Alide_0001 SM00382 ATPases associated with a variety of cellular activities Alide_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Alide_0002 SM00480 DNA polymerase III beta subunit Alide_0003 SM00387 Histidine kinase-like ATPases Alide_0003 SM00433 TopoisomeraseII Alide_0010 SM00878 Biotin carboxylase C-terminal domain Alide_0010 SM01209 Alide_0010 Alide_0016 SM00487 DEAD-like helicases superfamily Alide_0016 SM00491 Alide_0016 Alide_0017 SM00479 Alide_0017 Alide_0020 SM00052 Putative diguanylate phosphodiesterase Alide_0020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Alide_0020 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_0020 SM00091 PAS domain Alide_0020 SM00267 diguanylate cyclase Alide_0021 SM00346 helix_turn_helix isocitrate lyase regulation Alide_0026 SM00881 CoA binding domain Alide_0028 SM00346 helix_turn_helix isocitrate lyase regulation Alide_0035 SM00422 helix_turn_helix, mercury resistance Alide_0038 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_0038 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_0042 SM00448 cheY-homologous receiver domain Alide_0042 SM00862 Transcriptional regulatory protein, C terminal Alide_0043 SM00387 Histidine kinase-like ATPases Alide_0043 SM00388 His Kinase A (phosphoacceptor) domain Alide_0048 SM01228 Alide_0048 Alide_0054 SM00470 ParB-like nuclease domain Alide_0057 SM00342 helix_turn_helix, arabinose operon control protein Alide_0104 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Alide_0105 SM00903 Flavin reductase like domain Alide_0116 SM00831 Cation transporter/ATPase, N-terminus Alide_0122 SM00341 Helicase and RNase D C-terminal Alide_0122 SM00487 DEAD-like helicases superfamily Alide_0122 SM00490 helicase superfamily c-terminal domain Alide_0122 SM00956 Alide_0122 Alide_0126 SM00052 Putative diguanylate phosphodiesterase Alide_0126 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_0126 SM00091 PAS domain Alide_0126 SM00267 diguanylate cyclase Alide_0129 SM00382 ATPases associated with a variety of cellular activities Alide_0141 SM00822 Alide_0141 Alide_0145 SM00346 helix_turn_helix isocitrate lyase regulation Alide_0153 SM00822 Alide_0153 Alide_0155 SM00346 helix_turn_helix isocitrate lyase regulation Alide_0164 SM00822 Alide_0164 Alide_0171 SM00829 Enoylreductase Alide_0185 SM00346 helix_turn_helix isocitrate lyase regulation Alide_0192 SM00878 Biotin carboxylase C-terminal domain Alide_0201 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide_0204 SM01018 B12 binding domain Alide_0214 SM00382 ATPases associated with a variety of cellular activities Alide_0227 SM00448 cheY-homologous receiver domain Alide_0227 SM00862 Transcriptional regulatory protein, C terminal Alide_0228 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_0228 SM00387 Histidine kinase-like ATPases Alide_0228 SM00388 His Kinase A (phosphoacceptor) domain Alide_0232 SM00422 helix_turn_helix, mercury resistance Alide_0243 SM00530 Helix-turn-helix XRE-family like proteins Alide_0246 SM00954 Region found in RelA / SpoT proteins Alide_0248 SM00470 ParB-like nuclease domain Alide_0251 SM00530 Helix-turn-helix XRE-family like proteins Alide_0262 SM00382 ATPases associated with a variety of cellular activities Alide_0263 SM00645 Papain family cysteine protease Alide_0266 SM00382 ATPases associated with a variety of cellular activities Alide_0268 SM00938 Nitrogen regulatory protein P-II Alide_0274 SM00849 Metallo-beta-lactamase superfamily Alide_0283 SM00881 CoA binding domain Alide_0287 SM00945 ProQ/FINO family Alide_0290 SM01005 Alanine racemase, C-terminal domain Alide_0293 SM00382 ATPases associated with a variety of cellular activities Alide_0313 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_0313 SM00387 Histidine kinase-like ATPases Alide_0313 SM00388 His Kinase A (phosphoacceptor) domain Alide_0314 SM00448 cheY-homologous receiver domain Alide_0314 SM00862 Transcriptional regulatory protein, C terminal Alide_0316 SM00342 helix_turn_helix, arabinose operon control protein Alide_0321 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_0321 SM00895 Alide_0321 Alide_0322 SM00382 ATPases associated with a variety of cellular activities Alide_0322 SM00989 Alide_0322 Alide_0338 SM00859 Semialdehyde dehydrogenase, NAD binding domain Alide_0343 SM00849 Metallo-beta-lactamase superfamily Alide_0344 SM00346 helix_turn_helix isocitrate lyase regulation Alide_0357 SM00346 helix_turn_helix isocitrate lyase regulation Alide_0363 SM00382 ATPases associated with a variety of cellular activities Alide_0364 SM00382 ATPases associated with a variety of cellular activities Alide_0366 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_0366 SM00895 Alide_0366 Alide_0373 SM00845 GatB domain Alide_0384 SM00382 ATPases associated with a variety of cellular activities Alide_0397 SM00347 helix_turn_helix multiple antibiotic resistance protein Alide_0399 SM01004 Delta-aminolevulinic acid dehydratase Alide_0405 SM00936 Penicillin-binding protein 5, C-terminal domain Alide_0408 SM00838 Elongation factor G C-terminus Alide_0408 SM00889 Elongation factor G, domain IV Alide_0410 SM01403 Alide_0410 Alide_0414 SM01382 Alide_0414 Alide_0414 SM01383 Alide_0414 Alide_0417 SM00322 K homology RNA-binding domain Alide_0429 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide_0439 SM00382 ATPases associated with a variety of cellular activities Alide_0457 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Alide_0457 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Alide_0458 SM00649 Ribosomal protein L11/L12 Alide_0463 SM00663 RNA polymerase I subunit A N-terminus Alide_0467 SM00091 PAS domain Alide_0467 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_0467 SM00387 Histidine kinase-like ATPases Alide_0467 SM00388 His Kinase A (phosphoacceptor) domain Alide_0468 SM00448 cheY-homologous receiver domain Alide_0471 SM00530 Helix-turn-helix XRE-family like proteins Alide_0474 SM00382 ATPases associated with a variety of cellular activities Alide_0481 SM00984 UDP binding domain Alide_0489 SM00749 bacterial OsmY and nodulation domain Alide_0492 SM00100 Cyclic nucleotide-monophosphate binding domain Alide_0501 SM00052 Putative diguanylate phosphodiesterase Alide_0501 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_0501 SM00091 PAS domain Alide_0501 SM00267 diguanylate cyclase Alide_0504 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_0504 SM00387 Histidine kinase-like ATPases Alide_0505 SM00421 helix_turn_helix, Lux Regulon Alide_0505 SM00448 cheY-homologous receiver domain Alide_0508 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide_0513 SM00947 Carbonic anhydrase Alide_0520 SM00028 Tetratricopeptide repeats Alide_0521 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide_0541 SM00382 ATPases associated with a variety of cellular activities Alide_0545 SM00382 ATPases associated with a variety of cellular activities Alide_0547 SM00382 ATPases associated with a variety of cellular activities Alide_0549 SM00100 Cyclic nucleotide-monophosphate binding domain Alide_0549 SM00419 helix_turn_helix, cAMP Regulatory protein Alide_0550 SM00363 S4 RNA-binding domain Alide_0551 SM00387 Histidine kinase-like ATPases Alide_0555 SM00220 Serine/Threonine protein