Flavinator of succinate dehydrogenase Alide_1958 PF13085 2Fe-2S iron-sulfur cluster binding domain Alide_1958 PF13534 4Fe-4S dicluster domain Alide_1959 PF00890 FAD binding domain Alide_1959 PF02910 Fumarate reductase flavoprotein C-term Alide_1960 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Alide_1961 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Alide_1962 PF00392 Bacterial regulatory proteins, gntR family Alide_1962 PF07702 UTRA domain Alide_1963 PF00056 lactate/malate dehydrogenase, NAD binding domain Alide_1963 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Alide_1964 PF13649 Methyltransferase domain Alide_1966 PF00330 Aconitase family (aconitate hydratase) Alide_1966 PF06434 Aconitate hydratase 2 N-terminus Alide_1966 PF11791 Aconitate B N-terminal domain Alide_1967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1967 PF03466 LysR substrate binding domain Alide_1968 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_1968 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_1969 PF03401 Tripartite tricarboxylate transporter family receptor Alide_1970 PF02515 CoA-transferase family III Alide_1971 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_1971 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_1972 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_1972 PF01799 [2Fe-2S] binding domain Alide_1973 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide_1973 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alide_1974 PF00941 FAD binding domain in molybdopterin dehydrogenase Alide_1975 PF07728 AAA domain (dynein-related subfamily) Alide_1976 PF05762 VWA domain containing CoxE-like protein Alide_1977 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) Alide_1978 PF02625 XdhC and CoxI family Alide_1978 PF13478 XdhC Rossmann domain Alide_1979 PF12804 MobA-like NTP transferase domain Alide_1982 PF01593 Flavin containing amine oxidoreductase Alide_1983 PF03706 Alide_1983 Alide_1984 PF00535 Glycosyl transferase family 2 Alide_1985 PF01136 Alide_1985 Alide_1985 PF16325 Alide_1985 Alide_1987 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_1987 PF03466 LysR substrate binding domain Alide_1988 PF01925 Alide_1988 Alide_1989 PF00072 Response regulator receiver domain Alide_1989 PF02954 Bacterial regulatory protein, Fis family Alide_1990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_1991 PF02104 Alide_1991 Alide_1992 PF03626 Alide_1992 Alide_1993 PF00510 Cytochrome c oxidase subunit III Alide_1994 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_1995 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Alide_1995 PF06481 COX Aromatic Rich Motif Alide_1996 PF07690 Major Facilitator Superfamily Alide_1997 PF13103 TonB C terminal Alide_1998 PF02472 Biopolymer transport protein ExbD/TolR Alide_1999 PF01618 Alide_1999 Alide_2000 PF03061 Thioesterase superfamily Alide_2001 PF00155 Aminotransferase class I and II Alide_2002 PF01029 NusB family Alide_2003 PF00885 6,7-dimethyl-8-ribityllumazine synthase Alide_2004 PF00925 GTP cyclohydrolase II Alide_2004 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Alide_2005 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_2007 PF00106 short chain dehydrogenase Alide_2008 PF04262 Glutamate-cysteine ligase Alide_2009 PF12805 Alide_2009 Alide_2009 PF13515 Alide_2009 Alide_2011 PF01042 Endoribonuclease L-PSP Alide_2012 PF04324 BFD-like [2Fe-2S] binding domain Alide_2012 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2013 PF13510 2Fe-2S iron-sulfur cluster binding domain Alide_2014 PF01266 FAD dependent oxidoreductase Alide_2015 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2016 PF03466 LysR substrate binding domain Alide_2017 PF01926 50S ribosome-binding GTPase Alide_2019 PF00849 RNA pseudouridylate synthase Alide_2021 PF02272 DHHA1 domain Alide_2022 PF05977 Transmembrane secretion effector Alide_2023 PF00565 Staphylococcal nuclease homologue Alide_2024 PF00892 EamA-like transporter family Alide_2025 PF00849 RNA pseudouridylate synthase Alide_2026 PF01551 Peptidase family M23 Alide_2027 PF00206 Lyase Alide_2027 PF10415 Fumarase C C-terminus Alide_2028 PF03724 META domain Alide_2028 PF14302 Alide_2028 Alide_2029 PF06041 Bacterial protein of unknown function (DUF924) Alide_2030 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alide_2030 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Alide_2032 PF01220 Dehydroquinase class II Alide_2033 PF12697 Alpha/beta hydrolase family Alide_2034 PF00472 RF-1 domain Alide_2035 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Alide_2036 PF02230 Phospholipase/Carboxylesterase Alide_2037 PF11219 Alide_2037 Alide_2038 PF01037 AsnC family Alide_2038 PF13412 Winged helix-turn-helix DNA-binding Alide_2039 PF00456 Transketolase, thiamine diphosphate binding domain Alide_2040 PF01425 Amidase Alide_2041 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2042 PF08765 Mor transcription activator family Alide_2043 PF06252 Alide_2043 Alide_2044 PF00216 Bacterial DNA-binding protein Alide_2047 PF10800 Alide_2047 Alide_2055 PF13401 AAA domain Alide_2056 PF00665 Integrase core domain Alide_2065 PF07022 Bacteriophage CI repressor helix-turn-helix domain Alide_2068 PF13272 Alide_2068 Alide_2069 PF01464 Transglycosylase SLT domain Alide_2072 PF01258 Prokaryotic dksA/traR C4-type zinc finger Alide_2073 PF10805 Alide_2073 Alide_2075 PF11985 Alide_2075 Alide_2077 PF03237 Terminase-like family Alide_2077 PF17289 Alide_2077 Alide_2078 PF06074 Alide_2078 Alide_2079 PF04233 Alide_2079 Alide_2080 PF05069 Alide_2080 Alide_2081 PF10123 Alide_2081 Alide_2083 PF10124 Alide_2083 Alide_2085 PF07030 Alide_2085 Alide_2090 PF08809 Alide_2090 Alide_2091 PF06791 Alide_2091 Alide_2101 PF01609 Transposase DDE domain Alide_2101 PF05598 Alide_2101 Alide_2103 PF14301 Alide_2103 Alide_2104 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2105 PF03466 LysR substrate binding domain Alide_2106 PF00392 Bacterial regulatory proteins, gntR family Alide_2106 PF07729 FCD domain Alide_2107 PF07690 Major Facilitator Superfamily Alide_2108 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_2108 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_2109 PF01370 NAD dependent epimerase/dehydratase family Alide_2110 PF07005 Protein of unknown function, DUF1537 Alide_2110 PF17042 Alide_2110 Alide_2111 PF00596 Class II Aldolase and Adducin N-terminal domain Alide_2112 PF01261 Xylose isomerase-like TIM barrel Alide_2113 PF06167 Glucose-regulated metallo-peptidase M90 Alide_2114 PF00149 Calcineurin-like phosphoesterase Alide_2115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alide_2116 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alide_2117 PF03734 L,D-transpeptidase catalytic domain Alide_2118 PF13414 TPR repeat Alide_2118 PF13432 Tetratricopeptide repeat Alide_2119 PF01406 tRNA synthetases class I (C) catalytic domain Alide_2119 PF09190 DALR domain Alide_2120 PF00730 HhH-GPD superfamily base excision DNA repair protein Alide_2121 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Alide_2122 PF01171 PP-loop family Alide_2122 PF09179 TilS substrate binding domain Alide_2123 PF00696 Amino acid kinase family Alide_2123 PF01842 ACT domain Alide_2123 PF13840 ACT domain Alide_2124 PF00654 Voltage gated chloride channel Alide_2126 PF00665 Integrase core domain Alide_2126 PF13276 Alide_2126 Alide_2127 PF01527 Transposase Alide_2128 PF16576 Alide_2128 Alide_2129 PF02687 Alide_2129 Alide_2129 PF12704 MacB-like periplasmic core domain Alide_2130 PF00005 ABC transporter Alide_2131 PF01471 Putative peptidoglycan binding domain Alide_2131 PF13406 Transglycosylase SLT domain Alide_2132 PF00929 Exonuclease Alide_2132 PF08411 Exonuclease C-terminal Alide_2133 PF02146 Sir2 family Alide_2134 PF01594 Alide_2134 Alide_2134 PF13185 GAF domain Alide_2135 PF13302 Acetyltransferase (GNAT) domain Alide_2136 PF14681 Uracil phosphoribosyltransferase Alide_2137 PF00291 Pyridoxal-phosphate dependent enzyme Alide_2138 PF01709 Transcriptional regulator Alide_2140 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Alide_2140 PF12801 Alide_2140 Alide_2140 PF13746 4Fe-4S dicluster domain Alide_2141 PF01654 Alide_2141 Alide_2142 PF02322 Alide_2142 Alide_2143 PF10617 Alide_2143 Alide_2144 PF04172 Alide_2144 Alide_2145 PF03788 Alide_2145 Alide_2146 PF00155 Aminotransferase class I and II Alide_2146 PF00392 Bacterial regulatory proteins, gntR family Alide_2147 PF00043 Glutathione S-transferase, C-terminal domain Alide_2147 PF02798 Glutathione S-transferase, N-terminal domain Alide_2148 PF05872 Alide_2148 Alide_2149 PF01709 Transcriptional regulator Alide_2150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Alide_2150 PF02843 Phosphoribosylglycinamide synthetase, C domain Alide_2150 PF02844 Phosphoribosylglycinamide synthetase, N domain Alide_2151 PF01218 Coproporphyrinogen III oxidase Alide_2152 PF02410 Oligomerisation domain Alide_2153 PF02590 Predicted SPOUT methyltransferase Alide_2154 PF02545 Maf-like protein Alide_2155 PF00027 Cyclic nucleotide-binding domain Alide_2155 PF13545 Crp-like helix-turn-helix domain Alide_2156 PF02239 Cytochrome D1 heme domain Alide_2156 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_2157 PF04055 Radical SAM superfamily Alide_2157 PF13353 4Fe-4S single cluster domain Alide_2160 PF02239 Cytochrome D1 heme domain Alide_2161 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_2162 PF02239 Cytochrome D1 heme domain Alide_2162 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_2163 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide_2164 PF10150 Ribonuclease E/G family Alide_2165 PF00990 GGDEF domain Alide_2167 PF00155 Aminotransferase class I and II Alide_2168 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2168 PF03466 LysR substrate binding domain Alide_2169 PF01903 CbiX Alide_2170 PF03739 Alide_2170 Alide_2171 PF03739 Alide_2171 Alide_2172 PF00883 Cytosol aminopeptidase family, catalytic domain Alide_2172 PF02789 Cytosol aminopeptidase family, N-terminal domain Alide_2173 PF04364 DNA polymerase III chi subunit, HolC Alide_2175 PF13458 Periplasmic binding protein Alide_2176 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_2176 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_2181 PF10014 2OG-Fe dioxygenase Alide_2182 PF00582 Universal stress protein family Alide_2183 PF01814 Hemerythrin HHE cation binding domain Alide_2184 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2185 PF00108 Thiolase, N-terminal domain Alide_2185 PF02803 Thiolase, C-terminal domain Alide_2186 PF00106 short chain dehydrogenase Alide_2187 PF00849 RNA pseudouridylate synthase Alide_2188 PF00072 Response regulator receiver domain Alide_2188 PF00512 His Kinase A (phospho-acceptor) domain Alide_2188 PF00989 PAS fold Alide_2188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2188 PF13188 PAS domain Alide_2189 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide_2190 PF00072 Response regulator receiver domain Alide_2190 PF00196 Bacterial regulatory proteins, luxR family Alide_2191 PF07730 Histidine kinase Alide_2193 PF08534 Redoxin Alide_2194 PF13563 2'-5' RNA ligase superfamily Alide_2196 PF13801 Heavy-metal resistance Alide_2197 PF13490 Putative zinc-finger Alide_2198 PF04542 Sigma-70 region 2 Alide_2198 PF08281 Sigma-70, region 4 Alide_2200 PF05958 tRNA (Uracil-5-)-methyltransferase Alide_2201 PF00291 Pyridoxal-phosphate dependent enzyme Alide_2202 PF01205 Uncharacterized protein family UPF0029 Alide_2202 PF09186 Domain of unknown function (DUF1949) Alide_2203 PF00127 Copper binding proteins, plastocyanin/azurin family Alide_2204 PF04055 Radical SAM superfamily Alide_2204 PF08497 Alide_2204 Alide_2204 PF11842 Alide_2204 Alide_2205 PF00155 Aminotransferase class I and II Alide_2206 PF00271 Helicase conserved C-terminal domain Alide_2206 PF02151 UvrB/uvrC motif Alide_2206 PF04851 Type III restriction enzyme, res subunit Alide_2206 PF12344 Ultra-violet resistance protein B Alide_2207 PF02082 Transcriptional regulator Alide_2208 PF00266 Aminotransferase class-V Alide_2209 PF01592 NifU-like N terminal domain Alide_2210 PF01521 Iron-sulphur cluster biosynthesis Alide_2211 PF07743 HSCB C-terminal oligomerisation domain Alide_2212 PF00012 Hsp70 protein Alide_2213 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_2214 PF00929 Exonuclease Alide_2215 PF01266 FAD dependent oxidoreductase Alide_2216 PF05957 Alide_2216 Alide_2217 PF07332 Alide_2217 Alide_2219 PF01180 Dihydroorotate dehydrogenase Alide_2220 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Alide_2221 PF00462 Glutaredoxin Alide_2221 PF13511 Alide_2221 Alide_2222 PF01432 Peptidase family M3 Alide_2223 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Alide_2223 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Alide_2224 PF00072 Response regulator receiver domain Alide_2224 PF00196 Bacterial regulatory proteins, luxR family Alide_2225 PF00512 His Kinase A (phospho-acceptor) domain Alide_2225 PF00989 PAS fold Alide_2225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2226 PF00456 Transketolase, thiamine diphosphate binding domain Alide_2227 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_2227 PF00364 Biotin-requiring enzyme Alide_2227 PF02817 e3 binding domain Alide_2228 PF00364 Biotin-requiring enzyme Alide_2228 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_2228 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2231 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2232 PF02661 Fic/DOC family Alide_2233 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2233 PF03466 LysR substrate binding domain Alide_2234 PF03737 Demethylmenaquinone methyltransferase Alide_2235 PF03972 MmgE/PrpD family Alide_2236 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2237 PF10672 S-adenosylmethionine-dependent methyltransferase Alide_2239 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_2239 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_2241 PF01878 EVE domain Alide_2242 PF04226 Alide_2242 Alide_2243 PF00877 NlpC/P60 family Alide_2244 PF00324 Amino acid permease Alide_2246 PF07690 Major Facilitator Superfamily Alide_2247 PF00563 EAL domain Alide_2247 PF00990 GGDEF domain Alide_2247 PF03924 CHASE domain Alide_2247 PF13426 PAS domain Alide_2248 PF02694 Alide_2248 Alide_2249 PF07589 Alide_2249 Alide_2250 PF02463 RecF/RecN/SMC N terminal domain Alide_2250 PF06470 SMC proteins Flexible Hinge Domain Alide_2252 PF00533 BRCA1 C Terminus (BRCT) domain Alide_2252 PF01653 NAD-dependent DNA ligase adenylation domain Alide_2252 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Alide_2252 PF03120 NAD-dependent DNA ligase OB-fold domain Alide_2252 PF12826 Helix-hairpin-helix motif Alide_2252 PF14520 Helix-hairpin-helix domain Alide_2253 PF01734 Patatin-like phospholipase Alide_2254 PF00905 Penicillin binding protein transpeptidase domain Alide_2254 PF00912 Transglycosylase Alide_2255 PF07690 Major Facilitator Superfamily Alide_2256 PF00293 NUDIX domain Alide_2256 PF14803 Nudix N-terminal Alide_2257 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_2258 PF13417 Glutathione S-transferase, N-terminal domain Alide_2259 PF02578 Multi-copper polyphenol oxidoreductase laccase Alide_2261 PF07167 Alide_2261 Alide_2262 PF00108 Thiolase, N-terminal domain Alide_2262 PF02803 Thiolase, C-terminal domain Alide_2263 PF00106 short chain dehydrogenase Alide_2264 PF00005 ABC transporter Alide_2264 PF12848 ABC transporter Alide_2265 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2266 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2266 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2266 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2267 PF00501 AMP-binding enzyme Alide_2267 PF13193 AMP-binding enzyme C-terminal domain Alide_2268 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2268 PF03466 LysR substrate binding domain Alide_2269 PF05175 Methyltransferase small domain Alide_2270 PF01546 Peptidase family M20/M25/M40 Alide_2270 PF07687 Peptidase dimerisation domain Alide_2271 PF00437 Type II/IV secretion system protein Alide_2272 PF14602 Hexapeptide repeat of succinyl-transferase Alide_2272 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Alide_2273 PF00155 Aminotransferase class I and II Alide_2274 PF04060 Putative Fe-S cluster Alide_2274 PF14697 4Fe-4S dicluster domain Alide_2275 PF06850 Alide_2275 Alide_2276 PF04607 Region found in RelA / SpoT proteins Alide_2277 PF01207 Dihydrouridine synthase (Dus) Alide_2278 PF01575 MaoC like domain Alide_2279 PF00440 Bacterial regulatory proteins, tetR family Alide_2280 PF03435 Saccharopine dehydrogenase Alide_2280 PF16653 Alide_2280 Alide_2281 PF00501 AMP-binding enzyme Alide_2282 PF00392 Bacterial regulatory proteins, gntR family Alide_2282 PF07729 FCD domain Alide_2283 PF00682 HMGL-like Alide_2284 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2285 PF02515 CoA-transferase family III Alide_2286 PF01381 Helix-turn-helix Alide_2286 PF06114 Domain of unknown function (DUF955) Alide_2286 PF09856 Alide_2286 Alide_2287 PF01642 Methylmalonyl-CoA mutase Alide_2287 PF02310 B12 binding domain Alide_2288 PF03308 ArgK protein Alide_2289 PF01039 Carboxyl transferase domain Alide_2290 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Alide_2290 PF00364 Biotin-requiring enzyme Alide_2290 PF02785 Biotin carboxylase C-terminal domain Alide_2290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_2291 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_2292 PF04055 Radical SAM superfamily Alide_2292 PF06968 Biotin and Thiamin Synthesis associated domain Alide_2293 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2294 PF00072 Response regulator receiver domain Alide_2294 PF00486 Transcriptional regulatory protein, C terminal Alide_2295 PF00512 His Kinase A (phospho-acceptor) domain Alide_2295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2295 PF08521 Alide_2295 Alide_2296 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2297 PF02566 OsmC-like protein Alide_2298 PF00581 Rhodanese-like domain Alide_2299 PF11127 Protein of unknown function (DUF2892) Alide_2300 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2301 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2302 PF02321 Outer membrane efflux protein Alide_2303 PF00873 AcrB/AcrD/AcrF family Alide_2304 PF16576 Alide_2304 Alide_2305 PF01022 Bacterial regulatory protein, arsR family Alide_2307 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_2308 PF03737 Demethylmenaquinone methyltransferase Alide_2309 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2310 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2311 PF00356 Bacterial regulatory proteins, lacI family Alide_2311 PF13377 Periplasmic binding protein-like domain Alide_2312 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_2313 PF00815 