Alide_2594 69840f11503e92940901f93a85436c23 324 PIRSF PIRSF017082 1 323 9.1E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2594 69840f11503e92940901f93a85436c23 324 Gene3D G3DSA:3.40.190.10 126 249 1.6E-112 T 12-10-2018 Alide_2594 69840f11503e92940901f93a85436c23 324 Gene3D G3DSA:3.40.190.150 28 313 1.6E-112 T 12-10-2018 Alide_2594 69840f11503e92940901f93a85436c23 324 SUPERFAMILY SSF53850 109 289 3.51E-14 T 12-10-2018 Alide_2594 69840f11503e92940901f93a85436c23 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 320 1.2E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 387 514 3.3E-42 T 12-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 Gene3D G3DSA:3.40.50.300 99 387 3.5E-128 T 12-10-2018 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 154 380 5.5E-73 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 SUPERFAMILY SSF52540 101 386 1.36E-91 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 519 48.767 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 Gene3D G3DSA:1.20.150.20 388 519 2.2E-46 T 12-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 519 1.2E-240 T 12-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 SUPERFAMILY SSF50615 10 99 4.91E-26 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 Gene3D G3DSA:2.40.30.20 1 98 7.4E-32 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 SUPERFAMILY SSF47917 388 518 4.71E-43 T 12-10-2018 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 371 380 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_0437 d7063a25a105ebfad80eba7d3cfb2d21 519 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 97 5.4E-14 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_1995 ebe34ca3cf8b309a559a341d5c11666b 329 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 14 248 1.0E-100 T 12-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 Alide_1995 ebe34ca3cf8b309a559a341d5c11666b 329 Gene3D G3DSA:1.10.287.90 28 113 2.0E-31 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1995 ebe34ca3cf8b309a559a341d5c11666b 329 Gene3D G3DSA:2.60.40.420 114 290 1.3E-50 T 12-10-2018 IPR008972 Cupredoxin Alide_1995 ebe34ca3cf8b309a559a341d5c11666b 329 SUPERFAMILY SSF49503 133 290 1.72E-47 T 12-10-2018 IPR008972 Cupredoxin Alide_1995 ebe34ca3cf8b309a559a341d5c11666b 329 Pfam PF06481 COX Aromatic Rich Motif 248 293 3.4E-19 T 12-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 Alide_1995 ebe34ca3cf8b309a559a341d5c11666b 329 SUPERFAMILY SSF81464 31 118 1.55E-22 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1995 ebe34ca3cf8b309a559a341d5c11666b 329 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 159 229 6.4E-7 T 12-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1995 ebe34ca3cf8b309a559a341d5c11666b 329 PIRSF PIRSF000292 2 319 5.2E-124 T 12-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 Alide_4262 2955dda048bc1f4fc442aa6cefdbff6f 208 SUPERFAMILY SSF49879 126 206 6.7E-8 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 Alide_4262 2955dda048bc1f4fc442aa6cefdbff6f 208 Gene3D G3DSA:2.60.200.20 1 105 5.6E-26 T 12-10-2018 Alide_4262 2955dda048bc1f4fc442aa6cefdbff6f 208 SUPERFAMILY SSF49879 3 103 2.68E-27 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 Alide_4262 2955dda048bc1f4fc442aa6cefdbff6f 208 Pfam PF00498 FHA domain 23 86 2.7E-17 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Alide_4262 2955dda048bc1f4fc442aa6cefdbff6f 208 SMART SM00240 22 72 2.5E-14 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Alide_0680 255c1604ac7bc4ff30f476f83ab3e275 258 Gene3D G3DSA:1.10.12.10 201 257 6.8E-13 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_0680 255c1604ac7bc4ff30f476f83ab3e275 258 Gene3D G3DSA:3.90.226.10 5 200 4.8E-64 T 12-10-2018 Alide_0680 255c1604ac7bc4ff30f476f83ab3e275 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 256 2.8E-52 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_0680 255c1604ac7bc4ff30f476f83ab3e275 258 SUPERFAMILY SSF52096 4 256 3.11E-76 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0445 5a6391435b3336106f9451e06eac02f8 177 Gene3D G3DSA:3.10.310.50 22 175 7.7E-44 T 12-10-2018 Alide_0445 5a6391435b3336106f9451e06eac02f8 177 Pfam PF04536 TPM domain 35 149 2.8E-12 T 12-10-2018 IPR007621 TPM domain Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 Gene3D G3DSA:1.10.3210.10 29 221 1.7E-74 T 12-10-2018 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 Gene3D G3DSA:3.30.70.260 673 751 1.4E-9 T 12-10-2018 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 SMART SM00471 71 183 8.7E-10 T 12-10-2018 IPR003607 HD/PDEase domain Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 SUPERFAMILY SSF81301 211 422 6.87E-56 T 12-10-2018 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 SUPERFAMILY SSF109604 40 221 3.11E-70 T 12-10-2018 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 56 745 1.5E-210 T 12-10-2018 IPR004811 RelA/SpoT family GO:0015969 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 Gene3D G3DSA:3.30.460.10 223 355 2.4E-40 T 12-10-2018 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 Pfam PF04607 Region found in RelA / SpoT proteins 265 375 3.5E-32 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 Pfam PF13328 HD domain 56 205 5.4E-49 T 12-10-2018 IPR003607 HD/PDEase domain Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 SUPERFAMILY SSF81271 405 477 9.16E-20 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 Gene3D G3DSA:3.10.20.30 411 484 4.4E-28 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 Pfam PF13291 ACT domain 673 748 2.3E-14 T 12-10-2018 IPR002912 ACT domain Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 SUPERFAMILY SSF55021 677 750 6.25E-6 T 12-10-2018 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 Pfam PF02824 TGS domain 418 477 4.1E-19 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Alide_1038 700d24086e477ead3a20c6c67f48c97b 754 SMART SM00954 265 375 1.4E-59 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 Alide_1728 a4beb3b350ee839ade62ec38c1e6663f 256 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 3 255 1.4E-99 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Alide_1728 a4beb3b350ee839ade62ec38c1e6663f 256 Gene3D G3DSA:3.60.15.10 1 255 1.1E-83 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_1728 a4beb3b350ee839ade62ec38c1e6663f 256 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 167 255 6.6E-26 T 12-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Alide_1728 a4beb3b350ee839ade62ec38c1e6663f 256 PIRSF PIRSF005457 1 255 3.5E-99 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Alide_1728 a4beb3b350ee839ade62ec38c1e6663f 256 Pfam PF00753 Metallo-beta-lactamase superfamily 11 166 1.8E-17 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_1728 a4beb3b350ee839ade62ec38c1e6663f 256 SMART SM00849 9 166 1.5E-34 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_1728 a4beb3b350ee839ade62ec38c1e6663f 256 ProSitePatterns PS00743 Beta-lactamases class B signature 1. 47 67 - T 12-10-2018 IPR001018 Beta-lactamase, class-B, conserved site GO:0008270|GO:0008800|GO:0017001 Alide_1728 a4beb3b350ee839ade62ec38c1e6663f 256 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 255 40.841 T 12-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 Alide_1728 a4beb3b350ee839ade62ec38c1e6663f 256 SUPERFAMILY SSF56281 3 255 8.12E-68 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_0592 16aabff96ae0a079c9150bc453d7c49c 130 Gene3D G3DSA:3.30.1130.10 3 129 9.2E-32 T 12-10-2018 Alide_0592 16aabff96ae0a079c9150bc453d7c49c 130 SUPERFAMILY SSF55620 16 120 5.17E-23 T 12-10-2018 Alide_0592 16aabff96ae0a079c9150bc453d7c49c 130 Pfam PF02152 Dihydroneopterin aldolase 18 121 2.3E-21 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Alide_0592 16aabff96ae0a079c9150bc453d7c49c 130 SMART SM00905 17 127 2.5E-29 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Alide_0592 16aabff96ae0a079c9150bc453d7c49c 130 TIGRFAM TIGR00526 folB_dom: FolB domain 16 126 1.1E-13 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Alide_2999 e2d3d5e31a0ebe7f7b477da9d71dcf8b 474 Gene3D G3DSA:3.30.465.10 95 216 1.4E-46 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Alide_2999 e2d3d5e31a0ebe7f7b477da9d71dcf8b 474 Gene3D G3DSA:3.30.43.10 1 93 2.7E-26 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Alide_2999 e2d3d5e31a0ebe7f7b477da9d71dcf8b 474 Gene3D G3DSA:1.10.45.10 432 471 2.2E-17 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Alide_2999 e2d3d5e31a0ebe7f7b477da9d71dcf8b 474 Gene3D G3DSA:3.30.70.2740 344 431 1.7E-27 T 12-10-2018 Alide_2999 e2d3d5e31a0ebe7f7b477da9d71dcf8b 474 Gene3D G3DSA:3.30.70.2190 217 343 5.5E-35 T 12-10-2018 Alide_2999 e2d3d5e31a0ebe7f7b477da9d71dcf8b 474 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 469 4.2E-50 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Alide_2999 e2d3d5e31a0ebe7f7b477da9d71dcf8b 474 Pfam PF01565 FAD binding domain 40 177 2.3E-36 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Alide_2999 e2d3d5e31a0ebe7f7b477da9d71dcf8b 474 SUPERFAMILY SSF55103 190 472 1.8E-57 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Alide_2999 e2d3d5e31a0ebe7f7b477da9d71dcf8b 474 SUPERFAMILY SSF56176 4 217 8.56E-78 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_4104 a5bf57b39d4fde5183f5910dc357369f 444 SUPERFAMILY SSF53720 30 442 7.33E-113 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_4104 a5bf57b39d4fde5183f5910dc357369f 444 Gene3D G3DSA:3.40.309.10 248 401 2.6E-158 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_4104 a5bf57b39d4fde5183f5910dc357369f 444 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 35 433 2.6E-142 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Alide_4104 a5bf57b39d4fde5183f5910dc357369f 444 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 27 443 39.464 T 12-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Alide_4104 a5bf57b39d4fde5183f5910dc357369f 444 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 350 371 - T 12-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Alide_4104 a5bf57b39d4fde5183f5910dc357369f 444 PIRSF PIRSF000151 20 444 1.0E-164 T 12-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Alide_4104 a5bf57b39d4fde5183f5910dc357369f 444 Pfam PF00171 Aldehyde dehydrogenase family 336 400 3.2E-7 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_4104 a5bf57b39d4fde5183f5910dc357369f 444 Pfam PF00171 Aldehyde dehydrogenase family 34 302 1.2E-12 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_4104 a5bf57b39d4fde5183f5910dc357369f 444 Gene3D G3DSA:3.40.605.10 34 440 2.6E-158 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_2543 35717ec6404bd93c6b5014dd9a7973dd 240 SUPERFAMILY SSF52540 23 240 2.9E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2543 35717ec6404bd93c6b5014dd9a7973dd 240 Gene3D G3DSA:3.40.50.300 22 240 5.5E-69 T 12-10-2018 Alide_2543 35717ec6404bd93c6b5014dd9a7973dd 240 Pfam PF00005 ABC transporter 43 189 4.8E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2543 35717ec6404bd93c6b5014dd9a7973dd 240 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2543 35717ec6404bd93c6b5014dd9a7973dd 240 SMART SM00382 52 238 1.1E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 SMART SM00363 349 410 6.4E-6 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 Gene3D G3DSA:3.40.50.620 17 232 1.8E-67 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 13 409 46.277 T 12-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 67 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 Pfam PF00579 tRNA synthetases class I (W and Y) 47 329 4.3E-74 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 Gene3D G3DSA:3.10.290.10 340 409 8.5E-17 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 226 238 4.1E-25 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 176 191 4.1E-25 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 61 83 4.1E-25 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 193 215 4.1E-25 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 21 408 2.2E-114 T 12-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 Gene3D G3DSA:1.10.240.10 233 339 6.3E-30 T 12-10-2018 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 SUPERFAMILY SSF52374 20 327 2.09E-86 T 12-10-2018 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 SUPERFAMILY SSF55174 331 406 5.63E-18 T 12-10-2018 Alide_0714 3d1bb57773f24c868caee6c1d8a6d1fc 410 Pfam PF01479 S4 domain 354 393 2.7E-9 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0697 792a301a3cff950b82fc715f47142da6 245 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0697 792a301a3cff950b82fc715f47142da6 245 PIRSF PIRSF039085 1 244 4.1E-100 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Alide_0697 792a301a3cff950b82fc715f47142da6 245 SMART SM00382 26 213 1.4E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0697 792a301a3cff950b82fc715f47142da6 245 SUPERFAMILY SSF52540 1 230 1.82E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0697 792a301a3cff950b82fc715f47142da6 245 Pfam PF00005 ABC transporter 17 165 3.9E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0697 792a301a3cff950b82fc715f47142da6 245 Gene3D G3DSA:3.40.50.300 1 243 8.0E-71 T 12-10-2018 Alide_4399 63fdf0f2f24ed0ff6e08ea0f0b817e99 661 Pfam PF02254 TrkA-N domain 416 529 5.3E-24 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Alide_4399 63fdf0f2f24ed0ff6e08ea0f0b817e99 661 Gene3D G3DSA:3.40.50.720 413 571 6.7E-38 T 12-10-2018 Alide_4399 63fdf0f2f24ed0ff6e08ea0f0b817e99 661 Gene3D G3DSA:3.30.70.1450 585 659 1.1E-6 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Alide_4399 63fdf0f2f24ed0ff6e08ea0f0b817e99 661 Gene3D G3DSA:1.20.1530.20 2 390 1.3E-82 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily Alide_4399 63fdf0f2f24ed0ff6e08ea0f0b817e99 661 Pfam PF02080 TrkA-C domain 590 658 1.2E-8 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Alide_4399 63fdf0f2f24ed0ff6e08ea0f0b817e99 661 Pfam PF00999 Sodium/hydrogen exchanger family 7 379 8.7E-65 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Alide_4399 63fdf0f2f24ed0ff6e08ea0f0b817e99 661 SUPERFAMILY SSF51735 413 553 1.32E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4399 63fdf0f2f24ed0ff6e08ea0f0b817e99 661 SUPERFAMILY SSF116726 578 656 4.84E-9 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Alide_4399 63fdf0f2f24ed0ff6e08ea0f0b817e99 661 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 11 290 2.6E-72 T 12-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 Alide_0716 7620701fc8227c32ad0814f27e992706 474 Gene3D G3DSA:3.90.550.10 1 233 6.7E-62 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0716 7620701fc8227c32ad0814f27e992706 474 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 3 469 40.217 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 Alide_0716 7620701fc8227c32ad0814f27e992706 474 SUPERFAMILY SSF53448 5 258 5.86E-63 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0716 7620701fc8227c32ad0814f27e992706 474 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 297 329 1.7E-6 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_0716 7620701fc8227c32ad0814f27e992706 474 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 335 369 1.2E-6 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_0716 7620701fc8227c32ad0814f27e992706 474 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 412 446 2.8E-5 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_0716 7620701fc8227c32ad0814f27e992706 474 SUPERFAMILY SSF51161 278 455 1.18E-43 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily Alide_0716 7620701fc8227c32ad0814f27e992706 474 Gene3D G3DSA:2.160.10.10 235 473 6.8E-62 T 12-10-2018 Alide_0716 7620701fc8227c32ad0814f27e992706 474 Pfam PF12804 MobA-like NTP transferase domain 7 130 2.4E-20 T 12-10-2018 IPR025877 MobA-like NTP transferase Alide_0716 7620701fc8227c32ad0814f27e992706 474 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 5 471 2.7E-172 T 12-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 Pfam PF00330 Aconitase family (aconitate hydratase) 336 656 2.3E-85 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 Gene3D G3DSA:3.30.499.10 513 669 1.3E-37 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 Gene3D G3DSA:3.30.499.20 212 510 1.9E-73 T 12-10-2018 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 SUPERFAMILY SSF52016 44 150 1.12E-24 T 12-10-2018 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 Gene3D G3DSA:3.20.19.10 41 194 5.9E-27 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 SUPERFAMILY SSF53732 209 665 8.24E-103 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 PRINTS PR00415 Aconitase family signature 598 611 5.4E-20 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 PRINTS PR00415 Aconitase family signature 537 548 5.4E-20 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 PRINTS PR00415 Aconitase family signature 349 362 5.4E-20 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 PRINTS PR00415 Aconitase family signature 427 440 5.4E-20 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 PRINTS PR00415 Aconitase family signature 363 378 5.4E-20 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 PRINTS PR00415 Aconitase family signature 441 454 5.4E-20 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_0389 dbf29d64556d564d4d43eb6b7bc7c65d 669 Pfam PF00694 Aconitase C-terminal domain 99 147 2.3E-16 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Alide_3641 c4142e384485d233f3cfaf246b5c3c13 324 Pfam PF03466 LysR substrate binding domain 110 272 1.3E-23 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3641 c4142e384485d233f3cfaf246b5c3c13 324 SUPERFAMILY SSF46785 21 131 6.78E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3641 c4142e384485d233f3cfaf246b5c3c13 324 Gene3D G3DSA:1.10.10.10 20 108 1.7E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3641 c4142e384485d233f3cfaf246b5c3c13 324 Gene3D G3DSA:3.40.190.290 112 315 8.4E-28 T 12-10-2018 Alide_3641 c4142e384485d233f3cfaf246b5c3c13 324 SUPERFAMILY SSF53850 112 306 4.5E-24 T 12-10-2018 Alide_3641 c4142e384485d233f3cfaf246b5c3c13 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 82 2.0E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3641 c4142e384485d233f3cfaf246b5c3c13 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 59 70 7.7E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3641 c4142e384485d233f3cfaf246b5c3c13 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 7.7E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3641 c4142e384485d233f3cfaf246b5c3c13 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 59 7.7E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0248 844ab5cc9105dccba4202e3adedaaa8f 684 Gene3D G3DSA:1.10.10.2830 114 215 1.6E-12 T 12-10-2018 Alide_0248 844ab5cc9105dccba4202e3adedaaa8f 684 Gene3D G3DSA:3.90.1530.30 47 112 3.3E-9 T 12-10-2018 Alide_0248 844ab5cc9105dccba4202e3adedaaa8f 684 SMART SM00470 30 127 8.5E-16 T 12-10-2018 IPR003115 ParB/Sulfiredoxin Alide_0248 844ab5cc9105dccba4202e3adedaaa8f 684 Pfam PF02195 ParB-like nuclease domain 32 126 1.5E-11 T 12-10-2018 IPR003115 ParB/Sulfiredoxin Alide_0248 844ab5cc9105dccba4202e3adedaaa8f 684 SUPERFAMILY SSF109709 121 224 7.06E-19 T 12-10-2018 Alide_0248 844ab5cc9105dccba4202e3adedaaa8f 684 SUPERFAMILY SSF110849 32 129 7.06E-13 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Alide_2153 7ff8ad681efaadfeb28434868f1e521b 155 Gene3D G3DSA:3.40.1280.10 1 155 1.9E-47 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Alide_2153 7ff8ad681efaadfeb28434868f1e521b 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 154 27.438 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Alide_2153 7ff8ad681efaadfeb28434868f1e521b 155 PIRSF PIRSF004505 1 154 4.9E-43 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Alide_2153 7ff8ad681efaadfeb28434868f1e521b 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 153 2.5E-47 T 12-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Alide_2153 7ff8ad681efaadfeb28434868f1e521b 155 SUPERFAMILY SSF75217 1 152 2.25E-46 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases Alide_1472 d41d3bb9326c81333820b718936307c5 765 Gene3D G3DSA:3.10.20.310 28 99 2.7E-20 T 12-10-2018 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Gene3D G3DSA:3.10.20.310 276 351 3.7E-14 T 12-10-2018 Alide_1472 d41d3bb9326c81333820b718936307c5 765 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 32 765 4.3E-259 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Gene3D G3DSA:2.40.160.50 433 765 2.1E-99 T 12-10-2018 Alide_1472 d41d3bb9326c81333820b718936307c5 765 PIRSF PIRSF006076 2 765 3.7E-242 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Pfam PF07244 Surface antigen variable number repeat 274 348 1.7E-9 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Pfam PF07244 Surface antigen variable number repeat 184 271 1.4E-15 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Pfam PF07244 Surface antigen variable number repeat 100 180 6.8E-12 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Pfam PF07244 Surface antigen variable number repeat 356 429 3.5E-13 T 12-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Gene3D G3DSA:3.10.20.310 183 274 7.5E-24 T 12-10-2018 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Gene3D G3DSA:3.10.20.310 100 180 1.0E-16 T 12-10-2018 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 10 765 24.284 T 12-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Gene3D G3DSA:3.10.20.310 356 432 4.5E-25 T 12-10-2018 Alide_1472 d41d3bb9326c81333820b718936307c5 765 Pfam PF01103 Surface antigen 456 765 1.0E-75 T 12-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Alide_1783 452adba190644219af1731c38bc02035 267 SUPERFAMILY SSF110399 7 245 1.09E-80 T 12-10-2018 Alide_1783 452adba190644219af1731c38bc02035 267 Gene3D G3DSA:3.20.20.70 7 267 1.4E-102 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1783 452adba190644219af1731c38bc02035 267 Pfam PF05690 Thiazole biosynthesis protein ThiG 11 254 2.6E-105 T 12-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 Alide_1783 452adba190644219af1731c38bc02035 267 Hamap MF_00443 Thiazole synthase [thiG]. 8 260 39.991 T 12-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 Alide_1669 3d0c98e2b96a8c6a048d7cb7c00b22b6 461 SUPERFAMILY SSF52540 178 426 1.89E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1669 3d0c98e2b96a8c6a048d7cb7c00b22b6 461 Pfam PF03796 DnaB-like helicase C terminal domain 178 432 3.4E-72 T 12-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Alide_1669 3d0c98e2b96a8c6a048d7cb7c00b22b6 461 Pfam PF00772 DnaB-like helicase N terminal domain 11 104 2.3E-22 T 12-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Alide_1669 3d0c98e2b96a8c6a048d7cb7c00b22b6 461 Gene3D G3DSA:3.40.50.300 168 436 1.1E-77 T 12-10-2018 Alide_1669 3d0c98e2b96a8c6a048d7cb7c00b22b6 461 Gene3D G3DSA:1.10.860.10 5 156 1.9E-30 T 12-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Alide_1669 3d0c98e2b96a8c6a048d7cb7c00b22b6 461 SUPERFAMILY SSF48024 10 112 2.62E-23 T 12-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 Pfam PF00183 Hsp90 protein 220 652 5.2E-129 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 Gene3D G3DSA:3.30.565.10 1 231 1.5E-74 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 SUPERFAMILY SSF55874 5 219 1.57E-61 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 Gene3D G3DSA:1.20.120.790 523 653 3.5E-43 T 12-10-2018 IPR037196 HSP90, C-terminal domain Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 Gene3D G3DSA:3.40.50.11260 431 518 3.1E-32 T 12-10-2018 Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 24 33 - T 12-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 SMART SM00387 26 187 0.0034 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 SUPERFAMILY SSF54211 242 517 1.52E-95 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 PRINTS PR00775 90kDa heat shock protein signature 74 91 2.2E-61 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 PRINTS PR00775 90kDa heat shock protein signature 123 145 2.2E-61 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 PRINTS PR00775 90kDa heat shock protein signature 25 47 2.2E-61 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 PRINTS PR00775 90kDa heat shock protein signature 193 211 2.2E-61 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 PRINTS PR00775 90kDa heat shock protein signature 175 192 2.2E-61 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 PRINTS PR00775 90kDa heat shock protein signature 92 109 2.2E-61 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 PRINTS PR00775 90kDa heat shock protein signature 4 24 2.2E-61 T 12-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 PIRSF PIRSF002583 1 653 2.4E-211 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 Gene3D G3DSA:3.30.230.80 241 430 6.2E-66 T 12-10-2018 Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 Hamap MF_00505 Chaperone protein HtpG [htpG]. 1 653 32.351 T 12-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 185 2.7E-12 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0551 f27b2436f8314e5c7185dcc03c396026 653 SUPERFAMILY SSF110942 544 652 6.28E-34 T 12-10-2018 IPR037196 HSP90, C-terminal domain Alide_2115 8233d6d7d9f3fb1dadec61a68cdf284c 175 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 16 170 7.8E-44 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Alide_2115 8233d6d7d9f3fb1dadec61a68cdf284c 175 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 5.1E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Alide_2115 8233d6d7d9f3fb1dadec61a68cdf284c 175 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 53 65 5.1E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Alide_2115 8233d6d7d9f3fb1dadec61a68cdf284c 175 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 145 5.1E-12 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Alide_2115 8233d6d7d9f3fb1dadec61a68cdf284c 175 Gene3D G3DSA:2.40.100.10 11 175 3.7E-64 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_2115 8233d6d7d9f3fb1dadec61a68cdf284c 175 SUPERFAMILY SSF50891 2 172 1.61E-53 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_2115 8233d6d7d9f3fb1dadec61a68cdf284c 175 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 48 65 - T 12-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Alide_2115 8233d6d7d9f3fb1dadec61a68cdf284c 175 PIRSF PIRSF001467 1 174 3.3E-26 T 12-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 5.1E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 5.1E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 5.1E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 PRINTS PR00412 Epoxide hydrolase signature 62 77 1.3E-6 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 PRINTS PR00412 Epoxide hydrolase signature 262 284 1.3E-6 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 PRINTS PR00412 Epoxide hydrolase signature 42 60 1.3E-6 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 PRINTS PR00412 Epoxide hydrolase signature 229 245 1.3E-6 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 SUPERFAMILY SSF53474 18 287 1.68E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 Gene3D G3DSA:3.40.50.1820 19 286 9.1E-53 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2940 b441ea9b5d12b65f7500236cf55ed155 289 Pfam PF12697 Alpha/beta hydrolase family 38 277 3.3E-16 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_3014 de496ebf9afba9d86dd9a7c6307919d5 258 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 257 1.5E-76 T 12-10-2018 Alide_3014 de496ebf9afba9d86dd9a7c6307919d5 258 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 257 6.9E-74 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Alide_3014 de496ebf9afba9d86dd9a7c6307919d5 258 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 214 225 - T 12-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 Alide_3014 de496ebf9afba9d86dd9a7c6307919d5 258 SUPERFAMILY SSF56219 1 257 3.8E-81 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Alide_3014 de496ebf9afba9d86dd9a7c6307919d5 258 Gene3D G3DSA:3.60.10.10 1 257 8.8E-76 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Alide_3014 de496ebf9afba9d86dd9a7c6307919d5 258 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 250 2.5E-23 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Alide_4185 ee44786d893042771e36cb09d673a0e3 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 3.7E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4185 ee44786d893042771e36cb09d673a0e3 296 Gene3D G3DSA:1.10.10.10 2 86 4.9E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4185 ee44786d893042771e36cb09d673a0e3 296 Gene3D G3DSA:3.40.190.10 163 265 5.6E-59 T 12-10-2018 Alide_4185 ee44786d893042771e36cb09d673a0e3 296 Pfam PF03466 LysR substrate binding domain 88 294 5.7E-40 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4185 ee44786d893042771e36cb09d673a0e3 296 Gene3D G3DSA:3.40.190.10 91 291 5.6E-59 T 12-10-2018 Alide_4185 ee44786d893042771e36cb09d673a0e3 296 SUPERFAMILY SSF46785 3 112 5.03E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4185 ee44786d893042771e36cb09d673a0e3 296 SUPERFAMILY SSF53850 89 295 1.12E-40 T 12-10-2018 Alide_3719 d93a81239c188a589ca68f98915f0da2 163 SUPERFAMILY SSF57716 123 161 1.33E-7 T 12-10-2018 Alide_3719 d93a81239c188a589ca68f98915f0da2 163 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 40 162 27.646 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Alide_3719 d93a81239c188a589ca68f98915f0da2 163 SUPERFAMILY SSF109635 27 122 2.09E-31 T 12-10-2018 IPR037187 DksA, N-terminal domain superfamily Alide_3719 d93a81239c188a589ca68f98915f0da2 163 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 121 155 2.0E-10 T 12-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Alide_3719 d93a81239c188a589ca68f98915f0da2 163 Gene3D G3DSA:1.20.120.910 28 161 9.6E-37 T 12-10-2018 Alide_3719 d93a81239c188a589ca68f98915f0da2 163 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 44 152 3.0E-44 T 12-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 Alide_3719 d93a81239c188a589ca68f98915f0da2 163 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 126 150 - T 12-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 243 354 2.6E-17 T 12-10-2018 IPR000014 PAS domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 362 477 8.6E-17 T 12-10-2018 IPR000014 PAS domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SUPERFAMILY SSF55785 258 355 6.81E-16 T 12-10-2018 IPR035965 PAS domain superfamily Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SMART SM00267 472 644 2.9E-68 T 12-10-2018 IPR000160 GGDEF domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Pfam PF00672 HAMP domain 180 227 7.0E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Pfam PF00989 PAS fold 247 347 4.0E-7 T 12-10-2018 IPR013767 PAS fold GO:0006355 Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SMART SM00091 246 313 1.2E-7 T 12-10-2018 IPR000014 PAS domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SMART SM00091 358 424 1.5E-5 T 12-10-2018 IPR000014 PAS domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 481 641 1.1E-45 T 12-10-2018 IPR000160 GGDEF domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Pfam PF00990 Diguanylate cyclase, GGDEF domain 483 640 2.8E-53 T 12-10-2018 IPR000160 GGDEF domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Gene3D G3DSA:3.30.450.20 362 482 2.4E-28 T 12-10-2018 Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SUPERFAMILY SSF141868 660 909 9.94E-87 T 12-10-2018 IPR035919 EAL domain superfamily Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SUPERFAMILY SSF55785 347 470 3.84E-23 T 12-10-2018 IPR035965 PAS domain superfamily Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SMART SM00052 654 901 4.7E-108 T 12-10-2018 IPR001633 EAL domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SUPERFAMILY SSF55073 488 644 1.73E-52 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SMART SM00086 310 350 0.27 T 12-10-2018 IPR001610 PAC motif Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SMART SM00086 430 472 0.027 T 12-10-2018 IPR001610 PAC motif Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Gene3D G3DSA:3.30.450.20 244 361 7.0E-16 T 12-10-2018 Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Gene3D G3DSA:3.30.70.270 483 656 2.3E-63 T 12-10-2018 Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SMART SM00304 180 232 2.6E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Pfam PF13426 PAS domain 369 471 1.0E-13 T 12-10-2018 IPR000014 PAS domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 SUPERFAMILY SSF158472 180 229 1.96E-5 T 12-10-2018 Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Pfam PF00563 EAL domain 660 896 8.6E-74 T 12-10-2018 IPR001633 EAL domain Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Gene3D G3DSA:1.20.1480.50 146 237 3.7E-6 T 12-10-2018 Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 18 119 3.9E-13 T 12-10-2018 IPR029095 NarX-like, N-terminal Alide_4053 f27041765c9cb3ec4022e511ef4a945a 921 Gene3D G3DSA:3.20.20.450 657 913 2.3E-98 T 12-10-2018 IPR035919 EAL domain superfamily Alide_3953 7e748d2f2539f0c96c9d4b9f13add69c 416 SMART SM01204 223 397 4.9E-33 T 12-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Alide_3953 7e748d2f2539f0c96c9d4b9f13add69c 416 SMART SM00897 37 222 5.0E-41 T 12-10-2018 IPR013702 FIST domain, N-terminal Alide_3953 7e748d2f2539f0c96c9d4b9f13add69c 416 Pfam PF08495 FIST N domain 40 221 9.8E-28 T 12-10-2018 IPR013702 FIST domain, N-terminal Alide_3953 7e748d2f2539f0c96c9d4b9f13add69c 416 Pfam PF10442 FIST C domain 223 395 3.0E-31 T 12-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 Gene3D G3DSA:1.20.1640.10 11 501 1.3E-281 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 Pfam PF00873 AcrB/AcrD/AcrF family 5 1012 8.2E-274 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 SUPERFAMILY SSF82693 136 323 5.36E-17 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 SUPERFAMILY SSF82866 290 494 1.06E-39 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 Gene3D G3DSA:3.30.70.1430 41 804 1.3E-281 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 SUPERFAMILY SSF82693 553 650 1.31E-9 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 SUPERFAMILY SSF82693 42 124 3.4E-17 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 Gene3D G3DSA:1.20.1640.10 502 1011 1.3E-281 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 2 1018 0.0 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 SUPERFAMILY SSF82866 793 1018 4.19E-52 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 Gene3D G3DSA:3.30.70.1440 655 854 1.3E-281 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 Gene3D G3DSA:3.30.2090.10 176 266 1.3E-281 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 SUPERFAMILY SSF82714 180 262 6.15E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 Gene3D G3DSA:3.30.70.1430 554 654 1.3E-281 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 Gene3D G3DSA:3.30.70.1320 133 325 1.3E-281 T 12-10-2018 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.1E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.1E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 1.1E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.1E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 PRINTS PR00702 Acriflavin resistance protein family signature 539 556 1.1E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.1E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 1.1E-33 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 SUPERFAMILY SSF82714 710 795 6.8E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0039 bae95e69fe9dae2b1c468dbe59928dac 1031 Gene3D G3DSA:3.30.2090.10 709 796 1.3E-281 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_1299 9cb2fd058068cc158225844ea55d52a9 331 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 3.0E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1299 9cb2fd058068cc158225844ea55d52a9 331 SUPERFAMILY SSF53850 89 302 5.02E-35 T 12-10-2018 Alide_1299 9cb2fd058068cc158225844ea55d52a9 331 Pfam PF03466 LysR substrate binding domain 90 300 9.5E-33 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1299 9cb2fd058068cc158225844ea55d52a9 331 SUPERFAMILY SSF46785 1 112 1.11E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1299 9cb2fd058068cc158225844ea55d52a9 331 Gene3D G3DSA:1.10.10.10 2 90 4.5E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1299 9cb2fd058068cc158225844ea55d52a9 331 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.0E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1299 9cb2fd058068cc158225844ea55d52a9 331 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.0E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1299 9cb2fd058068cc158225844ea55d52a9 331 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.0E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1299 9cb2fd058068cc158225844ea55d52a9 331 Gene3D G3DSA:3.40.190.290 93 309 1.2E-37 T 12-10-2018 Alide_4612 584bc6bf16c79e044dd8071375cc3910 193 Gene3D G3DSA:1.10.3480.10 2 190 2.1E-24 T 12-10-2018 Alide_4612 584bc6bf16c79e044dd8071375cc3910 193 TIGRFAM TIGR03482 DMSO_red_II_cha: DMSO reductase family type II enzyme chaperone 10 186 1.2E-63 T 12-10-2018 IPR017843 DMSO reductase family, type II, chaperone Alide_4612 584bc6bf16c79e044dd8071375cc3910 193 Pfam PF02613 Nitrate reductase delta subunit 29 154 8.1E-20 T 12-10-2018 IPR020945 DMSO/Nitrate reductase chaperone Alide_4612 584bc6bf16c79e044dd8071375cc3910 193 SUPERFAMILY SSF89155 6 188 1.44E-30 T 12-10-2018 IPR036411 TorD-like superfamily Alide_3166 3b65aee39460f73c8240ab17afa59799 236 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3166 3b65aee39460f73c8240ab17afa59799 236 Pfam PF00005 ABC transporter 20 164 1.9E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3166 3b65aee39460f73c8240ab17afa59799 236 SUPERFAMILY SSF52540 4 234 2.61E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3166 3b65aee39460f73c8240ab17afa59799 236 SMART SM00382 29 215 2.8E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3166 3b65aee39460f73c8240ab17afa59799 236 PIRSF PIRSF039137 1 236 3.5E-104 T 12-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Alide_3166 3b65aee39460f73c8240ab17afa59799 236 Gene3D G3DSA:3.40.50.300 1 236 1.8E-62 T 12-10-2018 Alide_2155 fa06fbc932d9eded452b967dad67bde1 239 SUPERFAMILY SSF51206 11 145 1.57E-29 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_2155 fa06fbc932d9eded452b967dad67bde1 239 Pfam PF00027 Cyclic nucleotide-binding domain 36 120 3.4E-15 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_2155 fa06fbc932d9eded452b967dad67bde1 239 Gene3D G3DSA:1.10.10.10 150 236 6.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2155 fa06fbc932d9eded452b967dad67bde1 239 SMART SM00419 181 229 1.2E-10 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_2155 fa06fbc932d9eded452b967dad67bde1 239 Pfam PF13545 Crp-like helix-turn-helix domain 155 235 4.1E-14 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_2155 fa06fbc932d9eded452b967dad67bde1 239 SMART SM00100 17 135 2.7E-14 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_2155 fa06fbc932d9eded452b967dad67bde1 239 SUPERFAMILY SSF46785 150 233 1.91E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2155 fa06fbc932d9eded452b967dad67bde1 239 Gene3D G3DSA:2.60.120.10 1 149 2.1E-40 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_3383 caa23a2978001d49bf1c17866403666e 990 PIRSF PIRSF036643 666 710 200.0 T 12-10-2018 Alide_3383 caa23a2978001d49bf1c17866403666e 990 PIRSF PIRSF036643 819 950 2.3E-15 T 12-10-2018 Alide_3383 caa23a2978001d49bf1c17866403666e 990 PIRSF PIRSF036643 51 611 1.8E-112 T 12-10-2018 Alide_3383 caa23a2978001d49bf1c17866403666e 990 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 80 129 3.2E-11 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3383 caa23a2978001d49bf1c17866403666e 990 Gene3D G3DSA:2.20.25.90 79 131 2.4E-11 T 12-10-2018 Alide_3383 caa23a2978001d49bf1c17866403666e 990 Pfam PF01568 Molydopterin dinucleotide binding domain 856 983 3.0E-19 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Alide_3383 caa23a2978001d49bf1c17866403666e 990 Gene3D G3DSA:2.40.40.20 802 990 1.7E-40 T 12-10-2018 Alide_3383 caa23a2978001d49bf1c17866403666e 990 SUPERFAMILY SSF53706 75 632 2.49E-201 T 12-10-2018 Alide_3383 caa23a2978001d49bf1c17866403666e 990 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 83 100 - T 12-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 Alide_3383 caa23a2978001d49bf1c17866403666e 990 SMART SM00926 78 132 3.6E-14 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3383 caa23a2978001d49bf1c17866403666e 990 Gene3D G3DSA:3.40.228.10 212 411 3.6E-130 T 12-10-2018 Alide_3383 caa23a2978001d49bf1c17866403666e 990 SUPERFAMILY SSF50692 822 990 2.22E-38 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Alide_3383 caa23a2978001d49bf1c17866403666e 990 Gene3D G3DSA:3.40.50.740 144 641 3.6E-130 T 12-10-2018 Alide_3383 caa23a2978001d49bf1c17866403666e 990 Pfam PF00384 Molybdopterin oxidoreductase 135 589 1.4E-55 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 SUPERFAMILY SSF54810 411 538 1.44E-46 T 12-10-2018 Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 Gene3D G3DSA:3.40.50.880 5 204 8.7E-49 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 Gene3D G3DSA:3.30.300.10 412 538 4.2E-50 T 12-10-2018 Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 Pfam PF00117 Glutamine amidotransferase class-I 8 198 8.0E-32 T 12-10-2018 IPR017926 Glutamine amidotransferase Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 Pfam PF02540 NAD synthase 222 253 1.8E-6 T 12-10-2018 IPR022310 NAD/GMP synthase Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 3 538 53.782 T 12-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 538 3.0E-140 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 Pfam PF00958 GMP synthase C terminal domain 452 537 5.4E-42 T 12-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 6 203 1.5E-67 T 12-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 SUPERFAMILY SSF52402 196 426 3.53E-57 T 12-10-2018 Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 Gene3D G3DSA:3.40.50.620 209 411 9.5E-74 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1954 9898a2ede6b843f556aeb5f399f84783 538 SUPERFAMILY SSF52317 3 236 2.93E-52 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_1626 2c10598dcfacc57d1a445dfdc5de17f1 226 SUPERFAMILY SSF48403 33 212 5.39E-38 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Alide_1626 2c10598dcfacc57d1a445dfdc5de17f1 226 Pfam PF12796 Ankyrin repeats (3 copies) 114 190 3.7E-14 T 12-10-2018 IPR020683 Ankyrin repeat-containing domain Alide_1626 2c10598dcfacc57d1a445dfdc5de17f1 226 SMART SM00248 93 122 0.021 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 Alide_1626 2c10598dcfacc57d1a445dfdc5de17f1 226 SMART SM00248 159 188 0.0035 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 Alide_1626 2c10598dcfacc57d1a445dfdc5de17f1 226 SMART SM00248 123 155 0.12 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 Alide_1626 2c10598dcfacc57d1a445dfdc5de17f1 226 SMART SM00248 59 89 2000.0 T 12-10-2018 IPR002110 Ankyrin repeat GO:0005515 Alide_1626 2c10598dcfacc57d1a445dfdc5de17f1 226 Gene3D G3DSA:1.25.40.20 31 119 2.6E-15 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Alide_1626 2c10598dcfacc57d1a445dfdc5de17f1 226 Gene3D G3DSA:1.25.40.20 120 220 2.2E-24 T 12-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily Alide_2634 48075f205f392259dec006ae9a566b92 1326 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 614 690 4.2E-13 T 12-10-2018 IPR011709 Domain of unknown function DUF1605 Alide_2634 48075f205f392259dec006ae9a566b92 1326 Pfam PF11898 Domain of unknown function (DUF3418) 704 1321 1.0E-214 T 12-10-2018 IPR024590 RNA helicase HrpA, C-terminal Alide_2634 48075f205f392259dec006ae9a566b92 1326 Gene3D G3DSA:3.40.50.300 198 369 6.7E-57 T 12-10-2018 Alide_2634 48075f205f392259dec006ae9a566b92 1326 Gene3D G3DSA:1.20.120.1080 397 499 3.9E-17 T 12-10-2018 Alide_2634 48075f205f392259dec006ae9a566b92 1326 Pfam PF00271 Helicase conserved C-terminal domain 232 351 5.6E-11 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_2634 48075f205f392259dec006ae9a566b92 1326 Pfam PF00270 DEAD/DEAH box helicase 25 174 2.1E-7 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_2634 48075f205f392259dec006ae9a566b92 1326 Pfam PF04408 Helicase associated domain (HA2) 415 492 1.2E-14 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 Alide_2634 48075f205f392259dec006ae9a566b92 1326 Gene3D G3DSA:3.40.50.300 4 197 3.8E-71 T 12-10-2018 Alide_2634 48075f205f392259dec006ae9a566b92 1326 SMART SM00487 8 204 3.9E-24 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_2634 48075f205f392259dec006ae9a566b92 1326 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 3 525 1.8E-251 T 12-10-2018 IPR010222 RNA helicase HrpA GO:0004004 Alide_2634 48075f205f392259dec006ae9a566b92 1326 SUPERFAMILY SSF52540 7 516 4.08E-102 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2634 48075f205f392259dec006ae9a566b92 1326 SMART SM00490 251 352 7.9E-16 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_2634 48075f205f392259dec006ae9a566b92 1326 SMART SM00847 412 502 4.9E-29 T 12-10-2018 IPR007502 Helicase-associated domain GO:0004386 Alide_2634 48075f205f392259dec006ae9a566b92 1326 SMART SM00382 25 318 6.3E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2213 d610a51ec39707d6755f0485a703883e 112 Gene3D G3DSA:3.10.20.30 1 112 5.5E-34 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_2213 d610a51ec39707d6755f0485a703883e 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 1.2E-53 T 12-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 Alide_2213 d610a51ec39707d6755f0485a703883e 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 12-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Alide_2213 d610a51ec39707d6755f0485a703883e 112 SUPERFAMILY SSF54292 6 108 3.46E-30 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_2213 d610a51ec39707d6755f0485a703883e 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 91 2.2E-12 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Alide_2213 d610a51ec39707d6755f0485a703883e 112 PRINTS PR00355 Adrenodoxin signature 60 74 1.6E-9 T 12-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Alide_2213 d610a51ec39707d6755f0485a703883e 112 PRINTS PR00355 Adrenodoxin signature 42 52 1.6E-9 T 12-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Alide_2213 d610a51ec39707d6755f0485a703883e 112 PRINTS PR00355 Adrenodoxin signature 83 91 1.6E-9 T 12-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 12-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 Gene3D G3DSA:3.90.930.12 1 82 9.6E-27 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 Pfam PF00347 Ribosomal protein L6 11 82 4.3E-15 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 Pfam PF00347 Ribosomal protein L6 90 164 4.2E-18 T 12-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 SUPERFAMILY SSF56053 1 82 8.51E-24 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 35.873 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.8E-72 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 Gene3D G3DSA:3.90.930.12 83 177 9.7E-39 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.1E-33 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.1E-33 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.1E-33 T 12-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 PIRSF PIRSF002162 1 177 2.8E-47 T 12-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3968 e322503bf64f14d207ae989a0bdf836c 177 SUPERFAMILY SSF56053 83 177 6.15E-34 T 12-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_1804 441f2a7f5fbc31bbaab620b2353ad1cc 521 Pfam PF00501 AMP-binding enzyme 9 418 1.2E-84 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_1804 441f2a7f5fbc31bbaab620b2353ad1cc 521 Pfam PF13193 AMP-binding enzyme C-terminal domain 427 502 4.3E-20 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1804 441f2a7f5fbc31bbaab620b2353ad1cc 521 SUPERFAMILY SSF56801 2 517 1.44E-139 T 12-10-2018 Alide_1804 441f2a7f5fbc31bbaab620b2353ad1cc 521 Gene3D G3DSA:3.40.50.12780 1 414 9.3E-97 T 12-10-2018 Alide_1804 441f2a7f5fbc31bbaab620b2353ad1cc 521 ProSitePatterns PS00455 Putative AMP-binding domain signature. 165 176 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_1804 441f2a7f5fbc31bbaab620b2353ad1cc 521 Gene3D G3DSA:3.30.300.310 415 517 2.0E-31 T 12-10-2018 Alide_4197 767d41003675322b3d658da7f6e454f7 133 Gene3D G3DSA:3.10.180.10 1 128 2.9E-34 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_4197 767d41003675322b3d658da7f6e454f7 133 SUPERFAMILY SSF54593 2 128 3.52E-22 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_4197 767d41003675322b3d658da7f6e454f7 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 121 1.8E-4 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 PIRSF PIRSF001438 1 309 2.6E-112 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 227 301 1.2E-10 T 12-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 Gene3D G3DSA:3.40.190.10 10 211 1.7E-83 T 12-10-2018 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 PRINTS PR00151 Porphobilinogen deaminase signature 145 162 1.9E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 PRINTS PR00151 Porphobilinogen deaminase signature 47 67 1.9E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 PRINTS PR00151 Porphobilinogen deaminase signature 126 143 1.9E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 PRINTS PR00151 Porphobilinogen deaminase signature 78 97 1.9E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 PRINTS PR00151 Porphobilinogen deaminase signature 232 249 1.9E-45 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 SUPERFAMILY SSF53850 9 220 1.02E-80 T 12-10-2018 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 Gene3D G3DSA:3.30.160.40 223 308 1.4E-15 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 Gene3D G3DSA:3.40.190.10 105 204 1.7E-83 T 12-10-2018 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 10 301 6.4E-104 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 SUPERFAMILY SSF54782 223 305 2.22E-16 T 12-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 10 214 4.4E-80 T 12-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2811 e4026a352d9fb13b5ced49756f0ebb00 309 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 9 303 36.333 T 12-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_0174 382f893777fad09c6d71779541f989c4 327 SUPERFAMILY SSF53850 95 285 2.61E-11 T 12-10-2018 Alide_0174 382f893777fad09c6d71779541f989c4 327 Gene3D G3DSA:3.40.190.150 30 317 1.2E-107 T 12-10-2018 Alide_0174 382f893777fad09c6d71779541f989c4 327 PIRSF PIRSF017082 2 327 1.7E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0174 382f893777fad09c6d71779541f989c4 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 321 8.8E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0174 382f893777fad09c6d71779541f989c4 327 Gene3D G3DSA:3.40.190.10 128 251 1.2E-107 T 12-10-2018 Alide_0698 db867c05c0f1838d9df28460e6a51efd 344 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 13 313 2.5E-98 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Alide_0698 db867c05c0f1838d9df28460e6a51efd 344 PIRSF PIRSF001439 22 323 1.2E-59 T 12-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Alide_0698 db867c05c0f1838d9df28460e6a51efd 344 Gene3D G3DSA:3.40.50.720 126 295 3.8E-126 T 12-10-2018 Alide_0698 db867c05c0f1838d9df28460e6a51efd 344 Gene3D G3DSA:3.30.1780.10 17 333 3.8E-126 T 12-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Alide_0698 db867c05c0f1838d9df28460e6a51efd 344 SUPERFAMILY SSF51735 2 335 1.97E-97 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2382 04639fe1fca53b3d1ce75be843b86c70 251 SMART SM00382 43 233 6.7E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2382 04639fe1fca53b3d1ce75be843b86c70 251 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2382 04639fe1fca53b3d1ce75be843b86c70 251 Pfam PF00005 ABC transporter 34 182 2.9E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2382 04639fe1fca53b3d1ce75be843b86c70 251 SUPERFAMILY SSF52540 14 236 1.69E-71 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2382 04639fe1fca53b3d1ce75be843b86c70 251 Gene3D G3DSA:3.40.50.300 12 249 1.1E-63 T 12-10-2018 Alide_1378 9dbdc36953a8b60ab4b481255d8ab3a5 299 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 10 64 1.5E-8 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Alide_1378 9dbdc36953a8b60ab4b481255d8ab3a5 299 Gene3D G3DSA:1.10.3720.10 86 299 3.6E-29 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1378 9dbdc36953a8b60ab4b481255d8ab3a5 299 SUPERFAMILY SSF161098 89 280 2.09E-30 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1378 9dbdc36953a8b60ab4b481255d8ab3a5 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 298 5.8E-34 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0594 0dc68b1dfadee9b9b88d443c2a32196f 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 3.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0594 0dc68b1dfadee9b9b88d443c2a32196f 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 3.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0594 0dc68b1dfadee9b9b88d443c2a32196f 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 3.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0594 0dc68b1dfadee9b9b88d443c2a32196f 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 3.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0594 0dc68b1dfadee9b9b88d443c2a32196f 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 3.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0594 0dc68b1dfadee9b9b88d443c2a32196f 268 SUPERFAMILY SSF51735 8 251 2.76E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0594 0dc68b1dfadee9b9b88d443c2a32196f 268 Gene3D G3DSA:3.40.50.720 6 261 2.2E-41 T 12-10-2018 Alide_0594 0dc68b1dfadee9b9b88d443c2a32196f 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 1.7E-21 T 12-10-2018 Alide_1776 c7ebe6d69b269f344f178239e77ba929 413 Gene3D G3DSA:1.10.540.10 1 140 3.3E-50 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_1776 c7ebe6d69b269f344f178239e77ba929 413 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 137 5.1E-15 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_1776 c7ebe6d69b269f344f178239e77ba929 413 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 142 243 3.1E-21 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_1776 c7ebe6d69b269f344f178239e77ba929 413 SUPERFAMILY SSF56645 1 268 5.37E-68 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_1776 c7ebe6d69b269f344f178239e77ba929 413 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 255 404 1.3E-37 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_1776 c7ebe6d69b269f344f178239e77ba929 413 Gene3D G3DSA:2.40.110.10 141 255 7.2E-52 T 12-10-2018 Alide_1776 c7ebe6d69b269f344f178239e77ba929 413 Gene3D G3DSA:1.20.140.10 256 411 1.6E-39 T 12-10-2018 Alide_1776 c7ebe6d69b269f344f178239e77ba929 413 SUPERFAMILY SSF47203 253 409 1.77E-46 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 Pfam PF00970 Oxidoreductase FAD-binding domain 7 98 2.8E-4 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 PRINTS PR00410 Phenol hydroxylase reductase family signature 93 102 4.1E-11 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 PRINTS PR00410 Phenol hydroxylase reductase family signature 203 211 4.1E-11 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 PRINTS PR00410 Phenol hydroxylase reductase family signature 109 128 4.1E-11 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 4.1E-11 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 Gene3D G3DSA:2.40.30.10 1 93 8.1E-15 T 12-10-2018 Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 SUPERFAMILY SSF63380 4 99 1.77E-13 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 Gene3D G3DSA:3.40.50.80 98 238 3.0E-32 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 SUPERFAMILY SSF52343 105 236 2.88E-31 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_0776 c1b0a3daefbf248952aaee9cace2abeb 239 Pfam PF00175 Oxidoreductase NAD-binding domain 110 217 5.9E-21 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 SUPERFAMILY SSF55957 364 454 1.06E-19 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 254 357 9.5E-20 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 Gene3D G3DSA:3.40.120.10 246 363 1.6E-38 T 12-10-2018 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 368 448 7.4E-12 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 Gene3D G3DSA:3.40.120.10 168 245 4.8E-32 T 12-10-2018 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 SUPERFAMILY SSF53738 254 350 6.67E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 9.8E-24 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 200 213 9.8E-24 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 166 185 9.8E-24 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 229 244 9.8E-24 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 Gene3D G3DSA:3.30.310.50 365 458 3.3E-22 T 12-10-2018 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 152 249 1.3E-25 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 134 2.3E-35 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 SUPERFAMILY SSF53738 150 250 3.77E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 Gene3D G3DSA:3.40.120.10 1 147 1.8E-52 T 12-10-2018 Alide_2592 65567da2d5078cb8b494cfbe0618c162 462 SUPERFAMILY SSF53738 5 129 1.33E-37 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_0569 85e658f212a1b23b6f79e01c27bdaad4 317 Gene3D G3DSA:3.30.70.1350 215 305 5.0E-19 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Alide_0569 85e658f212a1b23b6f79e01c27bdaad4 317 SUPERFAMILY SSF160240 220 302 3.4E-12 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Alide_0569 85e658f212a1b23b6f79e01c27bdaad4 317 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 21 299 1.4E-60 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Alide_0569 85e658f212a1b23b6f79e01c27bdaad4 317 SUPERFAMILY SSF161111 20 217 1.7E-52 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Alide_0569 85e658f212a1b23b6f79e01c27bdaad4 317 Pfam PF01545 Cation efflux family 21 215 1.5E-39 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Alide_0569 85e658f212a1b23b6f79e01c27bdaad4 317 Gene3D G3DSA:1.20.1510.10 19 214 8.5E-55 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Alide_0569 85e658f212a1b23b6f79e01c27bdaad4 317 Pfam PF16916 Dimerisation domain of Zinc Transporter 238 299 1.3E-11 T 12-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain Alide_3788 2a1e607ee753cb93ef9b386d641ba03d 102 Pfam PF04341 Protein of unknown function, DUF485 10 97 1.2E-33 T 12-10-2018 IPR007436 Protein of unknown function DUF485 Alide_2399 38f61c7f4e90bab2166e45d531d039dd 424 Gene3D G3DSA:3.50.50.60 20 415 1.1E-117 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2399 38f61c7f4e90bab2166e45d531d039dd 424 SUPERFAMILY SSF51905 17 421 3.76E-47 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2399 38f61c7f4e90bab2166e45d531d039dd 424 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 18 40 8.3E-6 T 12-10-2018 Alide_2399 38f61c7f4e90bab2166e45d531d039dd 424 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 389 396 8.3E-6 T 12-10-2018 Alide_2399 38f61c7f4e90bab2166e45d531d039dd 424 Gene3D G3DSA:2.40.30.10 213 366 1.1E-117 T 12-10-2018 Alide_2399 38f61c7f4e90bab2166e45d531d039dd 424 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 20 419 1.3E-111 T 12-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like Alide_2399 38f61c7f4e90bab2166e45d531d039dd 424 SUPERFAMILY SSF160996 214 367 3.92E-38 T 12-10-2018 Alide_2399 38f61c7f4e90bab2166e45d531d039dd 424 Pfam PF03486 HI0933-like protein 18 419 3.2E-134 T 12-10-2018 Alide_2399 38f61c7f4e90bab2166e45d531d039dd 424 Gene3D G3DSA:1.10.8.260 290 349 1.1E-117 T 12-10-2018 IPR023166 HI0933-like insert domain superfamily Alide_1335 2b76f5601cc3d9b0bed08b10e6b94716 379 Gene3D G3DSA:3.40.190.10 155 205 1.4E-5 T 12-10-2018 Alide_1335 2b76f5601cc3d9b0bed08b10e6b94716 379 SUPERFAMILY SSF46785 4 129 1.36E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1335 2b76f5601cc3d9b0bed08b10e6b94716 379 Gene3D G3DSA:3.40.190.10 206 288 1.4E-5 T 12-10-2018 Alide_1335 2b76f5601cc3d9b0bed08b10e6b94716 379 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 80 1.1E-13 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1335 2b76f5601cc3d9b0bed08b10e6b94716 379 Gene3D G3DSA:1.10.10.10 2 116 2.7E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1335 2b76f5601cc3d9b0bed08b10e6b94716 379 Pfam PF12727 PBP superfamily domain 147 331 3.3E-48 T 12-10-2018 IPR024370 PBP domain Alide_1335 2b76f5601cc3d9b0bed08b10e6b94716 379 SUPERFAMILY SSF53850 194 348 2.85E-14 T 12-10-2018 Alide_2198 7d4f664292947b103aac70a4a07668a1 184 SUPERFAMILY SSF88659 102 182 5.42E-18 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_2198 7d4f664292947b103aac70a4a07668a1 184 Pfam PF08281 Sigma-70, region 4 126 176 1.2E-19 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_2198 7d4f664292947b103aac70a4a07668a1 184 Gene3D G3DSA:1.10.1740.10 5 117 4.4E-31 T 12-10-2018 Alide_2198 7d4f664292947b103aac70a4a07668a1 184 Gene3D G3DSA:1.10.10.10 120 182 2.9E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2198 7d4f664292947b103aac70a4a07668a1 184 Pfam PF04542 Sigma-70 region 2 27 94 5.1E-19 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Alide_2198 7d4f664292947b103aac70a4a07668a1 184 SUPERFAMILY SSF88946 1 111 2.98E-32 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_2198 7d4f664292947b103aac70a4a07668a1 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 23 181 6.2E-37 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 160 9.2E-14 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 Gene3D G3DSA:1.20.140.10 291 467 2.9E-44 T 12-10-2018 Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 284 452 3.7E-21 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 35 8.1E-12 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 Gene3D G3DSA:1.10.540.10 16 162 8.8E-19 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 Gene3D G3DSA:2.40.110.10 163 290 6.0E-26 T 12-10-2018 Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 SUPERFAMILY SSF56645 37 294 2.09E-58 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 SUPERFAMILY SSF47203 290 469 1.22E-49 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 473 593 3.4E-27 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Alide_0675 c2a8646eccc97d21b54bd1ae353d5016 598 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 165 273 9.2E-15 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_1507 49aeea0676f076477d737f2a268b43a0 105 Gene3D G3DSA:2.60.120.10 1 105 1.9E-39 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1507 49aeea0676f076477d737f2a268b43a0 105 Pfam PF06865 Protein of unknown function (DUF1255) 14 104 2.9E-35 T 12-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 Alide_1507 49aeea0676f076477d737f2a268b43a0 105 SUPERFAMILY SSF51182 14 104 4.16E-33 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_1507 49aeea0676f076477d737f2a268b43a0 105 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 12 105 26.398 T 12-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 Alide_2587 3ca8fe5743517f35dfaa30018e3a7b01 344 Gene3D G3DSA:3.30.1370.60 72 312 1.9E-90 T 12-10-2018 Alide_2587 3ca8fe5743517f35dfaa30018e3a7b01 344 Gene3D G3DSA:3.30.60.50 188 235 1.9E-90 T 12-10-2018 Alide_2587 3ca8fe5743517f35dfaa30018e3a7b01 344 SUPERFAMILY SSF89733 14 343 1.44E-94 T 12-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 Alide_2587 3ca8fe5743517f35dfaa30018e3a7b01 344 Pfam PF02615 Malate/L-lactate dehydrogenase 15 339 8.7E-95 T 12-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 Alide_2587 3ca8fe5743517f35dfaa30018e3a7b01 344 Gene3D G3DSA:1.10.1530.10 22 338 1.9E-90 T 12-10-2018 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 21 196 24.466 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 PRINTS PR00338 Transcription termination factor NUSG signature 172 188 4.2E-19 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 PRINTS PR00338 Transcription termination factor NUSG signature 76 88 4.2E-19 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 PRINTS PR00338 Transcription termination factor NUSG signature 154 169 4.2E-19 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 SMART SM00739 142 169 3.9E-4 T 12-10-2018 IPR005824 KOW Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 Pfam PF00467 KOW motif 145 173 8.5E-6 T 12-10-2018 IPR005824 KOW Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 SUPERFAMILY SSF82679 22 133 2.09E-39 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 Gene3D G3DSA:2.30.30.30 137 195 1.5E-24 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 Pfam PF02357 Transcription termination factor nusG 23 126 1.8E-27 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 SMART SM00738 21 130 5.0E-46 T 12-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 24 195 2.7E-66 T 12-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 SUPERFAMILY SSF50104 140 195 3.01E-18 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 ProSitePatterns PS01014 Transcription termination factor nusG signature. 179 188 - T 12-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site Alide_0457 28ee3a3e2f09b76029373d1cdb2ce846 196 Gene3D G3DSA:3.30.70.940 17 136 7.2E-47 T 12-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Alide_3221 294ec81d73361a2ae872531cf0acd7dc 1978 SMART SM01360 1268 1358 4.7E-27 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Alide_3221 294ec81d73361a2ae872531cf0acd7dc 1978 Pfam PF00207 Alpha-2-macroglobulin family 1270 1356 2.7E-14 T 12-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Alide_3221 294ec81d73361a2ae872531cf0acd7dc 1978 SMART SM01359 1027 1210 8.1E-47 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Alide_3221 294ec81d73361a2ae872531cf0acd7dc 1978 Pfam PF01835 MG2 domain 643 747 2.0E-20 T 12-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 Alide_3221 294ec81d73361a2ae872531cf0acd7dc 1978 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 528 634 1.8E-32 T 12-10-2018 Alide_3221 294ec81d73361a2ae872531cf0acd7dc 1978 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 1027 1210 4.7E-22 T 12-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Alide_3229 b296bac5b6887c96b7d401ab16d89c3f 163 Gene3D G3DSA:1.10.10.10 1 147 2.9E-38 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3229 b296bac5b6887c96b7d401ab16d89c3f 163 SUPERFAMILY SSF46785 2 135 5.09E-37 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3229 b296bac5b6887c96b7d401ab16d89c3f 163 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 133 1.9E-35 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type Alide_3229 b296bac5b6887c96b7d401ab16d89c3f 163 Pfam PF02082 Transcriptional regulator 1 83 1.8E-25 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type Alide_3267 d913549a471842492e619636d57dc26a 415 SUPERFAMILY SSF63882 12 185 9.81E-50 T 12-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_3267 d913549a471842492e619636d57dc26a 415 Gene3D G3DSA:2.40.340.10 340 404 2.1E-128 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_3267 d913549a471842492e619636d57dc26a 415 Pfam PF03454 MoeA C-terminal region (domain IV) 344 410 3.2E-10 T 12-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_3267 d913549a471842492e619636d57dc26a 415 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 186 326 2.1E-29 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_3267 d913549a471842492e619636d57dc26a 415 Pfam PF00994 Probable molybdopterin binding domain 190 328 1.5E-26 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_3267 d913549a471842492e619636d57dc26a 415 SUPERFAMILY SSF53218 186 335 1.57E-43 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily Alide_3267 d913549a471842492e619636d57dc26a 415 SMART SM00852 189 330 8.6E-49 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_3267 d913549a471842492e619636d57dc26a 415 Pfam PF03453 MoeA N-terminal region (domain I and II) 15 176 3.8E-43 T 12-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_3267 d913549a471842492e619636d57dc26a 415 Gene3D G3DSA:2.170.190.11 57 150 2.1E-128 T 12-10-2018 Alide_3267 d913549a471842492e619636d57dc26a 415 Gene3D G3DSA:3.90.105.10 34 183 2.1E-128 T 12-10-2018 Alide_3267 d913549a471842492e619636d57dc26a 415 Gene3D G3DSA:3.40.980.10 184 339 2.1E-128 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily Alide_3267 d913549a471842492e619636d57dc26a 415 SUPERFAMILY SSF63867 340 410 5.36E-15 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_4499 16ddae70aadf05529137c31d42767e08 548 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 120 130 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Alide_4499 16ddae70aadf05529137c31d42767e08 548 SUPERFAMILY SSF55008 2 64 7.85E-16 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_4499 16ddae70aadf05529137c31d42767e08 548 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 87 405 2.0E-63 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_4499 16ddae70aadf05529137c31d42767e08 548 SUPERFAMILY SSF51905 88 444 6.69E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4499 16ddae70aadf05529137c31d42767e08 548 Pfam PF00403 Heavy-metal-associated domain 4 63 4.0E-13 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Alide_4499 16ddae70aadf05529137c31d42767e08 548 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 424 532 2.0E-29 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Alide_4499 16ddae70aadf05529137c31d42767e08 548 TIGRFAM TIGR02053 MerA: mercury(II) reductase 87 548 4.7E-188 T 12-10-2018 IPR021179 Mercury(II) reductase GO:0016152|GO:0016491|GO:0045340|GO:0050660|GO:0050661|GO:0050787|GO:0055114 Alide_4499 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 132 151 6.9E-93 T 12-10-2018 Alide_4499 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 521 540 6.9E-93 T 12-10-2018 Alide_4499 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 259 276 6.9E-93 T 12-10-2018 Alide_4499 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 97 115 6.9E-93 T 12-10-2018 Alide_4499 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 13 23 6.9E-93 T 12-10-2018 Alide_4499 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 224 241 6.9E-93 T 12-10-2018 Alide_4499 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 279 294 6.9E-93 T 12-10-2018 Alide_4499 16ddae70aadf05529137c31d42767e08 548 PRINTS PR00945 Mercuric reductase class II signature 456 476 6.9E-93 T 12-10-2018 Alide_4499 16ddae70aadf05529137c31d42767e08 548 Gene3D G3DSA:3.50.50.60 89 406 1.6E-119 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4499 16ddae70aadf05529137c31d42767e08 548 Gene3D G3DSA:3.30.70.100 1 67 2.8E-17 T 12-10-2018 Alide_4499 16ddae70aadf05529137c31d42767e08 548 Gene3D G3DSA:3.30.390.30 423 548 4.9E-47 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_4499 16ddae70aadf05529137c31d42767e08 548 SUPERFAMILY SSF55424 423 546 3.09E-33 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_4499 16ddae70aadf05529137c31d42767e08 548 PIRSF PIRSF000350 1 548 1.7E-264 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Alide_4499 16ddae70aadf05529137c31d42767e08 548 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Alide_4499 16ddae70aadf05529137c31d42767e08 548 Gene3D G3DSA:3.50.50.60 232 348 1.6E-119 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 SUPERFAMILY SSF69055 296 389 4.97E-26 T 12-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 387 5.4E-145 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 386 44.536 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 PIRSF PIRSF006205 2 391 1.5E-145 T 12-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 133 4.8E-46 T 12-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 SUPERFAMILY SSF51735 3 151 2.51E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 Gene3D G3DSA:3.40.50.720 1 151 8.3E-53 T 12-10-2018 Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 Gene3D G3DSA:1.10.1740.10 307 391 1.0E-23 T 12-10-2018 Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 147 233 1.4E-35 T 12-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 SUPERFAMILY SSF55347 127 268 7.52E-57 T 12-10-2018 Alide_1470 ce17fb0029877bcc673b2b399b7900b7 391 Pfam PF13288 DXP reductoisomerase C-terminal domain 265 381 2.6E-37 T 12-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Alide_2282 e59219985954ec17484a013ed333b867 211 Gene3D G3DSA:1.20.120.530 77 210 3.5E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2282 e59219985954ec17484a013ed333b867 211 Pfam PF07729 FCD domain 83 204 8.1E-26 T 12-10-2018 IPR011711 GntR, C-terminal Alide_2282 e59219985954ec17484a013ed333b867 211 SMART SM00345 15 73 3.7E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2282 e59219985954ec17484a013ed333b867 211 Gene3D G3DSA:1.10.10.10 8 75 2.3E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2282 e59219985954ec17484a013ed333b867 211 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 4.8E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2282 e59219985954ec17484a013ed333b867 211 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 4.8E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2282 e59219985954ec17484a013ed333b867 211 SUPERFAMILY SSF48008 79 208 9.42E-27 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2282 e59219985954ec17484a013ed333b867 211 SUPERFAMILY SSF46785 7 77 2.85E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2282 e59219985954ec17484a013ed333b867 211 SMART SM00895 83 205 3.6E-20 T 12-10-2018 IPR011711 GntR, C-terminal Alide_2282 e59219985954ec17484a013ed333b867 211 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 2.5E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 SUPERFAMILY SSF55008 19 90 2.49E-21 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 TIGRFAM TIGR02052 MerP: mercuric transport protein periplasmic component 1 92 5.5E-44 T 12-10-2018 IPR011795 Mercuric transport protein periplasmic component GO:0015097|GO:0015694|GO:0042597|GO:0045340|GO:0046689 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 Gene3D G3DSA:3.30.70.100 21 92 6.0E-22 T 12-10-2018 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 Pfam PF00403 Heavy-metal-associated domain 26 86 6.5E-16 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 PRINTS PR00946 Mercury scavenger protein signature 32 48 8.3E-38 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 PRINTS PR00946 Mercury scavenger protein signature 48 63 8.3E-38 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 PRINTS PR00946 Mercury scavenger protein signature 63 77 8.3E-38 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 PRINTS PR00946 Mercury scavenger protein signature 3 21 8.3E-38 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 PRINTS PR00946 Mercury scavenger protein signature 77 91 8.3E-38 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 PRINTS PR00946 Mercury scavenger protein signature 21 32 8.3E-38 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_1827 c3f4a9adbc2228c0700191e9842bb579 92 ProSitePatterns PS01047 Heavy-metal-associated domain. 