kinases, catalytic domain Alide_0565 SM00382 ATPases associated with a variety of cellular activities Alide_0568 SM00052 Putative diguanylate phosphodiesterase Alide_0568 SM00091 PAS domain Alide_0568 SM00267 diguanylate cyclase Alide_0575 SM00829 Enoylreductase Alide_0579 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Alide_0584 SM00382 ATPases associated with a variety of cellular activities Alide_0588 SM01119 Alide_0588 Alide_0589 SM00855 Phosphoglycerate mutase family Alide_0592 SM00905 Dihydroneopterin aldolase Alide_0593 SM00905 Dihydroneopterin aldolase Alide_0604 SM00382 ATPases associated with a variety of cellular activities Alide_0614 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Alide_0617 SM00849 Metallo-beta-lactamase superfamily Alide_0620 SM00825 Beta-ketoacyl synthase Alide_0623 SM01091 Transporter associated domain Alide_0625 SM00344 helix_turn_helix ASNC type Alide_0629 SM00861 Transketolase, pyrimidine binding domain Alide_0635 SM00563 Phosphate acyltransferases Alide_0637 SM00450 Rhodanese Homology Domain Alide_0638 SM00257 Lysin motif Alide_0667 SM00382 ATPases associated with a variety of cellular activities Alide_0683 SM00382 ATPases associated with a variety of cellular activities Alide_0694 SM00062 Bacterial periplasmic substrate-binding proteins Alide_0697 SM00382 ATPases associated with a variety of cellular activities Alide_0702 SM00996 S-adenosyl-L-homocysteine hydrolase Alide_0702 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Alide_0714 SM00363 S4 RNA-binding domain Alide_0717 SM00387 Histidine kinase-like ATPases Alide_0719 SM00271 DnaJ molecular chaperone homology domain Alide_0720 SM00344 helix_turn_helix ASNC type Alide_0731 SM00448 cheY-homologous receiver domain Alide_0731 SM00862 Transcriptional regulatory protein, C terminal Alide_0732 SM00387 Histidine kinase-like ATPases Alide_0732 SM00388 His Kinase A (phosphoacceptor) domain Alide_0734 SM00327 von Willebrand factor (vWF) type A domain Alide_0740 SM00382 ATPases associated with a variety of cellular activities Alide_0749 SM00984 UDP binding domain Alide_0758 SM00984 UDP binding domain Alide_0769 SM00387 Histidine kinase-like ATPases Alide_0769 SM00388 His Kinase A (phosphoacceptor) domain Alide_0770 SM00382 ATPases associated with a variety of cellular activities Alide_0770 SM00448 cheY-homologous receiver domain Alide_0771 SM00028 Tetratricopeptide repeats Alide_0781 SM01209 Alide_0781 Alide_0783 SM00382 ATPases associated with a variety of cellular activities Alide_0786 SM00838 Elongation factor G C-terminus Alide_0786 SM00889 Elongation factor G, domain IV Alide_0791 SM00382 ATPases associated with a variety of cellular activities Alide_0802 SM00855 Phosphoglycerate mutase family Alide_0812 SM00382 ATPases associated with a variety of cellular activities Alide_0813 SM00382 ATPases associated with a variety of cellular activities Alide_0819 SM00883 Chaperonin 10 Kd subunit Alide_0827 SM01329 Alide_0827 Alide_0835 SM00849 Metallo-beta-lactamase superfamily Alide_0838 SM01219 Alide_0838 Alide_0844 SM00965 Secretin and TonB N terminus short domain Alide_0847 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide_0853 SM01321 Alide_0853 Alide_0856 SM00062 Bacterial periplasmic substrate-binding proteins Alide_0856 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Alide_0858 SM00382 ATPases associated with a variety of cellular activities Alide_0862 SM00382 ATPases associated with a variety of cellular activities Alide_0868 SM00091 PAS domain Alide_0868 SM00267 diguanylate cyclase Alide_0869 SM00382 ATPases associated with a variety of cellular activities Alide_0899 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide_0909 SM00957 SecA DEAD-like domain Alide_0909 SM00958 SecA preprotein cross-linking domain Alide_0918 SM00382 ATPases associated with a variety of cellular activities Alide_0929 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Alide_0933 SM01091 Transporter associated domain Alide_0934 SM00382 ATPases associated with a variety of cellular activities Alide_0937 SM00937 Alide_0937 Alide_0945 SM00382 ATPases associated with a variety of cellular activities Alide_0954 SM00978 Alide_0954 Alide_0958 SM00834 Putative regulatory protein Alide_0965 SM01034 Sensors of blue-light using FAD Alide_0967 SM00387 Histidine kinase-like ATPases Alide_0967 SM00388 His Kinase A (phosphoacceptor) domain Alide_0968 SM00421 helix_turn_helix, Lux Regulon Alide_0968 SM00448 cheY-homologous receiver domain Alide_0975 SM00382 ATPases associated with a variety of cellular activities Alide_0976 SM00382 ATPases associated with a variety of cellular activities Alide_0982 SM01400 Alide_0982 Alide_0985 SM00028 Tetratricopeptide repeats Alide_0986 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Alide_0986 SM01232 Alide_0986 Alide_0988 SM00478 endonuclease III Alide_0988 SM00525 Alide_0988 Alide_0999 SM00382 ATPases associated with a variety of cellular activities Alide_1000 SM00062 Bacterial periplasmic substrate-binding proteins Alide_1001 SM00062 Bacterial periplasmic substrate-binding proteins Alide_1004 SM00796 Allophanate hydrolase subunit 1 Alide_1005 SM00797 Allophanate hydrolase subunit 2 Alide_1008 SM00878 Biotin carboxylase C-terminal domain Alide_1011 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide_1014 SM00331 Sigma factor PP2C-like phosphatases Alide_1014 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Alide_1015 SM00220 Serine/Threonine protein kinases, catalytic domain Alide_1030 SM00382 ATPases associated with a variety of cellular activities Alide_1036 SM00072 Guanylate kinase homologues. Alide_1037 SM01409 Alide_1037 Alide_1038 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide_1038 SM00954 Region found in RelA / SpoT proteins Alide_1041 SM01387 Alide_1041 Alide_1042 SM00316 Ribosomal protein S1-like RNA-binding domain Alide_1042 SM00322 K homology RNA-binding domain Alide_1043 SM00829 Enoylreductase Alide_1051 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide_1052 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Alide_1063 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide_1064 SM00853 MutL C terminal dimerisation domain Alide_1064 SM01340 Alide_1064 Alide_1070 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide_1071 SM01092 CO dehydrogenase flavoprotein C-terminal domain Alide_1073 SM00646 Alide_1073 Alide_1081 SM00052 Putative diguanylate phosphodiesterase Alide_1082 SM00052 Putative diguanylate phosphodiesterase Alide_1086 SM00062 Bacterial periplasmic substrate-binding proteins Alide_1086 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Alide_1089 SM00382 ATPases associated with a variety of cellular activities Alide_1091 SM01192 Alide_1091 Alide_1091 SM01193 Alide_1091 Alide_1099 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Alide_1102 SM01130 Alide_1102 Alide_1106 SM00387 Histidine kinase-like ATPases Alide_1106 SM00433 TopoisomeraseII Alide_1107 SM00434 DNA Topoisomerase IV Alide_1109 SM00849 Metallo-beta-lactamase superfamily Alide_1111 SM00450 Rhodanese Homology Domain Alide_1116 SM00861 Transketolase, pyrimidine binding domain Alide_1118 SM00487 DEAD-like helicases superfamily Alide_1118 SM00490 helicase superfamily c-terminal