Histidinol dehydrogenase Alide_2314 PF08242 Methyltransferase domain Alide_2315 PF03942 Alide_2315 Alide_2316 PF02627 Carboxymuconolactone decarboxylase family Alide_2317 PF00884 Sulfatase Alide_2317 PF08019 Alide_2317 Alide_2318 PF01569 PAP2 superfamily Alide_2319 PF00072 Response regulator receiver domain Alide_2319 PF00486 Transcriptional regulatory protein, C terminal Alide_2320 PF00512 His Kinase A (phospho-acceptor) domain Alide_2320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2321 PF00378 Enoyl-CoA hydratase/isomerase family Alide_2322 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2323 PF00107 Zinc-binding dehydrogenase Alide_2323 PF08240 Alcohol dehydrogenase GroES-like domain Alide_2324 PF02515 CoA-transferase family III Alide_2325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2325 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2327 PF02515 CoA-transferase family III Alide_2328 PF00440 Bacterial regulatory proteins, tetR family Alide_2329 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase Alide_2329 PF13450 NAD(P)-binding Rossmann-like domain Alide_2330 PF04392 ABC transporter substrate binding protein Alide_2331 PF02653 Alide_2331 Alide_2332 PF00005 ABC transporter Alide_2333 PF00158 Sigma-54 interaction domain Alide_2333 PF01590 GAF domain Alide_2333 PF02954 Bacterial regulatory protein, Fis family Alide_2334 PF12697 Alpha/beta hydrolase family Alide_2335 PF00732 GMC oxidoreductase Alide_2335 PF05199 GMC oxidoreductase Alide_2338 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_2339 PF00364 Biotin-requiring enzyme Alide_2340 PF02779 Transketolase, pyrimidine binding domain Alide_2340 PF02780 Transketolase, C-terminal domain Alide_2341 PF00676 Dehydrogenase E1 component Alide_2342 PF01037 AsnC family Alide_2342 PF13404 AsnC-type helix-turn-helix domain Alide_2343 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_2344 PF04290 Alide_2344 Alide_2345 PF06808 Alide_2345 Alide_2346 PF00753 Metallo-beta-lactamase superfamily Alide_2347 PF01571 Aminomethyltransferase folate-binding domain Alide_2347 PF08669 Glycine cleavage T-protein C-terminal barrel domain Alide_2348 PF01597 Glycine cleavage H-protein Alide_2349 PF02347 Glycine cleavage system P-protein Alide_2350 PF02583 Metal-sensitive transcriptional repressor Alide_2351 PF00107 Zinc-binding dehydrogenase Alide_2351 PF08240 Alcohol dehydrogenase GroES-like domain Alide_2352 PF00756 Putative esterase Alide_2354 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2354 PF03466 LysR substrate binding domain Alide_2355 PF04055 Radical SAM superfamily Alide_2356 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide_2356 PF14760 Rnk N-terminus Alide_2357 PF01757 Alide_2357 Alide_2358 PF03060 Nitronate monooxygenase Alide_2359 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2359 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2359 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2359 PF12418 Alide_2359 Alide_2359 PF12806 Alide_2359 Alide_2360 PF00766 Electron transfer flavoprotein FAD-binding domain Alide_2360 PF01012 Electron transfer flavoprotein domain Alide_2361 PF01012 Electron transfer flavoprotein domain Alide_2362 PF00378 Enoyl-CoA hydratase/isomerase family Alide_2363 PF00850 Histone deacetylase domain Alide_2364 PF07726 ATPase family associated with various cellular activities (AAA) Alide_2365 PF01882 Alide_2365 Alide_2366 PF01841 Transglutaminase-like superfamily Alide_2366 PF11992 Alide_2366 Alide_2367 PF13406 Transglycosylase SLT domain Alide_2368 PF02779 Transketolase, pyrimidine binding domain Alide_2368 PF02780 Transketolase, C-terminal domain Alide_2369 PF00456 Transketolase, thiamine diphosphate binding domain Alide_2370 PF06808 Alide_2370 Alide_2371 PF04290 Alide_2371 Alide_2372 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_2373 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_2374 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2374 PF03466 LysR substrate binding domain Alide_2375 PF00456 Transketolase, thiamine diphosphate binding domain Alide_2375 PF02779 Transketolase, pyrimidine binding domain Alide_2375 PF02780 Transketolase, C-terminal domain Alide_2376 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_2376 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_2377 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2377 PF03466 LysR substrate binding domain Alide_2378 PF03601 Alide_2378 Alide_2379 PF13458 Periplasmic binding protein Alide_2380 PF10001 Alide_2380 Alide_2381 PF02687 Alide_2381 Alide_2381 PF12704 MacB-like periplasmic core domain Alide_2382 PF00005 ABC transporter Alide_2383 PF16576 Alide_2383 Alide_2384 PF02321 Outer membrane efflux protein Alide_2385 PF00814 Glycoprotease family Alide_2386 PF00571 CBS domain Alide_2387 PF06078 Bacterial protein of unknown function (DUF937) Alide_2388 PF13533 Biotin-lipoyl like Alide_2389 PF00873 AcrB/AcrD/AcrF family Alide_2390 PF02321 Outer membrane efflux protein Alide_2391 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Alide_2391 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Alide_2391 PF04324 BFD-like [2Fe-2S] binding domain Alide_2391 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2392 PF00355 Rieske [2Fe-2S] domain Alide_2393 PF00384 Molybdopterin oxidoreductase Alide_2393 PF01568 Molydopterin dinucleotide binding domain Alide_2393 PF04324 BFD-like [2Fe-2S] binding domain Alide_2393 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide_2394 PF07690 Major Facilitator Superfamily Alide_2395 PF09335 Alide_2395 Alide_2396 PF02885 Glycosyl transferase family, helical bundle domain Alide_2397 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide_2398 PF03061 Thioesterase superfamily Alide_2399 PF03486 HI0933-like protein Alide_2400 PF05940 Alide_2400 Alide_2401 PF10006 Alide_2401 Alide_2402 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2403 PF00501 AMP-binding enzyme Alide_2403 PF13193 AMP-binding enzyme C-terminal domain Alide_2404 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2404 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2404 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2405 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2406 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_2406 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2407 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_2407 PF00364 Biotin-requiring enzyme Alide_2407 PF02817 e3 binding domain Alide_2408 PF00378 Enoyl-CoA hydratase/isomerase family Alide_2409 PF02779 Transketolase, pyrimidine binding domain Alide_2409 PF02780 Transketolase, C-terminal domain Alide_2410 PF00676 Dehydrogenase E1 component Alide_2411 PF01575 MaoC like domain Alide_2413 PF01796 Alide_2413 Alide_2413 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) Alide_2414 PF00108 Thiolase, N-terminal domain Alide_2415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2415 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2416 PF13380 CoA binding domain Alide_2416 PF13549 ATP-grasp domain Alide_2416 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_2417 PF01614 Bacterial transcriptional regulator Alide_2417 PF09339 IclR helix-turn-helix domain Alide_2418 PF01883 Domain of unknown function DUF59 Alide_2419 PF01592 NifU-like N terminal domain Alide_2420 PF00266 Aminotransferase class-V Alide_2421 PF01458 Uncharacterized protein family (UPF0051) Alide_2422 PF00005 ABC transporter Alide_2423 PF01458 Uncharacterized protein family (UPF0051) Alide_2424 PF01165 Ribosomal protein S21 Alide_2425 PF09424 Yqey-like protein Alide_2426 PF13487 HD domain Alide_2427 PF01144 Coenzyme A transferase Alide_2428 PF01144 Coenzyme A transferase Alide_2429 PF00196 Bacterial regulatory proteins, luxR family Alide_2429 PF13426 PAS domain Alide_2430 PF01757 Alide_2430 Alide_2431 PF00583 Acetyltransferase (GNAT) family Alide_2431 PF00696 Amino acid kinase family Alide_2432 PF01042 Endoribonuclease L-PSP Alide_2433 PF01266 FAD dependent oxidoreductase Alide_2434 PF01177 Asp/Glu/Hydantoin racemase Alide_2435 PF13458 Periplasmic binding protein Alide_2436 PF02653 Alide_2436 Alide_2437 PF02653 Alide_2437 Alide_2438 PF00005 ABC transporter Alide_2439 PF00005 ABC transporter Alide_2440 PF13458 Periplasmic binding protein Alide_2441 PF00701 Dihydrodipicolinate synthetase family Alide_2442 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Alide_2442 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_2443 PF00392 Bacterial regulatory proteins, gntR family Alide_2443 PF07729 FCD domain Alide_2444 PF01590 GAF domain Alide_2444 PF01966 HD domain Alide_2444 PF13487 HD domain Alide_2445 PF02600 Disulfide bond formation protein DsbB Alide_2446 PF00005 ABC transporter Alide_2446 PF12857 Alide_2446 Alide_2447 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2448 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2449 PF13531 Bacterial extracellular solute-binding protein Alide_2450 PF06821 Serine hydrolase Alide_2451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2451 PF03466 LysR substrate binding domain Alide_2452 PF02525 Flavodoxin-like fold Alide_2453 PF03358 NADPH-dependent FMN reductase Alide_2454 PF03180 NLPA lipoprotein Alide_2455 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2456 PF00005 ABC transporter Alide_2456 PF09383 NIL domain Alide_2457 PF01124 MAPEG family Alide_2458 PF02132 RecR protein Alide_2458 PF13662 Toprim domain Alide_2459 PF02575 YbaB/EbfC DNA-binding family Alide_2460 PF12169 DNA polymerase III subunits gamma and tau domain III Alide_2460 PF12170 DNA polymerase III tau subunit V interacting with alpha Alide_2460 PF13177 DNA polymerase III, delta subunit Alide_2461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2461 PF03459 TOBE domain Alide_2462 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Alide_2462 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Alide_2463 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2464 PF13531 Bacterial extracellular solute-binding protein Alide_2466 PF01609 Transposase DDE domain Alide_2466 PF05598 Alide_2466 Alide_2467 PF13649 Methyltransferase domain Alide_2468 PF00005 ABC transporter Alide_2469 PF01032 FecCD transport family Alide_2470 PF01497 Periplasmic binding protein Alide_2471 PF10649 Alide_2471 Alide_2472 PF00593 TonB dependent receptor Alide_2472 PF07715 TonB-dependent Receptor Plug Domain Alide_2474 PF03486 HI0933-like protein Alide_2475 PF02678 Pirin Alide_2475 PF05726 Pirin C-terminal cupin domain Alide_2476 PF02678 Pirin Alide_2476 PF05726 Pirin C-terminal cupin domain Alide_2477 PF00580 UvrD/REP helicase N-terminal domain Alide_2477 PF12705 PD-(D/E)XK nuclease superfamily Alide_2477 PF13361 UvrD-like helicase C-terminal domain Alide_2478 PF12705 PD-(D/E)XK nuclease superfamily Alide_2479 PF00085 Thioredoxin Alide_2480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide_2480 PF07497 Rho termination factor, RNA-binding domain Alide_2480 PF07498 Rho termination factor, N-terminal domain Alide_2481 PF01197 Ribosomal protein L31 Alide_2483 PF01554 MatE Alide_2484 PF00512 His Kinase A (phospho-acceptor) domain Alide_2484 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2484 PF11808 Alide_2484 Alide_2484 PF13188 PAS domain Alide_2485 PF00072 Response regulator receiver domain Alide_2485 PF00486 Transcriptional regulatory protein, C terminal Alide_2486 PF01895 PhoU domain Alide_2487 PF00005 ABC transporter Alide_2488 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2489 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2490 PF12849 PBP superfamily domain Alide_2491 PF02541 Ppx/GppA phosphatase family Alide_2492 PF00300 Histidine phosphatase superfamily (branch 1) Alide_2493 PF02503 Polyphosphate kinase middle domain Alide_2493 PF13089 Polyphosphate kinase N-terminal domain Alide_2493 PF13090 Polyphosphate kinase C-terminal domain Alide_2494 PF13444 Acetyltransferase (GNAT) domain Alide_2495 PF00563 EAL domain Alide_2495 PF00990 GGDEF domain Alide_2495 PF13426 PAS domain Alide_2496 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alide_2496 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Alide_2496 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Alide_2496 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Alide_2497 PF00809 Pterin binding enzyme Alide_2498 PF00004 ATPase family associated with various cellular activities (AAA) Alide_2498 PF01434 Peptidase family M41 Alide_2498 PF06480 FtsH Extracellular Alide_2499 PF01728 FtsJ-like methyltransferase Alide_2500 PF01985 CRS1 / YhbY (CRM) domain Alide_2502 PF13664 Alide_2502 Alide_2503 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide_2503 PF03449 Transcription elongation factor, N-terminal Alide_2504 PF02142 MGS-like domain Alide_2504 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_2504 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Alide_2505 PF00117 Glutamine amidotransferase class-I Alide_2505 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Alide_2506 PF13411 MerR HTH family regulatory protein Alide_2507 PF00216 Bacterial DNA-binding protein Alide_2508 PF01588 Putative tRNA binding domain Alide_2508 PF03147 Ferredoxin-fold anticodon binding domain Alide_2508 PF03483 B3/4 domain Alide_2508 PF03484 tRNA synthetase B5 domain Alide_2509 PF01409 tRNA synthetases class II core domain (F) Alide_2509 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Alide_2510 PF00453 Ribosomal protein L20 Alide_2511 PF01632 Ribosomal protein L35 Alide_2512 PF00707 Translation initiation factor IF-3, C-terminal domain Alide_2512 PF05198 Translation initiation factor IF-3, N-terminal domain Alide_2513 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alide_2513 PF02824 TGS domain Alide_2513 PF03129 Anticodon binding domain Alide_2513 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Alide_2514 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide_2514 PF13302 Acetyltransferase (GNAT) domain Alide_2514 PF14760 Rnk N-terminus Alide_2516 PF00463 Isocitrate lyase family Alide_2517 PF00892 EamA-like transporter family Alide_2518 PF02201 SWIB/MDM2 domain Alide_2519 PF04324 BFD-like [2Fe-2S] binding domain Alide_2520 PF03544 Gram-negative bacterial TonB protein C-terminal Alide_2521 PF01618 Alide_2521 Alide_2522 PF02472 Biopolymer transport protein ExbD/TolR Alide_2523 PF10636 Hemin uptake protein hemP Alide_2524 PF03928 Domain of unknown function (DUF336) Alide_2525 PF01027 Inhibitor of apoptosis-promoting Bax1 Alide_2526 PF01047 MarR family Alide_2527 PF07690 Major Facilitator Superfamily Alide_2529 PF00893 Small Multidrug Resistance protein Alide_2530 PF02417 Alide_2530 Alide_2531 PF02417 Alide_2531 Alide_2532 PF02146 Sir2 family Alide_2533 PF00440 Bacterial regulatory proteins, tetR family Alide_2533 PF13305 WHG domain Alide_2534 PF07237 Protein of unknown function (DUF1428) Alide_2535 PF04828 Glutathione-dependent formaldehyde-activating enzyme Alide_2536 PF06983 3-demethylubiquinone-9 3-methyltransferase Alide_2537 PF08327 Activator of Hsp90 ATPase homolog 1-like protein Alide_2538 PF06983 3-demethylubiquinone-9 3-methyltransferase Alide_2540 PF08327 Activator of Hsp90 ATPase homolog 1-like protein Alide_2541 PF00588 SpoU rRNA Methylase family Alide_2541 PF08032 RNA 2'-O ribose methyltransferase substrate binding Alide_2542 PF00375 Sodium:dicarboxylate symporter family Alide_2543 PF00005 ABC transporter Alide_2544 PF13472 GDSL-like Lipase/Acylhydrolase family Alide_2545 PF09955 Alide_2545 Alide_2546 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide_2547 PF04972 BON domain Alide_2548 PF00916 Alide_2548 Alide_2548 PF01740 STAS domain Alide_2549 PF00990 GGDEF domain Alide_2550 PF13614 AAA domain Alide_2551 PF00501 AMP-binding enzyme Alide_2551 PF13193 AMP-binding enzyme C-terminal domain Alide_2551 PF16177 Alide_2551 Alide_2552 PF00857 Isochorismatase family Alide_2553 PF07995 Glucose / Sorbosone dehydrogenase Alide_2554 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2554 PF03466 LysR substrate binding domain Alide_2555 PF00171 Aldehyde dehydrogenase family Alide_2556 PF07007 Protein of unknown function (DUF1311) Alide_2557 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2557 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2557 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2558 PF04993 TfoX N-terminal domain Alide_2559 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_2559 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_2560 PF05050 Methyltransferase FkbM domain Alide_2562 PF00291 Pyridoxal-phosphate dependent enzyme Alide_2563 PF04320 Alide_2563 Alide_2564 PF04295 Alide_2564 Alide_2564 PF08666 SAF domain Alide_2565 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2566 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Alide_2566 PF13378 Enolase C-terminal domain-like Alide_2567 PF00392 Bacterial regulatory proteins, gntR family Alide_2567 PF07729 FCD domain Alide_2568 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2569 PF00701 Dihydrodipicolinate synthetase family Alide_2570 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2571 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide_2571 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_2572 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Alide_2572 PF13378 Enolase C-terminal domain-like Alide_2573 PF00171 Aldehyde dehydrogenase family Alide_2574 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Alide_2575 PF04376 Alide_2575 Alide_2575 PF04377 Alide_2575 Alide_2576 PF02678 Pirin Alide_2577 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2577 PF03466 LysR substrate binding domain Alide_2578 PF01593 Flavin containing amine oxidoreductase Alide_2578 PF13450 NAD(P)-binding Rossmann-like domain Alide_2579 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alide_2580 PF02390 Putative methyltransferase Alide_2581 PF00990 GGDEF domain Alide_2582 PF01411 tRNA synthetases class II (A) Alide_2582 PF02272 DHHA1 domain Alide_2582 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Alide_2583 PF00701 Dihydrodipicolinate synthetase family Alide_2584 PF04290 Alide_2584 Alide_2585 PF06808 Alide_2585 Alide_2586 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_2587 PF02615 Malate/L-lactate dehydrogenase Alide_2588 PF00392 Bacterial regulatory proteins, gntR family Alide_2588 PF07729 FCD domain Alide_2589 PF00849 RNA pseudouridylate synthase Alide_2590 PF00583 Acetyltransferase (GNAT) family Alide_2590 PF13549 ATP-grasp domain Alide_2590 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_2591 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Alide_2592 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alide_2592 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Alide_2592 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Alide_2592 