29 58 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Alide_2512 603bb73d382692026ad8407887edae00 174 Gene3D G3DSA:3.30.110.10 65 160 1.6E-36 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Alide_2512 603bb73d382692026ad8407887edae00 174 SUPERFAMILY SSF54364 2 66 1.57E-23 T 12-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Alide_2512 603bb73d382692026ad8407887edae00 174 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 72 156 1.0E-37 T 12-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Alide_2512 603bb73d382692026ad8407887edae00 174 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 2 65 1.8E-24 T 12-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Alide_2512 603bb73d382692026ad8407887edae00 174 Gene3D G3DSA:3.10.20.80 1 64 6.4E-25 T 12-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Alide_2512 603bb73d382692026ad8407887edae00 174 ProSitePatterns PS00938 Initiation factor 3 signature. 47 60 - T 12-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 Alide_2512 603bb73d382692026ad8407887edae00 174 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 2 159 2.0E-62 T 12-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Alide_2512 603bb73d382692026ad8407887edae00 174 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 159 26.938 T 12-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Alide_2512 603bb73d382692026ad8407887edae00 174 SUPERFAMILY SSF55200 71 160 3.27E-33 T 12-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Alide_1748 b9740e669fc70ec5befd03e2a32c9d7b 177 SUPERFAMILY SSF50324 3 175 1.57E-67 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Alide_1748 b9740e669fc70ec5befd03e2a32c9d7b 177 Pfam PF00719 Inorganic pyrophosphatase 18 174 1.2E-52 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Alide_1748 b9740e669fc70ec5befd03e2a32c9d7b 177 Gene3D G3DSA:3.90.80.10 1 175 4.4E-69 T 12-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Alide_1748 b9740e669fc70ec5befd03e2a32c9d7b 177 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Alide_1748 b9740e669fc70ec5befd03e2a32c9d7b 177 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.266 T 12-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 Gene3D G3DSA:3.55.50.30 274 345 4.1E-9 T 12-10-2018 Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 Gene3D G3DSA:3.30.1370.120 346 448 1.1E-22 T 12-10-2018 IPR038591 NolW-like superfamily Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 SMART SM00965 300 348 2.8E-6 T 12-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 PRINTS PR00811 Bacterial general secretion pathway protein D signature 671 689 7.7E-21 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 PRINTS PR00811 Bacterial general secretion pathway protein D signature 694 708 7.7E-21 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 PRINTS PR00811 Bacterial general secretion pathway protein D signature 447 457 7.7E-21 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 PRINTS PR00811 Bacterial general secretion pathway protein D signature 548 572 7.7E-21 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 652 685 - T 12-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 275 706 4.4E-150 T 12-10-2018 IPR013355 Type IV pilus secretin PilQ Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 Pfam PF03958 Bacterial type II/III secretion system short domain 373 447 1.9E-12 T 12-10-2018 IPR005644 NolW-like Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 Pfam PF00263 Bacterial type II and III secretion system protein 552 706 1.3E-45 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 Gene3D G3DSA:2.60.40.3500 29 131 8.4E-7 T 12-10-2018 Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 Gene3D G3DSA:2.60.40.3470 135 262 2.4E-38 T 12-10-2018 Alide_0844 c1aaceebcd9957c9938a5fc82d093e52 713 Pfam PF11741 AMIN domain 47 126 6.6E-10 T 12-10-2018 IPR021731 AMIN domain Alide_3689 8810a0e2cfc1cf5e2eba7b4507d2504a 232 Gene3D G3DSA:1.10.10.10 3 139 1.9E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3689 8810a0e2cfc1cf5e2eba7b4507d2504a 232 SUPERFAMILY SSF55718 121 220 1.09E-5 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Alide_3689 8810a0e2cfc1cf5e2eba7b4507d2504a 232 Pfam PF01638 HxlR-like helix-turn-helix 19 106 4.0E-23 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type Alide_3689 8810a0e2cfc1cf5e2eba7b4507d2504a 232 SUPERFAMILY SSF46785 6 109 3.79E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0839 4d8651a6520b16c8690e49f389661474 771 Gene3D G3DSA:3.40.710.10 246 369 4.3E-9 T 12-10-2018 Alide_0839 4d8651a6520b16c8690e49f389661474 771 Gene3D G3DSA:3.40.710.10 397 744 6.5E-113 T 12-10-2018 Alide_0839 4d8651a6520b16c8690e49f389661474 771 SUPERFAMILY SSF53955 46 256 5.34E-73 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_0839 4d8651a6520b16c8690e49f389661474 771 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 69 709 7.9E-190 T 12-10-2018 Alide_0839 4d8651a6520b16c8690e49f389661474 771 Pfam PF00912 Transglycosylase 59 232 7.4E-62 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_0839 4d8651a6520b16c8690e49f389661474 771 Pfam PF00905 Penicillin binding protein transpeptidase domain 425 692 1.6E-44 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Alide_0839 4d8651a6520b16c8690e49f389661474 771 Pfam PF17092 Penicillin-binding protein OB-like domain 319 423 4.7E-21 T 12-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_0839 4d8651a6520b16c8690e49f389661474 771 SUPERFAMILY SSF56601 214 736 1.01E-125 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Alide_0839 4d8651a6520b16c8690e49f389661474 771 Gene3D G3DSA:1.10.3810.10 53 245 3.4E-74 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3624 aacc37ebf9f69013403a0c798e330707 431 SUPERFAMILY SSF51556 56 362 2.69E-78 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_3624 aacc37ebf9f69013403a0c798e330707 431 Gene3D G3DSA:3.20.20.140 57 367 3.2E-101 T 12-10-2018 Alide_3624 aacc37ebf9f69013403a0c798e330707 431 SUPERFAMILY SSF51338 1 430 1.87E-26 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Alide_3624 aacc37ebf9f69013403a0c798e330707 431 Gene3D G3DSA:2.30.40.10 9 426 3.2E-101 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Alide_3624 aacc37ebf9f69013403a0c798e330707 431 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 23 429 9.1E-84 T 12-10-2018 Alide_3624 aacc37ebf9f69013403a0c798e330707 431 Pfam PF07969 Amidohydrolase family 186 427 1.8E-9 T 12-10-2018 IPR013108 Amidohydrolase 3 Alide_0042 b73389712dfa1b17bfc0b3133258a22d 241 SMART SM00448 1 124 3.6E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0042 b73389712dfa1b17bfc0b3133258a22d 241 Gene3D G3DSA:1.10.10.10 136 235 1.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0042 b73389712dfa1b17bfc0b3133258a22d 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 229 5.1E-16 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_0042 b73389712dfa1b17bfc0b3133258a22d 241 SUPERFAMILY SSF46894 130 230 1.67E-21 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_0042 b73389712dfa1b17bfc0b3133258a22d 241 SMART SM00862 156 229 4.6E-17 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_0042 b73389712dfa1b17bfc0b3133258a22d 241 Gene3D G3DSA:3.40.50.2300 1 135 7.0E-33 T 12-10-2018 Alide_0042 b73389712dfa1b17bfc0b3133258a22d 241 SUPERFAMILY SSF52172 1 138 3.56E-31 T 12-10-2018 IPR011006 CheY-like superfamily Alide_0042 b73389712dfa1b17bfc0b3133258a22d 241 Pfam PF00072 Response regulator receiver domain 3 124 1.1E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2164 7e1cc3ef71185006139d26404194452a 495 SUPERFAMILY SSF50249 39 130 4.46E-15 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_2164 7e1cc3ef71185006139d26404194452a 495 SMART SM00316 37 124 4.1E-4 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_2164 7e1cc3ef71185006139d26404194452a 495 Gene3D G3DSA:3.40.1260.20 408 494 1.7E-5 T 12-10-2018 Alide_2164 7e1cc3ef71185006139d26404194452a 495 Pfam PF10150 Ribonuclease E/G family 126 399 4.8E-95 T 12-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 Alide_2164 7e1cc3ef71185006139d26404194452a 495 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 432 3.0E-145 T 12-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 Alide_2164 7e1cc3ef71185006139d26404194452a 495 Gene3D G3DSA:2.40.50.140 31 130 1.9E-27 T 12-10-2018 Alide_1480 6d595826e1b308fe750190a699bbfb7d 414 Gene3D G3DSA:1.10.150.130 96 205 3.2E-13 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_1480 6d595826e1b308fe750190a699bbfb7d 414 Pfam PF00589 Phage integrase family 257 399 1.5E-33 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1480 6d595826e1b308fe750190a699bbfb7d 414 Gene3D G3DSA:1.10.443.10 247 412 1.5E-42 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_1480 6d595826e1b308fe750190a699bbfb7d 414 Pfam PF13356 Arm DNA-binding domain 7 92 6.6E-18 T 12-10-2018 IPR025166 Integrase, DNA-binding domain Alide_1480 6d595826e1b308fe750190a699bbfb7d 414 Gene3D G3DSA:3.30.160.390 4 93 5.5E-14 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Alide_1480 6d595826e1b308fe750190a699bbfb7d 414 SUPERFAMILY SSF56349 101 406 9.71E-56 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_1637 56c00ea732a5b713fe5128ff8f1edf02 180 ProSitePatterns PS01068 OmpA-like domain. 111 155 - T 12-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 Alide_1637 56c00ea732a5b713fe5128ff8f1edf02 180 PRINTS PR01021 OMPA domain signature 79 101 2.1E-17 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_1637 56c00ea732a5b713fe5128ff8f1edf02 180 PRINTS PR01021 OMPA domain signature 109 124 2.1E-17 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_1637 56c00ea732a5b713fe5128ff8f1edf02 180 PRINTS PR01021 OMPA domain signature 124 140 2.1E-17 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_1637 56c00ea732a5b713fe5128ff8f1edf02 180 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 4 179 29.768 T 12-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 Alide_1637 56c00ea732a5b713fe5128ff8f1edf02 180 Pfam PF00691 OmpA family 78 173 3.4E-22 T 12-10-2018 IPR006665 OmpA-like domain Alide_1637 56c00ea732a5b713fe5128ff8f1edf02 180 Gene3D G3DSA:3.30.1330.60 68 180 1.6E-36 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_1637 56c00ea732a5b713fe5128ff8f1edf02 180 SUPERFAMILY SSF103088 72 177 2.09E-33 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_1637 56c00ea732a5b713fe5128ff8f1edf02 180 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 77 179 7.9E-42 T 12-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 Alide_3461 e448c21f5937f82ee77a66d26dfae1bd 313 SUPERFAMILY SSF48008 154 291 6.8E-20 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_3461 e448c21f5937f82ee77a66d26dfae1bd 313 SMART SM00345 7 65 6.3E-4 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3461 e448c21f5937f82ee77a66d26dfae1bd 313 SMART SM00345 91 147 2.2 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3461 e448c21f5937f82ee77a66d26dfae1bd 313 SMART SM00895 159 284 1.9E-9 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3461 e448c21f5937f82ee77a66d26dfae1bd 313 SUPERFAMILY SSF46785 4 69 3.14E-9 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3461 e448c21f5937f82ee77a66d26dfae1bd 313 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 64 1.3E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3461 e448c21f5937f82ee77a66d26dfae1bd 313 Gene3D G3DSA:1.20.120.530 153 294 7.8E-20 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_3461 e448c21f5937f82ee77a66d26dfae1bd 313 Pfam PF07729 FCD domain 160 283 2.6E-15 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3461 e448c21f5937f82ee77a66d26dfae1bd 313 Gene3D G3DSA:1.10.10.10 1 65 1.6E-9 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2954 9d6d9388315798d5bd5aa9ea6662a980 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 117 9.3E-23 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2954 9d6d9388315798d5bd5aa9ea6662a980 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 3.6E-44 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2954 9d6d9388315798d5bd5aa9ea6662a980 380 SUPERFAMILY SSF47203 228 378 7.73E-47 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2954 9d6d9388315798d5bd5aa9ea6662a980 380 Gene3D G3DSA:2.40.110.10 121 233 4.2E-33 T 12-10-2018 Alide_2954 9d6d9388315798d5bd5aa9ea6662a980 380 Gene3D G3DSA:1.20.140.10 234 378 2.9E-45 T 12-10-2018 Alide_2954 9d6d9388315798d5bd5aa9ea6662a980 380 Gene3D G3DSA:1.10.540.10 3 118 3.8E-26 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2954 9d6d9388315798d5bd5aa9ea6662a980 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 1.5E-20 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2954 9d6d9388315798d5bd5aa9ea6662a980 380 SUPERFAMILY SSF56645 4 240 3.66E-63 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 SMART SM00345 26 84 2.1E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 SMART SM00895 94 218 8.8E-13 T 12-10-2018 IPR011711 GntR, C-terminal Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 SUPERFAMILY SSF46785 18 88 7.44E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 Gene3D G3DSA:1.10.10.10 6 84 8.7E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 1.7E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 1.7E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 83 2.7E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 SUPERFAMILY SSF48008 89 224 8.63E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 Gene3D G3DSA:1.20.120.530 88 231 1.3E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2443 d2d6b0cffb282b406090b15acb7887a2 260 Pfam PF07729 FCD domain 95 217 8.7E-19 T 12-10-2018 IPR011711 GntR, C-terminal Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 Gene3D G3DSA:3.40.50.720 143 261 1.2E-16 T 12-10-2018 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 SUPERFAMILY SSF51971 142 415 4.83E-63 T 12-10-2018 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 145 332 4.9E-19 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 1.9E-20 T 12-10-2018 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 1.9E-20 T 12-10-2018 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 PRINTS PR00419 Adrenodoxin reductase family signature 301 315 1.9E-20 T 12-10-2018 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 Gene3D G3DSA:1.10.1060.10 10 142 1.0E-24 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 Gene3D G3DSA:3.50.50.60 262 414 2.0E-37 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 491 1.3E-221 T 12-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 SUPERFAMILY SSF51971 381 485 9.89E-11 T 12-10-2018 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 23 131 7.4E-26 T 12-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Alide_0855 fe482e7f651f4b53bdf53b8b4223a4eb 492 SUPERFAMILY SSF46548 2 154 3.66E-41 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Alide_0468 c3dcc38a0b374b5a83ffe553dcfb82c6 231 Gene3D G3DSA:1.10.10.60 166 224 7.2E-13 T 12-10-2018 Alide_0468 c3dcc38a0b374b5a83ffe553dcfb82c6 231 SMART SM00448 2 114 2.4E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0468 c3dcc38a0b374b5a83ffe553dcfb82c6 231 SUPERFAMILY SSF52172 1 124 3.84E-35 T 12-10-2018 IPR011006 CheY-like superfamily Alide_0468 c3dcc38a0b374b5a83ffe553dcfb82c6 231 SUPERFAMILY SSF46689 158 222 2.11E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0468 c3dcc38a0b374b5a83ffe553dcfb82c6 231 Pfam PF00072 Response regulator receiver domain 4 115 3.5E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0468 c3dcc38a0b374b5a83ffe553dcfb82c6 231 Pfam PF02954 Bacterial regulatory protein, Fis family 183 220 3.0E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0468 c3dcc38a0b374b5a83ffe553dcfb82c6 231 Gene3D G3DSA:3.40.50.2300 1 131 1.3E-34 T 12-10-2018 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 74 85 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 Pfam PF01820 D-ala D-ala ligase N-terminus 15 96 1.9E-17 T 12-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 14 315 33.819 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 PIRSF PIRSF039102 50 321 3.6E-84 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 PIRSF PIRSF039102 12 57 8.3E-9 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 Gene3D G3DSA:3.30.470.20 96 311 9.0E-72 T 12-10-2018 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 Pfam PF07478 D-ala D-ala ligase C-terminus 115 311 1.9E-55 T 12-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 Gene3D G3DSA:3.40.50.20 3 95 1.9E-32 T 12-10-2018 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 Gene3D G3DSA:3.30.1490.20 122 187 9.0E-72 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 SUPERFAMILY SSF52440 15 107 1.53E-28 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 SUPERFAMILY SSF56059 107 320 2.3E-56 T 12-10-2018 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 256 285 - T 12-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3704 e6aefb98759dd92faf25ae27c8fbd46b 322 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 15 314 8.1E-97 T 12-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_1553 f68bc2581721854655cfd9c522cdd5d4 92 Pfam PF01722 BolA-like protein 18 91 2.3E-23 T 12-10-2018 IPR002634 BolA protein Alide_1553 f68bc2581721854655cfd9c522cdd5d4 92 PIRSF PIRSF003113 1 92 9.0E-23 T 12-10-2018 IPR002634 BolA protein Alide_1553 f68bc2581721854655cfd9c522cdd5d4 92 SUPERFAMILY SSF82657 6 91 5.36E-22 T 12-10-2018 IPR036065 BolA-like superfamily Alide_1553 f68bc2581721854655cfd9c522cdd5d4 92 Gene3D G3DSA:3.30.300.90 9 92 9.3E-25 T 12-10-2018 Alide_3638 af12373290230533c771d4e24940a9f4 78 Pfam PF02954 Bacterial regulatory protein, Fis family 36 72 1.7E-12 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3638 af12373290230533c771d4e24940a9f4 78 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 41 58 3.4E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3638 af12373290230533c771d4e24940a9f4 78 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 58 78 3.4E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3638 af12373290230533c771d4e24940a9f4 78 Gene3D G3DSA:1.10.10.60 1 77 1.6E-23 T 12-10-2018 Alide_3638 af12373290230533c771d4e24940a9f4 78 SUPERFAMILY SSF46689 11 77 4.21E-20 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3638 af12373290230533c771d4e24940a9f4 78 PIRSF PIRSF002097 1 78 3.5E-33 T 12-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 SUPERFAMILY SSF53244 711 838 7.63E-25 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 Gene3D G3DSA:3.30.470.20 195 320 3.9E-20 T 12-10-2018 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 204 287 1.0E-7 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 SUPERFAMILY SSF56059 204 444 3.36E-36 T 12-10-2018 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 SMART SM01209 203 330 0.004 T 12-10-2018 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 SUPERFAMILY SSF53623 433 722 1.57E-42 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 3 852 0.0 T 12-10-2018 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 Pfam PF02875 Mur ligase family, glutamate ligase domain 711 784 1.8E-11 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 Gene3D G3DSA:3.40.1190.10 465 703 2.2E-40 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 Gene3D G3DSA:3.30.470.20 361 454 4.5E-12 T 12-10-2018 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 Pfam PF08245 Mur ligase middle domain 475 685 1.7E-23 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Alide_0781 ec83bd03feca705e24160ecf300c5cf2 863 Gene3D G3DSA:3.90.190.20 716 852 2.8E-17 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 SMART SM00322 303 376 9.0E-4 T 12-10-2018 IPR004087 K Homology domain GO:0003676 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 343 8.8E-121 T 12-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 SUPERFAMILY SSF47794 359 418 4.71E-15 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 426 28.688 T 12-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 SUPERFAMILY SSF54814 281 344 5.43E-16 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Pfam PF08529 NusA N-terminal domain 4 127 3.1E-33 T 12-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Gene3D G3DSA:2.40.50.140 137 200 4.6E-17 T 12-10-2018 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Pfam PF13184 NusA-like KH domain 232 299 1.3E-26 T 12-10-2018 IPR025249 KH domain, NusA-like GO:0003723 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Gene3D G3DSA:3.30.300.20 280 348 3.2E-26 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Pfam PF00575 S1 RNA binding domain 139 194 2.6E-5 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 SUPERFAMILY SSF47794 429 492 2.04E-14 T 12-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 SUPERFAMILY SSF50249 137 201 3.1E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 367 416 1.1E-17 T 12-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 SMART SM00316 136 202 5.0E-7 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Gene3D G3DSA:1.10.150.20 431 489 9.5E-21 T 12-10-2018 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Gene3D G3DSA:3.30.1480.10 1 132 3.4E-39 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Gene3D G3DSA:3.30.300.20 201 279 2.4E-30 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 SUPERFAMILY SSF69705 1 128 8.76E-38 T 12-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Gene3D G3DSA:1.10.150.20 354 423 2.7E-27 T 12-10-2018 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 SUPERFAMILY SSF54814 203 280 9.16E-29 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Alide_1939 ee529b816726afa56f973eec94a0cbb6 494 Pfam PF14520 Helix-hairpin-helix domain 432 487 6.4E-9 T 12-10-2018 Alide_3467 fe0c4dd06d284c33ffd89e1c3f7edf5d 465 SUPERFAMILY SSF55874 299 446 4.85E-23 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3467 fe0c4dd06d284c33ffd89e1c3f7edf5d 465 SUPERFAMILY SSF47384 228 310 2.16E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_3467 fe0c4dd06d284c33ffd89e1c3f7edf5d 465 SMART SM00387 354 464 2.5E-8 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3467 fe0c4dd06d284c33ffd89e1c3f7edf5d 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 440 1.0E-5 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3467 fe0c4dd06d284c33ffd89e1c3f7edf5d 465 SMART SM00388 244 309 2.9E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3467 fe0c4dd06d284c33ffd89e1c3f7edf5d 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 246 309 5.7E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3467 fe0c4dd06d284c33ffd89e1c3f7edf5d 465 Gene3D G3DSA:1.10.287.130 194 306 3.1E-17 T 12-10-2018 Alide_3467 fe0c4dd06d284c33ffd89e1c3f7edf5d 465 Gene3D G3DSA:3.30.565.10 307 456 1.3E-17 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2989 8eea974b9cad81678f419ea415073cad 436 SUPERFAMILY SSF102735 1 130 9.94E-36 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Alide_2989 8eea974b9cad81678f419ea415073cad 436 Gene3D G3DSA:3.30.70.1050 1 115 9.1E-36 T 12-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Alide_2989 8eea974b9cad81678f419ea415073cad 436 Hamap MF_00303 Trigger factor [tig]. 1 423 20.791 T 12-10-2018 IPR005215 Trigger factor GO:0015031 Alide_2989 8eea974b9cad81678f419ea415073cad 436 SUPERFAMILY SSF109998 250 434 1.28E-47 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily Alide_2989 8eea974b9cad81678f419ea415073cad 436 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 264 417 2.7E-34 T 12-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 Alide_2989 8eea974b9cad81678f419ea415073cad 436 TIGRFAM TIGR00115 tig: trigger factor 11 417 1.6E-133 T 12-10-2018 IPR005215 Trigger factor GO:0015031 Alide_2989 8eea974b9cad81678f419ea415073cad 436 Pfam PF05697 Bacterial trigger factor protein (TF) 1 142 3.1E-37 T 12-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Alide_2989 8eea974b9cad81678f419ea415073cad 436 Gene3D G3DSA:1.10.3120.10 116 422 1.4E-90 T 12-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 Alide_2989 8eea974b9cad81678f419ea415073cad 436 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 160 233 2.3E-15 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Alide_2989 8eea974b9cad81678f419ea415073cad 436 Gene3D G3DSA:3.10.50.40 150 248 1.4E-90 T 12-10-2018 Alide_2989 8eea974b9cad81678f419ea415073cad 436 SUPERFAMILY SSF54534 88 243 1.57E-33 T 12-10-2018 Alide_2989 8eea974b9cad81678f419ea415073cad 436 PIRSF PIRSF003095 1 436 1.3E-123 T 12-10-2018 IPR005215 Trigger factor GO:0015031 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Gene3D G3DSA:1.10.287.130 670 744 2.2E-16 T 12-10-2018 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Pfam PF13493 Domain of unknown function (DUF4118) 422 520 1.8E-17 T 12-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 SMART SM00387 789 902 3.0E-31 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Gene3D G3DSA:3.30.565.10 754 903 4.6E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 861 879 3.6E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 827 841 3.6E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 845 855 3.6E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 886 899 3.6E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Gene3D G3DSA:3.40.50.620 247 395 1.2E-12 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Pfam PF00512 His Kinase A (phospho-acceptor) domain 678 744 4.0E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 SUPERFAMILY SSF52402 249 385 4.86E-11 T 12-10-2018 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 794 901 1.3E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 SUPERFAMILY SSF52540 15 225 1.03E-6 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 SUPERFAMILY SSF47384 673 744 1.28E-13 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 SUPERFAMILY SSF55874 735 900 1.31E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Gene3D G3DSA:3.30.450.40 528 669 8.9E-24 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 21 229 7.6E-95 T 12-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Gene3D G3DSA:1.20.120.620 417 519 7.0E-18 T 12-10-2018 IPR038318 KdpD, transmembrane domain superfamily Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 SMART SM00388 677 745 1.9E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Pfam PF00582 Universal stress protein family 249 380 2.3E-10 T 12-10-2018 IPR006016 UspA Alide_3009 bf29660b8418400a6d8555ee036e18b0 909 Gene3D G3DSA:3.40.50.300 18 228 1.3E-98 T 12-10-2018 Alide_1610 8a6d8ef21b1a4bfc2f3a9704b963c628 236 Pfam PF09339 IclR helix-turn-helix domain 22 71 2.5E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_1610 8a6d8ef21b1a4bfc2f3a9704b963c628 236 Gene3D G3DSA:3.30.450.40 167 231 2.7E-11 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_1610 8a6d8ef21b1a4bfc2f3a9704b963c628 236 SMART SM00346 20 109 3.1E-15 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_1610 8a6d8ef21b1a4bfc2f3a9704b963c628 236 SUPERFAMILY SSF46785 22 92 4.32E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1610 8a6d8ef21b1a4bfc2f3a9704b963c628 236 Gene3D G3DSA:3.30.450.40 87 166 1.5E-16 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_1610 8a6d8ef21b1a4bfc2f3a9704b963c628 236 Gene3D G3DSA:1.10.10.10 4 80 1.3E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1610 8a6d8ef21b1a4bfc2f3a9704b963c628 236 SUPERFAMILY SSF55781 85 235 9.16E-30 T 12-10-2018 Alide_1610 8a6d8ef21b1a4bfc2f3a9704b963c628 236 Pfam PF01614 Bacterial transcriptional regulator 170 222 9.4E-7 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_4292 4eecae3494e312db0084e25c44811e85 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 2.9E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4292 4eecae3494e312db0084e25c44811e85 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.9E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4292 4eecae3494e312db0084e25c44811e85 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.9E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4292 4eecae3494e312db0084e25c44811e85 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.9E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4292 4eecae3494e312db0084e25c44811e85 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.9E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4292 4eecae3494e312db0084e25c44811e85 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.9E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4292 4eecae3494e312db0084e25c44811e85 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.5E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4292 4eecae3494e312db0084e25c44811e85 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.5E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4292 4eecae3494e312db0084e25c44811e85 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.5E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4292 4eecae3494e312db0084e25c44811e85 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 252 2.7E-62 T 12-10-2018 Alide_4292 4eecae3494e312db0084e25c44811e85 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_4292 4eecae3494e312db0084e25c44811e85 255 SUPERFAMILY SSF51735 6 253 5.34E-80 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4292 4eecae3494e312db0084e25c44811e85 255 Gene3D G3DSA:3.40.50.720 1 254 4.0E-80 T 12-10-2018 Alide_4292 4eecae3494e312db0084e25c44811e85 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 190 4.9E-4 T 12-10-2018 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 Gene3D G3DSA:3.30.470.130 1 452 6.4E-178 T 12-10-2018 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 SUPERFAMILY SSF56059 118 326 9.55E-59 T 12-10-2018 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 SMART SM00878 338 447 1.1E-57 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 SUPERFAMILY SSF51230 506 577 8.38E-15 T 12-10-2018 IPR011053 Single hybrid motif Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 537 554 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 Pfam PF00364 Biotin-requiring enzyme 515 561 8.1E-12 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 325 4.0E-77 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 SUPERFAMILY SSF52440 4 115 2.66E-45 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 Pfam PF02785 Biotin carboxylase C-terminal domain 338 447 1.4E-36 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 Pfam PF00289 Biotin carboxylase, N-terminal domain 5 113 3.3E-42 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 SUPERFAMILY SSF51246 334 449 6.28E-37 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_1634 e622a02f13cbae7f1a394b44460d7a49 580 Gene3D G3DSA:2.40.50.100 510 579 1.3E-18 T 12-10-2018 Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 67 83 3.3E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 67 3.3E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 SUPERFAMILY SSF48008 101 232 2.88E-9 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 SMART SM00345 35 93 3.2E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 Gene3D G3DSA:1.10.10.10 15 94 4.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 Gene3D G3DSA:1.20.120.530 96 232 9.6E-19 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 Pfam PF07729 FCD domain 104 224 2.1E-8 T 12-10-2018 IPR011711 GntR, C-terminal Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 32 92 4.9E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 SUPERFAMILY SSF46785 30 97 8.17E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0366 8f30a9404e59ce3053276d5250462cdc 243 SMART SM00895 103 225 0.0017 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3180 1b97cbcef8ad94f3a25baf77e1e840a2 211 SUPERFAMILY SSF88659 137 197 1.07E-15 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_3180 1b97cbcef8ad94f3a25baf77e1e840a2 211 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 55 86 - T 12-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_3180 1b97cbcef8ad94f3a25baf77e1e840a2 211 Gene3D G3DSA:1.10.1740.10 10 128 5.7E-32 T 12-10-2018 Alide_3180 1b97cbcef8ad94f3a25baf77e1e840a2 211 Pfam PF08281 Sigma-70, region 4 144 194 7.3E-17 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_3180 1b97cbcef8ad94f3a25baf77e1e840a2 211 SUPERFAMILY SSF88946 9 106 2.16E-27 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_3180 1b97cbcef8ad94f3a25baf77e1e840a2 211 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 29 196 7.8E-26 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_3180 1b97cbcef8ad94f3a25baf77e1e840a2 211 Pfam PF04542 Sigma-70 region 2 34 95 1.9E-14 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Alide_3180 1b97cbcef8ad94f3a25baf77e1e840a2 211 Gene3D G3DSA:1.10.10.10 139 201 8.1E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3180 1b97cbcef8ad94f3a25baf77e1e840a2 211 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 12 203 2.4E-72 T 12-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_2787 541e9cadde69c15dca20c477b605b511 327 PIRSF PIRSF017082 1 326 4.0E-94 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2787 541e9cadde69c15dca20c477b605b511 327 SUPERFAMILY SSF53850 101 288 1.04E-15 T 12-10-2018 Alide_2787 541e9cadde69c15dca20c477b605b511 327 Gene3D G3DSA:3.40.190.10 129 252 1.3E-114 T 12-10-2018 Alide_2787 541e9cadde69c15dca20c477b605b511 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 323 2.0E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2787 541e9cadde69c15dca20c477b605b511 327 Gene3D G3DSA:3.40.190.150 32 317 1.3E-114 T 12-10-2018 Alide_3966 d23d85fa278ba36ec0abd883d3a679e5 173 Gene3D G3DSA:3.30.160.20 8 78 5.6E-26 T 12-10-2018 Alide_3966 d23d85fa278ba36ec0abd883d3a679e5 173 SUPERFAMILY SSF54768 15 82 2.3E-21 T 12-10-2018 Alide_3966 d23d85fa278ba36ec0abd883d3a679e5 173 Pfam PF00333 Ribosomal protein S5, N-terminal domain 17 80 6.2E-25 T 12-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 Alide_3966 d23d85fa278ba36ec0abd883d3a679e5 173 Gene3D G3DSA:3.30.230.10 80 173 2.9E-36 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_3966 d23d85fa278ba36ec0abd883d3a679e5 173 SUPERFAMILY SSF54211 85 165 1.06E-27 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_3966 d23d85fa278ba36ec0abd883d3a679e5 173 ProSitePatterns PS00585 Ribosomal protein S5 signature. 34 66 - T 12-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site Alide_3966 d23d85fa278ba36ec0abd883d3a679e5 173 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 16 169 1.6E-63 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Alide_3966 d23d85fa278ba36ec0abd883d3a679e5 173 Pfam PF03719 Ribosomal protein S5, C-terminal domain 92 163 3.7E-30 T 12-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 Alide_3966 d23d85fa278ba36ec0abd883d3a679e5 173 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 169 33.421 T 12-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Alide_2599 d66dc9678e9d8f2c2798cf4e1cd3a974 175 SUPERFAMILY SSF53155 9 90 2.94E-14 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Alide_2599 d66dc9678e9d8f2c2798cf4e1cd3a974 175 Gene3D G3DSA:1.10.10.10 85 169 1.4E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2599 d66dc9678e9d8f2c2798cf4e1cd3a974 175 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 11 166 38.048 T 12-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 Alide_2599 d66dc9678e9d8f2c2798cf4e1cd3a974 175 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 136 142 - T 12-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Alide_2599 d66dc9678e9d8f2c2798cf4e1cd3a974 175 Gene3D G3DSA:3.30.160.70 9 81 1.7E-15 T 12-10-2018 Alide_2599 d66dc9678e9d8f2c2798cf4e1cd3a974 175 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 87 166 3.5E-32 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Alide_2599 d66dc9678e9d8f2c2798cf4e1cd3a974 175 SUPERFAMILY SSF46767 85 166 7.19E-31 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 Alide_2599 d66dc9678e9d8f2c2798cf4e1cd3a974 175 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 86 165 8.1E-32 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Alide_2780 3d59014093388b6543c0030b147ec780 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 78 5.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2780 3d59014093388b6543c0030b147ec780 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 62 5.6E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2780 3d59014093388b6543c0030b147ec780 260 SUPERFAMILY SSF46785 21 92 1.4E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2780 3d59014093388b6543c0030b147ec780 260 Gene3D G3DSA:3.40.1410.10 107 242 1.3E-36 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_2780 3d59014093388b6543c0030b147ec780 260 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 88 5.8E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2780 3d59014093388b6543c0030b147ec780 260 Pfam PF07702 UTRA domain 110 246 2.2E-36 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_2780 3d59014093388b6543c0030b147ec780 260 Gene3D G3DSA:1.10.10.10 22 89 9.8E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2780 3d59014093388b6543c0030b147ec780 260 SUPERFAMILY SSF64288 76 252 1.57E-44 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_2780 3d59014093388b6543c0030b147ec780 260 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 25 251 2.5E-89 T 12-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 Alide_2780 3d59014093388b6543c0030b147ec780 260 SMART SM00345 29 88 1.1E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2780 3d59014093388b6543c0030b147ec780 260 SMART SM00866 109 246 6.5E-37 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_3029 5d01704598e9b8180b711f82ce46ea0b 304 SMART SM00244 20 188 7.5E-16 T 12-10-2018 IPR001107 Band 7 domain Alide_3029 5d01704598e9b8180b711f82ce46ea0b 304 Gene3D G3DSA:3.30.479.30 51 190 9.0E-19 T 12-10-2018 Alide_3029 5d01704598e9b8180b711f82ce46ea0b 304 TIGRFAM TIGR01932 hflC: HflC protein 160 286 3.7E-40 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Alide_3029 5d01704598e9b8180b711f82ce46ea0b 304 Pfam PF01145 SPFH domain / Band 7 family 24 202 6.8E-30 T 12-10-2018 IPR001107 Band 7 domain Alide_3029 5d01704598e9b8180b711f82ce46ea0b 304 SUPERFAMILY SSF117892 54 194 2.48E-23 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily Alide_3029 5d01704598e9b8180b711f82ce46ea0b 304 PIRSF PIRSF005651 1 295 1.1E-81 T 12-10-2018 IPR010200 HflC GO:0016021|GO:0052547 Alide_1559 940422f8b003e39a01616f01c954ab2b 317 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 262 3.1E-36 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3345 f4cee5b77f53c4fed965fd4ed6e21402 417 Pfam PF02687 FtsX-like permease family 304 410 4.9E-13 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Alide_3345 f4cee5b77f53c4fed965fd4ed6e21402 417 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 417 4.9E-140 T 12-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 Alide_3345 f4cee5b77f53c4fed965fd4ed6e21402 417 Pfam PF12704 MacB-like periplasmic core domain 30 244 4.9E-19 T 12-10-2018 IPR025857 MacB-like periplasmic core domain Alide_3789 adf76de94196e523a87aad858388637a 578 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 70 495 2.2E-58 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Alide_3789 adf76de94196e523a87aad858388637a 578 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 185 210 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site Alide_3789 adf76de94196e523a87aad858388637a 578 Gene3D G3DSA:1.20.1730.10 58 569 1.2E-56 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily Alide_3789 adf76de94196e523a87aad858388637a 578 Pfam PF00474 Sodium:solute symporter family 70 495 1.1E-108 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Alide_3652 8279f3280ec4937644109e90915205a1 259 Gene3D G3DSA:3.90.226.10 2 199 8.3E-77 T 12-10-2018 Alide_3652 8279f3280ec4937644109e90915205a1 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 258 6.5E-84 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3652 8279f3280ec4937644109e90915205a1 259 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_3652 8279f3280ec4937644109e90915205a1 259 Gene3D G3DSA:1.10.12.10 202 258 1.5E-26 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3652 8279f3280ec4937644109e90915205a1 259 SUPERFAMILY SSF52096 3 258 3.13E-89 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3642 dbce3fd582391cef5866c0efc7b6be1e 335 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 331 6.8E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3642 dbce3fd582391cef5866c0efc7b6be1e 335 PIRSF PIRSF017082 1 334 5.5E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3642 dbce3fd582391cef5866c0efc7b6be1e 335 SUPERFAMILY SSF53850 119 286 1.52E-6 T 12-10-2018 Alide_3642 dbce3fd582391cef5866c0efc7b6be1e 335 Gene3D G3DSA:3.40.190.150 38 325 1.7E-93 T 12-10-2018 Alide_3642 dbce3fd582391cef5866c0efc7b6be1e 335 Gene3D G3DSA:3.40.190.10 135 260 1.7E-93 T 12-10-2018 Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 SUPERFAMILY SSF52096 486 796 1.44E-38 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 Gene3D G3DSA:1.10.1040.10 195 308 1.5E-18 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 Gene3D G3DSA:3.40.50.720 1 194 3.1E-57 T 12-10-2018 Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 Gene3D G3DSA:3.90.226.10 481 688 2.4E-30 T 12-10-2018 Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8 191 1.7E-44 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 194 295 1.0E-11 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 Pfam PF00378 Enoyl-CoA hydratase/isomerase 504 640 3.1E-20 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 SUPERFAMILY SSF48179 192 313 5.87E-19 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 SUPERFAMILY SSF51735 5 192 4.96E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0677 d7369945d079b687a1b2991a22fe06d5 800 SUPERFAMILY SSF48179 344 463 2.21E-17 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_0525 e9491af0439fc4cc3b5440dc76977936 167 SUPERFAMILY SSF54637 8 159 2.13E-33 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0525 e9491af0439fc4cc3b5440dc76977936 167 Gene3D G3DSA:3.10.129.10 2 159 2.2E-33 T 12-10-2018 Alide_0525 e9491af0439fc4cc3b5440dc76977936 167 Pfam PF01575 MaoC like domain 19 120 2.5E-6 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_3049 57680035f2a96430a5df84c22c873550 526 Gene3D G3DSA:2.60.40.380 32 141 3.0E-37 T 12-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 Alide_3049 57680035f2a96430a5df84c22c873550 526 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 42 138 2.4E-31 T 12-10-2018 IPR032093 Phospholipase D, N-terminal Alide_3049 57680035f2a96430a5df84c22c873550 526 Pfam PF09423 PhoD-like phosphatase 152 494 5.8E-102 T 12-10-2018 IPR018946 Alkaline phosphatase D-related Alide_3049 57680035f2a96430a5df84c22c873550 526 Gene3D G3DSA:3.60.21.70 142 526 1.4E-114 T 12-10-2018 IPR038607 PhoD-like superfamily Alide_3049 57680035f2a96430a5df84c22c873550 526 SUPERFAMILY SSF56300 147 492 2.78E-29 T 12-10-2018 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 SMART SM00493 1 122 3.5E-24 T 12-10-2018 IPR006171 TOPRIM domain Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 Gene3D G3DSA:3.40.50.140 1 149 2.6E-51 T 12-10-2018 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 Gene3D G3DSA:1.10.290.10 280 375 1.0E-74 T 12-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 308 323 - T 12-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 Gene3D G3DSA:1.10.460.10 156 210 1.0E-74 T 12-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 Pfam PF01751 Toprim domain 3 128 7.8E-17 T 12-10-2018 IPR006171 TOPRIM domain Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 Gene3D G3DSA:2.70.20.10 211 279 1.0E-74 T 12-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 Pfam PF01131 DNA topoisomerase 152 375 5.5E-57 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 SUPERFAMILY SSF56712 1 374 2.35E-111 T 12-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 96 109 3.8E-16 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 3.8E-16 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 187 205 3.8E-16 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4004 67de2ac28aa017f8c40d9b13b2beb705 390 SMART SM00436 122 217 1.6E-35 T 12-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Alide_3148 24194058cec279909630503a5fabaff2 269 Pfam PF00290 Tryptophan synthase alpha chain 8 251 1.6E-82 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_3148 24194058cec279909630503a5fabaff2 269 SUPERFAMILY SSF51366 1 252 3.01E-87 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Alide_3148 24194058cec279909630503a5fabaff2 269 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 12-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_3148 24194058cec279909630503a5fabaff2 269 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 251 1.9E-68 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_3148 24194058cec279909630503a5fabaff2 269 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 266 33.208 T 12-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_3148 24194058cec279909630503a5fabaff2 269 Gene3D G3DSA:3.20.20.70 1 269 7.0E-96 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00145 Argininosuccinate lyase family signature 248 272 1.1E-67 T 12-10-2018 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00145 Argininosuccinate lyase family signature 292 308 1.1E-67 T 12-10-2018 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00145 Argininosuccinate lyase family signature 159 179 1.1E-67 T 12-10-2018 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00145 Argininosuccinate lyase family signature 210 226 1.1E-67 T 12-10-2018 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00145 Argininosuccinate lyase family signature 327 346 1.1E-67 T 12-10-2018 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00145 Argininosuccinate lyase family signature 118 140 1.1E-67 T 12-10-2018 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 Gene3D G3DSA:1.20.200.10 136 477 2.8E-183 T 12-10-2018 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 Pfam PF00206 Lyase 25 317 2.2E-73 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 Pfam PF14698 Argininosuccinate lyase C-terminal 392 458 3.5E-23 T 12-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00149 Fumarate lyase superfamily signature 248 275 1.3E-27 T 12-10-2018 IPR000362 Fumarate lyase family Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00149 Fumarate lyase superfamily signature 292 308 1.3E-27 T 12-10-2018 IPR000362 Fumarate lyase family Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00149 Fumarate lyase superfamily signature 164 182 1.3E-27 T 12-10-2018 IPR000362 Fumarate lyase family Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 PRINTS PR00149 Fumarate lyase superfamily signature 119 137 1.3E-27 T 12-10-2018 IPR000362 Fumarate lyase family Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 ProSitePatterns PS00163 Fumarate lyases signature. 292 301 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 SUPERFAMILY SSF48557 21 484 8.01E-143 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 TIGRFAM TIGR00838 argH: argininosuccinate lyase 21 484 9.6E-181 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 Hamap MF_00006 Argininosuccinate lyase [argH]. 19 482 42.559 T 12-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 Gene3D G3DSA:1.10.275.10 42 246 2.8E-183 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal Alide_3223 ac6c54721dcba48d1a69ca8d5d63fc54 486 Gene3D G3DSA:1.10.40.30 389 461 2.8E-183 T 12-10-2018 Alide_1086 c8de95731fd2ed9de913bf1217d933de 253 SMART SM00062 21 249 1.5E-68 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1086 c8de95731fd2ed9de913bf1217d933de 253 SUPERFAMILY SSF53850 1 250 1.09E-66 T 12-10-2018 Alide_1086 c8de95731fd2ed9de913bf1217d933de 253 Gene3D G3DSA:3.40.190.10 23 245 3.1E-77 T 12-10-2018 Alide_1086 c8de95731fd2ed9de913bf1217d933de 253 SMART SM00079 21 248 0.0056 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Alide_1086 c8de95731fd2ed9de913bf1217d933de 253 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 22 247 1.3E-64 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1086 c8de95731fd2ed9de913bf1217d933de 253 Gene3D G3DSA:3.40.190.10 107 206 3.1E-77 T 12-10-2018 Alide_1086 c8de95731fd2ed9de913bf1217d933de 253 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 44 57 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 SUPERFAMILY SSF47807 173 292 1.14E-28 T 12-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 SUPERFAMILY SSF56672 519 921 9.34E-153 T 12-10-2018 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Gene3D G3DSA:1.10.150.20 702 845 1.6E-108 T 12-10-2018 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 ProSitePatterns PS00447 DNA polymerase family A signature. 747 766 - T 12-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Gene3D G3DSA:3.40.50.1010 7 256 5.3E-84 T 12-10-2018 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 SMART SM00279 175 210 1.8E-11 T 12-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 SMART SM00474 325 511 2.7E-29 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 173 258 5.0E-24 T 12-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Pfam PF00476 DNA polymerase family A 544 918 4.7E-149 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Gene3D G3DSA:3.30.70.370 657 917 1.6E-108 T 12-10-2018 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 806 817 1.2E-75 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 671 686 1.2E-75 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 693 716 1.2E-75 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 784 795 1.2E-75 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 838 854 1.2E-75 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 648 670 1.2E-75 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 723 736 1.2E-75 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 747 772 1.2E-75 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 868 881 1.2E-75 T 12-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Pfam PF01612 3'-5' exonuclease 325 511 9.0E-34 T 12-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 7 172 3.2E-48 T 12-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 SUPERFAMILY SSF88723 5 172 1.01E-52 T 12-10-2018 IPR029060 PIN-like domain superfamily Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Gene3D G3DSA:1.10.150.20 176 248 5.3E-84 T 12-10-2018 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 SUPERFAMILY SSF53098 325 511 4.45E-51 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Gene3D G3DSA:1.20.1060.10 536 651 8.5E-41 T 12-10-2018 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 Gene3D G3DSA:3.30.420.10 323 535 3.9E-61 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 SMART SM00475 4 269 1.2E-106 T 12-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 TIGRFAM TIGR00593 pola: DNA polymerase I 7 921 2.2E-260 T 12-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_1294 d72e0216264f95e78cd076edd8a9611d 921 SMART SM00482 679 885 1.1E-108 T 12-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.1E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 8.4E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 Gene3D G3DSA:3.40.190.10 94 307 2.3E-63 T 12-10-2018 Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 Gene3D G3DSA:3.40.190.10 185 283 2.3E-63 T 12-10-2018 Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 SUPERFAMILY SSF53850 92 309 2.44E-45 T 12-10-2018 Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 SUPERFAMILY SSF46785 6 86 6.35E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 Gene3D G3DSA:1.10.10.10 3 89 9.0E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0110 8f058c539b00c64b4d1ec87bcf264f61 323 Pfam PF03466 LysR substrate binding domain 98 312 2.7E-27 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0429 da967d9ed08b210477a0a4c3bb3b1879 326 TIGRFAM TIGR00510 lipA: lipoyl synthase 35 320 2.9E-129 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Alide_0429 da967d9ed08b210477a0a4c3bb3b1879 326 SMART SM00729 90 298 3.6E-21 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Alide_0429 da967d9ed08b210477a0a4c3bb3b1879 326 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 31 79 1.5E-7 T 12-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Alide_0429 da967d9ed08b210477a0a4c3bb3b1879 326 Gene3D G3DSA:3.20.20.70 87 299 7.2E-25 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0429 da967d9ed08b210477a0a4c3bb3b1879 326 Hamap MF_00206 Lipoyl synthase [lipA]. 1 326 155.637 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Alide_0429 da967d9ed08b210477a0a4c3bb3b1879 326 Pfam PF04055 Radical SAM superfamily 97 256 2.3E-16 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_0429 da967d9ed08b210477a0a4c3bb3b1879 326 PIRSF PIRSF005963 2 325 2.8E-128 T 12-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Alide_0429 da967d9ed08b210477a0a4c3bb3b1879 326 SUPERFAMILY SSF102114 58 322 9.94E-72 T 12-10-2018 Alide_2650 2eb99b25cc79b2bdecd333fe414f744a 311 Pfam PF04444 Catechol dioxygenase N terminus 27 94 6.8E-23 T 12-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 Alide_2650 2eb99b25cc79b2bdecd333fe414f744a 311 Pfam PF00775 Dioxygenase 105 293 1.3E-66 T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Alide_2650 2eb99b25cc79b2bdecd333fe414f744a 311 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 7 292 5.0E-144 T 12-10-2018 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 Alide_2650 2eb99b25cc79b2bdecd333fe414f744a 311 Gene3D G3DSA:2.60.130.10 1 311 2.7E-120 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Alide_2650 2eb99b25cc79b2bdecd333fe414f744a 311 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 136 164 - T 12-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 Alide_2650 2eb99b25cc79b2bdecd333fe414f744a 311 SUPERFAMILY SSF49482 4 293 7.59E-97 T 12-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 Alide_4166 a592b9bd5d68f057ef3f64e8f8f567ee 335 PIRSF PIRSF017082 3 334 3.2E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4166 a592b9bd5d68f057ef3f64e8f8f567ee 335 Gene3D G3DSA:3.40.190.10 134 258 2.8E-97 T 12-10-2018 Alide_4166 a592b9bd5d68f057ef3f64e8f8f567ee 335 Gene3D G3DSA:3.40.190.150 38 324 2.8E-97 T 12-10-2018 Alide_4166 a592b9bd5d68f057ef3f64e8f8f567ee 335 SUPERFAMILY SSF53850 121 294 1.32E-8 T 12-10-2018 Alide_4166 a592b9bd5d68f057ef3f64e8f8f567ee 335 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 330 3.4E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Gene3D G3DSA:3.30.54.20 130 186 4.2E-63 T 12-10-2018 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 637 34.41 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Gene3D G3DSA:3.30.980.10 69 221 4.2E-63 T 12-10-2018 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Pfam PF02824 TGS domain 3 61 1.6E-8 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 SUPERFAMILY SSF55186 63 240 2.35E-68 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 169 218 1.5E-12 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 SUPERFAMILY SSF52954 529 636 7.25E-28 T 12-10-2018 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 633 2.5E-217 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 SMART SM00863 169 218 1.2E-23 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Gene3D G3DSA:3.30.930.10 222 530 1.6E-129 T 12-10-2018 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 SUPERFAMILY SSF81271 3 61 2.22E-14 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 SUPERFAMILY SSF55681 242 525 2.87E-102 T 12-10-2018 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Pfam PF03129 Anticodon binding domain 540 632 2.6E-16 T 12-10-2018 IPR004154 Anticodon-binding Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Gene3D G3DSA:3.10.20.30 1 62 1.8E-20 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Gene3D G3DSA:3.40.50.800 531 639 1.1E-26 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 320 528 2.7E-42 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 7.3E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 7.3E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 7.3E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 7.3E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Alide_2513 1d5939bd10dd522f55643cf48c7a9b3d 639 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 7.3E-53 T 12-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Alide_0534 13914dddc182ce68afb26acfc274620b 219 Pfam PF03352 Methyladenine glycosylase 26 204 1.5E-71 T 12-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 Alide_0534 13914dddc182ce68afb26acfc274620b 219 SUPERFAMILY SSF48150 22 204 1.8E-69 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Alide_0534 13914dddc182ce68afb26acfc274620b 219 Gene3D G3DSA:1.10.340.30 21 209 4.8E-75 T 12-10-2018 Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 SUPERFAMILY SSF56042 828 1078 2.99E-44 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1083 1338 1.2E-97 T 12-10-2018 Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Pfam PF02769 AIR synthase related protein, C-terminal domain 840 995 3.2E-13 T 12-10-2018 IPR010918 PurM-like, C-terminal domain Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Pfam PF02769 AIR synthase related protein, C-terminal domain 436 592 6.5E-27 T 12-10-2018 IPR010918 PurM-like, C-terminal domain Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 5 1339 20.126 T 12-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Gene3D G3DSA:3.90.650.10 817 1026 3.1E-27 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Gene3D G3DSA:3.90.650.10 424 614 6.6E-54 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Gene3D G3DSA:3.30.1330.10 223 423 2.1E-40 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 SMART SM01211 1083 1338 2.5E-135 T 12-10-2018 Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 SUPERFAMILY SSF109736 164 229 2.88E-21 T 12-10-2018 Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 SUPERFAMILY SSF82697 5 160 8.37E-37 T 12-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Gene3D G3DSA:1.10.8.750 163 222 1.5E-26 T 12-10-2018 Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 8 1338 0.0 T 12-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 SUPERFAMILY SSF56042 436 663 4.49E-50 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Gene3D G3DSA:3.40.50.880 1027 1339 1.4E-122 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 SUPERFAMILY SSF55326 230 429 2.41E-53 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 Gene3D G3DSA:3.30.1330.10 631 816 4.5E-23 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 SUPERFAMILY SSF55326 630 823 2.62E-64 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_2611 48faaba3726fb55a1d6a7b67535bf0e4 1339 SUPERFAMILY SSF52317 1080 1338 3.06E-87 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_1951 ccf2454120140d31b4264945131a30ce 108 Pfam PF03658 RnfH family Ubiquitin 6 83 2.6E-18 T 12-10-2018 IPR005346 RnfH protein Alide_1951 ccf2454120140d31b4264945131a30ce 108 SUPERFAMILY SSF54285 3 75 7.59E-14 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Alide_1951 ccf2454120140d31b4264945131a30ce 108 Gene3D G3DSA:3.10.20.280 1 85 1.1E-18 T 12-10-2018 IPR037021 RnfH superfamily Alide_1951 ccf2454120140d31b4264945131a30ce 108 Hamap MF_00460 Protein RnfH [rnfH]. 5 91 16.224 T 12-10-2018 IPR005346 RnfH protein Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 2.8E-38 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 2.8E-38 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 2.8E-38 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 2.8E-38 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 2.8E-38 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PIRSF PIRSF000350 1 463 1.2E-79 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 1.2E-66 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 1.2E-66 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 1.2E-66 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 1.2E-66 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 1.2E-66 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 1.2E-66 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 1.2E-66 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 1.2E-66 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.2E-66 T 12-10-2018 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 Gene3D G3DSA:3.30.390.30 347 467 1.9E-40 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 SUPERFAMILY SSF51905 5 370 5.1E-56 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 7 467 1.6E-161 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 8.1E-65 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 Gene3D G3DSA:3.50.50.60 8 335 3.3E-110 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 Gene3D G3DSA:3.50.50.60 158 279 3.3E-110 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 456 7.2E-32 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Alide_2406 446ef9c5a6e06d86a361e423e49e4a87 467 SUPERFAMILY SSF55424 347 466 2.06E-36 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 Gene3D G3DSA:3.40.47.10 6 281 1.5E-152 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 400 3.8E-214 T 12-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 Pfam PF02803 Thiolase, C-terminal domain 276 399 1.3E-43 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 SUPERFAMILY SSF53901 276 399 3.76E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 8.5E-136 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 Pfam PF00108 Thiolase, N-terminal domain 5 268 1.1E-75 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 SUPERFAMILY SSF53901 4 275 1.03E-79 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 Gene3D G3DSA:3.40.47.10 141 397 1.5E-152 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_3512 bd7e343dd59a88b6adc41c1efc78c8e5 400 PIRSF PIRSF000429 1 400 3.4E-130 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_1332 fdcfb12037716f074314e05621226947 641 Pfam PF10410 DnaB-helicase binding domain of primase 369 417 1.9E-10 T 12-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 Alide_1332 fdcfb12037716f074314e05621226947 641 Pfam PF08275 DNA primase catalytic core, N-terminal domain 136 252 1.0E-36 T 12-10-2018 IPR013264 DNA primase, catalytic core, N-terminal Alide_1332 fdcfb12037716f074314e05621226947 641 SMART SM00400 34 88 5.3E-33 T 12-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Alide_1332 fdcfb12037716f074314e05621226947 641 Pfam PF13662 Toprim domain 261 323 1.2E-14 T 12-10-2018 IPR006171 TOPRIM domain Alide_1332 fdcfb12037716f074314e05621226947 641 Pfam PF01807 CHC2 zinc finger 4 98 6.6E-39 T 12-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Alide_1332 fdcfb12037716f074314e05621226947 641 Hamap MF_00974 DNA primase [dnaG]. 2 635 27.201 T 12-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Alide_1332 fdcfb12037716f074314e05621226947 641 SMART SM00493 259 330 1.5E-13 T 12-10-2018 IPR006171 TOPRIM domain Alide_1332 fdcfb12037716f074314e05621226947 641 Gene3D G3DSA:3.90.980.10 111 240 2.8E-38 T 12-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily Alide_1332 fdcfb12037716f074314e05621226947 641 Gene3D G3DSA:3.40.1360.10 241 367 2.2E-40 T 12-10-2018 Alide_1332 fdcfb12037716f074314e05621226947 641 TIGRFAM TIGR01391 dnaG: DNA primase 3 416 9.7E-135 T 12-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 Alide_1332 fdcfb12037716f074314e05621226947 641 SUPERFAMILY SSF57783 3 97 9.35E-37 T 12-10-2018 Alide_1332 fdcfb12037716f074314e05621226947 641 SUPERFAMILY SSF56731 119 418 3.4E-99 T 12-10-2018 Alide_1332 fdcfb12037716f074314e05621226947 641 Gene3D G3DSA:3.90.580.10 1 100 1.7E-39 T 12-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 Alide_1332 fdcfb12037716f074314e05621226947 641 Gene3D G3DSA:1.20.50.20 368 423 5.8E-6 T 12-10-2018 Alide_2795 4ad6a713f9040cc32122244cf3665b8f 694 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 48 683 5.4E-194 T 12-10-2018 IPR019899 Sodium/solute symporter, VC2705 subfamily Alide_2795 4ad6a713f9040cc32122244cf3665b8f 694 ProSitePatterns PS00018 EF-hand calcium-binding domain. 