domain Alide_1125 SM00829 Enoylreductase Alide_1126 SM00852 Probable molybdopterin binding domain Alide_1140 SM00487 DEAD-like helicases superfamily Alide_1140 SM00490 helicase superfamily c-terminal domain Alide_1143 SM00100 Cyclic nucleotide-monophosphate binding domain Alide_1143 SM00419 helix_turn_helix, cAMP Regulatory protein Alide_1146 SM00382 ATPases associated with a variety of cellular activities Alide_1148 SM00327 von Willebrand factor (vWF) type A domain Alide_1153 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Alide_1156 SM00986 Uracil DNA glycosylase superfamily Alide_1156 SM00987 UreE urease accessory protein, C-terminal domain Alide_1158 SM00382 ATPases associated with a variety of cellular activities Alide_1163 SM00052 Putative diguanylate phosphodiesterase Alide_1163 SM00267 diguanylate cyclase Alide_1165 SM00829 Enoylreductase Alide_1171 SM00382 ATPases associated with a variety of cellular activities Alide_1175 SM00354 helix_turn _helix lactose operon repressor Alide_1178 SM00904 Riboflavin kinase Alide_1179 SM00507 HNH nucleases Alide_1188 SM00843 Alide_1188 Alide_1191 SM00986 Uracil DNA glycosylase superfamily Alide_1191 SM00987 UreE urease accessory protein, C-terminal domain Alide_1192 SM00382 ATPases associated with a variety of cellular activities Alide_1195 SM00382 ATPases associated with a variety of cellular activities Alide_1196 SM00382 ATPases associated with a variety of cellular activities Alide_1214 SM00479 Alide_1214 Alide_1216 SM00487 DEAD-like helicases superfamily Alide_1216 SM00490 helicase superfamily c-terminal domain Alide_1217 SM00267 diguanylate cyclase Alide_1221 SM00100 Cyclic nucleotide-monophosphate binding domain Alide_1221 SM00419 helix_turn_helix, cAMP Regulatory protein Alide_1225 SM00382 ATPases associated with a variety of cellular activities Alide_1286 SM01240 Alide_1286 Alide_1289 SM00062 Bacterial periplasmic substrate-binding proteins Alide_1289 SM00267 diguanylate cyclase Alide_1294 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Alide_1294 SM00474 3'-5' exonuclease Alide_1294 SM00475 5'-3' exonuclease Alide_1294 SM00482 DNA polymerase A domain Alide_1305 SM00448 cheY-homologous receiver domain Alide_1305 SM00850 LytTr DNA-binding domain Alide_1309 SM00487 DEAD-like helicases superfamily Alide_1309 SM00490 helicase superfamily c-terminal domain Alide_1309 SM00982 Alide_1309 Alide_1309 SM01058 CarD-like/TRCF domain Alide_1312 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_1312 SM00387 Histidine kinase-like ATPases Alide_1312 SM00388 His Kinase A (phosphoacceptor) domain Alide_1313 SM00448 cheY-homologous receiver domain Alide_1313 SM00862 Transcriptional regulatory protein, C terminal Alide_1317 SM00954 Region found in RelA / SpoT proteins Alide_1319 SM00360 RNA recognition motif Alide_1321 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide_1332 SM00400 zinc finger Alide_1332 SM00493 Alide_1332 Alide_1334 SM00155 Phospholipase D. Active site motifs. Alide_1337 SM00382 ATPases associated with a variety of cellular activities Alide_1340 SM00382 ATPases associated with a variety of cellular activities Alide_1344 SM00382 ATPases associated with a variety of cellular activities Alide_1345 SM00382 ATPases associated with a variety of cellular activities Alide_1354 SM00382 ATPases associated with a variety of cellular activities Alide_1360 SM00419 helix_turn_helix, cAMP Regulatory protein Alide_1361 SM00091 PAS domain Alide_1361 SM00267 diguanylate cyclase Alide_1362 SM00382 ATPases associated with a variety of cellular activities Alide_1368 SM00382 ATPases associated with a variety of cellular activities Alide_1370 SM00062 Bacterial periplasmic substrate-binding proteins Alide_1371 SM00346 helix_turn_helix isocitrate lyase regulation Alide_1376 SM00382 ATPases associated with a variety of cellular activities Alide_1377 SM00382 ATPases associated with a variety of cellular activities Alide_1383 SM00899 Alide_1383 Alide_1433 SM00507 HNH nucleases Alide_1446 SM00631 Alide_1446 Alide_1447 SM00487 DEAD-like helicases superfamily Alide_1447 SM00490 helicase superfamily c-terminal domain Alide_1448 SM00382 ATPases associated with a variety of cellular activities Alide_1456 SM00422 helix_turn_helix, mercury resistance Alide_1471 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide_1473 SM00935 Outer membrane protein (OmpH-like) Alide_1491 SM00382 ATPases associated with a variety of cellular activities Alide_1494 SM01207 Alide_1494 Alide_1505 SM00382 ATPases associated with a variety of cellular activities Alide_1526 SM01126 Alide_1526 Alide_1561 SM00382 ATPases associated with a variety of cellular activities Alide_1562 SM00382 ATPases associated with a variety of cellular activities Alide_1565 SM00062 Bacterial periplasmic substrate-binding proteins Alide_1574 SM00990 Alide_1574 Alide_1582 SM00450 Rhodanese Homology Domain Alide_1583 SM00650 Ribosomal RNA adenine dimethylases Alide_1596 SM00316 Ribosomal protein S1-like RNA-binding domain Alide_1596 SM00732 Likely ribonuclease with RNase H fold. Alide_1604 SM00354 helix_turn _helix lactose operon repressor Alide_1610 SM00346 helix_turn_helix isocitrate lyase regulation Alide_1616 SM00421 helix_turn_helix, Lux Regulon Alide_1616 SM00448 cheY-homologous receiver domain Alide_1617 SM00387 Histidine kinase-like ATPases Alide_1617 SM00388 His Kinase A (phosphoacceptor) domain Alide_1626 SM00248 ankyrin repeats Alide_1629 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_1629 SM00895 Alide_1629 Alide_1633 SM00796 Allophanate hydrolase subunit 1 Alide_1633 SM00797 Allophanate hydrolase subunit 2 Alide_1634 SM00878 Biotin carboxylase C-terminal domain Alide_1635 SM00382 ATPases associated with a variety of cellular activities Alide_1659 SM00318 Staphylococcal nuclease homologues Alide_1663 SM00530 Helix-turn-helix XRE-family like proteins Alide_1718 SM00382 ATPases associated with a variety of cellular activities Alide_1728 SM00849 Metallo-beta-lactamase superfamily Alide_1735 SM00062 Bacterial periplasmic substrate-binding proteins Alide_1740 SM00852 Probable molybdopterin binding domain Alide_1743 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide_1749 SM00260 Two component signalling adaptor domain Alide_1750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_1750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_1754 SM00938 Nitrogen regulatory protein P-II Alide_1770 SM00917 LeuA allosteric (dimerisation) domain Alide_1771 SM00917 LeuA allosteric (dimerisation) domain Alide_1773 SM00346 helix_turn_helix isocitrate lyase regulation Alide_1778 SM00100 Cyclic nucleotide-monophosphate binding domain Alide_1778 SM00419 helix_turn_helix, cAMP Regulatory protein Alide_1787 SM00287 Bacterial SH3 domain homologues Alide_1810 SM00382 ATPases associated with a variety of cellular activities Alide_1811 SM00382 ATPases associated with a variety of cellular activities Alide_1814 SM00822 Alide_1814 Alide_1819 SM00671 Sel1-like repeats. Alide_1829 SM00422 helix_turn_helix, mercury resistance Alide_1845 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide_1847 SM00267 diguanylate cyclase Alide_1849 SM00411 bacterial (prokaryotic) histone like domain Alide_1850 SM00316 Ribosomal protein