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Alide_2593 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2594 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2595 PF04962 KduI/IolB family Alide_2596 PF00294 pfkB family carbohydrate kinase Alide_2596 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) Alide_2597 PF01380 SIS domain Alide_2597 PF01418 Helix-turn-helix domain, rpiR family Alide_2598 PF00730 HhH-GPD superfamily base excision DNA repair protein Alide_2598 PF02805 Metal binding domain of Ada Alide_2598 PF06029 AlkA N-terminal domain Alide_2598 PF12833 Helix-turn-helix domain Alide_2599 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Alide_2600 PF00892 EamA-like transporter family Alide_2601 PF00211 Adenylate and Guanylate cyclase catalytic domain Alide_2601 PF00498 FHA domain Alide_2602 PF02016 LD-carboxypeptidase Alide_2603 PF00561 alpha/beta hydrolase fold Alide_2603 PF14437 Alide_2603 Alide_2604 PF04299 Putative FMN-binding domain Alide_2605 PF01136 Alide_2605 Alide_2605 PF12392 Alide_2605 Alide_2606 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide_2607 PF03781 Sulfatase-modifying factor enzyme 1 Alide_2607 PF12867 DinB superfamily Alide_2608 PF10017 Alide_2608 Alide_2609 PF03922 OmpW family Alide_2610 PF05661 Alide_2610 Alide_2611 PF02769 AIR synthase related protein, C-terminal domain Alide_2611 PF13507 CobB/CobQ-like glutamine amidotransferase domain Alide_2612 PF00557 Metallopeptidase family M24 Alide_2613 PF01966 HD domain Alide_2613 PF08335 GlnD PII-uridylyltransferase Alide_2614 PF00860 Permease family Alide_2615 PF01327 Polypeptide deformylase Alide_2616 PF04304 Alide_2616 Alide_2618 PF11903 Alide_2618 Alide_2619 PF13671 AAA domain Alide_2620 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_2621 PF02643 Uncharacterized ACR, COG1430 Alide_2622 PF03971 Monomeric isocitrate dehydrogenase Alide_2623 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Alide_2623 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Alide_2624 PF02601 Alide_2624 Alide_2624 PF13742 Alide_2624 Alide_2625 PF01618 Alide_2625 Alide_2626 PF02472 Biopolymer transport protein ExbD/TolR Alide_2627 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Alide_2628 PF03966 Trm112p-like protein Alide_2629 PF02348 Cytidylyltransferase Alide_2630 PF00406 Adenylate kinase Alide_2630 PF05191 Adenylate kinase, active site lid Alide_2631 PF00710 Asparaginase Alide_2632 PF00717 Peptidase S24-like Alide_2632 PF01726 LexA DNA binding domain Alide_2634 PF00270 DEAD/DEAH box helicase Alide_2634 PF00271 Helicase conserved C-terminal domain Alide_2634 PF04408 Helicase associated domain (HA2) Alide_2634 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Alide_2634 PF11898 Alide_2634 Alide_2635 PF00108 Thiolase, N-terminal domain Alide_2635 PF02803 Thiolase, C-terminal domain Alide_2636 PF00501 AMP-binding enzyme Alide_2636 PF13193 AMP-binding enzyme C-terminal domain Alide_2637 PF02632 BioY family Alide_2638 PF02361 Cobalt transport protein Alide_2639 PF00005 ABC transporter Alide_2641 PF13441 Alide_2641 Alide_2642 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_2643 PF01926 50S ribosome-binding GTPase Alide_2644 PF01926 50S ribosome-binding GTPase Alide_2645 PF07690 Major Facilitator Superfamily Alide_2646 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2647 PF02426 Muconolactone delta-isomerase Alide_2648 PF00561 alpha/beta hydrolase fold Alide_2648 PF08386 TAP-like protein Alide_2649 PF00106 short chain dehydrogenase Alide_2650 PF00775 Dioxygenase Alide_2650 PF04444 Catechol dioxygenase N terminus Alide_2651 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Alide_2651 PF13378 Enolase C-terminal domain-like Alide_2652 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2652 PF03466 LysR substrate binding domain Alide_2653 PF01081 KDPG and KHG aldolase Alide_2654 PF00920 Dehydratase family Alide_2655 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide_2656 PF06808 Alide_2656 Alide_2657 PF04290 Alide_2657 Alide_2658 PF01202 Shikimate kinase Alide_2659 PF00356 Bacterial regulatory proteins, lacI family Alide_2659 PF13377 Periplasmic binding protein-like domain Alide_2660 PF00004 ATPase family associated with various cellular activities (AAA) Alide_2660 PF02861 Clp amino terminal domain Alide_2660 PF07724 AAA domain (Cdc48 subfamily) Alide_2660 PF10431 C-terminal, D2-small domain, of ClpB protein Alide_2661 PF02617 ATP-dependent Clp protease adaptor protein ClpS Alide_2662 PF02811 PHP domain Alide_2662 PF07733 Bacterial DNA polymerase III alpha subunit Alide_2662 PF14579 Helix-hairpin-helix motif Alide_2663 PF13525 Outer membrane lipoprotein Alide_2664 PF06733 DEAD_2 Alide_2664 PF13307 Helicase C-terminal domain Alide_2665 PF13672 Protein phosphatase 2C Alide_2667 PF03969 AFG1-like ATPase Alide_2668 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_2668 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2669 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide_2669 PF00364 Biotin-requiring enzyme Alide_2669 PF02817 e3 binding domain Alide_2670 PF00676 Dehydrogenase E1 component Alide_2670 PF02779 Transketolase, pyrimidine binding domain Alide_2670 PF16078 Alide_2670 Alide_2670 PF16870 Alide_2670 Alide_2671 PF01594 Alide_2671 Alide_2672 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2674 PF07287 Alide_2674 Alide_2675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2675 PF03466 LysR substrate binding domain Alide_2676 PF00582 Universal stress protein family Alide_2677 PF00005 ABC transporter Alide_2677 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_2678 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2678 PF12911 Alide_2678 Alide_2679 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2680 PF04191 Phospholipid methyltransferase Alide_2681 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_2682 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_2683 PF00892 EamA-like transporter family Alide_2684 PF04325 Protein of unknown function (DUF465) Alide_2685 PF14743 DNA ligase OB-like domain Alide_2686 PF03741 Alide_2686 Alide_2687 PF01276 Orn/Lys/Arg decarboxylase, major domain Alide_2687 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Alide_2687 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Alide_2689 PF01145 SPFH domain / Band 7 family Alide_2689 PF16200 Alide_2689 Alide_2690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2690 PF03466 LysR substrate binding domain Alide_2691 PF00205 Thiamine pyrophosphate enzyme, central domain Alide_2691 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_2691 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide_2692 PF02694 Alide_2692 Alide_2693 PF00589 Phage integrase family Alide_2694 PF03358 NADPH-dependent FMN reductase Alide_2695 PF00122 E1-E2 ATPase Alide_2695 PF00689 Cation transporting ATPase, C-terminus Alide_2695 PF00690 Cation transporter/ATPase, N-terminus Alide_2695 PF00702 haloacid dehalogenase-like hydrolase Alide_2696 PF04542 Sigma-70 region 2 Alide_2696 PF08281 Sigma-70, region 4 Alide_2698 PF03773 Alide_2698 Alide_2699 PF13192 Thioredoxin domain Alide_2700 PF02566 OsmC-like protein Alide_2701 PF01545 Cation efflux family Alide_2703 PF13230 Glutamine amidotransferases class-II Alide_2704 PF00175 Oxidoreductase NAD-binding domain Alide_2704 PF00970 Oxidoreductase FAD-binding domain Alide_2704 PF12838 4Fe-4S dicluster domain Alide_2705 PF00108 Thiolase, N-terminal domain Alide_2705 PF02803 Thiolase, C-terminal domain Alide_2706 PF10982 Protein of unknown function (DUF2789) Alide_2707 PF13192 Thioredoxin domain Alide_2708 PF03773 Alide_2708 Alide_2711 PF00665 Integrase core domain Alide_2711 PF13276 Alide_2711 Alide_2712 PF01527 Transposase Alide_2714 PF01131 DNA topoisomerase Alide_2714 PF01396 Alide_2714 Alide_2714 PF01751 Toprim domain Alide_2715 PF00436 Single-strand binding protein family Alide_2716 PF11358 Alide_2716 Alide_2717 PF08900 Alide_2717 Alide_2719 PF11198 Alide_2719 Alide_2722 PF13614 AAA domain Alide_2723 PF05930 Prophage CP4-57 regulatory protein (AlpA) Alide_2725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2725 PF03466 LysR substrate binding domain Alide_2726 PF00873 AcrB/AcrD/AcrF family Alide_2727 PF11604 Copper binding periplasmic protein CusF Alide_2727 PF16576 Alide_2727 Alide_2728 PF02321 Outer membrane efflux protein Alide_2731 PF00122 E1-E2 ATPase Alide_2731 PF00702 haloacid dehalogenase-like hydrolase Alide_2732 PF11339 Alide_2732 Alide_2733 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_2734 PF04191 Phospholipid methyltransferase Alide_2735 PF11666 Alide_2735 Alide_2737 PF11604 Copper binding periplasmic protein CusF Alide_2738 PF00127 Copper binding proteins, plastocyanin/azurin family Alide_2739 PF05275 Alide_2739 Alide_2740 PF00394 Multicopper oxidase Alide_2740 PF07731 Multicopper oxidase Alide_2740 PF07732 Multicopper oxidase Alide_2741 PF00072 Response regulator receiver domain Alide_2741 PF00486 Transcriptional regulatory protein, C terminal Alide_2742 PF00512 His Kinase A (phospho-acceptor) domain Alide_2742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_2743 PF13663 Alide_2743 Alide_2745 PF07731 Multicopper oxidase Alide_2745 PF07732 Multicopper oxidase Alide_2746 PF01527 Transposase Alide_2747 PF00665 Integrase core domain Alide_2747 PF13276 Alide_2747 Alide_2749 PF00892 EamA-like transporter family Alide_2750 PF00122 E1-E2 ATPase Alide_2750 PF00702 haloacid dehalogenase-like hydrolase Alide_2751 PF02583 Metal-sensitive transcriptional repressor Alide_2752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2752 PF03466 LysR substrate binding domain Alide_2753 PF01381 Helix-turn-helix Alide_2754 PF00216 Bacterial DNA-binding protein Alide_2757 PF05099 Tellurite resistance protein TerB Alide_2758 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2758 PF03466 LysR substrate binding domain Alide_2759 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_2760 PF01734 Patatin-like phospholipase Alide_2761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2761 PF03466 LysR substrate binding domain Alide_2762 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2763 PF04295 Alide_2763 Alide_2763 PF08666 SAF domain Alide_2764 PF00171 Aldehyde dehydrogenase family Alide_2765 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_2766 PF06080 Alide_2766 Alide_2767 PF01177 Asp/Glu/Hydantoin racemase Alide_2768 PF05013 N-formylglutamate amidohydrolase Alide_2769 PF01979 Amidohydrolase family Alide_2770 PF01979 Amidohydrolase family Alide_2771 PF05962 HutD Alide_2772 PF00005 ABC transporter Alide_2773 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2774 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_2775 PF01614 Bacterial transcriptional regulator Alide_2775 PF09339 IclR helix-turn-helix domain Alide_2776 PF01175 Urocanase Alide_2776 PF17391 Alide_2776 Alide_2776 PF17392 Alide_2776 Alide_2777 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Alide_2778 PF00392 Bacterial regulatory proteins, gntR family Alide_2778 PF07702 UTRA domain Alide_2779 PF00221 Aromatic amino acid lyase Alide_2780 PF00392 Bacterial regulatory proteins, gntR family Alide_2780 PF07702 UTRA domain Alide_2781 PF00005 ABC transporter Alide_2782 PF00528 Binding-protein-dependent transport system inner membrane component Alide_2783 PF09084 NMT1/THI5 like Alide_2784 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2784 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2784 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2785 PF02515 CoA-transferase family III Alide_2786 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2786 PF03466 LysR substrate binding domain Alide_2787 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2788 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2789 PF00682 HMGL-like Alide_2790 PF02515 CoA-transferase family III Alide_2791 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2791 PF03466 LysR substrate binding domain Alide_2792 PF10093 Alide_2792 Alide_2793 PF01132 Elongation factor P (EF-P) OB domain Alide_2793 PF08207 Elongation factor P (EF-P) KOW-like domain Alide_2793 PF09285 Elongation factor P, C-terminal Alide_2795 PF00474 Sodium:solute symporter family Alide_2796 PF13937 Alide_2796 Alide_2797 PF00391 PEP-utilising enzyme, mobile domain Alide_2797 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Alide_2797 PF02896 PEP-utilising enzyme, TIM barrel domain Alide_2798 PF03618 Alide_2798 Alide_2799 PF00873 AcrB/AcrD/AcrF family Alide_2800 PF16576 Alide_2800 Alide_2802 PF02321 Outer membrane efflux protein Alide_2804 PF00199 Catalase Alide_2804 PF06628 Catalase-related immune-responsive Alide_2805 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2805 PF13192 Thioredoxin domain Alide_2806 PF00578 AhpC/TSA family Alide_2806 PF10417 C-terminal domain of 1-Cys peroxiredoxin Alide_2807 PF00210 Ferritin-like domain Alide_2808 PF05247 Flagellar transcriptional activator (FlhD) Alide_2809 PF05280 Flagellar transcriptional activator (FlhC) Alide_2810 PF00311 Phosphoenolpyruvate carboxylase Alide_2811 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Alide_2811 PF03900 Porphobilinogen deaminase, C-terminal domain Alide_2812 PF02602 Uroporphyrinogen-III synthase HemD Alide_2813 PF04375 Alide_2813 Alide_2814 PF07219 Alide_2814 Alide_2815 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_2816 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO Alide_2817 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_2818 PF02630 SCO1/SenC Alide_2820 PF00133 tRNA synthetases class I (I, L, M and V) Alide_2820 PF08264 Anticodon-binding domain of tRNA Alide_2820 PF10458 Valyl tRNA synthetase tRNA binding arm Alide_2821 PF00483 Nucleotidyl transferase Alide_2822 PF01206 Sulfurtransferase TusA Alide_2823 PF00293 NUDIX domain Alide_2823 PF14803 Nudix N-terminal Alide_2824 PF00291 Pyridoxal-phosphate dependent enzyme Alide_2825 PF10038 Alide_2825 Alide_2826 PF03743 Bacterial conjugation TrbI-like protein Alide_2827 PF03524 Conjugal transfer protein Alide_2828 PF04335 VirB8 protein Alide_2829 PF04610 Alide_2829 Alide_2832 PF03135 Alide_2832 Alide_2833 PF05101 Alide_2833 Alide_2834 PF04956 Alide_2834 Alide_2835 PF00437 Type II/IV secretion system protein Alide_2836 PF01402 Ribbon-helix-helix protein, copG family Alide_2837 PF02534 Type IV secretory system Conjugative DNA transfer Alide_2839 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2839 PF03466 LysR substrate binding domain Alide_2840 PF12697 Alpha/beta hydrolase family Alide_2841 PF01515 Phosphate acetyl/butaryl transferase Alide_2842 PF00582 Universal stress protein family Alide_2843 PF00106 short chain dehydrogenase Alide_2845 PF07167 Alide_2845 Alide_2845 PF12551 Alide_2845 Alide_2846 PF00440 Bacterial regulatory proteins, tetR family Alide_2846 PF08359 YsiA-like protein, C-terminal region Alide_2848 PF16576 Alide_2848 Alide_2849 PF00005 ABC transporter Alide_2850 PF12698 ABC-2 family transporter protein Alide_2851 PF12698 ABC-2 family transporter protein Alide_2852 PF02321 Outer membrane efflux protein Alide_2853 PF00465 Iron-containing alcohol dehydrogenase Alide_2854 PF11127 Protein of unknown function (DUF2892) Alide_2855 PF00753 Metallo-beta-lactamase superfamily Alide_2855 PF07521 RNA-metabolising metallo-beta-lactamase Alide_2855 PF10996 Beta-Casp domain Alide_2856 PF03641 Possible lysine decarboxylase Alide_2857 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) Alide_2858 PF01322 Cytochrome C' Alide_2859 PF00871 Acetokinase family Alide_2860 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Alide_2860 PF09364 XFP N-terminal domain Alide_2863 PF13801 Heavy-metal resistance Alide_2864 PF13490 Putative zinc-finger Alide_2865 PF04542 Sigma-70 region 2 Alide_2865 PF08281 Sigma-70, region 4 Alide_2866 PF13670 Alide_2866 Alide_2867 PF10029 Alide_2867 Alide_2868 PF00175 Oxidoreductase NAD-binding domain Alide_2868 PF00258 Flavodoxin Alide_2868 PF00970 Oxidoreductase FAD-binding domain Alide_2868 PF03929 Alide_2868 Alide_2869 PF02424 ApbE family Alide_2871 PF01292 Prokaryotic cytochrome b561 Alide_2872 PF00027 Cyclic nucleotide-binding domain Alide_2872 PF13545 Crp-like helix-turn-helix domain Alide_2873 PF00403 Heavy-metal-associated domain Alide_2874 PF00122 E1-E2 ATPase Alide_2874 PF00702 haloacid dehalogenase-like hydrolase Alide_2875 PF11843 Alide_2875 Alide_2876 PF10502 Signal peptidase, peptidase S26 Alide_2877 PF11000 Alide_2877 Alide_2879 PF00665 Integrase core domain Alide_2879 PF13276 Alide_2879 Alide_2880 PF01527 Transposase Alide_2883 PF00378 Enoyl-CoA hydratase/isomerase family Alide_2884 PF00440 Bacterial regulatory proteins, tetR family Alide_2884 PF08359 YsiA-like protein, C-terminal region Alide_2885 PF00501 AMP-binding enzyme Alide_2885 PF13193 AMP-binding enzyme C-terminal domain Alide_2886 PF00682 HMGL-like Alide_2887 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Alide_2887 PF00364 Biotin-requiring enzyme Alide_2887 PF02785 Biotin carboxylase C-terminal domain Alide_2887 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_2888 PF01039 Carboxyl transferase domain Alide_2889 PF00501 AMP-binding enzyme Alide_2890 PF00378 Enoyl-CoA hydratase/isomerase family Alide_2891 PF13458 Periplasmic binding protein Alide_2892 PF13616 PPIC-type PPIASE domain Alide_2892 PF13624 SurA N-terminal domain Alide_2893 PF00216 Bacterial DNA-binding protein Alide_2894 PF01066 CDP-alcohol phosphatidyltransferase Alide_2895 PF01541 GIY-YIG catalytic domain Alide_2895 PF02151 UvrB/uvrC motif Alide_2895 PF08459 UvrC Helix-hairpin-helix N-terminal Alide_2895 PF14520 Helix-hairpin-helix domain Alide_2897 PF07690 Major Facilitator Superfamily Alide_2898 PF00816 H-NS histone family Alide_2899 PF01614 Bacterial transcriptional regulator Alide_2899 PF09339 IclR helix-turn-helix domain Alide_2900 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_2901 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2901 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2901 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2902 PF00501 AMP-binding enzyme Alide_2902 PF13193 AMP-binding enzyme C-terminal domain Alide_2903 PF13458 Periplasmic binding protein Alide_2904 PF00005 ABC transporter Alide_2905 PF00005 ABC transporter Alide_2905 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_2906 PF02653 Alide_2906 Alide_2907 PF02653 Alide_2907 Alide_2908 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2909 PF13609 Gram-negative porin Alide_2910 PF05977 Transmembrane secretion effector Alide_2911 PF00378 Enoyl-CoA hydratase/isomerase family Alide_2912 PF00171 Aldehyde dehydrogenase family Alide_2913 PF00171 Aldehyde dehydrogenase family Alide_2914 PF03972 MmgE/PrpD family Alide_2915 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2917 PF00171 Aldehyde