481 493 - T 12-10-2018 IPR018247 EF-Hand 1, calcium-binding site Alide_2795 4ad6a713f9040cc32122244cf3665b8f 694 Pfam PF00474 Sodium:solute symporter family 72 237 4.5E-29 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Alide_2795 4ad6a713f9040cc32122244cf3665b8f 694 Pfam PF00474 Sodium:solute symporter family 510 625 1.1E-17 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Alide_2795 4ad6a713f9040cc32122244cf3665b8f 694 Gene3D G3DSA:1.20.1730.10 357 658 2.1E-22 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily Alide_2795 4ad6a713f9040cc32122244cf3665b8f 694 Gene3D G3DSA:1.20.1730.10 62 271 8.7E-37 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 317 336 3.7E-22 T 12-10-2018 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 486 3.7E-22 T 12-10-2018 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 524 536 3.7E-22 T 12-10-2018 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 488 503 3.7E-22 T 12-10-2018 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 208 219 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 276 564 1.1E-102 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 Gene3D G3DSA:3.50.30.10 7 257 1.4E-71 T 12-10-2018 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 471 489 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 179 580 2.9E-124 T 12-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 PIRSF PIRSF000732 1 587 1.1E-195 T 12-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 Pfam PF05524 PEP-utilising enzyme, N-terminal 6 129 7.1E-28 T 12-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 SUPERFAMILY SSF47831 27 146 3.27E-31 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 Gene3D G3DSA:3.20.20.60 258 588 7.4E-106 T 12-10-2018 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 Pfam PF00391 PEP-utilising enzyme, mobile domain 180 249 5.1E-24 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 SUPERFAMILY SSF52009 171 269 2.75E-29 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 SUPERFAMILY SSF51621 273 571 2.12E-95 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_0428 696f4b4cbf098238e64b330c9de2a175 588 Gene3D G3DSA:1.10.274.10 24 167 1.4E-71 T 12-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 14 236 1.1E-83 T 12-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 Pfam PF04539 Sigma-70 region 3 96 145 1.8E-8 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 PIRSF PIRSF000770 1 238 9.0E-39 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 Gene3D G3DSA:1.20.140.160 84 237 6.6E-45 T 12-10-2018 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 235 1.3E-32 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 SUPERFAMILY SSF88659 86 157 2.18E-13 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 Pfam PF04542 Sigma-70 region 2 13 85 4.1E-17 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 SUPERFAMILY SSF88946 3 85 3.53E-25 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 Pfam PF04545 Sigma-70, region 4 184 232 5.3E-17 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 SUPERFAMILY SSF88659 148 237 3.18E-22 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 2 238 61.927 T 12-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 PRINTS PR00046 Major sigma-70 factor signature 220 231 2.6E-10 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 PRINTS PR00046 Major sigma-70 factor signature 40 53 2.6E-10 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 PRINTS PR00046 Major sigma-70 factor signature 205 220 2.6E-10 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 PRINTS PR00046 Major sigma-70 factor signature 188 200 2.6E-10 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 205 231 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3874 b0adb758ed5d9c00fe12e3d56a56b960 238 Gene3D G3DSA:1.10.1740.10 2 82 3.3E-30 T 12-10-2018 Alide_2296 666ded8a8c9bec02225d81411752ad33 323 Gene3D G3DSA:3.40.190.150 27 314 3.9E-52 T 12-10-2018 Alide_2296 666ded8a8c9bec02225d81411752ad33 323 Gene3D G3DSA:3.40.190.10 121 249 3.9E-52 T 12-10-2018 Alide_2296 666ded8a8c9bec02225d81411752ad33 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 314 3.4E-19 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2296 666ded8a8c9bec02225d81411752ad33 323 PIRSF PIRSF017082 1 323 1.3E-63 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2296 666ded8a8c9bec02225d81411752ad33 323 SUPERFAMILY SSF53850 84 226 2.86E-6 T 12-10-2018 Alide_1005 25e0bb6d195f88ea2eaa04a2b9a15c5d 325 SMART SM00797 23 313 2.3E-119 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Alide_1005 25e0bb6d195f88ea2eaa04a2b9a15c5d 325 SUPERFAMILY SSF50891 193 303 1.78E-8 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_1005 25e0bb6d195f88ea2eaa04a2b9a15c5d 325 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 320 3.1E-86 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Alide_1005 25e0bb6d195f88ea2eaa04a2b9a15c5d 325 Gene3D G3DSA:2.40.100.10 186 323 9.6E-46 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_1005 25e0bb6d195f88ea2eaa04a2b9a15c5d 325 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 24 296 5.7E-84 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Alide_0987 b414682bc9b0e7fa449113c70a5ab9c3 661 Pfam PF00350 Dynamin family 58 259 1.6E-13 T 12-10-2018 IPR022812 Dynamin superfamily Alide_0987 b414682bc9b0e7fa449113c70a5ab9c3 661 Gene3D G3DSA:3.40.50.300 188 358 1.9E-12 T 12-10-2018 Alide_0987 b414682bc9b0e7fa449113c70a5ab9c3 661 Gene3D G3DSA:3.40.50.300 7 106 8.4E-7 T 12-10-2018 Alide_0987 b414682bc9b0e7fa449113c70a5ab9c3 661 SUPERFAMILY SSF52540 33 319 5.16E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0824 48c027a61712128aeb36a4613c275868 300 Gene3D G3DSA:1.10.10.10 3 90 3.4E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0824 48c027a61712128aeb36a4613c275868 300 SUPERFAMILY SSF53850 92 298 1.26E-45 T 12-10-2018 Alide_0824 48c027a61712128aeb36a4613c275868 300 Gene3D G3DSA:3.40.190.290 92 296 1.0E-49 T 12-10-2018 Alide_0824 48c027a61712128aeb36a4613c275868 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.2E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0824 48c027a61712128aeb36a4613c275868 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.2E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0824 48c027a61712128aeb36a4613c275868 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.2E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0824 48c027a61712128aeb36a4613c275868 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.1E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0824 48c027a61712128aeb36a4613c275868 300 Pfam PF03466 LysR substrate binding domain 89 292 3.8E-46 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0824 48c027a61712128aeb36a4613c275868 300 SUPERFAMILY SSF46785 4 87 2.13E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4204 d63e84fdbbdd347ff09e9c0c331c8eb6 156 SUPERFAMILY SSF54637 7 146 2.16E-32 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_4204 d63e84fdbbdd347ff09e9c0c331c8eb6 156 Gene3D G3DSA:3.10.129.10 4 155 1.7E-37 T 12-10-2018 Alide_4204 d63e84fdbbdd347ff09e9c0c331c8eb6 156 Pfam PF13452 N-terminal half of MaoC dehydratase 7 137 1.6E-36 T 12-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Alide_4204 d63e84fdbbdd347ff09e9c0c331c8eb6 156 PIRSF PIRSF018072 1 150 1.2E-41 T 12-10-2018 IPR016709 Uncharacterised protein family UPF0336 Alide_0976 011ed344f5d7a34d8433ee1824ce08c4 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 318 6.8E-20 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_0976 011ed344f5d7a34d8433ee1824ce08c4 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 299 9.7E-15 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_0976 011ed344f5d7a34d8433ee1824ce08c4 324 Gene3D G3DSA:3.40.50.300 1 323 7.1E-94 T 12-10-2018 Alide_0976 011ed344f5d7a34d8433ee1824ce08c4 324 Pfam PF00005 ABC transporter 24 180 2.2E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0976 011ed344f5d7a34d8433ee1824ce08c4 324 SMART SM00382 32 230 2.4E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0976 011ed344f5d7a34d8433ee1824ce08c4 324 SUPERFAMILY SSF52540 3 251 4.21E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0976 011ed344f5d7a34d8433ee1824ce08c4 324 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 Gene3D G3DSA:2.40.50.140 11 83 6.9E-20 T 12-10-2018 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 SUPERFAMILY SSF50249 610 690 1.95E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 SMART SM00955 196 528 1.9E-176 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 Pfam PF08206 Ribonuclease B OB domain 23 80 1.8E-22 T 12-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 TIGRFAM TIGR02063 RNase_R: ribonuclease R 12 532 2.1E-192 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 SUPERFAMILY SSF50249 74 173 4.71E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 SUPERFAMILY SSF50249 156 608 1.83E-138 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 Hamap MF_01895 Ribonuclease R [rnr]. 5 691 54.097 T 12-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 SMART SM00357 22 81 2.8E-12 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 Pfam PF00575 S1 RNA binding domain 610 688 4.7E-11 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 SMART SM00316 16 78 10.0 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 SMART SM00316 608 691 9.5E-13 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 SUPERFAMILY SSF50249 15 83 1.03E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 Gene3D G3DSA:2.40.50.140 611 722 3.2E-20 T 12-10-2018 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 ProSitePatterns PS01175 Ribonuclease II family signature. 495 519 - T 12-10-2018 IPR022966 Ribonuclease II/R, conserved site Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 16 691 3.1E-201 T 12-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 Alide_1933 d389dd8f7378cf1a85f4ab4ab5f6de22 763 Pfam PF00773 RNB domain 196 527 5.7E-104 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Alide_4607 42e02611a82c3abfa10911b6fe2fa062 160 Gene3D G3DSA:2.60.120.10 39 160 1.8E-35 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_4607 42e02611a82c3abfa10911b6fe2fa062 160 SUPERFAMILY SSF51182 65 155 2.06E-19 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_4607 42e02611a82c3abfa10911b6fe2fa062 160 Pfam PF07883 Cupin domain 78 147 6.9E-14 T 12-10-2018 IPR013096 Cupin 2, conserved barrel Alide_4079 4143026d0746862aa88969e2d060ea15 607 Gene3D G3DSA:3.30.450.20 55 267 1.9E-39 T 12-10-2018 Alide_4079 4143026d0746862aa88969e2d060ea15 607 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 408 561 7.1E-53 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_4079 4143026d0746862aa88969e2d060ea15 607 SMART SM00283 348 595 1.3E-88 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_4079 4143026d0746862aa88969e2d060ea15 607 SMART SM00304 293 347 1.7E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4079 4143026d0746862aa88969e2d060ea15 607 Gene3D G3DSA:1.10.287.950 293 597 8.6E-89 T 12-10-2018 Alide_4079 4143026d0746862aa88969e2d060ea15 607 Gene3D G3DSA:3.30.450.20 64 165 1.9E-39 T 12-10-2018 Alide_4079 4143026d0746862aa88969e2d060ea15 607 SUPERFAMILY SSF58104 315 596 6.93E-75 T 12-10-2018 Alide_4079 4143026d0746862aa88969e2d060ea15 607 SUPERFAMILY SSF103190 89 173 4.08E-8 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Alide_4079 4143026d0746862aa88969e2d060ea15 607 Pfam PF00672 HAMP domain 294 342 1.7E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4079 4143026d0746862aa88969e2d060ea15 607 Pfam PF02743 Cache domain 109 255 3.1E-21 T 12-10-2018 IPR033479 Double Cache domain 1 Alide_1813 482563040ec07babb75a41525d0098c2 533 ProSitePatterns PS00455 Putative AMP-binding domain signature. 177 188 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_1813 482563040ec07babb75a41525d0098c2 533 Pfam PF00501 AMP-binding enzyme 18 424 1.6E-74 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_1813 482563040ec07babb75a41525d0098c2 533 SUPERFAMILY SSF56801 9 520 2.22E-113 T 12-10-2018 Alide_1813 482563040ec07babb75a41525d0098c2 533 Gene3D G3DSA:3.30.300.30 418 521 7.2E-21 T 12-10-2018 Alide_1813 482563040ec07babb75a41525d0098c2 533 Pfam PF13193 AMP-binding enzyme C-terminal domain 433 510 1.4E-8 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1813 482563040ec07babb75a41525d0098c2 533 Gene3D G3DSA:3.40.50.12780 5 417 1.5E-82 T 12-10-2018 Alide_1890 6abbd45b5ed9ea2e8ab3de3e220fdc8b 338 Gene3D G3DSA:3.40.50.720 128 306 1.0E-118 T 12-10-2018 Alide_1890 6abbd45b5ed9ea2e8ab3de3e220fdc8b 338 SUPERFAMILY SSF51735 125 303 2.12E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1890 6abbd45b5ed9ea2e8ab3de3e220fdc8b 338 SMART SM00829 17 335 2.2E-6 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_1890 6abbd45b5ed9ea2e8ab3de3e220fdc8b 338 SUPERFAMILY SSF50129 3 169 1.07E-37 T 12-10-2018 IPR011032 GroES-like superfamily Alide_1890 6abbd45b5ed9ea2e8ab3de3e220fdc8b 338 Gene3D G3DSA:3.90.180.10 10 335 1.0E-118 T 12-10-2018 Alide_1890 6abbd45b5ed9ea2e8ab3de3e220fdc8b 338 Pfam PF16884 N-terminal domain of oxidoreductase 6 108 6.6E-37 T 12-10-2018 Alide_1890 6abbd45b5ed9ea2e8ab3de3e220fdc8b 338 Pfam PF00107 Zinc-binding dehydrogenase 160 295 7.7E-17 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_3932 aafcbf6705b1b3fecd87cedccca63ca7 380 PRINTS PR00184 Neisseria sp. porin signature 51 76 4.9E-5 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Alide_3932 aafcbf6705b1b3fecd87cedccca63ca7 380 PRINTS PR00184 Neisseria sp. porin signature 311 335 4.9E-5 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Alide_3932 aafcbf6705b1b3fecd87cedccca63ca7 380 Pfam PF13609 Gram-negative porin 8 340 8.0E-46 T 12-10-2018 Alide_3932 aafcbf6705b1b3fecd87cedccca63ca7 380 Gene3D G3DSA:2.40.160.10 20 380 7.4E-61 T 12-10-2018 IPR023614 Porin domain superfamily Alide_3932 aafcbf6705b1b3fecd87cedccca63ca7 380 SUPERFAMILY SSF56935 20 380 5.5E-48 T 12-10-2018 Alide_3318 821cac195b2a001988d10931e1ab85a4 415 TIGRFAM TIGR00277 HDIG: HDIG domain 156 247 3.5E-7 T 12-10-2018 IPR006675 HDIG domain Alide_3318 821cac195b2a001988d10931e1ab85a4 415 Pfam PF13487 HD domain 210 270 1.7E-10 T 12-10-2018 Alide_3318 821cac195b2a001988d10931e1ab85a4 415 SMART SM00471 153 288 5.5E-4 T 12-10-2018 IPR003607 HD/PDEase domain Alide_3318 821cac195b2a001988d10931e1ab85a4 415 Gene3D G3DSA:1.10.3210.10 18 320 8.7E-36 T 12-10-2018 Alide_3318 821cac195b2a001988d10931e1ab85a4 415 SUPERFAMILY SSF109604 151 318 1.23E-20 T 12-10-2018 Alide_3318 821cac195b2a001988d10931e1ab85a4 415 Pfam PF11871 Domain of unknown function (DUF3391) 1 121 1.7E-16 T 12-10-2018 IPR021812 Protein of unknown function DUF3391 Alide_4523 072ca21ec8657b946cc42bbf8b105bc9 607 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 157 311 8.5E-9 T 12-10-2018 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain Alide_4523 072ca21ec8657b946cc42bbf8b105bc9 607 Gene3D G3DSA:3.40.50.300 380 606 5.9E-26 T 12-10-2018 Alide_4523 072ca21ec8657b946cc42bbf8b105bc9 607 Gene3D G3DSA:3.40.50.300 116 283 4.3E-11 T 12-10-2018 Alide_4523 072ca21ec8657b946cc42bbf8b105bc9 607 SUPERFAMILY SSF52540 139 597 1.85E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4523 072ca21ec8657b946cc42bbf8b105bc9 607 Pfam PF12696 TraM recognition site of TraD and TraG 459 585 1.2E-13 T 12-10-2018 IPR032689 TraD/TraG, TraM recognition site Alide_4523 072ca21ec8657b946cc42bbf8b105bc9 607 TIGRFAM TIGR03743 SXT_TraD: conjugative coupling factor TraD, SXT/TOL subfamily 130 606 1.3E-164 T 12-10-2018 IPR022458 Conjugative coupling factor TraG/TraD Alide_0232 1170b1678439d087147e3ec077656b77 151 SUPERFAMILY SSF46955 1 118 5.13E-35 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_0232 1170b1678439d087147e3ec077656b77 151 Pfam PF13411 MerR HTH family regulatory protein 1 68 3.1E-20 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_0232 1170b1678439d087147e3ec077656b77 151 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 1 127 1.6E-55 T 12-10-2018 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 Alide_0232 1170b1678439d087147e3ec077656b77 151 Gene3D G3DSA:1.10.1660.10 1 126 1.6E-35 T 12-10-2018 Alide_0232 1170b1678439d087147e3ec077656b77 151 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 8.0E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_0232 1170b1678439d087147e3ec077656b77 151 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 8.0E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_0232 1170b1678439d087147e3ec077656b77 151 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 8.0E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_0232 1170b1678439d087147e3ec077656b77 151 SMART SM00422 1 70 4.5E-29 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_2769 37dd68e1298e658a52bcf6e7a46c26d9 477 Pfam PF01979 Amidohydrolase family 67 449 2.8E-32 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_2769 37dd68e1298e658a52bcf6e7a46c26d9 477 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 22 473 3.1E-177 T 12-10-2018 IPR010252 Formiminoglutamate deiminase Alide_2769 37dd68e1298e658a52bcf6e7a46c26d9 477 Gene3D G3DSA:2.30.40.10 27 455 3.2E-177 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Alide_2769 37dd68e1298e658a52bcf6e7a46c26d9 477 SUPERFAMILY SSF51556 69 396 4.68E-72 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_2769 37dd68e1298e658a52bcf6e7a46c26d9 477 Gene3D G3DSA:3.20.20.140 71 467 3.2E-177 T 12-10-2018 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 SUPERFAMILY SSF140990 426 618 6.93E-63 T 12-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 SMART SM00382 207 347 6.2E-25 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 Gene3D G3DSA:1.20.58.760 426 624 2.3E-67 T 12-10-2018 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 ProSitePatterns PS00674 AAA-protein family signature. 315 333 - T 12-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 Pfam PF01434 Peptidase family M41 406 613 2.1E-66 T 12-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 211 344 3.9E-43 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 123 614 3.5E-204 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 Gene3D G3DSA:1.10.8.60 347 423 1.7E-27 T 12-10-2018 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 23 621 35.043 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 Gene3D G3DSA:3.40.50.300 160 346 6.4E-67 T 12-10-2018 Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 SUPERFAMILY SSF52540 169 415 2.44E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3945 b46c230b3d62bb8cda4b9f8696f7b836 626 Pfam PF06480 FtsH Extracellular 27 77 1.1E-5 T 12-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 Alide_3757 34db31b32bcdfc461462e6c200a8a49d 140 Pfam PF03061 Thioesterase superfamily 47 119 2.7E-13 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_3757 34db31b32bcdfc461462e6c200a8a49d 140 SUPERFAMILY SSF54637 7 131 2.04E-29 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_3757 34db31b32bcdfc461462e6c200a8a49d 140 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 22 132 6.2E-21 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_3757 34db31b32bcdfc461462e6c200a8a49d 140 Gene3D G3DSA:3.10.129.10 4 136 2.3E-33 T 12-10-2018 Alide_4056 edb79f7a6af28fe33acd5262487a976f 226 PIRSF PIRSF001461 1 226 6.3E-99 T 12-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Alide_4056 edb79f7a6af28fe33acd5262487a976f 226 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 34 48 - T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Alide_4056 edb79f7a6af28fe33acd5262487a976f 226 SUPERFAMILY SSF51366 4 223 7.33E-72 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Alide_4056 edb79f7a6af28fe33acd5262487a976f 226 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 142 164 - T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Alide_4056 edb79f7a6af28fe33acd5262487a976f 226 Gene3D G3DSA:3.20.20.70 5 226 4.9E-81 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_4056 edb79f7a6af28fe33acd5262487a976f 226 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 7 222 5.9E-92 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Alide_4056 edb79f7a6af28fe33acd5262487a976f 226 Pfam PF00834 Ribulose-phosphate 3 epimerase family 7 209 1.7E-84 T 12-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Alide_1585 6a462ea45bf60a53960008c3b98d0a62 182 Gene3D G3DSA:3.30.1060.10 1 169 1.2E-71 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Alide_1585 6a462ea45bf60a53960008c3b98d0a62 182 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 5 164 37.513 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Alide_1585 6a462ea45bf60a53960008c3b98d0a62 182 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 7 159 2.4E-60 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Alide_1585 6a462ea45bf60a53960008c3b98d0a62 182 SUPERFAMILY SSF55068 3 171 1.44E-73 T 12-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Alide_1585 6a462ea45bf60a53960008c3b98d0a62 182 Pfam PF01625 Peptide methionine sulfoxide reductase 7 159 8.0E-66 T 12-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Alide_3234 d5a29a683b68694fee046dae14425585 333 SUPERFAMILY SSF51430 1 311 9.04E-97 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Alide_3234 d5a29a683b68694fee046dae14425585 333 Gene3D G3DSA:3.20.20.100 1 323 1.2E-108 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Alide_3234 d5a29a683b68694fee046dae14425585 333 PRINTS PR00069 Aldo-keto reductase signature 39 63 2.3E-5 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Alide_3234 d5a29a683b68694fee046dae14425585 333 PRINTS PR00069 Aldo-keto reductase signature 103 121 2.3E-5 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Alide_3234 d5a29a683b68694fee046dae14425585 333 PRINTS PR00069 Aldo-keto reductase signature 134 151 2.3E-5 T 12-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Alide_3234 d5a29a683b68694fee046dae14425585 333 Pfam PF00248 Aldo/keto reductase family 16 309 3.1E-67 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain Alide_2426 0bc9a16baac5d0dd7d906057d935af24 463 Gene3D G3DSA:1.10.3210.10 28 304 4.5E-30 T 12-10-2018 Alide_2426 0bc9a16baac5d0dd7d906057d935af24 463 Pfam PF13487 HD domain 207 256 9.2E-10 T 12-10-2018 Alide_2426 0bc9a16baac5d0dd7d906057d935af24 463 SUPERFAMILY SSF109604 140 269 2.66E-11 T 12-10-2018 Alide_1056 78b59a6498d1a349b4156165eedc52de 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 1 102 20.156 T 12-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 Alide_1056 78b59a6498d1a349b4156165eedc52de 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 9 97 4.3E-21 T 12-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 Hamap MF_01201 Alanine racemase. 2 364 31.954 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 SUPERFAMILY SSF51419 9 236 6.11E-59 T 12-10-2018 IPR029066 PLP-binding barrel Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 SMART SM01005 235 364 3.0E-60 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 Gene3D G3DSA:3.20.20.10 11 218 1.5E-106 T 12-10-2018 IPR029066 PLP-binding barrel Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 Pfam PF00842 Alanine racemase, C-terminal domain 235 360 4.0E-40 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 Pfam PF01168 Alanine racemase, N-terminal domain 9 220 9.9E-65 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 PRINTS PR00992 Alanine racemase signature 268 283 5.5E-59 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 PRINTS PR00992 Alanine racemase signature 289 306 5.5E-59 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 PRINTS PR00992 Alanine racemase signature 155 166 5.5E-59 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 PRINTS PR00992 Alanine racemase signature 121 133 5.5E-59 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 PRINTS PR00992 Alanine racemase signature 346 359 5.5E-59 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 PRINTS PR00992 Alanine racemase signature 27 43 5.5E-59 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 PRINTS PR00992 Alanine racemase signature 251 266 5.5E-59 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 PRINTS PR00992 Alanine racemase signature 61 79 5.5E-59 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 PRINTS PR00992 Alanine racemase signature 193 220 5.5E-59 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 TIGRFAM TIGR00492 alr: alanine racemase 5 361 9.9E-101 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 Gene3D G3DSA:2.40.37.10 9 359 1.5E-106 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 SUPERFAMILY SSF50621 228 360 3.1E-44 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Alide_0290 b11b643c6d27c503b7589c807db0bfc0 364 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 12-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 Pfam PF09278 MerR, DNA binding 51 113 1.9E-18 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 ProSitePatterns PS00552 MerR-type HTH domain signature. 11 33 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 Gene3D G3DSA:1.10.1660.10 1 130 2.6E-32 T 12-10-2018 Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 Pfam PF00376 MerR family regulatory protein 9 46 9.5E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 4.7E-25 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 4.7E-25 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 4.7E-25 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 SUPERFAMILY SSF46955 8 129 2.53E-29 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 SMART SM00422 8 77 4.9E-29 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4503 079b42ed1f87aefba89b146ca8bc13ff 144 TIGRFAM TIGR02051 MerR: Hg(II)-responsive transcriptional regulator 9 132 5.4E-55 T 12-10-2018 IPR011794 Hg(II)-responsive transcriptional regulator GO:0003677|GO:0006355|GO:0045340|GO:0046689 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 Pfam PF08335 GlnD PII-uridylyltransferase 178 322 2.1E-28 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 874 316.519 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 SUPERFAMILY SSF55021 693 757 5.83E-9 T 12-10-2018 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 SUPERFAMILY SSF55021 802 854 3.16E-9 T 12-10-2018 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 41 871 1.2E-233 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 Gene3D G3DSA:1.10.3210.10 443 570 9.6E-12 T 12-10-2018 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 SUPERFAMILY SSF109604 425 549 8.63E-16 T 12-10-2018 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 PIRSF PIRSF006288 8 874 3.2E-289 T 12-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 SUPERFAMILY SSF81301 16 170 1.44E-22 T 12-10-2018 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 Pfam PF01966 HD domain 459 587 1.3E-9 T 12-10-2018 IPR006674 HD domain Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 Gene3D G3DSA:3.30.70.260 800 874 1.4E-8 T 12-10-2018 Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 SMART SM00471 454 601 2.2E-6 T 12-10-2018 IPR003607 HD/PDEase domain Alide_2613 72f2fcb4fdba1734925ddc1994ddca20 874 SUPERFAMILY SSF81593 180 289 8.63E-7 T 12-10-2018 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 220 2.5E-22 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 PIRSF PIRSF016578 1 196 3.8E-11 T 12-10-2018 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 PIRSF PIRSF016578 242 387 4.9E-6 T 12-10-2018 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 Gene3D G3DSA:1.20.140.10 238 381 6.7E-38 T 12-10-2018 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 SUPERFAMILY SSF47203 233 386 5.96E-44 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 Gene3D G3DSA:2.40.110.10 122 237 2.4E-31 T 12-10-2018 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 Gene3D G3DSA:1.10.540.10 1 117 9.3E-28 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 SUPERFAMILY SSF56645 6 232 3.8E-59 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 379 3.3E-33 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 340 359 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2930 bb83bcdbddca182575d6e5b4726ace52 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 117 1.0E-23 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0742 89eab2e51b988339db48e28f5b76a5b2 348 SUPERFAMILY SSF55729 155 315 2.01E-34 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_0742 89eab2e51b988339db48e28f5b76a5b2 348 Pfam PF13480 Acetyltransferase (GNAT) domain 174 281 9.2E-14 T 12-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Alide_0742 89eab2e51b988339db48e28f5b76a5b2 348 TIGRFAM TIGR03019 pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated 17 348 1.7E-154 T 12-10-2018 IPR017469 PEP-CTERM system-associated, FemAB-related Alide_0742 89eab2e51b988339db48e28f5b76a5b2 348 Gene3D G3DSA:3.40.630.30 142 295 1.9E-21 T 12-10-2018 Alide_4334 94847eb6ecf53ab6b773689784594654 325 SUPERFAMILY SSF143631 16 313 4.01E-86 T 12-10-2018 IPR003374 ApbE-like superfamily Alide_4334 94847eb6ecf53ab6b773689784594654 325 PIRSF PIRSF006268 3 321 3.5E-75 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Alide_4334 94847eb6ecf53ab6b773689784594654 325 Gene3D G3DSA:3.10.520.20 13 323 5.0E-100 T 12-10-2018 Alide_4334 94847eb6ecf53ab6b773689784594654 325 Pfam PF02424 ApbE family 22 305 5.4E-75 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Alide_0696 869e136a6b07d7b6a8bef6f0067d14c0 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 219 6.2E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0696 869e136a6b07d7b6a8bef6f0067d14c0 223 Gene3D G3DSA:1.10.3720.10 12 220 8.6E-45 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0696 869e136a6b07d7b6a8bef6f0067d14c0 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 18 114 1.4E-23 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_0696 869e136a6b07d7b6a8bef6f0067d14c0 223 SUPERFAMILY SSF161098 17 212 4.84E-40 T 12-10-2018 IPR035906 MetI-like superfamily Alide_3327 b9585a0f0f45965d799b7cdabf00b305 210 SUPERFAMILY SSF46626 24 203 1.11E-29 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3327 b9585a0f0f45965d799b7cdabf00b305 210 Gene3D G3DSA:1.10.760.10 51 210 1.1E-74 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3327 b9585a0f0f45965d799b7cdabf00b305 210 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 14 207 1.2E-87 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Alide_3327 b9585a0f0f45965d799b7cdabf00b305 210 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 17 190 1.6E-90 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Alide_1269 12a3276a75b5165a648df5ee617ab720 312 PIRSF PIRSF020481 185 312 1.2E-17 T 12-10-2018 IPR014507 Baseplate assembly protein J, predicted Alide_1269 12a3276a75b5165a648df5ee617ab720 312 PIRSF PIRSF020481 1 170 8.1E-39 T 12-10-2018 IPR014507 Baseplate assembly protein J, predicted Alide_1269 12a3276a75b5165a648df5ee617ab720 312 Pfam PF04865 Baseplate J-like protein 98 260 4.2E-12 T 12-10-2018 IPR006949 Baseplate protein J-like Alide_4294 6eba91f1c951cb1a1da609b534826275 382 Gene3D G3DSA:1.20.140.10 225 381 9.4E-54 T 12-10-2018 Alide_4294 6eba91f1c951cb1a1da609b534826275 382 SUPERFAMILY SSF56645 1 224 1.57E-72 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_4294 6eba91f1c951cb1a1da609b534826275 382 SUPERFAMILY SSF47203 222 378 1.03E-54 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_4294 6eba91f1c951cb1a1da609b534826275 382 Gene3D G3DSA:1.10.540.10 1 117 2.1E-33 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_4294 6eba91f1c951cb1a1da609b534826275 382 PIRSF PIRSF016578 3 380 1.5E-28 T 12-10-2018 Alide_4294 6eba91f1c951cb1a1da609b534826275 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 223 374 5.5E-48 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_4294 6eba91f1c951cb1a1da609b534826275 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 214 1.5E-25 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_4294 6eba91f1c951cb1a1da609b534826275 382 Gene3D G3DSA:2.40.110.10 119 224 3.3E-37 T 12-10-2018 Alide_4294 6eba91f1c951cb1a1da609b534826275 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 116 8.7E-28 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0782 352efd77099bcd6af8ca52de8432b4e8 726 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 10 722 8.1E-242 T 12-10-2018 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 Alide_0782 352efd77099bcd6af8ca52de8432b4e8 726 Gene3D G3DSA:3.40.1190.10 481 722 1.4E-7 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_0782 352efd77099bcd6af8ca52de8432b4e8 726 SUPERFAMILY SSF56059 220 478 1.33E-29 T 12-10-2018 Alide_0782 352efd77099bcd6af8ca52de8432b4e8 726 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 220 306 1.2E-8 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_0782 352efd77099bcd6af8ca52de8432b4e8 726 Gene3D G3DSA:3.30.470.20 382 473 9.2E-7 T 12-10-2018 Alide_0782 352efd77099bcd6af8ca52de8432b4e8 726 Gene3D G3DSA:3.30.470.20 211 333 1.1E-18 T 12-10-2018 Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 18 136 1.4E-16 T 12-10-2018 IPR000014 PAS domain Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 263 3.0E-10 T 12-10-2018 IPR000014 PAS domain Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 Gene3D G3DSA:3.30.450.20 16 139 1.2E-24 T 12-10-2018 Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 Gene3D G3DSA:3.30.450.20 140 264 4.6E-20 T 12-10-2018 Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 Pfam PF08448 PAS fold 149 258 3.8E-18 T 12-10-2018 IPR013656 PAS fold-4 Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 Pfam PF08448 PAS fold 22 133 4.2E-16 T 12-10-2018 IPR013656 PAS fold-4 Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 Pfam PF00990 Diguanylate cyclase, GGDEF domain 267 423 3.3E-44 T 12-10-2018 IPR000160 GGDEF domain Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 SUPERFAMILY SSF55785 128 254 6.0E-23 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 SUPERFAMILY SSF55785 21 133 4.54E-20 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 SUPERFAMILY SSF55073 272 427 1.33E-49 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 263 426 3.6E-48 T 12-10-2018 IPR000160 GGDEF domain Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 SMART SM00267 256 428 9.1E-61 T 12-10-2018 IPR000160 GGDEF domain Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 Gene3D G3DSA:3.30.70.270 265 428 7.2E-57 T 12-10-2018 Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 SMART SM00091 143 209 2.3E-5 T 12-10-2018 IPR000014 PAS domain Alide_0868 1c3400190ca2913f96dc9589cc273d49 431 SMART SM00091 16 82 8.6E-6 T 12-10-2018 IPR000014 PAS domain Alide_3088 eee743e93513907ca6785b31277ecaae 277 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 18 269 6.7E-78 T 12-10-2018 IPR014308 Xanthine dehydrogenase accessory protein XdhC Alide_3088 eee743e93513907ca6785b31277ecaae 277 Pfam PF13478 XdhC Rossmann domain 122 268 3.5E-34 T 12-10-2018 IPR027051 XdhC Rossmann domain Alide_3088 eee743e93513907ca6785b31277ecaae 277 Pfam PF02625 XdhC and CoxI family 14 73 2.4E-12 T 12-10-2018 IPR003777 XdhC- CoxI Alide_3088 eee743e93513907ca6785b31277ecaae 277 Gene3D G3DSA:3.40.50.720 122 272 7.6E-32 T 12-10-2018 Alide_4021 0244a8ec6a0733e332994236726d7b77 119 Pfam PF11190 Protein of unknown function (DUF2976) 32 118 1.5E-32 T 12-10-2018 IPR021356 Integrating conjugative element protein PFL4702 Alide_4021 0244a8ec6a0733e332994236726d7b77 119 TIGRFAM TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family 16 119 1.5E-44 T 12-10-2018 IPR021356 Integrating conjugative element protein PFL4702 Alide_0132 ef8991a0d66f578f9f9aa96aacdf4729 316 Gene3D G3DSA:3.40.190.10 121 241 8.7E-108 T 12-10-2018 Alide_0132 ef8991a0d66f578f9f9aa96aacdf4729 316 SUPERFAMILY SSF53850 25 269 3.55E-14 T 12-10-2018 Alide_0132 ef8991a0d66f578f9f9aa96aacdf4729 316 PIRSF PIRSF017082 2 316 3.5E-90 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0132 ef8991a0d66f578f9f9aa96aacdf4729 316 Gene3D G3DSA:3.40.190.150 24 306 8.7E-108 T 12-10-2018 Alide_0132 ef8991a0d66f578f9f9aa96aacdf4729 316 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 44 312 3.0E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3843 c1d7989e17dd07505ddaad277530dc5b 373 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 277 363 1.4E-9 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3843 c1d7989e17dd07505ddaad277530dc5b 373 SMART SM00387 270 364 1.1E-6 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3843 c1d7989e17dd07505ddaad277530dc5b 373 SUPERFAMILY SSF55874 236 362 2.49E-18 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3843 c1d7989e17dd07505ddaad277530dc5b 373 Gene3D G3DSA:3.30.565.10 232 367 1.7E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3843 c1d7989e17dd07505ddaad277530dc5b 373 SUPERFAMILY SSF52172 14 153 8.54E-21 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3843 c1d7989e17dd07505ddaad277530dc5b 373 Gene3D G3DSA:3.40.50.2300 15 169 4.1E-18 T 12-10-2018 Alide_3843 c1d7989e17dd07505ddaad277530dc5b 373 SMART SM00448 15 131 1.6E-7 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3843 c1d7989e17dd07505ddaad277530dc5b 373 Pfam PF00072 Response regulator receiver domain 18 124 3.9E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3843 c1d7989e17dd07505ddaad277530dc5b 373 Pfam PF07730 Histidine kinase 168 233 1.9E-10 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Alide_2735 0d0d79f9abc8a1c2323c609ae068a61f 92 Pfam PF11666 Protein of unknown function (DUF2933) 27 76 9.9E-24 T 12-10-2018 IPR021682 Protein of unknown function DUF2933 Alide_3394 cf073819f0f101a8cba9db53cc46398d 409 Gene3D G3DSA:3.30.1540.10 251 341 1.8E-112 T 12-10-2018 Alide_3394 cf073819f0f101a8cba9db53cc46398d 409 SUPERFAMILY SSF89796 18 409 4.06E-114 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3394 cf073819f0f101a8cba9db53cc46398d 409 Gene3D G3DSA:3.40.50.10540 20 403 1.8E-112 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3394 cf073819f0f101a8cba9db53cc46398d 409 Pfam PF02515 CoA-transferase family III 21 386 2.4E-115 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0434 aa80818189c197e305adea4eb4bc775c 82 SUPERFAMILY SSF81333 3 78 1.44E-19 T 12-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Alide_0434 aa80818189c197e305adea4eb4bc775c 82 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.9E-6 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0434 aa80818189c197e305adea4eb4bc775c 82 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.9E-6 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0434 aa80818189c197e305adea4eb4bc775c 82 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.9E-6 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0434 aa80818189c197e305adea4eb4bc775c 82 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 14.176 T 12-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0434 aa80818189c197e305adea4eb4bc775c 82 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 2.1E-24 T 12-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Alide_0434 aa80818189c197e305adea4eb4bc775c 82 Pfam PF00137 ATP synthase subunit C 10 72 6.5E-12 T 12-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Alide_0434 aa80818189c197e305adea4eb4bc775c 82 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 12-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0434 aa80818189c197e305adea4eb4bc775c 82 Gene3D G3DSA:1.20.20.10 1 77 1.7E-27 T 12-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 SUPERFAMILY SSF47203 228 383 1.37E-60 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 Gene3D G3DSA:1.10.540.10 1 119 2.7E-32 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 PIRSF PIRSF016578 3 195 4.5E-9 T 12-10-2018 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 PIRSF PIRSF016578 210 387 9.7E-15 T 12-10-2018 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 Gene3D G3DSA:1.20.140.10 234 382 1.4E-55 T 12-10-2018 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 379 9.9E-49 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 116 1.4E-25 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 Gene3D G3DSA:2.40.110.10 120 233 3.4E-43 T 12-10-2018 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 217 2.9E-24 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2557 536ac44787becaaeb24b0bb46b41a551 388 SUPERFAMILY SSF56645 1 242 3.8E-78 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0088 5b3b7fce813fe521a64f71b182583aa5 422 SUPERFAMILY SSF51905 13 406 1.21E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0088 5b3b7fce813fe521a64f71b182583aa5 422 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 13 412 2.2E-104 T 12-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 Alide_0088 5b3b7fce813fe521a64f71b182583aa5 422 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 172 187 4.3E-14 T 12-10-2018 Alide_0088 5b3b7fce813fe521a64f71b182583aa5 422 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 317 333 4.3E-14 T 12-10-2018 Alide_0088 5b3b7fce813fe521a64f71b182583aa5 422 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 13 35 4.3E-14 T 12-10-2018 Alide_0088 5b3b7fce813fe521a64f71b182583aa5 422 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 317 4.3E-14 T 12-10-2018 Alide_0088 5b3b7fce813fe521a64f71b182583aa5 422 Pfam PF01494 FAD binding domain 12 368 2.5E-24 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 Alide_0088 5b3b7fce813fe521a64f71b182583aa5 422 Gene3D G3DSA:3.50.50.60 13 359 2.3E-84 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0088 5b3b7fce813fe521a64f71b182583aa5 422 Gene3D G3DSA:3.30.9.50 87 291 2.3E-84 T 12-10-2018 Alide_3836 7e229f5b27df659943646033377046ab 369 SMART SM00448 5 124 2.2E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3836 7e229f5b27df659943646033377046ab 369 PIRSF PIRSF000876 2 363 6.2E-133 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Alide_3836 7e229f5b27df659943646033377046ab 369 SUPERFAMILY SSF52172 4 109 2.13E-28 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3836 7e229f5b27df659943646033377046ab 369 Pfam PF00072 Response regulator receiver domain 7 109 1.2E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3836 7e229f5b27df659943646033377046ab 369 SUPERFAMILY SSF52738 172 360 1.02E-70 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal Alide_3836 7e229f5b27df659943646033377046ab 369 Gene3D G3DSA:3.40.50.180 167 364 4.8E-75 T 12-10-2018 IPR035909 Methylesterase CheB, C-terminal Alide_3836 7e229f5b27df659943646033377046ab 369 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 5 359 40.453 T 12-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Alide_3836 7e229f5b27df659943646033377046ab 369 Pfam PF01339 CheB methylesterase 176 354 2.9E-58 T 12-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Alide_3836 7e229f5b27df659943646033377046ab 369 Gene3D G3DSA:3.40.50.2300 3 133 5.5E-31 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 Gene3D G3DSA:3.30.2090.10 710 798 3.7E-282 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 SUPERFAMILY SSF82693 561 657 3.4E-11 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 PRINTS PR00702 Acriflavin resistance protein family signature 548 565 5.8E-76 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 5.8E-76 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 5.8E-76 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 PRINTS PR00702 Acriflavin resistance protein family signature 362 383 5.8E-76 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 PRINTS PR00702 Acriflavin resistance protein family signature 443 466 5.8E-76 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 PRINTS PR00702 Acriflavin resistance protein family signature 615 629 5.8E-76 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 PRINTS PR00702 Acriflavin resistance protein family signature 468 491 5.8E-76 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 PRINTS PR00702 Acriflavin resistance protein family signature 390 414 5.8E-76 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 PRINTS PR00702 Acriflavin resistance protein family signature 335 358 5.8E-76 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 SUPERFAMILY SSF82693 670 836 1.15E-10 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 SUPERFAMILY SSF82866 822 1021 3.92E-42 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 Gene3D G3DSA:3.30.2090.10 179 269 3.7E-282 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 Gene3D G3DSA:1.20.1640.10 509 1018 3.7E-282 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 Gene3D G3DSA:3.30.70.1430 563 657 3.7E-282 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 SUPERFAMILY SSF82693 40 133 2.62E-22 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 SUPERFAMILY SSF82866 295 496 4.71E-47 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 Gene3D G3DSA:3.30.70.1430 40 806 3.7E-282 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 SUPERFAMILY SSF82714 711 795 4.05E-19 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 Gene3D G3DSA:3.30.70.1440 658 860 3.7E-282 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 SUPERFAMILY SSF82693 136 329 4.19E-20 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 Gene3D G3DSA:1.20.1640.10 10 508 3.7E-282 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 Gene3D G3DSA:3.30.70.1320 133 331 3.7E-282 T 12-10-2018 Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 SUPERFAMILY SSF82714 183 265 4.05E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3060 986f2dfff91e463cf4c08bedb701bbfc 1038 Pfam PF00873 AcrB/AcrD/AcrF family 4 1021 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0397 7e052ac71d6d78d0eed183c72d6ff030 170 Gene3D G3DSA:1.10.10.10 22 166 2.9E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0397 7e052ac71d6d78d0eed183c72d6ff030 170 SUPERFAMILY SSF46785 21 163 9.59E-36 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0397 7e052ac71d6d78d0eed183c72d6ff030 170 Pfam PF12802 MarR family 55 113 1.2E-11 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_0397 7e052ac71d6d78d0eed183c72d6ff030 170 SMART SM00347 50 150 4.0E-23 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_4425 646accd6322bf76a42f4b784f149eb31 129 PIRSF PIRSF017849 1 129 1.7E-54 T 12-10-2018 IPR016703 Conjugal transfer, TraD, beta/gamma-type Alide_0416 f252d0950ea7a8431ee9a8d387fd70a2 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 2 110 24.617 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0416 f252d0950ea7a8431ee9a8d387fd70a2 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 84 108 - T 12-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0416 f252d0950ea7a8431ee9a8d387fd70a2 110 Pfam PF00237 Ribosomal protein L22p/L17e 7 108 3.6E-36 T 12-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Alide_0416 f252d0950ea7a8431ee9a8d387fd70a2 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 6 108 6.8E-45 T 12-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0416 f252d0950ea7a8431ee9a8d387fd70a2 110 Gene3D G3DSA:3.90.470.10 1 110 8.6E-43 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Alide_0416 f252d0950ea7a8431ee9a8d387fd70a2 110 SUPERFAMILY SSF54843 4 109 3.4E-39 T 12-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Alide_0689 16a04bd1bf5de00774e468c59c9074ac 445 SUPERFAMILY SSF101386 1 105 2.62E-32 T 12-10-2018 Alide_0689 16a04bd1bf5de00774e468c59c9074ac 445 Pfam PF12643 MazG-like family 33 104 2.0E-15 T 12-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 Alide_0689 16a04bd1bf5de00774e468c59c9074ac 445 Gene3D G3DSA:1.10.287.1080 1 106 4.4E-34 T 12-10-2018 Alide_0093 ab185d63cd963d0a7669f862ba9c1ae2 341 Gene3D G3DSA:1.10.540.10 1 105 6.3E-14 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0093 ab185d63cd963d0a7669f862ba9c1ae2 341 Gene3D G3DSA:1.20.140.10 183 324 4.4E-27 T 12-10-2018 Alide_0093 ab185d63cd963d0a7669f862ba9c1ae2 341 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 188 310 3.9E-18 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0093 ab185d63cd963d0a7669f862ba9c1ae2 341 SUPERFAMILY SSF56645 4 89 8.32E-8 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0093 ab185d63cd963d0a7669f862ba9c1ae2 341 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 92 1.0E-5 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0093 ab185d63cd963d0a7669f862ba9c1ae2 341 SUPERFAMILY SSF47203 188 322 4.99E-29 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_1108 e124ee0b8614bef6a554c07b9c1029d9 152 SUPERFAMILY SSF55298 1 151 2.83E-50 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Alide_1108 e124ee0b8614bef6a554c07b9c1029d9 152 Gene3D G3DSA:3.30.1330.40 1 152 8.2E-56 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Alide_1108 e124ee0b8614bef6a554c07b9c1029d9 152 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 9 151 8.7E-26 T 12-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Alide_3691 0be8d99388a8bd3f675e9dac0dac000a 615 Gene3D G3DSA:3.20.20.540 205 518 5.4E-152 T 12-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Alide_3691 0be8d99388a8bd3f675e9dac0dac000a 615 Pfam PF13667 ThiC-associated domain 17 85 1.5E-23 T 12-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Alide_3691 0be8d99388a8bd3f675e9dac0dac000a 615 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 130 587 98.834 T 12-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Alide_3691 0be8d99388a8bd3f675e9dac0dac000a 615 Pfam PF01964 Radical SAM ThiC family 131 583 2.7E-200 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Alide_3691 0be8d99388a8bd3f675e9dac0dac000a 615 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 130 585 4.1E-214 T 12-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Alide_3200 998845a58e18596805af3ddaddd15db0 520 Gene3D G3DSA:3.30.450.20 17 143 2.9E-25 T 12-10-2018 Alide_3200 998845a58e18596805af3ddaddd15db0 520 Pfam PF08447 PAS fold 31 114 2.0E-14 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 Alide_3200 998845a58e18596805af3ddaddd15db0 520 Gene3D G3DSA:1.10.287.950 217 520 8.7E-73 T 12-10-2018 Alide_3200 998845a58e18596805af3ddaddd15db0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 427 9.0E-45 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3200 998845a58e18596805af3ddaddd15db0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 446 475 9.0E-45 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3200 998845a58e18596805af3ddaddd15db0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 369 396 9.0E-45 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3200 998845a58e18596805af3ddaddd15db0 520 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 292 321 9.0E-45 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3200 998845a58e18596805af3ddaddd15db0 520 SUPERFAMILY SSF58104 242 518 4.71E-61 T 12-10-2018 Alide_3200 998845a58e18596805af3ddaddd15db0 520 SMART SM00086 80 121 1.6E-4 T 12-10-2018 IPR001610 PAC motif Alide_3200 998845a58e18596805af3ddaddd15db0 520 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 114 1.3E-12 T 12-10-2018 IPR000014 PAS domain Alide_3200 998845a58e18596805af3ddaddd15db0 520 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 332 485 2.7E-42 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3200 998845a58e18596805af3ddaddd15db0 520 SUPERFAMILY SSF55785 21 114 1.55E-25 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3200 998845a58e18596805af3ddaddd15db0 520 SMART SM00283 271 518 1.3E-66 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 Gene3D G3DSA:3.30.460.10 1 125 1.6E-27 T 12-10-2018 Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 SUPERFAMILY SSF81301 1 123 3.16E-29 T 12-10-2018 Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 Gene3D G3DSA:1.10.3090.10 126 410 3.5E-40 T 12-10-2018 Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 PIRSF PIRSF000813 1 414 1.1E-185 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 Pfam PF01743 Poly A polymerase head domain 3 126 7.1E-18 T 12-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 151 213 5.3E-12 T 12-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 Pfam PF01966 HD domain 233 331 2.7E-8 T 12-10-2018 IPR006674 HD domain Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 SUPERFAMILY SSF81891 124 361 3.66E-53 T 12-10-2018 Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 413 51.884 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Alide_0603 8e4ccc64e1c9d712cba3a72eac110579 415 Hamap MF_01262 CCA-adding enzyme [cca]. 1 407 38.996 T 12-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Gene3D G3DSA:2.40.50.140 6 97 3.6E-15 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Pfam PF00575 S1 RNA binding domain 363 434 4.8E-19 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Pfam PF00575 S1 RNA binding domain 276 347 2.8E-20 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Pfam PF00575 S1 RNA binding domain 450 520 8.9E-17 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Pfam PF00575 S1 RNA binding domain 103 171 1.9E-9 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Pfam PF00575 S1 RNA binding domain 189 260 2.5E-21 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Pfam PF00575 S1 RNA binding domain 19 85 5.5E-6 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Gene3D G3DSA:2.40.50.140 187 268 5.6E-27 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SMART SM00316 19 87 0.0018 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SMART SM00316 362 434 2.0E-21 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SMART SM00316 103 171 7.1E-6 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SMART SM00316 190 260 3.8E-28 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SMART SM00316 449 520 9.4E-20 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SMART SM00316 275 347 2.0E-24 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SUPERFAMILY SSF50249 343 440 2.47E-22 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PIRSF PIRSF002111 1 534 7.7E-209 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Gene3D G3DSA:2.40.50.140 445 528 1.4E-19 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.8E-78 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.8E-78 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.8E-78 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.8E-78 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.8E-78 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.8E-78 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.8E-78 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.8E-78 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.8E-78 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SUPERFAMILY SSF50249 255 358 1.04E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SUPERFAMILY SSF50249 449 531 1.42E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Gene3D G3DSA:2.40.50.140 269 357 9.4E-28 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Gene3D G3DSA:2.40.50.140 98 181 5.6E-7 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 Gene3D G3DSA:2.40.50.140 358 444 1.0E-23 T 12-10-2018 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SUPERFAMILY SSF50249 2 111 4.19E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 2.6E-200 T 12-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SUPERFAMILY SSF50249 103 184 3.67E-13 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1850 34f0e4b08225e3b6b93eb5970d583ac2 561 SUPERFAMILY SSF50249 189 276 3.5E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1004 9c8cc889dc1e1851c7a3aa7294c38242 227 SUPERFAMILY SSF160467 17 103 3.14E-9 T 12-10-2018 Alide_1004 9c8cc889dc1e1851c7a3aa7294c38242 227 SMART SM00796 14 212 6.0E-84 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Alide_1004 9c8cc889dc1e1851c7a3aa7294c38242 227 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 16 212 6.9E-65 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Alide_1004 9c8cc889dc1e1851c7a3aa7294c38242 227 Gene3D G3DSA:3.30.1360.40 15 86 1.2E-7 T 12-10-2018 Alide_1004 9c8cc889dc1e1851c7a3aa7294c38242 227 SUPERFAMILY SSF50891 99 224 4.93E-42 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_1004 9c8cc889dc1e1851c7a3aa7294c38242 227 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 20 220 4.9E-63 T 12-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Alide_1004 9c8cc889dc1e1851c7a3aa7294c38242 227 Gene3D G3DSA:2.40.100.10 97 226 9.2E-51 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 Gene3D G3DSA:3.30.54.20 623 675 3.3E-48 T 12-10-2018 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 SUPERFAMILY SSF50447 454 551 5.65E-19 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 9 852 5.3E-299 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 Gene3D G3DSA:3.30.930.10 5 252 1.2E-116 T 12-10-2018 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 Pfam PF01411 tRNA synthetases class II (A) 9 553 1.7E-214 T 12-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 Gene3D G3DSA:3.10.310.40 762 870 6.2E-29 T 12-10-2018 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 Pfam PF02272 DHHA1 domain 735 869 1.7E-26 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 652 694 1.3E-15 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 Gene3D G3DSA:3.30.980.10 561 695 3.3E-48 T 12-10-2018 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 SUPERFAMILY SSF101353 256 446 1.06E-57 T 12-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 SMART SM00863 652 694 7.7E-19 T 12-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 SUPERFAMILY SSF55681 6 255 2.36E-106 T 12-10-2018 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 PRINTS PR00980 Alanyl-tRNA synthetase signature 236 249 1.6E-30 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 PRINTS PR00980 Alanyl-tRNA synthetase signature 306 319 1.6E-30 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 PRINTS PR00980 Alanyl-tRNA synthetase signature 209 220 1.6E-30 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 PRINTS PR00980 Alanyl-tRNA synthetase signature 78 89 1.6E-30 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 PRINTS PR00980 Alanyl-tRNA synthetase signature 282 298 1.6E-30 T 12-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 Gene3D G3DSA:2.40.30.130 461 551 9.8E-11 T 12-10-2018 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 SUPERFAMILY SSF55186 551 706 1.57E-45 T 12-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Alide_2582 67c1e94661f7f871cf167e9e5231ae4d 873 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 873 197.005 T 12-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 Alide_1209 a500a8d1d19ce045e5c36d01397e8634 360 Pfam PF00155 Aminotransferase class I and II 28 356 1.6E-56 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_1209 a500a8d1d19ce045e5c36d01397e8634 360 Gene3D G3DSA:3.40.640.10 40 267 5.5E-103 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_1209 a500a8d1d19ce045e5c36d01397e8634 360 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 215 224 - T 12-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 Alide_1209 a500a8d1d19ce045e5c36d01397e8634 360 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 360 53.969 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Alide_1209 a500a8d1d19ce045e5c36d01397e8634 360 SUPERFAMILY SSF53383 8 359 2.86E-81 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_1209 a500a8d1d19ce045e5c36d01397e8634 360 Gene3D G3DSA:3.90.1150.10 22 349 5.5E-103 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_1209 a500a8d1d19ce045e5c36d01397e8634 360 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 11 358 2.5E-84 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Alide_0974 cfb0dca782fbeb317abab75bbdbb1560 496 PIRSF PIRSF002741 1 495 1.7E-93 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Alide_0974 cfb0dca782fbeb317abab75bbdbb1560 496 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 400 4.6E-81 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain Alide_0974 cfb0dca782fbeb317abab75bbdbb1560 496 Gene3D G3DSA:3.40.190.10 185 478 4.2E-109 T 12-10-2018 Alide_0974 cfb0dca782fbeb317abab75bbdbb1560 496 Gene3D G3DSA:3.90.76.10 41 184 4.2E-109 T 12-10-2018 Alide_0974 cfb0dca782fbeb317abab75bbdbb1560 496 Gene3D G3DSA:3.10.105.10 260 469 4.2E-109 T 12-10-2018 Alide_0974 cfb0dca782fbeb317abab75bbdbb1560 496 SUPERFAMILY SSF53850 28 494 2.02E-118 T 12-10-2018 Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 Pfam PF00037 4Fe-4S binding domain 192 212 1.5E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 Pfam PF12838 4Fe-4S dicluster domain 318 362 1.8E-8 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 Pfam PF13187 4Fe-4S dicluster domain 569 616 1.6E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 570 581 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 Gene3D G3DSA:3.30.70.20 192 239 4.2E-7 T 12-10-2018 Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 Gene3D G3DSA:3.30.70.20 595 648 1.3E-5 T 12-10-2018 Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 Gene3D G3DSA:3.30.70.20 312 391 1.3E-11 T 12-10-2018 Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 348 359 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 SUPERFAMILY SSF54862 192 663 3.47E-53 T 12-10-2018 Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 197 208 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 Gene3D G3DSA:3.30.70.20 545 592 2.4E-6 T 12-10-2018 Alide_3386 add7e75112a38f383c1b5bd4c27b6a92 699 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 601 612 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 Gene3D G3DSA:2.30.42.10 413 502 2.6E-16 T 12-10-2018 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 Gene3D G3DSA:2.30.42.10 298 406 3.1E-27 T 12-10-2018 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 55 497 9.7E-144 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 Pfam PF13365 Trypsin-like peptidase domain 131 264 1.0E-35 T 12-10-2018 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 Pfam PF13180 PDZ domain 416 500 2.0E-6 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 Pfam PF13180 PDZ domain 304 394 3.0E-16 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 SUPERFAMILY SSF50156 413 501 8.94E-16 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 SUPERFAMILY SSF50156 261 385 1.45E-24 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 Gene3D G3DSA:2.40.10.120 53 296 9.5E-80 T 12-10-2018 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 SUPERFAMILY SSF50494 53 294 5.0E-64 T 12-10-2018 IPR009003 Peptidase S1, PA clan Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 PRINTS PR00834 HtrA/DegQ protease family signature 140 152 3.5E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 PRINTS PR00834 HtrA/DegQ protease family signature 161 181 3.5E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 PRINTS PR00834 HtrA/DegQ protease family signature 201 225 3.5E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 PRINTS PR00834 HtrA/DegQ protease family signature 343 355 3.5E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 PRINTS PR00834 HtrA/DegQ protease family signature 235 252 3.5E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 PRINTS PR00834 HtrA/DegQ protease family signature 257 274 3.5E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 SMART SM00228 303 385 8.2E-15 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_3619 d661c0a035c142793e0b4ce88f3ed287 502 SMART SM00228 414 492 4.5E-9 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_2222 30682885c592fce5e09f4bb0c6182a5f 677 Pfam PF01432 Peptidase family M3 218 674 2.5E-134 T 12-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 Alide_2222 30682885c592fce5e09f4bb0c6182a5f 677 SUPERFAMILY SSF55486 1 674 1.71E-181 T 12-10-2018 Alide_2222 30682885c592fce5e09f4bb0c6182a5f 677 Gene3D G3DSA:1.10.1370.40 13 672 1.5E-243 T 12-10-2018 Alide_2222 30682885c592fce5e09f4bb0c6182a5f 677 Gene3D G3DSA:1.10.1370.10 136 603 1.5E-243 T 12-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 SUPERFAMILY SSF100950 75 234 5.38E-27 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 Gene3D G3DSA:1.10.10.10 1 56 3.1E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 SMART SM01134 73 234 3.7E-73 T 12-10-2018 Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 Pfam PF00455 DeoR C terminal sensor domain 75 232 4.4E-53 T 12-10-2018 IPR014036 DeoR C-terminal sensor domain Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 12-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 7.6E-16 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 Gene3D G3DSA:3.30.750.70 69 132 5.3E-5 T 12-10-2018 Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 SMART SM00419 11 60 0.0031 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 2.0E-8 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 2.0E-8 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 SUPERFAMILY SSF46785 3 61 9.87E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3975 0b8e6609e84ed0df114c6f4eae40f95d 253 SMART SM00420 6 58 4.1E-13 T 12-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Alide_4471 4721246d21d8d012ed5efa1e275c8210 113 Gene3D G3DSA:2.40.50.140 1 112 1.4E-28 T 12-10-2018 Alide_4471 4721246d21d8d012ed5efa1e275c8210 113 SUPERFAMILY SSF50249 1 111 5.14E-31 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_4471 4721246d21d8d012ed5efa1e275c8210 113 Pfam PF00436 Single-strand binding protein family 6 103 2.1E-22 T 12-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Alide_4471 4721246d21d8d012ed5efa1e275c8210 113 PIRSF PIRSF002070 1 112 2.2E-29 T 12-10-2018 Alide_4471 4721246d21d8d012ed5efa1e275c8210 113 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 4 107 4.0E-26 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Alide_4471 4721246d21d8d012ed5efa1e275c8210 113 Hamap MF_00984 Single-stranded DNA-binding protein. 3 108 23.126 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Alide_1475 4a0a36a614021c286a4977b3294b58d6 146 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 144 36.36 T 12-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Alide_1475 4a0a36a614021c286a4977b3294b58d6 146 Pfam PF07977 FabA-like domain 11 136 9.8E-37 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Alide_1475 4a0a36a614021c286a4977b3294b58d6 146 Gene3D G3DSA:3.10.129.10 1 145 2.6E-60 T 12-10-2018 Alide_1475 4a0a36a614021c286a4977b3294b58d6 146 SUPERFAMILY SSF54637 1 142 7.67E-49 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_1475 4a0a36a614021c286a4977b3294b58d6 146 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2 141 8.6E-61 T 12-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 PIRSF PIRSF500210 1 335 3.2E-126 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 Gene3D G3DSA:3.40.190.80 198 333 1.2E-54 T 12-10-2018 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 194 3.1E-62 T 12-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 308 333 4.2E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 4.2E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 180 203 4.2E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 206 233 4.2E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 30 57 4.2E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 149 172 4.2E-70 T 12-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 334 46.825 T 12-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 PIRSF PIRSF000904 1 335 7.0E-124 T 12-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 Gene3D G3DSA:3.30.540.10 2 197 2.0E-69 T 12-10-2018 Alide_1484 b9b8f886ef004413d3e54b417085d7f5 335 SUPERFAMILY SSF56655 3 332 1.34E-116 T 12-10-2018 Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 Pfam PF00106 short chain dehydrogenase 4 196 7.9E-62 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 9.8E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 9.8E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 9.8E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 9.9E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 9.9E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 9.9E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 9.9E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 9.9E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 9.9E-47 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 Gene3D G3DSA:3.40.50.720 1 245 1.8E-80 T 12-10-2018 Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 SUPERFAMILY SSF51735 3 244 5.4E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 244 1.6E-114 T 12-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 Alide_2263 e42ff66602b8801b8e1705c8e97cdb2b 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 188 4.2E-5 T 12-10-2018 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 SUPERFAMILY SSF50156 237 360 8.41E-23 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 Gene3D G3DSA:2.30.42.10 273 378 4.9E-27 T 12-10-2018 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 Pfam PF13180 PDZ domain 278 367 3.4E-14 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 PRINTS PR00834 HtrA/DegQ protease family signature 175 199 2.4E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 PRINTS PR00834 HtrA/DegQ protease family signature 232 249 2.4E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 PRINTS PR00834 HtrA/DegQ protease family signature 114 126 2.4E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 PRINTS PR00834 HtrA/DegQ protease family signature 318 330 2.4E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 PRINTS PR00834 HtrA/DegQ protease family signature 210 227 2.4E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 PRINTS PR00834 HtrA/DegQ protease family signature 135 155 2.4E-54 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 SMART SM00228 278 360 1.1E-12 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 58 374 8.2E-127 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 Pfam PF13365 Trypsin-like peptidase domain 105 239 4.5E-35 T 12-10-2018 Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 SUPERFAMILY SSF50494 58 274 2.18E-67 T 12-10-2018 IPR009003 Peptidase S1, PA clan Alide_0899 77c79836f717262ff699c31c5a2ec1d4 379 Gene3D G3DSA:2.40.10.120 57 271 1.8E-82 T 12-10-2018 Alide_0648 1941ba461686f944c5735c983e23ea24 567 Gene3D G3DSA:3.40.50.300 292 567 5.7E-105 T 12-10-2018 Alide_0648 1941ba461686f944c5735c983e23ea24 567 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 385 399 - T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0648 1941ba461686f944c5735c983e23ea24 567 Pfam PF00437 Type II/IV secretion system protein 192 457 3.0E-82 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0648 1941ba461686f944c5735c983e23ea24 567 Gene3D G3DSA:3.30.300.160 69 152 3.1E-5 T 12-10-2018 Alide_0648 1941ba461686f944c5735c983e23ea24 567 SUPERFAMILY SSF52540 174 562 6.7E-97 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0648 1941ba461686f944c5735c983e23ea24 567 Gene3D G3DSA:3.30.450.90 160 290 2.8E-44 T 12-10-2018 Alide_0648 1941ba461686f944c5735c983e23ea24 567 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 48 153 4.1E-14 T 12-10-2018 IPR007831 General secretory system II, protein E, N-terminal Alide_0648 1941ba461686f944c5735c983e23ea24 567 SUPERFAMILY SSF160246 10 151 4.45E-23 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 SUPERFAMILY SSF48557 1 456 2.04E-138 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 Gene3D G3DSA:1.10.40.30 406 455 2.1E-16 T 12-10-2018 Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 Pfam PF10415 Fumarase C C-terminus 406 458 3.0E-18 T 12-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 ProSitePatterns PS00163 Fumarate lyases signature. 