S1-like RNA-binding domain Alide_1853 SM00830 Chorismate mutase type II Alide_1855 SM00434 DNA Topoisomerase IV Alide_1864 SM00857 Resolvase, N terminal domain Alide_1867 SM00530 Helix-turn-helix XRE-family like proteins Alide_1890 SM00829 Enoylreductase Alide_1906 SM00530 Helix-turn-helix XRE-family like proteins Alide_1910 SM00363 S4 RNA-binding domain Alide_1911 SM00387 Histidine kinase-like ATPases Alide_1911 SM00388 His Kinase A (phosphoacceptor) domain Alide_1912 SM00448 cheY-homologous receiver domain Alide_1912 SM00862 Transcriptional regulatory protein, C terminal Alide_1920 SM00450 Rhodanese Homology Domain Alide_1923 SM00831 Cation transporter/ATPase, N-terminus Alide_1926 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide_1933 SM00316 Ribosomal protein S1-like RNA-binding domain Alide_1933 SM00357 Cold shock protein domain Alide_1933 SM00955 Alide_1933 Alide_1939 SM00316 Ribosomal protein S1-like RNA-binding domain Alide_1939 SM00322 K homology RNA-binding domain Alide_1953 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide_1953 SM01240 Alide_1953 Alide_1962 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_1962 SM00866 Alide_1962 Alide_1973 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide_1974 SM01092 CO dehydrogenase flavoprotein C-terminal domain Alide_1975 SM00382 ATPases associated with a variety of cellular activities Alide_1989 SM00448 cheY-homologous receiver domain Alide_1990 SM00387 Histidine kinase-like ATPases Alide_1990 SM00388 His Kinase A (phosphoacceptor) domain Alide_2007 SM00822 Alide_2007 Alide_2023 SM00318 Staphylococcal nuclease homologues Alide_2038 SM00344 helix_turn_helix ASNC type Alide_2044 SM00411 bacterial (prokaryotic) histone like domain Alide_2106 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_2106 SM00895 Alide_2106 Alide_2111 SM01007 Class II Aldolase and Adducin N-terminal domain Alide_2118 SM00028 Tetratricopeptide repeats Alide_2119 SM00840 Alide_2119 Alide_2120 SM00478 endonuclease III Alide_2130 SM00382 ATPases associated with a variety of cellular activities Alide_2132 SM00479 Alide_2132 Alide_2134 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Alide_2146 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_2150 SM01209 Alide_2150 Alide_2150 SM01210 Alide_2150 Alide_2155 SM00100 Cyclic nucleotide-monophosphate binding domain Alide_2155 SM00419 helix_turn_helix, cAMP Regulatory protein Alide_2164 SM00316 Ribosomal protein S1-like RNA-binding domain Alide_2165 SM00267 diguanylate cyclase Alide_2188 SM00091 PAS domain Alide_2188 SM00387 Histidine kinase-like ATPases Alide_2188 SM00388 His Kinase A (phosphoacceptor) domain Alide_2188 SM00448 cheY-homologous receiver domain Alide_2190 SM00421 helix_turn_helix, Lux Regulon Alide_2190 SM00448 cheY-homologous receiver domain Alide_2191 SM00387 Histidine kinase-like ATPases Alide_2204 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide_2206 SM00487 DEAD-like helicases superfamily Alide_2206 SM00490 helicase superfamily c-terminal domain Alide_2211 SM00271 DnaJ molecular chaperone homology domain Alide_2214 SM00479 Alide_2214 Alide_2224 SM00421 helix_turn_helix, Lux Regulon Alide_2224 SM00448 cheY-homologous receiver domain Alide_2225 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_2225 SM00091 PAS domain Alide_2225 SM00387 Histidine kinase-like ATPases Alide_2225 SM00388 His Kinase A (phosphoacceptor) domain Alide_2247 SM00052 Putative diguanylate phosphodiesterase Alide_2247 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_2247 SM00091 PAS domain Alide_2247 SM00267 diguanylate cyclase Alide_2247 SM01079 Alide_2247 Alide_2250 SM00968 SMC proteins Flexible Hinge Domain Alide_2251 SM00771 ZipA, C-terminal domain (FtsZ-binding) Alide_2252 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Alide_2252 SM00292 breast cancer carboxy-terminal domain Alide_2252 SM00532 Ligase N family Alide_2263 SM00822 Alide_2263 Alide_2264 SM00382 ATPases associated with a variety of cellular activities Alide_2276 SM00954 Region found in RelA / SpoT proteins Alide_2282 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_2282 SM00895 Alide_2282 Alide_2286 SM00530 Helix-turn-helix XRE-family like proteins Alide_2290 SM00878 Biotin carboxylase C-terminal domain Alide_2292 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide_2292 SM00876 Biotin and Thiamin Synthesis associated domain Alide_2294 SM00448 cheY-homologous receiver domain Alide_2294 SM00862 Transcriptional regulatory protein, C terminal Alide_2295 SM00387 Histidine kinase-like ATPases Alide_2295 SM00388 His Kinase A (phosphoacceptor) domain Alide_2298 SM00450 Rhodanese Homology Domain Alide_2305 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Alide_2311 SM00354 helix_turn _helix lactose operon repressor Alide_2312 SM00822 Alide_2312 Alide_2315 SM01144 Alide_2315 Alide_2319 SM00448 cheY-homologous receiver domain Alide_2319 SM00862 Transcriptional regulatory protein, C terminal Alide_2320 SM00387 Histidine kinase-like ATPases Alide_2320 SM00388 His Kinase A (phosphoacceptor) domain Alide_2323 SM00829 Enoylreductase Alide_2332 SM00382 ATPases associated with a variety of cellular activities Alide_2333 SM00382 ATPases associated with a variety of cellular activities Alide_2340 SM00861 Transketolase, pyrimidine binding domain Alide_2342 SM00344 helix_turn_helix ASNC type Alide_2346 SM00849 Metallo-beta-lactamase superfamily Alide_2351 SM00829 Enoylreductase Alide_2360 SM00893 Electron transfer flavoprotein domain Alide_2361 SM00893 Electron transfer flavoprotein domain Alide_2364 SM00382 ATPases associated with a variety of cellular activities Alide_2366 SM00460 Transglutaminase/protease-like homologues Alide_2368 SM00861 Transketolase, pyrimidine binding domain Alide_2373 SM00822 Alide_2373 Alide_2375 SM00861 Transketolase, pyrimidine binding domain Alide_2382 SM00382 ATPases associated with a variety of cellular activities Alide_2386 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide_2393 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide_2409 SM00861 Transketolase, pyrimidine binding domain Alide_2416 SM00881 CoA binding domain Alide_2417 SM00346 helix_turn_helix isocitrate lyase regulation Alide_2422 SM00382 ATPases associated with a variety of cellular activities Alide_2427 SM00882 Coenzyme A transferase Alide_2428 SM00882 Coenzyme A transferase Alide_2429 SM00091 PAS domain Alide_2429 SM00421 helix_turn_helix, Lux Regulon Alide_2438 SM00382 ATPases associated with a variety of cellular activities Alide_2439 SM00382 ATPases associated with a variety of cellular activities Alide_2441 SM01130 Alide_2441 Alide_2443 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_2443 SM00895 Alide_2443 Alide_2444 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Alide_2444 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide_2446 SM00382 ATPases associated with a variety of cellular activities Alide_2456 SM00382 ATPases associated with a variety of cellular activities Alide_2456 SM00930 Alide_2456 Alide_2458 SM00493 Alide_2458 Alide_2460 SM00382 ATPases associated with a variety of cellular activities Alide_2468 SM00382 ATPases associated with a variety of cellular activities Alide_2480 SM00357 Cold shock protein