dehydrogenase family Alide_2918 PF00107 Zinc-binding dehydrogenase Alide_2918 PF08240 Alcohol dehydrogenase GroES-like domain Alide_2919 PF13458 Periplasmic binding protein Alide_2920 PF02653 Alide_2920 Alide_2921 PF02653 Alide_2921 Alide_2922 PF00005 ABC transporter Alide_2922 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_2923 PF00005 ABC transporter Alide_2924 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase Alide_2924 PF13450 NAD(P)-binding Rossmann-like domain Alide_2925 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_2926 PF02515 CoA-transferase family III Alide_2927 PF13452 N-terminal half of MaoC dehydratase Alide_2928 PF00766 Electron transfer flavoprotein FAD-binding domain Alide_2928 PF01012 Electron transfer flavoprotein domain Alide_2929 PF01012 Electron transfer flavoprotein domain Alide_2930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2930 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2931 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2931 PF03466 LysR substrate binding domain Alide_2932 PF03972 MmgE/PrpD family Alide_2933 PF02515 CoA-transferase family III Alide_2935 PF00501 AMP-binding enzyme Alide_2935 PF13193 AMP-binding enzyme C-terminal domain Alide_2935 PF16177 Alide_2935 Alide_2936 PF00108 Thiolase, N-terminal domain Alide_2936 PF02803 Thiolase, C-terminal domain Alide_2937 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_2938 PF01575 MaoC like domain Alide_2938 PF13452 N-terminal half of MaoC dehydratase Alide_2939 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2939 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2939 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2940 PF12697 Alpha/beta hydrolase family Alide_2941 PF01614 Bacterial transcriptional regulator Alide_2941 PF09339 IclR helix-turn-helix domain Alide_2942 PF01614 Bacterial transcriptional regulator Alide_2942 PF09339 IclR helix-turn-helix domain Alide_2943 PF03972 MmgE/PrpD family Alide_2944 PF11136 Alide_2944 Alide_2945 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2946 PF00732 GMC oxidoreductase Alide_2946 PF05199 GMC oxidoreductase Alide_2947 PF00171 Aldehyde dehydrogenase family Alide_2948 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2948 PF03466 LysR substrate binding domain Alide_2949 PF02515 CoA-transferase family III Alide_2950 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2951 PF00378 Enoyl-CoA hydratase/isomerase family Alide_2952 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_2954 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2954 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2954 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2955 PF01575 MaoC like domain Alide_2956 PF07287 Alide_2956 Alide_2958 PF00108 Thiolase, N-terminal domain Alide_2958 PF02803 Thiolase, C-terminal domain Alide_2959 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2960 PF02515 CoA-transferase family III Alide_2961 PF02515 CoA-transferase family III Alide_2964 PF02515 CoA-transferase family III Alide_2966 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_2967 PF03466 LysR substrate binding domain Alide_2968 PF03972 MmgE/PrpD family Alide_2969 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_2970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alide_2970 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_2971 PF00005 ABC transporter Alide_2972 PF00005 ABC transporter Alide_2972 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_2973 PF02653 Alide_2973 Alide_2974 PF02653 Alide_2974 Alide_2975 PF13458 Periplasmic binding protein Alide_2976 PF00378 Enoyl-CoA hydratase/isomerase family Alide_2977 PF00881 Nitroreductase family Alide_2978 PF13474 SnoaL-like domain Alide_2979 PF03401 Tripartite tricarboxylate transporter family receptor Alide_2980 PF02515 CoA-transferase family III Alide_2981 PF02515 CoA-transferase family III Alide_2982 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_2982 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_2982 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_2983 PF01575 MaoC like domain Alide_2984 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_2985 PF00440 Bacterial regulatory proteins, tetR family Alide_2986 PF00004 ATPase family associated with various cellular activities (AAA) Alide_2986 PF02190 ATP-dependent protease La (LON) domain Alide_2986 PF05362 Lon protease (S16) C-terminal proteolytic domain Alide_2987 PF06689 ClpX C4-type zinc finger Alide_2987 PF07724 AAA domain (Cdc48 subfamily) Alide_2987 PF10431 C-terminal, D2-small domain, of ClpB protein Alide_2988 PF00574 Clp protease Alide_2989 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide_2989 PF05697 Bacterial trigger factor protein (TF) Alide_2989 PF05698 Bacterial trigger factor protein (TF) C-terminus Alide_2990 PF00873 AcrB/AcrD/AcrF family Alide_2991 PF16576 Alide_2991 Alide_2992 PF00494 Squalene/phytoene synthase Alide_2993 PF00494 Squalene/phytoene synthase Alide_2994 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_2994 PF02203 Tar ligand binding domain homologue Alide_2995 PF01593 Flavin containing amine oxidoreductase Alide_2996 PF11067 Alide_2996 Alide_2996 PF11981 Alide_2996 Alide_2997 PF03631 Alide_2997 Alide_2998 PF09842 Alide_2998 Alide_2999 PF01565 FAD binding domain Alide_2999 PF02913 FAD linked oxidases, C-terminal domain Alide_3000 PF00303 Thymidylate synthase Alide_3001 PF00186 Dihydrofolate reductase Alide_3002 PF11445 Alide_3002 Alide_3003 PF00691 OmpA family Alide_3004 PF05650 Alide_3004 Alide_3005 PF11828 Alide_3005 Alide_3006 PF01609 Transposase DDE domain Alide_3007 PF13340 Alide_3007 Alide_3008 PF00072 Response regulator receiver domain Alide_3008 PF00486 Transcriptional regulatory protein, C terminal Alide_3009 PF00512 His Kinase A (phospho-acceptor) domain Alide_3009 PF00582 Universal stress protein family Alide_3009 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3009 PF02702 Osmosensitive K+ channel His kinase sensor domain Alide_3009 PF13493 Domain of unknown function (DUF4118) Alide_3010 PF02669 Alide_3010 Alide_3011 PF00122 E1-E2 ATPase Alide_3011 PF00702 haloacid dehalogenase-like hydrolase Alide_3012 PF03814 Alide_3012 Alide_3014 PF03372 Endonuclease/Exonuclease/phosphatase family Alide_3015 PF00072 Response regulator receiver domain Alide_3015 PF00158 Sigma-54 interaction domain Alide_3015 PF02954 Bacterial regulatory protein, Fis family Alide_3016 PF00512 His Kinase A (phospho-acceptor) domain Alide_3016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3018 PF00120 Glutamine synthetase, catalytic domain Alide_3018 PF03951 Glutamine synthetase, beta-Grasp domain Alide_3019 PF00994 Probable molybdopterin binding domain Alide_3020 PF07264 Etoposide-induced protein 2 Alide_3021 PF04116 Alide_3021 Alide_3022 PF01522 Polysaccharide deacetylase Alide_3023 PF02239 Cytochrome D1 heme domain Alide_3024 PF00849 RNA pseudouridylate synthase Alide_3025 PF00156 Phosphoribosyl transferase domain Alide_3026 PF00709 Adenylosuccinate synthetase Alide_3027 PF13393 Histidyl-tRNA synthetase Alide_3028 PF09838 Alide_3028 Alide_3029 PF01145 SPFH domain / Band 7 family Alide_3030 PF01145 SPFH domain / Band 7 family Alide_3030 PF12221 Alide_3030 Alide_3031 PF01926 50S ribosome-binding GTPase Alide_3031 PF13167 Alide_3031 Alide_3031 PF16360 Alide_3031 Alide_3032 PF17209 Alide_3032 Alide_3033 PF01926 50S ribosome-binding GTPase Alide_3033 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Alide_3034 PF13360 PQQ-like domain Alide_3035 PF09976 Tetratricopeptide repeat Alide_3036 PF03129 Anticodon binding domain Alide_3036 PF13393 Histidyl-tRNA synthetase Alide_3037 PF04551 GcpE protein Alide_3038 PF13413 Helix-turn-helix domain Alide_3038 PF13464 Alide_3038 Alide_3039 PF13432 Tetratricopeptide repeat Alide_3039 PF14559 Tetratricopeptide repeat Alide_3040 PF04055 Radical SAM superfamily Alide_3041 PF00334 Nucleoside diphosphate kinase Alide_3042 PF00849 RNA pseudouridylate synthase Alide_3042 PF01479 S4 domain Alide_3043 PF04079 Putative transcriptional regulators (Ypuh-like) Alide_3044 PF00849 RNA pseudouridylate synthase Alide_3044 PF01479 S4 domain Alide_3045 PF01476 LysM domain Alide_3045 PF01551 Peptidase family M23 Alide_3046 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Alide_3047 PF01975 Survival protein SurE Alide_3048 PF00990 GGDEF domain Alide_3049 PF09423 PhoD-like phosphatase Alide_3049 PF16655 Alide_3049 Alide_3050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3050 PF03466 LysR substrate binding domain Alide_3051 PF01070 FMN-dependent dehydrogenase Alide_3052 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3055 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_3056 PF00440 Bacterial regulatory proteins, tetR family Alide_3057 PF00488 MutS domain V Alide_3057 PF01624 MutS domain I Alide_3057 PF05188 MutS domain II Alide_3057 PF05190 MutS family domain IV Alide_3057 PF05192 MutS domain III Alide_3058 PF02321 Outer membrane efflux protein Alide_3059 PF00873 AcrB/AcrD/AcrF family Alide_3060 PF00873 AcrB/AcrD/AcrF family Alide_3061 PF16576 Alide_3061 Alide_3062 PF12697 Alpha/beta hydrolase family Alide_3063 PF02673 Alide_3063 Alide_3065 PF13239 Alide_3065 Alide_3066 PF06580 Alide_3066 Alide_3067 PF00072 Response regulator receiver domain Alide_3067 PF04397 LytTr DNA-binding domain Alide_3068 PF07690 Major Facilitator Superfamily Alide_3069 PF07690 Major Facilitator Superfamily Alide_3070 PF01494 FAD binding domain Alide_3071 PF00330 Aconitase family (aconitate hydratase) Alide_3071 PF00694 Aconitase C-terminal domain Alide_3072 PF00816 H-NS histone family Alide_3073 PF00149 Calcineurin-like phosphoesterase Alide_3074 PF02424 ApbE family Alide_3075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_3077 PF13473 Cupredoxin-like domain Alide_3078 PF04205 FMN-binding domain Alide_3078 PF12801 Alide_3078 Alide_3079 PF05048 Periplasmic copper-binding protein (NosD) Alide_3080 PF00005 ABC transporter Alide_3081 PF12679 Alide_3081 Alide_3082 PF05573 NosL Alide_3083 PF05573 NosL Alide_3084 PF00270 DEAD/DEAH box helicase Alide_3084 PF00271 Helicase conserved C-terminal domain Alide_3085 PF04228 Alide_3085 Alide_3086 PF00692 dUTPase Alide_3087 PF06181 Alide_3087 Alide_3088 PF02625 XdhC and CoxI family Alide_3088 PF13478 XdhC Rossmann domain Alide_3090 PF00576 HIUase/Transthyretin family Alide_3091 PF01019 Gamma-glutamyltranspeptidase Alide_3094 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_3094 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide_3095 PF01261 Xylose isomerase-like TIM barrel Alide_3096 PF00205 Thiamine pyrophosphate enzyme, central domain Alide_3096 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_3096 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide_3097 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3097 PF03466 LysR substrate binding domain Alide_3098 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_3099 PF00202 Aminotransferase class-III Alide_3100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3100 PF03466 LysR substrate binding domain Alide_3101 PF05161 MOFRL family Alide_3101 PF13660 Domain of unknown function (DUF4147) Alide_3102 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3103 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_3104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3104 PF03466 LysR substrate binding domain Alide_3105 PF00392 Bacterial regulatory proteins, gntR family Alide_3105 PF07729 FCD domain Alide_3106 PF01522 Polysaccharide deacetylase Alide_3107 PF01546 Peptidase family M20/M25/M40 Alide_3107 PF09349 OHCU decarboxylase Alide_3108 PF01546 Peptidase family M20/M25/M40 Alide_3108 PF07687 Peptidase dimerisation domain Alide_3110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3111 PF00860 Permease family Alide_3112 PF00390 Malic enzyme, N-terminal domain Alide_3112 PF01515 Phosphate acetyl/butaryl transferase Alide_3112 PF03949 Malic enzyme, NAD binding domain Alide_3113 PF04264 YceI-like domain Alide_3114 PF04264 YceI-like domain Alide_3115 PF01292 Prokaryotic cytochrome b561 Alide_3116 PF11813 Alide_3116 Alide_3117 PF00578 AhpC/TSA family Alide_3118 PF02562 PhoH-like protein Alide_3118 PF13638 PIN domain Alide_3119 PF00171 Aldehyde dehydrogenase family Alide_3120 PF00772 DnaB-like helicase N terminal domain Alide_3120 PF03796 DnaB-like helicase C terminal domain Alide_3121 PF01281 Ribosomal protein L9, N-terminal domain Alide_3121 PF03948 Ribosomal protein L9, C-terminal domain Alide_3122 PF01084 Ribosomal protein S18 Alide_3124 PF01250 Ribosomal protein S6 Alide_3125 PF01025 GrpE Alide_3126 PF00012 Hsp70 protein Alide_3127 PF00226 DnaJ domain Alide_3127 PF00684 DnaJ central domain Alide_3127 PF01556 DnaJ C terminal domain Alide_3128 PF07589 Alide_3128 Alide_3129 PF01212 Beta-eliminating lyase Alide_3130 PF01136 Alide_3130 Alide_3131 PF01136 Alide_3131 Alide_3132 PF02036 SCP-2 sterol transfer family Alide_3133 PF08859 Alide_3133 Alide_3134 PF02441 Flavoprotein Alide_3135 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Alide_3136 PF00067 Cytochrome P450 Alide_3137 PF00753 Metallo-beta-lactamase superfamily Alide_3137 PF07521 RNA-metabolising metallo-beta-lactamase Alide_3137 PF10996 Beta-Casp domain Alide_3138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3138 PF03466 LysR substrate binding domain Alide_3139 PF00330 Aconitase family (aconitate hydratase) Alide_3140 PF08085 Alide_3140 Alide_3141 PF00694 Aconitase C-terminal domain Alide_3142 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide_3143 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alide_3143 PF02774 Semialdehyde dehydrogenase, dimerisation domain Alide_3145 PF01416 tRNA pseudouridine synthase Alide_3146 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Alide_3147 PF00291 Pyridoxal-phosphate dependent enzyme Alide_3148 PF00290 Tryptophan synthase alpha chain Alide_3149 PF01039 Carboxyl transferase domain Alide_3150 PF02325 Alide_3150 Alide_3151 PF02190 ATP-dependent protease La (LON) domain Alide_3152 PF02719 Polysaccharide biosynthesis protein Alide_3152 PF13727 CoA-binding domain Alide_3153 PF13440 Alide_3153 Alide_3154 PF00132 Bacterial transferase hexapeptide (six repeats) Alide_3155 PF13477 Glycosyl transferase 4-like Alide_3155 PF13692 Glycosyl transferases group 1 Alide_3156 PF00535 Glycosyl transferase family 2 Alide_3157 PF13649 Methyltransferase domain Alide_3158 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Alide_3159 PF02397 Alide_3159 Alide_3160 PF00152 tRNA synthetases class II (D, K and N) Alide_3160 PF01336 OB-fold nucleic acid binding domain Alide_3161 PF00924 Mechanosensitive ion channel Alide_3162 PF13458 Periplasmic binding protein Alide_3163 PF02653 Alide_3163 Alide_3164 PF02653 Alide_3164 Alide_3164 PF11862 Alide_3164 Alide_3165 PF00005 ABC transporter Alide_3165 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_3166 PF00005 ABC transporter Alide_3167 PF00365 Phosphofructokinase Alide_3168 PF00933 Glycosyl hydrolase family 3 N terminal domain Alide_3169 PF01648 4'-phosphopantetheinyl transferase superfamily Alide_3170 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Alide_3171 PF02565 Recombination protein O C terminal Alide_3171 PF11967 Recombination protein O N terminal Alide_3172 PF01926 50S ribosome-binding GTPase Alide_3172 PF07650 KH domain Alide_3173 PF00035 Double-stranded RNA binding motif Alide_3173 PF14622 Ribonuclease-III-like Alide_3174 PF16137 Alide_3174 Alide_3175 PF00717 Peptidase S24-like Alide_3175 PF10502 Signal peptidase, peptidase S26 Alide_3176 PF00009 Elongation factor Tu GTP binding domain Alide_3176 PF00679 Elongation factor G C-terminus Alide_3176 PF03144 Elongation factor Tu domain 2 Alide_3176 PF06421 GTP-binding protein LepA C-terminus Alide_3177 PF13180 PDZ domain Alide_3177 PF13365 Trypsin-like peptidase domain Alide_3178 PF03888 MucB/RseB family Alide_3178 PF17188 Alide_3178 Alide_3179 PF03872 Anti sigma-E protein RseA, N-terminal domain Alide_3180 PF04542 Sigma-70 region 2 Alide_3180 PF08281 Sigma-70, region 4 Alide_3182 PF00109 Beta-ketoacyl synthase, N-terminal domain Alide_3182 PF02801 Beta-ketoacyl synthase, C-terminal domain Alide_3183 PF00550 Phosphopantetheine attachment site Alide_3184 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_3185 PF00698 Acyl transferase domain Alide_3186 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Alide_3186 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Alide_3187 PF02504 Fatty acid synthesis protein Alide_3188 PF01783 Ribosomal L32p protein family Alide_3189 PF02620 Alide_3189 Alide_3190 PF02545 Maf-like protein Alide_3191 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide_3192 PF01343 Peptidase family S49 Alide_3193 PF00355 Rieske [2Fe-2S] domain Alide_3194 PF13419 Haloacid dehalogenase-like hydrolase Alide_3195 PF00849 RNA pseudouridylate synthase Alide_3195 PF01479 S4 domain Alide_3196 PF00575 S1 RNA binding domain Alide_3196 PF10150 Ribonuclease E/G family Alide_3197 PF03883 Alide_3197 Alide_3198 PF13640 2OG-Fe(II) oxygenase superfamily Alide_3199 PF14489 QueF-like protein Alide_3199 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Alide_3200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3200 PF08447 PAS fold Alide_3201 PF00817 impB/mucB/samB family Alide_3201 PF11798 IMS family HHH motif Alide_3201 PF11799 impB/mucB/samB family C-terminal domain Alide_3202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3202 PF03466 LysR substrate binding domain Alide_3203 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3204 PF02515 CoA-transferase family III Alide_3205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3205 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3207 PF01070 FMN-dependent dehydrogenase Alide_3208 PF00691 OmpA family Alide_3209 PF00990 GGDEF domain Alide_3209 PF17152 Alide_3209 Alide_3210 PF13689 Alide_3210 Alide_3211 PF00905 Penicillin binding protein transpeptidase domain Alide_3211 PF00912 Transglycosylase Alide_3211 PF06832 Alide_3211 Alide_3213 PF02515 CoA-transferase family III Alide_3214 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3214 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3214 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3215 PF13380 CoA binding domain Alide_3215 PF13549 ATP-grasp domain Alide_3215 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_3216 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3216 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3216 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3217 PF00710 Asparaginase Alide_3218 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3219 PF03466 LysR substrate binding domain Alide_3220 PF00149 Calcineurin-like phosphoesterase Alide_3221 PF00207 Alpha-2-macroglobulin family Alide_3221 PF01835 MG2 