315 324 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 PRINTS PR00149 Fumarate lyase superfamily signature 178 196 2.4E-29 T 12-10-2018 IPR000362 Fumarate lyase family Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 PRINTS PR00149 Fumarate lyase superfamily signature 315 331 2.4E-29 T 12-10-2018 IPR000362 Fumarate lyase family Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 PRINTS PR00149 Fumarate lyase superfamily signature 269 296 2.4E-29 T 12-10-2018 IPR000362 Fumarate lyase family Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 2.4E-29 T 12-10-2018 IPR000362 Fumarate lyase family Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 Gene3D G3DSA:1.10.275.10 1 137 8.0E-58 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 Gene3D G3DSA:1.20.200.10 138 404 6.9E-106 T 12-10-2018 Alide_2027 668ffc9d173a478e646163d10a4dd2c9 467 Pfam PF00206 Lyase 12 340 1.6E-94 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal Alide_0482 9037c90ec4dd10ff8d44c0105d6d9c6b 336 Gene3D G3DSA:3.90.25.10 181 329 2.2E-92 T 12-10-2018 Alide_0482 9037c90ec4dd10ff8d44c0105d6d9c6b 336 SUPERFAMILY SSF51735 1 334 1.15E-86 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0482 9037c90ec4dd10ff8d44c0105d6d9c6b 336 PRINTS PR01713 Nucleotide sugar epimerase signature 296 313 3.7E-26 T 12-10-2018 Alide_0482 9037c90ec4dd10ff8d44c0105d6d9c6b 336 PRINTS PR01713 Nucleotide sugar epimerase signature 30 46 3.7E-26 T 12-10-2018 Alide_0482 9037c90ec4dd10ff8d44c0105d6d9c6b 336 PRINTS PR01713 Nucleotide sugar epimerase signature 257 272 3.7E-26 T 12-10-2018 Alide_0482 9037c90ec4dd10ff8d44c0105d6d9c6b 336 PRINTS PR01713 Nucleotide sugar epimerase signature 217 232 3.7E-26 T 12-10-2018 Alide_0482 9037c90ec4dd10ff8d44c0105d6d9c6b 336 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 243 2.3E-57 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Alide_0482 9037c90ec4dd10ff8d44c0105d6d9c6b 336 Gene3D G3DSA:3.40.50.720 5 317 2.2E-92 T 12-10-2018 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 116 2.2E-22 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 SUPERFAMILY SSF47203 229 384 2.42E-38 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 Gene3D G3DSA:1.10.540.10 1 116 1.2E-28 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 PIRSF PIRSF016578 3 196 2.0E-8 T 12-10-2018 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 PIRSF PIRSF016578 229 385 2.3E-4 T 12-10-2018 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 SUPERFAMILY SSF56645 1 229 1.57E-55 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 Gene3D G3DSA:2.40.110.10 120 235 7.5E-29 T 12-10-2018 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 Gene3D G3DSA:1.20.140.10 236 380 2.4E-33 T 12-10-2018 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 364 3.7E-30 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3524 3060de1fd229ac44a00547d7d08e35f7 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 218 4.2E-18 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Gene3D G3DSA:3.30.470.20 119 401 3.0E-130 T 12-10-2018 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Gene3D G3DSA:3.40.50.1380 943 1080 1.8E-37 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1075 13.283 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1059 0.0 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1070 13.118 T 12-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 SUPERFAMILY SSF52440 558 677 3.88E-50 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 SUPERFAMILY SSF56059 675 940 3.01E-101 T 12-10-2018 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Gene3D G3DSA:3.30.470.20 667 942 1.2E-114 T 12-10-2018 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 SUPERFAMILY SSF52335 942 1078 1.05E-38 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 SUPERFAMILY SSF56059 128 401 4.6E-109 T 12-10-2018 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 SUPERFAMILY SSF48108 396 556 1.44E-51 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 3.1E-72 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 675 880 1.1E-35 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Pfam PF02142 MGS-like domain 963 1049 2.1E-20 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.8E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.8E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.8E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.8E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.8E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.8E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.8E-66 T 12-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Gene3D G3DSA:3.40.50.20 556 664 7.4E-50 T 12-10-2018 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Gene3D G3DSA:1.10.1030.10 402 555 8.0E-50 T 12-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 SMART SM01096 419 549 1.7E-75 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 SMART SM00851 962 1049 3.8E-30 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 711 725 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 SUPERFAMILY SSF52440 1 127 2.16E-50 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Gene3D G3DSA:3.40.50.20 1 116 5.6E-50 T 12-10-2018 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 422 549 1.0E-41 T 12-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_2504 654ab9e957b6d74b17d3ad29a0263034 1083 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 845 852 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_3176 665a202b41136cab37cabb317f071e97 602 Gene3D G3DSA:3.30.70.870 292 373 4.8E-36 T 12-10-2018 Alide_3176 665a202b41136cab37cabb317f071e97 602 SUPERFAMILY SSF54980 405 499 4.27E-26 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_3176 665a202b41136cab37cabb317f071e97 602 Gene3D G3DSA:3.30.70.3380 374 484 6.3E-43 T 12-10-2018 Alide_3176 665a202b41136cab37cabb317f071e97 602 SUPERFAMILY SSF50447 182 279 1.17E-19 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_3176 665a202b41136cab37cabb317f071e97 602 Pfam PF00009 Elongation factor Tu GTP binding domain 3 181 7.6E-53 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_3176 665a202b41136cab37cabb317f071e97 602 Gene3D G3DSA:3.30.70.2570 485 559 2.8E-32 T 12-10-2018 IPR038363 LepA, C-terminal domain superfamily Alide_3176 665a202b41136cab37cabb317f071e97 602 Pfam PF03144 Elongation factor Tu domain 2 205 275 2.7E-8 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Alide_3176 665a202b41136cab37cabb317f071e97 602 Pfam PF06421 GTP-binding protein LepA C-terminus 493 599 6.4E-49 T 12-10-2018 IPR013842 GTP-binding protein LepA, C-terminal Alide_3176 665a202b41136cab37cabb317f071e97 602 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 175 6.3E-20 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_3176 665a202b41136cab37cabb317f071e97 602 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site Alide_3176 665a202b41136cab37cabb317f071e97 602 Hamap MF_00071 Elongation factor 4 [lepA]. 1 602 305.617 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 Alide_3176 665a202b41136cab37cabb317f071e97 602 SMART SM00838 404 491 0.0017 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like Alide_3176 665a202b41136cab37cabb317f071e97 602 SUPERFAMILY SSF54980 298 376 2.12E-18 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_3176 665a202b41136cab37cabb317f071e97 602 PRINTS PR00315 GTP-binding elongation factor signature 90 101 2.5E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_3176 665a202b41136cab37cabb317f071e97 602 PRINTS PR00315 GTP-binding elongation factor signature 74 84 2.5E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_3176 665a202b41136cab37cabb317f071e97 602 PRINTS PR00315 GTP-binding elongation factor signature 6 19 2.5E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_3176 665a202b41136cab37cabb317f071e97 602 PRINTS PR00315 GTP-binding elongation factor signature 49 57 2.5E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_3176 665a202b41136cab37cabb317f071e97 602 PRINTS PR00315 GTP-binding elongation factor signature 126 135 2.5E-14 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_3176 665a202b41136cab37cabb317f071e97 602 Gene3D G3DSA:3.40.50.300 1 185 1.1E-71 T 12-10-2018 Alide_3176 665a202b41136cab37cabb317f071e97 602 Gene3D G3DSA:2.40.30.10 186 284 7.6E-36 T 12-10-2018 Alide_3176 665a202b41136cab37cabb317f071e97 602 Pfam PF00679 Elongation factor G C-terminus 405 490 9.4E-23 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like Alide_3176 665a202b41136cab37cabb317f071e97 602 SUPERFAMILY SSF52540 2 205 3.01E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3176 665a202b41136cab37cabb317f071e97 602 TIGRFAM TIGR01393 lepA: elongation factor 4 3 601 7.8E-296 T 12-10-2018 IPR006297 Elongation factor 4 GO:0005525 Alide_3443 efdd9d71f5203b5e3d1b265ee46536b2 447 Gene3D G3DSA:3.30.565.10 315 445 2.9E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3443 efdd9d71f5203b5e3d1b265ee46536b2 447 Pfam PF05227 CHASE3 domain 41 171 1.2E-35 T 12-10-2018 IPR007891 CHASE3 Alide_3443 efdd9d71f5203b5e3d1b265ee46536b2 447 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 444 9.2E-6 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3443 efdd9d71f5203b5e3d1b265ee46536b2 447 Gene3D G3DSA:1.20.1440.210 44 169 1.2E-27 T 12-10-2018 Alide_3443 efdd9d71f5203b5e3d1b265ee46536b2 447 SUPERFAMILY SSF55874 323 443 1.44E-17 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3443 efdd9d71f5203b5e3d1b265ee46536b2 447 Pfam PF07730 Histidine kinase 250 317 8.3E-12 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Alide_3443 efdd9d71f5203b5e3d1b265ee46536b2 447 SMART SM00387 353 446 1.9E-4 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1490 7530b90d8afbe7244960fabc3e69da2b 576 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 378 566 4.0E-14 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1490 7530b90d8afbe7244960fabc3e69da2b 576 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 281 5.3E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1490 7530b90d8afbe7244960fabc3e69da2b 576 SUPERFAMILY SSF161098 304 567 5.89E-49 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1490 7530b90d8afbe7244960fabc3e69da2b 576 Gene3D G3DSA:1.10.3720.10 296 561 9.5E-44 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1490 7530b90d8afbe7244960fabc3e69da2b 576 Gene3D G3DSA:1.10.3720.10 24 288 6.4E-57 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1490 7530b90d8afbe7244960fabc3e69da2b 576 SUPERFAMILY SSF161098 23 289 1.31E-49 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0395 d712c631731d93457a5ac30c4cb62825 399 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 208 296 2.9E-15 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_0395 d712c631731d93457a5ac30c4cb62825 399 Gene3D G3DSA:2.40.50.100 54 87 2.9E-9 T 12-10-2018 Alide_0395 d712c631731d93457a5ac30c4cb62825 399 Gene3D G3DSA:2.40.30.170 240 358 2.4E-35 T 12-10-2018 Alide_0395 d712c631731d93457a5ac30c4cb62825 399 Gene3D G3DSA:1.10.287.470 88 110 2.9E-9 T 12-10-2018 Alide_0395 d712c631731d93457a5ac30c4cb62825 399 SUPERFAMILY SSF111369 170 276 9.15E-9 T 12-10-2018 Alide_0395 d712c631731d93457a5ac30c4cb62825 399 SUPERFAMILY SSF111369 53 143 1.11E-9 T 12-10-2018 Alide_0395 d712c631731d93457a5ac30c4cb62825 399 Pfam PF13533 Biotin-lipoyl like 54 102 4.3E-9 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Alide_0395 d712c631731d93457a5ac30c4cb62825 399 Gene3D G3DSA:1.10.287.470 114 196 6.3E-11 T 12-10-2018 Alide_0396 4dd8911cca7e0cdba7a3e10597b571a5 473 Gene3D G3DSA:1.20.1600.10 58 470 4.1E-120 T 12-10-2018 Alide_0396 4dd8911cca7e0cdba7a3e10597b571a5 473 Gene3D G3DSA:2.20.200.10 105 358 4.1E-120 T 12-10-2018 Alide_0396 4dd8911cca7e0cdba7a3e10597b571a5 473 SUPERFAMILY SSF56954 11 470 2.49E-101 T 12-10-2018 Alide_0396 4dd8911cca7e0cdba7a3e10597b571a5 473 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 19 469 5.6E-126 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Alide_0396 4dd8911cca7e0cdba7a3e10597b571a5 473 Pfam PF02321 Outer membrane efflux protein 68 259 1.9E-25 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_0396 4dd8911cca7e0cdba7a3e10597b571a5 473 Pfam PF02321 Outer membrane efflux protein 291 467 7.9E-21 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 190 7.8E-5 T 12-10-2018 Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 SUPERFAMILY SSF51735 7 247 3.12E-85 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 246 2.5E-66 T 12-10-2018 Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.6E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 5.6E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.6E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.6E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.6E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 5.6E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 Gene3D G3DSA:3.40.50.720 3 248 5.3E-87 T 12-10-2018 Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.2E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 6.2E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2937 131d845204a920e86e1aaf2ec353e82b 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 6.2E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0094 f9cf757b43f5c6778880623d00bd48ea 262 Gene3D G3DSA:1.10.12.10 207 262 2.0E-19 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_0094 f9cf757b43f5c6778880623d00bd48ea 262 Gene3D G3DSA:3.90.226.10 1 206 1.4E-66 T 12-10-2018 Alide_0094 f9cf757b43f5c6778880623d00bd48ea 262 SUPERFAMILY SSF52096 3 262 1.16E-81 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0094 f9cf757b43f5c6778880623d00bd48ea 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 262 9.8E-60 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3080 899794ac27ae058e0c72548e1f297b4b 310 Pfam PF00005 ABC transporter 29 169 6.1E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3080 899794ac27ae058e0c72548e1f297b4b 310 Gene3D G3DSA:3.40.50.300 4 239 7.8E-65 T 12-10-2018 Alide_3080 899794ac27ae058e0c72548e1f297b4b 310 SMART SM00382 37 217 4.9E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3080 899794ac27ae058e0c72548e1f297b4b 310 SUPERFAMILY SSF52540 12 231 1.62E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3080 899794ac27ae058e0c72548e1f297b4b 310 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 556 567 2.5E-25 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 578 588 2.5E-25 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 635 654 2.5E-25 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 428 442 2.5E-25 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 658 670 2.5E-25 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 278 292 2.5E-25 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 SUPERFAMILY SSF55008 15 81 6.81E-17 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 Gene3D G3DSA:3.40.1110.10 439 563 2.8E-85 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 201 719 7.4E-80 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 430 436 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 163 737 1.4E-181 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 Gene3D G3DSA:2.70.150.20 222 333 3.1E-38 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 SUPERFAMILY SSF81665 189 708 2.09E-14 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00943 Copper-transporting ATPase signature 351 365 1.5E-8 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00943 Copper-transporting ATPase signature 411 426 1.5E-8 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00943 Copper-transporting ATPase signature 148 167 1.5E-8 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00943 Copper-transporting ATPase signature 198 217 1.5E-8 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 PRINTS PR00943 Copper-transporting ATPase signature 612 629 1.5E-8 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 Gene3D G3DSA:3.30.70.100 13 80 2.5E-19 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 Gene3D G3DSA:3.40.50.1000 409 687 2.8E-85 T 12-10-2018 IPR023214 HAD superfamily Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 ProSitePatterns PS01047 Heavy-metal-associated domain. 19 48 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 Pfam PF00702 haloacid dehalogenase-like hydrolase 426 649 2.1E-43 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 SUPERFAMILY SSF81653 231 328 4.45E-27 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 145 738 8.1E-173 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 Pfam PF00122 E1-E2 ATPase 229 408 9.7E-53 T 12-10-2018 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 Pfam PF00403 Heavy-metal-associated domain 19 79 6.0E-15 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Alide_0037 b036456efc58bd35cce1ed889b99ba7e 743 SUPERFAMILY SSF56784 426 735 4.25E-54 T 12-10-2018 IPR036412 HAD-like superfamily Alide_0341 dadbd807fc29dc97db2c99104c10b181 322 PIRSF PIRSF017082 3 322 9.9E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0341 dadbd807fc29dc97db2c99104c10b181 322 Gene3D G3DSA:3.40.190.10 123 247 1.1E-110 T 12-10-2018 Alide_0341 dadbd807fc29dc97db2c99104c10b181 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 44 319 2.5E-123 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0341 dadbd807fc29dc97db2c99104c10b181 322 SUPERFAMILY SSF53850 107 279 4.7E-5 T 12-10-2018 Alide_0341 dadbd807fc29dc97db2c99104c10b181 322 Gene3D G3DSA:3.40.190.150 25 312 1.1E-110 T 12-10-2018 Alide_3103 9b9be050d550bcefd7d61b4d79e3db51 355 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 350 6.2E-84 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_3103 9b9be050d550bcefd7d61b4d79e3db51 355 Gene3D G3DSA:3.40.718.10 1 355 1.0E-127 T 12-10-2018 Alide_3103 9b9be050d550bcefd7d61b4d79e3db51 355 SUPERFAMILY SSF53659 2 354 1.86E-110 T 12-10-2018 Alide_3103 9b9be050d550bcefd7d61b4d79e3db51 355 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 243 262 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Alide_3103 9b9be050d550bcefd7d61b4d79e3db51 355 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 3 354 2.2E-164 T 12-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 Alide_3103 9b9be050d550bcefd7d61b4d79e3db51 355 SMART SM01329 6 350 3.3E-162 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 Hamap MF_01113 DNA polymerase IV [dinB]. 5 397 32.293 T 12-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 Gene3D G3DSA:1.10.150.20 204 271 1.2E-20 T 12-10-2018 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 SUPERFAMILY SSF100879 277 381 2.35E-25 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 Gene3D G3DSA:2.30.40.20 16 104 5.9E-22 T 12-10-2018 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 Gene3D G3DSA:3.30.70.270 105 198 9.0E-26 T 12-10-2018 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 Pfam PF00817 impB/mucB/samB family 11 188 4.7E-46 T 12-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 Pfam PF11799 impB/mucB/samB family C-terminal domain 270 384 2.4E-19 T 12-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 Gene3D G3DSA:3.30.1490.100 277 382 9.9E-26 T 12-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 Pfam PF11798 IMS family HHH motif 200 231 6.3E-6 T 12-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Alide_3201 aea5d8249cd0c3622e28994eb2d4425e 397 SUPERFAMILY SSF56672 5 269 7.65E-78 T 12-10-2018 Alide_4469 66abaa25d03f620c14ddc53c148d3faa 88 Gene3D G3DSA:1.10.1220.10 5 53 4.3E-16 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Alide_4469 66abaa25d03f620c14ddc53c148d3faa 88 Pfam PF04221 RelB antitoxin 7 75 2.0E-22 T 12-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ Alide_4469 66abaa25d03f620c14ddc53c148d3faa 88 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 1 84 4.1E-22 T 12-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ Alide_4469 66abaa25d03f620c14ddc53c148d3faa 88 PIRSF PIRSF003108 1 88 9.9E-31 T 12-10-2018 IPR026262 Antitoxin DinJ GO:0000986|GO:0015643|GO:0044010 Alide_2901 61dbb6e020ef1ee040cc71398773abeb 408 Gene3D G3DSA:1.20.140.10 251 407 1.8E-39 T 12-10-2018 Alide_2901 61dbb6e020ef1ee040cc71398773abeb 408 Gene3D G3DSA:2.40.110.10 135 250 1.0E-50 T 12-10-2018 Alide_2901 61dbb6e020ef1ee040cc71398773abeb 408 SUPERFAMILY SSF47203 248 404 4.83E-43 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2901 61dbb6e020ef1ee040cc71398773abeb 408 Gene3D G3DSA:1.10.540.10 1 134 5.4E-57 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2901 61dbb6e020ef1ee040cc71398773abeb 408 SUPERFAMILY SSF56645 1 263 2.88E-69 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2901 61dbb6e020ef1ee040cc71398773abeb 408 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 131 8.4E-16 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2901 61dbb6e020ef1ee040cc71398773abeb 408 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 238 4.4E-20 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2901 61dbb6e020ef1ee040cc71398773abeb 408 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 250 398 3.7E-35 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2141 9daa40c987bddb96b5d9c834d09a2614 472 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 437 3.1E-164 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 Alide_2141 9daa40c987bddb96b5d9c834d09a2614 472 PIRSF PIRSF006446 2 459 6.8E-212 T 12-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 Alide_4463 f48d982f7defddb0a73316cff06f24ce 204 Pfam PF16925 Bacterial transcriptional repressor C-terminal 80 162 2.2E-7 T 12-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Alide_4463 f48d982f7defddb0a73316cff06f24ce 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 3.4E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_4463 f48d982f7defddb0a73316cff06f24ce 204 Gene3D G3DSA:1.10.357.10 67 196 3.8E-29 T 12-10-2018 Alide_4463 f48d982f7defddb0a73316cff06f24ce 204 SUPERFAMILY SSF48498 80 192 9.69E-27 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_4463 f48d982f7defddb0a73316cff06f24ce 204 Gene3D G3DSA:1.10.10.60 1 65 1.8E-27 T 12-10-2018 Alide_4463 f48d982f7defddb0a73316cff06f24ce 204 SUPERFAMILY SSF46689 2 65 5.13E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 3.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 440 3.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 420 3.4E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 360 453 4.3E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 SUPERFAMILY SSF55874 300 464 2.36E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 SMART SM00388 248 311 1.4E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 Gene3D G3DSA:3.30.565.10 309 464 3.2E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 SUPERFAMILY SSF47384 231 309 2.35E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 Pfam PF08521 Two-component sensor kinase N-terminal 20 171 1.5E-39 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 SMART SM00387 355 466 1.5E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 Gene3D G3DSA:1.10.287.130 199 308 4.4E-20 T 12-10-2018 Alide_1911 dde6a9fbdf2e2aa053c89a6b3963769f 467 Pfam PF00512 His Kinase A (phospho-acceptor) domain 249 310 2.8E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2607 7dc233c9cabc31aae9a4574dd3da9399 431 SUPERFAMILY SSF109854 17 150 2.75E-7 T 12-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes Alide_2607 7dc233c9cabc31aae9a4574dd3da9399 431 Pfam PF03781 Sulfatase-modifying factor enzyme 1 193 340 1.1E-22 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Alide_2607 7dc233c9cabc31aae9a4574dd3da9399 431 SUPERFAMILY SSF56436 188 430 3.58E-70 T 12-10-2018 IPR016187 C-type lectin fold Alide_2607 7dc233c9cabc31aae9a4574dd3da9399 431 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 18 428 8.3E-173 T 12-10-2018 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 Alide_2607 7dc233c9cabc31aae9a4574dd3da9399 431 Gene3D G3DSA:3.90.1580.10 175 431 2.0E-39 T 12-10-2018 Alide_2607 7dc233c9cabc31aae9a4574dd3da9399 431 Pfam PF12867 DinB superfamily 21 153 1.3E-16 T 12-10-2018 IPR024775 DinB-like domain Alide_1740 2ec646d21489743a16687bd6118064e4 452 SMART SM00852 197 363 2.6E-45 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_1740 2ec646d21489743a16687bd6118064e4 452 Pfam PF03454 MoeA C-terminal region (domain IV) 376 448 1.1E-19 T 12-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_1740 2ec646d21489743a16687bd6118064e4 452 SUPERFAMILY SSF63882 22 193 4.32E-46 T 12-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_1740 2ec646d21489743a16687bd6118064e4 452 Gene3D G3DSA:2.170.190.11 62 158 5.6E-132 T 12-10-2018 Alide_1740 2ec646d21489743a16687bd6118064e4 452 Pfam PF03453 MoeA N-terminal region (domain I and II) 28 184 2.4E-38 T 12-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_1740 2ec646d21489743a16687bd6118064e4 452 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 194 359 3.7E-29 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_1740 2ec646d21489743a16687bd6118064e4 452 Gene3D G3DSA:3.40.980.10 192 372 5.6E-132 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily Alide_1740 2ec646d21489743a16687bd6118064e4 452 SUPERFAMILY SSF53218 192 368 1.83E-41 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily Alide_1740 2ec646d21489743a16687bd6118064e4 452 Gene3D G3DSA:2.40.340.10 373 443 5.6E-132 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_1740 2ec646d21489743a16687bd6118064e4 452 Pfam PF00994 Probable molybdopterin binding domain 199 361 1.7E-28 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_1740 2ec646d21489743a16687bd6118064e4 452 Gene3D G3DSA:3.90.105.10 38 191 5.6E-132 T 12-10-2018 Alide_1740 2ec646d21489743a16687bd6118064e4 452 SUPERFAMILY SSF63867 372 451 6.41E-26 T 12-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Gene3D G3DSA:3.30.565.10 579 735 1.5E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 SUPERFAMILY SSF47384 501 582 1.67E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Gene3D G3DSA:3.30.450.20 58 180 1.4E-69 T 12-10-2018 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Pfam PF02743 Cache domain 39 209 1.2E-13 T 12-10-2018 IPR033479 Double Cache domain 1 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Pfam PF00072 Response regulator receiver domain 764 871 1.7E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 SUPERFAMILY SSF103190 57 190 4.45E-12 T 12-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 SUPERFAMILY SSF55785 355 475 3.62E-7 T 12-10-2018 IPR035965 PAS domain superfamily Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 SMART SM00448 760 873 5.1E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 SMART SM00387 624 735 2.9E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 SMART SM00388 515 580 5.1E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 624 734 7.2E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 SUPERFAMILY SSF55874 570 733 2.49E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 675 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 695 713 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 679 689 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 719 732 1.8E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 SUPERFAMILY SSF52172 761 881 1.76E-16 T 12-10-2018 IPR011006 CheY-like superfamily Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Pfam PF12860 PAS fold 368 481 8.0E-41 T 12-10-2018 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Gene3D G3DSA:3.30.450.20 353 481 2.6E-10 T 12-10-2018 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Gene3D G3DSA:3.40.50.2300 758 886 3.1E-15 T 12-10-2018 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Gene3D G3DSA:3.30.450.20 45 286 1.4E-69 T 12-10-2018 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Pfam PF00512 His Kinase A (phospho-acceptor) domain 516 580 3.2E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_4090 6bed81be8e31a5c593caa41c1ddef430 886 Gene3D G3DSA:1.10.287.130 482 578 8.2E-14 T 12-10-2018 Alide_0847 fe87f80bbd00091af66256b90b3f658e 390 SUPERFAMILY SSF109604 17 383 2.72E-87 T 12-10-2018 Alide_0847 fe87f80bbd00091af66256b90b3f658e 390 Pfam PF01966 HD domain 66 201 4.9E-16 T 12-10-2018 IPR006674 HD domain Alide_0847 fe87f80bbd00091af66256b90b3f658e 390 Pfam PF13286 Phosphohydrolase-associated domain 291 381 5.9E-29 T 12-10-2018 IPR026875 Phosphohydrolase-associated domain Alide_0847 fe87f80bbd00091af66256b90b3f658e 390 Gene3D G3DSA:1.10.3210.10 1 384 5.6E-132 T 12-10-2018 Alide_0847 fe87f80bbd00091af66256b90b3f658e 390 SMART SM00471 62 211 3.9E-10 T 12-10-2018 IPR003607 HD/PDEase domain Alide_0847 fe87f80bbd00091af66256b90b3f658e 390 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 6 383 37.688 T 12-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 Alide_0847 fe87f80bbd00091af66256b90b3f658e 390 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 28 383 1.5E-91 T 12-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 Alide_2738 edc2cc2edd9034cc3673656043e94fa7 168 SUPERFAMILY SSF49503 57 166 7.13E-31 T 12-10-2018 IPR008972 Cupredoxin Alide_2738 edc2cc2edd9034cc3673656043e94fa7 168 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 62 166 9.1E-11 T 12-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 Alide_2738 edc2cc2edd9034cc3673656043e94fa7 168 Gene3D G3DSA:2.60.40.420 48 167 2.1E-29 T 12-10-2018 IPR008972 Cupredoxin Alide_4133 6b1bdef1b0c29614121778cf2137d8fc 507 Gene3D G3DSA:3.40.50.300 2 181 5.4E-21 T 12-10-2018 Alide_4133 6b1bdef1b0c29614121778cf2137d8fc 507 SUPERFAMILY SSF52540 4 223 2.17E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4133 6b1bdef1b0c29614121778cf2137d8fc 507 Pfam PF03008 Archaea bacterial proteins of unknown function 337 433 1.2E-7 T 12-10-2018 IPR004256 Domain of unknown function DUF234, DEXX-box ATPase C-terminal Alide_0367 2ab4194c809aadb6c7b8a5586a4c7cbe 400 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0367 2ab4194c809aadb6c7b8a5586a4c7cbe 400 Gene3D G3DSA:1.20.140.10 238 384 1.9E-41 T 12-10-2018 Alide_0367 2ab4194c809aadb6c7b8a5586a4c7cbe 400 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 9.2E-40 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0367 2ab4194c809aadb6c7b8a5586a4c7cbe 400 SUPERFAMILY SSF47203 232 384 3.87E-48 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0367 2ab4194c809aadb6c7b8a5586a4c7cbe 400 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 124 1.5E-18 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0367 2ab4194c809aadb6c7b8a5586a4c7cbe 400 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 206 2.0E-17 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0367 2ab4194c809aadb6c7b8a5586a4c7cbe 400 Gene3D G3DSA:1.10.540.10 1 126 6.0E-34 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0367 2ab4194c809aadb6c7b8a5586a4c7cbe 400 SUPERFAMILY SSF56645 1 245 2.88E-61 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0367 2ab4194c809aadb6c7b8a5586a4c7cbe 400 Gene3D G3DSA:2.40.110.10 127 237 1.0E-30 T 12-10-2018 Alide_2236 21b17c6cb27e3162c2fc69fcf059fc82 329 SUPERFAMILY SSF53850 113 291 1.16E-11 T 12-10-2018 Alide_2236 21b17c6cb27e3162c2fc69fcf059fc82 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 327 2.3E-68 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2236 21b17c6cb27e3162c2fc69fcf059fc82 329 Gene3D G3DSA:3.40.190.150 36 320 5.1E-97 T 12-10-2018 Alide_2236 21b17c6cb27e3162c2fc69fcf059fc82 329 PIRSF PIRSF017082 1 329 2.1E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2236 21b17c6cb27e3162c2fc69fcf059fc82 329 Gene3D G3DSA:3.40.190.10 131 255 5.1E-97 T 12-10-2018 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 SUPERFAMILY SSF55874 598 742 3.67E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 SUPERFAMILY SSF158472 335 382 2.88E-7 T 12-10-2018 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 Gene3D G3DSA:1.10.287.130 516 595 3.0E-13 T 12-10-2018 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 Gene3D G3DSA:3.30.450.20 390 515 4.0E-8 T 12-10-2018 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 SMART SM00387 638 758 6.6E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 Pfam PF08448 PAS fold 405 461 2.4E-5 T 12-10-2018 IPR013656 PAS fold-4 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 SMART SM00091 399 465 7.7E-5 T 12-10-2018 IPR000014 PAS domain Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 PRINTS PR00344 Bacterial sensor protein C-terminal signature 714 732 3.8E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 699 3.8E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 PRINTS PR00344 Bacterial sensor protein C-terminal signature 703 713 3.8E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 SMART SM00388 526 598 9.1E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 Gene3D G3DSA:1.20.1480.50 301 389 1.0E-10 T 12-10-2018 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 Pfam PF00672 HAMP domain 335 381 1.4E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 PIRSF PIRSF037532 5 761 3.3E-202 T 12-10-2018 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 SMART SM00304 333 385 1.2E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 Pfam PF00512 His Kinase A (phospho-acceptor) domain 527 596 1.2E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 Gene3D G3DSA:3.30.565.10 597 758 1.1E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 SUPERFAMILY SSF47384 522 597 3.34E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 638 742 1.4E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0467 952828d63721f313a0e7e45c4946d0e5 762 SUPERFAMILY SSF55785 401 473 1.12E-8 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3090 a89ded7acfe246ef1324e4eb8baf8c7e 116 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 3 116 4.3E-38 T 12-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Alide_3090 a89ded7acfe246ef1324e4eb8baf8c7e 116 ProSitePatterns PS00768 Transthyretin signature 1. 6 21 - T 12-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Alide_3090 a89ded7acfe246ef1324e4eb8baf8c7e 116 Gene3D G3DSA:2.60.40.180 1 116 1.2E-37 T 12-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Alide_3090 a89ded7acfe246ef1324e4eb8baf8c7e 116 SUPERFAMILY SSF49472 3 116 2.75E-39 T 12-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Alide_3090 a89ded7acfe246ef1324e4eb8baf8c7e 116 PRINTS PR00189 Transthyretin signature 2 22 6.4E-8 T 12-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Alide_3090 a89ded7acfe246ef1324e4eb8baf8c7e 116 PRINTS PR00189 Transthyretin signature 94 116 6.4E-8 T 12-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Alide_3090 a89ded7acfe246ef1324e4eb8baf8c7e 116 Pfam PF00576 HIUase/Transthyretin family 3 115 1.6E-34 T 12-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Alide_3090 a89ded7acfe246ef1324e4eb8baf8c7e 116 ProSitePatterns PS00769 Transthyretin signature 2. 99 111 - T 12-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 Alide_4011 b39841d1d98fa2c8cb9f33387f4fa2f3 759 SMART SM00487 69 413 1.8E-10 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_4011 b39841d1d98fa2c8cb9f33387f4fa2f3 759 Gene3D G3DSA:3.40.50.300 495 749 2.6E-24 T 12-10-2018 Alide_4011 b39841d1d98fa2c8cb9f33387f4fa2f3 759 SUPERFAMILY SSF52540 69 412 4.84E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4011 b39841d1d98fa2c8cb9f33387f4fa2f3 759 Gene3D G3DSA:3.40.50.10810 300 454 5.6E-7 T 12-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily Alide_4011 b39841d1d98fa2c8cb9f33387f4fa2f3 759 SUPERFAMILY SSF52540 351 736 4.53E-29 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4011 b39841d1d98fa2c8cb9f33387f4fa2f3 759 Gene3D G3DSA:3.40.50.300 60 180 9.3E-9 T 12-10-2018 Alide_4011 b39841d1d98fa2c8cb9f33387f4fa2f3 759 Pfam PF00271 Helicase conserved C-terminal domain 585 695 1.8E-6 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1165 2bbd3df124421894b15afaba8734f6f3 328 SMART SM00829 11 325 8.1E-32 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_1165 2bbd3df124421894b15afaba8734f6f3 328 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 143 164 - T 12-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 Alide_1165 2bbd3df124421894b15afaba8734f6f3 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 134 3.5E-11 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_1165 2bbd3df124421894b15afaba8734f6f3 328 Pfam PF00107 Zinc-binding dehydrogenase 154 259 2.4E-28 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_1165 2bbd3df124421894b15afaba8734f6f3 328 SUPERFAMILY SSF50129 3 138 2.52E-35 T 12-10-2018 IPR011032 GroES-like superfamily Alide_1165 2bbd3df124421894b15afaba8734f6f3 328 Gene3D G3DSA:3.40.50.720 123 271 8.1E-115 T 12-10-2018 Alide_1165 2bbd3df124421894b15afaba8734f6f3 328 Gene3D G3DSA:3.90.180.10 12 321 8.1E-115 T 12-10-2018 Alide_1165 2bbd3df124421894b15afaba8734f6f3 328 SUPERFAMILY SSF51735 112 267 1.09E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0013 b7285c54915f4a6fb93e5c9b243f9514 101 PRINTS PR00112 Acylphosphatase signature 30 55 1.0E-7 T 12-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Alide_0013 b7285c54915f4a6fb93e5c9b243f9514 101 PRINTS PR00112 Acylphosphatase signature 9 24 1.0E-7 T 12-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Alide_0013 b7285c54915f4a6fb93e5c9b243f9514 101 ProSitePatterns PS00151 Acylphosphatase signature 2. 38 54 - T 12-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Alide_0013 b7285c54915f4a6fb93e5c9b243f9514 101 Pfam PF00708 Acylphosphatase 11 87 3.7E-24 T 12-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Alide_0013 b7285c54915f4a6fb93e5c9b243f9514 101 SUPERFAMILY SSF54975 7 86 2.4E-25 T 12-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Alide_0013 b7285c54915f4a6fb93e5c9b243f9514 101 Gene3D G3DSA:3.30.70.100 1 96 5.8E-28 T 12-10-2018 Alide_3426 b05f19327a7ec4ab557fc2b4b6556b35 294 PIRSF PIRSF000388 19 293 1.1E-96 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Alide_3426 b05f19327a7ec4ab557fc2b4b6556b35 294 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 27 293 40.594 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Alide_3426 b05f19327a7ec4ab557fc2b4b6556b35 294 SUPERFAMILY SSF51621 28 289 9.81E-97 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_3426 b05f19327a7ec4ab557fc2b4b6556b35 294 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 32 289 3.5E-93 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Alide_3426 b05f19327a7ec4ab557fc2b4b6556b35 294 Pfam PF02548 Ketopantoate hydroxymethyltransferase 28 287 3.5E-105 T 12-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Alide_3426 b05f19327a7ec4ab557fc2b4b6556b35 294 Gene3D G3DSA:3.20.20.60 26 294 7.3E-104 T 12-10-2018 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 Pfam PF02803 Thiolase, C-terminal domain 272 392 9.7E-43 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 SUPERFAMILY SSF53901 273 393 3.98E-40 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 PIRSF PIRSF000429 1 394 1.1E-109 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 Gene3D G3DSA:3.40.47.10 135 388 1.5E-128 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 SUPERFAMILY SSF53901 1 268 4.78E-59 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 Gene3D G3DSA:3.40.47.10 7 277 1.5E-128 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 392 1.2E-113 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 Pfam PF00108 Thiolase, N-terminal domain 5 262 5.7E-50 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_3281 5e1926af4dd05d971c33cebfab188def 394 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 Alide_4404 73ccd6521d9183a3e673e86d372087ee 295 SUPERFAMILY SSF53850 6 267 1.13E-64 T 12-10-2018 Alide_4404 73ccd6521d9183a3e673e86d372087ee 295 Gene3D G3DSA:3.40.190.10 128 223 1.8E-97 T 12-10-2018 Alide_4404 73ccd6521d9183a3e673e86d372087ee 295 SMART SM00062 34 266 1.6E-58 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_4404 73ccd6521d9183a3e673e86d372087ee 295 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 263 1.9E-48 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_4404 73ccd6521d9183a3e673e86d372087ee 295 Gene3D G3DSA:3.40.190.10 23 269 1.8E-97 T 12-10-2018 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 342 361 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 382 3.6E-36 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 Gene3D G3DSA:1.20.140.10 239 388 3.2E-39 T 12-10-2018 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 PIRSF PIRSF016578 135 201 3.3E-4 T 12-10-2018 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 PIRSF PIRSF016578 242 387 4.9E-10 T 12-10-2018 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 PIRSF PIRSF016578 6 85 0.0022 T 12-10-2018 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 Gene3D G3DSA:1.10.540.10 1 121 2.5E-27 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 SUPERFAMILY SSF56645 1 231 3.01E-61 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 222 9.8E-25 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 Gene3D G3DSA:2.40.110.10 123 238 4.1E-32 T 12-10-2018 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 120 2.1E-22 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2404 1b6d3da3511e1013d2d339c55d25a476 390 SUPERFAMILY SSF47203 234 388 6.12E-43 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 Gene3D G3DSA:3.30.70.1440 668 862 2.1E-260 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 Gene3D G3DSA:3.30.70.1430 566 666 2.1E-260 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 Gene3D G3DSA:1.20.1640.10 14 511 2.1E-260 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 SUPERFAMILY SSF82714 185 266 4.71E-14 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2799 e329b5abf435531884fe8d99d9915436 1039 SUPERFAMILY SSF82866 294 501 4.84E-34 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 Gene3D G3DSA:3.30.70.1430 42 812 2.1E-260 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1029 3.9E-232 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 Gene3D G3DSA:3.30.70.1320 135 327 2.1E-260 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 SUPERFAMILY SSF82693 563 654 7.32E-5 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 Gene3D G3DSA:1.20.1640.10 512 1020 2.1E-260 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 SUPERFAMILY SSF82693 140 319 1.39E-16 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 Gene3D G3DSA:3.30.2090.10 718 804 2.1E-260 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2799 e329b5abf435531884fe8d99d9915436 1039 Gene3D G3DSA:3.30.2090.10 182 273 2.1E-260 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2799 e329b5abf435531884fe8d99d9915436 1039 SUPERFAMILY SSF82714 717 800 4.84E-12 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2799 e329b5abf435531884fe8d99d9915436 1039 SUPERFAMILY SSF82866 798 1025 1.57E-47 T 12-10-2018 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.3E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 1.3E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.3E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 1.3E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.3E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 PRINTS PR00702 Acriflavin resistance protein family signature 360 381 1.3E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 1.3E-25 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 Pfam PF00873 AcrB/AcrD/AcrF family 8 1022 2.6E-249 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2799 e329b5abf435531884fe8d99d9915436 1039 SUPERFAMILY SSF82693 43 128 3.92E-20 T 12-10-2018 Alide_3344 e0478a0e451b8ce2acb31e7dc41d1710 228 Gene3D G3DSA:3.40.50.300 7 228 1.7E-64 T 12-10-2018 Alide_3344 e0478a0e451b8ce2acb31e7dc41d1710 228 SMART SM00382 38 224 8.7E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3344 e0478a0e451b8ce2acb31e7dc41d1710 228 SUPERFAMILY SSF52540 9 227 3.46E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3344 e0478a0e451b8ce2acb31e7dc41d1710 228 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3344 e0478a0e451b8ce2acb31e7dc41d1710 228 Pfam PF00005 ABC transporter 29 177 1.3E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3344 e0478a0e451b8ce2acb31e7dc41d1710 228 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 9 227 1.9E-93 T 12-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 TIGRFAM TIGR00016 ackA: acetate kinase 7 394 3.8E-103 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 Hamap MF_00020 Acetate kinase [ackA]. 1 402 142.411 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 PRINTS PR00471 Acetate kinase family signature 380 392 2.3E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 PRINTS PR00471 Acetate kinase family signature 177 190 2.3E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 PRINTS PR00471 Acetate kinase family signature 328 344 2.3E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 PRINTS PR00471 Acetate kinase family signature 9 20 2.3E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 PRINTS PR00471 Acetate kinase family signature 206 227 2.3E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 PRINTS PR00471 Acetate kinase family signature 306 319 2.3E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 SUPERFAMILY SSF53067 162 400 6.48E-68 T 12-10-2018 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 PIRSF PIRSF000722 5 401 2.8E-123 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 Gene3D G3DSA:3.30.420.40 7 196 2.9E-54 T 12-10-2018 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 SUPERFAMILY SSF53067 8 199 7.12E-54 T 12-10-2018 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 Pfam PF00871 Acetokinase family 8 392 1.4E-100 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 Gene3D G3DSA:3.30.420.40 201 400 1.5E-63 T 12-10-2018 Alide_2859 8f39b5b4bba1a5c4959c11050310c581 402 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 9 20 - T 12-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 SUPERFAMILY SSF81653 106 202 1.57E-23 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Gene3D G3DSA:1.20.1110.10 46 303 1.1E-79 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Pfam PF00690 Cation transporter/ATPase, N-terminus 12 62 6.9E-8 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 75 325 8.3E-38 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 551 662 4.8E-29 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 SUPERFAMILY SSF56784 305 672 1.7E-54 T 12-10-2018 IPR036412 HAD-like superfamily Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 554 570 1.2E-16 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 614 639 1.2E-16 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 436 454 1.2E-16 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 582 598 1.2E-16 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 582 601 2.9E-39 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 152 166 2.9E-39 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 606 618 2.9E-39 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 307 321 2.9E-39 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 481 492 2.9E-39 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 503 513 2.9E-39 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 309 315 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Pfam PF00122 E1-E2 ATPase 103 286 9.4E-44 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Gene3D G3DSA:2.70.150.10 14 209 1.1E-79 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Gene3D G3DSA:3.40.1110.10 385 488 5.2E-104 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Gene3D G3DSA:3.40.1110.10 317 328 1.1E-79 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Pfam PF00702 haloacid dehalogenase-like hydrolase 303 596 1.6E-28 T 12-10-2018 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 SMART SM00831 5 68 0.0013 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Pfam PF00689 Cation transporting ATPase, C-terminus 666 837 5.0E-19 T 12-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 SUPERFAMILY SSF81665 13 843 6.93E-83 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Gene3D G3DSA:3.40.50.1000 304 316 1.1E-79 T 12-10-2018 IPR023214 HAD superfamily Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Gene3D G3DSA:3.40.50.1000 489 627 5.2E-104 T 12-10-2018 IPR023214 HAD superfamily Alide_4337 cf8e9ebcd185b0fdfb7411714fcdff5d 849 Gene3D G3DSA:1.20.1110.10 628 836 5.2E-104 T 12-10-2018 Alide_3324 f82a67de0c5dd2169f9de8fd56172585 480 Pfam PF12801 4Fe-4S binding domain 101 141 2.3E-10 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3324 f82a67de0c5dd2169f9de8fd56172585 480 Pfam PF13746 4Fe-4S dicluster domain 222 327 5.0E-45 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3324 f82a67de0c5dd2169f9de8fd56172585 480 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 363 479 2.9E-27 T 12-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain Alide_3324 f82a67de0c5dd2169f9de8fd56172585 480 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 45 477 1.3E-155 T 12-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 Alide_3324 f82a67de0c5dd2169f9de8fd56172585 480 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 275 286 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_3324 f82a67de0c5dd2169f9de8fd56172585 480 SUPERFAMILY SSF54862 109 373 2.09E-31 T 12-10-2018 Alide_3324 f82a67de0c5dd2169f9de8fd56172585 480 Gene3D G3DSA:2.60.40.10 364 479 6.5E-26 T 12-10-2018 IPR013783 Immunoglobulin-like fold Alide_1707 bb4475e3e848cd2a133765a85b5e4ee5 130 Gene3D G3DSA:3.30.160.250 1 81 3.3E-19 T 12-10-2018 Alide_1707 bb4475e3e848cd2a133765a85b5e4ee5 130 SUPERFAMILY SSF47598 89 124 7.63E-5 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Alide_1707 bb4475e3e848cd2a133765a85b5e4ee5 130 SUPERFAMILY SSF143100 1 62 2.22E-13 T 12-10-2018 IPR035069 TTHA1013/TTHA0281-like Alide_1707 bb4475e3e848cd2a133765a85b5e4ee5 130 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 122 7.5E-40 T 12-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 SUPERFAMILY SSF55447 396 500 4.19E-33 T 12-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 Gene3D G3DSA:3.30.390.50 397 498 2.6E-28 T 12-10-2018 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 Gene3D G3DSA:3.10.20.30 10 100 4.5E-26 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 51 59 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 SMART SM01092 397 498 7.9E-35 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 Pfam PF01799 [2Fe-2S] binding domain 95 180 8.7E-26 T 12-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 398 497 5.2E-30 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 SUPERFAMILY SSF54292 13 98 6.47E-16 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 14 498 1.8E-199 T 12-10-2018 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259|Reactome: R-HSA-8851680 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 Gene3D G3DSA:3.30.465.10 277 389 3.1E-32 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 SUPERFAMILY SSF56176 217 389 3.27E-51 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 Gene3D G3DSA:3.30.43.10 227 276 2.6E-18 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 226 389 1.7E-49 T 12-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 Gene3D G3DSA:1.10.150.120 111 186 3.5E-30 T 12-10-2018 Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 PIRSF PIRSF036557 11 511 4.1E-218 T 12-10-2018 IPR012175 Xanthine dehydrogenase, small subunit, bacteria Alide_1071 7549d13c85c86ac5a39d7681673d4445 519 SUPERFAMILY SSF47741 116 193 3.93E-29 T 12-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily Alide_0565 4f655ed23ffb8a3f3b1615112f5e101d 313 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0565 4f655ed23ffb8a3f3b1615112f5e101d 313 Gene3D G3DSA:3.40.50.300 2 243 1.4E-67 T 12-10-2018 Alide_0565 4f655ed23ffb8a3f3b1615112f5e101d 313 SMART SM00382 29 226 2.6E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0565 4f655ed23ffb8a3f3b1615112f5e101d 313 Pfam PF00005 ABC transporter 21 169 5.3E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0565 4f655ed23ffb8a3f3b1615112f5e101d 313 SUPERFAMILY SSF52540 4 231 9.15E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1043 1b0f42c0e931099d5bdebe564c2a7f80 334 SUPERFAMILY SSF50129 5 147 3.3E-37 T 12-10-2018 IPR011032 GroES-like superfamily Alide_1043 1b0f42c0e931099d5bdebe564c2a7f80 334 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 105 4.4E-5 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_1043 1b0f42c0e931099d5bdebe564c2a7f80 334 SMART SM00829 14 330 5.1E-48 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_1043 1b0f42c0e931099d5bdebe564c2a7f80 334 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 5 332 2.9E-142 T 12-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 Alide_1043 1b0f42c0e931099d5bdebe564c2a7f80 334 SUPERFAMILY SSF51735 118 294 8.77E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1043 1b0f42c0e931099d5bdebe564c2a7f80 334 Gene3D G3DSA:3.40.50.720 127 269 2.2E-104 T 12-10-2018 Alide_1043 1b0f42c0e931099d5bdebe564c2a7f80 334 Pfam PF00107 Zinc-binding dehydrogenase 158 284 5.6E-32 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_1043 1b0f42c0e931099d5bdebe564c2a7f80 334 Gene3D G3DSA:3.90.180.10 19 330 2.2E-104 T 12-10-2018 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 Gene3D G3DSA:2.40.30.10 110 210 6.4E-24 T 12-10-2018 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 Gene3D G3DSA:3.40.50.80 211 346 4.7E-29 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 Gene3D G3DSA:3.10.20.30 1 104 6.4E-26 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 SUPERFAMILY SSF54292 6 97 1.7E-26 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 140 150 1.5E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 311 319 1.5E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 244 253 1.5E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 156 163 1.5E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 219 238 1.5E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 203 212 5.3E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 244 253 5.3E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 219 238 5.3E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 311 319 5.3E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 140 152 5.3E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 156 163 5.3E-21 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 Pfam PF00175 Oxidoreductase NAD-binding domain 220 324 2.4E-17 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 89 1.4E-13 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 45 53 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 Pfam PF00970 Oxidoreductase FAD-binding domain 114 208 5.2E-14 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 SUPERFAMILY SSF52343 211 345 1.01E-36 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_1414 b54bb0152bfdb31bf7e973d0f9aadde2 353 SUPERFAMILY SSF63380 110 210 1.0E-21 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_0555 23789594d2a764541384c40a3b42d4e6 482 PIRSF PIRSF000654 24 279 3.0E-24 T 12-10-2018 Alide_0555 23789594d2a764541384c40a3b42d4e6 482 SMART SM00220 13 284 5.4E-26 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Alide_0555 23789594d2a764541384c40a3b42d4e6 482 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 144 156 - T 12-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Alide_0555 23789594d2a764541384c40a3b42d4e6 482 SUPERFAMILY SSF52402 351 474 4.77E-13 T 12-10-2018 Alide_0555 23789594d2a764541384c40a3b42d4e6 482 Pfam PF00582 Universal stress protein family 336 472 3.4E-11 T 12-10-2018 IPR006016 UspA Alide_0555 23789594d2a764541384c40a3b42d4e6 482 Gene3D G3DSA:3.30.200.20 1 99 3.8E-7 T 12-10-2018 Alide_0555 23789594d2a764541384c40a3b42d4e6 482 Gene3D G3DSA:1.10.510.10 100 289 3.3E-38 T 12-10-2018 Alide_0555 23789594d2a764541384c40a3b42d4e6 482 SUPERFAMILY SSF56112 10 285 9.44E-54 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_0555 23789594d2a764541384c40a3b42d4e6 482 Pfam PF00069 Protein kinase domain 44 274 3.4E-31 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Alide_0555 23789594d2a764541384c40a3b42d4e6 482 Gene3D G3DSA:3.40.50.620 335 472 1.6E-11 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_0409 478b34c618fc4d375c93474acba69f77 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.9E-34 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Alide_0409 478b34c618fc4d375c93474acba69f77 396 Gene3D G3DSA:2.40.30.10 340 395 2.9E-29 T 12-10-2018 Alide_0409 478b34c618fc4d375c93474acba69f77 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 1.7E-18 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Alide_0409 478b34c618fc4d375c93474acba69f77 396 SUPERFAMILY SSF50465 304 396 6.48E-37 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Alide_0409 478b34c618fc4d375c93474acba69f77 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 8.0E-16 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_0409 478b34c618fc4d375c93474acba69f77 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 7.2E-231 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Alide_0409 478b34c618fc4d375c93474acba69f77 396 Gene3D G3DSA:3.40.50.300 1 205 9.3E-71 T 12-10-2018 Alide_0409 478b34c618fc4d375c93474acba69f77 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site Alide_0409 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0409 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0409 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0409 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0409 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0409 478b34c618fc4d375c93474acba69f77 396 Gene3D G3DSA:2.40.30.10 208 336 4.6E-54 T 12-10-2018 Alide_0409 478b34c618fc4d375c93474acba69f77 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.617 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Alide_0409 478b34c618fc4d375c93474acba69f77 396 SUPERFAMILY SSF52540 5 221 1.12E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0409 478b34c618fc4d375c93474acba69f77 396 SUPERFAMILY SSF50447 207 303 1.81E-31 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_0409 478b34c618fc4d375c93474acba69f77 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.8E-59 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0455 478b34c618fc4d375c93474acba69f77 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.9E-34 T 12-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Alide_0455 478b34c618fc4d375c93474acba69f77 396 Gene3D G3DSA:2.40.30.10 340 395 2.9E-29 T 12-10-2018 Alide_0455 478b34c618fc4d375c93474acba69f77 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 1.7E-18 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Alide_0455 478b34c618fc4d375c93474acba69f77 396 SUPERFAMILY SSF50465 304 396 6.48E-37 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Alide_0455 478b34c618fc4d375c93474acba69f77 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 8.0E-16 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_0455 478b34c618fc4d375c93474acba69f77 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 7.2E-231 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Alide_0455 478b34c618fc4d375c93474acba69f77 396 Gene3D G3DSA:3.40.50.300 1 205 9.3E-71 T 12-10-2018 Alide_0455 478b34c618fc4d375c93474acba69f77 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site Alide_0455 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0455 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0455 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0455 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0455 478b34c618fc4d375c93474acba69f77 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0455 478b34c618fc4d375c93474acba69f77 396 Gene3D G3DSA:2.40.30.10 208 336 4.6E-54 T 12-10-2018 Alide_0455 478b34c618fc4d375c93474acba69f77 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.617 T 12-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Alide_0455 478b34c618fc4d375c93474acba69f77 396 SUPERFAMILY SSF52540 5 221 1.12E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0455 478b34c618fc4d375c93474acba69f77 396 SUPERFAMILY SSF50447 207 303 1.81E-31 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_0455 478b34c618fc4d375c93474acba69f77 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.8E-59 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 Gene3D G3DSA:3.10.20.30 48 362 7.5E-153 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 SUPERFAMILY SSF81271 280 360 8.5E-35 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 Gene3D G3DSA:1.10.150.300 113 201 7.5E-153 T 12-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 364 44.254 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 Pfam PF06071 Protein of unknown function (DUF933) 280 363 1.3E-38 T 12-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 Pfam PF01926 50S ribosome-binding GTPase 5 115 1.4E-22 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 364 6.0E-154 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 Gene3D G3DSA:3.40.50.300 3 279 7.5E-153 T 12-10-2018 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 SUPERFAMILY SSF52540 3 302 3.88E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 PIRSF PIRSF006641 1 364 9.6E-154 T 12-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.7E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.7E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.7E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3648 50e02a55815c6a77f9ddaabe9a0add8a 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.7E-34 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_0924 1b0ee9fdbcd7170b69e5000afe2c08fe 529 Gene3D G3DSA:1.10.150.130 99 240 3.9E-6 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_0924 1b0ee9fdbcd7170b69e5000afe2c08fe 529 SUPERFAMILY SSF56349 142 261 2.12E-12 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_0924 1b0ee9fdbcd7170b69e5000afe2c08fe 529 Pfam PF00589 Phage integrase family 313 446 8.1E-18 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_0924 1b0ee9fdbcd7170b69e5000afe2c08fe 529 SUPERFAMILY SSF56349 300 452 2.06E-31 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_0924 1b0ee9fdbcd7170b69e5000afe2c08fe 529 Gene3D G3DSA:1.10.443.10 292 460 5.3E-26 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_3935 7b49d9acdcc31e18f314527809273a3d 158 Gene3D G3DSA:3.40.50.620 1 143 1.4E-32 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3935 7b49d9acdcc31e18f314527809273a3d 158 Pfam PF00582 Universal stress protein family 3 141 2.2E-27 T 12-10-2018 IPR006016 UspA Alide_3935 7b49d9acdcc31e18f314527809273a3d 158 SUPERFAMILY SSF52402 3 143 1.67E-33 T 12-10-2018 Alide_3935 7b49d9acdcc31e18f314527809273a3d 158 PRINTS PR01438 Universal stress protein signature 119 141 1.2E-15 T 12-10-2018 IPR006015 Universal stress protein A Alide_3935 7b49d9acdcc31e18f314527809273a3d 158 PRINTS PR01438 Universal stress protein signature 1 18 1.2E-15 T 12-10-2018 IPR006015 Universal stress protein A Alide_3935 7b49d9acdcc31e18f314527809273a3d 158 PRINTS PR01438 Universal stress protein signature 101 113 1.2E-15 T 12-10-2018 IPR006015 Universal stress protein A Alide_2013 7cb1ceba825b4f3a4d954a95556f7ec5 114 SUPERFAMILY SSF54292 24 103 2.36E-19 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_2013 7cb1ceba825b4f3a4d954a95556f7ec5 114 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 22 102 1.1E-29 T 12-10-2018 Alide_2013 7cb1ceba825b4f3a4d954a95556f7ec5 114 Gene3D G3DSA:3.10.20.440 12 106 4.5E-19 T 12-10-2018 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Gene3D G3DSA:3.30.56.10 409 482 4.0E-23 T 12-10-2018 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 808 42.016 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Gene3D G3DSA:3.30.70.380 710 814 1.7E-18 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Gene3D G3DSA:2.40.50.140 39 159 8.2E-68 T 12-10-2018 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Pfam PF03147 Ferredoxin-fold anticodon binding domain 710 814 1.3E-22 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Gene3D G3DSA:3.30.56.10 5 186 8.2E-68 T 12-10-2018 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 SUPERFAMILY SSF55681 473 698 3.38E-48 T 12-10-2018 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 SMART SM00874 409 477 2.8E-24 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 SMART SM00896 709 814 3.7E-30 T 12-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 814 6.1E-217 T 12-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Pfam PF01588 Putative tRNA binding domain 45 150 1.6E-24 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 SUPERFAMILY SSF56037 202 391 8.37E-66 T 12-10-2018 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Gene3D G3DSA:3.50.40.10 202 397 2.1E-68 T 12-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Pfam PF03483 B3/4 domain 218 390 4.0E-61 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 SUPERFAMILY SSF50249 37 198 1.52E-46 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 SUPERFAMILY SSF54991 704 814 3.01E-16 T 12-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 SUPERFAMILY SSF46955 411 481 1.83E-17 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Gene3D G3DSA:3.30.930.10 493 700 3.5E-57 T 12-10-2018 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 SMART SM00873 217 390 7.8E-80 T 12-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Alide_2508 bdc813f1b975779c7ef274c3d88b2342 814 Pfam PF03484 tRNA synthetase B5 domain 412 477 5.8E-17 T 12-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Alide_1822 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1822 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_1822 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_1822 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1874 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1874 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_1874 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_1874 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_3769 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_3769 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_3769 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_3769 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_2879 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_2879 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_2879 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_2879 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1440 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1440 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_1440 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_1440 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_2711 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_2711 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_2711 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_2711 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1837 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1837 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_1837 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_1837 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1531 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1531 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_1531 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_1531 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_0921 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_0921 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_0921 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_0921 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_2126 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_2126 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_2126 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_2126 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_0725 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_0725 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_0725 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_0725 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1482 0e87f1074f9b538049de90eef08e1caf 304 SUPERFAMILY SSF53098 122 284 7.59E-37 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1482 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF13276 HTH-like domain 47 103 1.1E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_1482 0e87f1074f9b538049de90eef08e1caf 304 Pfam PF00665 Integrase core domain 128 243 2.1E-29 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_1482 0e87f1074f9b538049de90eef08e1caf 304 Gene3D G3DSA:3.30.420.10 124 275 7.7E-13 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_0075 c88a8ed93dbf37b99957f8290ca4a004 263 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 170 182 9.7E-15 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_0075 c88a8ed93dbf37b99957f8290ca4a004 263 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 49 62 9.7E-15 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_0075 c88a8ed93dbf37b99957f8290ca4a004 263 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 29 43 9.7E-15 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_0075 c88a8ed93dbf37b99957f8290ca4a004 263 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 8 24 9.7E-15 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_0075 c88a8ed93dbf37b99957f8290ca4a004 263 Gene3D G3DSA:3.40.50.150 6 222 4.7E-43 T 12-10-2018 Alide_0075 c88a8ed93dbf37b99957f8290ca4a004 263 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 8 181 3.3E-21 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_0075 c88a8ed93dbf37b99957f8290ca4a004 263 SUPERFAMILY SSF53335 1 254 4.15E-59 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0075 c88a8ed93dbf37b99957f8290ca4a004 263 Gene3D G3DSA:1.10.1020.10 56 149 4.7E-43 T 12-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 Alide_0075 c88a8ed93dbf37b99957f8290ca4a004 263 PIRSF PIRSF000398 1 257 3.1E-41 T 12-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 Alide_2397 8d6528998ecad766f7e6699cf7b42733 256 Gene3D G3DSA:3.30.950.10 124 253 1.9E-33 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Alide_2397 8d6528998ecad766f7e6699cf7b42733 256 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 88 121 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Alide_2397 8d6528998ecad766f7e6699cf7b42733 256 Gene3D G3DSA:3.40.1010.10 6 123 3.8E-40 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Alide_2397 8d6528998ecad766f7e6699cf7b42733 256 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 13 27 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Alide_2397 8d6528998ecad766f7e6699cf7b42733 256 SUPERFAMILY SSF53790 7 245 4.19E-67 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Alide_2397 8d6528998ecad766f7e6699cf7b42733 256 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 8 244 6.0E-81 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Alide_2397 8d6528998ecad766f7e6699cf7b42733 256 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 222 9.9E-43 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Alide_1542 811247ab52337b4aaeb089cb8f58d575 591 Gene3D G3DSA:3.40.630.10 330 584 1.3E-20 T 12-10-2018 Alide_1542 811247ab52337b4aaeb089cb8f58d575 591 SUPERFAMILY SSF53187 334 463 6.95E-16 T 12-10-2018 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 240 388 3.7E-41 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 135 228 2.5E-24 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 PIRSF PIRSF016578 249 391 3.4E-10 T 12-10-2018 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 PIRSF PIRSF016578 16 205 7.7E-6 T 12-10-2018 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 Gene3D G3DSA:2.40.110.10 134 244 1.4E-31 T 12-10-2018 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 SUPERFAMILY SSF56645 19 250 2.62E-56 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 Gene3D G3DSA:1.10.540.10 13 131 3.2E-21 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 Gene3D G3DSA:1.20.140.10 245 397 3.2E-44 T 12-10-2018 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 348 367 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 22 131 5.2E-18 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 137 149 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_4347 f2c0dc08e8f5b7c653ae0685d4abfeb2 410 SUPERFAMILY SSF47203 239 393 1.55E-49 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3347 2e49ad283a7ef38ec644629650217170 571 SUPERFAMILY SSF64182 47 465 2.09E-111 T 12-10-2018 IPR038763 DHH phosphoesterase superfamily Alide_3347 2e49ad283a7ef38ec644629650217170 571 Gene3D G3DSA:3.10.310.30 326 459 1.4E-29 T 12-10-2018 Alide_3347 2e49ad283a7ef38ec644629650217170 571 Pfam PF01368 DHH family 75 200 2.2E-8 T 12-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Alide_3347 2e49ad283a7ef38ec644629650217170 571 Gene3D G3DSA:3.90.1640.30 48 323 2.1E-83 T 12-10-2018 Alide_3347 2e49ad283a7ef38ec644629650217170 571 Pfam PF02272 DHHA1 domain 319 452 5.5E-18 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Alide_3347 2e49ad283a7ef38ec644629650217170 571 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 22 567 8.7E-137 T 12-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 Pfam PF09334 tRNA synthetases class I (M) 6 407 1.5E-136 T 12-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 PRINTS PR01041 Methionyl-tRNA synthetase signature 300 315 2.3E-21 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 PRINTS PR01041 Methionyl-tRNA synthetase signature 262 273 2.3E-21 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 PRINTS PR01041 Methionyl-tRNA synthetase signature 8 21 2.3E-21 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 PRINTS PR01041 Methionyl-tRNA synthetase signature 395 406 2.3E-21 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 PRINTS PR01041 Methionyl-tRNA synthetase signature 40 54 2.3E-21 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 PRINTS PR01041 Methionyl-tRNA synthetase signature 88 99 2.3E-21 T 12-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 SUPERFAMILY SSF47323 397 597 1.76E-37 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 Gene3D G3DSA:2.20.28.20 140 174 1.1E-136 T 12-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 571 688 1.1E-37 T 12-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 SUPERFAMILY SSF50249 578 688 4.16E-28 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_3405 3ea77099638b08f42689326e832a1ec0 689 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 524 1.5E-154 T 12-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 Gene3D G3DSA:1.10.730.10 400 539 3.1E-30 T 12-10-2018 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 Pfam PF01588 Putative tRNA binding domain 589 675 1.4E-21 T 12-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 SUPERFAMILY SSF52374 4 397 7.74E-90 T 12-10-2018 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 Gene3D G3DSA:2.40.50.140 573 689 9.1E-33 T 12-10-2018 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 Gene3D G3DSA:3.40.50.620 6 395 1.1E-136 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3405 3ea77099638b08f42689326e832a1ec0 689 SUPERFAMILY SSF57770 140 174 1.83E-12 T 12-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 Hamap MF_00098 Methionine--tRNA ligase [metG]. 