domain Alide_2480 SM00382 ATPases associated with a variety of cellular activities Alide_2480 SM00959 Rho termination factor, N-terminal domain Alide_2484 SM00091 PAS domain Alide_2484 SM00387 Histidine kinase-like ATPases Alide_2484 SM00388 His Kinase A (phosphoacceptor) domain Alide_2485 SM00448 cheY-homologous receiver domain Alide_2485 SM00862 Transcriptional regulatory protein, C terminal Alide_2487 SM00382 ATPases associated with a variety of cellular activities Alide_2492 SM00855 Phosphoglycerate mutase family Alide_2495 SM00052 Putative diguanylate phosphodiesterase Alide_2495 SM00267 diguanylate cyclase Alide_2498 SM00382 ATPases associated with a variety of cellular activities Alide_2500 SM01103 Alide_2500 Alide_2504 SM00851 MGS-like domain Alide_2504 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Alide_2505 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Alide_2506 SM00422 helix_turn_helix, mercury resistance Alide_2507 SM00411 bacterial (prokaryotic) histone like domain Alide_2508 SM00873 B3/4 domain Alide_2508 SM00874 tRNA synthetase B5 domain Alide_2508 SM00896 Ferredoxin-fold anticodon binding domain Alide_2513 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Alide_2518 SM00151 SWI complex, BAF60b domains Alide_2526 SM00347 helix_turn_helix multiple antibiotic resistance protein Alide_2541 SM00967 RNA 2'-O ribose methyltransferase substrate binding Alide_2543 SM00382 ATPases associated with a variety of cellular activities Alide_2547 SM00749 bacterial OsmY and nodulation domain Alide_2549 SM00267 diguanylate cyclase Alide_2564 SM00858 Alide_2564 Alide_2566 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Alide_2567 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_2567 SM00895 Alide_2567 Alide_2569 SM01130 Alide_2569 Alide_2572 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Alide_2581 SM00267 diguanylate cyclase Alide_2582 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Alide_2583 SM01130 Alide_2583 Alide_2588 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_2588 SM00895 Alide_2588 Alide_2598 SM00342 helix_turn_helix, arabinose operon control protein Alide_2598 SM00478 endonuclease III Alide_2598 SM01009 AlkA N-terminal domain Alide_2601 SM00240 Forkhead associated domain Alide_2611 SM01211 Alide_2611 Alide_2613 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide_2620 SM01329 Alide_2620 Alide_2631 SM00870 Alide_2631 Alide_2634 SM00382 ATPases associated with a variety of cellular activities Alide_2634 SM00487 DEAD-like helicases superfamily Alide_2634 SM00490 helicase superfamily c-terminal domain Alide_2634 SM00847 Helicase associated domain (HA2) Add an annotation Alide_2639 SM00382 ATPases associated with a variety of cellular activities Alide_2651 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Alide_2659 SM00354 helix_turn _helix lactose operon repressor Alide_2660 SM00382 ATPases associated with a variety of cellular activities Alide_2660 SM01086 C-terminal, D2-small domain, of ClpB protein Alide_2662 SM00481 DNA polymerase alpha chain like domain Alide_2664 SM00491 Alide_2664 Alide_2665 SM00331 Sigma factor PP2C-like phosphatases Alide_2665 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Alide_2670 SM00861 Transketolase, pyrimidine binding domain Alide_2677 SM00382 ATPases associated with a variety of cellular activities Alide_2689 SM00244 prohibitin homologues Alide_2695 SM00831 Cation transporter/ATPase, N-terminus Alide_2714 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Alide_2714 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Alide_2714 SM00493 Alide_2714 Alide_2741 SM00448 cheY-homologous receiver domain Alide_2741 SM00862 Transcriptional regulatory protein, C terminal Alide_2742 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_2742 SM00387 Histidine kinase-like ATPases Alide_2742 SM00388 His Kinase A (phosphoacceptor) domain Alide_2753 SM00530 Helix-turn-helix XRE-family like proteins Alide_2754 SM00411 bacterial (prokaryotic) histone like domain Alide_2759 SM01329 Alide_2759 Alide_2763 SM00858 Alide_2763 Alide_2772 SM00382 ATPases associated with a variety of cellular activities Alide_2774 SM00062 Bacterial periplasmic substrate-binding proteins Alide_2774 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Alide_2775 SM00346 helix_turn_helix isocitrate lyase regulation Alide_2778 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_2778 SM00866 Alide_2778 Alide_2780 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_2780 SM00866 Alide_2780 Alide_2781 SM00382 ATPases associated with a variety of cellular activities Alide_2793 SM00841 Elongation factor P, C-terminal Alide_2793 SM01185 Alide_2793 Alide_2804 SM01060 Alide_2804 Alide_2832 SM00382 ATPases associated with a variety of cellular activities Alide_2843 SM00822 Alide_2843 Alide_2849 SM00382 ATPases associated with a variety of cellular activities Alide_2855 SM00849 Metallo-beta-lactamase superfamily Alide_2855 SM01027 Beta-Casp domain Alide_2872 SM00100 Cyclic nucleotide-monophosphate binding domain Alide_2872 SM00419 helix_turn_helix, cAMP Regulatory protein Alide_2887 SM00878 Biotin carboxylase C-terminal domain Alide_2893 SM00411 bacterial (prokaryotic) histone like domain Alide_2895 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Alide_2895 SM00465 GIY-YIG type nucleases (URI domain) Alide_2898 SM00528 Domain in histone-like proteins of HNS family Alide_2899 SM00346 helix_turn_helix isocitrate lyase regulation Alide_2904 SM00382 ATPases associated with a variety of cellular activities Alide_2905 SM00382 ATPases associated with a variety of cellular activities Alide_2918 SM00829 Enoylreductase Alide_2922 SM00382 ATPases associated with a variety of cellular activities Alide_2923 SM00382 ATPases associated with a variety of cellular activities Alide_2928 SM00893 Electron transfer flavoprotein domain Alide_2929 SM00893 Electron transfer flavoprotein domain Alide_2937 SM00822 Alide_2937 Alide_2941 SM00346 helix_turn_helix isocitrate lyase regulation Alide_2942 SM00346 helix_turn_helix isocitrate lyase regulation Alide_2952 SM00822 Alide_2952 Alide_2971 SM00382 ATPases associated with a variety of cellular activities Alide_2972 SM00382 ATPases associated with a variety of cellular activities Alide_2986 SM00382 ATPases associated with a variety of cellular activities Alide_2986 SM00464 Found in ATP-dependent protease La (LON) Alide_2987 SM00382 ATPases associated with a variety of cellular activities Alide_2987 SM00994 ClpX C4-type zinc finger Alide_2987 SM01086 C-terminal, D2-small domain, of ClpB protein Alide_2994 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_2994 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_3008 SM00448 cheY-homologous receiver domain Alide_3008 SM00862 Transcriptional regulatory protein, C terminal Alide_3009 SM00387 Histidine kinase-like ATPases Alide_3009 SM00388 His Kinase A (phosphoacceptor) domain Alide_3015 SM00382 ATPases associated with a variety of cellular activities Alide_3015 SM00448 cheY-homologous receiver domain Alide_3016 SM00387 Histidine kinase-like ATPases Alide_3016 SM00388 His Kinase A (phosphoacceptor) domain Alide_3018 SM01230 Alide_3018 Alide_3019 SM00852 Probable molybdopterin binding