domain Alide_3221 PF07703 Alpha-2-macroglobulin family N-terminal region Alide_3221 PF11974 Alpha-2-macroglobulin MG1 domain Alide_3222 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3223 PF00206 Lyase Alide_3223 PF14698 Argininosuccinate lyase C-terminal Alide_3224 PF06580 Alide_3224 Alide_3225 PF03180 NLPA lipoprotein Alide_3226 PF04293 Alide_3226 Alide_3227 PF04285 Alide_3227 Alide_3228 PF06798 Alide_3228 Alide_3228 PF08298 PrkA AAA domain Alide_3229 PF02082 Transcriptional regulator Alide_3230 PF01814 Hemerythrin HHE cation binding domain Alide_3230 PF04405 Alide_3230 Alide_3232 PF12843 Alide_3232 Alide_3233 PF05425 Alide_3233 Alide_3234 PF00248 Aldo/keto reductase family Alide_3235 PF04102 SlyX Alide_3236 PF00155 Aminotransferase class I and II Alide_3237 PF06445 GyrI-like small molecule binding domain Alide_3238 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3239 PF01425 Amidase Alide_3240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3240 PF03466 LysR substrate binding domain Alide_3241 PF00633 Helix-hairpin-helix motif Alide_3241 PF00730 HhH-GPD superfamily base excision DNA repair protein Alide_3241 PF10576 Iron-sulfur binding domain of endonuclease III Alide_3242 PF01661 Macro domain Alide_3243 PF02277 Phosphoribosyltransferase Alide_3244 PF07685 CobB/CobQ-like glutamine amidotransferase domain Alide_3244 PF13500 AAA domain Alide_3245 PF00155 Aminotransferase class I and II Alide_3246 PF03186 Alide_3246 Alide_3247 PF12019 Type II transport protein GspH Alide_3248 PF07963 Prokaryotic N-terminal methylation motif Alide_3249 PF07963 Prokaryotic N-terminal methylation motif Alide_3249 PF16074 Alide_3249 Alide_3250 PF13681 Alide_3250 Alide_3250 PF14341 Alide_3250 Alide_3251 PF05567 Neisseria PilC beta-propeller domain Alide_3252 PF07963 Prokaryotic N-terminal methylation motif Alide_3252 PF16732 Alide_3252 Alide_3253 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Alide_3253 PF01872 RibD C-terminal domain Alide_3254 PF13091 PLD-like domain Alide_3255 PF01207 Dihydrouridine synthase (Dus) Alide_3256 PF05175 Methyltransferase small domain Alide_3257 PF00583 Acetyltransferase (GNAT) family Alide_3258 PF00171 Aldehyde dehydrogenase family Alide_3260 PF00004 ATPase family associated with various cellular activities (AAA) Alide_3260 PF02861 Clp amino terminal domain Alide_3260 PF07724 AAA domain (Cdc48 subfamily) Alide_3260 PF10431 C-terminal, D2-small domain, of ClpB protein Alide_3261 PF02391 MoaE protein Alide_3263 PF11346 Alide_3263 Alide_3265 PF00701 Dihydrodipicolinate synthetase family Alide_3266 PF02597 ThiS family Alide_3267 PF00994 Probable molybdopterin binding domain Alide_3267 PF03453 MoeA N-terminal region (domain I and II) Alide_3267 PF03454 MoeA C-terminal region (domain IV) Alide_3268 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Alide_3269 PF00291 Pyridoxal-phosphate dependent enzyme Alide_3269 PF14821 Threonine synthase N terminus Alide_3270 PF01850 PIN domain Alide_3271 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Alide_3272 PF00742 Homoserine dehydrogenase Alide_3272 PF01842 ACT domain Alide_3272 PF03447 Homoserine dehydrogenase, NAD binding domain Alide_3273 PF00155 Aminotransferase class I and II Alide_3274 PF04430 Protein of unknown function (DUF498/DUF598) Alide_3275 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3276 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3276 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3276 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3277 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3277 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3278 PF00766 Electron transfer flavoprotein FAD-binding domain Alide_3278 PF01012 Electron transfer flavoprotein domain Alide_3279 PF01012 Electron transfer flavoprotein domain Alide_3280 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3281 PF00108 Thiolase, N-terminal domain Alide_3281 PF02803 Thiolase, C-terminal domain Alide_3282 PF01796 Alide_3282 Alide_3282 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) Alide_3284 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3285 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3286 PF13380 CoA binding domain Alide_3286 PF13549 ATP-grasp domain Alide_3286 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_3287 PF01796 Alide_3287 Alide_3288 PF02803 Thiolase, C-terminal domain Alide_3289 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3290 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_3290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_3293 PF01614 Bacterial transcriptional regulator Alide_3293 PF09339 IclR helix-turn-helix domain Alide_3294 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3294 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3295 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3296 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3297 PF13577 SnoaL-like domain Alide_3298 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3299 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_3300 PF02515 CoA-transferase family III Alide_3301 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_3302 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_3303 PF02515 CoA-transferase family III Alide_3304 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3305 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alide_3306 PF08241 Methyltransferase domain Alide_3307 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Alide_3307 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Alide_3308 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Alide_3309 PF00005 ABC transporter Alide_3310 PF01032 FecCD transport family Alide_3311 PF01497 Periplasmic binding protein Alide_3312 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Alide_3313 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_3313 PF07685 CobB/CobQ-like glutamine amidotransferase domain Alide_3314 PF00593 TonB dependent receptor Alide_3314 PF07715 TonB-dependent Receptor Plug Domain Alide_3316 PF05164 Cell division protein ZapA Alide_3317 PF00563 EAL domain Alide_3317 PF00990 GGDEF domain Alide_3317 PF13188 PAS domain Alide_3317 PF13426 PAS domain Alide_3318 PF11871 Alide_3318 Alide_3318 PF13487 HD domain Alide_3319 PF13386 Alide_3319 Alide_3320 PF04055 Radical SAM superfamily Alide_3320 PF06969 HemN C-terminal domain Alide_3321 PF00027 Cyclic nucleotide-binding domain Alide_3321 PF13545 Crp-like helix-turn-helix domain Alide_3323 PF05751 Alide_3323 Alide_3324 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Alide_3324 PF12801 Alide_3324 Alide_3324 PF13746 4Fe-4S dicluster domain Alide_3325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_3325 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Alide_3326 PF05545 Alide_3326 Alide_3327 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO Alide_3328 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_3329 PF03597 Alide_3329 Alide_3330 PF00122 E1-E2 ATPase Alide_3330 PF00403 Heavy-metal-associated domain Alide_3330 PF00702 haloacid dehalogenase-like hydrolase Alide_3331 PF00582 Universal stress protein family Alide_3332 PF00501 AMP-binding enzyme Alide_3332 PF13193 AMP-binding enzyme C-terminal domain Alide_3333 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3334 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3335 PF05292 Malonyl-CoA decarboxylase (MCD) Alide_3335 PF17408 Alide_3335 Alide_3336 PF00392 Bacterial regulatory proteins, gntR family Alide_3336 PF07729 FCD domain Alide_3337 PF01790 Alide_3337 Alide_3338 PF00210 Ferritin-like domain Alide_3339 PF03061 Thioesterase superfamily Alide_3340 PF00920 Dehydratase family Alide_3341 PF00920 Dehydratase family Alide_3343 PF00034 Cytochrome c Alide_3344 PF00005 ABC transporter Alide_3345 PF02687 Alide_3345 Alide_3345 PF12704 MacB-like periplasmic core domain Alide_3347 PF01368 DHH family Alide_3347 PF02272 DHHA1 domain Alide_3348 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3348 PF00672 HAMP domain Alide_3349 PF02811 PHP domain Alide_3350 PF01300 Telomere recombination Alide_3351 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3353 PF00579 tRNA synthetases class I (W and Y) Alide_3353 PF07411 Domain of unknown function (DUF1508) Alide_3354 PF00072 Response regulator receiver domain Alide_3354 PF00486 Transcriptional regulatory protein, C terminal Alide_3355 PF01476 LysM domain Alide_3355 PF04773 FecR protein Alide_3356 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3356 PF05226 Alide_3356 Alide_3357 PF02397 Alide_3357 Alide_3359 PF01062 Alide_3359 Alide_3360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alide_3360 PF02403 Seryl-tRNA synthetase N-terminal domain Alide_3361 PF00571 CBS domain Alide_3362 PF00571 CBS domain Alide_3362 PF01595 Alide_3362 Alide_3362 PF03471 Transporter associated domain Alide_3363 PF02401 LytB protein Alide_3364 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide_3365 PF04002 RadC-like JAB domain Alide_3366 PF13449 Esterase-like activity of phytase Alide_3367 PF01713 Smr domain Alide_3368 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3369 PF00330 Aconitase family (aconitate hydratase) Alide_3370 PF00694 Aconitase C-terminal domain Alide_3371 PF13714 Phosphoenolpyruvate phosphomutase Alide_3372 PF00392 Bacterial regulatory proteins, gntR family Alide_3372 PF07702 UTRA domain Alide_3373 PF01152 Bacterial-like globin Alide_3374 PF01258 Prokaryotic dksA/traR C4-type zinc finger Alide_3375 PF13671 AAA domain Alide_3378 PF02634 FdhD/NarQ family Alide_3380 PF01292 Prokaryotic cytochrome b561 Alide_3382 PF13247 4Fe-4S dicluster domain Alide_3383 PF00384 Molybdopterin oxidoreductase Alide_3383 PF01568 Molydopterin dinucleotide binding domain Alide_3383 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide_3385 PF02613 Nitrate reductase delta subunit Alide_3386 PF00037 4Fe-4S binding domain Alide_3386 PF12838 4Fe-4S dicluster domain Alide_3386 PF13187 4Fe-4S dicluster domain Alide_3387 PF11748 Alide_3387 Alide_3388 PF11749 Alide_3388 Alide_3389 PF00384 Molybdopterin oxidoreductase Alide_3389 PF01568 Molydopterin dinucleotide binding domain Alide_3389 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide_3389 PF13187 4Fe-4S dicluster domain Alide_3389 PF13510 2Fe-2S iron-sulfur cluster binding domain Alide_3390 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Alide_3390 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alide_3390 PF10531 SLBB domain Alide_3390 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide_3391 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_3392 PF07690 Major Facilitator Superfamily Alide_3393 PF00392 Bacterial regulatory proteins, gntR family Alide_3393 PF07702 UTRA domain Alide_3394 PF02515 CoA-transferase family III Alide_3395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3395 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3396 PF03972 MmgE/PrpD family Alide_3397 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3398 PF01575 MaoC like domain Alide_3399 PF01883 Domain of unknown function DUF59 Alide_3399 PF10609 ParA/MinD ATPase like Alide_3400 PF03595 Voltage-dependent anion channel Alide_3401 PF00586 AIR synthase related protein, N-terminal domain Alide_3401 PF02769 AIR synthase related protein, C-terminal domain Alide_3402 PF00581 Rhodanese-like domain Alide_3403 PF04471 Restriction endonuclease Alide_3404 PF01734 Patatin-like phospholipase Alide_3405 PF01588 Putative tRNA binding domain Alide_3405 PF09334 tRNA synthetases class I (M) Alide_3407 PF00155 Aminotransferase class I and II Alide_3407 PF00392 Bacterial regulatory proteins, gntR family Alide_3408 PF03594 Alide_3408 Alide_3409 PF01168 Alanine racemase, N-terminal domain Alide_3410 PF00117 Glutamine amidotransferase class-I Alide_3411 PF12625 Alide_3411 Alide_3411 PF12833 Helix-turn-helix domain Alide_3412 PF00890 FAD binding domain Alide_3413 PF01070 FMN-dependent dehydrogenase Alide_3414 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_3414 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide_3416 PF11943 Alide_3416 Alide_3417 PF02616 ScpA/B protein Alide_3418 PF02627 Carboxymuconolactone decarboxylase family Alide_3419 PF12833 Helix-turn-helix domain Alide_3419 PF12852 Cupin Alide_3420 PF00890 FAD binding domain Alide_3420 PF02910 Fumarate reductase flavoprotein C-term Alide_3421 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase Alide_3422 PF00425 chorismate binding enzyme Alide_3422 PF01063 Aminotransferase class IV Alide_3423 PF02445 Quinolinate synthetase A protein Alide_3424 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Alide_3424 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Alide_3426 PF02548 Ketopantoate hydroxymethyltransferase Alide_3427 PF02569 Pantoate-beta-alanine ligase Alide_3428 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3428 PF03466 LysR substrate binding domain Alide_3429 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3430 PF07171 MlrC C-terminus Alide_3430 PF07364 Protein of unknown function (DUF1485) Alide_3431 PF01925 Alide_3431 Alide_3432 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3434 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Alide_3434 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Alide_3435 PF02556 Preprotein translocase subunit SecB Alide_3436 PF00462 Glutaredoxin Alide_3437 PF00581 Rhodanese-like domain Alide_3438 PF00300 Histidine phosphatase superfamily (branch 1) Alide_3439 PF03572 Peptidase family S41 Alide_3439 PF13180 PDZ domain Alide_3440 PF00899 ThiF family Alide_3441 PF00072 Response regulator receiver domain Alide_3442 PF00072 Response regulator receiver domain Alide_3442 PF00196 Bacterial regulatory proteins, luxR family Alide_3443 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3443 PF05227 CHASE3 domain Alide_3443 PF07730 Histidine kinase Alide_3444 PF07043 Alide_3444 Alide_3446 PF04972 BON domain Alide_3447 PF01467 Cytidylyltransferase Alide_3448 PF03602 Conserved hypothetical protein 95 Alide_3449 PF05193 Peptidase M16 inactive domain Alide_3450 PF00675 Insulinase (Peptidase family M16) Alide_3450 PF05193 Peptidase M16 inactive domain Alide_3451 PF00448 SRP54-type protein, GTPase domain Alide_3451 PF02881 SRP54-type protein, helical bundle domain Alide_3452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3452 PF03466 LysR substrate binding domain Alide_3453 PF00701 Dihydrodipicolinate synthetase family Alide_3454 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3455 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_3456 PF13378 Enolase C-terminal domain-like Alide_3457 PF03091 CutA1 divalent ion tolerance protein Alide_3458 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3459 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3460 PF00330 Aconitase family (aconitate hydratase) Alide_3460 PF00694 Aconitase C-terminal domain Alide_3461 PF00392 Bacterial regulatory proteins, gntR family Alide_3461 PF07729 FCD domain Alide_3462 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_3463 PF10282 Lactonase, 7-bladed beta-propeller Alide_3464 PF00107 Zinc-binding dehydrogenase Alide_3464 PF08240 Alcohol dehydrogenase GroES-like domain Alide_3466 PF00072 Response regulator receiver domain Alide_3466 PF00486 Transcriptional regulatory protein, C terminal Alide_3467 PF00512 His Kinase A (phospho-acceptor) domain Alide_3467 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3468 PF01988 Alide_3468 Alide_3469 PF01292 Prokaryotic cytochrome b561 Alide_3470 PF16576 Alide_3470 Alide_3471 PF00873 AcrB/AcrD/AcrF family Alide_3472 PF11582 Protein of unknown function (DUF3240) Alide_3473 PF02321 Outer membrane efflux protein Alide_3475 PF00140 Sigma-70 factor, region 1 Alide_3475 PF04542 Sigma-70 region 2 Alide_3475 PF04545 Sigma-70, region 4 Alide_3476 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3477 PF02630 SCO1/SenC Alide_3478 PF01040 UbiA prenyltransferase family Alide_3479 PF02628 Alide_3479 Alide_3481 PF02104 Alide_3481 Alide_3482 PF11137 Alide_3482 Alide_3483 PF00510 Cytochrome c oxidase subunit III Alide_3484 PF11174 Alide_3484 Alide_3485 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Alide_3487 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_3488 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Alide_3488 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Alide_3488 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_3490 PF00156 Phosphoribosyl transferase domain Alide_3491 PF00588 SpoU rRNA Methylase family Alide_3492 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3492 PF03466 LysR substrate binding domain Alide_3493 PF13663 Alide_3493 Alide_3494 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_3495 PF01810 Alide_3495 Alide_3496 PF00999 Sodium/hydrogen exchanger family Alide_3496 PF02254 TrkA-N domain Alide_3497 PF00392 Bacterial regulatory proteins, gntR family Alide_3497 PF07702 UTRA domain Alide_3498 PF13714 Phosphoenolpyruvate phosphomutase Alide_3499 PF00330 Aconitase family (aconitate hydratase) Alide_3500 PF00694 Aconitase C-terminal domain Alide_3501 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3502 PF04303 PrpF protein Alide_3503 PF03972 MmgE/PrpD family Alide_3504 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3505 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3506 PF01546 Peptidase family M20/M25/M40 Alide_3506 PF07687 Peptidase dimerisation domain Alide_3507 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3508 PF03466 LysR substrate binding domain Alide_3510 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3511 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_3512 PF00108 Thiolase, N-terminal domain Alide_3512 PF02803 Thiolase, C-terminal domain Alide_3513 PF01144 Coenzyme A transferase Alide_3514 PF01144 Coenzyme A transferase Alide_3515 PF01614 Bacterial transcriptional regulator Alide_3515 PF09339 IclR helix-turn-helix domain Alide_3516 PF08897 Alide_3516 Alide_3517 PF00582 Universal stress protein family Alide_3518 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_3519 PF00004 ATPase family associated with various cellular activities (AAA) Alide_3520 PF13302 Acetyltransferase (GNAT) domain Alide_3521 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3522 PF00392 Bacterial regulatory proteins, gntR family Alide_3522 PF07702 UTRA domain Alide_3523 PF02515 CoA-transferase family III Alide_3524 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3524 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3524 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3525 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3526 PF03972 MmgE/PrpD family Alide_3527 PF05762 VWA domain containing CoxE-like protein Alide_3528 PF01103 Surface antigen Alide_3528 PF17243 Alide_3528 Alide_3529 