4 559 36.79 T 12-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_3405 3ea77099638b08f42689326e832a1ec0 689 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 13 24 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0926 7633b8a973f2a209725420bba9334db3 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 2.3E-36 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0926 7633b8a973f2a209725420bba9334db3 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.445 T 12-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0926 7633b8a973f2a209725420bba9334db3 103 SUPERFAMILY SSF141091 1 101 2.35E-37 T 12-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0926 7633b8a973f2a209725420bba9334db3 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 12-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0926 7633b8a973f2a209725420bba9334db3 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 3.2E-40 T 12-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0493 6685a57b20d9e4b2a4d86a00c3ae7673 347 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 343 6.0E-150 T 12-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 Alide_0493 6685a57b20d9e4b2a4d86a00c3ae7673 347 Pfam PF00437 Type II/IV secretion system protein 12 268 1.4E-45 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0493 6685a57b20d9e4b2a4d86a00c3ae7673 347 SUPERFAMILY SSF52540 5 335 2.56E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0493 6685a57b20d9e4b2a4d86a00c3ae7673 347 Gene3D G3DSA:3.40.50.300 101 346 5.9E-101 T 12-10-2018 Alide_0493 6685a57b20d9e4b2a4d86a00c3ae7673 347 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0493 6685a57b20d9e4b2a4d86a00c3ae7673 347 Gene3D G3DSA:3.30.450.90 1 100 8.4E-35 T 12-10-2018 Alide_3453 8f6f712b863e05698fa446eda831ec77 312 Pfam PF00701 Dihydrodipicolinate synthetase family 7 306 7.5E-37 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_3453 8f6f712b863e05698fa446eda831ec77 312 SUPERFAMILY SSF51569 5 310 2.09E-66 T 12-10-2018 Alide_3453 8f6f712b863e05698fa446eda831ec77 312 PIRSF PIRSF001365 3 312 1.3E-55 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_3453 8f6f712b863e05698fa446eda831ec77 312 SMART SM01130 6 308 1.5E-67 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_3453 8f6f712b863e05698fa446eda831ec77 312 Gene3D G3DSA:3.20.20.70 6 312 2.8E-68 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2518 38fc22628e6d7f7de85eec7ecbed0683 93 Pfam PF02201 SWIB/MDM2 domain 20 92 1.4E-27 T 12-10-2018 IPR003121 SWIB/MDM2 domain GO:0005515 Alide_2518 38fc22628e6d7f7de85eec7ecbed0683 93 Gene3D G3DSA:1.10.245.10 12 93 9.5E-27 T 12-10-2018 IPR036885 SWIB/MDM2 domain superfamily Alide_2518 38fc22628e6d7f7de85eec7ecbed0683 93 SMART SM00151 18 93 2.8E-28 T 12-10-2018 IPR019835 SWIB domain Reactome: R-HSA-3214858|Reactome: R-HSA-8939243 Alide_2518 38fc22628e6d7f7de85eec7ecbed0683 93 SUPERFAMILY SSF47592 10 92 4.8E-26 T 12-10-2018 IPR036885 SWIB/MDM2 domain superfamily Alide_3609 6661303ad7bb7736510ef75ed5e181a6 566 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 25 455 2.7E-56 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3609 6661303ad7bb7736510ef75ed5e181a6 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 60 83 5.8E-6 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3609 6661303ad7bb7736510ef75ed5e181a6 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 377 396 5.8E-6 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3609 6661303ad7bb7736510ef75ed5e181a6 566 PRINTS PR01165 Cytochrome c oxidase subunit I signature 349 367 5.8E-6 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3609 6661303ad7bb7736510ef75ed5e181a6 566 Gene3D G3DSA:1.20.210.10 12 564 4.2E-92 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3609 6661303ad7bb7736510ef75ed5e181a6 566 SUPERFAMILY SSF81442 23 509 3.92E-63 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3287 6ef182f3ec8cd23a89efea5318837457 134 SUPERFAMILY SSF50249 13 121 1.35E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_3287 6ef182f3ec8cd23a89efea5318837457 134 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 57 115 6.1E-14 T 12-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Alide_2135 ca95c409122828c60ce1da6d9971e7b8 189 Gene3D G3DSA:3.40.630.30 2 165 3.2E-42 T 12-10-2018 Alide_2135 ca95c409122828c60ce1da6d9971e7b8 189 SUPERFAMILY SSF55729 6 156 9.27E-37 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_2135 ca95c409122828c60ce1da6d9971e7b8 189 Pfam PF13302 Acetyltransferase (GNAT) domain 11 154 2.3E-31 T 12-10-2018 IPR000182 GNAT domain Alide_1319 edb39ff23f2f2fcde8eaa7d5fa15c0e0 102 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 74 7.9E-22 T 12-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Alide_1319 edb39ff23f2f2fcde8eaa7d5fa15c0e0 102 SMART SM00360 4 77 1.7E-27 T 12-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Alide_1319 edb39ff23f2f2fcde8eaa7d5fa15c0e0 102 SUPERFAMILY SSF54928 3 101 8.06E-32 T 12-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 Alide_1319 edb39ff23f2f2fcde8eaa7d5fa15c0e0 102 Gene3D G3DSA:3.30.70.330 1 98 1.0E-30 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Alide_2703 e75368804d993c5bdc00c753b5af569b 353 Gene3D G3DSA:3.60.20.10 1 266 3.2E-69 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_2703 e75368804d993c5bdc00c753b5af569b 353 Pfam PF13230 Glutamine amidotransferases class-II 1 268 8.7E-56 T 12-10-2018 IPR026869 Putative glutamine amidotransferase type 2 Alide_2703 e75368804d993c5bdc00c753b5af569b 353 SUPERFAMILY SSF56235 2 190 1.76E-23 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 SUPERFAMILY SSF52343 601 736 4.98E-28 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 Pfam PF00175 Oxidoreductase NAD-binding domain 607 708 7.5E-10 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 Pfam PF00258 Flavodoxin 339 458 4.2E-14 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 Pfam PF00970 Oxidoreductase FAD-binding domain 532 585 8.9E-5 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 Pfam PF03929 PepSY-associated TM region 8 318 1.3E-36 T 12-10-2018 IPR005625 PepSY-associated TM protein Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 SUPERFAMILY SSF63380 517 599 2.17E-16 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 Gene3D G3DSA:3.40.50.80 596 736 7.0E-29 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 SUPERFAMILY SSF52218 334 482 1.28E-30 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 Gene3D G3DSA:3.40.50.360 323 481 1.7E-23 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 Gene3D G3DSA:2.40.30.10 516 588 1.8E-9 T 12-10-2018 Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 641 652 6.2E-8 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 531 541 6.2E-8 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 606 625 6.2E-8 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_4333 ffb9e48f0ec5c9aecff781aa8839c427 736 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 548 555 6.2E-8 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_0826 df1498518ab0ed1a5097fa3a7e925230 326 Gene3D G3DSA:3.40.190.10 128 250 3.8E-101 T 12-10-2018 Alide_0826 df1498518ab0ed1a5097fa3a7e925230 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 321 3.9E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0826 df1498518ab0ed1a5097fa3a7e925230 326 PIRSF PIRSF017082 1 325 1.3E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0826 df1498518ab0ed1a5097fa3a7e925230 326 Gene3D G3DSA:3.40.190.150 30 315 3.8E-101 T 12-10-2018 Alide_0826 df1498518ab0ed1a5097fa3a7e925230 326 SUPERFAMILY SSF53850 114 287 2.26E-12 T 12-10-2018 Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 SUPERFAMILY SSF46955 16 139 1.25E-37 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 ProSitePatterns PS00552 MerR-type HTH domain signature. 17 39 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 Gene3D G3DSA:1.10.1660.10 8 138 8.0E-38 T 12-10-2018 Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 15 139 3.9E-46 T 12-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 SMART SM00422 14 83 8.9E-30 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 Pfam PF00376 MerR family regulatory protein 16 52 4.0E-13 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 Pfam PF09278 MerR, DNA binding 57 121 1.4E-20 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 50 70 5.1E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 26 39 5.1E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_0035 4b7b696cf1727f78c37ef0e8e38020f9 145 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 26 5.1E-12 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PRINTS PR00477 Phosphoglycerate kinase family signature 191 210 7.6E-79 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PRINTS PR00477 Phosphoglycerate kinase family signature 369 386 7.6E-79 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PRINTS PR00477 Phosphoglycerate kinase family signature 313 338 7.6E-79 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PRINTS PR00477 Phosphoglycerate kinase family signature 109 124 7.6E-79 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PRINTS PR00477 Phosphoglycerate kinase family signature 137 159 7.6E-79 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PRINTS PR00477 Phosphoglycerate kinase family signature 14 30 7.6E-79 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PRINTS PR00477 Phosphoglycerate kinase family signature 36 58 7.6E-79 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PRINTS PR00477 Phosphoglycerate kinase family signature 168 190 7.6E-79 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PRINTS PR00477 Phosphoglycerate kinase family signature 346 357 7.6E-79 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 PIRSF PIRSF000724 3 396 2.4E-132 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 SUPERFAMILY SSF53748 14 393 1.41E-136 T 12-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 393 38.305 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 19 29 - T 12-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 Gene3D G3DSA:3.40.50.1260 170 383 4.7E-142 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 Pfam PF00162 Phosphoglycerate kinase 15 383 8.3E-137 T 12-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4275 1f44f6a49c27449b9d226f2ba106be31 397 Gene3D G3DSA:3.40.50.1260 15 391 4.7E-142 T 12-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_3370 660b63a77bb6bdc9e78e26560be5c2de 189 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 17 176 4.3E-46 T 12-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 Alide_3370 660b63a77bb6bdc9e78e26560be5c2de 189 SUPERFAMILY SSF52016 17 176 3.34E-35 T 12-10-2018 Alide_3370 660b63a77bb6bdc9e78e26560be5c2de 189 Gene3D G3DSA:3.20.19.10 14 187 4.9E-43 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Alide_3370 660b63a77bb6bdc9e78e26560be5c2de 189 Pfam PF00694 Aconitase C-terminal domain 65 111 1.4E-14 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Alide_3108 3c1870d48570d88468a310a0b403dab7 417 Gene3D G3DSA:3.40.630.10 28 414 1.3E-83 T 12-10-2018 Alide_3108 3c1870d48570d88468a310a0b403dab7 417 Pfam PF01546 Peptidase family M20/M25/M40 90 413 1.9E-26 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_3108 3c1870d48570d88468a310a0b403dab7 417 Gene3D G3DSA:3.30.70.360 196 323 1.3E-83 T 12-10-2018 Alide_3108 3c1870d48570d88468a310a0b403dab7 417 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 89 98 - T 12-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Alide_3108 3c1870d48570d88468a310a0b403dab7 417 Pfam PF07687 Peptidase dimerisation domain 192 300 9.8E-20 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_3108 3c1870d48570d88468a310a0b403dab7 417 SUPERFAMILY SSF55031 196 306 7.98E-24 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_3108 3c1870d48570d88468a310a0b403dab7 417 SUPERFAMILY SSF53187 4 416 1.04E-52 T 12-10-2018 Alide_4123 a5ebbac119cf9dbb76328fc66f36a287 317 SUPERFAMILY SSF75138 10 139 3.4E-31 T 12-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Alide_4123 a5ebbac119cf9dbb76328fc66f36a287 317 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 5 315 36.287 T 12-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Alide_4123 a5ebbac119cf9dbb76328fc66f36a287 317 Gene3D G3DSA:3.40.50.300 139 316 1.3E-62 T 12-10-2018 Alide_4123 a5ebbac119cf9dbb76328fc66f36a287 317 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 15 311 8.9E-98 T 12-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Alide_4123 a5ebbac119cf9dbb76328fc66f36a287 317 Pfam PF07475 HPr Serine kinase C-terminal domain 138 307 1.8E-62 T 12-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Alide_4123 a5ebbac119cf9dbb76328fc66f36a287 317 Pfam PF02603 HPr Serine kinase N terminus 11 135 3.9E-22 T 12-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Alide_4123 a5ebbac119cf9dbb76328fc66f36a287 317 SUPERFAMILY SSF53795 140 308 1.01E-33 T 12-10-2018 Alide_4123 a5ebbac119cf9dbb76328fc66f36a287 317 Gene3D G3DSA:3.40.1390.20 10 138 3.7E-23 T 12-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Alide_0346 e88bbce5d26b58afd90084ce4031eb4c 290 SUPERFAMILY SSF51556 18 287 1.62E-64 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_0346 e88bbce5d26b58afd90084ce4031eb4c 290 Gene3D G3DSA:3.20.20.140 9 288 3.4E-73 T 12-10-2018 Alide_0346 e88bbce5d26b58afd90084ce4031eb4c 290 Pfam PF04909 Amidohydrolase 23 287 4.2E-34 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_4300 b23b830d9541ed268c038006a9d2a80e 362 Pfam PF04303 PrpF protein 4 357 5.6E-119 T 12-10-2018 IPR007400 PrpF protein Alide_4300 b23b830d9541ed268c038006a9d2a80e 362 SUPERFAMILY SSF54506 173 358 3.45E-55 T 12-10-2018 Alide_4300 b23b830d9541ed268c038006a9d2a80e 362 Gene3D G3DSA:3.10.310.10 169 341 2.7E-117 T 12-10-2018 Alide_4300 b23b830d9541ed268c038006a9d2a80e 362 SUPERFAMILY SSF54506 3 168 7.06E-64 T 12-10-2018 Alide_4300 b23b830d9541ed268c038006a9d2a80e 362 Gene3D G3DSA:3.10.310.10 5 355 2.7E-117 T 12-10-2018 Alide_3514 6d8a9883520e2c58a06de442a6115e40 231 Gene3D G3DSA:3.40.1080.10 1 225 1.1E-78 T 12-10-2018 Alide_3514 6d8a9883520e2c58a06de442a6115e40 231 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 219 1.4E-113 T 12-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 Alide_3514 6d8a9883520e2c58a06de442a6115e40 231 SUPERFAMILY SSF100950 2 223 1.05E-76 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_3514 6d8a9883520e2c58a06de442a6115e40 231 Pfam PF01144 Coenzyme A transferase 8 218 2.3E-66 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Alide_3514 6d8a9883520e2c58a06de442a6115e40 231 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 12-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 Alide_3514 6d8a9883520e2c58a06de442a6115e40 231 SMART SM00882 6 219 3.8E-79 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 Gene3D G3DSA:3.40.50.261 289 453 2.3E-41 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 Pfam PF00583 Acetyltransferase (GNAT) family 807 883 5.3E-9 T 12-10-2018 IPR000182 GNAT domain Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 SUPERFAMILY SSF56059 482 699 1.51E-39 T 12-10-2018 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 Gene3D G3DSA:3.40.630.30 720 898 3.1E-43 T 12-10-2018 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 SUPERFAMILY SSF55729 739 887 4.97E-23 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 SUPERFAMILY SSF52210 290 447 1.44E-35 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 SUPERFAMILY SSF51735 51 126 1.18E-7 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 Gene3D G3DSA:3.30.1490.20 500 577 1.5E-77 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 Gene3D G3DSA:3.40.50.261 126 286 4.2E-52 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 148 284 8.6E-51 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 Gene3D G3DSA:3.30.470.20 482 693 1.5E-77 T 12-10-2018 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 Pfam PF13549 ATP-grasp domain 474 695 3.4E-82 T 12-10-2018 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 Gene3D G3DSA:3.40.50.720 5 125 5.6E-11 T 12-10-2018 Alide_2590 a3abac53b26cd70a2c0140a2d245bd53 901 SUPERFAMILY SSF52210 125 289 3.14E-40 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 Pfam PF03144 Elongation factor Tu domain 2 223 294 4.6E-8 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 SUPERFAMILY SSF54980 307 392 4.68E-14 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 Pfam PF00679 Elongation factor G C-terminus 402 484 6.8E-19 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 Gene3D G3DSA:3.40.50.300 1 201 2.5E-62 T 12-10-2018 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 Gene3D G3DSA:3.30.70.240 394 486 3.5E-125 T 12-10-2018 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 PRINTS PR00315 GTP-binding elongation factor signature 87 98 1.0E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 PRINTS PR00315 GTP-binding elongation factor signature 123 132 1.0E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 PRINTS PR00315 GTP-binding elongation factor signature 7 20 1.0E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 PRINTS PR00315 GTP-binding elongation factor signature 51 59 1.0E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 PRINTS PR00315 GTP-binding elongation factor signature 71 81 1.0E-15 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 SUPERFAMILY SSF54980 403 517 7.19E-28 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 SUPERFAMILY SSF50447 151 304 2.21E-30 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 603 7.2E-275 T 12-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 SUPERFAMILY SSF52540 3 211 2.28E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 136 1.1E-24 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 Gene3D G3DSA:3.30.70.870 311 594 3.5E-125 T 12-10-2018 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 Gene3D G3DSA:2.40.30.10 204 304 1.4E-28 T 12-10-2018 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 Pfam PF00009 Elongation factor Tu GTP binding domain 3 200 2.1E-55 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1943 7df4b18f5ec92a0d6420cf0ed6135947 609 Gene3D G3DSA:2.40.50.250 487 603 3.5E-125 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1038 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 Gene3D G3DSA:1.20.1640.10 520 1024 0.0 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 Gene3D G3DSA:3.30.70.1440 671 867 0.0 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 Gene3D G3DSA:3.30.70.1430 574 670 0.0 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 SUPERFAMILY SSF82693 136 330 1.31E-21 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 SUPERFAMILY SSF82866 808 1029 1.44E-43 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 SUPERFAMILY SSF82866 296 497 2.49E-49 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 Gene3D G3DSA:3.30.2090.10 723 811 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 Gene3D G3DSA:1.20.1640.10 8 519 0.0 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 SUPERFAMILY SSF82693 572 673 5.23E-23 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 Pfam PF00873 AcrB/AcrD/AcrF family 1 1028 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 SUPERFAMILY SSF82693 38 130 2.09E-24 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 SUPERFAMILY SSF82714 182 271 4.97E-18 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 Gene3D G3DSA:3.30.70.1430 38 819 0.0 T 12-10-2018 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 8.0E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 8.0E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 8.0E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 8.0E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 8.0E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 8.0E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 PRINTS PR00702 Acriflavin resistance protein family signature 623 637 8.0E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 PRINTS PR00702 Acriflavin resistance protein family signature 559 576 8.0E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 8.0E-102 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2389 ed20b4d80ab03d11f7926a33f3cef440 1047 SUPERFAMILY SSF82714 725 810 1.7E-20 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Pfam PF01624 MutS domain I 10 122 2.0E-39 T 12-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 SUPERFAMILY SSF55271 4 117 4.05E-41 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Gene3D G3DSA:3.30.420.110 131 273 9.9E-24 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Pfam PF05190 MutS family domain IV 441 532 1.2E-28 T 12-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 705 721 - T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 9 866 1.6E-297 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 9 861 22.912 T 12-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Pfam PF00488 MutS domain V 627 814 7.3E-80 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Gene3D G3DSA:1.10.1420.10 280 573 1.6E-90 T 12-10-2018 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 SUPERFAMILY SSF53150 116 277 1.06E-29 T 12-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Gene3D G3DSA:1.10.1420.10 413 548 1.6E-90 T 12-10-2018 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 SUPERFAMILY SSF52540 580 814 1.78E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 SUPERFAMILY SSF48334 279 578 1.57E-79 T 12-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Pfam PF05192 MutS domain III 280 572 2.0E-32 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Gene3D G3DSA:3.40.50.300 583 830 1.1E-92 T 12-10-2018 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 SMART SM00534 624 811 2.8E-105 T 12-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 PIRSF PIRSF037677 2 828 3.1E-141 T 12-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Gene3D G3DSA:3.40.1170.10 2 123 5.0E-48 T 12-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 Pfam PF05188 MutS domain II 130 263 1.3E-14 T 12-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Alide_3057 00dd54cf3f4fdc2a7f127421a4eca8b5 870 SMART SM00533 294 604 2.9E-81 T 12-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Alide_2220 e5f259804c9a7faf59ec30d55a2fe867 229 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 13 224 8.8E-65 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Alide_2220 e5f259804c9a7faf59ec30d55a2fe867 229 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 55 223 5.0E-57 T 12-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Alide_2220 e5f259804c9a7faf59ec30d55a2fe867 229 Gene3D G3DSA:3.40.50.1360 19 220 5.0E-71 T 12-10-2018 Alide_2220 e5f259804c9a7faf59ec30d55a2fe867 229 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 9 227 32.565 T 12-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 Alide_2220 e5f259804c9a7faf59ec30d55a2fe867 229 SUPERFAMILY SSF75445 132 208 1.96E-21 T 12-10-2018 Alide_2220 e5f259804c9a7faf59ec30d55a2fe867 229 Gene3D G3DSA:3.30.70.260 131 206 5.0E-71 T 12-10-2018 Alide_2220 e5f259804c9a7faf59ec30d55a2fe867 229 SUPERFAMILY SSF100950 9 153 7.85E-44 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_3240 a37169ce25e7a84306d9e4418cf9f97e 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3240 a37169ce25e7a84306d9e4418cf9f97e 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3240 a37169ce25e7a84306d9e4418cf9f97e 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3240 a37169ce25e7a84306d9e4418cf9f97e 317 Gene3D G3DSA:3.40.190.290 95 299 2.2E-32 T 12-10-2018 Alide_3240 a37169ce25e7a84306d9e4418cf9f97e 317 SUPERFAMILY SSF46785 8 115 2.24E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3240 a37169ce25e7a84306d9e4418cf9f97e 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 4.9E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3240 a37169ce25e7a84306d9e4418cf9f97e 317 SUPERFAMILY SSF53850 95 301 1.02E-34 T 12-10-2018 Alide_3240 a37169ce25e7a84306d9e4418cf9f97e 317 Pfam PF03466 LysR substrate binding domain 93 298 4.7E-36 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3240 a37169ce25e7a84306d9e4418cf9f97e 317 Gene3D G3DSA:1.10.10.10 6 93 8.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0705 f043473e9e5eb4462fc34dac35a9dc10 172 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 30 122 1.6E-38 T 12-10-2018 IPR012997 Rare lipoprotein A Alide_0705 f043473e9e5eb4462fc34dac35a9dc10 172 SUPERFAMILY SSF50685 30 115 1.53E-11 T 12-10-2018 IPR036908 RlpA-like domain superfamily Alide_0705 f043473e9e5eb4462fc34dac35a9dc10 172 Pfam PF03330 Lytic transglycolase 28 116 3.9E-25 T 12-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain Alide_0705 f043473e9e5eb4462fc34dac35a9dc10 172 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 1 120 21.839 T 12-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 Alide_0705 f043473e9e5eb4462fc34dac35a9dc10 172 Gene3D G3DSA:2.40.40.10 28 120 6.4E-34 T 12-10-2018 IPR036908 RlpA-like domain superfamily Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 Pfam PF03466 LysR substrate binding domain 87 294 8.4E-36 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.5E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 Gene3D G3DSA:3.40.190.10 161 267 7.7E-38 T 12-10-2018 Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.8E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 SUPERFAMILY SSF53850 87 295 5.16E-37 T 12-10-2018 Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 Gene3D G3DSA:1.10.10.10 1 92 4.1E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 SUPERFAMILY SSF46785 1 87 4.39E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3428 03d0c278ac23c246d94b5949ba7e8729 296 Gene3D G3DSA:3.40.190.10 93 288 7.7E-38 T 12-10-2018 Alide_3083 ca5ace75f52a2f37303323b22b673115 199 SUPERFAMILY SSF160387 74 192 5.75E-29 T 12-10-2018 Alide_3083 ca5ace75f52a2f37303323b22b673115 199 Pfam PF05573 NosL 52 185 9.4E-24 T 12-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL Alide_3083 ca5ace75f52a2f37303323b22b673115 199 Gene3D G3DSA:3.30.70.2050 139 197 2.9E-10 T 12-10-2018 Alide_2170 f0c3e348275eeed588c6135a83cab261 366 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 3 360 1.7E-107 T 12-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 Alide_2170 f0c3e348275eeed588c6135a83cab261 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 357 9.5E-64 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Alide_1881 ebaed2420eb53d31eb0bd874a6b490ff 395 Pfam PF01546 Peptidase family M20/M25/M40 76 391 2.3E-33 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_1881 ebaed2420eb53d31eb0bd874a6b490ff 395 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 382 2.0E-111 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_1881 ebaed2420eb53d31eb0bd874a6b490ff 395 SUPERFAMILY SSF53187 5 394 1.69E-88 T 12-10-2018 Alide_1881 ebaed2420eb53d31eb0bd874a6b490ff 395 Gene3D G3DSA:3.30.70.360 187 301 3.9E-135 T 12-10-2018 Alide_1881 ebaed2420eb53d31eb0bd874a6b490ff 395 Pfam PF07687 Peptidase dimerisation domain 193 285 1.3E-9 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_1881 ebaed2420eb53d31eb0bd874a6b490ff 395 SUPERFAMILY SSF55031 189 301 4.32E-31 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_1881 ebaed2420eb53d31eb0bd874a6b490ff 395 PIRSF PIRSF005962 1 395 8.8E-126 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_1881 ebaed2420eb53d31eb0bd874a6b490ff 395 Gene3D G3DSA:3.40.630.10 18 378 3.9E-135 T 12-10-2018 Alide_2270 542e47e601de345ec65e09e7b04baa5e 392 Pfam PF07687 Peptidase dimerisation domain 188 295 8.1E-25 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_2270 542e47e601de345ec65e09e7b04baa5e 392 Gene3D G3DSA:3.30.70.360 192 305 4.2E-125 T 12-10-2018 Alide_2270 542e47e601de345ec65e09e7b04baa5e 392 SUPERFAMILY SSF55031 192 301 3.74E-31 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_2270 542e47e601de345ec65e09e7b04baa5e 392 Gene3D G3DSA:3.40.630.10 8 375 4.2E-125 T 12-10-2018 Alide_2270 542e47e601de345ec65e09e7b04baa5e 392 SUPERFAMILY SSF53187 8 386 2.62E-62 T 12-10-2018 Alide_2270 542e47e601de345ec65e09e7b04baa5e 392 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 8 386 1.1E-151 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 Alide_2270 542e47e601de345ec65e09e7b04baa5e 392 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 388 51.472 T 12-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 Alide_2270 542e47e601de345ec65e09e7b04baa5e 392 Pfam PF01546 Peptidase family M20/M25/M40 76 385 2.0E-44 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_2569 2c5af6dabfaaf9791f49253c5e76c177 303 Pfam PF00701 Dihydrodipicolinate synthetase family 12 298 2.4E-51 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2569 2c5af6dabfaaf9791f49253c5e76c177 303 Gene3D G3DSA:3.20.20.70 1 301 1.4E-94 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2569 2c5af6dabfaaf9791f49253c5e76c177 303 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 10 301 44.056 T 12-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 Alide_2569 2c5af6dabfaaf9791f49253c5e76c177 303 TIGRFAM TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase 3 300 4.4E-129 T 12-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 Alide_2569 2c5af6dabfaaf9791f49253c5e76c177 303 PIRSF PIRSF001365 7 302 6.9E-56 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2569 2c5af6dabfaaf9791f49253c5e76c177 303 SMART SM01130 10 301 1.2E-77 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2569 2c5af6dabfaaf9791f49253c5e76c177 303 SUPERFAMILY SSF51569 10 299 1.15E-67 T 12-10-2018 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SUPERFAMILY SSF47226 986 1101 7.85E-12 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SMART SM00073 988 1079 0.25 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SMART SM00073 1158 1267 0.0075 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SMART SM00073 656 753 2.0E-4 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SMART SM00387 1511 1652 6.0E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Gene3D G3DSA:1.20.120.160 650 782 2.8E-23 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Gene3D G3DSA:1.20.120.160 981 1083 5.6E-7 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SUPERFAMILY SSF50341 1651 1784 2.88E-19 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SUPERFAMILY SSF47384 1330 1384 7.06E-6 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Gene3D G3DSA:2.40.50.180 1675 1740 3.7E-22 T 12-10-2018 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Pfam PF00072 Response regulator receiver domain 1823 1934 2.3E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Gene3D G3DSA:3.40.50.12740 1822 1947 6.9E-40 T 12-10-2018 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SUPERFAMILY SSF47226 26 153 2.86E-7 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1515 1651 3.4E-10 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SUPERFAMILY SSF52172 1823 1941 4.55E-37 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Gene3D G3DSA:3.30.565.10 1465 1651 9.8E-47 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SMART SM00448 1821 1934 1.6E-36 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Pfam PF01627 Hpt domain 658 751 1.4E-14 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Pfam PF01627 Hpt domain 989 1062 1.2E-7 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Pfam PF01627 Hpt domain 1171 1267 3.9E-15 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SUPERFAMILY SSF55874 1468 1650 5.76E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Gene3D G3DSA:1.20.120.160 1169 1276 7.3E-22 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Pfam PF01584 CheW-like domain 1656 1784 2.3E-9 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SUPERFAMILY SSF47226 657 772 3.14E-23 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Gene3D G3DSA:2.30.30.40 1652 1780 3.7E-22 T 12-10-2018 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1556 1570 6.0E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1636 1649 6.0E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1612 1630 6.0E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SUPERFAMILY SSF47226 1167 1269 6.28E-23 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SMART SM01231 1329 1466 2.2E-11 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Gene3D G3DSA:1.10.287.560 1329 1394 1.6E-6 T 12-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 SMART SM00260 1644 1785 3.3E-4 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_3629 416aaee6360c4176c09ccedb115b0316 1947 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 1330 1461 2.7E-5 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 Hamap MF_01454 GTPase Obg [obg]. 2 334 46.929 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 7.8E-36 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 7.8E-36 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 7.8E-36 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 7.8E-36 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 12-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 Gene3D G3DSA:3.40.50.300 159 340 3.3E-55 T 12-10-2018 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 333 6.0E-142 T 12-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 Pfam PF01018 GTP1/OBG 4 158 2.5E-55 T 12-10-2018 IPR006169 GTP1/OBG domain Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 SUPERFAMILY SSF82051 2 158 1.44E-53 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 Pfam PF01926 50S ribosome-binding GTPase 161 285 3.2E-25 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 PIRSF PIRSF002401 1 352 1.2E-134 T 12-10-2018 IPR035101 GTP-binding protein, Obg-type Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 Gene3D G3DSA:2.70.210.12 1 158 4.3E-56 T 12-10-2018 IPR036726 GTP1/OBG domain superfamily Alide_0928 04b9c9717cf803b6c8bc51fd6776b00e 357 SUPERFAMILY SSF52540 152 336 3.05E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0263 91e7d3c22d90e62088fe66f0b738fed7 966 SUPERFAMILY SSF54001 353 564 1.93E-29 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Alide_0263 91e7d3c22d90e62088fe66f0b738fed7 966 Pfam PF00112 Papain family cysteine protease 352 550 7.0E-10 T 12-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 Alide_0263 91e7d3c22d90e62088fe66f0b738fed7 966 SUPERFAMILY SSF53474 635 865 1.24E-8 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0263 91e7d3c22d90e62088fe66f0b738fed7 966 SUPERFAMILY SSF47090 3 75 1.1E-5 T 12-10-2018 IPR036365 PGBD-like superfamily Alide_0263 91e7d3c22d90e62088fe66f0b738fed7 966 Gene3D G3DSA:1.10.530.70 118 256 6.3E-10 T 12-10-2018 Alide_0263 91e7d3c22d90e62088fe66f0b738fed7 966 Gene3D G3DSA:3.90.70.10 304 565 7.6E-53 T 12-10-2018 Alide_0263 91e7d3c22d90e62088fe66f0b738fed7 966 SUPERFAMILY SSF53955 113 265 4.5E-16 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_0263 91e7d3c22d90e62088fe66f0b738fed7 966 SMART SM00645 344 564 0.0023 T 12-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 Alide_2167 c4cebece1ea83c9afc81c263a25a09b9 383 SUPERFAMILY SSF53383 5 382 2.63E-101 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2167 c4cebece1ea83c9afc81c263a25a09b9 383 Gene3D G3DSA:3.90.1150.10 19 380 8.2E-132 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2167 c4cebece1ea83c9afc81c263a25a09b9 383 Pfam PF00155 Aminotransferase class I and II 30 380 1.8E-55 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_2167 c4cebece1ea83c9afc81c263a25a09b9 383 Gene3D G3DSA:3.40.640.10 43 281 8.2E-132 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3203 a06b22b2ed3a8f18e8f8ad612ca8d7ce 322 SUPERFAMILY SSF53850 110 282 3.29E-9 T 12-10-2018 Alide_3203 a06b22b2ed3a8f18e8f8ad612ca8d7ce 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 318 8.6E-87 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3203 a06b22b2ed3a8f18e8f8ad612ca8d7ce 322 Gene3D G3DSA:3.40.190.10 124 247 5.7E-108 T 12-10-2018 Alide_3203 a06b22b2ed3a8f18e8f8ad612ca8d7ce 322 Gene3D G3DSA:3.40.190.150 26 312 5.7E-108 T 12-10-2018 Alide_3203 a06b22b2ed3a8f18e8f8ad612ca8d7ce 322 PIRSF PIRSF017082 2 322 3.9E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0787 bad50613c9cfccb9eb5c2a94ca09d315 310 Pfam PF06189 5'-nucleotidase 39 298 5.3E-107 T 12-10-2018 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821|Reactome: R-HSA-74259 Alide_2924 565b6717de669879c05293eedb2d231d 571 SUPERFAMILY SSF54862 469 570 1.08E-28 T 12-10-2018 Alide_2924 565b6717de669879c05293eedb2d231d 571 Gene3D G3DSA:3.30.9.90 89 469 2.2E-189 T 12-10-2018 Alide_2924 565b6717de669879c05293eedb2d231d 571 Gene3D G3DSA:3.50.50.60 17 406 2.2E-189 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2924 565b6717de669879c05293eedb2d231d 571 SUPERFAMILY SSF51905 14 467 1.44E-58 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2924 565b6717de669879c05293eedb2d231d 571 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 194 209 1.1E-5 T 12-10-2018 Alide_2924 565b6717de669879c05293eedb2d231d 571 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 19 41 1.1E-5 T 12-10-2018 Alide_2924 565b6717de669879c05293eedb2d231d 571 Pfam PF13450 NAD(P)-binding Rossmann-like domain 22 67 3.1E-7 T 12-10-2018 Alide_2924 565b6717de669879c05293eedb2d231d 571 Gene3D G3DSA:3.30.70.20 470 566 2.6E-40 T 12-10-2018 Alide_2924 565b6717de669879c05293eedb2d231d 571 SUPERFAMILY SSF54373 227 327 2.94E-33 T 12-10-2018 Alide_2924 565b6717de669879c05293eedb2d231d 571 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 465 569 5.2E-51 T 12-10-2018 Alide_2329 565b6717de669879c05293eedb2d231d 571 SUPERFAMILY SSF54862 469 570 1.08E-28 T 12-10-2018 Alide_2329 565b6717de669879c05293eedb2d231d 571 Gene3D G3DSA:3.30.9.90 89 469 2.2E-189 T 12-10-2018 Alide_2329 565b6717de669879c05293eedb2d231d 571 Gene3D G3DSA:3.50.50.60 17 406 2.2E-189 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2329 565b6717de669879c05293eedb2d231d 571 SUPERFAMILY SSF51905 14 467 1.44E-58 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2329 565b6717de669879c05293eedb2d231d 571 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 194 209 1.1E-5 T 12-10-2018 Alide_2329 565b6717de669879c05293eedb2d231d 571 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 19 41 1.1E-5 T 12-10-2018 Alide_2329 565b6717de669879c05293eedb2d231d 571 Pfam PF13450 NAD(P)-binding Rossmann-like domain 22 67 3.1E-7 T 12-10-2018 Alide_2329 565b6717de669879c05293eedb2d231d 571 Gene3D G3DSA:3.30.70.20 470 566 2.6E-40 T 12-10-2018 Alide_2329 565b6717de669879c05293eedb2d231d 571 SUPERFAMILY SSF54373 227 327 2.94E-33 T 12-10-2018 Alide_2329 565b6717de669879c05293eedb2d231d 571 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 465 569 5.2E-51 T 12-10-2018 Alide_1317 619834819b86a508268c240e12c9cb22 748 Gene3D G3DSA:3.30.460.10 224 356 1.5E-45 T 12-10-2018 Alide_1317 619834819b86a508268c240e12c9cb22 748 Gene3D G3DSA:3.30.70.260 672 748 4.2E-16 T 12-10-2018 Alide_1317 619834819b86a508268c240e12c9cb22 748 Pfam PF04607 Region found in RelA / SpoT proteins 266 375 3.8E-35 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 Alide_1317 619834819b86a508268c240e12c9cb22 748 Pfam PF13328 HD domain 46 207 5.5E-48 T 12-10-2018 IPR003607 HD/PDEase domain Alide_1317 619834819b86a508268c240e12c9cb22 748 SUPERFAMILY SSF109604 31 221 5.02E-43 T 12-10-2018 Alide_1317 619834819b86a508268c240e12c9cb22 748 Pfam PF02824 TGS domain 420 478 7.1E-21 T 12-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Alide_1317 619834819b86a508268c240e12c9cb22 748 SUPERFAMILY SSF81301 223 402 1.1E-57 T 12-10-2018 Alide_1317 619834819b86a508268c240e12c9cb22 748 SMART SM00954 266 376 1.1E-60 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 Alide_1317 619834819b86a508268c240e12c9cb22 748 Gene3D G3DSA:3.10.20.30 414 486 5.9E-29 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_1317 619834819b86a508268c240e12c9cb22 748 SUPERFAMILY SSF55021 672 747 1.5E-13 T 12-10-2018 Alide_1317 619834819b86a508268c240e12c9cb22 748 Gene3D G3DSA:1.10.3210.10 26 222 2.8E-40 T 12-10-2018 Alide_1317 619834819b86a508268c240e12c9cb22 748 SUPERFAMILY SSF81271 414 478 3.71E-19 T 12-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Alide_1317 619834819b86a508268c240e12c9cb22 748 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 58 744 4.5E-168 T 12-10-2018 IPR004811 RelA/SpoT family GO:0015969 Alide_1317 619834819b86a508268c240e12c9cb22 748 Pfam PF13291 ACT domain 673 747 4.3E-16 T 12-10-2018 IPR002912 ACT domain Alide_0359 870c36754e67afa1ab6723269e31a540 282 Gene3D G3DSA:3.40.50.1820 19 278 1.8E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0359 870c36754e67afa1ab6723269e31a540 282 Pfam PF00561 alpha/beta hydrolase fold 34 143 8.0E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0359 870c36754e67afa1ab6723269e31a540 282 SUPERFAMILY SSF53474 11 278 1.2E-43 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 SMART SM00436 122 217 9.3E-33 T 12-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 SMART SM00493 1 122 9.9E-24 T 12-10-2018 IPR006171 TOPRIM domain Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 Gene3D G3DSA:1.10.460.10 156 600 6.0E-147 T 12-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 Pfam PF01131 DNA topoisomerase 152 590 1.1E-107 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 SUPERFAMILY SSF57783 615 652 1.26E-11 T 12-10-2018 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 Gene3D G3DSA:1.10.290.10 280 409 6.0E-147 T 12-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 Gene3D G3DSA:3.30.65.10 608 658 1.7E-7 T 12-10-2018 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 Gene3D G3DSA:3.40.50.140 1 149 3.1E-50 T 12-10-2018 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 519 533 1.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 1.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 96 109 1.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 1.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 187 205 1.1E-25 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 Pfam PF01751 Toprim domain 3 129 7.0E-15 T 12-10-2018 IPR006171 TOPRIM domain Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 308 323 - T 12-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 652 2.6E-213 T 12-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 Gene3D G3DSA:2.70.20.10 211 486 6.0E-147 T 12-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 SMART SM00437 271 556 1.3E-65 T 12-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 619 652 4.8E-12 T 12-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Alide_2714 4cea308e695d355c86e3e1d432cd1765 671 SUPERFAMILY SSF56712 1 604 1.7E-176 T 12-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Alide_2696 0cd24d70a4403a98c5da3529e1147f8b 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 150 1.5E-20 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_2696 0cd24d70a4403a98c5da3529e1147f8b 172 Gene3D G3DSA:1.10.1740.10 2 64 6.4E-14 T 12-10-2018 Alide_2696 0cd24d70a4403a98c5da3529e1147f8b 172 Pfam PF08281 Sigma-70, region 4 95 146 7.8E-12 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_2696 0cd24d70a4403a98c5da3529e1147f8b 172 Gene3D G3DSA:1.10.10.10 65 152 1.3E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2696 0cd24d70a4403a98c5da3529e1147f8b 172 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 25 56 - T 12-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_2696 0cd24d70a4403a98c5da3529e1147f8b 172 SUPERFAMILY SSF88659 91 150 7.66E-11 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_2696 0cd24d70a4403a98c5da3529e1147f8b 172 Pfam PF04542 Sigma-70 region 2 5 68 1.2E-13 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Alide_2696 0cd24d70a4403a98c5da3529e1147f8b 172 SUPERFAMILY SSF88946 4 85 5.49E-16 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 430 2.8E-160 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 SUPERFAMILY SSF55681 121 431 1.44E-99 T 12-10-2018 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 SUPERFAMILY SSF46589 1 117 5.13E-24 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 Gene3D G3DSA:1.10.287.40 1 109 1.4E-17 T 12-10-2018 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 435 39.29 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 PIRSF PIRSF001529 1 438 3.9E-175 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 112 2.6E-25 T 12-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 237 412 1.6E-38 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 Gene3D G3DSA:3.30.930.10 110 437 6.6E-115 T 12-10-2018 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 PRINTS PR00981 Seryl-tRNA synthetase signature 278 290 2.3E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 PRINTS PR00981 Seryl-tRNA synthetase signature 290 303 2.3E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 PRINTS PR00981 Seryl-tRNA synthetase signature 330 343 2.3E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 PRINTS PR00981 Seryl-tRNA synthetase signature 365 381 2.3E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Alide_3360 0d0be6d400a3f9eeb9dea0133056478d 438 PRINTS PR00981 Seryl-tRNA synthetase signature 347 363 2.3E-32 T 12-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 Gene3D G3DSA:1.10.10.10 1 54 4.6E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 SMART SM00344 1 110 7.2E-48 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.3E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.3E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 3.3E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 Pfam PF13404 AsnC-type helix-turn-helix domain 1 42 1.9E-18 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 Gene3D G3DSA:3.30.70.920 55 138 1.4E-26 T 12-10-2018 Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 Pfam PF01037 Lrp/AsnC ligand binding domain 67 141 1.4E-26 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 SUPERFAMILY SSF54909 64 144 3.35E-22 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_2342 54a4163742ef7a943205ada19e5f4ebf 153 SUPERFAMILY SSF46785 1 59 3.21E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3969 a10a8626634d2997e40598a9cdb5ba01 131 SUPERFAMILY SSF56047 2 130 1.44E-48 T 12-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3969 a10a8626634d2997e40598a9cdb5ba01 131 Gene3D G3DSA:3.30.1490.10 78 131 3.4E-24 T 12-10-2018 Alide_3969 a10a8626634d2997e40598a9cdb5ba01 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 32.589 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3969 a10a8626634d2997e40598a9cdb5ba01 131 Pfam PF00410 Ribosomal protein S8 5 130 4.1E-50 T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3969 a10a8626634d2997e40598a9cdb5ba01 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 12-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3969 a10a8626634d2997e40598a9cdb5ba01 131 Gene3D G3DSA:3.30.1370.30 4 77 5.3E-29 T 12-10-2018 Alide_0783 ebc9805358b96a0923c2f51a6cfc5632 770 Gene3D G3DSA:1.20.1560.10 153 495 1.0E-88 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Alide_0783 ebc9805358b96a0923c2f51a6cfc5632 770 Pfam PF00664 ABC transporter transmembrane region 187 458 3.7E-43 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Alide_0783 ebc9805358b96a0923c2f51a6cfc5632 770 SUPERFAMILY SSF90123 173 487 2.49E-78 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Alide_0783 ebc9805358b96a0923c2f51a6cfc5632 770 SUPERFAMILY SSF52540 498 742 4.13E-93 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0783 ebc9805358b96a0923c2f51a6cfc5632 770 Gene3D G3DSA:3.40.50.300 499 758 3.9E-96 T 12-10-2018 Alide_0783 ebc9805358b96a0923c2f51a6cfc5632 770 SMART SM00382 532 718 9.3E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0783 ebc9805358b96a0923c2f51a6cfc5632 770 Pfam PF00005 ABC transporter 524 672 1.2E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0783 ebc9805358b96a0923c2f51a6cfc5632 770 ProSitePatterns PS00211 ABC transporters family signature. 644 658 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1891 c25352a4fc97b46e08ce3ee13d1513c8 307 SUPERFAMILY SSF52833 4 102 4.67E-15 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_1891 c25352a4fc97b46e08ce3ee13d1513c8 307 Gene3D G3DSA:3.40.30.110 192 307 1.0E-23 T 12-10-2018 Alide_1891 c25352a4fc97b46e08ce3ee13d1513c8 307 Gene3D G3DSA:3.40.30.110 1 154 1.8E-39 T 12-10-2018 Alide_1891 c25352a4fc97b46e08ce3ee13d1513c8 307 SUPERFAMILY SSF47616 90 215 5.85E-10 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_1891 c25352a4fc97b46e08ce3ee13d1513c8 307 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 80 3.6E-13 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_1891 c25352a4fc97b46e08ce3ee13d1513c8 307 Pfam PF13410 Glutathione S-transferase, C-terminal domain 149 211 1.2E-8 T 12-10-2018 Alide_1218 b71a54ee5d2d4cb337a17eba380298e8 410 Gene3D G3DSA:1.20.1720.10 16 396 2.9E-99 T 12-10-2018 Alide_1218 b71a54ee5d2d4cb337a17eba380298e8 410 SUPERFAMILY SSF103473 6 401 1.57E-64 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1218 b71a54ee5d2d4cb337a17eba380298e8 410 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 14 390 8.6E-79 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 Alide_1218 b71a54ee5d2d4cb337a17eba380298e8 410 Pfam PF07690 Major Facilitator Superfamily 20 362 1.1E-45 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_0679 8b50d82e38561e0586e0c019c01acb92 277 Gene3D G3DSA:3.10.129.90 1 277 9.1E-89 T 12-10-2018 Alide_0679 8b50d82e38561e0586e0c019c01acb92 277 SUPERFAMILY SSF54637 128 274 5.52E-24 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0679 8b50d82e38561e0586e0c019c01acb92 277 Pfam PF13622 Thioesterase-like superfamily 29 274 4.7E-44 T 12-10-2018 Alide_0679 8b50d82e38561e0586e0c019c01acb92 277 SUPERFAMILY SSF54637 7 113 1.93E-7 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 5.1E-130 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 SUPERFAMILY SSF48179 183 332 2.38E-68 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 Gene3D G3DSA:3.40.50.720 1 181 1.6E-77 T 12-10-2018 Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 3.2E-74 T 12-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.548 T 12-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 PIRSF PIRSF000116 2 205 1.8E-45 T 12-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 PIRSF PIRSF000116 201 332 5.3E-15 T 12-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 SUPERFAMILY SSF51735 1 182 5.41E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 5.4E-62 T 12-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Alide_1763 d30fd9c44f285c363b8cad626f3c9f00 338 Gene3D G3DSA:1.10.3730.40 182 338 1.4E-72 T 12-10-2018 Alide_3298 62b3c2e1df28d40a80eda78be3981432 331 PIRSF PIRSF017082 3 329 6.3E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3298 62b3c2e1df28d40a80eda78be3981432 331 SUPERFAMILY SSF53850 122 290 8.41E-10 T 12-10-2018 Alide_3298 62b3c2e1df28d40a80eda78be3981432 331 Gene3D G3DSA:3.40.190.10 132 255 2.2E-109 T 12-10-2018 Alide_3298 62b3c2e1df28d40a80eda78be3981432 331 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 326 1.3E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3298 62b3c2e1df28d40a80eda78be3981432 331 Gene3D G3DSA:3.40.190.150 35 320 2.2E-109 T 12-10-2018 Alide_4214 144f5ea49132088536d5578a2b3fa5e0 376 PIRSF PIRSF000524 1 376 1.6E-60 T 12-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 Alide_4214 144f5ea49132088536d5578a2b3fa5e0 376 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 8 361 1.1E-147 T 12-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Alide_4214 144f5ea49132088536d5578a2b3fa5e0 376 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 371 203.594 T 12-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Alide_4214 144f5ea49132088536d5578a2b3fa5e0 376 Gene3D G3DSA:3.40.640.10 18 262 4.0E-108 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_4214 144f5ea49132088536d5578a2b3fa5e0 376 Pfam PF00266 Aminotransferase class-V 27 304 1.4E-26 T 12-10-2018 IPR000192 Aminotransferase class V domain Alide_4214 144f5ea49132088536d5578a2b3fa5e0 376 SUPERFAMILY SSF53383 8 367 5.25E-85 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_4214 144f5ea49132088536d5578a2b3fa5e0 376 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 7 363 6.9E-155 T 12-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 Alide_4214 144f5ea49132088536d5578a2b3fa5e0 376 Gene3D G3DSA:3.90.1150.10 10 349 4.0E-108 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2024 9a44a12fb24f5cd7d5a2c352f1e2e0ed 291 SUPERFAMILY SSF103481 36 143 8.89E-8 T 12-10-2018 Alide_2024 9a44a12fb24f5cd7d5a2c352f1e2e0ed 291 SUPERFAMILY SSF103481 184 283 7.98E-6 T 12-10-2018 Alide_2024 9a44a12fb24f5cd7d5a2c352f1e2e0ed 291 TIGRFAM TIGR00688 rarD: protein RarD 2 256 1.3E-58 T 12-10-2018 IPR004626 RarD protein GO:0005887 Alide_2024 9a44a12fb24f5cd7d5a2c352f1e2e0ed 291 Pfam PF00892 EamA-like transporter family 4 140 2.0E-6 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_4135 fc76688d41e73fc3d7fa50e89d01c5ad 287 Pfam PF13280 WYL domain 125 199 1.5E-8 T 12-10-2018 IPR026881 WYL domain Alide_4135 fc76688d41e73fc3d7fa50e89d01c5ad 287 PIRSF PIRSF015558 1 285 1.7E-80 T 12-10-2018 IPR016634 WYL domain protein, s026 type Alide_0422 57f00a105db72ec8f0f407d41412dd06 164 Gene3D G3DSA:3.40.630.30 7 163 4.0E-29 T 12-10-2018 Alide_0422 57f00a105db72ec8f0f407d41412dd06 164 SUPERFAMILY SSF55729 14 154 2.23E-27 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_0422 57f00a105db72ec8f0f407d41412dd06 164 Pfam PF00583 Acetyltransferase (GNAT) family 53 142 2.9E-13 T 12-10-2018 IPR000182 GNAT domain Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 Gene3D G3DSA:3.40.140.10 2 145 4.6E-40 T 12-10-2018 Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 Gene3D G3DSA:3.40.430.10 146 368 5.7E-68 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 151 363 1.1E-51 T 12-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 103 8.8E-18 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 Pfam PF01872 RibD C-terminal domain 152 358 9.9E-45 T 12-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 PIRSF PIRSF006769 1 366 3.7E-114 T 12-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 93 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 9 360 1.4E-100 T 12-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 SUPERFAMILY SSF53927 7 147 2.51E-40 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Alide_3253 1cdb0092a5ba9ae2c1659990c2ac8bc5 370 SUPERFAMILY SSF53597 150 362 3.21E-60 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Alide_4360 a73992ccb73419822dd0550fb5108f7f 102 Pfam PF09834 Predicted membrane protein (DUF2061) 15 66 5.6E-17 T 12-10-2018 IPR018638 Domain of unknown function DUF2061, membrane Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 PIRSF PIRSF016578 13 203 8.4E-5 T 12-10-2018 Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 PIRSF PIRSF016578 248 400 5.7E-12 T 12-10-2018 Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 Gene3D G3DSA:2.40.110.10 127 248 1.1E-32 T 12-10-2018 Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 Gene3D G3DSA:1.10.540.10 10 125 1.6E-30 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 129 229 1.9E-17 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 Gene3D G3DSA:1.20.140.10 249 397 9.8E-54 T 12-10-2018 Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 124 3.5E-28 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 SUPERFAMILY SSF56645 12 252 8.9E-63 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 SUPERFAMILY SSF47203 241 393 9.67E-54 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0526 15c08e7f183649e6db52599f3acbff7e 416 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 390 5.9E-46 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0719 a8a291da650d19d23a1c9919136928c7 331 SUPERFAMILY SSF46565 1 72 7.85E-30 T 12-10-2018 IPR036869 Chaperone J-domain superfamily Alide_0719 a8a291da650d19d23a1c9919136928c7 331 SMART SM00271 4 61 4.3E-27 T 12-10-2018 IPR001623 DnaJ domain Alide_0719 a8a291da650d19d23a1c9919136928c7 331 Gene3D G3DSA:2.60.260.20 222 299 1.1E-18 T 12-10-2018 Alide_0719 a8a291da650d19d23a1c9919136928c7 331 Pfam PF01556 DnaJ C terminal domain 146 299 1.8E-27 T 12-10-2018 IPR002939 Chaperone DnaJ, C-terminal Alide_0719 a8a291da650d19d23a1c9919136928c7 331 Gene3D G3DSA:1.10.287.110 2 127 2.3E-34 T 12-10-2018 IPR036869 Chaperone J-domain superfamily Alide_0719 a8a291da650d19d23a1c9919136928c7 331 Gene3D G3DSA:2.60.260.20 139 220 5.6E-22 T 12-10-2018 Alide_0719 a8a291da650d19d23a1c9919136928c7 331 SUPERFAMILY SSF49493 138 234 1.7E-15 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Alide_0719 a8a291da650d19d23a1c9919136928c7 331 SUPERFAMILY SSF49493 227 310 2.75E-16 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Alide_0719 a8a291da650d19d23a1c9919136928c7 331 Pfam PF00226 DnaJ domain 5 66 3.1E-23 T 12-10-2018 IPR001623 DnaJ domain Alide_0719 a8a291da650d19d23a1c9919136928c7 331 PRINTS PR00625 DnaJ domain signature 61 80 1.0E-21 T 12-10-2018 IPR001623 DnaJ domain Alide_0719 a8a291da650d19d23a1c9919136928c7 331 PRINTS PR00625 DnaJ domain signature 25 40 1.0E-21 T 12-10-2018 IPR001623 DnaJ domain Alide_0719 a8a291da650d19d23a1c9919136928c7 331 PRINTS PR00625 DnaJ domain signature 7 25 1.0E-21 T 12-10-2018 IPR001623 DnaJ domain Alide_0719 a8a291da650d19d23a1c9919136928c7 331 PRINTS PR00625 DnaJ domain signature 41 61 1.0E-21 T 12-10-2018 IPR001623 DnaJ domain Alide_0570 3a2cd4dabb75d60d55d79638ca917ef2 147 Gene3D G3DSA:3.50.80.10 1 145 7.9E-54 T 12-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Alide_0570 3a2cd4dabb75d60d55d79638ca917ef2 147 SUPERFAMILY SSF69500 1 143 3.92E-53 T 12-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Alide_0570 3a2cd4dabb75d60d55d79638ca917ef2 147 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 4 142 1.5E-52 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Alide_0570 3a2cd4dabb75d60d55d79638ca917ef2 147 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 33.58 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Alide_0570 3a2cd4dabb75d60d55d79638ca917ef2 147 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 143 2.2E-52 T 12-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Alide_1342 bb568aaba0fa3f593da74190557fbe87 254 PIRSF PIRSF004846 5 254 8.4E-49 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 Alide_1342 bb568aaba0fa3f593da74190557fbe87 254 Pfam PF13531 Bacterial extracellular solute-binding protein 30 252 8.2E-45 T 12-10-2018 Alide_1342 bb568aaba0fa3f593da74190557fbe87 254 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 34 251 3.0E-71 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 Alide_1342 bb568aaba0fa3f593da74190557fbe87 254 Gene3D G3DSA:3.40.190.10 108 214 5.8E-81 T 12-10-2018 Alide_1342 bb568aaba0fa3f593da74190557fbe87 254 Gene3D G3DSA:3.40.190.10 33 252 5.8E-81 T 12-10-2018 Alide_1342 bb568aaba0fa3f593da74190557fbe87 254 SUPERFAMILY SSF53850 28 253 1.77E-61 T 12-10-2018 Alide_2511 307140ed6aba1fdf7ed395f0766c5d17 67 Pfam PF01632 Ribosomal protein L35 2 62 2.2E-23 T 12-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2511 307140ed6aba1fdf7ed395f0766c5d17 67 PRINTS PR00064 Ribosomal protein L35 signature 3 20 2.0E-15 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Alide_2511 307140ed6aba1fdf7ed395f0766c5d17 67 PRINTS PR00064 Ribosomal protein L35 signature 36 54 2.0E-15 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Alide_2511 307140ed6aba1fdf7ed395f0766c5d17 67 PRINTS PR00064 Ribosomal protein L35 signature 21 35 2.0E-15 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Alide_2511 307140ed6aba1fdf7ed395f0766c5d17 67 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 17.414 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Alide_2511 307140ed6aba1fdf7ed395f0766c5d17 67 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 63 9.1E-24 T 12-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Alide_2511 307140ed6aba1fdf7ed395f0766c5d17 67 SUPERFAMILY SSF143034 2 64 1.31E-22 T 12-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2511 307140ed6aba1fdf7ed395f0766c5d17 67 Gene3D G3DSA:2.40.50.530 1 65 1.6E-19 T 12-10-2018 Alide_2511 307140ed6aba1fdf7ed395f0766c5d17 67 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 12-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0349 0af48d8adc048cf9ff5307445839315e 305 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 8 304 1.7E-20 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Alide_0349 0af48d8adc048cf9ff5307445839315e 305 Gene3D G3DSA:3.40.50.720 10 304 2.8E-88 T 12-10-2018 Alide_0349 0af48d8adc048cf9ff5307445839315e 305 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 191 213 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Alide_0349 0af48d8adc048cf9ff5307445839315e 305 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 220 236 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Alide_0349 0af48d8adc048cf9ff5307445839315e 305 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 281 7.1E-54 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Alide_0349 0af48d8adc048cf9ff5307445839315e 305 SUPERFAMILY SSF52283 5 134 3.61E-23 T 12-10-2018 Alide_0349 0af48d8adc048cf9ff5307445839315e 305 Gene3D G3DSA:3.40.50.720 100 279 2.8E-88 T 12-10-2018 Alide_0349 0af48d8adc048cf9ff5307445839315e 305 SUPERFAMILY SSF51735 100 282 2.86E-52 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 297 39.465 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 161 190 - T 12-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 SUPERFAMILY SSF52210 132 296 6.93E-52 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 SMART SM00881 4 103 2.1E-27 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 PIRSF PIRSF001553 1 297 5.2E-113 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 Pfam PF02629 CoA binding domain 6 102 2.7E-22 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 Gene3D G3DSA:3.40.50.720 2 132 5.0E-41 T 12-10-2018 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 PRINTS PR01798 Succinyl-CoA synthase signature 186 204 8.0E-33 T 12-10-2018 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 PRINTS PR01798 Succinyl-CoA synthase signature 249 266 8.0E-33 T 12-10-2018 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 PRINTS PR01798 Succinyl-CoA synthase signature 217 230 8.0E-33 T 12-10-2018 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 PRINTS PR01798 Succinyl-CoA synthase signature 85 102 8.0E-33 T 12-10-2018 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 Gene3D G3DSA:3.40.50.261 133 297 3.6E-66 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 Pfam PF00549 CoA-ligase 160 271 8.6E-15 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 245 258 - T 12-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 SUPERFAMILY SSF51735 1 117 4.85E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4265 ccc7d480235c58eb95305c3c025eab2f 297 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 297 1.3E-123 T 12-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 5.6E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 5.6E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 Gene3D G3DSA:1.20.120.530 89 245 6.4E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 SUPERFAMILY SSF46785 13 74 9.78E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 Pfam PF07729 FCD domain 106 234 4.8E-19 T 12-10-2018 IPR011711 GntR, C-terminal Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 SUPERFAMILY SSF48008 104 240 1.6E-22 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 Gene3D G3DSA:1.10.10.10 6 81 2.7E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 74 1.0E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 SMART SM00895 106 235 1.0E-16 T 12-10-2018 IPR011711 GntR, C-terminal Alide_4366 48ab2bd587632ac4a7949ae19133d3d8 279 SMART SM00345 20 81 8.9E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1476 f6b622de9eb7390ee823b7ad636d7078 262 Gene3D G3DSA:1.20.1180.10 193 262 1.6E-21 T 12-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 Alide_1476 f6b622de9eb7390ee823b7ad636d7078 262 SUPERFAMILY SSF51161 2 260 1.51E-78 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily Alide_1476 f6b622de9eb7390ee823b7ad636d7078 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 4 260 6.6E-102 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Alide_1476 f6b622de9eb7390ee823b7ad636d7078 262 Gene3D G3DSA:2.160.10.10 1 191 3.3E-52 T 12-10-2018 Alide_1476 f6b622de9eb7390ee823b7ad636d7078 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 176 260 2.2E-28 T 12-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 Alide_1476 f6b622de9eb7390ee823b7ad636d7078 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 262 45.928 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Alide_1476 f6b622de9eb7390ee823b7ad636d7078 262 PIRSF PIRSF000456 1 262 6.3E-105 T 12-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Alide_1476 f6b622de9eb7390ee823b7ad636d7078 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 19 48 3.7E-7 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_1476 f6b622de9eb7390ee823b7ad636d7078 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 105 139 3.0E-8 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_1215 3cf4c8907fbf454f2e9ce8e5b375ea14 377 Gene3D G3DSA:3.40.50.2300 30 351 1.4E-97 T 12-10-2018 Alide_1215 3cf4c8907fbf454f2e9ce8e5b375ea14 377 SUPERFAMILY SSF53822 29 373 2.51E-89 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_1215 3cf4c8907fbf454f2e9ce8e5b375ea14 377 Pfam PF13458 Periplasmic binding protein 29 370 1.9E-62 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_1215 3cf4c8907fbf454f2e9ce8e5b375ea14 377 Gene3D G3DSA:3.40.50.2300 149 277 1.4E-97 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Gene3D G3DSA:3.90.480.10 548 633 6.1E-6 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Pfam PF04324 BFD-like [2Fe-2S] binding domain 493 543 2.8E-13 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Pfam PF04324 BFD-like [2Fe-2S] binding domain 429 476 1.4E-13 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 568 629 5.4E-14 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 SUPERFAMILY SSF55124 527 629 5.23E-23 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PIRSF PIRSF037149 1 814 0.0 T 12-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Gene3D G3DSA:3.30.390.30 324 397 5.1E-6 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Gene3D G3DSA:1.10.10.1100 428 481 5.7E-10 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Gene3D G3DSA:3.30.413.10 637 790 6.1E-35 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00397 Sirohaem Fe-binding site signature 685 703 1.2E-7 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00397 Sirohaem Fe-binding site signature 642 660 1.2E-7 T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 SUPERFAMILY SSF51905 4 196 1.3E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 7 799 4.1E-273 T 12-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 685 701 - T 12-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 287 4.6E-54 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Gene3D G3DSA:3.50.50.60 8 287 5.6E-88 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 SUPERFAMILY SSF51905 150 317 2.07E-30 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 638 773 2.6E-24 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 Gene3D G3DSA:3.50.50.60 115 251 5.6E-88 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 SUPERFAMILY SSF56014 639 803 6.28E-49 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 5.7E-20 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 5.7E-20 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 5.7E-20 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 5.7E-20 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 5.7E-20 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 5.7E-12 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 5.7E-12 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 280 287 5.7E-12 T 12-10-2018 Alide_2391 6f7f531c29d2eb737dbff42a4097167c 816 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 152 177 5.7E-12 T 12-10-2018 Alide_1468 1c1f94fbdd2d6e290dba71a055bfb882 245 SUPERFAMILY SSF64005 7 225 1.7E-80 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Alide_1468 1c1f94fbdd2d6e290dba71a055bfb882 245 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 9 230 38.172 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Alide_1468 1c1f94fbdd2d6e290dba71a055bfb882 245 Pfam PF01255 Putative undecaprenyl diphosphate synthase 16 229 6.0E-78 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Alide_1468 1c1f94fbdd2d6e290dba71a055bfb882 245 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 9 229 1.8E-80 T 12-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Alide_1468 1c1f94fbdd2d6e290dba71a055bfb882 245 Gene3D G3DSA:3.40.1180.10 1 230 1.6E-88 T 12-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Alide_1468 1c1f94fbdd2d6e290dba71a055bfb882 245 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 175 192 - T 12-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 Pfam PF17392 Urocanase C-terminal domain 369 563 1.3E-94 T 12-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 Hamap MF_00577 Urocanate hydratase [hutU]. 