domain Alide_3026 SM00788 Adenylosuccinate synthetase Alide_3029 SM00244 prohibitin homologues Alide_3030 SM00244 prohibitin homologues Alide_3034 SM00564 beta-propeller repeat Alide_3039 SM00028 Tetratricopeptide repeats Alide_3041 SM00562 Alide_3041 Alide_3042 SM00363 S4 RNA-binding domain Alide_3044 SM00363 S4 RNA-binding domain Alide_3045 SM00257 Lysin motif Alide_3048 SM00267 diguanylate cyclase Alide_3057 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Alide_3057 SM00534 ATPase domain of DNA mismatch repair MUTS family Alide_3067 SM00448 cheY-homologous receiver domain Alide_3067 SM00850 LytTr DNA-binding domain Alide_3072 SM00528 Domain in histone-like proteins of HNS family Alide_3078 SM00900 Alide_3078 Alide_3079 SM00710 Parallel beta-helix repeats Alide_3079 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses Alide_3080 SM00382 ATPases associated with a variety of cellular activities Alide_3084 SM00487 DEAD-like helicases superfamily Alide_3084 SM00490 helicase superfamily c-terminal domain Alide_3098 SM00062 Bacterial periplasmic substrate-binding proteins Alide_3103 SM01329 Alide_3103 Alide_3105 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3105 SM00895 Alide_3105 Alide_3110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_3112 SM00919 Malic enzyme, NAD binding domain Alide_3112 SM01274 Alide_3112 Alide_3113 SM00867 YceI-like domain Alide_3114 SM00867 YceI-like domain Alide_3118 SM00670 Large family of predicted nucleotide-binding domains Alide_3120 SM00382 ATPases associated with a variety of cellular activities Alide_3127 SM00271 DnaJ molecular chaperone homology domain Alide_3137 SM00849 Metallo-beta-lactamase superfamily Alide_3137 SM01027 Beta-Casp domain Alide_3142 SM01329 Alide_3142 Alide_3143 SM00859 Semialdehyde dehydrogenase, NAD binding domain Alide_3151 SM00464 Found in ATP-dependent protease La (LON) Alide_3165 SM00382 ATPases associated with a variety of cellular activities Alide_3166 SM00382 ATPases associated with a variety of cellular activities Alide_3173 SM00358 Double-stranded RNA binding motif Alide_3173 SM00535 Ribonuclease III family Alide_3176 SM00838 Elongation factor G C-terminus Alide_3177 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide_3182 SM00825 Beta-ketoacyl synthase Alide_3183 SM00823 Phosphopantetheine attachment site Alide_3184 SM00822 Alide_3184 Alide_3185 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Alide_3195 SM00363 S4 RNA-binding domain Alide_3196 SM00316 Ribosomal protein S1-like RNA-binding domain Alide_3198 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Alide_3200 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_3200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_3209 SM00267 diguanylate cyclase Alide_3209 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_3215 SM00881 CoA binding domain Alide_3217 SM00870 Alide_3217 Alide_3221 SM01359 Alide_3221 Alide_3221 SM01360 Alide_3221 Alide_3228 SM00763 PrkA AAA domain Alide_3237 SM00871 Bacterial transcription activator, effector binding domain Alide_3241 SM00478 endonuclease III Alide_3241 SM00525 Alide_3241 Alide_3242 SM00506 Appr-1"-p processing enzyme Alide_3254 SM00155 Phospholipase D. Active site motifs. Alide_3260 SM00382 ATPases associated with a variety of cellular activities Alide_3260 SM01086 C-terminal, D2-small domain, of ClpB protein Alide_3265 SM01130 Alide_3265 Alide_3267 SM00852 Probable molybdopterin binding domain Alide_3278 SM00893 Electron transfer flavoprotein domain Alide_3279 SM00893 Electron transfer flavoprotein domain Alide_3286 SM00881 CoA binding domain Alide_3293 SM00346 helix_turn_helix isocitrate lyase regulation Alide_3309 SM00382 ATPases associated with a variety of cellular activities Alide_3317 SM00052 Putative diguanylate phosphodiesterase Alide_3317 SM00091 PAS domain Alide_3317 SM00267 diguanylate cyclase Alide_3318 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide_3320 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide_3321 SM00100 Cyclic nucleotide-monophosphate binding domain Alide_3321 SM00419 helix_turn_helix, cAMP Regulatory protein Alide_3336 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3336 SM00895 Alide_3336 Alide_3344 SM00382 ATPases associated with a variety of cellular activities Alide_3348 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_3348 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_3349 SM00481 DNA polymerase alpha chain like domain Alide_3351 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_3354 SM00448 cheY-homologous receiver domain Alide_3354 SM00862 Transcriptional regulatory protein, C terminal Alide_3355 SM00257 Lysin motif Alide_3356 SM00387 Histidine kinase-like ATPases Alide_3356 SM01080 Alide_3356 Alide_3361 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide_3362 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide_3362 SM01091 Transporter associated domain Alide_3367 SM00463 Small MutS-related domain Alide_3372 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3372 SM00866 Alide_3372 Alide_3383 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide_3389 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide_3390 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide_3393 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3393 SM00866 Alide_3393 Alide_3402 SM00450 Rhodanese Homology Domain Alide_3407 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3411 SM00342 helix_turn_helix, arabinose operon control protein Alide_3419 SM00342 helix_turn_helix, arabinose operon control protein Alide_3437 SM00450 Rhodanese Homology Domain Alide_3438 SM00855 Phosphoglycerate mutase family Alide_3439 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide_3439 SM00245 tail specific protease Alide_3441 SM00448 cheY-homologous receiver domain Alide_3442 SM00421 helix_turn_helix, Lux Regulon Alide_3442 SM00448 cheY-homologous receiver domain Alide_3443 SM00387 Histidine kinase-like ATPases Alide_3446 SM00749 bacterial OsmY and nodulation domain Alide_3451 SM00382 ATPases associated with a variety of cellular activities Alide_3451 SM00962 SRP54-type protein, GTPase domain Alide_3451 SM00963 SRP54-type protein, helical bundle domain Alide_3453 SM01130 Alide_3453 Alide_3456 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Alide_3461 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3461 SM00895 Alide_3461 Alide_3462 SM00062 Bacterial periplasmic substrate-binding proteins Alide_3464 SM00829 Enoylreductase Alide_3466 SM00448 cheY-homologous receiver domain Alide_3466 SM00862 Transcriptional regulatory protein, C terminal Alide_3467 SM00387 Histidine kinase-like ATPases Alide_3467 SM00388 His Kinase A (phosphoacceptor) domain Alide_3497 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3497 SM00866 Alide_3497 Alide_3513 SM00882 Coenzyme A transferase Alide_3514 SM00882 Coenzyme A transferase Alide_3515 SM00346 helix_turn_helix isocitrate lyase regulation Alide_3519 SM00382 ATPases associated with a variety of cellular activities Alide_3522 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3522 SM00866 Alide_3522 Alide_3560 SM00470 ParB-like nuclease domain Alide_3599 SM00530 Helix-turn-helix XRE-family like proteins Alide_3616 SM00155 