PF04357 Alide_3529 Alide_3532 PF13560 Helix-turn-helix domain Alide_3543 PF10145 Alide_3543 Alide_3547 PF03864 Phage major capsid protein E Alide_3548 PF02924 Bacteriophage lambda head decoration protein D Alide_3549 PF01343 Peptidase family S49 Alide_3550 PF05136 Alide_3550 Alide_3552 PF08765 Mor transcription activator family Alide_3553 PF05876 Alide_3553 Alide_3554 PF07471 Phage DNA packaging protein Nu1 Alide_3560 PF02195 ParB-like nuclease domain Alide_3564 PF06892 Alide_3564 Alide_3569 PF10709 Alide_3569 Alide_3579 PF10065 Alide_3579 Alide_3587 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Alide_3588 PF07505 Alide_3588 Alide_3590 PF00145 C-5 cytosine-specific DNA methylase Alide_3593 PF00589 Phage integrase family Alide_3599 PF01381 Helix-turn-helix Alide_3601 PF03432 Alide_3601 Alide_3603 PF02086 D12 class N6 adenine-specific DNA methyltransferase Alide_3605 PF00589 Phage integrase family Alide_3606 PF02628 Alide_3606 Alide_3609 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_3610 PF01040 UbiA prenyltransferase family Alide_3611 PF02630 SCO1/SenC Alide_3612 PF00033 Cytochrome b(N-terminal)/b6/petB Alide_3612 PF02662 Alide_3612 Alide_3612 PF12838 4Fe-4S dicluster domain Alide_3614 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide_3615 PF00033 Cytochrome b(N-terminal)/b6/petB Alide_3615 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide_3615 PF00175 Oxidoreductase NAD-binding domain Alide_3615 PF00970 Oxidoreductase FAD-binding domain Alide_3616 PF13091 PLD-like domain Alide_3617 PF00512 His Kinase A (phospho-acceptor) domain Alide_3617 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3618 PF00072 Response regulator receiver domain Alide_3618 PF00486 Transcriptional regulatory protein, C terminal Alide_3619 PF13180 PDZ domain Alide_3619 PF13365 Trypsin-like peptidase domain Alide_3620 PF03960 ArsC family Alide_3621 PF00528 Binding-protein-dependent transport system inner membrane component Alide_3622 PF00005 ABC transporter Alide_3622 PF08402 TOBE domain Alide_3623 PF01553 Acyltransferase Alide_3624 PF07969 Amidohydrolase family Alide_3625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Alide_3625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Alide_3626 PF00156 Phosphoribosyl transferase domain Alide_3627 PF03652 Uncharacterised protein family (UPF0081) Alide_3628 PF02622 Uncharacterized ACR, COG1678 Alide_3629 PF00072 Response regulator receiver domain Alide_3629 PF01584 CheW-like domain Alide_3629 PF01627 Hpt domain Alide_3629 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3629 PF02895 Signal transducing histidine kinase, homodimeric domain Alide_3630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3630 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Alide_3631 PF01584 CheW-like domain Alide_3632 PF00072 Response regulator receiver domain Alide_3633 PF00072 Response regulator receiver domain Alide_3634 PF00301 Rubredoxin Alide_3635 PF08543 Phosphomethylpyrimidine kinase Alide_3636 PF00202 Aminotransferase class-III Alide_3637 PF01808 AICARFT/IMPCHase bienzyme Alide_3637 PF02142 MGS-like domain Alide_3638 PF02954 Bacterial regulatory protein, Fis family Alide_3639 PF01207 Dihydrouridine synthase (Dus) Alide_3641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3641 PF03466 LysR substrate binding domain Alide_3642 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3643 PF07687 Peptidase dimerisation domain Alide_3644 PF01970 Alide_3644 Alide_3645 PF07331 Alide_3645 Alide_3646 PF00672 HAMP domain Alide_3646 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3647 PF00072 Response regulator receiver domain Alide_3647 PF00486 Transcriptional regulatory protein, C terminal Alide_3648 PF01926 50S ribosome-binding GTPase Alide_3648 PF06071 Protein of unknown function (DUF933) Alide_3649 PF01494 FAD binding domain Alide_3650 PF10411 Disulfide bond isomerase protein N-terminus Alide_3650 PF13098 Thioredoxin-like domain Alide_3651 PF05299 M61 glycyl aminopeptidase Alide_3652 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3654 PF00919 Uncharacterized protein family UPF0004 Alide_3654 PF01938 TRAM domain Alide_3654 PF04055 Radical SAM superfamily Alide_3655 PF00448 SRP54-type protein, GTPase domain Alide_3655 PF02881 SRP54-type protein, helical bundle domain Alide_3655 PF02978 Signal peptide binding domain Alide_3656 PF01578 Alide_3656 Alide_3658 PF00512 His Kinase A (phospho-acceptor) domain Alide_3658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3658 PF13188 PAS domain Alide_3659 PF00072 Response regulator receiver domain Alide_3659 PF00158 Sigma-54 interaction domain Alide_3659 PF02954 Bacterial regulatory protein, Fis family Alide_3660 PF01510 N-acetylmuramoyl-L-alanine amidase Alide_3661 PF00317 Ribonucleotide reductase, all-alpha domain Alide_3661 PF02867 Ribonucleotide reductase, barrel domain Alide_3661 PF03477 ATP cone domain Alide_3662 PF00268 Ribonucleotide reductase, small chain Alide_3664 PF00294 pfkB family carbohydrate kinase Alide_3665 PF11906 Alide_3665 Alide_3665 PF13719 Alide_3665 Alide_3666 PF06325 Ribosomal protein L11 methyltransferase (PrmA) Alide_3667 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Alide_3667 PF02785 Biotin carboxylase C-terminal domain Alide_3667 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_3668 PF00364 Biotin-requiring enzyme Alide_3669 PF08534 Redoxin Alide_3671 PF01225 Mur ligase family, catalytic domain Alide_3671 PF02875 Mur ligase family, glutamate ligase domain Alide_3671 PF08245 Mur ligase middle domain Alide_3673 PF00793 DAHP synthetase I family Alide_3674 PF01523 Putative modulator of DNA gyrase Alide_3675 PF01098 Alide_3675 Alide_3676 PF05728 Uncharacterised protein family (UPF0227) Alide_3677 PF04932 Alide_3677 Alide_3677 PF11846 Alide_3677 Alide_3677 PF15864 Alide_3677 Alide_3678 PF00034 Cytochrome c Alide_3679 PF13668 Ferritin-like domain Alide_3680 PF04542 Sigma-70 region 2 Alide_3680 PF08281 Sigma-70, region 4 Alide_3681 PF00773 RNB domain Alide_3682 PF13103 TonB C terminal Alide_3683 PF01488 Shikimate / quinate 5-dehydrogenase Alide_3683 PF08501 Shikimate dehydrogenase substrate binding domain Alide_3684 PF00912 Transglycosylase Alide_3686 PF13683 Alide_3686 Alide_3687 PF01527 Transposase Alide_3688 PF02075 Crossover junction endodeoxyribonuclease RuvC Alide_3689 PF01638 HxlR-like helix-turn-helix Alide_3690 PF08241 Methyltransferase domain Alide_3691 PF01964 ThiC family Alide_3691 PF13667 ThiC-associated domain Alide_3693 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Alide_3694 PF09339 IclR helix-turn-helix domain Alide_3695 PF04199 Putative cyclase Alide_3696 PF00501 AMP-binding enzyme Alide_3696 PF13193 AMP-binding enzyme C-terminal domain Alide_3697 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_3698 PF13458 Periplasmic binding protein Alide_3699 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3700 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3701 PF00091 Tubulin/FtsZ family, GTPase domain Alide_3701 PF12327 FtsZ family, C-terminal domain Alide_3702 PF02491 SHS2 domain inserted in FTSA Alide_3702 PF14450 Cell division protein FtsA Alide_3703 PF03799 Cell division protein FtsQ Alide_3703 PF08478 POTRA domain, FtsQ-type Alide_3704 PF01820 D-ala D-ala ligase N-terminus Alide_3704 PF07478 D-ala D-ala ligase C-terminus Alide_3705 PF01225 Mur ligase family, catalytic domain Alide_3705 PF02875 Mur ligase family, glutamate ligase domain Alide_3705 PF08245 Mur ligase middle domain Alide_3706 PF03033 Glycosyltransferase family 28 N-terminal domain Alide_3706 PF04101 Glycosyltransferase family 28 C-terminal domain Alide_3707 PF01098 Alide_3707 Alide_3708 PF02875 Mur ligase family, glutamate ligase domain Alide_3708 PF08245 Mur ligase middle domain Alide_3709 PF00953 Glycosyl transferase family 4 Alide_3709 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Alide_3710 PF01225 Mur ligase family, catalytic domain Alide_3710 PF02875 Mur ligase family, glutamate ligase domain Alide_3710 PF08245 Mur ligase middle domain Alide_3711 PF01225 Mur ligase family, catalytic domain Alide_3711 PF02875 Mur ligase family, glutamate ligase domain Alide_3711 PF08245 Mur ligase middle domain Alide_3712 PF00905 Penicillin binding protein transpeptidase domain Alide_3712 PF03717 Penicillin-binding Protein dimerisation domain Alide_3713 PF04999 Alide_3713 Alide_3714 PF01795 MraW methylase family Alide_3715 PF02381 MraZ protein Alide_3716 PF00004 ATPase family associated with various cellular activities (AAA) Alide_3716 PF07724 AAA domain (Cdc48 subfamily) Alide_3716 PF10431 C-terminal, D2-small domain, of ClpB protein Alide_3717 PF00227 Proteasome subunit Alide_3718 PF13466 STAS domain Alide_3719 PF01258 Prokaryotic dksA/traR C4-type zinc finger Alide_3720 PF02492 CobW/HypB/UreG, nucleotide-binding domain Alide_3720 PF07683 Cobalamin synthesis protein cobW C-terminal domain Alide_3721 PF00072 Response regulator receiver domain Alide_3721 PF11534 Hexameric tyrosine-coordinated heme protein (HTHP) Alide_3722 PF00072 Response regulator receiver domain Alide_3722 PF12728 Helix-turn-helix domain Alide_3723 PF00072 Response regulator receiver domain Alide_3725 PF00072 Response regulator receiver domain Alide_3725 PF12728 Helix-turn-helix domain Alide_3726 PF00072 Response regulator receiver domain Alide_3727 PF13487 HD domain Alide_3728 PF00512 His Kinase A (phospho-acceptor) domain Alide_3728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3728 PF08448 PAS fold Alide_3729 PF00512 His Kinase A (phospho-acceptor) domain Alide_3729 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_3730 PF00672 HAMP domain Alide_3730 PF12729 Alide_3730 Alide_3731 PF00589 Phage integrase family Alide_3731 PF02899 Phage integrase, N-terminal SAM-like domain Alide_3732 PF04340 Protein of unknown function, DUF484 Alide_3733 PF01678 Diaminopimelate epimerase Alide_3734 PF00753 Metallo-beta-lactamase superfamily Alide_3735 PF01479 S4 domain Alide_3737 PF00291 Pyridoxal-phosphate dependent enzyme Alide_3740 PF02627 Carboxymuconolactone decarboxylase family Alide_3741 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3741 PF03466 LysR substrate binding domain Alide_3742 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide_3743 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3744 PF02515 CoA-transferase family III Alide_3745 PF04909 Amidohydrolase Alide_3746 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3747 PF12802 MarR family Alide_3748 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_3749 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3750 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3751 PF00501 AMP-binding enzyme Alide_3751 PF13193 AMP-binding enzyme C-terminal domain Alide_3752 PF00766 Electron transfer flavoprotein FAD-binding domain Alide_3752 PF01012 Electron transfer flavoprotein domain Alide_3753 PF01012 Electron transfer flavoprotein domain Alide_3754 PF03060 Nitronate monooxygenase Alide_3755 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3756 PF02515 CoA-transferase family III Alide_3757 PF03061 Thioesterase superfamily Alide_3758 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3759 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3759 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3759 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3760 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3761 PF00108 Thiolase, N-terminal domain Alide_3761 PF02803 Thiolase, C-terminal domain Alide_3762 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3762 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide_3762 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide_3763 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3763 PF03466 LysR substrate binding domain Alide_3764 PF06627 Protein of unknown function (DUF1153) Alide_3768 PF01527 Transposase Alide_3769 PF00665 Integrase core domain Alide_3769 PF13276 Alide_3769 Alide_3770 PF13683 Alide_3770 Alide_3771 PF01527 Transposase Alide_3774 PF03050 Alide_3774 Alide_3774 PF13005 Alide_3774 Alide_3774 PF13007 Alide_3774 Alide_3774 PF13817 Alide_3774 Alide_3775 PF05717 Alide_3775 Alide_3776 PF01527 Transposase Alide_3777 PF01435 Peptidase family M48 Alide_3778 PF11227 Alide_3778 Alide_3779 PF01979 Amidohydrolase family Alide_3781 PF04343 Alide_3781 Alide_3782 PF02627 Carboxymuconolactone decarboxylase family Alide_3784 PF13458 Periplasmic binding protein Alide_3786 PF13609 Gram-negative porin Alide_3787 PF00083 Sugar (and other) transporter Alide_3788 PF04341 Alide_3788 Alide_3789 PF00474 Sodium:solute symporter family Alide_3790 PF00929 Exonuclease Alide_3791 PF00571 CBS domain Alide_3791 PF03445 Alide_3791 Alide_3791 PF10335 Alide_3791 Alide_3792 PF01323 DSBA-like thioredoxin domain Alide_3793 PF06945 Alide_3793 Alide_3794 PF04073 Aminoacyl-tRNA editing domain Alide_3795 PF00682 HMGL-like Alide_3796 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide_3797 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Alide_3797 PF00364 Biotin-requiring enzyme Alide_3797 PF02785 Biotin carboxylase C-terminal domain Alide_3797 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_3798 PF13548 Alide_3798 Alide_3799 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3800 PF01039 Carboxyl transferase domain Alide_3801 PF00501 AMP-binding enzyme Alide_3801 PF13193 AMP-binding enzyme C-terminal domain Alide_3802 PF12625 Alide_3802 Alide_3802 PF12833 Helix-turn-helix domain Alide_3803 PF13417 Glutathione S-transferase, N-terminal domain Alide_3803 PF14497 Glutathione S-transferase, C-terminal domain Alide_3804 PF00732 GMC oxidoreductase Alide_3804 PF05199 GMC oxidoreductase Alide_3805 PF13458 Periplasmic binding protein Alide_3806 PF02653 Alide_3806 Alide_3807 PF00005 ABC transporter Alide_3807 PF02653 Alide_3807 Alide_3807 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_3808 PF00005 ABC transporter Alide_3809 PF00732 GMC oxidoreductase Alide_3809 PF05199 GMC oxidoreductase Alide_3810 PF00501 AMP-binding enzyme Alide_3810 PF13193 AMP-binding enzyme C-terminal domain Alide_3811 PF00155 Aminotransferase class I and II Alide_3811 PF00392 Bacterial regulatory proteins, gntR family Alide_3812 PF00368 Hydroxymethylglutaryl-coenzyme A reductase Alide_3813 PF13419 Haloacid dehalogenase-like hydrolase Alide_3814 PF00990 GGDEF domain Alide_3814 PF08447 PAS fold Alide_3815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_3817 PF00563 EAL domain Alide_3817 PF00990 GGDEF domain Alide_3817 PF07695 Alide_3817 Alide_3819 PF13852 Alide_3819 Alide_3820 PF04239 Protein of unknown function (DUF421) Alide_3821 PF09339 IclR helix-turn-helix domain Alide_3822 PF03575 Peptidase family S51 Alide_3823 PF06675 Alide_3823 Alide_3824 PF07302 Alide_3824 Alide_3825 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3828 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3828 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3828 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3829 PF00106 short chain dehydrogenase Alide_3830 PF00108 Thiolase, N-terminal domain Alide_3830 PF02803 Thiolase, C-terminal domain Alide_3831 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Alide_3832 PF00484 Carbonic anhydrase Alide_3833 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_3833 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_3833 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_3834 PF13411 MerR HTH family regulatory protein Alide_3835 PF00005 ABC transporter Alide_3835 PF12848 ABC transporter Alide_3835 PF16326 Alide_3835 Alide_3836 PF00072 Response regulator receiver domain Alide_3836 PF01339 CheB methylesterase Alide_3837 PF03975 CheD chemotactic sensory transduction Alide_3838 PF01739 CheR methyltransferase, SAM binding domain Alide_3838 PF03705 CheR methyltransferase, all-alpha domain Alide_3839 PF01584 CheW-like domain Alide_3840 PF01584 CheW-like domain Alide_3840 PF01627 Hpt domain Alide_3840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3840 PF02895 Signal transducing histidine kinase, homodimeric domain Alide_3841 PF00072 Response regulator receiver domain Alide_3843 PF00072 Response regulator receiver domain Alide_3843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_3843 PF07730 Histidine kinase Alide_3844 PF00072 Response regulator receiver domain Alide_3844 PF00196 Bacterial regulatory proteins, luxR family Alide_3845 PF01311 Alide_3845 Alide_3846 PF01313 Alide_3846 Alide_3847 PF00813 Alide_3847 Alide_3848 PF04347 Alide_3848 Alide_3849 PF01052 Surface presentation of antigens (SPOA) Alide_3850 PF01052 Surface presentation of antigens (SPOA) Alide_3850 PF02154 Flagellar motor switch protein FliM Alide_3851 PF03748 Alide_3851 Alide_3852 PF02120 Flagellar hook-length control protein FliK Alide_3853 PF02050 Flagellar FliJ protein Alide_3854 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide_3854 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alide_3855 PF02108 Alide_3855 Alide_3856 PF01706 FliG C-terminal domain Alide_3856 PF14841 FliG middle domain Alide_3856 PF14842 FliG N-terminal domain Alide_3857 PF01514 Secretory protein of YscJ/FliF family Alide_3857 PF08345 Alide_3857 Alide_3858 PF02049 Alide_3858 Alide_3859 PF05400 Flagellar protein FliT Alide_3860 PF02561 Flagellar protein FliS Alide_3861 PF02465 Alide_3861 Alide_3861 PF07195 Alide_3861 Alide_3861 PF07196 Flagellin hook IN motif Alide_3862 PF00669 Bacterial flagellin N-terminal helical region Alide_3862 PF00700 Bacterial flagellin C-terminal helical region Alide_3862 PF07196 Flagellin hook IN motif Alide_3863 PF00669 Bacterial flagellin N-terminal helical region Alide_3863 PF00700 Bacterial flagellin C-terminal helical region Alide_3863 PF07196 Flagellin hook IN motif Alide_3864 PF00535 Glycosyl transferase family 2 Alide_3864 PF05159 Alide_3864 Alide_3864 PF14307 Alide_3864 Alide_3865 PF02348 Cytidylyltransferase Alide_3865 PF03737 Demethylmenaquinone methyltransferase Alide_3866 PF01618 Alide_3866 Alide_3867 PF00691 OmpA family Alide_3867 PF13677 Alide_3867 Alide_3868 PF00072 Response regulator receiver domain Alide_3869 PF04344 Chemotaxis phosphatase, CheZ Alide_3870 PF01312 FlhB HrpN YscU SpaS Family Alide_3871 PF00771 FHIPEP family Alide_3872 PF00448 SRP54-type protein, GTPase domain Alide_3874 PF04539 Sigma-70 region 3 Alide_3874 PF04542 Sigma-70 region 2 Alide_3874 PF04545 Sigma-70, region 4 Alide_3876 PF04316 Anti-sigma-28 factor, FlgM Alide_3877 PF13144 SAF-like Alide_3878 PF00460 Flagella basal body rod protein Alide_3879 PF00460 Flagella basal body rod protein Alide_3879 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_3880 PF03963 Alide_3880 Alide_3880 PF13860 FlgD Ig-like domain Alide_3880 PF13861 FlgD Tudor-like domain Alide_3881 PF00460 Flagella basal body rod protein Alide_3881 