4 573 49.789 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 ProSitePatterns PS01233 Urocanase signature. 459 474 - T 12-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 PIRSF PIRSF001423 7 573 6.7E-290 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 Gene3D G3DSA:3.40.50.10730 153 366 2.3E-249 T 12-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 TIGRFAM TIGR01228 hutU: urocanate hydratase 22 571 5.4E-288 T 12-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 SUPERFAMILY SSF111326 17 572 2.88E-254 T 12-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 Gene3D G3DSA:3.40.1770.10 28 558 2.3E-249 T 12-10-2018 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 Pfam PF17391 Urocanase N-terminal domain 23 149 1.7E-60 T 12-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2776 4c2f102890f3939f8830bbb8128b4f0e 573 Pfam PF01175 Urocanase Rossmann-like domain 152 366 7.9E-79 T 12-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_3723 9867f9744e3756efa2caabcbf9bc686d 128 SMART SM00448 3 117 1.0E-41 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3723 9867f9744e3756efa2caabcbf9bc686d 128 SUPERFAMILY SSF52172 3 121 1.57E-36 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3723 9867f9744e3756efa2caabcbf9bc686d 128 Pfam PF00072 Response regulator receiver domain 5 117 3.5E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3723 9867f9744e3756efa2caabcbf9bc686d 128 Gene3D G3DSA:3.40.50.12740 1 126 2.9E-39 T 12-10-2018 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 PIRSF PIRSF000171 3 591 2.9E-43 T 12-10-2018 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 11 601 2.2E-275 T 12-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 48 57 - T 12-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 14 600 3.3E-232 T 12-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 SUPERFAMILY SSF46977 455 601 2.09E-42 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 Gene3D G3DSA:4.10.80.40 561 601 1.5E-13 T 12-10-2018 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 Gene3D G3DSA:1.20.58.100 436 550 6.4E-35 T 12-10-2018 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 Pfam PF00890 FAD binding domain 14 408 3.5E-117 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 SUPERFAMILY SSF51905 9 431 3.59E-79 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1959 31c06e66697adec44272a9ed625f9f89 601 SUPERFAMILY SSF56425 241 359 2.09E-40 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 Pfam PF02910 Fumarate reductase flavoprotein C-term 465 600 2.2E-39 T 12-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 14 36 1.4E-5 T 12-10-2018 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 386 393 1.4E-5 T 12-10-2018 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 Gene3D G3DSA:3.90.700.10 251 354 7.1E-163 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1959 31c06e66697adec44272a9ed625f9f89 601 Gene3D G3DSA:3.50.50.60 14 419 7.1E-163 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1972 1ac4149b94983029ec5fdda3c08319d6 155 Pfam PF01799 [2Fe-2S] binding domain 73 146 9.5E-32 T 12-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Alide_1972 1ac4149b94983029ec5fdda3c08319d6 155 Gene3D G3DSA:1.10.150.120 75 155 2.4E-34 T 12-10-2018 Alide_1972 1ac4149b94983029ec5fdda3c08319d6 155 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Alide_1972 1ac4149b94983029ec5fdda3c08319d6 155 Gene3D G3DSA:3.10.20.30 1 74 2.1E-29 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_1972 1ac4149b94983029ec5fdda3c08319d6 155 SUPERFAMILY SSF47741 85 152 2.75E-33 T 12-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily Alide_1972 1ac4149b94983029ec5fdda3c08319d6 155 SUPERFAMILY SSF54292 1 78 2.88E-24 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_1972 1ac4149b94983029ec5fdda3c08319d6 155 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 53 4.6E-6 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Alide_0858 c116206ea9b81b1cceafdba92049f6a6 259 Pfam PF00005 ABC transporter 26 184 6.3E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0858 c116206ea9b81b1cceafdba92049f6a6 259 PIRSF PIRSF039085 7 259 5.5E-114 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Alide_0858 c116206ea9b81b1cceafdba92049f6a6 259 SMART SM00382 35 232 6.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0858 c116206ea9b81b1cceafdba92049f6a6 259 SUPERFAMILY SSF52540 10 254 8.75E-77 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0858 c116206ea9b81b1cceafdba92049f6a6 259 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0858 c116206ea9b81b1cceafdba92049f6a6 259 Gene3D G3DSA:3.40.50.300 8 258 2.0E-76 T 12-10-2018 Alide_0703 29082109d05cdbbe9c5e9401a1d68d92 333 Pfam PF01728 FtsJ-like methyltransferase 63 329 1.3E-18 T 12-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Alide_0703 29082109d05cdbbe9c5e9401a1d68d92 333 SUPERFAMILY SSF53335 63 331 2.37E-16 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0703 29082109d05cdbbe9c5e9401a1d68d92 333 Gene3D G3DSA:3.10.290.10 1 65 7.3E-11 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Alide_0703 29082109d05cdbbe9c5e9401a1d68d92 333 Gene3D G3DSA:3.40.50.150 66 155 1.1E-34 T 12-10-2018 Alide_0703 29082109d05cdbbe9c5e9401a1d68d92 333 Gene3D G3DSA:3.40.50.150 206 333 4.3E-31 T 12-10-2018 Alide_0640 612d748061dba2fa07aae17ae79e7c6a 225 Gene3D G3DSA:1.10.357.10 6 223 6.7E-61 T 12-10-2018 Alide_0640 612d748061dba2fa07aae17ae79e7c6a 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.2E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0640 612d748061dba2fa07aae17ae79e7c6a 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.2E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0640 612d748061dba2fa07aae17ae79e7c6a 225 SUPERFAMILY SSF46689 5 73 1.46E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0640 612d748061dba2fa07aae17ae79e7c6a 225 Pfam PF13972 Bacterial transcriptional repressor 62 209 3.3E-40 T 12-10-2018 IPR025722 Bacterial transcriptional repressor TetR Alide_0640 612d748061dba2fa07aae17ae79e7c6a 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 9.1E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_1896 f9db1c5d2491a70d35c7b92b987daa74 786 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 6 780 36.522 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Alide_1896 f9db1c5d2491a70d35c7b92b987daa74 786 Gene3D G3DSA:3.20.20.210 10 546 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Alide_1896 f9db1c5d2491a70d35c7b92b987daa74 786 Gene3D G3DSA:3.20.20.210 411 778 0.0 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Alide_1896 f9db1c5d2491a70d35c7b92b987daa74 786 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 8 336 1.0E-109 T 12-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Alide_1896 f9db1c5d2491a70d35c7b92b987daa74 786 SUPERFAMILY SSF51726 7 415 4.84E-108 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Alide_1896 f9db1c5d2491a70d35c7b92b987daa74 786 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 453 775 1.4E-152 T 12-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Alide_1896 f9db1c5d2491a70d35c7b92b987daa74 786 SUPERFAMILY SSF51726 418 779 9.68E-118 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Alide_1896 f9db1c5d2491a70d35c7b92b987daa74 786 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 11 779 0.0 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Alide_1896 f9db1c5d2491a70d35c7b92b987daa74 786 PIRSF PIRSF000382 5 784 0.0 T 12-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 SUPERFAMILY SSF56645 2 245 1.96E-73 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 Gene3D G3DSA:1.10.540.10 1 120 6.9E-39 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 SUPERFAMILY SSF47203 231 380 7.57E-41 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 Gene3D G3DSA:1.20.140.10 237 383 1.1E-37 T 12-10-2018 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 PIRSF PIRSF016578 250 385 2.3E-5 T 12-10-2018 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 PIRSF PIRSF016578 4 196 1.2E-6 T 12-10-2018 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 118 1.7E-29 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 221 2.8E-21 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 380 9.1E-40 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 Gene3D G3DSA:2.40.110.10 121 236 4.5E-38 T 12-10-2018 Alide_0190 b1793640b0ecc4dcf69351147e582352 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2124 109112792843955c48c248d07c7a4f54 451 PRINTS PR00762 Chloride channel signature 171 190 4.6E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Alide_2124 109112792843955c48c248d07c7a4f54 451 PRINTS PR00762 Chloride channel signature 338 358 4.6E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Alide_2124 109112792843955c48c248d07c7a4f54 451 PRINTS PR00762 Chloride channel signature 84 101 4.6E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Alide_2124 109112792843955c48c248d07c7a4f54 451 PRINTS PR00762 Chloride channel signature 367 383 4.6E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Alide_2124 109112792843955c48c248d07c7a4f54 451 PRINTS PR00762 Chloride channel signature 385 404 4.6E-23 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Alide_2124 109112792843955c48c248d07c7a4f54 451 Gene3D G3DSA:1.10.3080.10 23 435 3.8E-79 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 Alide_2124 109112792843955c48c248d07c7a4f54 451 SUPERFAMILY SSF81340 16 432 6.15E-82 T 12-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 Alide_2124 109112792843955c48c248d07c7a4f54 451 Pfam PF00654 Voltage gated chloride channel 72 417 5.4E-75 T 12-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Alide_3365 ce9587808f119ca6f64024160605d73b 237 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 186 191 - T 12-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site Alide_3365 ce9587808f119ca6f64024160605d73b 237 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 236 4.0E-64 T 12-10-2018 IPR001405 Uncharacterised protein family UPF0758 Alide_3365 ce9587808f119ca6f64024160605d73b 237 SUPERFAMILY SSF102712 158 214 5.89E-5 T 12-10-2018 Alide_3365 ce9587808f119ca6f64024160605d73b 237 Gene3D G3DSA:3.40.140.10 114 237 7.6E-41 T 12-10-2018 Alide_3365 ce9587808f119ca6f64024160605d73b 237 Pfam PF04002 RadC-like JAB domain 117 236 3.4E-42 T 12-10-2018 IPR025657 RadC-like JAB domain Alide_2384 3f013f33a7c2531733c9fc2f88ed638e 468 Gene3D G3DSA:2.20.200.10 98 343 5.7E-122 T 12-10-2018 Alide_2384 3f013f33a7c2531733c9fc2f88ed638e 468 SUPERFAMILY SSF56954 3 457 3.79E-98 T 12-10-2018 Alide_2384 3f013f33a7c2531733c9fc2f88ed638e 468 Gene3D G3DSA:1.20.1600.10 51 455 5.7E-122 T 12-10-2018 Alide_2384 3f013f33a7c2531733c9fc2f88ed638e 468 Pfam PF02321 Outer membrane efflux protein 64 242 5.7E-25 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2384 3f013f33a7c2531733c9fc2f88ed638e 468 Pfam PF02321 Outer membrane efflux protein 273 430 4.0E-23 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2384 3f013f33a7c2531733c9fc2f88ed638e 468 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 6 454 1.1E-97 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Alide_3480 356d5150c9bb7de25ff4f2c7d8356868 251 SUPERFAMILY SSF52833 78 223 3.36E-8 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0869 fccd9d0b8aa95f90f99da1ed149e63b9 306 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0869 fccd9d0b8aa95f90f99da1ed149e63b9 306 SMART SM00382 32 212 2.3E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0869 fccd9d0b8aa95f90f99da1ed149e63b9 306 Gene3D G3DSA:3.40.50.300 2 274 8.5E-69 T 12-10-2018 Alide_0869 fccd9d0b8aa95f90f99da1ed149e63b9 306 SUPERFAMILY SSF52540 4 230 7.56E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0869 fccd9d0b8aa95f90f99da1ed149e63b9 306 Pfam PF00005 ABC transporter 23 165 5.5E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1966 ea4e320f8838463d144c60450873562b 863 SUPERFAMILY SSF52016 162 372 3.66E-63 T 12-10-2018 Alide_1966 ea4e320f8838463d144c60450873562b 863 ProSitePatterns PS01244 Aconitase family signature 2. 763 776 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_1966 ea4e320f8838463d144c60450873562b 863 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 855 0.0 T 12-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Alide_1966 ea4e320f8838463d144c60450873562b 863 Gene3D G3DSA:3.20.19.10 162 361 2.3E-68 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Alide_1966 ea4e320f8838463d144c60450873562b 863 Gene3D G3DSA:3.30.499.10 405 532 4.1E-147 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Alide_1966 ea4e320f8838463d144c60450873562b 863 Pfam PF11791 Aconitate B N-terminal domain 4 156 6.3E-65 T 12-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Alide_1966 ea4e320f8838463d144c60450873562b 863 Pfam PF00330 Aconitase family (aconitate hydratase) 473 817 2.4E-39 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1966 ea4e320f8838463d144c60450873562b 863 SUPERFAMILY SSF53732 380 856 3.27E-143 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Alide_1966 ea4e320f8838463d144c60450873562b 863 ProSitePatterns PS00450 Aconitase family signature 1. 705 722 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_1966 ea4e320f8838463d144c60450873562b 863 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 1.4E-94 T 12-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Alide_1966 ea4e320f8838463d144c60450873562b 863 SUPERFAMILY SSF74778 1 160 1.15E-68 T 12-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Alide_1966 ea4e320f8838463d144c60450873562b 863 Gene3D G3DSA:1.25.40.310 1 161 5.1E-69 T 12-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Alide_1966 ea4e320f8838463d144c60450873562b 863 Gene3D G3DSA:3.30.499.10 686 863 5.7E-62 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Alide_1966 ea4e320f8838463d144c60450873562b 863 Gene3D G3DSA:3.40.1060.10 385 684 4.1E-147 T 12-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Alide_1966 ea4e320f8838463d144c60450873562b 863 PIRSF PIRSF036687 1 861 0.0 T 12-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 Alide_1381 ebf9ea41c5c33692a1fba51cc194b6a1 215 Pfam PF04199 Putative cyclase 11 157 2.1E-15 T 12-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_1381 ebf9ea41c5c33692a1fba51cc194b6a1 215 Gene3D G3DSA:3.50.30.50 4 215 1.2E-64 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_1381 ebf9ea41c5c33692a1fba51cc194b6a1 215 SUPERFAMILY SSF102198 8 212 2.88E-55 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_1381 ebf9ea41c5c33692a1fba51cc194b6a1 215 TIGRFAM TIGR03035 trp_arylform: arylformamidase 8 214 4.8E-85 T 12-10-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_1381 ebf9ea41c5c33692a1fba51cc194b6a1 215 Hamap MF_01969 Kynurenine formamidase [kynB]. 8 214 41.878 T 12-10-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_4210 f825bc164478c142e58564b7b28f81b9 357 Pfam PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain 186 325 2.3E-31 T 12-10-2018 IPR003421 Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 Alide_4210 f825bc164478c142e58564b7b28f81b9 357 SUPERFAMILY SSF48179 186 356 1.16E-39 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_4210 f825bc164478c142e58564b7b28f81b9 357 Pfam PF02558 Ketopantoate reductase PanE/ApbA 9 153 1.3E-5 T 12-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain Alide_4210 f825bc164478c142e58564b7b28f81b9 357 SUPERFAMILY SSF51735 7 151 2.64E-15 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4210 f825bc164478c142e58564b7b28f81b9 357 Gene3D G3DSA:3.40.50.720 4 193 4.5E-29 T 12-10-2018 Alide_4210 f825bc164478c142e58564b7b28f81b9 357 Gene3D G3DSA:1.10.1040.10 194 345 5.7E-39 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_2814 b100ec24b2ac8dae344f773137ee588d 429 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 3 422 1.6E-67 T 12-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 Alide_2814 b100ec24b2ac8dae344f773137ee588d 429 SUPERFAMILY SSF48452 97 422 9.49E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_2814 b100ec24b2ac8dae344f773137ee588d 429 Gene3D G3DSA:1.25.40.10 344 429 2.4E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_2814 b100ec24b2ac8dae344f773137ee588d 429 Pfam PF07219 HemY protein N-terminus 26 144 3.4E-25 T 12-10-2018 IPR010817 HemY, N-terminal Alide_0638 e71f09d169a0505c4782f3cc2efa081f 162 Pfam PF01476 LysM domain 110 158 6.4E-11 T 12-10-2018 IPR018392 LysM domain Alide_0638 e71f09d169a0505c4782f3cc2efa081f 162 Gene3D G3DSA:3.10.350.10 109 157 4.9E-13 T 12-10-2018 IPR036779 LysM domain superfamily Alide_0638 e71f09d169a0505c4782f3cc2efa081f 162 SUPERFAMILY SSF54106 108 158 7.59E-7 T 12-10-2018 Alide_0638 e71f09d169a0505c4782f3cc2efa081f 162 SMART SM00257 109 158 1.8E-10 T 12-10-2018 IPR018392 LysM domain Alide_0638 e71f09d169a0505c4782f3cc2efa081f 162 Pfam PF04972 BON domain 41 101 4.0E-10 T 12-10-2018 IPR007055 BON domain Alide_4002 7fd4c7e4fdfb935ffe9a05ad5fff9bd6 175 Pfam PF11358 Protein of unknown function (DUF3158) 11 165 3.1E-73 T 12-10-2018 IPR021502 Protein of unknown function DUF3158 Alide_4209 f61385c54596e5e173858334873ad23c 232 SMART SM00953 69 202 5.7E-21 T 12-10-2018 IPR014914 RES domain Alide_4209 f61385c54596e5e173858334873ad23c 232 Pfam PF08808 RES domain 59 200 4.3E-25 T 12-10-2018 IPR014914 RES domain Alide_2449 ec9536774a723bc0f7bc869230a210dc 333 SUPERFAMILY SSF53850 23 330 4.98E-76 T 12-10-2018 Alide_2449 ec9536774a723bc0f7bc869230a210dc 333 Gene3D G3DSA:3.40.190.10 117 327 8.1E-116 T 12-10-2018 Alide_2449 ec9536774a723bc0f7bc869230a210dc 333 Pfam PF13531 Bacterial extracellular solute-binding protein 45 279 8.1E-40 T 12-10-2018 Alide_2449 ec9536774a723bc0f7bc869230a210dc 333 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 19 328 5.8E-116 T 12-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 Alide_2449 ec9536774a723bc0f7bc869230a210dc 333 Gene3D G3DSA:3.40.190.10 30 297 8.1E-116 T 12-10-2018 Alide_1268 62a4ae98a0bf480bad5d0037eaca1239 403 Pfam PF09684 Phage tail protein (Tail_P2_I) 8 111 2.2E-14 T 12-10-2018 IPR006521 Tail protein I Alide_0176 5e71a261440fd153367f26fbb3a68f61 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 321 1.9E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0176 5e71a261440fd153367f26fbb3a68f61 326 Gene3D G3DSA:3.40.190.10 127 253 7.3E-106 T 12-10-2018 Alide_0176 5e71a261440fd153367f26fbb3a68f61 326 PIRSF PIRSF017082 2 325 6.0E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0176 5e71a261440fd153367f26fbb3a68f61 326 SUPERFAMILY SSF53850 112 292 1.25E-17 T 12-10-2018 Alide_0176 5e71a261440fd153367f26fbb3a68f61 326 Gene3D G3DSA:3.40.190.150 31 318 7.3E-106 T 12-10-2018 Alide_0898 bdb3b3384b2d254f50b108d0cee4d773 262 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 17 44 4.0E-47 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Alide_0898 bdb3b3384b2d254f50b108d0cee4d773 262 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 96 114 4.0E-47 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Alide_0898 bdb3b3384b2d254f50b108d0cee4d773 262 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 114 140 4.0E-47 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Alide_0898 bdb3b3384b2d254f50b108d0cee4d773 262 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 165 193 4.0E-47 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Alide_0898 bdb3b3384b2d254f50b108d0cee4d773 262 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 19 237 1.5E-65 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Alide_0898 bdb3b3384b2d254f50b108d0cee4d773 262 Pfam PF00902 Sec-independent protein translocase protein (TatC) 20 232 8.9E-64 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Alide_0898 bdb3b3384b2d254f50b108d0cee4d773 262 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 252 16.533 T 12-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 SUPERFAMILY SSF82714 193 275 1.09E-17 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 SUPERFAMILY SSF82714 726 820 5.49E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 Gene3D G3DSA:1.20.1640.10 516 1038 1.8E-303 T 12-10-2018 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 Gene3D G3DSA:3.30.70.1430 570 675 1.8E-303 T 12-10-2018 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1051 0.0 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 Gene3D G3DSA:1.20.1640.10 15 515 1.8E-303 T 12-10-2018 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 SUPERFAMILY SSF82693 42 127 2.44E-23 T 12-10-2018 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 SUPERFAMILY SSF82866 299 506 1.11E-32 T 12-10-2018 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 Gene3D G3DSA:3.30.70.1440 676 883 1.8E-303 T 12-10-2018 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 Gene3D G3DSA:3.30.2090.10 189 280 1.8E-303 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 SUPERFAMILY SSF82693 569 668 1.88E-7 T 12-10-2018 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 Gene3D G3DSA:3.30.2090.10 727 826 1.8E-303 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 Pfam PF00873 AcrB/AcrD/AcrF family 6 1042 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 Gene3D G3DSA:3.30.70.1430 42 834 1.8E-303 T 12-10-2018 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 6.7E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 6.7E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 6.7E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 6.7E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 PRINTS PR00702 Acriflavin resistance protein family signature 624 638 6.7E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 6.7E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 6.7E-24 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 Gene3D G3DSA:3.30.70.1320 135 333 1.8E-303 T 12-10-2018 Alide_0222 82f58fc24bd3be1bc6410a86837c15fd 1062 SUPERFAMILY SSF82866 820 1044 1.16E-56 T 12-10-2018 Alide_2704 2386dd2e4725de894766c119794979bd 362 Gene3D G3DSA:3.40.50.80 222 361 1.8E-24 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_2704 2386dd2e4725de894766c119794979bd 362 PRINTS PR00410 Phenol hydroxylase reductase family signature 153 165 2.3E-16 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_2704 2386dd2e4725de894766c119794979bd 362 PRINTS PR00410 Phenol hydroxylase reductase family signature 256 265 2.3E-16 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_2704 2386dd2e4725de894766c119794979bd 362 PRINTS PR00410 Phenol hydroxylase reductase family signature 231 250 2.3E-16 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_2704 2386dd2e4725de894766c119794979bd 362 PRINTS PR00410 Phenol hydroxylase reductase family signature 328 336 2.3E-16 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_2704 2386dd2e4725de894766c119794979bd 362 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 224 2.3E-16 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_2704 2386dd2e4725de894766c119794979bd 362 SUPERFAMILY SSF63380 125 221 8.17E-25 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_2704 2386dd2e4725de894766c119794979bd 362 SUPERFAMILY SSF52343 225 361 1.57E-26 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_2704 2386dd2e4725de894766c119794979bd 362 Pfam PF00175 Oxidoreductase NAD-binding domain 232 341 1.1E-12 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Alide_2704 2386dd2e4725de894766c119794979bd 362 Gene3D G3DSA:2.40.30.10 121 221 1.4E-25 T 12-10-2018 Alide_2704 2386dd2e4725de894766c119794979bd 362 Pfam PF00970 Oxidoreductase FAD-binding domain 126 221 3.9E-15 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Alide_2704 2386dd2e4725de894766c119794979bd 362 SUPERFAMILY SSF54862 16 86 7.12E-14 T 12-10-2018 Alide_2704 2386dd2e4725de894766c119794979bd 362 Pfam PF12838 4Fe-4S dicluster domain 28 76 8.3E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_2704 2386dd2e4725de894766c119794979bd 362 Gene3D G3DSA:3.30.70.20 21 79 1.3E-9 T 12-10-2018 Alide_2432 7c414e4e89c112d867a5ec0e359021d3 115 Pfam PF01042 Endoribonuclease L-PSP 3 114 1.7E-27 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Alide_2432 7c414e4e89c112d867a5ec0e359021d3 115 Gene3D G3DSA:3.30.1330.40 1 115 7.2E-44 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Alide_2432 7c414e4e89c112d867a5ec0e359021d3 115 SUPERFAMILY SSF55298 1 114 8.8E-34 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Alide_2432 7c414e4e89c112d867a5ec0e359021d3 115 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 91 109 - T 12-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 Alide_3104 119fa92dc9c7f785f5471411c633959a 304 SUPERFAMILY SSF46785 11 115 5.06E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3104 119fa92dc9c7f785f5471411c633959a 304 Pfam PF03466 LysR substrate binding domain 93 297 1.7E-45 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3104 119fa92dc9c7f785f5471411c633959a 304 SUPERFAMILY SSF53850 94 300 1.65E-46 T 12-10-2018 Alide_3104 119fa92dc9c7f785f5471411c633959a 304 Gene3D G3DSA:1.10.10.10 8 94 3.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3104 119fa92dc9c7f785f5471411c633959a 304 Gene3D G3DSA:3.40.190.10 95 295 2.6E-70 T 12-10-2018 Alide_3104 119fa92dc9c7f785f5471411c633959a 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 2.6E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3104 119fa92dc9c7f785f5471411c633959a 304 Gene3D G3DSA:3.40.190.10 167 268 2.6E-70 T 12-10-2018 Alide_2636 859f38e9e1c1d97fa756740b303dafa2 489 Pfam PF13193 AMP-binding enzyme C-terminal domain 391 468 3.9E-10 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_2636 859f38e9e1c1d97fa756740b303dafa2 489 Gene3D G3DSA:3.30.300.30 380 481 1.1E-17 T 12-10-2018 Alide_2636 859f38e9e1c1d97fa756740b303dafa2 489 SUPERFAMILY SSF56801 17 477 7.33E-78 T 12-10-2018 Alide_2636 859f38e9e1c1d97fa756740b303dafa2 489 ProSitePatterns PS00455 Putative AMP-binding domain signature. 136 147 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_2636 859f38e9e1c1d97fa756740b303dafa2 489 Pfam PF00501 AMP-binding enzyme 127 382 1.6E-34 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_2636 859f38e9e1c1d97fa756740b303dafa2 489 Gene3D G3DSA:3.40.50.12780 25 379 9.2E-55 T 12-10-2018 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 SUPERFAMILY SSF51230 2 96 1.7E-23 T 12-10-2018 IPR011053 Single hybrid motif Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 Pfam PF00364 Biotin-requiring enzyme 119 190 2.3E-21 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 Pfam PF00364 Biotin-requiring enzyme 5 76 1.9E-22 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 Gene3D G3DSA:2.40.50.100 2 81 1.7E-21 T 12-10-2018 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 324 548 2.2E-78 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 141 170 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 Gene3D G3DSA:2.40.50.100 117 193 6.4E-21 T 12-10-2018 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 SUPERFAMILY SSF52777 311 549 1.78E-83 T 12-10-2018 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 Pfam PF02817 e3 binding domain 242 277 1.8E-16 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 93 549 6.1E-195 T 12-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 Gene3D G3DSA:3.30.559.10 307 549 6.9E-93 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 Gene3D G3DSA:4.10.320.10 243 285 2.0E-17 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 SUPERFAMILY SSF47005 236 280 5.36E-12 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Alide_2227 aaf0e641356032da542ff9e45e1d92d1 549 SUPERFAMILY SSF51230 118 210 5.89E-23 T 12-10-2018 IPR011053 Single hybrid motif Alide_1992 3eee50510a7beeb85c9091edb6ac433e 124 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 27 120 2.3E-29 T 12-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 Alide_1992 3eee50510a7beeb85c9091edb6ac433e 124 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 31 104 1.9E-15 T 12-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 185 210 8.5E-77 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 352 373 8.5E-77 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 8.5E-77 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 158 8.5E-77 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 317 324 8.5E-77 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 60 8.5E-77 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 417 432 8.5E-77 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 439 459 8.5E-77 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 274 288 8.5E-77 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 SUPERFAMILY SSF51905 1 347 1.94E-57 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 302 324 1.1E-41 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.1E-41 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 185 203 1.1E-41 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 1.1E-41 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 273 289 1.1E-41 T 12-10-2018 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 337 6.8E-68 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 Gene3D G3DSA:3.50.50.60 5 342 3.6E-108 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 Gene3D G3DSA:3.50.50.60 165 287 3.6E-108 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 SUPERFAMILY SSF55424 352 472 2.06E-41 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 473 1.3E-160 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 Gene3D G3DSA:3.30.390.30 355 475 1.4E-45 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 PIRSF PIRSF000350 1 474 4.0E-84 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Alide_2668 158b3becc9e4f1dd54ed707397b93e6f 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 356 465 3.3E-36 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Alide_1883 6547cf05511e118e1171acc9ed099778 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1883 6547cf05511e118e1171acc9ed099778 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1883 6547cf05511e118e1171acc9ed099778 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.7E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1883 6547cf05511e118e1171acc9ed099778 300 Gene3D G3DSA:3.40.190.10 166 269 3.7E-17 T 12-10-2018 Alide_1883 6547cf05511e118e1171acc9ed099778 300 Pfam PF03466 LysR substrate binding domain 91 298 4.0E-24 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1883 6547cf05511e118e1171acc9ed099778 300 Gene3D G3DSA:3.40.190.10 93 286 3.7E-17 T 12-10-2018 Alide_1883 6547cf05511e118e1171acc9ed099778 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.0E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1883 6547cf05511e118e1171acc9ed099778 300 SUPERFAMILY SSF46785 1 82 2.0E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1883 6547cf05511e118e1171acc9ed099778 300 SUPERFAMILY SSF53850 87 299 8.51E-26 T 12-10-2018 Alide_1883 6547cf05511e118e1171acc9ed099778 300 Gene3D G3DSA:1.10.10.10 1 84 7.9E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4097 36fa8a5054775fe2db76233432d3bd5a 255 Pfam PF13230 Glutamine amidotransferases class-II 1 253 7.8E-120 T 12-10-2018 IPR026869 Putative glutamine amidotransferase type 2 Alide_4097 36fa8a5054775fe2db76233432d3bd5a 255 SUPERFAMILY SSF56235 2 252 2.54E-48 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_4097 36fa8a5054775fe2db76233432d3bd5a 255 Gene3D G3DSA:3.60.20.10 1 255 1.2E-100 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_3177 c73ad172d2ee007872ee32975063baf0 493 Pfam PF13180 PDZ domain 285 375 8.0E-18 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 SUPERFAMILY SSF50494 45 276 1.24E-66 T 12-10-2018 IPR009003 Peptidase S1, PA clan Alide_3177 c73ad172d2ee007872ee32975063baf0 493 PRINTS PR00834 HtrA/DegQ protease family signature 325 337 3.8E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 PRINTS PR00834 HtrA/DegQ protease family signature 185 209 3.8E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 PRINTS PR00834 HtrA/DegQ protease family signature 145 165 3.8E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 PRINTS PR00834 HtrA/DegQ protease family signature 217 234 3.8E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 PRINTS PR00834 HtrA/DegQ protease family signature 239 256 3.8E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 PRINTS PR00834 HtrA/DegQ protease family signature 124 136 3.8E-52 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 SMART SM00228 404 482 4.4E-6 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 SMART SM00228 285 367 8.1E-11 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 Gene3D G3DSA:2.40.10.120 46 278 6.0E-82 T 12-10-2018 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 Gene3D G3DSA:2.30.42.10 400 493 2.0E-12 T 12-10-2018 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 Gene3D G3DSA:2.30.42.10 280 388 6.3E-27 T 12-10-2018 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 Pfam PF13365 Trypsin-like peptidase domain 115 246 8.2E-36 T 12-10-2018 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 SUPERFAMILY SSF50156 243 367 2.37E-23 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 SUPERFAMILY SSF50156 405 491 3.68E-11 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 Alide_3177 c73ad172d2ee007872ee32975063baf0 493 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 47 487 4.0E-148 T 12-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 Alide_4418 d0015e2502df8a5b6f2fb36b1c59bdf1 528 Gene3D G3DSA:3.90.76.10 35 190 4.5E-120 T 12-10-2018 Alide_4418 d0015e2502df8a5b6f2fb36b1c59bdf1 528 Gene3D G3DSA:3.10.105.10 266 503 4.5E-120 T 12-10-2018 Alide_4418 d0015e2502df8a5b6f2fb36b1c59bdf1 528 SUPERFAMILY SSF53850 25 513 7.42E-127 T 12-10-2018 Alide_4418 d0015e2502df8a5b6f2fb36b1c59bdf1 528 PIRSF PIRSF002741 22 524 6.3E-89 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Alide_4418 d0015e2502df8a5b6f2fb36b1c59bdf1 528 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 68 442 2.5E-85 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain Alide_4418 d0015e2502df8a5b6f2fb36b1c59bdf1 528 Gene3D G3DSA:3.40.190.10 191 511 4.5E-120 T 12-10-2018 Alide_3632 a35504d1fc29e8ac8a58e452dcda8d96 121 SMART SM00448 4 117 8.1E-42 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3632 a35504d1fc29e8ac8a58e452dcda8d96 121 SUPERFAMILY SSF52172 4 120 3.42E-39 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3632 a35504d1fc29e8ac8a58e452dcda8d96 121 Gene3D G3DSA:3.40.50.12740 4 121 4.5E-44 T 12-10-2018 Alide_3632 a35504d1fc29e8ac8a58e452dcda8d96 121 Pfam PF00072 Response regulator receiver domain 6 117 1.4E-31 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3962 47c6cd067887289b94d87bfaed730ee4 37 Pfam PF00444 Ribosomal protein L36 1 37 1.1E-16 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3962 47c6cd067887289b94d87bfaed730ee4 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 6.8E-20 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3962 47c6cd067887289b94d87bfaed730ee4 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.406 T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3962 47c6cd067887289b94d87bfaed730ee4 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 2.0E-8 T 12-10-2018 Alide_3962 47c6cd067887289b94d87bfaed730ee4 37 SUPERFAMILY SSF57840 1 37 5.62E-15 T 12-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3962 47c6cd067887289b94d87bfaed730ee4 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 12-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2450 1699ee4be79bd2924064c0773c722946 196 Gene3D G3DSA:3.40.50.1820 7 189 7.2E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2450 1699ee4be79bd2924064c0773c722946 196 Pfam PF06821 Serine hydrolase 16 180 8.8E-63 T 12-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 Alide_2450 1699ee4be79bd2924064c0773c722946 196 SUPERFAMILY SSF53474 15 178 1.44E-32 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0018 a45a35269f1e900ffe7ad9d9db1c70ca 159 SUPERFAMILY SSF54001 34 159 2.04E-36 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Alide_0018 a45a35269f1e900ffe7ad9d9db1c70ca 159 Gene3D G3DSA:3.90.1720.10 12 155 6.6E-37 T 12-10-2018 Alide_0018 a45a35269f1e900ffe7ad9d9db1c70ca 159 Pfam PF00877 NlpC/P60 family 53 157 3.3E-23 T 12-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain Alide_3854 c706bbdbc05f38e160d3b97c369f7455 467 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 34 93 3.9E-4 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_3854 c706bbdbc05f38e160d3b97c369f7455 467 SMART SM00382 185 368 6.9E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3854 c706bbdbc05f38e160d3b97c369f7455 467 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 30 462 4.5E-193 T 12-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_3854 c706bbdbc05f38e160d3b97c369f7455 467 SUPERFAMILY SSF52540 120 390 2.75E-94 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3854 c706bbdbc05f38e160d3b97c369f7455 467 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 14 463 1.1E-170 T 12-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_3854 c706bbdbc05f38e160d3b97c369f7455 467 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 375 384 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_3854 c706bbdbc05f38e160d3b97c369f7455 467 Gene3D G3DSA:3.40.50.12240 22 467 2.8E-154 T 12-10-2018 Alide_3854 c706bbdbc05f38e160d3b97c369f7455 467 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 173 384 1.3E-71 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_2460 459fe394d754636e35c09cc7902804f2 618 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 363 2.4E-123 T 12-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 Alide_2460 459fe394d754636e35c09cc7902804f2 618 SMART SM00382 37 184 1.5E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2460 459fe394d754636e35c09cc7902804f2 618 Pfam PF13177 DNA polymerase III, delta subunit 20 183 1.9E-40 T 12-10-2018 Alide_2460 459fe394d754636e35c09cc7902804f2 618 SUPERFAMILY SSF52540 31 227 3.17E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2460 459fe394d754636e35c09cc7902804f2 618 Gene3D G3DSA:3.40.50.300 13 182 8.4E-100 T 12-10-2018 Alide_2460 459fe394d754636e35c09cc7902804f2 618 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 238 372 5.0E-25 T 12-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 Alide_2460 459fe394d754636e35c09cc7902804f2 618 Gene3D G3DSA:1.10.8.60 8 245 8.4E-100 T 12-10-2018 Alide_2460 459fe394d754636e35c09cc7902804f2 618 Gene3D G3DSA:3.30.300.150 488 600 4.5E-8 T 12-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_2460 459fe394d754636e35c09cc7902804f2 618 SUPERFAMILY SSF48019 249 372 1.02E-26 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Alide_2460 459fe394d754636e35c09cc7902804f2 618 Gene3D G3DSA:1.20.272.10 247 369 2.5E-33 T 12-10-2018 Alide_2460 459fe394d754636e35c09cc7902804f2 618 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 493 614 2.8E-10 T 12-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_0702 4258c06f62b939675012361eda9bebee 476 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 257 273 - T 12-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Alide_0702 4258c06f62b939675012361eda9bebee 476 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 6 468 47.851 T 12-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 Alide_0702 4258c06f62b939675012361eda9bebee 476 SUPERFAMILY SSF51735 235 395 2.38E-79 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0702 4258c06f62b939675012361eda9bebee 476 SMART SM00997 235 395 5.0E-117 T 12-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Alide_0702 4258c06f62b939675012361eda9bebee 476 Gene3D G3DSA:3.40.50.720 237 395 1.7E-233 T 12-10-2018 Alide_0702 4258c06f62b939675012361eda9bebee 476 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 468 3.5E-185 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Alide_0702 4258c06f62b939675012361eda9bebee 476 SMART SM00996 10 475 0.0 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Alide_0702 4258c06f62b939675012361eda9bebee 476 PIRSF PIRSF001109 2 476 3.4E-188 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Alide_0702 4258c06f62b939675012361eda9bebee 476 Gene3D G3DSA:3.40.50.1480 13 476 1.7E-233 T 12-10-2018 Alide_0702 4258c06f62b939675012361eda9bebee 476 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 11 475 8.4E-143 T 12-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Alide_0702 4258c06f62b939675012361eda9bebee 476 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 235 395 2.6E-83 T 12-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Alide_0702 4258c06f62b939675012361eda9bebee 476 SUPERFAMILY SSF52283 9 476 6.23E-110 T 12-10-2018 Alide_0702 4258c06f62b939675012361eda9bebee 476 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 82 96 - T 12-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Alide_4042 81c6ba893f75b4972074dcf0e40df32f 646 Gene3D G3DSA:3.40.50.1820 356 618 2.6E-23 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4042 81c6ba893f75b4972074dcf0e40df32f 646 SUPERFAMILY SSF53474 358 608 1.82E-23 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4042 81c6ba893f75b4972074dcf0e40df32f 646 Pfam PF12697 Alpha/beta hydrolase family 365 625 2.8E-6 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2347 cce3394c17b56976361d5d25a22fa945 377 Pfam PF01571 Aminomethyltransferase folate-binding domain 13 259 4.7E-83 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain Alide_2347 cce3394c17b56976361d5d25a22fa945 377 Gene3D G3DSA:4.10.1250.10 237 285 3.6E-20 T 12-10-2018 Alide_2347 cce3394c17b56976361d5d25a22fa945 377 Gene3D G3DSA:3.30.70.1400 59 144 2.3E-79 T 12-10-2018 Alide_2347 cce3394c17b56976361d5d25a22fa945 377 SUPERFAMILY SSF101790 289 376 5.23E-24 T 12-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Alide_2347 cce3394c17b56976361d5d25a22fa945 377 SUPERFAMILY SSF103025 8 285 3.3E-81 T 12-10-2018 Alide_2347 cce3394c17b56976361d5d25a22fa945 377 Gene3D G3DSA:2.40.30.110 290 366 3.9E-26 T 12-10-2018 Alide_2347 cce3394c17b56976361d5d25a22fa945 377 PIRSF PIRSF006487 1 376 9.2E-75 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Alide_2347 cce3394c17b56976361d5d25a22fa945 377 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 9 370 3.6E-99 T 12-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Alide_2347 cce3394c17b56976361d5d25a22fa945 377 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 272 365 2.7E-19 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Alide_2347 cce3394c17b56976361d5d25a22fa945 377 Gene3D G3DSA:3.30.1360.120 10 236 2.3E-79 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Alide_1225 fb535e42215ebf8348477e4cef57e61c 286 Pfam PF00005 ABC transporter 27 160 2.6E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1225 fb535e42215ebf8348477e4cef57e61c 286 SUPERFAMILY SSF52540 11 213 1.18E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1225 fb535e42215ebf8348477e4cef57e61c 286 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1225 fb535e42215ebf8348477e4cef57e61c 286 Gene3D G3DSA:3.40.50.300 10 263 1.7E-59 T 12-10-2018 Alide_1225 fb535e42215ebf8348477e4cef57e61c 286 SMART SM00382 36 210 1.4E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2322 a0b6d45c665884e5274d88792461a811 320 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 315 2.4E-75 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2322 a0b6d45c665884e5274d88792461a811 320 Gene3D G3DSA:3.40.190.10 123 244 4.6E-104 T 12-10-2018 Alide_2322 a0b6d45c665884e5274d88792461a811 320 PIRSF PIRSF017082 1 318 4.2E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2322 a0b6d45c665884e5274d88792461a811 320 SUPERFAMILY SSF53850 86 281 7.24E-15 T 12-10-2018 Alide_2322 a0b6d45c665884e5274d88792461a811 320 Gene3D G3DSA:3.40.190.150 26 307 4.6E-104 T 12-10-2018 Alide_2976 b5ba3031f5da2e1c146c851fca7f08f8 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 255 2.3E-45 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_2976 b5ba3031f5da2e1c146c851fca7f08f8 256 Gene3D G3DSA:3.90.226.10 6 256 1.5E-64 T 12-10-2018 Alide_2976 b5ba3031f5da2e1c146c851fca7f08f8 256 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_2976 b5ba3031f5da2e1c146c851fca7f08f8 256 SUPERFAMILY SSF52096 1 247 5.41E-65 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2477 efb09eb69bbb12fbbed4582c1fc7b382 1095 SUPERFAMILY SSF52540 18 871 5.72E-90 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2477 efb09eb69bbb12fbbed4582c1fc7b382 1095 Pfam PF00580 UvrD/REP helicase N-terminal domain 18 454 8.5E-43 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Alide_2477 efb09eb69bbb12fbbed4582c1fc7b382 1095 Gene3D G3DSA:3.40.50.300 340 488 3.2E-27 T 12-10-2018 Alide_2477 efb09eb69bbb12fbbed4582c1fc7b382 1095 Gene3D G3DSA:3.40.50.300 13 228 1.4E-26 T 12-10-2018 Alide_2477 efb09eb69bbb12fbbed4582c1fc7b382 1095 Pfam PF12705 PD-(D/E)XK nuclease superfamily 932 1080 5.1E-5 T 12-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type Alide_2477 efb09eb69bbb12fbbed4582c1fc7b382 1095 Gene3D G3DSA:3.40.50.300 551 646 4.4E-16 T 12-10-2018 Alide_2477 efb09eb69bbb12fbbed4582c1fc7b382 1095 Pfam PF13361 UvrD-like helicase C-terminal domain 769 868 2.8E-8 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Alide_2477 efb09eb69bbb12fbbed4582c1fc7b382 1095 Gene3D G3DSA:3.40.50.300 718 891 6.0E-15 T 12-10-2018 Alide_2477 efb09eb69bbb12fbbed4582c1fc7b382 1095 Pfam PF13361 UvrD-like helicase C-terminal domain 550 674 7.9E-11 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 240 356 1.1E-36 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 SMART SM00853 470 614 1.6E-55 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 26 654 27.17 T 12-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 Gene3D G3DSA:3.30.565.10 27 231 2.1E-60 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 27 337 3.6E-88 T 12-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 SUPERFAMILY SSF118116 465 656 2.75E-59 T 12-10-2018 IPR037198 MutL, C-terminal domain superfamily Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 Gene3D G3DSA:3.30.1370.100 514 609 1.7E-60 T 12-10-2018 Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 SUPERFAMILY SSF55874 26 221 9.04E-50 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 118 124 - T 12-10-2018 IPR014762 DNA mismatch repair, conserved site Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 SUPERFAMILY SSF54211 233 357 1.86E-33 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 Gene3D G3DSA:2.30.42.20 472 651 1.7E-60 T 12-10-2018 Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 Gene3D G3DSA:3.30.230.10 244 356 1.4E-35 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 Pfam PF08676 MutL C terminal dimerisation domain 466 614 5.0E-49 T 12-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 49 151 3.0E-11 T 12-10-2018 Alide_1064 c5c880ae4b27ee329709455d0f53f4d2 658 SMART SM01340 239 357 6.2E-54 T 12-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 SUPERFAMILY SSF53254 1 244 4.71E-79 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 2 246 1.2E-118 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 128 3.8E-31 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 145 211 7.7E-5 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 228 45.5 T 12-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 Gene3D G3DSA:3.40.50.1240 1 247 2.6E-90 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 PIRSF PIRSF000709 137 228 0.21 T 12-10-2018 Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 PIRSF PIRSF000709 2 108 7.3E-8 T 12-10-2018 Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 12-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 Alide_3438 b5405b5998c616f2e2a067e6e6ec52cd 247 SMART SM00855 3 189 7.4E-29 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 SUPERFAMILY SSF50331 207 274 1.8E-19 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 Gene3D G3DSA:2.40.50.100 131 202 1.2E-25 T 12-10-2018 Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 Gene3D G3DSA:2.40.50.100 204 275 8.7E-27 T 12-10-2018 Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 32 93 1.2E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 29 117 4.0E-31 T 12-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 SUPERFAMILY SSF50331 133 205 1.85E-21 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 SUPERFAMILY SSF46785 13 119 1.27E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 Pfam PF03459 TOBE domain 209 271 2.9E-16 T 12-10-2018 IPR005116 Transport-associated OB, type 1 Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 Pfam PF03459 TOBE domain 135 199 9.8E-16 T 12-10-2018 IPR005116 Transport-associated OB, type 1 Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 133 202 9.0E-21 T 12-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 207 274 1.7E-19 T 12-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 Gene3D G3DSA:1.10.10.10 6 124 8.5E-36 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2461 0fcc0d155446eb2a48086b2de766d241 275 PIRSF PIRSF005763 11 275 8.9E-93 T 12-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 Alide_3726 5ff6e299a3226c010792254082fbea2c 128 Pfam PF00072 Response regulator receiver domain 5 117 3.8E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3726 5ff6e299a3226c010792254082fbea2c 128 SMART SM00448 3 117 1.0E-42 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3726 5ff6e299a3226c010792254082fbea2c 128 SUPERFAMILY SSF52172 3 120 4.27E-36 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3726 5ff6e299a3226c010792254082fbea2c 128 Gene3D G3DSA:3.40.50.12740 1 128 1.7E-41 T 12-10-2018 Alide_1941 4acab0392da83a680a22bbdd9402974f 126 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 14 98 4.0E-36 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Alide_1941 4acab0392da83a680a22bbdd9402974f 126 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 10 112 5.4E-22 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Alide_1941 4acab0392da83a680a22bbdd9402974f 126 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 10 111 24.13 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Alide_1941 4acab0392da83a680a22bbdd9402974f 126 SUPERFAMILY SSF89919 9 113 1.23E-27 T 12-10-2018 IPR023799 Ribosome-binding factor A domain superfamily Alide_1941 4acab0392da83a680a22bbdd9402974f 126 Gene3D G3DSA:3.30.300.20 6 106 1.0E-27 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta Alide_1941 4acab0392da83a680a22bbdd9402974f 126 Pfam PF02033 Ribosome-binding factor A 13 111 3.9E-26 T 12-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 Gene3D G3DSA:1.10.287.130 333 411 9.4E-22 T 12-10-2018 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 SMART SM00387 458 571 3.8E-38 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 Gene3D G3DSA:3.30.565.10 412 573 2.8E-44 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 Pfam PF00512 His Kinase A (phospho-acceptor) domain 346 411 2.3E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 SMART SM00388 346 411 4.6E-20 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 Gene3D G3DSA:3.30.450.20 206 294 8.1E-14 T 12-10-2018 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 459 570 1.8E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 SUPERFAMILY SSF55874 401 572 2.75E-43 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 496 510 1.7E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 549 1.7E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 514 524 1.7E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 555 568 1.7E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 Gene3D G3DSA:3.30.450.20 45 203 2.9E-18 T 12-10-2018 Alide_3729 552cab8c585feb53815a5ae3eee2615b 585 SUPERFAMILY SSF47384 332 412 3.14E-19 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 Pfam PF05048 Periplasmic copper-binding protein (NosD) 144 368 5.4E-61 T 12-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00722 193 352 0.035 T 12-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00722 39 187 1.3E-9 T 12-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SUPERFAMILY SSF51126 26 391 6.29E-70 T 12-10-2018 IPR011050 Pectin lyase fold/virulence factor Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 Gene3D G3DSA:2.160.20.10 182 348 1.3E-19 T 12-10-2018 IPR012334 Pectin lyase fold Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 250 292 1.3E-5 T 12-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 TIGRFAM TIGR04247 NosD_copper_fam: nitrous oxide reductase family maturation protein NosD 32 405 6.3E-140 T 12-10-2018 IPR026464 Nitrous oxide reductase family maturation protein NosD Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 Gene3D G3DSA:2.160.20.10 17 181 3.2E-18 T 12-10-2018 IPR012334 Pectin lyase fold Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00710 137 166 83.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00710 301 338 4700.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00710 189 210 670.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00710 85 113 58.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00710 233 255 1100.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00710 167 188 1500.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00710 256 277 97.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00710 115 136 2000.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat Alide_3079 ad955b3cf536265d6d5214c0e253c600 422 SMART SM00710 278 299 280.0 T 12-10-2018 IPR006626 Parallel beta-helix repeat Alide_3192 f1d512af1ee30b922048b207c8741ebf 346 Pfam PF01343 Peptidase family S49 161 309 3.9E-37 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Alide_3192 f1d512af1ee30b922048b207c8741ebf 346 SUPERFAMILY SSF52096 74 297 9.59E-44 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3192 f1d512af1ee30b922048b207c8741ebf 346 Gene3D G3DSA:3.40.1750.20 200 266 3.6E-63 T 12-10-2018 Alide_3192 f1d512af1ee30b922048b207c8741ebf 346 Gene3D G3DSA:3.90.226.10 100 299 3.6E-63 T 12-10-2018 Alide_4244 750cf2447698823a12b6b742c4f03425 380 Gene3D G3DSA:2.40.30.170 52 284 4.4E-66 T 12-10-2018 Alide_4244 750cf2447698823a12b6b742c4f03425 380 Gene3D G3DSA:1.10.287.470 105 172 4.4E-66 T 12-10-2018 Alide_4244 750cf2447698823a12b6b742c4f03425 380 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 357 2.1E-63 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_4244 750cf2447698823a12b6b742c4f03425 380 Gene3D G3DSA:2.40.420.20 40 343 4.4E-66 T 12-10-2018 Alide_4244 750cf2447698823a12b6b742c4f03425 380 SUPERFAMILY SSF111369 57 279 8.63E-24 T 12-10-2018 Alide_4244 750cf2447698823a12b6b742c4f03425 380 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 51 278 5.4E-16 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_4244 750cf2447698823a12b6b742c4f03425 380 Gene3D G3DSA:2.40.50.100 66 207 4.4E-66 T 12-10-2018 Alide_2255 91dcff2be33f0d7d9cdf240b52ab3587 398 ProSitePatterns PS00216 Sugar transport proteins signature 1. 70 87 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_2255 91dcff2be33f0d7d9cdf240b52ab3587 398 Pfam PF07690 Major Facilitator Superfamily 20 255 6.0E-25 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_2255 91dcff2be33f0d7d9cdf240b52ab3587 398 Gene3D G3DSA:1.20.1250.20 12 386 2.1E-51 T 12-10-2018 Alide_2255 91dcff2be33f0d7d9cdf240b52ab3587 398 SUPERFAMILY SSF103473 13 388 4.19E-62 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_0616 b919570d82c04e1cd84535ed201eec61 762 SUPERFAMILY SSF56935 30 761 1.95E-117 T 12-10-2018 Alide_0616 b919570d82c04e1cd84535ed201eec61 762 Gene3D G3DSA:2.170.130.10 55 182 1.1E-37 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_0616 b919570d82c04e1cd84535ed201eec61 762 Gene3D G3DSA:2.40.170.20 185 762 2.6E-111 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Alide_0616 b919570d82c04e1cd84535ed201eec61 762 Pfam PF07715 TonB-dependent Receptor Plug Domain 73 171 2.5E-16 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_0616 b919570d82c04e1cd84535ed201eec61 762 Pfam PF00593 TonB dependent receptor 262 760 1.2E-45 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_3731 9e10dce7ee3dba519ebe36941272c731 320 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 13 317 57.28 T 12-10-2018 IPR023009 Tyrosine recombinase XerC/XerD Alide_3731 9e10dce7ee3dba519ebe36941272c731 320 SUPERFAMILY SSF56349 17 311 8.54E-51 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_3731 9e10dce7ee3dba519ebe36941272c731 320 Gene3D G3DSA:1.10.443.10 118 311 4.4E-53 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_3731 9e10dce7ee3dba519ebe36941272c731 320 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 17 97 1.9E-13 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Alide_3731 9e10dce7ee3dba519ebe36941272c731 320 Gene3D G3DSA:1.10.150.130 15 106 2.7E-14 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_3731 9e10dce7ee3dba519ebe36941272c731 320 Pfam PF00589 Phage integrase family 120 303 3.0E-39 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_3505 eb07db6e70776b5a8a2b8d75b5cf156c 331 Gene3D G3DSA:3.40.190.10 133 256 1.8E-109 T 12-10-2018 Alide_3505 eb07db6e70776b5a8a2b8d75b5cf156c 331 PIRSF PIRSF017082 1 330 1.6E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3505 eb07db6e70776b5a8a2b8d75b5cf156c 331 Gene3D G3DSA:3.40.190.150 35 321 1.8E-109 T 12-10-2018 Alide_3505 eb07db6e70776b5a8a2b8d75b5cf156c 331 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 325 1.3E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3505 eb07db6e70776b5a8a2b8d75b5cf156c 331 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 5 25 9.7E-4 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Alide_3505 eb07db6e70776b5a8a2b8d75b5cf156c 331 SUPERFAMILY SSF53850 121 289 3.53E-13 T 12-10-2018 Alide_2457 852da6aaea85f4e3ee49f2067aab4029 129 Pfam PF01124 MAPEG family 6 126 1.3E-23 T 12-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein Alide_2457 852da6aaea85f4e3ee49f2067aab4029 129 Gene3D G3DSA:1.20.120.550 2 126 2.1E-16 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily Alide_2457 852da6aaea85f4e3ee49f2067aab4029 129 SUPERFAMILY SSF161084 4 124 6.15E-25 T 12-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 Gene3D G3DSA:3.40.50.970 175 534 1.5E-136 T 12-10-2018 Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 SUPERFAMILY SSF52518 129 554 1.28E-80 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 Pfam PF00676 Dehydrogenase E1 component 223 507 4.4E-39 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 Gene3D G3DSA:1.10.287.1150 93 174 1.6E-22 T 12-10-2018 Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 15 52 1.6E-17 T 12-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 804 948 2.5E-55 T 12-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 Pfam PF02779 Transketolase, pyrimidine binding domain 602 799 6.0E-62 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 Gene3D G3DSA:3.40.50.12470 566 815 1.1E-166 T 12-10-2018 Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 17 947 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 PIRSF PIRSF000157 1 950 0.0 T 12-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 SUPERFAMILY SSF52518 585 806 4.29E-47 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 Gene3D G3DSA:3.40.50.11610 736 945 1.1E-166 T 12-10-2018 Alide_2670 b0ad1eaa2f202e19346eaaca1f7a5512 958 SMART SM00861 602 799 6.5E-61 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_3523 f8fa9757771669f4ce28e1f68f7bc4b6 398 SUPERFAMILY SSF89796 1 396 1.16E-123 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3523 f8fa9757771669f4ce28e1f68f7bc4b6 398 Gene3D G3DSA:3.30.1540.10 225 316 1.2E-121 T 12-10-2018 Alide_3523 f8fa9757771669f4ce28e1f68f7bc4b6 398 Gene3D G3DSA:3.40.50.10540 3 355 1.2E-121 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3523 f8fa9757771669f4ce28e1f68f7bc4b6 398 Pfam PF02515 CoA-transferase family III 4 359 4.5E-116 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 SUPERFAMILY SSF51735 168 319 3.54E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 PIRSF PIRSF000445 1 436 9.6E-134 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 SUPERFAMILY SSF69742 1 163 9.42E-40 T 12-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 104 127 - T 12-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 161 2.2E-42 T 12-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 428 26.724 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 SUPERFAMILY SSF69075 322 428 3.27E-17 T 12-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 325 428 3.0E-26 T 12-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 Gene3D G3DSA:3.40.50.720 166 318 2.0E-43 T 12-10-2018 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 Gene3D G3DSA:3.30.460.30 2 163 4.8E-48 T 12-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 5 427 1.3E-107 T 12-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Alide_0938 4e112cff024cbe22c9ba8c046f26c3b3 437 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 177 311 3.3E-44 T 12-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Alide_2297 4bcbf942fad5f197d6c6cdaed71e0c72 148 Pfam PF02566 OsmC-like protein 38 137 4.0E-12 T 12-10-2018 IPR003718 OsmC/Ohr family Alide_2297 4bcbf942fad5f197d6c6cdaed71e0c72 148 Gene3D G3DSA:3.30.300.20 7 138 1.1E-18 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta Alide_2297 4bcbf942fad5f197d6c6cdaed71e0c72 148 SUPERFAMILY SSF82784 7 139 3.93E-23 T 12-10-2018 IPR036102 OsmC/Ohr superfamily Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 342 34.402 T 12-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 Pfam PF02911 Formyl transferase, C-terminal domain 239 339 6.0E-24 T 12-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 SUPERFAMILY SSF53328 1 107 1.44E-19 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 168 191 - T 12-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 Pfam PF00551 Formyl transferase 2 107 3.4E-7 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 Pfam PF00551 Formyl transferase 136 215 9.2E-26 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 SUPERFAMILY SSF50486 240 347 3.92E-28 T 12-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 Gene3D G3DSA:3.40.50.170 130 241 1.7E-38 T 12-10-2018 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 Gene3D G3DSA:3.40.50.170 1 111 1.1E-25 T 12-10-2018 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 SUPERFAMILY SSF53328 136 242 3.4E-36 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_4272 4c904e7391ed6b01f72ef4303a0be85b 351 Gene3D G3DSA:3.10.25.10 242 350 1.7E-27 T 12-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 Gene3D G3DSA:3.40.50.670 739 858 1.2E-26 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 ProSitePatterns PS00177 DNA topoisomerase II signature. 465 473 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 SMART SM00433 52 853 8.4E-245 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 19 860 94.755 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 Pfam PF01751 Toprim domain 462 585 2.8E-18 T 12-10-2018 IPR006171 TOPRIM domain Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 SUPERFAMILY SSF54211 254 435 6.45E-55 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 22 860 2.0E-281 T 12-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR00418 DNA topoisomerase II family signature 134 148 7.5E-68 T 12-10-2018 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR00418 DNA topoisomerase II family signature 559 576 7.5E-68 T 12-10-2018 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR00418 DNA topoisomerase II family signature 52 67 7.5E-68 T 12-10-2018 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR00418 DNA topoisomerase II family signature 463 477 7.5E-68 T 12-10-2018 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR00418 DNA topoisomerase II family signature 792 808 7.5E-68 T 12-10-2018 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR00418 DNA topoisomerase II family signature 311 324 7.5E-68 T 12-10-2018 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR00418 DNA topoisomerase II family signature 579 591 7.5E-68 T 12-10-2018 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR00418 DNA topoisomerase II family signature 541 557 7.5E-68 T 12-10-2018 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR00418 DNA topoisomerase II family signature 87 100 7.5E-68 T 12-10-2018 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 Pfam PF00204 DNA gyrase B 254 433 1.4E-56 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 49 206 5.7E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 792 849 1.8E-29 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 SUPERFAMILY SSF56719 437 850 3.66E-84 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 SMART SM00387 48 208 1.0E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 417 437 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 285 303 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 829 845 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 214 229 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 403 417 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 355 371 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 229 242 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 813 825 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 253 275 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 513 522 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 PRINTS PR01159 DNA gyrase subunit B signature 22 32 2.9E-76 T 12-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 Gene3D G3DSA:3.30.565.10 20 253 2.7E-88 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 SUPERFAMILY SSF55874 22 247 7.86E-64 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 Gene3D G3DSA:3.30.230.10 254 435 4.0E-69 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_0003 f1c89e983fc3f39489b1f32c403ef27e 860 Gene3D G3DSA:3.40.50.670 441 623 2.2E-73 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_0557 8ae7b84cb75d3cfb88b1e07334386f10 398 Gene3D G3DSA:3.30.1540.10 223 321 2.5E-110 T 12-10-2018 Alide_0557 8ae7b84cb75d3cfb88b1e07334386f10 398 Pfam PF02515 CoA-transferase family III 4 368 1.4E-105 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0557 8ae7b84cb75d3cfb88b1e07334386f10 398 Gene3D G3DSA:3.40.50.10540 3 385 2.5E-110 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0557 8ae7b84cb75d3cfb88b1e07334386f10 398 SUPERFAMILY SSF89796 1 390 7.19E-117 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 66 1.3E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 66 82 1.3E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 Gene3D G3DSA:3.40.1410.10 100 262 2.8E-49 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 Pfam PF00392 Bacterial regulatory proteins, gntR family 29 92 6.1E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 SMART SM00345 33 92 5.5E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 SUPERFAMILY SSF64288 81 262 5.34E-38 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 SMART SM00866 115 257 3.5E-29 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 Gene3D G3DSA:1.10.10.10 25 93 5.6E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 Pfam PF07702 UTRA domain 123 256 2.6E-32 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_1962 2eb3655c05f993be1f37ade4c96dd38a 263 SUPERFAMILY SSF46785 27 96 3.48E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 12 942 20.075 T 12-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 38 673 5.1E-175 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 Pfam PF06827 Zinc finger found in FPG and IleRS 912 938 9.1E-8 T 12-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 415 430 3.4E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 554 567 3.4E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 245 268 3.4E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 61 72 3.4E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 593 602 3.4E-31 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 SUPERFAMILY SSF50677 211 417 9.52E-43 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 Gene3D G3DSA:3.90.740.10 202 422 6.5E-207 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 Pfam PF08264 Anticodon-binding domain of tRNA 717 866 2.3E-25 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 25 868 3.7E-252 T 12-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 Gene3D G3DSA:3.40.50.620 36 660 6.5E-207 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 Gene3D G3DSA:1.10.730.20 672 942 4.3E-90 T 12-10-2018 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 68 79 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 SUPERFAMILY SSF47323 684 941 4.49E-73 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_1177 cddf844ae4a37cf9a7185b44d7442ce7 951 SUPERFAMILY SSF52374 14 680 1.83E-127 T 12-10-2018 Alide_1858 30b5b45ba8a29debc9b794d2cb17e908 225 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 12 222 9.4E-51 T 12-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Alide_1858 30b5b45ba8a29debc9b794d2cb17e908 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 98 190 7.4E-8 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1858 30b5b45ba8a29debc9b794d2cb17e908 225 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 107 186 8.2E-10 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1858 30b5b45ba8a29debc9b794d2cb17e908 225 Gene3D G3DSA:1.10.150.240 24 90 1.0E-49 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Alide_1858 30b5b45ba8a29debc9b794d2cb17e908 225 Gene3D G3DSA:3.40.50.1000 12 211 1.0E-49 T 12-10-2018 IPR023214 HAD superfamily Alide_1858 30b5b45ba8a29debc9b794d2cb17e908 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 191 3.6E-31 T 12-10-2018 Alide_1858 30b5b45ba8a29debc9b794d2cb17e908 225 SUPERFAMILY SSF56784 10 222 6.37E-55 T 12-10-2018 IPR036412 HAD-like superfamily Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 369 9.5E-110 T 12-10-2018 IPR028053 Membrane insertase YidC, N-terminal Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 Pfam PF14849 YidC periplasmic domain 87 361 1.2E-79 T 12-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 Pfam PF02096 60Kd inner membrane protein 372 550 9.9E-60 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 Gene3D G3DSA:2.70.98.90 84 351 4.9E-82 T 12-10-2018 IPR038221 YidC, periplasmic domain superfamily Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR01900 YidC translocation/secretion protein signature 505 529 7.4E-20 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR01900 YidC translocation/secretion protein signature 486 501 7.4E-20 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR01900 YidC translocation/secretion protein signature 357 373 7.4E-20 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR00701 60kDa inner membrane protein signature 516 539 9.6E-71 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR00701 60kDa inner membrane protein signature 433 456 9.6E-71 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR00701 60kDa inner membrane protein signature 93 114 9.6E-71 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR00701 60kDa inner membrane protein signature 480 502 9.6E-71 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR00701 60kDa inner membrane protein signature 180 200 9.6E-71 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR00701 60kDa inner membrane protein signature 3 24 9.6E-71 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR00701 60kDa inner membrane protein signature 234 252 9.6E-71 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR00701 60kDa inner membrane protein signature 342 362 9.6E-71 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 PRINTS PR00701 60kDa inner membrane protein signature 269 284 9.6E-71 T 12-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 552 23.333 T 12-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 Alide_4419 8bd3278f7948dc4969c39c306c62faf5 564 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 371 550 1.2E-68 T 12-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.8E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.8E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.8E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 SUPERFAMILY SSF46785 1 83 2.85E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 Gene3D G3DSA:1.10.10.10 7 98 1.