Phospholipase D. Active site motifs. Alide_3617 SM00387 Histidine kinase-like ATPases Alide_3617 SM00388 His Kinase A (phosphoacceptor) domain Alide_3618 SM00448 cheY-homologous receiver domain Alide_3618 SM00862 Transcriptional regulatory protein, C terminal Alide_3619 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide_3622 SM00382 ATPases associated with a variety of cellular activities Alide_3623 SM00563 Phosphate acyltransferases Alide_3627 SM00732 Likely ribonuclease with RNase H fold. Alide_3629 SM00073 Histidine Phosphotransfer domain Alide_3629 SM00260 Two component signalling adaptor domain Alide_3629 SM00387 Histidine kinase-like ATPases Alide_3629 SM00448 cheY-homologous receiver domain Alide_3629 SM01231 Alide_3629 Alide_3630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_3631 SM00260 Two component signalling adaptor domain Alide_3632 SM00448 cheY-homologous receiver domain Alide_3633 SM00448 cheY-homologous receiver domain Alide_3637 SM00798 AICARFT/IMPCHase bienzyme Alide_3637 SM00851 MGS-like domain Alide_3646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_3646 SM00387 Histidine kinase-like ATPases Alide_3646 SM00388 His Kinase A (phosphoacceptor) domain Alide_3647 SM00448 cheY-homologous receiver domain Alide_3647 SM00862 Transcriptional regulatory protein, C terminal Alide_3654 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide_3655 SM00382 ATPases associated with a variety of cellular activities Alide_3655 SM00962 SRP54-type protein, GTPase domain Alide_3655 SM00963 SRP54-type protein, helical bundle domain Alide_3658 SM00387 Histidine kinase-like ATPases Alide_3658 SM00388 His Kinase A (phosphoacceptor) domain Alide_3659 SM00382 ATPases associated with a variety of cellular activities Alide_3659 SM00448 cheY-homologous receiver domain Alide_3660 SM00644 Alide_3660 Alide_3667 SM00878 Biotin carboxylase C-terminal domain Alide_3681 SM00955 Alide_3681 Alide_3694 SM00346 helix_turn_helix isocitrate lyase regulation Alide_3697 SM00822 Alide_3697 Alide_3701 SM00864 Tubulin/FtsZ family, GTPase domain Alide_3701 SM00865 Tubulin/FtsZ family, C-terminal domain Alide_3702 SM00842 Cell division protein FtsA Alide_3716 SM00382 ATPases associated with a variety of cellular activities Alide_3716 SM01086 C-terminal, D2-small domain, of ClpB protein Alide_3720 SM00833 Cobalamin synthesis protein cobW C-terminal domain Alide_3721 SM00448 cheY-homologous receiver domain Alide_3722 SM00448 cheY-homologous receiver domain Alide_3723 SM00448 cheY-homologous receiver domain Alide_3725 SM00448 cheY-homologous receiver domain Alide_3726 SM00448 cheY-homologous receiver domain Alide_3727 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide_3728 SM00091 PAS domain Alide_3728 SM00387 Histidine kinase-like ATPases Alide_3728 SM00388 His Kinase A (phosphoacceptor) domain Alide_3729 SM00387 Histidine kinase-like ATPases Alide_3729 SM00388 His Kinase A (phosphoacceptor) domain Alide_3730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_3730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_3734 SM00849 Metallo-beta-lactamase superfamily Alide_3735 SM00363 S4 RNA-binding domain Alide_3747 SM00347 helix_turn_helix multiple antibiotic resistance protein Alide_3748 SM00822 Alide_3748 Alide_3752 SM00893 Electron transfer flavoprotein domain Alide_3753 SM00893 Electron transfer flavoprotein domain Alide_3783 SM00382 ATPases associated with a variety of cellular activities Alide_3790 SM00479 Alide_3790 Alide_3791 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide_3797 SM00878 Biotin carboxylase C-terminal domain Alide_3802 SM00342 helix_turn_helix, arabinose operon control protein Alide_3807 SM00382 ATPases associated with a variety of cellular activities Alide_3808 SM00382 ATPases associated with a variety of cellular activities Alide_3811 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3814 SM00267 diguanylate cyclase Alide_3817 SM00052 Putative diguanylate phosphodiesterase Alide_3817 SM00267 diguanylate cyclase Alide_3832 SM00947 Carbonic anhydrase Alide_3834 SM00422 helix_turn_helix, mercury resistance Alide_3835 SM00382 ATPases associated with a variety of cellular activities Alide_3836 SM00448 cheY-homologous receiver domain Alide_3838 SM00138 Methyltransferase, chemotaxis proteins Alide_3839 SM00260 Two component signalling adaptor domain Alide_3840 SM00073 Histidine Phosphotransfer domain Alide_3840 SM00260 Two component signalling adaptor domain Alide_3840 SM00387 Histidine kinase-like ATPases Alide_3840 SM01231 Alide_3840 Alide_3841 SM00448 cheY-homologous receiver domain Alide_3843 SM00387 Histidine kinase-like ATPases Alide_3843 SM00448 cheY-homologous receiver domain Alide_3844 SM00421 helix_turn_helix, Lux Regulon Alide_3844 SM00448 cheY-homologous receiver domain Alide_3854 SM00382 ATPases associated with a variety of cellular activities Alide_3868 SM00448 cheY-homologous receiver domain Alide_3872 SM00382 ATPases associated with a variety of cellular activities Alide_3872 SM00962 SRP54-type protein, GTPase domain Alide_3877 SM00858 Alide_3877 Alide_3886 SM00047 Lysozyme subfamily 2 Alide_3891 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3900 SM00855 Phosphoglycerate mutase family Alide_3901 SM00267 diguanylate cyclase Alide_3912 SM00487 DEAD-like helicases superfamily Alide_3912 SM00490 helicase superfamily c-terminal domain Alide_3917 SM00382 ATPases associated with a variety of cellular activities Alide_3921 SM00382 ATPases associated with a variety of cellular activities Alide_3933 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3933 SM00895 Alide_3933 Alide_3938 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_3938 SM00091 PAS domain Alide_3943 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_3943 SM00895 Alide_3943 Alide_3944 SM00563 Phosphate acyltransferases Alide_3945 SM00382 ATPases associated with a variety of cellular activities Alide_3953 SM00897 FIST N domain Alide_3953 SM01204 Alide_3953 Alide_3955 SM00411 bacterial (prokaryotic) histone like domain Alide_3958 SM00662 RNA polymerases D Alide_3959 SM00363 S4 RNA-binding domain Alide_3959 SM01390 Alide_3959 Alide_3972 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Alide_3973 SM01374 Alide_3973 Alide_3975 SM00419 helix_turn_helix, cAMP Regulatory protein Alide_3975 SM00420 helix_turn_helix, Deoxyribose operon repressor Alide_3975 SM01134 Alide_3975 Alide_3982 SM00487 DEAD-like helicases superfamily Alide_3982 SM00490 helicase superfamily c-terminal domain Alide_3983 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide_3989 SM00986 Uracil DNA glycosylase superfamily Alide_3989 SM00987 UreE urease accessory protein, C-terminal domain Alide_4004 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Alide_4004 SM00493 Alide_4004 Alide_4005 SM00382 ATPases associated with a variety of cellular activities Alide_4011 SM00487 DEAD-like helicases superfamily Alide_4036 SM00953 Alide_4036 Alide_4045 SM00382 ATPases associated with a variety of cellular activities Alide_4048 SM00953 Alide_4048 Alide_4050 SM00830 Chorismate mutase type II Alide_4052 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_4052 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_4053 SM00052 Putative diguanylate