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_3881 PF07559 Flagellar basal body protein FlaE Alide_3882 PF00460 Flagella basal body rod protein Alide_3882 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_3883 PF00460 Flagella basal body rod protein Alide_3883 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_3884 PF02107 Alide_3884 Alide_3885 PF02119 Alide_3885 Alide_3886 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Alide_3886 PF10135 Alide_3886 Alide_3887 PF00460 Flagella basal body rod protein Alide_3887 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_3888 PF00669 Bacterial flagellin N-terminal helical region Alide_3889 PF08668 HDOD domain Alide_3890 PF03060 Nitronate monooxygenase Alide_3891 PF00155 Aminotransferase class I and II Alide_3891 PF00392 Bacterial regulatory proteins, gntR family Alide_3892 PF01810 Alide_3892 Alide_3893 PF00892 EamA-like transporter family Alide_3894 PF00155 Aminotransferase class I and II Alide_3895 PF02567 Phenazine biosynthesis-like protein Alide_3896 PF00291 Pyridoxal-phosphate dependent enzyme Alide_3897 PF04199 Putative cyclase Alide_3898 PF13458 Periplasmic binding protein Alide_3899 PF01370 NAD dependent epimerase/dehydratase family Alide_3900 PF00300 Histidine phosphatase superfamily (branch 1) Alide_3901 PF00990 GGDEF domain Alide_3902 PF07987 Domain of unkown function (DUF1775) Alide_3903 PF00593 TonB dependent receptor Alide_3903 PF07715 TonB-dependent Receptor Plug Domain Alide_3905 PF02633 Creatinine amidohydrolase Alide_3906 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3907 PF02683 Alide_3907 Alide_3907 PF11412 Disulphide bond corrector protein DsbC Alide_3907 PF13899 Thioredoxin-like Alide_3908 PF00578 AhpC/TSA family Alide_3909 PF01925 Alide_3909 Alide_3910 PF01471 Putative peptidoglycan binding domain Alide_3910 PF03734 L,D-transpeptidase catalytic domain Alide_3911 PF01208 Uroporphyrinogen decarboxylase (URO-D) Alide_3912 PF00270 DEAD/DEAH box helicase Alide_3912 PF00271 Helicase conserved C-terminal domain Alide_3913 PF00108 Thiolase, N-terminal domain Alide_3913 PF02803 Thiolase, C-terminal domain Alide_3914 PF00378 Enoyl-CoA hydratase/isomerase family Alide_3917 PF00005 ABC transporter Alide_3918 PF13458 Periplasmic binding protein Alide_3919 PF02653 Alide_3919 Alide_3920 PF02653 Alide_3920 Alide_3921 PF00005 ABC transporter Alide_3921 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_3922 PF00440 Bacterial regulatory proteins, tetR family Alide_3923 PF03547 Alide_3923 Alide_3924 PF00580 UvrD/REP helicase N-terminal domain Alide_3924 PF13361 UvrD-like helicase C-terminal domain Alide_3926 PF02253 Phospholipase A1 Alide_3927 PF03781 Sulfatase-modifying factor enzyme 1 Alide_3928 PF00884 Sulfatase Alide_3929 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_3930 PF01494 FAD binding domain Alide_3931 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide_3932 PF13609 Gram-negative porin Alide_3933 PF00392 Bacterial regulatory proteins, gntR family Alide_3933 PF07729 FCD domain Alide_3935 PF00582 Universal stress protein family Alide_3936 PF01702 Queuine tRNA-ribosyltransferase Alide_3938 PF00989 PAS fold Alide_3939 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide_3940 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3941 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3942 PF03737 Demethylmenaquinone methyltransferase Alide_3943 PF00392 Bacterial regulatory proteins, gntR family Alide_3943 PF07729 FCD domain Alide_3944 PF01553 Acyltransferase Alide_3944 PF07690 Major Facilitator Superfamily Alide_3945 PF00004 ATPase family associated with various cellular activities (AAA) Alide_3945 PF01434 Peptidase family M41 Alide_3945 PF06480 FtsH Extracellular Alide_3946 PF00156 Phosphoribosyl transferase domain Alide_3947 PF00156 Phosphoribosyl transferase domain Alide_3949 PF08240 Alcohol dehydrogenase GroES-like domain Alide_3950 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3951 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Alide_3952 PF02627 Carboxymuconolactone decarboxylase family Alide_3953 PF08495 Alide_3953 Alide_3953 PF10442 Alide_3953 Alide_3955 PF00216 Bacterial DNA-binding protein Alide_3956 PF13350 Tyrosine phosphatase family Alide_3957 PF01196 Ribosomal protein L17 Alide_3958 PF01000 RNA polymerase Rpb3/RpoA insert domain Alide_3958 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Alide_3958 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Alide_3959 PF00163 Ribosomal protein S4/S9 N-terminal domain Alide_3959 PF01479 S4 domain Alide_3960 PF00411 Ribosomal protein S11 Alide_3961 PF00416 Ribosomal protein S13/S18 Alide_3962 PF00444 Ribosomal protein L36 Alide_3963 PF00344 SecY translocase Alide_3964 PF00828 Ribosomal protein L18e/L15 Alide_3965 PF00327 Ribosomal protein L30p/L7e Alide_3966 PF00333 Ribosomal protein S5, N-terminal domain Alide_3966 PF03719 Ribosomal protein S5, C-terminal domain Alide_3967 PF00861 Ribosomal L18p/L5e family Alide_3968 PF00347 Ribosomal protein L6 Alide_3969 PF00410 Ribosomal protein S8 Alide_3970 PF00253 Ribosomal protein S14p/S29e Alide_3971 PF00281 Ribosomal protein L5 Alide_3971 PF00673 ribosomal L5P family C-terminus Alide_3972 PF00467 KOW motif Alide_3972 PF17136 Alide_3972 Alide_3973 PF00238 Ribosomal protein L14p/L23e Alide_3974 PF01266 FAD dependent oxidoreductase Alide_3974 PF16901 Alide_3974 Alide_3975 PF00455 Alide_3975 Alide_3975 PF08220 DeoR-like helix-turn-helix domain Alide_3976 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Alide_3976 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Alide_3977 PF03807 NADP oxidoreductase coenzyme F420-dependent Alide_3977 PF14748 Pyrroline-5-carboxylate reductase dimerisation Alide_3978 PF08757 Alide_3978 Alide_3979 PF01040 UbiA prenyltransferase family Alide_3980 PF00210 Ferritin-like domain Alide_3981 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3981 PF03466 LysR substrate binding domain Alide_3982 PF00270 DEAD/DEAH box helicase Alide_3982 PF00271 Helicase conserved C-terminal domain Alide_3982 PF17191 Alide_3982 Alide_3983 PF01966 HD domain Alide_3983 PF11871 Alide_3983 Alide_3984 PF02547 Queuosine biosynthesis protein Alide_3985 PF00892 EamA-like transporter family Alide_3986 PF01019 Gamma-glutamyltranspeptidase Alide_3987 PF03401 Tripartite tricarboxylate transporter family receptor Alide_3988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_3988 PF03466 LysR substrate binding domain Alide_3989 PF03167 Uracil DNA glycosylase superfamily Alide_3990 PF00218 Indole-3-glycerol phosphate synthase Alide_3992 PF00591 Glycosyl transferase family, a/b domain Alide_3992 PF02885 Glycosyl transferase family, helical bundle domain Alide_3993 PF00117 Glutamine amidotransferase class-I Alide_3995 PF05930 Prophage CP4-57 regulatory protein (AlpA) Alide_3996 PF13614 AAA domain Alide_3999 PF11198 Alide_3999 Alide_4001 PF08900 Alide_4001 Alide_4002 PF11358 Alide_4002 Alide_4003 PF00436 Single-strand binding protein family Alide_4004 PF01131 DNA topoisomerase Alide_4004 PF01751 Toprim domain Alide_4005 PF01695 IstB-like ATP binding protein Alide_4006 PF00665 Integrase core domain Alide_4011 PF00271 Helicase conserved C-terminal domain Alide_4015 PF01464 Transglycosylase SLT domain Alide_4016 PF11072 Alide_4016 Alide_4017 PF12696 TraM recognition site of TraD and TraG Alide_4018 PF14348 Alide_4018 Alide_4019 PF09686 Alide_4019 Alide_4020 PF11660 Alide_4020 Alide_4021 PF11190 Alide_4021 Alide_4022 PF11990 Alide_4022 Alide_4023 PF11444 Alide_4023 Alide_4024 PF11920 Alide_4024 Alide_4027 PF11130 Alide_4027 Alide_4028 PF13462 Thioredoxin Alide_4029 PF04002 RadC-like JAB domain Alide_4030 PF07511 Alide_4030 Alide_4031 PF06834 Alide_4031 Alide_4034 PF07916 Alide_4034 Alide_4035 PF12553 Alide_4035 Alide_4036 PF08808 Alide_4036 Alide_4038 PF07514 Putative helicase Alide_4038 PF07515 Protein of unknown function (DUF1528) Alide_4039 PF13521 AAA domain Alide_4042 PF12697 Alpha/beta hydrolase family Alide_4043 PF13387 Alide_4043 Alide_4044 PF00665 Integrase core domain Alide_4045 PF01695 IstB-like ATP binding protein Alide_4048 PF08808 Alide_4048 Alide_4049 PF09722 Alide_4049 Alide_4050 PF01817 Chorismate mutase type II Alide_4051 PF00425 chorismate binding enzyme Alide_4051 PF04715 Anthranilate synthase component I, N terminal region Alide_4052 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_4052 PF00672 HAMP domain Alide_4052 PF12729 Alide_4052 Alide_4053 PF00563 EAL domain Alide_4053 PF00672 HAMP domain Alide_4053 PF00989 PAS fold Alide_4053 PF00990 GGDEF domain Alide_4053 PF13426 PAS domain Alide_4053 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Alide_4054 PF13419 Haloacid dehalogenase-like hydrolase Alide_4056 PF00834 Ribulose-phosphate 3 epimerase family Alide_4057 PF04379 Protein of unknown function (DUF525) Alide_4058 PF10136 Alide_4058 Alide_4059 PF00999 Sodium/hydrogen exchanger family Alide_4060 PF04107 Glutamate-cysteine ligase family 2(GCS2) Alide_4061 PF00586 AIR synthase related protein, N-terminal domain Alide_4061 PF02769 AIR synthase related protein, C-terminal domain Alide_4062 PF00440 Bacterial regulatory proteins, tetR family Alide_4063 PF07167 Alide_4063 Alide_4063 PF12551 Alide_4063 Alide_4064 PF02321 Outer membrane efflux protein Alide_4065 PF13437 HlyD family secretion protein Alide_4066 PF00005 ABC transporter Alide_4066 PF12698 ABC-2 family transporter protein Alide_4067 PF12698 ABC-2 family transporter protein Alide_4068 PF01515 Phosphate acetyl/butaryl transferase Alide_4068 PF01575 MaoC like domain Alide_4069 PF00871 Acetokinase family Alide_4070 PF04608 Phosphatidylglycerophosphatase A Alide_4071 PF02464 Competence-damaged protein Alide_4072 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_4072 PF00672 HAMP domain Alide_4072 PF02203 Tar ligand binding domain homologue Alide_4073 PF00563 EAL domain Alide_4073 PF00672 HAMP domain Alide_4073 PF00990 GGDEF domain Alide_4073 PF02203 Tar ligand binding domain homologue Alide_4074 PF00072 Response regulator receiver domain Alide_4074 PF03861 ANTAR domain Alide_4075 PF07568 Alide_4075 Alide_4075 PF13426 PAS domain Alide_4076 PF02810 SEC-C motif Alide_4076 PF03695 Uncharacterised protein family (UPF0149) Alide_4077 PF13470 Alide_4077 Alide_4078 PF01170 Putative RNA methylase family UPF0020 Alide_4078 PF02926 THUMP domain Alide_4079 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_4079 PF00672 HAMP domain Alide_4079 PF02743 Cache domain Alide_4080 PF13279 Thioesterase-like superfamily Alide_4081 PF00309 Alide_4081 Alide_4081 PF04552 Sigma-54, DNA binding domain Alide_4081 PF04963 Sigma-54 factor, core binding domain Alide_4082 PF00005 ABC transporter Alide_4082 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_4083 PF03968 OstA-like protein Alide_4084 PF01323 DSBA-like thioredoxin domain Alide_4085 PF05036 Sporulation related domain Alide_4086 PF00750 tRNA synthetases class I (R) Alide_4086 PF03485 Arginyl tRNA synthetase N terminal domain Alide_4086 PF05746 DALR anticodon binding domain Alide_4087 PF07769 Alide_4087 Alide_4088 PF09980 Alide_4088 Alide_4089 PF00375 Sodium:dicarboxylate symporter family Alide_4090 PF00072 Response regulator receiver domain Alide_4090 PF00512 His Kinase A (phospho-acceptor) domain Alide_4090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_4090 PF02743 Cache domain Alide_4090 PF12860 Alide_4090 Alide_4091 PF00072 Response regulator receiver domain Alide_4091 PF00196 Bacterial regulatory proteins, luxR family Alide_4092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4092 PF03466 LysR substrate binding domain Alide_4093 PF01274 Malate synthase Alide_4094 PF14375 Alide_4094 Alide_4095 PF01361 Tautomerase enzyme Alide_4096 PF02596 Alide_4096 Alide_4097 PF13230 Glutamine amidotransferases class-II Alide_4098 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Alide_4098 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Alide_4099 PF03594 Alide_4099 Alide_4100 PF02705 Alide_4100 Alide_4101 PF08886 Glutamate-cysteine ligase Alide_4102 PF02386 Cation transport protein Alide_4103 PF02080 TrkA-C domain Alide_4103 PF02254 TrkA-N domain Alide_4104 PF00171 Aldehyde dehydrogenase family Alide_4107 PF01400 Astacin (Peptidase family M12A) Alide_4109 PF06144 DNA polymerase III, delta subunit Alide_4110 PF04390 Lipopolysaccharide-assembly Alide_4111 PF00133 tRNA synthetases class I (I, L, M and V) Alide_4111 PF08264 Anticodon-binding domain of tRNA Alide_4111 PF09334 tRNA synthetases class I (M) Alide_4111 PF13603 Leucyl-tRNA synthetase, Domain 2 Alide_4112 PF00924 Mechanosensitive ion channel Alide_4113 PF00171 Aldehyde dehydrogenase family Alide_4115 PF00158 Sigma-54 interaction domain Alide_4115 PF01590 GAF domain Alide_4115 PF02954 Bacterial regulatory protein, Fis family Alide_4116 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide_4117 PF00563 EAL domain Alide_4117 PF00989 PAS fold Alide_4117 PF00990 GGDEF domain Alide_4117 PF13185 GAF domain Alide_4118 PF02472 Biopolymer transport protein ExbD/TolR Alide_4119 PF01618 Alide_4119 Alide_4120 PF01113 Dihydrodipicolinate reductase, N-terminus Alide_4120 PF05173 Dihydrodipicolinate reductase, C-terminus Alide_4121 PF04355 SmpA / OmlA family Alide_4122 PF01475 Ferric uptake regulator family Alide_4123 PF02603 HPr Serine kinase N terminus Alide_4123 PF07475 HPr Serine kinase C-terminal domain Alide_4124 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Alide_4125 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Alide_4126 PF01259 SAICAR synthetase Alide_4127 PF00085 Thioredoxin Alide_4127 PF14559 Tetratricopeptide repeat Alide_4127 PF14561 Tetratricopeptide repeat Alide_4128 PF00731 AIR carboxylase Alide_4129 PF02222 ATP-grasp domain Alide_4130 PF01300 Telomere recombination Alide_4130 PF03481 Putative GTP-binding controlling metal-binding Alide_4131 PF00657 GDSL-like Lipase/Acylhydrolase Alide_4133 PF03008 Alide_4133 Alide_4134 PF13091 PLD-like domain Alide_4135 PF13280 Alide_4135 Alide_4139 PF12760 Transposase zinc-ribbon domain Alide_4139 PF12762 Alide_4139 Alide_4140 PF01609 Transposase DDE domain Alide_4140 PF05598 Alide_4140 Alide_4142 PF15780 Alide_4142 Alide_4144 PF03922 OmpW family Alide_4146 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Alide_4147 PF00814 Glycoprotease family Alide_4148 PF00583 Acetyltransferase (GNAT) family Alide_4149 PF03167 Uracil DNA glycosylase superfamily Alide_4150 PF01544 CorA-like Mg2+ transporter protein Alide_4153 PF01048 Phosphorylase superfamily Alide_4154 PF00501 AMP-binding enzyme Alide_4154 PF13193 AMP-binding enzyme C-terminal domain Alide_4155 PF02233 NAD(P) transhydrogenase beta subunit Alide_4156 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Alide_4156 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Alide_4156 PF12769 Domain of unknown function (DUF3814) Alide_4158 PF01116 Fructose-bisphosphate aldolase class-II Alide_4159 PF00224 Pyruvate kinase, barrel domain Alide_4159 PF02887 Pyruvate kinase, alpha/beta domain Alide_4160 PF00557 Metallopeptidase family M24 Alide_4160 PF05195 Aminopeptidase P, N-terminal domain Alide_4161 PF00378 Enoyl-CoA hydratase/isomerase family Alide_4162 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4163 PF02515 CoA-transferase family III Alide_4164 PF02803 Thiolase, C-terminal domain Alide_4165 PF01796 Alide_4165 Alide_4165 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) Alide_4166 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4167 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4167 PF03466 LysR substrate binding domain Alide_4168 PF12804 MobA-like NTP transferase domain Alide_4169 PF00456 Transketolase, thiamine diphosphate binding domain Alide_4169 PF02779 Transketolase, pyrimidine binding domain Alide_4169 PF02780 Transketolase, C-terminal domain Alide_4170 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Alide_4170 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Alide_4171 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Alide_4172 PF07722 Peptidase C26 Alide_4173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4173 PF03466 LysR substrate binding domain Alide_4174 PF04909 Amidohydrolase Alide_4175 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_4176 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4177 PF02627 Carboxymuconolactone decarboxylase family Alide_4179 PF03929 Alide_4179 Alide_4180 PF00593 TonB dependent receptor Alide_4180 PF07715 TonB-dependent Receptor Plug Domain Alide_4182 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4184 PF07287 Alide_4184 Alide_4185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4185 PF03466 LysR substrate binding domain Alide_4186 PF06445 GyrI-like small molecule binding domain Alide_4187 PF00106 short chain dehydrogenase Alide_4189 PF03942 Alide_4189 Alide_4190 PF01614 Bacterial transcriptional regulator Alide_4190 PF09339 IclR helix-turn-helix domain Alide_4191 PF00108 Thiolase, N-terminal domain Alide_4192 PF01796 Alide_4192 Alide_4192 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) Alide_4193 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4194 PF13380 CoA binding domain Alide_4194 PF13549 ATP-grasp domain Alide_4194 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_4195 PF00043 Glutathione S-transferase, C-terminal domain Alide_4195 PF02798 Glutathione S-transferase, N-terminal domain Alide_4196 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_4197 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide_4198 PF01131 DNA topoisomerase Alide_4198 PF01751 Toprim domain Alide_4198 PF02201 SWIB/MDM2 domain Alide_4198 PF13342 Alide_4198 Alide_4199 PF00856 SET domain Alide_4200 PF02237 Biotin protein ligase C terminal domain Alide_4200 PF03099 Biotin/lipoate A/B protein ligase family Alide_4202 PF00107 Zinc-binding dehydrogenase Alide_4202 PF08240 Alcohol dehydrogenase GroES-like domain Alide_4203 PF01575 MaoC like domain Alide_4204 PF13452 N-terminal half of MaoC dehydratase Alide_4205 PF13458 Periplasmic binding protein Alide_4206 PF00501 AMP-binding enzyme Alide_4206 PF13193 AMP-binding enzyme C-terminal domain Alide_4206 PF16177 Alide_4206 Alide_4207 PF12802 MarR family Alide_4208 PF09722 Alide_4208 Alide_4209 PF08808 Alide_4209 Alide_4210 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Alide_4210 PF02558 Ketopantoate reductase PanE/ApbA Alide_4211 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4212 PF00512 His Kinase A (phospho-acceptor) domain Alide_4212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_4212 PF08521 Alide_4212 Alide_4213 PF00072 Response regulator receiver domain Alide_4213 PF00486 Transcriptional regulatory protein, C terminal Alide_4214 PF00266 Aminotransferase class-V Alide_4215 PF00528 Binding-protein-dependent transport system inner membrane component Alide_4216 PF00005 ABC transporter