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 Gene3D G3DSA:3.40.190.10 103 289 1.9E-45 T 12-10-2018 Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 4.0E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 Pfam PF03466 LysR substrate binding domain 94 293 7.1E-30 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 Gene3D G3DSA:3.40.190.10 164 262 1.9E-45 T 12-10-2018 Alide_0940 210c65608bf97bb3ec07cb43b8206f9b 297 SUPERFAMILY SSF53850 94 294 1.52E-32 T 12-10-2018 Alide_4614 80525347e95c5e15fed70119f0215f05 914 SUPERFAMILY SSF50692 776 914 4.14E-32 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Alide_4614 80525347e95c5e15fed70119f0215f05 914 SUPERFAMILY SSF53706 42 681 4.45E-137 T 12-10-2018 Alide_4614 80525347e95c5e15fed70119f0215f05 914 Pfam PF00384 Molybdopterin oxidoreductase 128 641 2.4E-50 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_4614 80525347e95c5e15fed70119f0215f05 914 Pfam PF01568 Molydopterin dinucleotide binding domain 784 882 7.1E-15 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Alide_4614 80525347e95c5e15fed70119f0215f05 914 TIGRFAM TIGR03479 DMSO_red_II_alp: DMSO reductase family type II enzyme, molybdopterin subunit 10 912 0.0 T 12-10-2018 IPR017840 DMSO reductase family, type II, molybdopterin subunit GO:0016491|GO:0055114 Alide_4614 80525347e95c5e15fed70119f0215f05 914 Gene3D G3DSA:3.40.50.740 52 914 2.3E-238 T 12-10-2018 Alide_1882 427513c6c0b6ff739839f15b2674bb7a 446 Gene3D G3DSA:1.20.1250.20 32 446 1.1E-64 T 12-10-2018 Alide_1882 427513c6c0b6ff739839f15b2674bb7a 446 Pfam PF00083 Sugar (and other) transporter 253 435 2.0E-9 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Alide_1882 427513c6c0b6ff739839f15b2674bb7a 446 Pfam PF00083 Sugar (and other) transporter 38 233 1.7E-19 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Alide_1882 427513c6c0b6ff739839f15b2674bb7a 446 ProSitePatterns PS00216 Sugar transport proteins signature 1. 95 111 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_1882 427513c6c0b6ff739839f15b2674bb7a 446 SUPERFAMILY SSF103473 32 440 4.84E-62 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1882 427513c6c0b6ff739839f15b2674bb7a 446 ProSitePatterns PS00216 Sugar transport proteins signature 1. 310 326 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_1882 427513c6c0b6ff739839f15b2674bb7a 446 ProSitePatterns PS00217 Sugar transport proteins signature 2. 145 170 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_0360 b7ddd3f866cfeb462cccae64ed702cad 384 SUPERFAMILY SSF53822 20 374 2.19E-77 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_0360 b7ddd3f866cfeb462cccae64ed702cad 384 Gene3D G3DSA:3.40.50.2300 23 347 3.9E-74 T 12-10-2018 Alide_0360 b7ddd3f866cfeb462cccae64ed702cad 384 Pfam PF13458 Periplasmic binding protein 22 371 4.2E-64 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_0360 b7ddd3f866cfeb462cccae64ed702cad 384 Gene3D G3DSA:3.40.50.2300 144 274 3.9E-74 T 12-10-2018 Alide_0360 b7ddd3f866cfeb462cccae64ed702cad 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 44 60 1.1E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_0360 b7ddd3f866cfeb462cccae64ed702cad 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 22 38 1.1E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_0360 b7ddd3f866cfeb462cccae64ed702cad 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 255 273 1.1E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3027 85dc3852c2bfc3a7a08d1c4f0ed423bf 382 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 16 364 30.915 T 12-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 Alide_3027 85dc3852c2bfc3a7a08d1c4f0ed423bf 382 Pfam PF13393 Histidyl-tRNA synthetase 10 313 1.2E-110 T 12-10-2018 Alide_3027 85dc3852c2bfc3a7a08d1c4f0ed423bf 382 PIRSF PIRSF001549 5 331 2.3E-42 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Alide_3027 85dc3852c2bfc3a7a08d1c4f0ed423bf 382 SUPERFAMILY SSF55681 4 316 5.22E-54 T 12-10-2018 Alide_3027 85dc3852c2bfc3a7a08d1c4f0ed423bf 382 Gene3D G3DSA:3.30.930.10 3 322 1.9E-66 T 12-10-2018 Alide_0819 7a8239915aeb72a777428791f939e2d7 96 SMART SM00883 2 94 6.9E-58 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Alide_0819 7a8239915aeb72a777428791f939e2d7 96 SUPERFAMILY SSF50129 1 95 6.8E-35 T 12-10-2018 IPR011032 GroES-like superfamily Alide_0819 7a8239915aeb72a777428791f939e2d7 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 12-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 Alide_0819 7a8239915aeb72a777428791f939e2d7 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 1.0E-35 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Alide_0819 7a8239915aeb72a777428791f939e2d7 96 PRINTS PR00297 10kDa chaperonin signature 3 18 9.7E-33 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Alide_0819 7a8239915aeb72a777428791f939e2d7 96 PRINTS PR00297 10kDa chaperonin signature 25 46 9.7E-33 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Alide_0819 7a8239915aeb72a777428791f939e2d7 96 PRINTS PR00297 10kDa chaperonin signature 81 94 9.7E-33 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Alide_0819 7a8239915aeb72a777428791f939e2d7 96 PRINTS PR00297 10kDa chaperonin signature 60 72 9.7E-33 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Alide_0819 7a8239915aeb72a777428791f939e2d7 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 26.637 T 12-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Alide_0819 7a8239915aeb72a777428791f939e2d7 96 Gene3D G3DSA:2.30.33.40 1 96 4.1E-38 T 12-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 Alide_1050 5370ea65430c4602a209be8c7bd4a762 163 Gene3D G3DSA:1.10.10.1590 1 73 4.2E-24 T 12-10-2018 Alide_1050 5370ea65430c4602a209be8c7bd4a762 163 SUPERFAMILY SSF52833 3 158 9.95E-51 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_1050 5370ea65430c4602a209be8c7bd4a762 163 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 13 156 7.6E-51 T 12-10-2018 Alide_1050 5370ea65430c4602a209be8c7bd4a762 163 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 12 156 5.8E-58 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1050 5370ea65430c4602a209be8c7bd4a762 163 Gene3D G3DSA:3.40.30.10 74 163 4.1E-26 T 12-10-2018 Alide_1050 5370ea65430c4602a209be8c7bd4a762 163 PIRSF PIRSF000216 1 163 2.5E-61 T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1050 5370ea65430c4602a209be8c7bd4a762 163 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 113 131 - T 12-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1367 b67833e03a97c0a289c0edd501a788f0 432 Gene3D G3DSA:3.30.9.10 129 350 1.1E-74 T 12-10-2018 Alide_1367 b67833e03a97c0a289c0edd501a788f0 432 Gene3D G3DSA:3.50.50.60 36 389 1.1E-74 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1367 b67833e03a97c0a289c0edd501a788f0 432 Pfam PF01266 FAD dependent oxidoreductase 36 388 8.1E-58 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_1367 b67833e03a97c0a289c0edd501a788f0 432 SUPERFAMILY SSF51905 35 405 4.34E-45 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0464 204b7f6d0b262ac9bd0029ab39d6ba4b 188 Gene3D G3DSA:1.20.1440.20 14 188 2.4E-12 T 12-10-2018 IPR023353 LemA-like domain superfamily Alide_0464 204b7f6d0b262ac9bd0029ab39d6ba4b 188 SUPERFAMILY SSF140478 89 184 5.49E-10 T 12-10-2018 IPR023353 LemA-like domain superfamily Alide_0464 204b7f6d0b262ac9bd0029ab39d6ba4b 188 Pfam PF04011 LemA family 152 184 1.6E-6 T 12-10-2018 IPR007156 LemA Alide_3319 4676973c2ea79cb6be1b9aeee7391acc 240 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 8 221 4.3E-35 T 12-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain Alide_3430 f33296c557d91a6fdcbc94c00f82b6b6 508 Pfam PF07364 Metallopeptidase family M81 3 292 3.4E-86 T 12-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal Alide_3430 f33296c557d91a6fdcbc94c00f82b6b6 508 PIRSF PIRSF012702 1 503 1.1E-172 T 12-10-2018 IPR009197 Microcystin LR degradation protein MlrC Alide_3430 f33296c557d91a6fdcbc94c00f82b6b6 508 Pfam PF07171 MlrC C-terminus 302 483 3.4E-54 T 12-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal Alide_3293 e5e57196001e88e808483d04392060be 285 Pfam PF09339 IclR helix-turn-helix domain 4 51 2.2E-10 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_3293 e5e57196001e88e808483d04392060be 285 Pfam PF01614 Bacterial transcriptional regulator 123 237 1.2E-18 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_3293 e5e57196001e88e808483d04392060be 285 SUPERFAMILY SSF55781 67 240 2.03E-37 T 12-10-2018 Alide_3293 e5e57196001e88e808483d04392060be 285 SUPERFAMILY SSF46785 2 73 4.36E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3293 e5e57196001e88e808483d04392060be 285 SMART SM00346 2 91 1.4E-20 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_3293 e5e57196001e88e808483d04392060be 285 Gene3D G3DSA:1.10.10.10 1 70 5.2E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3293 e5e57196001e88e808483d04392060be 285 Gene3D G3DSA:3.30.450.40 72 234 1.1E-40 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 Gene3D G3DSA:3.40.50.300 10 269 6.8E-67 T 12-10-2018 Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 ProSitePatterns PS00211 ABC transporters family signature. 434 448 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 Pfam PF00005 ABC transporter 19 175 4.7E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 Pfam PF00005 ABC transporter 329 462 4.5E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 SUPERFAMILY SSF52540 308 509 3.91E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 Gene3D G3DSA:1.10.287.380 550 628 8.2E-20 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 SMART SM00382 337 508 2.0E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 SMART SM00382 28 220 7.1E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 SUPERFAMILY SSF52540 9 221 1.13E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 Gene3D G3DSA:3.40.50.300 276 544 1.5E-61 T 12-10-2018 Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 Pfam PF12848 ABC transporter 214 283 2.2E-12 T 12-10-2018 IPR032781 ABC-transporter extension domain Alide_3835 506059bde2f2e96d1e3f17931e2ddd6a 628 Pfam PF16326 ABC transporter C-terminal domain 559 627 6.4E-20 T 12-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SUPERFAMILY SSF55785 250 369 8.95E-14 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Pfam PF13426 PAS domain 268 370 1.2E-9 T 12-10-2018 IPR000014 PAS domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SMART SM00267 372 543 1.4E-59 T 12-10-2018 IPR000160 GGDEF domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 261 378 8.8E-8 T 12-10-2018 IPR000014 PAS domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Gene3D G3DSA:3.30.450.20 5 132 4.2E-7 T 12-10-2018 Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Gene3D G3DSA:3.20.20.450 557 806 2.2E-97 T 12-10-2018 IPR035919 EAL domain superfamily Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SMART SM00091 134 201 1.3E-4 T 12-10-2018 IPR000014 PAS domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SMART SM00091 257 325 0.078 T 12-10-2018 IPR000014 PAS domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SMART SM00091 6 72 0.007 T 12-10-2018 IPR000014 PAS domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SUPERFAMILY SSF55073 388 545 1.33E-50 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SMART SM00052 553 798 1.1E-117 T 12-10-2018 IPR001633 EAL domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Gene3D G3DSA:3.30.70.270 377 556 6.4E-60 T 12-10-2018 Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SUPERFAMILY SSF141868 558 805 1.29E-87 T 12-10-2018 IPR035919 EAL domain superfamily Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SUPERFAMILY SSF55785 121 247 3.43E-10 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Pfam PF00563 EAL domain 560 792 5.3E-72 T 12-10-2018 IPR001633 EAL domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Gene3D G3DSA:3.30.450.20 133 251 3.5E-8 T 12-10-2018 Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Gene3D G3DSA:3.30.450.20 252 375 6.1E-18 T 12-10-2018 Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Pfam PF00990 Diguanylate cyclase, GGDEF domain 383 538 4.7E-47 T 12-10-2018 IPR000160 GGDEF domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Pfam PF13188 PAS domain 136 175 0.05 T 12-10-2018 IPR000014 PAS domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 Pfam PF13188 PAS domain 8 61 4.2E-5 T 12-10-2018 IPR000014 PAS domain Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 SUPERFAMILY SSF55785 20 130 2.47E-8 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3317 d45b7de7d7f10c6da4bd11b89c862b7e 826 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 379 540 7.1E-43 T 12-10-2018 IPR000160 GGDEF domain Alide_0841 1594bc7bd18b51239156c8a3af46fe60 203 Pfam PF05137 Fimbrial assembly protein (PilN) 100 182 1.5E-21 T 12-10-2018 IPR007813 Fimbrial assembly PilN Alide_1489 117a6404c9c326544c0d67df540f15fa 442 Pfam PF13343 Bacterial extracellular solute-binding protein 77 284 4.7E-22 T 12-10-2018 Alide_1489 117a6404c9c326544c0d67df540f15fa 442 Gene3D G3DSA:3.40.190.10 133 249 1.5E-49 T 12-10-2018 Alide_1489 117a6404c9c326544c0d67df540f15fa 442 Gene3D G3DSA:3.40.190.10 31 286 1.5E-49 T 12-10-2018 Alide_1489 117a6404c9c326544c0d67df540f15fa 442 SUPERFAMILY SSF53850 22 316 8.51E-52 T 12-10-2018 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 SUPERFAMILY SSF47203 229 379 5.8E-50 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 1.4E-47 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 PIRSF PIRSF016578 19 82 8.2E-7 T 12-10-2018 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 PIRSF PIRSF016578 129 383 1.7E-13 T 12-10-2018 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 SUPERFAMILY SSF56645 11 241 3.53E-77 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 Gene3D G3DSA:1.10.540.10 6 118 1.1E-26 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 Gene3D G3DSA:1.20.140.10 235 379 1.3E-49 T 12-10-2018 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 217 1.1E-28 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 Gene3D G3DSA:2.40.110.10 120 234 7.2E-43 T 12-10-2018 Alide_4342 6fd4dfca545a6fbe09949367771ef281 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 117 3.5E-26 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0024 f18f923bbd2d6dcc386a65279bfc6835 395 SUPERFAMILY SSF47203 232 393 2.9E-18 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0024 f18f923bbd2d6dcc386a65279bfc6835 395 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 391 1.4E-24 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0024 f18f923bbd2d6dcc386a65279bfc6835 395 Gene3D G3DSA:1.20.140.10 236 395 1.8E-31 T 12-10-2018 Alide_0024 f18f923bbd2d6dcc386a65279bfc6835 395 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 120 5.3E-19 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0024 f18f923bbd2d6dcc386a65279bfc6835 395 Gene3D G3DSA:1.10.540.10 3 120 1.3E-25 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0024 f18f923bbd2d6dcc386a65279bfc6835 395 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 220 3.6E-23 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0024 f18f923bbd2d6dcc386a65279bfc6835 395 SUPERFAMILY SSF56645 5 240 1.23E-71 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0024 f18f923bbd2d6dcc386a65279bfc6835 395 Gene3D G3DSA:2.40.110.10 125 235 1.7E-38 T 12-10-2018 Alide_0618 c2e656b37f74cda1da26bc9c07b7bf19 561 Gene3D G3DSA:3.40.50.12780 14 464 1.6E-106 T 12-10-2018 Alide_0618 c2e656b37f74cda1da26bc9c07b7bf19 561 SUPERFAMILY SSF56801 20 559 1.44E-142 T 12-10-2018 Alide_0618 c2e656b37f74cda1da26bc9c07b7bf19 561 Gene3D G3DSA:3.30.300.310 465 561 1.0E-29 T 12-10-2018 Alide_0618 c2e656b37f74cda1da26bc9c07b7bf19 561 Pfam PF00501 AMP-binding enzyme 30 468 4.8E-98 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0618 c2e656b37f74cda1da26bc9c07b7bf19 561 ProSitePatterns PS00455 Putative AMP-binding domain signature. 215 226 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_0618 c2e656b37f74cda1da26bc9c07b7bf19 561 Pfam PF13193 AMP-binding enzyme C-terminal domain 477 551 1.3E-19 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1734 ff882706de1286d6c0fef6880c117b00 308 SUPERFAMILY SSF53850 94 302 1.26E-37 T 12-10-2018 Alide_1734 ff882706de1286d6c0fef6880c117b00 308 Gene3D G3DSA:3.40.190.10 100 294 1.2E-50 T 12-10-2018 Alide_1734 ff882706de1286d6c0fef6880c117b00 308 Gene3D G3DSA:1.10.10.10 8 99 1.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1734 ff882706de1286d6c0fef6880c117b00 308 SUPERFAMILY SSF46785 9 117 3.27E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1734 ff882706de1286d6c0fef6880c117b00 308 Gene3D G3DSA:3.40.190.10 171 275 1.2E-50 T 12-10-2018 Alide_1734 ff882706de1286d6c0fef6880c117b00 308 Pfam PF03466 LysR substrate binding domain 93 299 4.8E-38 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1734 ff882706de1286d6c0fef6880c117b00 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 3.0E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1734 ff882706de1286d6c0fef6880c117b00 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 8.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1734 ff882706de1286d6c0fef6880c117b00 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 8.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1734 ff882706de1286d6c0fef6880c117b00 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 8.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2118 3ef02614bbc7c024eeeee65473d0ce0d 362 Gene3D G3DSA:3.10.450.50 247 361 2.5E-11 T 12-10-2018 Alide_2118 3ef02614bbc7c024eeeee65473d0ce0d 362 SUPERFAMILY SSF54427 252 358 2.1E-15 T 12-10-2018 IPR032710 NTF2-like domain superfamily Alide_2118 3ef02614bbc7c024eeeee65473d0ce0d 362 SUPERFAMILY SSF48452 38 159 6.83E-22 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_2118 3ef02614bbc7c024eeeee65473d0ce0d 362 Pfam PF13414 TPR repeat 106 143 2.0E-7 T 12-10-2018 Alide_2118 3ef02614bbc7c024eeeee65473d0ce0d 362 Pfam PF13432 Tetratricopeptide repeat 38 93 4.0E-5 T 12-10-2018 Alide_2118 3ef02614bbc7c024eeeee65473d0ce0d 362 Gene3D G3DSA:1.25.40.10 18 165 2.5E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_2118 3ef02614bbc7c024eeeee65473d0ce0d 362 SMART SM00028 96 129 3.0E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_2118 3ef02614bbc7c024eeeee65473d0ce0d 362 SMART SM00028 130 158 410.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_2118 3ef02614bbc7c024eeeee65473d0ce0d 362 SMART SM00028 62 95 150.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_1463 fcaa75a870cb789a40ee80af8d919085 448 Gene3D G3DSA:3.90.1300.10 4 446 1.4E-106 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_1463 fcaa75a870cb789a40ee80af8d919085 448 ProSitePatterns PS00571 Amidases signature. 150 181 - T 12-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 Alide_1463 fcaa75a870cb789a40ee80af8d919085 448 Pfam PF01425 Amidase 28 435 9.1E-75 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_1463 fcaa75a870cb789a40ee80af8d919085 448 SUPERFAMILY SSF75304 11 445 9.81E-98 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 SUPERFAMILY SSF52518 5 321 1.23E-116 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 Gene3D G3DSA:3.40.50.970 1 326 5.2E-130 T 12-10-2018 Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 5 334 4.0E-156 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 TIGRFAM TIGR00232 tktlase_bact: transketolase 6 672 4.9E-276 T 12-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 Gene3D G3DSA:3.40.50.920 548 678 1.7E-41 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 Gene3D G3DSA:3.40.50.970 327 545 8.0E-83 T 12-10-2018 Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 SUPERFAMILY SSF52922 542 676 5.63E-39 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 Pfam PF02779 Transketolase, pyrimidine binding domain 354 535 2.6E-46 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 SUPERFAMILY SSF52518 344 537 2.82E-64 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 SMART SM00861 355 536 7.4E-67 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_4169 f38ef2c31a4d32abf786715463046cfd 678 Pfam PF02780 Transketolase, C-terminal domain 561 666 9.2E-14 T 12-10-2018 IPR033248 Transketolase, C-terminal domain Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 SUPERFAMILY SSF52518 62 479 2.55E-119 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 Gene3D G3DSA:3.40.50.970 61 484 7.0E-121 T 12-10-2018 Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 Gene3D G3DSA:3.40.50.920 719 875 3.1E-43 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 SUPERFAMILY SSF52922 715 874 9.16E-36 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 Gene3D G3DSA:3.40.50.970 485 718 1.9E-102 T 12-10-2018 Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 PIRSF PIRSF000156 6 875 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 110 311 2.1E-5 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 SUPERFAMILY SSF52518 486 713 4.93E-92 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 11 874 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Alide_2039 ec323801c5b9b1b5ed5545859673811f 875 TIGRFAM TIGR03186 AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase 11 874 0.0 T 12-10-2018 IPR017600 Alpha-ketoglutarate dehydrogenase Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SUPERFAMILY SSF55785 134 256 6.28E-19 T 12-10-2018 IPR035965 PAS domain superfamily Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SUPERFAMILY SSF55073 436 592 1.49E-53 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 PIRSF PIRSF005925 138 858 3.4E-252 T 12-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 PIRSF PIRSF005925 9 150 3.7E-30 T 12-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SMART SM00086 216 258 0.01 T 12-10-2018 IPR001610 PAC motif Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SMART SM00086 95 135 22.0 T 12-10-2018 IPR001610 PAC motif Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SMART SM00267 420 591 8.3E-72 T 12-10-2018 IPR000160 GGDEF domain Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SUPERFAMILY SSF141868 606 852 2.22E-75 T 12-10-2018 IPR035919 EAL domain superfamily Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Gene3D G3DSA:3.30.450.20 136 263 4.1E-26 T 12-10-2018 Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SUPERFAMILY SSF55785 30 144 4.89E-23 T 12-10-2018 IPR035965 PAS domain superfamily Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Gene3D G3DSA:3.30.450.20 16 133 9.8E-24 T 12-10-2018 Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Gene3D G3DSA:3.30.70.270 429 604 4.8E-62 T 12-10-2018 Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Pfam PF00990 Diguanylate cyclase, GGDEF domain 431 585 3.6E-51 T 12-10-2018 IPR000160 GGDEF domain Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Gene3D G3DSA:3.30.450.40 264 428 1.7E-18 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SUPERFAMILY SSF55781 280 431 2.62E-20 T 12-10-2018 Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Gene3D G3DSA:3.20.20.450 605 853 2.1E-87 T 12-10-2018 IPR035919 EAL domain superfamily Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Pfam PF00563 EAL domain 607 840 4.7E-63 T 12-10-2018 IPR001633 EAL domain Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Pfam PF13185 GAF domain 276 419 9.2E-13 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Pfam PF00989 PAS fold 148 255 7.1E-15 T 12-10-2018 IPR013767 PAS fold GO:0006355 Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 Pfam PF00989 PAS fold 21 118 5.4E-12 T 12-10-2018 IPR013767 PAS fold GO:0006355 Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SMART SM00065 260 428 1.3E-4 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 18 141 1.5E-21 T 12-10-2018 IPR000014 PAS domain Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 142 262 3.6E-14 T 12-10-2018 IPR000014 PAS domain Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SMART SM00091 19 85 4.3E-9 T 12-10-2018 IPR000014 PAS domain Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SMART SM00091 143 211 0.0054 T 12-10-2018 IPR000014 PAS domain Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 429 586 1.9E-45 T 12-10-2018 IPR000160 GGDEF domain Alide_4117 688be4f6ea07bd6c5632eeefa4b8e324 858 SMART SM00052 601 845 5.8E-94 T 12-10-2018 IPR001633 EAL domain Alide_4452 26c814e53641588a90d745f6ff1ed6a9 252 PIRSF PIRSF003073 1 244 1.4E-76 T 12-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Alide_4452 26c814e53641588a90d745f6ff1ed6a9 252 SMART SM00382 90 223 1.2E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4452 26c814e53641588a90d745f6ff1ed6a9 252 Pfam PF01695 IstB-like ATP binding protein 46 222 1.4E-50 T 12-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Alide_4452 26c814e53641588a90d745f6ff1ed6a9 252 Gene3D G3DSA:3.40.50.300 56 240 4.4E-45 T 12-10-2018 Alide_4452 26c814e53641588a90d745f6ff1ed6a9 252 SUPERFAMILY SSF52540 63 220 1.67E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2485 9cbf5025e21bcf6955feac5cdfdc77c3 233 SUPERFAMILY SSF52172 5 127 3.7E-42 T 12-10-2018 IPR011006 CheY-like superfamily Alide_2485 9cbf5025e21bcf6955feac5cdfdc77c3 233 SMART SM00448 5 118 1.9E-43 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2485 9cbf5025e21bcf6955feac5cdfdc77c3 233 SMART SM00862 152 225 7.6E-28 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_2485 9cbf5025e21bcf6955feac5cdfdc77c3 233 Pfam PF00072 Response regulator receiver domain 7 119 3.9E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2485 9cbf5025e21bcf6955feac5cdfdc77c3 233 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 6 225 2.0E-99 T 12-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 Alide_2485 9cbf5025e21bcf6955feac5cdfdc77c3 233 SUPERFAMILY SSF46894 130 226 1.56E-28 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_2485 9cbf5025e21bcf6955feac5cdfdc77c3 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 225 1.7E-26 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_2485 9cbf5025e21bcf6955feac5cdfdc77c3 233 Gene3D G3DSA:1.10.10.10 130 228 4.3E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2485 9cbf5025e21bcf6955feac5cdfdc77c3 233 Gene3D G3DSA:3.40.50.2300 2 129 1.7E-37 T 12-10-2018 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 Gene3D G3DSA:3.40.50.620 10 303 2.0E-88 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 PRINTS PR00987 Glutamyl-tRNA synthetase signature 207 217 3.8E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 PRINTS PR00987 Glutamyl-tRNA synthetase signature 41 54 3.8E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 PRINTS PR00987 Glutamyl-tRNA synthetase signature 26 37 3.8E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 PRINTS PR00987 Glutamyl-tRNA synthetase signature 12 24 3.8E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 PRINTS PR00987 Glutamyl-tRNA synthetase signature 223 231 3.8E-15 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 SUPERFAMILY SSF52374 9 301 2.82E-81 T 12-10-2018 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 12 119 9.0E-23 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 194 272 2.3E-17 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 9 303 6.1E-115 T 12-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 Gene3D G3DSA:3.40.50.620 84 255 2.0E-88 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2579 c1ddae7984b4f2604e5f621918a805c2 321 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 9 321 41.334 T 12-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 SUPERFAMILY SSF52922 490 615 4.32E-33 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 11 615 1.2E-267 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 8 618 46.676 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 SMART SM00861 317 481 1.2E-68 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 ProSitePatterns PS00802 Transketolase signature 2. 423 439 - T 12-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 ProSitePatterns PS00801 Transketolase signature 1. 34 53 - T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 9 280 5.0E-124 T 12-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 Pfam PF02779 Transketolase, pyrimidine binding domain 318 476 1.4E-40 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 Pfam PF02780 Transketolase, C-terminal domain 493 608 8.6E-28 T 12-10-2018 IPR033248 Transketolase, C-terminal domain Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 Gene3D G3DSA:3.40.50.920 493 618 2.1E-42 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 SUPERFAMILY SSF52518 6 379 7.33E-84 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 Gene3D G3DSA:3.40.50.970 315 483 3.9E-68 T 12-10-2018 Alide_1116 10cf76756aafe0bcf7af868ae61a68d4 630 SUPERFAMILY SSF52518 315 502 2.44E-58 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_1828 6242d3d5d2a7dcf248f3bea245e68043 116 Pfam PF02411 MerT mercuric transport protein 1 116 3.2E-59 T 12-10-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 Alide_0789 035aa1f440dde9df4b305cf859251b6f 331 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 7 328 1.7E-129 T 12-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 Alide_0789 035aa1f440dde9df4b305cf859251b6f 331 SUPERFAMILY SSF51679 7 327 1.44E-82 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Alide_0789 035aa1f440dde9df4b305cf859251b6f 331 Pfam PF00296 Luciferase-like monooxygenase 23 300 4.6E-36 T 12-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 Alide_0789 035aa1f440dde9df4b305cf859251b6f 331 Gene3D G3DSA:3.20.20.30 4 331 4.3E-94 T 12-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 Alide_2381 94c2b9f951c94319de8295443058d2de 403 Pfam PF02687 FtsX-like permease family 309 396 3.4E-10 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Alide_2381 94c2b9f951c94319de8295443058d2de 403 Pfam PF12704 MacB-like periplasmic core domain 21 242 6.6E-39 T 12-10-2018 IPR025857 MacB-like periplasmic core domain Alide_0179 4b964bfa9883aeb6138c7126b3b2036c 333 Gene3D G3DSA:3.40.190.10 128 254 5.8E-71 T 12-10-2018 Alide_0179 4b964bfa9883aeb6138c7126b3b2036c 333 Gene3D G3DSA:3.40.190.150 31 319 5.8E-71 T 12-10-2018 Alide_0179 4b964bfa9883aeb6138c7126b3b2036c 333 SUPERFAMILY SSF53850 94 288 5.67E-10 T 12-10-2018 Alide_0179 4b964bfa9883aeb6138c7126b3b2036c 333 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 324 2.1E-44 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2550 185be019d9c7c08ae5521e3e536ceec0 289 PIRSF PIRSF003092 20 286 7.9E-78 T 12-10-2018 IPR025501 ATP binding protein MinD Alide_2550 185be019d9c7c08ae5521e3e536ceec0 289 Gene3D G3DSA:3.40.50.300 32 279 2.1E-59 T 12-10-2018 Alide_2550 185be019d9c7c08ae5521e3e536ceec0 289 Pfam PF13614 AAA domain 33 195 6.9E-20 T 12-10-2018 IPR025669 AAA domain Alide_2550 185be019d9c7c08ae5521e3e536ceec0 289 SUPERFAMILY SSF52540 32 282 3.94E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1180 e008dcb2ad821c9697d88ca5d1b4237f 371 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 216 343 5.9E-20 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_1180 e008dcb2ad821c9697d88ca5d1b4237f 371 Gene3D G3DSA:1.20.140.10 218 367 4.9E-28 T 12-10-2018 Alide_1180 e008dcb2ad821c9697d88ca5d1b4237f 371 Gene3D G3DSA:2.40.110.10 119 217 5.0E-13 T 12-10-2018 Alide_1180 e008dcb2ad821c9697d88ca5d1b4237f 371 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 116 1.9E-20 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_1180 e008dcb2ad821c9697d88ca5d1b4237f 371 Gene3D G3DSA:1.10.540.10 1 118 1.0E-29 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_1180 e008dcb2ad821c9697d88ca5d1b4237f 371 SUPERFAMILY SSF47203 215 361 9.83E-32 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_1180 e008dcb2ad821c9697d88ca5d1b4237f 371 SUPERFAMILY SSF56645 1 201 4.45E-37 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2752 71d297423d48efd5983d47b720bb64d2 302 Gene3D G3DSA:3.40.190.10 94 287 1.1E-35 T 12-10-2018 Alide_2752 71d297423d48efd5983d47b720bb64d2 302 SUPERFAMILY SSF46785 1 86 1.19E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2752 71d297423d48efd5983d47b720bb64d2 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 9.4E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2752 71d297423d48efd5983d47b720bb64d2 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2752 71d297423d48efd5983d47b720bb64d2 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2752 71d297423d48efd5983d47b720bb64d2 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2752 71d297423d48efd5983d47b720bb64d2 302 SUPERFAMILY SSF53850 87 295 2.48E-35 T 12-10-2018 Alide_2752 71d297423d48efd5983d47b720bb64d2 302 Pfam PF03466 LysR substrate binding domain 87 293 1.2E-34 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2752 71d297423d48efd5983d47b720bb64d2 302 Gene3D G3DSA:3.40.190.10 163 268 1.1E-35 T 12-10-2018 Alide_2752 71d297423d48efd5983d47b720bb64d2 302 Gene3D G3DSA:1.10.10.10 1 92 1.3E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1205 5725eae4b72d3ee8d910a4566f38a4aa 255 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 255 99.072 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Alide_1205 5725eae4b72d3ee8d910a4566f38a4aa 255 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 236 2.2E-77 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Alide_1205 5725eae4b72d3ee8d910a4566f38a4aa 255 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 24 228 2.4E-51 T 12-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Alide_1205 5725eae4b72d3ee8d910a4566f38a4aa 255 Gene3D G3DSA:1.10.1270.20 177 253 3.5E-26 T 12-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Alide_1205 5725eae4b72d3ee8d910a4566f38a4aa 255 PIRSF PIRSF000386 1 253 1.1E-83 T 12-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Alide_1205 5725eae4b72d3ee8d910a4566f38a4aa 255 SUPERFAMILY SSF75217 1 239 9.81E-87 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases Alide_1205 5725eae4b72d3ee8d910a4566f38a4aa 255 Gene3D G3DSA:3.40.1280.10 1 176 8.8E-59 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Alide_1399 f9b307879bc8e0f4e84b25fc079b7dfc 346 Pfam PF00586 AIR synthase related protein, N-terminal domain 63 165 4.7E-14 T 12-10-2018 IPR016188 PurM-like, N-terminal domain Alide_1399 f9b307879bc8e0f4e84b25fc079b7dfc 346 SUPERFAMILY SSF56042 173 342 3.59E-56 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_1399 f9b307879bc8e0f4e84b25fc079b7dfc 346 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 9 345 45.136 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_1399 f9b307879bc8e0f4e84b25fc079b7dfc 346 Gene3D G3DSA:3.30.1330.10 9 172 6.7E-68 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_1399 f9b307879bc8e0f4e84b25fc079b7dfc 346 Gene3D G3DSA:3.90.650.10 173 345 8.7E-63 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_1399 f9b307879bc8e0f4e84b25fc079b7dfc 346 SUPERFAMILY SSF55326 9 171 1.92E-51 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_1399 f9b307879bc8e0f4e84b25fc079b7dfc 346 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 9 336 2.0E-131 T 12-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_1399 f9b307879bc8e0f4e84b25fc079b7dfc 346 Pfam PF02769 AIR synthase related protein, C-terminal domain 179 338 7.5E-35 T 12-10-2018 IPR010918 PurM-like, C-terminal domain Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 SUPERFAMILY SSF51246 331 441 1.73E-34 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 Gene3D G3DSA:3.30.470.130 1 446 9.2E-185 T 12-10-2018 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 117 322 1.8E-74 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 SMART SM00878 336 440 1.8E-49 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 Pfam PF00364 Biotin-requiring enzyme 596 660 9.7E-16 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 SUPERFAMILY SSF56059 84 347 1.03E-67 T 12-10-2018 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 SMART SM01209 115 293 0.0032 T 12-10-2018 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 SUPERFAMILY SSF52440 2 114 2.16E-45 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 Gene3D G3DSA:2.40.50.100 596 665 3.9E-21 T 12-10-2018 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 111 2.0E-42 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 SUPERFAMILY SSF51230 588 661 3.01E-19 T 12-10-2018 IPR011053 Single hybrid motif Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_0010 f873bfbfb0871c264870cbec6f5bae53 670 Pfam PF02785 Biotin carboxylase C-terminal domain 336 440 5.9E-32 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_1487 60cef8b66ad4d4abcc58d62a882e0969 334 Gene3D G3DSA:3.40.50.720 11 318 3.9E-117 T 12-10-2018 Alide_1487 60cef8b66ad4d4abcc58d62a882e0969 334 Pfam PF16654 Diaminopimelic acid dehydrogenase C-terminal domain 130 283 4.9E-75 T 12-10-2018 IPR032094 Meso-diaminopimelate D-dehydrogenase, C-terminal KEGG: 00300+1.4.1.16|MetaCyc: PWY-2942 Alide_1487 60cef8b66ad4d4abcc58d62a882e0969 334 SUPERFAMILY SSF55347 131 282 3.14E-56 T 12-10-2018 Alide_1487 60cef8b66ad4d4abcc58d62a882e0969 334 TIGRFAM TIGR01921 DAP-DH: diaminopimelate dehydrogenase 10 333 4.2E-132 T 12-10-2018 IPR010190 Diaminopimelate dehydrogenase, Ddh GO:0009089|GO:0047850 KEGG: 00300+1.4.1.16|MetaCyc: PWY-2942 Alide_1487 60cef8b66ad4d4abcc58d62a882e0969 334 SUPERFAMILY SSF51735 11 156 1.03E-21 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1487 60cef8b66ad4d4abcc58d62a882e0969 334 Gene3D G3DSA:3.30.360.10 139 278 3.9E-117 T 12-10-2018 Alide_1487 60cef8b66ad4d4abcc58d62a882e0969 334 PIRSF PIRSF025648 8 334 1.0E-130 T 12-10-2018 IPR010190 Diaminopimelate dehydrogenase, Ddh GO:0009089|GO:0047850 KEGG: 00300+1.4.1.16|MetaCyc: PWY-2942 Alide_1232 ec2a24e692a961a71e6ebe46b123fe8d 359 Pfam PF00589 Phage integrase family 179 345 3.2E-7 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1232 ec2a24e692a961a71e6ebe46b123fe8d 359 Gene3D G3DSA:1.10.443.10 171 351 1.2E-16 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_1232 ec2a24e692a961a71e6ebe46b123fe8d 359 Gene3D G3DSA:1.10.150.130 60 163 2.7E-9 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_1232 ec2a24e692a961a71e6ebe46b123fe8d 359 SUPERFAMILY SSF56349 60 347 1.21E-36 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_3883 662b3a5f594b6ff86b1c471279fdf417 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 1.0E-112 T 12-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 Alide_3883 662b3a5f594b6ff86b1c471279fdf417 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 4.0E-27 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Alide_3883 662b3a5f594b6ff86b1c471279fdf417 260 Pfam PF00460 Flagella basal body rod protein 5 35 7.9E-13 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Alide_3883 662b3a5f594b6ff86b1c471279fdf417 260 SUPERFAMILY SSF117143 92 222 4.84E-38 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Alide_3883 662b3a5f594b6ff86b1c471279fdf417 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 3.4E-48 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Alide_3883 662b3a5f594b6ff86b1c471279fdf417 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 143 243 1.3E-32 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Alide_3863 3215fdddea4123ce44fa0103d3717662 489 Gene3D G3DSA:2.170.280.10 177 396 5.1E-145 T 12-10-2018 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 Gene3D G3DSA:1.20.1330.10 45 448 5.1E-145 T 12-10-2018 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 Pfam PF07196 Flagellin hook IN motif 197 240 2.2E-7 T 12-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 Pfam PF00700 Bacterial flagellin C-terminal helical region 404 488 1.1E-26 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 SUPERFAMILY SSF64518 1 489 3.14E-104 T 12-10-2018 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 Gene3D G3DSA:2.30.220.10 188 286 5.1E-145 T 12-10-2018 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.6E-44 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 PRINTS PR00207 Flagellin signature 111 134 2.2E-24 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 PRINTS PR00207 Flagellin signature 37 54 2.2E-24 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 PRINTS PR00207 Flagellin signature 76 95 2.2E-24 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Alide_3863 3215fdddea4123ce44fa0103d3717662 489 Gene3D G3DSA:1.20.58.1830 5 488 5.1E-145 T 12-10-2018 Alide_3295 89182319623d45af0757aa4a173a1240 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 384 1.8E-16 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3295 89182319623d45af0757aa4a173a1240 388 Gene3D G3DSA:2.40.110.10 128 238 1.2E-33 T 12-10-2018 Alide_3295 89182319623d45af0757aa4a173a1240 388 SUPERFAMILY SSF56645 14 245 2.09E-65 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3295 89182319623d45af0757aa4a173a1240 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 222 3.6E-20 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3295 89182319623d45af0757aa4a173a1240 388 Gene3D G3DSA:1.10.540.10 13 123 6.3E-24 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3295 89182319623d45af0757aa4a173a1240 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 124 6.8E-19 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3295 89182319623d45af0757aa4a173a1240 388 SUPERFAMILY SSF47203 234 387 2.42E-17 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3295 89182319623d45af0757aa4a173a1240 388 Gene3D G3DSA:1.20.140.10 239 388 2.9E-28 T 12-10-2018 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 Pfam PF02805 Metal binding domain of Ada 13 76 4.0E-30 T 12-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 SUPERFAMILY SSF57884 8 87 4.84E-32 T 12-10-2018 IPR035451 Ada-like domain superfamily Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 150 192 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 Gene3D G3DSA:3.40.10.10 8 78 5.1E-31 T 12-10-2018 IPR035451 Ada-like domain superfamily Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 SUPERFAMILY SSF46689 149 198 1.52E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 Gene3D G3DSA:3.30.310.20 209 323 2.0E-30 T 12-10-2018 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 SMART SM01009 208 323 2.4E-49 T 12-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 SUPERFAMILY SSF48150 314 489 4.54E-41 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 SUPERFAMILY SSF55945 209 307 5.02E-22 T 12-10-2018 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 SMART SM00342 113 196 7.6E-27 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 Gene3D G3DSA:1.10.10.60 113 202 5.0E-24 T 12-10-2018 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 SMART SM00478 333 495 2.5E-9 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 Pfam PF12833 Helix-turn-helix domain 119 198 3.1E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 Pfam PF06029 AlkA N-terminal domain 209 323 1.4E-32 T 12-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 Gene3D G3DSA:1.10.340.30 324 442 2.9E-33 T 12-10-2018 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 329 479 1.8E-9 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Alide_2598 ffee660f694dda2aa30bfd7c5d44a8b3 499 Gene3D G3DSA:1.10.1670.10 444 495 2.2E-8 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 Pfam PF04963 Sigma-54 factor, core binding domain 139 344 2.0E-52 T 12-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 PIRSF PIRSF000774 1 517 1.9E-150 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 515 1.9E-129 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 PRINTS PR00045 Sigma-54 factor signature 491 509 2.3E-29 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 PRINTS PR00045 Sigma-54 factor signature 433 444 2.3E-29 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 PRINTS PR00045 Sigma-54 factor signature 219 236 2.3E-29 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 PRINTS PR00045 Sigma-54 factor signature 417 429 2.3E-29 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 Gene3D G3DSA:1.10.10.1330 144 267 8.8E-18 T 12-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 Gene3D G3DSA:1.10.10.60 458 515 1.8E-22 T 12-10-2018 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 Pfam PF04552 Sigma-54, DNA binding domain 359 515 3.5E-64 T 12-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 405 424 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 48 6.5E-18 T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Alide_4081 ff02c7e6bf9fe12e5988096df3078602 517 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 496 503 - T 12-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 Pfam PF14492 Elongation Factor G, domain II 389 462 3.2E-19 T 12-10-2018 Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 Gene3D G3DSA:3.30.70.870 397 468 3.2E-18 T 12-10-2018 Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 Gene3D G3DSA:3.30.230.10 469 672 2.2E-78 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 SUPERFAMILY SSF54211 464 584 1.29E-40 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 Gene3D G3DSA:3.40.50.300 7 267 6.3E-51 T 12-10-2018 Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 SUPERFAMILY SSF52540 9 263 8.56E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 SUPERFAMILY SSF50447 247 378 4.89E-24 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 SMART SM00889 465 583 6.2E-58 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 Pfam PF03764 Elongation factor G, domain IV 464 582 1.9E-40 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 Pfam PF00679 Elongation factor G C-terminus 586 672 4.7E-23 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 SUPERFAMILY SSF54980 387 464 2.73E-17 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 SUPERFAMILY SSF54980 588 679 4.65E-22 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 Gene3D G3DSA:2.40.30.10 273 396 1.2E-24 T 12-10-2018 Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 Pfam PF00009 Elongation factor Tu GTP binding domain 12 262 1.3E-28 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 Gene3D G3DSA:3.30.70.240 589 660 2.2E-78 T 12-10-2018 Alide_0786 6a92eabf0b5cc9775485a0587193f443 684 SMART SM00838 585 673 2.5E-22 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 61 150 3.4E-26 T 12-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 Gene3D G3DSA:3.30.1360.10 14 223 3.6E-83 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 258 328 1.0E-34 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 SMART SM00662 20 230 9.8E-100 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 26 224 1.3E-21 T 12-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 Gene3D G3DSA:1.10.150.20 248 330 4.1E-37 T 12-10-2018 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 SUPERFAMILY SSF47789 253 325 4.19E-27 T 12-10-2018 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 Gene3D G3DSA:2.170.120.12 50 173 3.6E-83 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 254 310 1.0E-24 T 12-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 2 319 35.712 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 21 318 1.0E-108 T 12-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 SUPERFAMILY SSF55257 4 229 9.81E-30 T 12-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_3958 1fa624edbb30c1e5a41777ad9844d8a1 331 SUPERFAMILY SSF56553 50 174 1.31E-43 T 12-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0797 ec57311930fd474158c138a130f2c1a6 229 SUPERFAMILY SSF54523 11 79 3.69E-8 T 12-10-2018 Alide_0797 ec57311930fd474158c138a130f2c1a6 229 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 28 2.2E-6 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0797 ec57311930fd474158c138a130f2c1a6 229 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0797 ec57311930fd474158c138a130f2c1a6 229 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 29 4.3E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0797 ec57311930fd474158c138a130f2c1a6 229 SUPERFAMILY SSF54523 44 214 7.85E-5 T 12-10-2018 Alide_3001 91c0939c8496339eea7ee04cbfaeeb81 165 Gene3D G3DSA:3.40.430.10 2 164 1.6E-57 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Alide_3001 91c0939c8496339eea7ee04cbfaeeb81 165 PIRSF PIRSF000194 1 165 5.0E-63 T 12-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 Alide_3001 91c0939c8496339eea7ee04cbfaeeb81 165 PRINTS PR00070 Dihydrofolate reductase signature 42 53 1.7E-17 T 12-10-2018 Alide_3001 91c0939c8496339eea7ee04cbfaeeb81 165 PRINTS PR00070 Dihydrofolate reductase signature 97 111 1.7E-17 T 12-10-2018 Alide_3001 91c0939c8496339eea7ee04cbfaeeb81 165 PRINTS PR00070 Dihydrofolate reductase signature 29 37 1.7E-17 T 12-10-2018 Alide_3001 91c0939c8496339eea7ee04cbfaeeb81 165 PRINTS PR00070 Dihydrofolate reductase signature 15 25 1.7E-17 T 12-10-2018 Alide_3001 91c0939c8496339eea7ee04cbfaeeb81 165 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 15 37 - T 12-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 Alide_3001 91c0939c8496339eea7ee04cbfaeeb81 165 Pfam PF00186 Dihydrofolate reductase 4 162 1.1E-55 T 12-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 Alide_3001 91c0939c8496339eea7ee04cbfaeeb81 165 SUPERFAMILY SSF53597 3 163 2.38E-56 T 12-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Alide_0838 fed438d313255e01240a647bb8ef996f 109 SMART SM01219 1 108 2.7E-44 T 12-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_0838 fed438d313255e01240a647bb8ef996f 109 SUPERFAMILY SSF55387 1 104 1.59E-29 T 12-10-2018 Alide_0838 fed438d313255e01240a647bb8ef996f 109 Gene3D G3DSA:3.30.920.10 1 109 6.0E-34 T 12-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_0838 fed438d313255e01240a647bb8ef996f 109 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 3 107 1.7E-34 T 12-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_0838 fed438d313255e01240a647bb8ef996f 109 Pfam PF01491 Frataxin-like domain 1 104 5.8E-23 T 12-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_0838 fed438d313255e01240a647bb8ef996f 109 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 107 25.411 T 12-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_0838 fed438d313255e01240a647bb8ef996f 109 ProSitePatterns PS01344 Frataxin family signature. 52 66 - T 12-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_1109 8f41ea93650529da5e491ec915521757 799 SUPERFAMILY SSF56281 531 773 9.52E-43 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_1109 8f41ea93650529da5e491ec915521757 799 Pfam PF03772 Competence protein 240 507 2.6E-60 T 12-10-2018 IPR004477 ComEC/Rec2-related protein Alide_1109 8f41ea93650529da5e491ec915521757 799 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 261 445 5.6E-26 T 12-10-2018 IPR004477 ComEC/Rec2-related protein Alide_1109 8f41ea93650529da5e491ec915521757 799 Pfam PF00753 Metallo-beta-lactamase superfamily 540 736 4.3E-9 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_1109 8f41ea93650529da5e491ec915521757 799 Gene3D G3DSA:3.60.15.10 535 781 2.4E-52 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_1109 8f41ea93650529da5e491ec915521757 799 Pfam PF13567 Domain of unknown function (DUF4131) 16 186 4.0E-29 T 12-10-2018 IPR025405 Domain of unknown function DUF4131 Alide_1109 8f41ea93650529da5e491ec915521757 799 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 140 770 1.3E-105 T 12-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 Alide_1109 8f41ea93650529da5e491ec915521757 799 SMART SM00849 543 742 7.0E-12 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_4357 521184db6ed2a703e805eafb22b7edb2 73 Pfam PF03994 Domain of Unknown Function (DUF350) 18 72 5.9E-18 T 12-10-2018 IPR007140 Protein of unknown function DUF350 Alide_0325 85e4f9d75cd1ca090d739d3292804273 89 Gene3D G3DSA:3.90.56.10 1 89 3.2E-35 T 12-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 Alide_0325 85e4f9d75cd1ca090d739d3292804273 89 ProDom PD004249 MONOOXYGENASE COMPONENT HYDROXYLASE MMOB/DMPM PHENOL SUBUNIT 3D-STRUCTURE HYDROCARBONS IRON PHENOLHYDROXYLASE 8 83 6.0E-25 T 12-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 Alide_0325 85e4f9d75cd1ca090d739d3292804273 89 Pfam PF02406 MmoB/DmpM family 3 85 1.2E-31 T 12-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 Alide_0325 85e4f9d75cd1ca090d739d3292804273 89 SUPERFAMILY SSF56029 3 88 1.27E-31 T 12-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 Alide_0087 80eca9c9425181336c4e1db9c0b6e446 236 Gene3D G3DSA:3.40.50.150 32 205 2.9E-23 T 12-10-2018 Alide_0087 80eca9c9425181336c4e1db9c0b6e446 236 Pfam PF05050 Methyltransferase FkbM domain 45 207 2.3E-10 T 12-10-2018 IPR006342 Methyltransferase FkbM Alide_0087 80eca9c9425181336c4e1db9c0b6e446 236 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 43 182 6.9E-22 T 12-10-2018 IPR006342 Methyltransferase FkbM Alide_0087 80eca9c9425181336c4e1db9c0b6e446 236 SUPERFAMILY SSF53335 17 208 2.33E-29 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_3759 20e57ac90c3ce0c3a988e559d8860337 376 SUPERFAMILY SSF47203 226 370 1.77E-34 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3759 20e57ac90c3ce0c3a988e559d8860337 376 SUPERFAMILY SSF56645 1 225 9.95E-40 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3759 20e57ac90c3ce0c3a988e559d8860337 376 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 208 2.3E-12 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3759 20e57ac90c3ce0c3a988e559d8860337 376 Gene3D G3DSA:1.20.140.10 230 374 2.2E-31 T 12-10-2018 Alide_3759 20e57ac90c3ce0c3a988e559d8860337 376 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 352 6.4E-24 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3759 20e57ac90c3ce0c3a988e559d8860337 376 Gene3D G3DSA:2.40.110.10 119 229 1.1E-20 T 12-10-2018 Alide_3759 20e57ac90c3ce0c3a988e559d8860337 376 Gene3D G3DSA:1.10.540.10 1 117 5.7E-19 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3759 20e57ac90c3ce0c3a988e559d8860337 376 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 108 1.1E-8 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_1113 ecfb44149b5a63459c1bdd000a902ce6 379 Gene3D G3DSA:2.102.10.10 35 159 6.3E-40 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Alide_1113 ecfb44149b5a63459c1bdd000a902ce6 379 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 173 372 9.1E-31 T 12-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 Alide_1113 ecfb44149b5a63459c1bdd000a902ce6 379 SUPERFAMILY SSF50022 7 149 2.75E-32 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Alide_1113 ecfb44149b5a63459c1bdd000a902ce6 379 SUPERFAMILY SSF55961 154 373 3.45E-45 T 12-10-2018 Alide_1113 ecfb44149b5a63459c1bdd000a902ce6 379 Pfam PF00355 Rieske [2Fe-2S] domain 46 127 6.3E-10 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Alide_1113 ecfb44149b5a63459c1bdd000a902ce6 379 Gene3D G3DSA:3.90.380.10 14 368 6.3E-40 T 12-10-2018 Alide_2189 848ecd4079013d0b4134001b9ef585a3 132 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 42 129 1.7E-29 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Alide_2189 848ecd4079013d0b4134001b9ef585a3 132 SUPERFAMILY SSF54534 21 131 9.62E-46 T 12-10-2018 Alide_2189 848ecd4079013d0b4134001b9ef585a3 132 Gene3D G3DSA:3.10.50.40 12 132 9.7E-48 T 12-10-2018 Alide_1765 664f4e0d11df7387d75b3b6058b766c6 222 Gene3D G3DSA:3.40.30.10 1 91 2.8E-22 T 12-10-2018 Alide_1765 664f4e0d11df7387d75b3b6058b766c6 222 Gene3D G3DSA:1.20.1050.10 92 219 2.3E-54 T 12-10-2018 Alide_1765 664f4e0d11df7387d75b3b6058b766c6 222 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 84 2.6E-12 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_1765 664f4e0d11df7387d75b3b6058b766c6 222 SUPERFAMILY SSF52833 1 89 6.87E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_1765 664f4e0d11df7387d75b3b6058b766c6 222 SUPERFAMILY SSF47616 86 217 1.19E-32 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_1765 664f4e0d11df7387d75b3b6058b766c6 222 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 3 216 2.3E-88 T 12-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 Alide_0426 b74179693bda9fb8a009870fb41ae202 136 Gene3D G3DSA:3.40.50.510 3 136 1.7E-30 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 Alide_0426 b74179693bda9fb8a009870fb41ae202 136 SUPERFAMILY SSF53062 2 126 6.67E-29 T 12-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 Alide_0426 b74179693bda9fb8a009870fb41ae202 136 Pfam PF03610 PTS system fructose IIA component 5 106 7.4E-15 T 12-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Alide_0136 e289ad55105f2289cf395e4b919dabf1 336 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 332 5.3E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0136 e289ad55105f2289cf395e4b919dabf1 336 PIRSF PIRSF017082 4 335 2.7E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0136 e289ad55105f2289cf395e4b919dabf1 336 Gene3D G3DSA:3.40.190.150 38 326 9.2E-99 T 12-10-2018 Alide_0136 e289ad55105f2289cf395e4b919dabf1 336 SUPERFAMILY SSF53850 131 289 3.57E-8 T 12-10-2018 Alide_0136 e289ad55105f2289cf395e4b919dabf1 336 Gene3D G3DSA:3.40.190.10 135 260 9.2E-99 T 12-10-2018 Alide_0582 50793f3cd228e63380981d34aadd364b 630 PRINTS PR00301 70kDa heat shock protein signature 173 193 3.8E-6 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_0582 50793f3cd228e63380981d34aadd364b 630 PRINTS PR00301 70kDa heat shock protein signature 240 250 3.8E-6 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_0582 50793f3cd228e63380981d34aadd364b 630 PRINTS PR00301 70kDa heat shock protein signature 19 32 3.8E-6 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_0582 50793f3cd228e63380981d34aadd364b 630 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 23 30 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_0582 50793f3cd228e63380981d34aadd364b 630 SUPERFAMILY SSF53067 18 215 1.94E-28 T 12-10-2018 Alide_0582 50793f3cd228e63380981d34aadd364b 630 Gene3D G3DSA:3.90.640.10 270 350 2.5E-36 T 12-10-2018 Alide_0582 50793f3cd228e63380981d34aadd364b 630 Gene3D G3DSA:3.30.420.40 224 269 2.5E-36 T 12-10-2018 Alide_0582 50793f3cd228e63380981d34aadd364b 630 SUPERFAMILY SSF53067 229 476 4.66E-27 T 12-10-2018 Alide_0582 50793f3cd228e63380981d34aadd364b 630 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 234 247 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_0582 50793f3cd228e63380981d34aadd364b 630 Pfam PF00012 Hsp70 protein 143 357 5.3E-15 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_0582 50793f3cd228e63380981d34aadd364b 630 Gene3D G3DSA:3.30.420.40 21 223 2.5E-36 T 12-10-2018 Alide_1942 efec71867454c6508f3f59101a603b62 334 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 16 228 5.5E-71 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_1942 efec71867454c6508f3f59101a603b62 334 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 37 191 7.5E-53 T 12-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 Alide_1942 efec71867454c6508f3f59101a603b62 334 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 15 308 17.99 T 12-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_1942 efec71867454c6508f3f59101a603b62 334 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 254 308 1.5E-6 T 12-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_1942 efec71867454c6508f3f59101a603b62 334 SUPERFAMILY SSF55120 14 247 3.17E-74 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_1942 efec71867454c6508f3f59101a603b62 334 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 192 249 1.2E-12 T 12-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 Alide_1942 efec71867454c6508f3f59101a603b62 334 Gene3D G3DSA:3.30.2350.10 6 255 2.3E-84 T 12-10-2018 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 SMART SM00493 1 130 5.6E-25 T 12-10-2018 IPR006171 TOPRIM domain Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 Gene3D G3DSA:1.10.290.10 289 418 1.4E-158 T 12-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 Gene3D G3DSA:3.40.50.140 1 158 6.4E-53 T 12-10-2018 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 Pfam PF01131 DNA topoisomerase 158 600 5.7E-111 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 SUPERFAMILY SSF56712 1 614 2.62E-172 T 12-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 SMART SM00437 280 566 1.9E-71 T 12-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 666 4.0E-204 T 12-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 635 671 7.7E-7 T 12-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 SMART SM00436 130 225 1.3E-22 T 12-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 Pfam PF01751 Toprim domain 3 137 1.9E-17 T 12-10-2018 IPR006171 TOPRIM domain Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 Gene3D G3DSA:1.10.460.10 164 610 1.4E-158 T 12-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 332 - T 12-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 Gene3D G3DSA:2.70.20.10 219 496 1.4E-158 T 12-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 323 332 8.1E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 195 213 8.1E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 529 543 8.1E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 104 117 8.1E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4426 5f21cc4f4edf1b0611ddd342980f5c8a 687 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 404 420 8.1E-24 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 Gene3D G3DSA:3.40.190.10 106 291 4.7E-57 T 12-10-2018 Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 Pfam PF03466 LysR substrate binding domain 95 295 3.7E-38 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 SUPERFAMILY SSF46785 7 85 1.02E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 3.6E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 3.6E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 3.6E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 Gene3D G3DSA:3.40.190.10 166 264 4.7E-57 T 12-10-2018 Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 9.8E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 SUPERFAMILY SSF53850 96 297 5.43E-41 T 12-10-2018 Alide_2690 33ee18fc18acea3e8295a2422bc4fcc7 300 Gene3D G3DSA:1.10.10.10 9 96 6.9E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1975 590853c35ce5320a6a29bfa89415ffa4 304 Gene3D G3DSA:3.40.50.300 27 214 1.6E-29 T 12-10-2018 Alide_1975 590853c35ce5320a6a29bfa89415ffa4 304 Pfam PF07728 AAA domain (dynein-related subfamily) 44 195 3.2E-13 T 12-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Alide_1975 590853c35ce5320a6a29bfa89415ffa4 304 SUPERFAMILY SSF52540 29 277 2.24E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1975 590853c35ce5320a6a29bfa89415ffa4 304 SMART SM00382 41 202 2.8E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 Gene3D G3DSA:1.10.10.10 1 85 1.1E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 Gene3D G3DSA:3.40.190.10 92 307 1.4E-73 T 12-10-2018 Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 Pfam PF03466 LysR substrate binding domain 88 309 1.9E-41 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 Gene3D G3DSA:3.40.190.10 161 284 1.4E-73 T 12-10-2018 Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 SUPERFAMILY SSF46785 1 84 1.55E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 SUPERFAMILY SSF53850 88 311 1.03E-35 T 12-10-2018 Alide_3981 0ae08d30f33b8fda5edebd2ac40b5085 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 9.5E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3213 5a587a3237f7fb54c63615cf9c811615 415 Gene3D G3DSA:3.40.50.10540 6 398 1.9E-61 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3213 5a587a3237f7fb54c63615cf9c811615 415 SUPERFAMILY SSF89796 4 405 5.23E-69 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3213 5a587a3237f7fb54c63615cf9c811615 415 Gene3D G3DSA:3.30.1540.10 233 330 1.9E-61 T 12-10-2018 Alide_3213 5a587a3237f7fb54c63615cf9c811615 415 Pfam PF02515 CoA-transferase family III 6 381 1.0E-53 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2975 4b93fb1d7a110018ec7f741af27dfd7a 391 SUPERFAMILY SSF53822 30 385 1.59E-62 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2975 4b93fb1d7a110018ec7f741af27dfd7a 391 Pfam PF13458 Periplasmic binding protein 31 379 1.5E-55 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_2975 4b93fb1d7a110018ec7f741af27dfd7a 391 Gene3D G3DSA:3.40.50.2300 33 356 1.6E-57 T 12-10-2018 Alide_2975 4b93fb1d7a110018ec7f741af27dfd7a 391 Gene3D G3DSA:3.40.50.2300 154 284 1.6E-57 T 12-10-2018 Alide_1505 083bdb673552067faa6c023e36447b5d 660 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 619 636 5.0E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_1505 083bdb673552067faa6c023e36447b5d 660 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 636 656 5.0E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_1505 083bdb673552067faa6c023e36447b5d 660 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 374 387 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_1505 083bdb673552067faa6c023e36447b5d 660 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 561 570 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Alide_1505 083bdb673552067faa6c023e36447b5d 660 Pfam PF01590 GAF domain 104 213 3.7E-7 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_1505 083bdb673552067faa6c023e36447b5d 660 Gene3D G3DSA:1.10.10.60 608 655 8.7E-10 T 12-10-2018 Alide_1505 083bdb673552067faa6c023e36447b5d 660 Pfam PF02954 Bacterial regulatory protein, Fis family 614 653 3.2E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_1505 083bdb673552067faa6c023e36447b5d 660 SMART SM00382 370 511 8.4E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1505 083bdb673552067faa6c023e36447b5d 660 SUPERFAMILY SSF46689 561 655 1.03E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1505 083bdb673552067faa6c023e36447b5d 660 Pfam PF00158 Sigma-54 interaction domain 351 514 1.2E-58 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_1505 083bdb673552067faa6c023e36447b5d 660 Gene3D G3DSA:3.40.50.300 340 518 5.9E-57 T 12-10-2018 Alide_1505 083bdb673552067faa6c023e36447b5d 660 Gene3D G3DSA:1.10.8.60 519 597 3.7E-25 T 12-10-2018 Alide_1505 083bdb673552067faa6c023e36447b5d 660 Gene3D G3DSA:3.30.450.40 30 216 6.3E-53 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_1505 083bdb673552067faa6c023e36447b5d 660 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 434 449 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Alide_1505 083bdb673552067faa6c023e36447b5d 660 SUPERFAMILY SSF52540 350 590 4.99E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0350 8ed9fafd69e712e45f34106a3a024a87 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 325 5.8E-93 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0350 8ed9fafd69e712e45f34106a3a024a87 329 Gene3D G3DSA:3.40.190.10 131 254 4.2E-119 T 12-10-2018 Alide_0350 8ed9fafd69e712e45f34106a3a024a87 329 PIRSF PIRSF017082 1 329 2.8E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0350 8ed9fafd69e712e45f34106a3a024a87 329 Gene3D G3DSA:3.40.190.150 34 319 4.2E-119 T 12-10-2018 Alide_0350 8ed9fafd69e712e45f34106a3a024a87 329 SUPERFAMILY SSF53850 116 292 7.6E-12 T 12-10-2018 Alide_2467 2c92aeb7c1ceb2ed6da39f730088e23f 264 Pfam PF13649 Methyltransferase domain 62 143 5.9E-11 T 12-10-2018 Alide_2467 2c92aeb7c1ceb2ed6da39f730088e23f 264 Gene3D G3DSA:3.40.50.150 8 171 2.6E-17 T 12-10-2018 Alide_2467 2c92aeb7c1ceb2ed6da39f730088e23f 264 SUPERFAMILY SSF53335 24 176 8.89E-19 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_4573 2ce0f8dfef7658de28e6fa847f26aec5 70 SUPERFAMILY SSF47413 1 53 1.05E-6 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_4573 2ce0f8dfef7658de28e6fa847f26aec5 70 Gene3D G3DSA:1.10.260.40 1 68 7.2E-8 T 12-10-2018 Alide_2846 65e4fff279d0099e5859d82e42a0c8e1 202 Pfam PF08359 YsiA-like protein, C-terminal region 74 190 1.0E-5 T 12-10-2018 IPR013570 Transcription regulator YsiA, C-terminal Alide_2846 65e4fff279d0099e5859d82e42a0c8e1 202 SUPERFAMILY SSF46689 4 86 3.69E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2846 65e4fff279d0099e5859d82e42a0c8e1 202 Gene3D G3DSA:1.10.357.10 11 198 6.7E-43 T 12-10-2018 Alide_2846 65e4fff279d0099e5859d82e42a0c8e1 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 62 9.3E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2846 65e4fff279d0099e5859d82e42a0c8e1 202 SUPERFAMILY SSF48498 84 198 3.39E-23 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_3134 ce5bf9e6492d683525d0df1a3a79e339 194 SUPERFAMILY SSF52507 5 189 1.57E-63 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Alide_3134 ce5bf9e6492d683525d0df1a3a79e339 194 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 189 37.496 T 12-10-2018 IPR004507 Flavin prenyltransferase UbiX-like Alide_3134 ce5bf9e6492d683525d0df1a3a79e339 194 Pfam PF02441 Flavoprotein 5 168 4.0E-27 T 12-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Alide_3134 ce5bf9e6492d683525d0df1a3a79e339 194 Gene3D G3DSA:3.40.50.1950 5 194 2.8E-79 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Alide_3134 ce5bf9e6492d683525d0df1a3a79e339 194 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 6 187 8.4E-73 T 12-10-2018 IPR004507 Flavin prenyltransferase UbiX-like Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 SUPERFAMILY SSF53738 156 255 5.1E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 Gene3D G3DSA:3.40.120.10 257 339 1.8E-61 T 12-10-2018 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 4.6E-42 T 12-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 SUPERFAMILY SSF53738 2 181 4.71E-48 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 SUPERFAMILY SSF55957 358 442 4.84E-22 T 12-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 Gene3D G3DSA:3.30.310.50 370 444 9.2E-24 T 12-10-2018 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 366 3.2E-32 T 12-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 441 7.4E-178 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 440 6.5E-15 T 12-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 Gene3D G3DSA:3.40.120.10 174 362 1.8E-61 T 12-10-2018 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 6.1E-20 T 12-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 SUPERFAMILY SSF53738 258 365 7.46E-30 T 12-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 12-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 3.2E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 3.2E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 3.2E-13 T 12-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 Gene3D G3DSA:3.40.120.10 2 154 5.8E-50 T 12-10-2018 Alide_2496 1c1e39e9e9d664d16b57c6162ad3fe2f 444 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 444 45.603 T 12-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Alide_0909 d411034593aedf765459723a3c4e49d4 919 SUPERFAMILY SSF81767 227 372 2.88E-43 T 12-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 Alide_0909 d411034593aedf765459723a3c4e49d4 919 SUPERFAMILY SSF52540 421 629 6.47E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0909 d411034593aedf765459723a3c4e49d4 919 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 843 19.931 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Alide_0909 d411034593aedf765459723a3c4e49d4 919 SMART SM00958 228 362 4.7E-81 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Alide_0909 d411034593aedf765459723a3c4e49d4 919 SUPERFAMILY SSF81886 633 907 6.93E-80 T 12-10-2018 IPR036266 SecA, Wing/Scaffold superfamily Alide_0909 d411034593aedf765459723a3c4e49d4 919 SUPERFAMILY SSF52540 4 419 4.75E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0909 d411034593aedf765459723a3c4e49d4 919 Pfam PF07517 SecA DEAD-like domain 7 406 3.0E-133 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Alide_0909 d411034593aedf765459723a3c4e49d4 919 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 829 0.0 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Alide_0909 d411034593aedf765459723a3c4e49d4 919 Gene3D G3DSA:3.90.1440.10 229 372 1.3E-178 T 12-10-2018 Alide_0909 d411034593aedf765459723a3c4e49d4 919 PRINTS PR00906 SecA protein signature 63 87 6.6E-70 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Alide_0909 d411034593aedf765459723a3c4e49d4 919 PRINTS PR00906 SecA protein signature 170 190 6.6E-70 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Alide_0909 d411034593aedf765459723a3c4e49d4 919 PRINTS PR00906 SecA protein signature 380 397 6.6E-70 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Alide_0909 d411034593aedf765459723a3c4e49d4 919 PRINTS PR00906 SecA protein signature 117 127 6.6E-70 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Alide_0909 d411034593aedf765459723a3c4e49d4 919 PRINTS PR00906 SecA protein signature 101 115 6.6E-70 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Alide_0909 d411034593aedf765459723a3c4e49d4 919 PRINTS PR00906 SecA protein signature 343 365 6.6E-70 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Alide_0909 d411034593aedf765459723a3c4e49d4 919 PRINTS PR00906 SecA protein signature 417 430 6.6E-70 T 12-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Alide_0909 d411034593aedf765459723a3c4e49d4 919 Pfam PF07516 SecA Wing and Scaffold domain 628 841 1.3E-64 T 12-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Alide_0909 d411034593aedf765459723a3c4e49d4 919 SMART SM00957 6 406 0.0 T 12-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Alide_0909 d411034593aedf765459723a3c4e49d4 919 ProSitePatterns PS01312 SecA family signature. 