phosphodiesterase Alide_4053 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_4053 SM00091 PAS domain Alide_4053 SM00267 diguanylate cyclase Alide_4053 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_4066 SM00382 ATPases associated with a variety of cellular activities Alide_4072 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_4072 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_4073 SM00052 Putative diguanylate phosphodiesterase Alide_4073 SM00267 diguanylate cyclase Alide_4073 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_4074 SM00448 cheY-homologous receiver domain Alide_4074 SM01012 Alide_4074 Alide_4078 SM00981 Alide_4078 Alide_4079 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_4079 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_4082 SM00382 ATPases associated with a variety of cellular activities Alide_4086 SM00836 DALR anticodon binding domain Alide_4086 SM01016 Arginyl tRNA synthetase N terminal dom Alide_4090 SM00387 Histidine kinase-like ATPases Alide_4090 SM00388 His Kinase A (phosphoacceptor) domain Alide_4090 SM00448 cheY-homologous receiver domain Alide_4091 SM00421 helix_turn_helix, Lux Regulon Alide_4091 SM00448 cheY-homologous receiver domain Alide_4107 SM00235 Zinc-dependent metalloprotease Alide_4115 SM00382 ATPases associated with a variety of cellular activities Alide_4117 SM00052 Putative diguanylate phosphodiesterase Alide_4117 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Alide_4117 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_4117 SM00091 PAS domain Alide_4117 SM00267 diguanylate cyclase Alide_4128 SM01001 AIR carboxylase Alide_4139 SM01126 Alide_4139 Alide_4156 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Alide_4156 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Alide_4160 SM01011 Aminopeptidase P, N-terminal domain Alide_4169 SM00861 Transketolase, pyrimidine binding domain Alide_4170 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Alide_4186 SM00871 Bacterial transcription activator, effector binding domain Alide_4189 SM01144 Alide_4189 Alide_4190 SM00346 helix_turn_helix isocitrate lyase regulation Alide_4194 SM00881 CoA binding domain Alide_4198 SM00151 SWI complex, BAF60b domains Alide_4198 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Alide_4198 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Alide_4198 SM00493 Alide_4198 Alide_4199 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Alide_4202 SM00829 Enoylreductase Alide_4207 SM00347 helix_turn_helix multiple antibiotic resistance protein Alide_4209 SM00953 Alide_4209 Alide_4212 SM00387 Histidine kinase-like ATPases Alide_4212 SM00388 His Kinase A (phosphoacceptor) domain Alide_4213 SM00448 cheY-homologous receiver domain Alide_4213 SM00862 Transcriptional regulatory protein, C terminal Alide_4216 SM00382 ATPases associated with a variety of cellular activities Alide_4218 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_4218 SM00895 Alide_4218 Alide_4223 SM01005 Alanine racemase, C-terminal domain Alide_4225 SM00344 helix_turn_helix ASNC type Alide_4227 SM00382 ATPases associated with a variety of cellular activities Alide_4232 SM01323 Alide_4232 Alide_4234 SM00344 helix_turn_helix ASNC type Alide_4236 SM00925 MltA specific insert domain Alide_4239 SM00421 helix_turn_helix, Lux Regulon Alide_4239 SM00448 cheY-homologous receiver domain Alide_4240 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide_4240 SM00091 PAS domain Alide_4240 SM00387 Histidine kinase-like ATPases Alide_4240 SM00388 His Kinase A (phosphoacceptor) domain Alide_4248 SM01322 Alide_4248 Alide_4261 SM00849 Metallo-beta-lactamase superfamily Alide_4262 SM00240 Forkhead associated domain Alide_4263 SM00331 Sigma factor PP2C-like phosphatases Alide_4263 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Alide_4265 SM00881 CoA binding domain Alide_4267 SM00859 Semialdehyde dehydrogenase, NAD binding domain Alide_4269 SM00257 Lysin motif Alide_4279 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Alide_4283 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide_4283 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide_4287 SM00346 helix_turn_helix isocitrate lyase regulation Alide_4292 SM00822 Alide_4292 Alide_4307 SM00382 ATPases associated with a variety of cellular activities Alide_4310 SM00881 CoA binding domain Alide_4311 SM00878 Biotin carboxylase C-terminal domain Alide_4318 SM00346 helix_turn_helix isocitrate lyase regulation Alide_4325 SM00387 Histidine kinase-like ATPases Alide_4326 SM00448 cheY-homologous receiver domain Alide_4326 SM00862 Transcriptional regulatory protein, C terminal Alide_4337 SM00831 Cation transporter/ATPase, N-terminus Alide_4343 SM00346 helix_turn_helix isocitrate lyase regulation Alide_4345 SM00829 Enoylreductase Alide_4349 SM00346 helix_turn_helix isocitrate lyase regulation Alide_4365 SM00267 diguanylate cyclase Alide_4366 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide_4366 SM00895 Alide_4366 Alide_4370 SM00382 ATPases associated with a variety of cellular activities Alide_4371 SM00382 ATPases associated with a variety of cellular activities Alide_4374 SM00919 Malic enzyme, NAD binding domain Alide_4374 SM01274 Alide_4374 Alide_4377 SM00650 Ribosomal RNA adenine dimethylases Alide_4386 SM00267 diguanylate cyclase Alide_4393 SM00360 RNA recognition motif Alide_4394 SM00360 RNA recognition motif Alide_4395 SM00822 Alide_4395 Alide_4398 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide_4402 SM00100 Cyclic nucleotide-monophosphate binding domain Alide_4404 SM00062 Bacterial periplasmic substrate-binding proteins Alide_4413 SM00382 ATPases associated with a variety of cellular activities Alide_4420 SM01234 Alide_4420 Alide_4424 SM00493 Alide_4424 Alide_4426 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Alide_4426 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Alide_4426 SM00493 Alide_4426 Alide_4437 SM00470 ParB-like nuclease domain Alide_4452 SM00382 ATPases associated with a variety of cellular activities Alide_4456 SM00857 Resolvase, N terminal domain Alide_4464 SM00822 Alide_4464 Alide_4472 SM00530 Helix-turn-helix XRE-family like proteins Alide_4476 SM00382 ATPases associated with a variety of cellular activities Alide_4489 SM00857 Resolvase, N terminal domain Alide_4496 SM00857 Resolvase, N terminal domain Alide_4498 SM00422 helix_turn_helix, mercury resistance Alide_4503 SM00422 helix_turn_helix, mercury resistance Alide_4506 SM00342 helix_turn_helix, arabinose operon control protein Alide_4514 SM00857 Resolvase, N terminal domain Alide_4520 SM00528 Domain in histone-like proteins of HNS family Alide_4521 SM00528 Domain in histone-like proteins of HNS family Alide_4525 SM00052 Putative diguanylate phosphodiesterase Alide_4546 SM00671 Sel1-like repeats. Alide_4548 SM00382 ATPases associated with a variety of cellular activities Alide_4552 SM00382 ATPases associated with a variety of cellular activities Alide_4611 SM00887 Ethylbenzene dehydrogenase Alide_4620 SM00382 ATPases associated with a variety of cellular activities Alide_4625 SM00487 DEAD-like helicases superfamily Alide_4630 SM00411 bacterial (prokaryotic) histone like domain Alide_4638 SM00857 Resolvase, N terminal domain