Alide_4217 PF13343 Bacterial extracellular solute-binding protein Alide_4218 PF00392 Bacterial regulatory proteins, gntR family Alide_4218 PF07729 FCD domain Alide_4219 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Alide_4220 PF00171 Aldehyde dehydrogenase family Alide_4222 PF01266 FAD dependent oxidoreductase Alide_4223 PF00842 Alanine racemase, C-terminal domain Alide_4223 PF01168 Alanine racemase, N-terminal domain Alide_4224 PF01266 FAD dependent oxidoreductase Alide_4225 PF01037 AsnC family Alide_4225 PF13412 Winged helix-turn-helix DNA-binding Alide_4226 PF13463 Winged helix DNA-binding domain Alide_4227 PF00154 recA bacterial DNA recombination protein Alide_4228 PF02631 RecX family Alide_4229 PF07793 Alide_4229 Alide_4230 PF02355 Protein export membrane protein Alide_4230 PF07549 SecD/SecF GG Motif Alide_4231 PF02355 Protein export membrane protein Alide_4231 PF07549 SecD/SecF GG Motif Alide_4231 PF13721 SecD export protein N-terminal TM region Alide_4232 PF02699 Preprotein translocase subunit Alide_4233 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Alide_4233 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide_4234 PF01037 AsnC family Alide_4234 PF13412 Winged helix-turn-helix DNA-binding Alide_4235 PF05977 Transmembrane secretion effector Alide_4236 PF03562 MltA specific insert domain Alide_4236 PF06725 3D domain Alide_4238 PF00691 OmpA family Alide_4238 PF13488 Alide_4238 Alide_4239 PF00072 Response regulator receiver domain Alide_4239 PF00196 Bacterial regulatory proteins, luxR family Alide_4240 PF00989 PAS fold Alide_4240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_4241 PF00795 Carbon-nitrogen hydrolase Alide_4242 PF13116 Alide_4242 Alide_4242 PF13502 Alide_4242 Alide_4243 PF03710 Glutamate-ammonia ligase adenylyltransferase Alide_4243 PF08335 GlnD PII-uridylyltransferase Alide_4244 PF16576 Alide_4244 Alide_4245 PF00873 AcrB/AcrD/AcrF family Alide_4246 PF13410 Glutathione S-transferase, C-terminal domain Alide_4246 PF13417 Glutathione S-transferase, N-terminal domain Alide_4247 PF00206 Lyase Alide_4247 PF08328 Adenylosuccinate lyase C-terminal Alide_4248 PF07152 YaeQ protein Alide_4249 PF09413 Domain of unknown function (DUF2007) Alide_4250 PF06945 Alide_4250 Alide_4250 PF12512 Alide_4250 Alide_4251 PF03741 Alide_4251 Alide_4253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4253 PF03466 LysR substrate binding domain Alide_4254 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4256 PF04020 Alide_4256 Alide_4257 PF01435 Peptidase family M48 Alide_4258 PF01967 MoaC family Alide_4260 PF00114 Pilin (bacterial filament) Alide_4260 PF07963 Prokaryotic N-terminal methylation motif Alide_4261 PF12706 Beta-lactamase superfamily domain Alide_4262 PF00498 FHA domain Alide_4263 PF13672 Protein phosphatase 2C Alide_4264 PF03741 Alide_4264 Alide_4265 PF00549 CoA-ligase Alide_4265 PF02629 CoA binding domain Alide_4266 PF00549 CoA-ligase Alide_4266 PF08442 ATP-grasp domain Alide_4267 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alide_4268 PF02481 DNA recombination-mediator protein A Alide_4269 PF01476 LysM domain Alide_4270 PF01327 Polypeptide deformylase Alide_4272 PF00551 Formyl transferase Alide_4272 PF02911 Formyl transferase, C-terminal domain Alide_4273 PF03591 Alide_4273 Alide_4274 PF05437 Alide_4274 Alide_4275 PF00162 Phosphoglycerate kinase Alide_4278 PF00892 EamA-like transporter family Alide_4279 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Alide_4280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4280 PF03466 LysR substrate binding domain Alide_4281 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4282 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Alide_4283 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide_4283 PF00672 HAMP domain Alide_4283 PF08376 Nitrate and nitrite sensing Alide_4284 PF00005 ABC transporter Alide_4285 PF07690 Major Facilitator Superfamily Alide_4286 PF00436 Single-strand binding protein family Alide_4287 PF01614 Bacterial transcriptional regulator Alide_4287 PF09339 IclR helix-turn-helix domain Alide_4288 PF02515 CoA-transferase family III Alide_4289 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4290 PF03061 Thioesterase superfamily Alide_4291 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4292 PF13561 Enoyl-(Acyl carrier protein) reductase Alide_4293 PF13452 N-terminal half of MaoC dehydratase Alide_4294 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_4294 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_4294 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_4295 PF02515 CoA-transferase family III Alide_4296 PF00378 Enoyl-CoA hydratase/isomerase family Alide_4297 PF02652 Alide_4297 Alide_4298 PF03054 tRNA methyl transferase Alide_4299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4299 PF03466 LysR substrate binding domain Alide_4300 PF04303 PrpF protein Alide_4301 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4302 PF13609 Gram-negative porin Alide_4303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4303 PF03466 LysR substrate binding domain Alide_4304 PF00890 FAD binding domain Alide_4306 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4307 PF00158 Sigma-54 interaction domain Alide_4307 PF02954 Bacterial regulatory protein, Fis family Alide_4308 PF01039 Carboxyl transferase domain Alide_4309 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4310 PF13380 CoA binding domain Alide_4310 PF13549 ATP-grasp domain Alide_4310 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide_4311 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Alide_4311 PF02785 Biotin carboxylase C-terminal domain Alide_4311 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide_4312 PF00364 Biotin-requiring enzyme Alide_4313 PF03061 Thioesterase superfamily Alide_4314 PF00293 NUDIX domain Alide_4316 PF00593 TonB dependent receptor Alide_4316 PF07715 TonB-dependent Receptor Plug Domain Alide_4317 PF03061 Thioesterase superfamily Alide_4318 PF01614 Bacterial transcriptional regulator Alide_4318 PF09339 IclR helix-turn-helix domain Alide_4319 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4320 PF02515 CoA-transferase family III Alide_4321 PF13452 N-terminal half of MaoC dehydratase Alide_4322 PF00501 AMP-binding enzyme Alide_4322 PF13193 AMP-binding enzyme C-terminal domain Alide_4323 PF00677 Lumazine binding domain Alide_4324 PF01810 Alide_4324 Alide_4325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide_4326 PF00072 Response regulator receiver domain Alide_4326 PF00486 Transcriptional regulatory protein, C terminal Alide_4327 PF03413 Peptidase propeptide and YPEB domain Alide_4328 PF13670 Alide_4328 Alide_4329 PF01794 Alide_4329 Alide_4329 PF08022 Alide_4329 Alide_4330 PF01292 Prokaryotic cytochrome b561 Alide_4331 PF13670 Alide_4331 Alide_4332 PF10029 Alide_4332 Alide_4333 PF00175 Oxidoreductase NAD-binding domain Alide_4333 PF00258 Flavodoxin Alide_4333 PF00970 Oxidoreductase FAD-binding domain Alide_4333 PF03929 Alide_4333 Alide_4334 PF02424 ApbE family Alide_4337 PF00122 E1-E2 ATPase Alide_4337 PF00689 Cation transporting ATPase, C-terminus Alide_4337 PF00690 Cation transporter/ATPase, N-terminus Alide_4337 PF00702 haloacid dehalogenase-like hydrolase Alide_4340 PF03060 Nitronate monooxygenase Alide_4341 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4342 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_4342 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_4342 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_4343 PF01614 Bacterial transcriptional regulator Alide_4343 PF09339 IclR helix-turn-helix domain Alide_4344 PF02515 CoA-transferase family III Alide_4345 PF00107 Zinc-binding dehydrogenase Alide_4345 PF08240 Alcohol dehydrogenase GroES-like domain Alide_4347 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide_4347 PF02770 Acyl-CoA dehydrogenase, middle domain Alide_4347 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide_4348 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4349 PF01614 Bacterial transcriptional regulator Alide_4349 PF09339 IclR helix-turn-helix domain Alide_4350 PF02515 CoA-transferase family III Alide_4351 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4351 PF03466 LysR substrate binding domain Alide_4352 PF03401 Tripartite tricarboxylate transporter family receptor Alide_4353 PF01019 Gamma-glutamyltranspeptidase Alide_4355 PF01593 Flavin containing amine oxidoreductase Alide_4356 PF01564 Spermine/spermidine synthase Alide_4357 PF03994 Alide_4357 Alide_4358 PF13785 Alide_4358 Alide_4359 PF09851 Alide_4359 Alide_4359 PF13421 Alide_4359 Alide_4360 PF09834 Alide_4360 Alide_4361 PF00460 Flagella basal body rod protein Alide_4361 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide_4362 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4362 PF03466 LysR substrate binding domain Alide_4363 PF00202 Aminotransferase class-III Alide_4364 PF00171 Aldehyde dehydrogenase family Alide_4365 PF00990 GGDEF domain Alide_4365 PF05230 Alide_4365 Alide_4366 PF00392 Bacterial regulatory proteins, gntR family Alide_4366 PF07729 FCD domain Alide_4367 PF13458 Periplasmic binding protein Alide_4368 PF02653 Alide_4368 Alide_4369 PF02653 Alide_4369 Alide_4370 PF00005 ABC transporter Alide_4370 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide_4371 PF00005 ABC transporter Alide_4372 PF01546 Peptidase family M20/M25/M40 Alide_4372 PF07687 Peptidase dimerisation domain Alide_4373 PF07171 MlrC C-terminus Alide_4373 PF07364 Protein of unknown function (DUF1485) Alide_4374 PF00390 Malic enzyme, N-terminal domain Alide_4374 PF01515 Phosphate acetyl/butaryl transferase Alide_4374 PF03949 Malic enzyme, NAD binding domain Alide_4374 PF12434 Alide_4374 Alide_4375 PF00545 ribonuclease Alide_4376 PF01337 Barstar (barnase inhibitor) Alide_4377 PF00398 Ribosomal RNA adenine dimethylase Alide_4378 PF00639 PPIC-type PPIASE domain Alide_4378 PF09312 SurA N-terminal domain Alide_4379 PF04453 Organic solvent tolerance protein Alide_4380 PF01636 Phosphotransferase enzyme family Alide_4381 PF04452 RNA methyltransferase Alide_4384 PF13555 P-loop containing region of AAA domain Alide_4385 PF01546 Peptidase family M20/M25/M40 Alide_4385 PF07687 Peptidase dimerisation domain Alide_4386 PF00990 GGDEF domain Alide_4388 PF10546 Alide_4388 Alide_4390 PF07021 Methionine biosynthesis protein MetW Alide_4391 PF00561 alpha/beta hydrolase fold Alide_4392 PF01169 Alide_4392 Alide_4393 PF00076 RNA recognition motif Alide_4394 PF00076 RNA recognition motif Alide_4395 PF00106 short chain dehydrogenase Alide_4396 PF06835 Lipopolysaccharide-assembly, LptC-related Alide_4397 PF08282 haloacid dehalogenase-like hydrolase Alide_4398 PF00571 CBS domain Alide_4398 PF01380 SIS domain Alide_4399 PF00999 Sodium/hydrogen exchanger family Alide_4399 PF02080 TrkA-C domain Alide_4399 PF02254 TrkA-N domain Alide_4400 PF00156 Phosphoribosyl transferase domain Alide_4402 PF00027 Cyclic nucleotide-binding domain Alide_4403 PF01926 50S ribosome-binding GTPase Alide_4403 PF10396 GTP-binding protein TrmE N-terminus Alide_4403 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE Alide_4404 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide_4405 PF01266 FAD dependent oxidoreductase Alide_4406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide_4406 PF03466 LysR substrate binding domain Alide_4407 PF01177 Asp/Glu/Hydantoin racemase Alide_4408 PF04951 D-aminopeptidase Alide_4409 PF03576 Peptidase family S58 Alide_4410 PF00528 Binding-protein-dependent transport system inner membrane component Alide_4410 PF12911 Alide_4410 Alide_4411 PF00528 Binding-protein-dependent transport system inner membrane component Alide_4412 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_4413 PF00005 ABC transporter Alide_4413 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide_4414 PF01112 Asparaginase Alide_4415 PF01380 SIS domain Alide_4415 PF01418 Helix-turn-helix domain, rpiR family Alide_4418 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide_4419 PF02096 60Kd inner membrane protein Alide_4419 PF14849 YidC periplasmic domain Alide_4420 PF01809 Alide_4420 Alide_4421 PF00825 Ribonuclease P Alide_4422 PF00468 Ribosomal protein L34 Alide_4424 PF08401 Alide_4424 Alide_4424 PF13362 Toprim domain Alide_4426 PF01131 DNA topoisomerase Alide_4426 PF01396 Alide_4426 Alide_4426 PF01751 Toprim domain Alide_4427 PF10502 Signal peptidase, peptidase S26 Alide_4428 PF02534 Type IV secretory system Conjugative DNA transfer Alide_4429 PF03432 Alide_4429 Alide_4431 PF17273 Alide_4431 Alide_4432 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_4433 PF11657 Alide_4433 Alide_4436 PF11740 Alide_4436 Alide_4437 PF02195 ParB-like nuclease domain Alide_4437 PF06613 KorB C-terminal beta-barrel domain Alide_4437 PF08535 KorB domain Alide_4438 PF13614 AAA domain Alide_4439 PF16509 Alide_4439 Alide_4440 PF10959 Alide_4440 Alide_4441 PF17394 Alide_4441 Alide_4442 PF10892 Alide_4442 Alide_4443 PF17383 Alide_4443 Alide_4446 PF03230 Antirestriction protein Alide_4447 PF01527 Transposase Alide_4450 PF03061 Thioesterase superfamily Alide_4451 PF00665 Integrase core domain Alide_4452 PF01695 IstB-like ATP binding protein Alide_4454 PF05016 Plasmid stabilisation system protein Alide_4456 PF00239 Resolvase, N terminal domain Alide_4457 PF01526 Alide_4457 Alide_4457 PF13700 Alide_4457 Alide_4460 PF01527 Transposase Alide_4461 PF04326 Divergent AAA domain Alide_4462 PF00043 Glutathione S-transferase, C-terminal domain Alide_4462 PF02798 Glutathione S-transferase, N-terminal domain Alide_4463 PF00440 Bacterial regulatory proteins, tetR family Alide_4463 PF16925 Alide_4463 Alide_4464 PF00106 short chain dehydrogenase Alide_4465 PF02798 Glutathione S-transferase, N-terminal domain Alide_4465 PF13410 Glutathione S-transferase, C-terminal domain Alide_4466 PF00892 EamA-like transporter family Alide_4467 PF00578 AhpC/TSA family Alide_4468 PF15738 Alide_4468 Alide_4469 PF04221 RelB antitoxin Alide_4470 PF07042 Alide_4470 Alide_4471 PF00436 Single-strand binding protein family Alide_4472 PF01381 Helix-turn-helix Alide_4473 PF00437 Type II/IV secretion system protein Alide_4474 PF04956 Alide_4474 Alide_4475 PF05101 Alide_4475 Alide_4476 PF03135 Alide_4476 Alide_4477 PF04335 VirB8 protein Alide_4478 PF03524 Conjugal transfer protein Alide_4479 PF07283 Alide_4479 Alide_4480 PF03743 Bacterial conjugation TrbI-like protein Alide_4483 PF04610 Alide_4483 Alide_4484 PF07424 Alide_4484 Alide_4485 PF01464 Transglycosylase SLT domain Alide_4487 PF05857 Alide_4487 Alide_4488 PF00691 OmpA family Alide_4489 PF00239 Resolvase, N terminal domain Alide_4490 PF15738 Alide_4490 Alide_4491 PF01526 Alide_4491 Alide_4491 PF13700 Alide_4491 Alide_4493 PF00665 Integrase core domain Alide_4493 PF09299 Mu transposase, C-terminal Alide_4493 PF13518 Helix-turn-helix domain Alide_4494 PF05621 Alide_4494 Alide_4495 PF06527 Alide_4495 Alide_4496 PF00239 Resolvase, N terminal domain Alide_4497 PF05052 Alide_4497 Alide_4498 PF13411 MerR HTH family regulatory protein Alide_4499 PF00403 Heavy-metal-associated domain Alide_4499 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide_4499 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide_4500 PF11431 Membrane transport protein MerF Alide_4501 PF00403 Heavy-metal-associated domain Alide_4502 PF02411 Alide_4502 Alide_4503 PF00376 MerR family regulatory protein Alide_4503 PF09278 MerR, DNA binding Alide_4504 PF16694 Alide_4504 Alide_4505 PF02627 Carboxymuconolactone decarboxylase family Alide_4506 PF12833 Helix-turn-helix domain Alide_4506 PF12852 Cupin Alide_4507 PF01909 Nucleotidyltransferase domain Alide_4508 PF01934 Protein of unknown function DUF86 Alide_4510 PF07883 Cupin domain Alide_4514 PF00239 Resolvase, N terminal domain Alide_4514 PF02796 Helix-turn-helix domain of resolvase Alide_4516 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_4520 PF00816 H-NS histone family Alide_4521 PF00816 H-NS histone family Alide_4523 PF10412 Type IV secretion-system coupling protein DNA-binding domain Alide_4523 PF12696 TraM recognition site of TraD and TraG Alide_4524 PF14348 Alide_4524 Alide_4527 PF01464 Transglycosylase SLT domain Alide_4530 PF07178 Alide_4530 Alide_4531 PF05309 Alide_4531 Alide_4532 PF06586 Alide_4532 Alide_4533 PF03743 Bacterial conjugation TrbI-like protein Alide_4534 PF09676 Alide_4534 Alide_4536 PF11130 Alide_4536 Alide_4536 PF12846 AAA-like domain Alide_4538 PF10502 Signal peptidase, peptidase S26 Alide_4539 PF09673 Alide_4539 Alide_4540 PF06834 Alide_4540 Alide_4541 PF06986 Alide_4541 Alide_4543 PF13728 F plasmid transfer operon protein Alide_4544 PF06122 Alide_4544 Alide_4545 PF07916 Alide_4545 Alide_4546 PF08238 Sel1 repeat Alide_4548 PF01695 IstB-like ATP binding protein Alide_4549 PF00665 Integrase core domain Alide_4551 PF00665 Integrase core domain Alide_4552 PF01695 IstB-like ATP binding protein Alide_4569 PF08843 Nucleotidyl transferase of unknown function (DUF1814) Alide_4572 PF00589 Phage integrase family Alide_4590 PF11811 Alide_4590 Alide_4592 PF03050 Alide_4592 Alide_4592 PF13005 Alide_4592 Alide_4592 PF13007 Alide_4592 Alide_4592 PF13817 Alide_4592 Alide_4593 PF05717 Alide_4593 Alide_4594 PF01527 Transposase Alide_4595 PF13091 PLD-like domain Alide_4597 PF01343 Peptidase family S49 Alide_4601 PF01526 Alide_4601 Alide_4602 PF01526 Alide_4602 Alide_4602 PF13700 Alide_4602 Alide_4605 PF05016 Plasmid stabilisation system protein Alide_4606 PF06778 Chlorite dismutase Alide_4607 PF07883 Cupin domain Alide_4608 PF04982 Alide_4608 Alide_4609 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Alide_4610 PF00034 Cytochrome c Alide_4611 PF09459 Ethylbenzene dehydrogenase Alide_4612 PF02613 Nitrate reductase delta subunit Alide_4613 PF13247 4Fe-4S dicluster domain Alide_4614 PF00384 Molybdopterin oxidoreductase Alide_4614 PF01568 Molydopterin dinucleotide binding domain Alide_4615 PF06778 Chlorite dismutase Alide_4618 PF07883 Cupin domain Alide_4619 PF00589 Phage integrase family Alide_4620 PF01695 IstB-like ATP binding protein Alide_4620 PF08483 Alide_4620 Alide_4621 PF00665 Integrase core domain Alide_4622 PF13700 Alide_4622 Alide_4623 PF00589 Phage integrase family Alide_4623 PF12482 Alide_4623 Alide_4625 PF04851 Type III restriction enzyme, res subunit Alide_4626 PF01555 DNA methylase Alide_4627 PF02452 PemK-like protein Alide_4628 PF11455 Alide_4628 Alide_4629 PF01396 Alide_4629 Alide_4629 PF04471 Restriction endonuclease Alide_4630 PF00216 Bacterial DNA-binding protein Alide_4632 PF11672 Alide_4632 Alide_4633 PF13700 Alide_4633 Alide_4634 PF07883 Cupin domain Alide_4635 PF06778 Chlorite dismutase Alide_4636 PF05016 Plasmid stabilisation system protein Alide_4638 PF00239 Resolvase, N terminal domain Alide_4641 PF13700 Alide_4641 Alide_4645 PF01051 Initiator Replication protein