504 519 - T 12-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 Alide_0909 d411034593aedf765459723a3c4e49d4 919 Gene3D G3DSA:1.10.3060.10 632 844 2.1E-72 T 12-10-2018 Alide_0909 d411034593aedf765459723a3c4e49d4 919 Pfam PF01043 SecA preprotein cross-linking domain 232 362 1.8E-37 T 12-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Alide_0909 d411034593aedf765459723a3c4e49d4 919 Pfam PF02810 SEC-C motif 899 917 1.8E-10 T 12-10-2018 IPR004027 SEC-C motif Alide_0909 d411034593aedf765459723a3c4e49d4 919 Gene3D G3DSA:3.40.50.300 22 419 1.3E-178 T 12-10-2018 Alide_0909 d411034593aedf765459723a3c4e49d4 919 Gene3D G3DSA:3.40.50.300 421 630 1.1E-85 T 12-10-2018 Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 3.2E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 Gene3D G3DSA:1.10.10.10 1 88 1.3E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 SUPERFAMILY SSF46785 4 88 2.99E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 Pfam PF03466 LysR substrate binding domain 96 308 1.7E-18 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 Gene3D G3DSA:3.40.190.10 173 268 9.6E-11 T 12-10-2018 Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 Gene3D G3DSA:3.40.190.10 98 172 9.6E-11 T 12-10-2018 Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 SUPERFAMILY SSF53850 96 272 3.26E-21 T 12-10-2018 Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 7.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 7.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0693 6929e97685b4c3b50341fc0aa8489269 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 7.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0357 ac3e9db0683a06fc2ab377842dc57c5d 242 Gene3D G3DSA:1.10.10.10 3 76 4.7E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0357 ac3e9db0683a06fc2ab377842dc57c5d 242 SUPERFAMILY SSF55781 80 235 5.89E-21 T 12-10-2018 Alide_0357 ac3e9db0683a06fc2ab377842dc57c5d 242 Pfam PF01614 Bacterial transcriptional regulator 186 229 1.2E-5 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_0357 ac3e9db0683a06fc2ab377842dc57c5d 242 SMART SM00346 16 105 8.7E-14 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0357 ac3e9db0683a06fc2ab377842dc57c5d 242 Gene3D G3DSA:3.30.450.40 84 167 5.6E-10 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0357 ac3e9db0683a06fc2ab377842dc57c5d 242 SUPERFAMILY SSF46785 16 86 6.39E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0357 ac3e9db0683a06fc2ab377842dc57c5d 242 Gene3D G3DSA:3.30.450.40 168 239 1.5E-12 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0357 ac3e9db0683a06fc2ab377842dc57c5d 242 Pfam PF09339 IclR helix-turn-helix domain 18 67 5.5E-11 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 1.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 1.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 1.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 5.1E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 SUPERFAMILY SSF46785 4 118 1.06E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 Gene3D G3DSA:3.40.190.10 236 287 2.8E-6 T 12-10-2018 Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 Gene3D G3DSA:3.40.190.10 288 299 2.8E-6 T 12-10-2018 Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 Pfam PF03466 LysR substrate binding domain 95 314 1.4E-15 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 Gene3D G3DSA:1.10.10.10 8 94 1.3E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3452 4f71e8ae5368eb5a1f0b7fb59a09b446 317 SUPERFAMILY SSF53850 97 314 4.34E-15 T 12-10-2018 Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 SUPERFAMILY SSF52833 33 146 5.16E-38 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 TIGRFAM TIGR01068 thioredoxin: thioredoxin 50 146 2.1E-31 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 ProSitePatterns PS00194 Thioredoxin family active site. 65 83 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 PIRSF PIRSF000077 43 147 3.2E-31 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 Gene3D G3DSA:2.20.28.140 6 42 1.7E-11 T 12-10-2018 Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 Gene3D G3DSA:3.40.30.10 44 147 2.2E-31 T 12-10-2018 Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 PRINTS PR00421 Thioredoxin family signature 112 123 1.9E-9 T 12-10-2018 Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 PRINTS PR00421 Thioredoxin family signature 72 81 1.9E-9 T 12-10-2018 Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 PRINTS PR00421 Thioredoxin family signature 64 72 1.9E-9 T 12-10-2018 Alide_0602 f9531315ae2e809f2f1150edc083b3d3 148 Pfam PF00085 Thioredoxin 47 145 3.3E-29 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 Alide_3387 7ada5833447dc7f461ec10882f0e574e 202 Pfam PF11748 Protein of unknown function (DUF3306) 4 113 6.3E-34 T 12-10-2018 IPR021735 Protein of unknown function DUF3306 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 SUPERFAMILY SSF51120 676 874 3.4E-19 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 SUPERFAMILY SSF51120 882 1012 4.97E-17 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF12760 Transposase zinc-ribbon domain 50 96 2.2E-7 T 12-10-2018 IPR024442 Transposase, zinc-ribbon Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 724 742 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 516 534 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 706 724 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Gene3D G3DSA:2.150.10.10 763 880 2.9E-18 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Gene3D G3DSA:2.150.10.10 317 436 9.3E-12 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Gene3D G3DSA:2.150.10.10 881 1024 3.1E-24 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF06594 Haemolysin-type calcium binding protein related domain 834 876 1.3E-11 T 12-10-2018 IPR010566 Haemolysin-type calcium binding-related Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF06594 Haemolysin-type calcium binding protein related domain 629 669 2.3E-14 T 12-10-2018 IPR010566 Haemolysin-type calcium binding-related Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 PRINTS PR00313 NodO calcium binding signature 472 483 6.0E-10 T 12-10-2018 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 PRINTS PR00313 NodO calcium binding signature 502 510 6.0E-10 T 12-10-2018 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 PRINTS PR00313 NodO calcium binding signature 710 718 6.0E-10 T 12-10-2018 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 PRINTS PR00313 NodO calcium binding signature 772 781 6.0E-10 T 12-10-2018 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Gene3D G3DSA:2.150.10.10 556 655 5.5E-8 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Gene3D G3DSA:2.150.10.10 437 490 1.2E-7 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Gene3D G3DSA:2.150.10.10 668 762 3.9E-14 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 SUPERFAMILY SSF51120 437 647 8.97E-23 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 920 938 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 489 507 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Gene3D G3DSA:2.150.10.10 491 551 8.5E-11 T 12-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 693 708 0.21 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 923 939 0.011 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 436 451 0.23 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 492 509 0.015 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 474 491 0.01 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 906 921 3.0 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 709 726 0.0097 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 771 787 0.23 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 728 744 0.21 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 567 581 2.5 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 520 536 0.019 T 12-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 Alide_1132 80bfd0a7f99080a9ee0f89fe9bb518e9 1025 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 498 516 - T 12-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site Alide_3763 4d257fedfac715d0491cc90323fb2b6f 302 Gene3D G3DSA:3.40.190.290 91 292 4.7E-44 T 12-10-2018 Alide_3763 4d257fedfac715d0491cc90323fb2b6f 302 Pfam PF03466 LysR substrate binding domain 87 291 1.3E-32 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3763 4d257fedfac715d0491cc90323fb2b6f 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 5.8E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3763 4d257fedfac715d0491cc90323fb2b6f 302 SUPERFAMILY SSF46785 1 110 1.4E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3763 4d257fedfac715d0491cc90323fb2b6f 302 SUPERFAMILY SSF53850 88 293 1.16E-33 T 12-10-2018 Alide_3763 4d257fedfac715d0491cc90323fb2b6f 302 Gene3D G3DSA:1.10.10.10 1 88 5.1E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3350 1be8442b05ff09dd6a44b9adf213005a 211 SUPERFAMILY SSF55821 1 207 2.75E-58 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Alide_3350 1be8442b05ff09dd6a44b9adf213005a 211 Gene3D G3DSA:3.90.870.10 1 209 6.2E-57 T 12-10-2018 Alide_3350 1be8442b05ff09dd6a44b9adf213005a 211 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 205 1.4E-53 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 Alide_3350 1be8442b05ff09dd6a44b9adf213005a 211 Pfam PF01300 Telomere recombination 23 202 2.9E-40 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 Alide_3476 d86a11ed4881020adca260198f8b379e 336 PIRSF PIRSF017082 1 336 3.3E-64 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3476 d86a11ed4881020adca260198f8b379e 336 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 333 3.4E-59 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3476 d86a11ed4881020adca260198f8b379e 336 Gene3D G3DSA:3.40.190.150 37 326 1.6E-84 T 12-10-2018 Alide_3476 d86a11ed4881020adca260198f8b379e 336 Gene3D G3DSA:3.40.190.10 134 261 1.6E-84 T 12-10-2018 Alide_0531 b6b5eccb693b3524ff5011f3515775dd 401 SUPERFAMILY SSF53187 2 398 5.14E-84 T 12-10-2018 Alide_0531 b6b5eccb693b3524ff5011f3515775dd 401 Pfam PF07687 Peptidase dimerisation domain 188 284 4.9E-13 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_0531 b6b5eccb693b3524ff5011f3515775dd 401 Pfam PF01546 Peptidase family M20/M25/M40 76 357 1.2E-33 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_0531 b6b5eccb693b3524ff5011f3515775dd 401 Gene3D G3DSA:3.30.70.360 184 298 2.3E-134 T 12-10-2018 Alide_0531 b6b5eccb693b3524ff5011f3515775dd 401 PIRSF PIRSF005962 1 399 4.2E-124 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_0531 b6b5eccb693b3524ff5011f3515775dd 401 SUPERFAMILY SSF55031 186 299 8.24E-34 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_0531 b6b5eccb693b3524ff5011f3515775dd 401 Gene3D G3DSA:3.40.630.10 16 380 2.3E-134 T 12-10-2018 Alide_0531 b6b5eccb693b3524ff5011f3515775dd 401 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 383 3.9E-105 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_1964 1eb4289a9f7a2f0a8400e6cabcced35b 263 Pfam PF13649 Methyltransferase domain 35 126 1.4E-15 T 12-10-2018 Alide_1964 1eb4289a9f7a2f0a8400e6cabcced35b 263 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 2 262 41.678 T 12-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 Alide_1964 1eb4289a9f7a2f0a8400e6cabcced35b 263 Gene3D G3DSA:1.10.150.290 134 242 1.3E-80 T 12-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 Alide_1964 1eb4289a9f7a2f0a8400e6cabcced35b 263 SUPERFAMILY SSF53335 8 217 2.43E-32 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_1964 1eb4289a9f7a2f0a8400e6cabcced35b 263 Gene3D G3DSA:3.40.50.150 9 259 1.3E-80 T 12-10-2018 Alide_0524 e4b9c65265b02ec2ee3f6c1fb691ec53 410 Gene3D G3DSA:3.40.50.10540 12 355 1.4E-123 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0524 e4b9c65265b02ec2ee3f6c1fb691ec53 410 Pfam PF02515 CoA-transferase family III 12 389 3.8E-123 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0524 e4b9c65265b02ec2ee3f6c1fb691ec53 410 SUPERFAMILY SSF89796 7 402 7.85E-120 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0524 e4b9c65265b02ec2ee3f6c1fb691ec53 410 Gene3D G3DSA:3.30.1540.10 244 334 1.4E-123 T 12-10-2018 Alide_3715 41a3427dd8f793173dde20469536bcef 142 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 142 50.286 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Alide_3715 41a3427dd8f793173dde20469536bcef 142 Gene3D G3DSA:2.40.330.20 1 139 2.2E-37 T 12-10-2018 IPR038619 MraZ superfamily Alide_3715 41a3427dd8f793173dde20469536bcef 142 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 2 118 2.0E-53 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Alide_3715 41a3427dd8f793173dde20469536bcef 142 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 141 1.6E-33 T 12-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Alide_3715 41a3427dd8f793173dde20469536bcef 142 Pfam PF02381 MraZ protein, putative antitoxin-like 2 68 5.5E-12 T 12-10-2018 IPR020603 MraZ domain Alide_3715 41a3427dd8f793173dde20469536bcef 142 Pfam PF02381 MraZ protein, putative antitoxin-like 73 128 2.0E-14 T 12-10-2018 IPR020603 MraZ domain Alide_3715 41a3427dd8f793173dde20469536bcef 142 SUPERFAMILY SSF89447 2 130 6.28E-39 T 12-10-2018 IPR037914 SpoVT-AbrB domain superfamily Alide_3028 f84a0ed2766474430da35e27436d2fec 62 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 7 61 7.3E-20 T 12-10-2018 IPR019201 Protein of unknown function DUF2065 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 Pfam PF00702 haloacid dehalogenase-like hydrolase 306 527 6.2E-41 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 312 318 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 SUPERFAMILY SSF81653 121 218 7.98E-26 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 Gene3D G3DSA:2.70.150.20 111 223 7.1E-36 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 SUPERFAMILY SSF56784 308 614 1.18E-54 T 12-10-2018 IPR036412 HAD-like superfamily Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 168 182 2.7E-26 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 537 549 2.7E-26 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 310 324 2.7E-26 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 460 470 2.7E-26 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 437 448 2.7E-26 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 513 532 2.7E-26 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 Gene3D G3DSA:3.40.50.1000 291 566 3.4E-91 T 12-10-2018 IPR023214 HAD superfamily Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 68 616 2.7E-175 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 485 501 1.2E-7 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 513 529 1.2E-7 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 545 570 1.2E-7 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 68 397 8.3E-95 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 Pfam PF00122 E1-E2 ATPase 120 289 3.3E-46 T 12-10-2018 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 SUPERFAMILY SSF81665 72 588 2.35E-15 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 92 592 2.7E-75 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2874 d2495ed30499ba929ebd34b63900ec77 639 Gene3D G3DSA:3.40.1110.10 321 444 3.4E-91 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_3485 5c1442283e1672cb37a055f075deafee 207 Gene3D G3DSA:2.60.370.10 65 198 1.0E-44 T 12-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3485 5c1442283e1672cb37a055f075deafee 207 SUPERFAMILY SSF110111 66 184 7.45E-47 T 12-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3485 5c1442283e1672cb37a055f075deafee 207 PIRSF PIRSF005413 3 201 8.0E-57 T 12-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3485 5c1442283e1672cb37a055f075deafee 207 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 29 182 2.5E-48 T 12-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2324 274ace8c885f07b16e2772f45562c3e1 405 SUPERFAMILY SSF89796 12 400 6.54E-119 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2324 274ace8c885f07b16e2772f45562c3e1 405 Gene3D G3DSA:3.40.50.10540 13 395 9.6E-117 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2324 274ace8c885f07b16e2772f45562c3e1 405 Gene3D G3DSA:3.30.1540.10 233 329 9.6E-117 T 12-10-2018 Alide_2324 274ace8c885f07b16e2772f45562c3e1 405 Pfam PF02515 CoA-transferase family III 14 377 2.6E-107 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0034 b2651a5b9efc5846cbcb27018643630e 625 Gene3D G3DSA:3.20.20.80 36 343 4.0E-25 T 12-10-2018 Alide_0034 b2651a5b9efc5846cbcb27018643630e 625 SUPERFAMILY SSF51445 45 326 1.9E-19 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily Alide_0034 b2651a5b9efc5846cbcb27018643630e 625 Gene3D G3DSA:3.40.50.880 402 576 1.1E-12 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_0034 b2651a5b9efc5846cbcb27018643630e 625 Pfam PF02449 Beta-galactosidase 43 204 2.9E-7 T 12-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 Alide_2021 1aefb479a60038cc624eacc3520b50a2 308 Pfam PF02272 DHHA1 domain 232 302 2.3E-9 T 12-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Alide_2021 1aefb479a60038cc624eacc3520b50a2 308 SUPERFAMILY SSF64182 20 302 3.03E-26 T 12-10-2018 IPR038763 DHH phosphoesterase superfamily Alide_2021 1aefb479a60038cc624eacc3520b50a2 308 Gene3D G3DSA:3.10.310.30 223 303 2.4E-9 T 12-10-2018 Alide_3803 fdb3aaad1b30890e2b5dd124199f6f0a 221 Gene3D G3DSA:1.20.1050.10 85 201 3.9E-16 T 12-10-2018 Alide_3803 fdb3aaad1b30890e2b5dd124199f6f0a 221 Gene3D G3DSA:3.40.30.10 1 80 2.9E-18 T 12-10-2018 Alide_3803 fdb3aaad1b30890e2b5dd124199f6f0a 221 Pfam PF14497 Glutathione S-transferase, C-terminal domain 121 200 6.3E-5 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal Alide_3803 fdb3aaad1b30890e2b5dd124199f6f0a 221 Pfam PF13417 Glutathione S-transferase, N-terminal domain 9 77 3.1E-11 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_3803 fdb3aaad1b30890e2b5dd124199f6f0a 221 SUPERFAMILY SSF52833 1 80 7.33E-16 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3803 fdb3aaad1b30890e2b5dd124199f6f0a 221 SUPERFAMILY SSF47616 90 202 9.47E-18 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_2425 77fbad13bef022dc6facbfd81c282419 148 Pfam PF09424 Yqey-like protein 4 146 2.1E-55 T 12-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 Alide_2425 77fbad13bef022dc6facbfd81c282419 148 Gene3D G3DSA:1.10.10.410 91 147 7.9E-19 T 12-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Alide_2425 77fbad13bef022dc6facbfd81c282419 148 Gene3D G3DSA:1.10.1510.10 1 90 6.2E-31 T 12-10-2018 Alide_2425 77fbad13bef022dc6facbfd81c282419 148 SUPERFAMILY SSF89095 1 146 1.36E-44 T 12-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 SUPERFAMILY SSF56059 8 392 9.42E-107 T 12-10-2018 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 SUPERFAMILY SSF51621 471 795 9.16E-94 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 Gene3D G3DSA:3.20.20.60 485 795 7.2E-100 T 12-10-2018 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 352 1.2E-115 T 12-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 486 793 1.6E-59 T 12-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 Gene3D G3DSA:3.30.1490.20 7 197 3.6E-70 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 421 432 - T 12-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 Pfam PF00391 PEP-utilising enzyme, mobile domain 391 462 5.1E-26 T 12-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 SUPERFAMILY SSF52009 354 474 5.1E-35 T 12-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 Gene3D G3DSA:3.30.470.20 198 363 2.0E-57 T 12-10-2018 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 Gene3D G3DSA:3.50.30.10 364 473 1.4E-40 T 12-10-2018 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 PIRSF PIRSF000854 5 796 0.0 T 12-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 701 719 - T 12-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Alide_2797 968b069a50d4ae5e0423f70ad641a19e 796 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 11 795 0.0 T 12-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 Alide_2793 b921d37d12f1648393ec6279906dd32b 184 SUPERFAMILY SSF50104 1 62 3.91E-14 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily Alide_2793 b921d37d12f1648393ec6279906dd32b 184 Gene3D G3DSA:2.30.30.30 1 63 2.0E-14 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 Alide_2793 b921d37d12f1648393ec6279906dd32b 184 ProSitePatterns PS01275 Elongation factor P signature. 149 168 - T 12-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site Alide_2793 b921d37d12f1648393ec6279906dd32b 184 Gene3D G3DSA:2.40.50.140 127 184 3.6E-26 T 12-10-2018 Alide_2793 b921d37d12f1648393ec6279906dd32b 184 SUPERFAMILY SSF50249 128 184 4.11E-17 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_2793 b921d37d12f1648393ec6279906dd32b 184 SMART SM01185 67 120 2.2E-13 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Alide_2793 b921d37d12f1648393ec6279906dd32b 184 Hamap MF_00141 Elongation factor P [efp]. 1 184 44.806 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Alide_2793 b921d37d12f1648393ec6279906dd32b 184 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 120 4.9E-15 T 12-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Alide_2793 b921d37d12f1648393ec6279906dd32b 184 Pfam PF09285 Elongation factor P, C-terminal 128 183 5.6E-24 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Alide_2793 b921d37d12f1648393ec6279906dd32b 184 TIGRFAM TIGR00038 efp: translation elongation factor P 4 184 9.9E-62 T 12-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Alide_2793 b921d37d12f1648393ec6279906dd32b 184 PIRSF PIRSF005901 1 184 2.1E-55 T 12-10-2018 IPR020599 Translation elongation factor P/YeiP Alide_2793 b921d37d12f1648393ec6279906dd32b 184 Gene3D G3DSA:2.40.50.140 64 126 6.1E-20 T 12-10-2018 Alide_2793 b921d37d12f1648393ec6279906dd32b 184 SUPERFAMILY SSF50249 65 126 3.21E-14 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_2793 b921d37d12f1648393ec6279906dd32b 184 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 60 8.0E-18 T 12-10-2018 IPR013185 Translation elongation factor, KOW-like Alide_2793 b921d37d12f1648393ec6279906dd32b 184 SMART SM00841 128 183 3.5E-28 T 12-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Alide_3921 55e31903050371f337ba899925dc12b9 284 SMART SM00382 41 242 2.4E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3921 55e31903050371f337ba899925dc12b9 284 SUPERFAMILY SSF52540 15 264 6.47E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3921 55e31903050371f337ba899925dc12b9 284 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 243 265 1.0E-5 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_3921 55e31903050371f337ba899925dc12b9 284 Gene3D G3DSA:3.40.50.300 3 280 7.4E-63 T 12-10-2018 Alide_3921 55e31903050371f337ba899925dc12b9 284 Pfam PF00005 ABC transporter 32 194 1.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 19 472 30.914 T 12-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 SUPERFAMILY SSF48295 369 472 1.44E-35 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 SMART SM00760 381 450 7.5E-44 T 12-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 Pfam PF11638 DnaA N-terminal domain 21 82 7.1E-17 T 12-10-2018 IPR024633 DnaA N-terminal domain Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 382 450 9.7E-33 T 12-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 22 471 1.0E-166 T 12-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 Gene3D G3DSA:3.30.300.180 19 129 1.3E-23 T 12-10-2018 IPR038454 DnaA, N-terminal domain superfamily Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 SUPERFAMILY SSF52540 138 349 1.54E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 ProSitePatterns PS01008 DnaA protein signature. 431 450 - T 12-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 Pfam PF00308 Bacterial dnaA protein 138 355 2.9E-83 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 Gene3D G3DSA:1.10.8.60 304 373 7.5E-25 T 12-10-2018 Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 Gene3D G3DSA:1.10.1750.10 374 472 2.4E-35 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 431 450 1.3E-47 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 269 296 1.3E-47 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 171 191 1.3E-47 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 203 217 1.3E-47 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 235 249 1.3E-47 T 12-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 SMART SM00382 170 304 7.4E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0001 b3fde0cb53eea2458a151a995dc3088a 473 Gene3D G3DSA:3.40.50.300 136 303 6.9E-46 T 12-10-2018 Alide_0516 9c69bacda6b46d6327b1203d4a6881c0 182 Pfam PF01814 Hemerythrin HHE cation binding domain 20 159 4.6E-16 T 12-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Alide_0516 9c69bacda6b46d6327b1203d4a6881c0 182 Gene3D G3DSA:1.20.120.520 7 180 4.0E-41 T 12-10-2018 Alide_1982 76e456036762e658649cfef67446b478 443 PRINTS PR00419 Adrenodoxin reductase family signature 32 45 3.2E-6 T 12-10-2018 Alide_1982 76e456036762e658649cfef67446b478 443 PRINTS PR00419 Adrenodoxin reductase family signature 9 31 3.2E-6 T 12-10-2018 Alide_1982 76e456036762e658649cfef67446b478 443 Gene3D G3DSA:3.90.660.50 88 389 1.6E-37 T 12-10-2018 Alide_1982 76e456036762e658649cfef67446b478 443 SUPERFAMILY SSF51905 10 435 1.07E-43 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1982 76e456036762e658649cfef67446b478 443 Pfam PF01593 Flavin containing amine oxidoreductase 17 388 1.9E-29 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Alide_1982 76e456036762e658649cfef67446b478 443 Gene3D G3DSA:3.50.50.60 12 406 1.6E-37 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2747 1ab4a63b1bedfd59b9b937c152957225 312 Pfam PF00665 Integrase core domain 119 230 1.7E-26 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_2747 1ab4a63b1bedfd59b9b937c152957225 312 Gene3D G3DSA:3.30.420.10 117 253 9.2E-11 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_2747 1ab4a63b1bedfd59b9b937c152957225 312 SUPERFAMILY SSF53098 113 277 6.83E-38 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_2747 1ab4a63b1bedfd59b9b937c152957225 312 Pfam PF13276 HTH-like domain 37 93 1.9E-15 T 12-10-2018 IPR025948 HTH-like domain Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 SUPERFAMILY SSF55073 530 687 9.42E-36 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 SUPERFAMILY SSF55785 399 484 1.56E-6 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 SUPERFAMILY SSF141868 713 950 7.59E-64 T 12-10-2018 IPR035919 EAL domain superfamily Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 Gene3D G3DSA:3.20.20.450 701 955 2.3E-70 T 12-10-2018 IPR035919 EAL domain superfamily Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 Gene3D G3DSA:3.30.450.20 391 523 5.8E-9 T 12-10-2018 Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 Pfam PF00990 Diguanylate cyclase, GGDEF domain 525 680 2.4E-35 T 12-10-2018 IPR000160 GGDEF domain Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 SMART SM00267 514 686 9.0E-47 T 12-10-2018 IPR000160 GGDEF domain Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 521 684 6.7E-31 T 12-10-2018 IPR000160 GGDEF domain Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 Gene3D G3DSA:3.30.70.270 524 698 1.4E-43 T 12-10-2018 Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 Pfam PF07695 7TM diverse intracellular signalling 194 378 2.0E-6 T 12-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 Pfam PF00563 EAL domain 714 939 3.6E-58 T 12-10-2018 IPR001633 EAL domain Alide_3817 82d6a3c13b0adae9e2c5fee449f0ad2b 986 SMART SM00052 698 945 2.7E-70 T 12-10-2018 IPR001633 EAL domain Alide_2452 802be1d16cedbf82796a321150a9e0e2 216 SUPERFAMILY SSF52218 1 203 5.12E-55 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_2452 802be1d16cedbf82796a321150a9e0e2 216 Gene3D G3DSA:3.40.50.360 2 204 1.1E-60 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_2452 802be1d16cedbf82796a321150a9e0e2 216 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 202 31.505 T 12-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 Alide_2452 802be1d16cedbf82796a321150a9e0e2 216 Pfam PF02525 Flavodoxin-like fold 1 201 7.7E-50 T 12-10-2018 IPR003680 Flavodoxin-like fold Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 186 196 8.0E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 8.0E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 8.0E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 8.0E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 202 210 8.0E-24 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 SUPERFAMILY SSF48163 306 465 3.14E-40 T 12-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 Gene3D G3DSA:1.10.8.70 322 380 3.3E-5 T 12-10-2018 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 5 465 6.9E-161 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 5 312 4.3E-94 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 Gene3D G3DSA:1.10.10.350 381 467 3.4E-19 T 12-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 5 467 30.062 T 12-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 SUPERFAMILY SSF52374 5 301 4.56E-106 T 12-10-2018 Alide_1515 fa277d81374e1724d7baa6cc08f14187 467 Gene3D G3DSA:3.40.50.620 4 321 3.6E-130 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1158 189cc6b5a135e7f5d7dbc4f6f41a916e 588 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 24 165 3.0E-14 T 12-10-2018 IPR007831 General secretory system II, protein E, N-terminal Alide_1158 189cc6b5a135e7f5d7dbc4f6f41a916e 588 SUPERFAMILY SSF52540 198 582 1.07E-94 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1158 189cc6b5a135e7f5d7dbc4f6f41a916e 588 SMART SM00382 336 457 8.2E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1158 189cc6b5a135e7f5d7dbc4f6f41a916e 588 SUPERFAMILY SSF160246 13 161 3.01E-14 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Alide_1158 189cc6b5a135e7f5d7dbc4f6f41a916e 588 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 403 417 - T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_1158 189cc6b5a135e7f5d7dbc4f6f41a916e 588 Gene3D G3DSA:3.30.450.90 179 308 4.8E-39 T 12-10-2018 Alide_1158 189cc6b5a135e7f5d7dbc4f6f41a916e 588 Pfam PF00437 Type II/IV secretion system protein 215 475 6.1E-76 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_1158 189cc6b5a135e7f5d7dbc4f6f41a916e 588 Gene3D G3DSA:3.40.50.300 311 585 2.1E-103 T 12-10-2018 Alide_2777 5c0d1b55158ff98dc85358803181336a 492 Gene3D G3DSA:1.10.4160.10 16 458 2.3E-47 T 12-10-2018 IPR038271 Purine-cytosine permease superfamily Alide_2777 5c0d1b55158ff98dc85358803181336a 492 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 22 440 3.1E-53 T 12-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 Alide_2777 5c0d1b55158ff98dc85358803181336a 492 PIRSF PIRSF002744 1 462 7.6E-112 T 12-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 146 159 - T 12-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 81 209 2.1E-52 T 12-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 Gene3D G3DSA:3.40.50.10860 79 214 5.8E-170 T 12-10-2018 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 PIRSF PIRSF000185 46 472 2.8E-117 T 12-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 SUPERFAMILY SSF51735 226 471 1.63E-74 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 226 470 1.1E-85 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 SUPERFAMILY SSF53223 31 220 3.2E-75 T 12-10-2018 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 Gene3D G3DSA:1.10.285.10 427 472 2.2E-8 T 12-10-2018 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 Gene3D G3DSA:3.40.50.720 233 397 5.8E-170 T 12-10-2018 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 138 152 1.7E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 259 279 1.7E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 396 407 1.7E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 217 239 1.7E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 Gene3D G3DSA:1.10.285.10 32 408 5.8E-170 T 12-10-2018 Alide_1063 ef0f41e46a3537f809d1e8f50162ded0 472 SMART SM00839 228 470 4.2E-91 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 9.0E-39 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 9.0E-39 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 9.0E-39 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 9.0E-39 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 9.0E-39 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 SMART SM00562 3 140 4.8E-81 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 Pfam PF00334 Nucleoside diphosphate kinase 4 135 1.6E-54 T 12-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.547 T 12-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 SUPERFAMILY SSF54919 1 138 1.96E-56 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3041 3529ebd527cb586b88167aa1e7c5e439 141 Gene3D G3DSA:3.30.70.141 1 141 2.6E-59 T 12-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 Pfam PF00117 Glutamine amidotransferase class-I 5 188 5.1E-56 T 12-10-2018 IPR017926 Glutamine amidotransferase Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 187 8.7E-78 T 12-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 45 59 7.2E-7 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 7.2E-7 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 SUPERFAMILY SSF52317 1 188 7.98E-59 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 6.0E-14 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00096 Glutamine amidotransferase superfamily signature 48 57 6.0E-14 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 6.0E-14 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 Gene3D G3DSA:3.40.50.880 1 189 2.1E-65 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00097 Anthranilate synthase component II signature 100 108 4.3E-35 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00097 Anthranilate synthase component II signature 48 57 4.3E-35 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00097 Anthranilate synthase component II signature 120 132 4.3E-35 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00097 Anthranilate synthase component II signature 3 17 4.3E-35 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00097 Anthranilate synthase component II signature 75 86 4.3E-35 T 12-10-2018 Alide_3993 e4dc1e46e1de0cb4753559af3f3e91e7 189 PRINTS PR00097 Anthranilate synthase component II signature 165 178 4.3E-35 T 12-10-2018 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 SUPERFAMILY SSF52172 5 162 1.21E-29 T 12-10-2018 IPR011006 CheY-like superfamily Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 SMART SM00421 152 209 4.4E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 Pfam PF00072 Response regulator receiver domain 9 129 3.1E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 1.8E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 1.8E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 1.8E-12 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 208 4.9E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 Gene3D G3DSA:3.40.50.2300 3 143 1.0E-41 T 12-10-2018 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 SMART SM00448 7 128 4.6E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 SUPERFAMILY SSF46894 140 209 6.12E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_4239 c653a4dc52b29781145cf48207a1d9c3 211 Gene3D G3DSA:1.10.10.10 145 210 3.9E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1801 416ab622e7526dd9025923286b3866dc 106 SUPERFAMILY SSF52218 1 66 6.88E-5 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_1801 416ab622e7526dd9025923286b3866dc 106 Gene3D G3DSA:3.40.50.360 1 75 7.2E-7 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_2451 ccc06d9be2bdcbc7d852defad596966b 305 Pfam PF03466 LysR substrate binding domain 88 294 1.7E-38 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2451 ccc06d9be2bdcbc7d852defad596966b 305 Gene3D G3DSA:3.40.190.10 93 291 4.8E-57 T 12-10-2018 Alide_2451 ccc06d9be2bdcbc7d852defad596966b 305 SUPERFAMILY SSF46785 3 88 1.69E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2451 ccc06d9be2bdcbc7d852defad596966b 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.6E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2451 ccc06d9be2bdcbc7d852defad596966b 305 Gene3D G3DSA:3.40.190.10 165 266 4.8E-57 T 12-10-2018 Alide_2451 ccc06d9be2bdcbc7d852defad596966b 305 SUPERFAMILY SSF53850 88 297 5.25E-41 T 12-10-2018 Alide_2451 ccc06d9be2bdcbc7d852defad596966b 305 Gene3D G3DSA:1.10.10.10 2 92 2.3E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1178 2c89d6f41080365723fb7ccb329826ca 348 PIRSF PIRSF004491 1 339 7.7E-82 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Alide_1178 2c89d6f41080365723fb7ccb329826ca 348 Gene3D G3DSA:2.40.30.30 192 343 1.8E-22 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 Alide_1178 2c89d6f41080365723fb7ccb329826ca 348 SMART SM00904 187 332 1.3E-46 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 Alide_1178 2c89d6f41080365723fb7ccb329826ca 348 Gene3D G3DSA:3.40.50.620 4 190 7.6E-57 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1178 2c89d6f41080365723fb7ccb329826ca 348 Pfam PF06574 FAD synthetase 13 171 4.2E-48 T 12-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Alide_1178 2c89d6f41080365723fb7ccb329826ca 348 SUPERFAMILY SSF82114 178 339 1.42E-30 T 12-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 Alide_1178 2c89d6f41080365723fb7ccb329826ca 348 Pfam PF01687 Riboflavin kinase 188 331 1.0E-26 T 12-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 Alide_1178 2c89d6f41080365723fb7ccb329826ca 348 SUPERFAMILY SSF52374 16 180 8.94E-31 T 12-10-2018 Alide_1178 2c89d6f41080365723fb7ccb329826ca 348 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 17 331 9.7E-72 T 12-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Alide_2210 e4d7e72222acf324ea70dfe140ed0457 107 SUPERFAMILY SSF89360 1 95 1.19E-31 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Alide_2210 e4d7e72222acf324ea70dfe140ed0457 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 1.3E-53 T 12-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 Alide_2210 e4d7e72222acf324ea70dfe140ed0457 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 5.1E-36 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 Alide_2210 e4d7e72222acf324ea70dfe140ed0457 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 Alide_2210 e4d7e72222acf324ea70dfe140ed0457 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.3E-22 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Alide_2210 e4d7e72222acf324ea70dfe140ed0457 107 Gene3D G3DSA:2.60.300.12 2 107 2.8E-36 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Alide_3751 cd4388fa54afc9c43d38b7be2b734d42 551 TIGRFAM TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase 3 540 6.9E-292 T 12-10-2018 IPR017621 Cyclohexanecarboxylate-CoA ligase Alide_3751 cd4388fa54afc9c43d38b7be2b734d42 551 Pfam PF13193 AMP-binding enzyme C-terminal domain 456 532 3.5E-12 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_3751 cd4388fa54afc9c43d38b7be2b734d42 551 ProSitePatterns PS00455 Putative AMP-binding domain signature. 202 213 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_3751 cd4388fa54afc9c43d38b7be2b734d42 551 Pfam PF00501 AMP-binding enzyme 34 447 2.1E-93 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_3751 cd4388fa54afc9c43d38b7be2b734d42 551 Gene3D G3DSA:3.40.50.12780 5 442 8.5E-107 T 12-10-2018 Alide_3751 cd4388fa54afc9c43d38b7be2b734d42 551 Gene3D G3DSA:3.30.300.310 443 549 9.4E-28 T 12-10-2018 Alide_3751 cd4388fa54afc9c43d38b7be2b734d42 551 SUPERFAMILY SSF56801 22 544 1.24E-137 T 12-10-2018 Alide_2355 821056fbf864545e16d0fa4a1ec4ac8e 372 Gene3D G3DSA:3.80.30.30 117 260 2.2E-5 T 12-10-2018 Alide_2355 821056fbf864545e16d0fa4a1ec4ac8e 372 SUPERFAMILY SSF102114 77 274 7.32E-8 T 12-10-2018 Alide_2355 821056fbf864545e16d0fa4a1ec4ac8e 372 Pfam PF04055 Radical SAM superfamily 79 254 2.0E-10 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_2903 d1ef77de7deceb3232f2ad5d5decb378 388 Gene3D G3DSA:3.40.50.2300 153 283 2.1E-65 T 12-10-2018 Alide_2903 d1ef77de7deceb3232f2ad5d5decb378 388 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 33 49 5.5E-6 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2903 d1ef77de7deceb3232f2ad5d5decb378 388 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 288 301 5.5E-6 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2903 d1ef77de7deceb3232f2ad5d5decb378 388 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 55 71 5.5E-6 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2903 d1ef77de7deceb3232f2ad5d5decb378 388 Pfam PF13458 Periplasmic binding protein 33 344 2.4E-52 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_2903 d1ef77de7deceb3232f2ad5d5decb378 388 SUPERFAMILY SSF53822 33 384 5.23E-65 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2903 d1ef77de7deceb3232f2ad5d5decb378 388 Gene3D G3DSA:3.40.50.2300 34 341 2.1E-65 T 12-10-2018 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 146 354 2.5E-49 T 12-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 3 368 31.762 T 12-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 Gene3D G3DSA:3.40.50.720 6 357 4.7E-136 T 12-10-2018 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 Gene3D G3DSA:3.30.360.10 137 351 4.7E-136 T 12-10-2018 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 SUPERFAMILY SSF51735 6 149 3.01E-48 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3143 8d794a20a172afeb848625a6f11594f6 370 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 5 368 2.8E-197 T 12-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 262 276 - T 12-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 122 5.5E-25 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 PIRSF PIRSF000148 3 370 3.3E-61 T 12-10-2018 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 SUPERFAMILY SSF55347 136 355 1.07E-69 T 12-10-2018 Alide_3143 8d794a20a172afeb848625a6f11594f6 370 SMART SM00859 5 124 5.2E-25 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Alide_4521 735bef5d6dc5b1fd296a5e9699503efd 106 SUPERFAMILY SSF81273 67 106 4.32E-7 T 12-10-2018 Alide_4521 735bef5d6dc5b1fd296a5e9699503efd 106 Gene3D G3DSA:4.10.430.10 59 106 1.0E-14 T 12-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 Alide_4521 735bef5d6dc5b1fd296a5e9699503efd 106 Pfam PF00816 H-NS histone family 6 99 4.0E-20 T 12-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 Alide_4521 735bef5d6dc5b1fd296a5e9699503efd 106 SMART SM00528 62 106 1.3E-5 T 12-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 Alide_1532 ba3d070277f42bedd5e8e7e6a41ff904 349 Pfam PF13416 Bacterial extracellular solute-binding protein 43 313 2.7E-26 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein Alide_1532 ba3d070277f42bedd5e8e7e6a41ff904 349 SUPERFAMILY SSF53850 22 336 6.42E-77 T 12-10-2018 Alide_1532 ba3d070277f42bedd5e8e7e6a41ff904 349 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 126 143 - T 12-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 Alide_1532 ba3d070277f42bedd5e8e7e6a41ff904 349 Gene3D G3DSA:3.40.190.10 28 308 4.2E-111 T 12-10-2018 Alide_1532 ba3d070277f42bedd5e8e7e6a41ff904 349 Gene3D G3DSA:3.40.190.10 131 347 4.2E-111 T 12-10-2018 Alide_1532 ba3d070277f42bedd5e8e7e6a41ff904 349 PIRSF PIRSF002825 2 349 1.4E-74 T 12-10-2018 IPR026045 Ferric binding protein Alide_2447 82157dcffd904d817375c61ff4ddeb20 297 SUPERFAMILY SSF161098 20 271 2.49E-55 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2447 82157dcffd904d817375c61ff4ddeb20 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 271 1.8E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_2447 82157dcffd904d817375c61ff4ddeb20 297 Gene3D G3DSA:1.10.3720.10 23 284 1.1E-64 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2447 82157dcffd904d817375c61ff4ddeb20 297 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 21 280 5.9E-129 T 12-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 Alide_2447 82157dcffd904d817375c61ff4ddeb20 297 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 17 277 1.7E-101 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 Alide_2971 68b6191b2c35249fc30bb62bf4cfec10 239 SMART SM00382 31 215 7.1E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2971 68b6191b2c35249fc30bb62bf4cfec10 239 Pfam PF00005 ABC transporter 23 167 4.6E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2971 68b6191b2c35249fc30bb62bf4cfec10 239 Gene3D G3DSA:3.40.50.300 2 239 1.2E-63 T 12-10-2018 Alide_2971 68b6191b2c35249fc30bb62bf4cfec10 239 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2971 68b6191b2c35249fc30bb62bf4cfec10 239 SUPERFAMILY SSF52540 5 237 5.43E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 SUPERFAMILY SSF88946 26 133 6.41E-40 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 277 303 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 PRINTS PR00046 Major sigma-70 factor signature 88 101 6.9E-16 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 PRINTS PR00046 Major sigma-70 factor signature 277 292 6.9E-16 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 PRINTS PR00046 Major sigma-70 factor signature 112 120 6.9E-16 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 PRINTS PR00046 Major sigma-70 factor signature 292 303 6.9E-16 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 Gene3D G3DSA:1.10.10.10 232 309 1.8E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 59 307 1.1E-31 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 Pfam PF04542 Sigma-70 region 2 64 133 4.0E-17 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 88 101 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 Gene3D G3DSA:1.10.601.10 23 136 1.1E-29 T 12-10-2018 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 25 308 2.8E-119 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 SUPERFAMILY SSF88659 221 309 5.23E-15 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 12 309 50.116 T 12-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 Pfam PF04545 Sigma-70, region 4 249 305 1.3E-14 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Alide_3475 d0478fbce7b5411ed923cbe81b8776b8 311 Pfam PF00140 Sigma-70 factor, region 1.2 27 56 5.3E-5 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_3646 be81bb05161ed9a65be89d6a06fff02a 460 SMART SM00304 183 237 2.0E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_3646 be81bb05161ed9a65be89d6a06fff02a 460 Gene3D G3DSA:1.10.287.130 187 304 6.6E-21 T 12-10-2018 Alide_3646 be81bb05161ed9a65be89d6a06fff02a 460 Pfam PF00672 HAMP domain 185 232 7.8E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_3646 be81bb05161ed9a65be89d6a06fff02a 460 SUPERFAMILY SSF47384 222 304 1.79E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_3646 be81bb05161ed9a65be89d6a06fff02a 460 Gene3D G3DSA:3.30.565.10 311 458 3.7E-22 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3646 be81bb05161ed9a65be89d6a06fff02a 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 455 1.2E-9 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3646 be81bb05161ed9a65be89d6a06fff02a 460 SUPERFAMILY SSF55874 293 455 7.12E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3646 be81bb05161ed9a65be89d6a06fff02a 460 SMART SM00387 349 457 7.1E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3646 be81bb05161ed9a65be89d6a06fff02a 460 SMART SM00388 238 304 6.3E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_4173 ee204cccebe26418ccaa52ea025fb160 294 SUPERFAMILY SSF53850 89 292 6.83E-30 T 12-10-2018 Alide_4173 ee204cccebe26418ccaa52ea025fb160 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.3E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4173 ee204cccebe26418ccaa52ea025fb160 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.3E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4173 ee204cccebe26418ccaa52ea025fb160 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.3E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4173 ee204cccebe26418ccaa52ea025fb160 294 SUPERFAMILY SSF46785 1 110 2.82E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4173 ee204cccebe26418ccaa52ea025fb160 294 Pfam PF03466 LysR substrate binding domain 87 289 9.5E-31 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4173 ee204cccebe26418ccaa52ea025fb160 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.5E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4173 ee204cccebe26418ccaa52ea025fb160 294 Gene3D G3DSA:3.40.190.290 90 292 8.8E-34 T 12-10-2018 Alide_4173 ee204cccebe26418ccaa52ea025fb160 294 Gene3D G3DSA:1.10.10.10 1 88 1.1E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0048 227d036f23036ecbc3cd09316095f25f 659 Pfam PF13932 GidA associated domain 410 634 3.0E-76 T 12-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 Alide_0048 227d036f23036ecbc3cd09316095f25f 659 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 376 399 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Alide_0048 227d036f23036ecbc3cd09316095f25f 659 Pfam PF01134 Glucose inhibited division protein A 8 406 1.6E-162 T 12-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Alide_0048 227d036f23036ecbc3cd09316095f25f 659 Gene3D G3DSA:1.10.150.570 587 640 7.7E-25 T 12-10-2018 Alide_0048 227d036f23036ecbc3cd09316095f25f 659 Gene3D G3DSA:1.10.10.1800 467 568 2.4E-27 T 12-10-2018 Alide_0048 227d036f23036ecbc3cd09316095f25f 659 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 281 295 - T 12-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Alide_0048 227d036f23036ecbc3cd09316095f25f 659 SUPERFAMILY SSF51905 5 269 2.84E-48 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0048 227d036f23036ecbc3cd09316095f25f 659 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 642 42.701 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Alide_0048 227d036f23036ecbc3cd09316095f25f 659 SMART SM01228 564 635 4.2E-45 T 12-10-2018 Alide_0048 227d036f23036ecbc3cd09316095f25f 659 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 639 2.3E-268 T 12-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Alide_0048 227d036f23036ecbc3cd09316095f25f 659 Gene3D G3DSA:3.50.50.60 303 466 8.9E-57 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0048 227d036f23036ecbc3cd09316095f25f 659 Gene3D G3DSA:3.50.50.60 2 220 3.2E-87 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3482 01df4c6ff9a555a71ccc353ff8e3fe87 77 Pfam PF11137 Protein of unknown function (DUF2909) 4 67 1.7E-27 T 12-10-2018 IPR021313 Protein of unknown function DUF2909 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 210 762 1.6E-177 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 Gene3D G3DSA:2.70.150.20 249 365 7.7E-36 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 464 470 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 SUPERFAMILY SSF56784 461 759 1.57E-54 T 12-10-2018 IPR036412 HAD-like superfamily Alide_0231 56099b25437437f6a9e47911454eaa1d 769 Pfam PF00702 haloacid dehalogenase-like hydrolase 458 673 1.3E-37 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 233 736 2.4E-78 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 SUPERFAMILY SSF55008 1 57 3.67E-7 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 192 762 1.4E-121 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 Gene3D G3DSA:3.30.70.100 62 126 8.8E-8 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 SUPERFAMILY SSF81653 269 361 1.26E-22 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 SUPERFAMILY SSF81665 210 453 2.22E-15 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00941 Cadmium-transporting ATPase signature 327 343 1.3E-14 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00941 Cadmium-transporting ATPase signature 66 75 1.3E-14 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00941 Cadmium-transporting ATPase signature 245 265 1.3E-14 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00941 Cadmium-transporting ATPase signature 77 98 1.3E-14 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00941 Cadmium-transporting ATPase signature 191 203 1.3E-14 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00941 Cadmium-transporting ATPase signature 346 360 1.3E-14 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 Pfam PF00122 E1-E2 ATPase 261 442 9.7E-51 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 Gene3D G3DSA:3.40.50.1000 443 712 3.8E-81 T 12-10-2018 IPR023214 HAD superfamily Alide_0231 56099b25437437f6a9e47911454eaa1d 769 Pfam PF00403 Heavy-metal-associated domain 65 124 5.9E-8 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 210 547 3.3E-94 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 Gene3D G3DSA:3.40.1110.10 473 591 3.8E-81 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 SUPERFAMILY SSF55008 65 129 2.88E-10 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 659 678 3.3E-26 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 606 616 3.3E-26 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 683 695 3.3E-26 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 311 325 3.3E-26 T 12-10-2018 Alide_0231 56099b25437437f6a9e47911454eaa1d 769 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 462 476 3.3E-26 T 12-10-2018 Alide_2211 0b33da86e08f30b39732347ac812beec 172 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 5 171 20.196 T 12-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_2211 0b33da86e08f30b39732347ac812beec 172 SMART SM00271 5 70 4.7E-4 T 12-10-2018 IPR001623 DnaJ domain Alide_2211 0b33da86e08f30b39732347ac812beec 172 Pfam PF07743 HSCB C-terminal oligomerisation domain 91 164 1.2E-17 T 12-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_2211 0b33da86e08f30b39732347ac812beec 172 Gene3D G3DSA:1.10.287.110 6 82 2.6E-20 T 12-10-2018 IPR036869 Chaperone J-domain superfamily Alide_2211 0b33da86e08f30b39732347ac812beec 172 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 21 168 5.3E-28 T 12-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_2211 0b33da86e08f30b39732347ac812beec 172 SUPERFAMILY SSF46565 6 79 1.44E-16 T 12-10-2018 IPR036869 Chaperone J-domain superfamily Alide_2211 0b33da86e08f30b39732347ac812beec 172 Gene3D G3DSA:1.20.1280.20 84 171 2.6E-19 T 12-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_2211 0b33da86e08f30b39732347ac812beec 172 SUPERFAMILY SSF47144 83 170 4.58E-18 T 12-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 Alide_4231 7d0f284d271699495f392506a37af0fd 631 Pfam PF02355 Protein export membrane protein 429 599 4.3E-18 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Alide_4231 7d0f284d271699495f392506a37af0fd 631 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 355 589 8.7E-71 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Alide_4231 7d0f284d271699495f392506a37af0fd 631 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 610 47.102 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Alide_4231 7d0f284d271699495f392506a37af0fd 631 Gene3D G3DSA:3.30.1360.200 285 427 4.3E-60 T 12-10-2018 Alide_4231 7d0f284d271699495f392506a37af0fd 631 Gene3D G3DSA:3.30.70.3400 227 431 4.3E-60 T 12-10-2018 Alide_4231 7d0f284d271699495f392506a37af0fd 631 SUPERFAMILY SSF82866 406 605 5.49E-38 T 12-10-2018 Alide_4231 7d0f284d271699495f392506a37af0fd 631 Gene3D G3DSA:1.20.1640.10 432 609 5.9E-11 T 12-10-2018 Alide_4231 7d0f284d271699495f392506a37af0fd 631 Pfam PF13721 SecD export protein N-terminal TM region 1 108 2.9E-36 T 12-10-2018 IPR027398 SecD export protein N-terminal TM domain Alide_4231 7d0f284d271699495f392506a37af0fd 631 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 128 596 6.7E-143 T 12-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Alide_4231 7d0f284d271699495f392506a37af0fd 631 Pfam PF07549 SecD/SecF GG Motif 121 146 4.5E-6 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Alide_2895 3147190ca57f4b4ad917465657c3a159 652 SMART SM00278 631 650 170.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Alide_2895 3147190ca57f4b4ad917465657c3a159 652 SMART SM00278 599 618 2.1 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Alide_2895 3147190ca57f4b4ad917465657c3a159 652 SUPERFAMILY SSF82771 19 102 4.18E-20 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Alide_2895 3147190ca57f4b4ad917465657c3a159 652 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 11 632 1.7E-151 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 Alide_2895 3147190ca57f4b4ad917465657c3a159 652 Gene3D G3DSA:4.10.860.10 215 254 3.6E-6 T 12-10-2018 Alide_2895 3147190ca57f4b4ad917465657c3a159 652 Gene3D G3DSA:1.10.150.20 598 652 4.1E-22 T 12-10-2018 Alide_2895 3147190ca57f4b4ad917465657c3a159 652 SMART SM00465 19 100 2.0E-17 T 12-10-2018 IPR000305 GIY-YIG endonuclease Alide_2895 3147190ca57f4b4ad917465657c3a159 652 SUPERFAMILY SSF46600 205 256 6.28E-12 T 12-10-2018 IPR036876 UVR domain superfamily Alide_2895 3147190ca57f4b4ad917465657c3a159 652 Hamap MF_00203 UvrABC system protein C [uvrC]. 6 650 26.389 T 12-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 Alide_2895 3147190ca57f4b4ad917465657c3a159 652 SUPERFAMILY SSF47781 563 652 2.07E-18 T 12-10-2018 IPR010994 RuvA domain 2-like Alide_2895 3147190ca57f4b4ad917465657c3a159 652 Pfam PF14520 Helix-hairpin-helix domain 601 652 2.1E-6 T 12-10-2018 Alide_2895 3147190ca57f4b4ad917465657c3a159 652 Gene3D G3DSA:3.30.420.340 409 584 5.0E-46 T 12-10-2018 IPR038476 UvrC homology region 2 superfamily Alide_2895 3147190ca57f4b4ad917465657c3a159 652 Pfam PF02151 UvrB/uvrC motif 218 250 1.0E-7 T 12-10-2018 IPR001943 UVR domain GO:0005515 Alide_2895 3147190ca57f4b4ad917465657c3a159 652 Pfam PF01541 GIY-YIG catalytic domain 21 95 3.8E-10 T 12-10-2018 IPR000305 GIY-YIG endonuclease Alide_2895 3147190ca57f4b4ad917465657c3a159 652 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 427 584 1.5E-45 T 12-10-2018 IPR001162 UvrC family homology region Alide_2895 3147190ca57f4b4ad917465657c3a159 652 Gene3D G3DSA:3.40.1440.10 6 104 4.4E-30 T 12-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Alide_0281 1151d65c250a04fded4dac5efc7c6c78 384 SUPERFAMILY SSF47203 225 379 2.58E-40 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0281 1151d65c250a04fded4dac5efc7c6c78 384 Gene3D G3DSA:1.20.140.10 231 376 1.5E-38 T 12-10-2018 Alide_0281 1151d65c250a04fded4dac5efc7c6c78 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 7.5E-22 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0281 1151d65c250a04fded4dac5efc7c6c78 384 Gene3D G3DSA:1.10.540.10 1 118 5.3E-27 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0281 1151d65c250a04fded4dac5efc7c6c78 384 SUPERFAMILY SSF56645 1 225 7.2E-58 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0281 1151d65c250a04fded4dac5efc7c6c78 384 Gene3D G3DSA:2.40.110.10 122 230 1.7E-28 T 12-10-2018 Alide_0281 1151d65c250a04fded4dac5efc7c6c78 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 213 1.9E-18 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0281 1151d65c250a04fded4dac5efc7c6c78 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 226 372 2.3E-34 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0964 0b38f18fe3e82fd3d4281874036ea1d9 241 Pfam PF01227 GTP cyclohydrolase I 58 237 1.5E-53 T 12-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 Alide_0964 0b38f18fe3e82fd3d4281874036ea1d9 241 Gene3D G3DSA:1.10.286.10 46 102 1.1E-5 T 12-10-2018 Alide_0964 0b38f18fe3e82fd3d4281874036ea1d9 241 Gene3D G3DSA:3.30.1130.10 104 240 6.2E-42 T 12-10-2018 Alide_0964 0b38f18fe3e82fd3d4281874036ea1d9 241 SUPERFAMILY SSF55620 21 238 1.11E-65 T 12-10-2018 Alide_1708 b7bce921a6977f4ae26ce39b5c2238ae 60 Gene3D G3DSA:3.30.920.30 1 59 3.5E-32 T 12-10-2018 IPR038570 HicA superfamily Alide_1708 b7bce921a6977f4ae26ce39b5c2238ae 60 SUPERFAMILY SSF54786 1 59 4.32E-18 T 12-10-2018 Alide_1708 b7bce921a6977f4ae26ce39b5c2238ae 60 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 6 59 1.0E-22 T 12-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 Alide_2911 22bef6c3e2fda5fdbcc5ebc9a521b4f6 269 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 262 4.5E-46 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_2911 22bef6c3e2fda5fdbcc5ebc9a521b4f6 269 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_2911 22bef6c3e2fda5fdbcc5ebc9a521b4f6 269 SUPERFAMILY SSF52096 13 262 6.79E-69 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2911 22bef6c3e2fda5fdbcc5ebc9a521b4f6 269 Gene3D G3DSA:1.10.12.10 207 263 5.8E-29 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_2911 22bef6c3e2fda5fdbcc5ebc9a521b4f6 269 Gene3D G3DSA:3.90.226.10 1 206 2.0E-64 T 12-10-2018 Alide_1901 8edbb0b1b9a4ad368db94d46298583f6 286 Gene3D G3DSA:3.20.20.60 1 286 2.5E-97 T 12-10-2018 Alide_1901 8edbb0b1b9a4ad368db94d46298583f6 286 SUPERFAMILY SSF51621 5 285 2.6E-89 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_1901 8edbb0b1b9a4ad368db94d46298583f6 286 Pfam PF13714 Phosphoenolpyruvate phosphomutase 7 248 4.6E-53 T 12-10-2018 Alide_1326 37eb4e6084378ba3fc712b1c38d508fd 397 Gene3D G3DSA:3.40.50.10540 7 390 4.5E-116 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1326 37eb4e6084378ba3fc712b1c38d508fd 397 Pfam PF02515 CoA-transferase family III 8 373 4.0E-116 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_1326 37eb4e6084378ba3fc712b1c38d508fd 397 SUPERFAMILY SSF89796 4 396 1.31E-122 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1326 37eb4e6084378ba3fc712b1c38d508fd 397 Gene3D G3DSA:3.30.1540.10 223 321 4.5E-116 T 12-10-2018 Alide_1359 db5c11641baac7e497c90f9a39401d8c 340 Gene3D G3DSA:2.40.160.10 21 340 1.2E-70 T 12-10-2018 IPR023614 Porin domain superfamily Alide_1359 db5c11641baac7e497c90f9a39401d8c 340 SUPERFAMILY SSF56935 21 340 5.76E-66 T 12-10-2018 Alide_1359 db5c11641baac7e497c90f9a39401d8c 340 Pfam PF13609 Gram-negative porin 7 322 3.2E-53 T 12-10-2018 Alide_1340 88d5beb25799d5dd7367722b782d493d 358 SUPERFAMILY SSF52540 8 224 4.99E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1340 88d5beb25799d5dd7367722b782d493d 358 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 7 356 9.1E-135 T 12-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 Alide_1340 88d5beb25799d5dd7367722b782d493d 358 Pfam PF00005 ABC transporter 19 161 3.7E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1340 88d5beb25799d5dd7367722b782d493d 358 Pfam PF03459 TOBE domain 295 355 1.7E-14 T 12-10-2018 IPR005116 Transport-associated OB, type 1 Alide_1340 88d5beb25799d5dd7367722b782d493d 358 Gene3D G3DSA:2.40.50.100 294 357 1.3E-14 T 12-10-2018 Alide_1340 88d5beb25799d5dd7367722b782d493d 358 Gene3D G3DSA:3.40.50.300 13 256 2.7E-63 T 12-10-2018 Alide_1340 88d5beb25799d5dd7367722b782d493d 358 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1340 88d5beb25799d5dd7367722b782d493d 358 SUPERFAMILY SSF50331 239 356 2.31E-21 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_1340 88d5beb25799d5dd7367722b782d493d 358 SMART SM00382 25 211 1.5E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3472 11bd0c29b08e988e6adc04aa695575fd 113 SUPERFAMILY SSF54913 22 103 7.94E-5 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Alide_3472 11bd0c29b08e988e6adc04aa695575fd 113 Gene3D G3DSA:3.30.70.120 17 113 9.0E-21 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Alide_3472 11bd0c29b08e988e6adc04aa695575fd 113 Pfam PF11582 Protein of unknown function (DUF3240) 17 112 9.5E-30 T 12-10-2018 IPR021634 Protein of unknown function DUF3240 Alide_2311 c58844f6ab1cb7aac9987199fcbc7e67 346 Gene3D G3DSA:3.40.50.2300 62 150 1.1E-15 T 12-10-2018 Alide_2311 c58844f6ab1cb7aac9987199fcbc7e67 346 SMART SM00354 4 74 5.3E-19 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Alide_2311 c58844f6ab1cb7aac9987199fcbc7e67 346 SUPERFAMILY SSF47413 5 62 5.06E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_2311 c58844f6ab1cb7aac9987199fcbc7e67 346 SUPERFAMILY SSF53822 62 330 8.01E-60 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2311 c58844f6ab1cb7aac9987199fcbc7e67 346 Gene3D G3DSA:1.10.260.40 1 61 4.4E-19 T 12-10-2018 Alide_2311 c58844f6ab1cb7aac9987199fcbc7e67 346 Gene3D G3DSA:3.40.50.2300 158 335 2.4E-50 T 12-10-2018 Alide_2311 c58844f6ab1cb7aac9987199fcbc7e67 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 51 6.2E-13 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Alide_2311 c58844f6ab1cb7aac9987199fcbc7e67 346 Pfam PF13377 Periplasmic binding protein-like domain 175 333 3.5E-34 T 12-10-2018 Alide_1753 452ed4ceb67996e671d3b47188efec1d 552 Gene3D G3DSA:3.60.110.10 1 263 1.6E-89 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Alide_1753 452ed4ceb67996e671d3b47188efec1d 552 SUPERFAMILY SSF52402 270 536 2.56E-77 T 12-10-2018 Alide_1753 452ed4ceb67996e671d3b47188efec1d 552 SUPERFAMILY SSF56317 4 250 1.96E-58 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Alide_1753 452ed4ceb67996e671d3b47188efec1d 552 TIGRFAM TIGR00552 nadE: NAD+ synthetase 280 529 5.1E-60 T 12-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 Alide_1753 452ed4ceb67996e671d3b47188efec1d 552 Gene3D G3DSA:3.40.50.620 270 552 1.8E-119 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1753 452ed4ceb67996e671d3b47188efec1d 552 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 3 552 29.701 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Alide_1753 452ed4ceb67996e671d3b47188efec1d 552 Pfam PF00795 Carbon-nitrogen hydrolase 6 253 3.9E-31 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Alide_1753 452ed4ceb67996e671d3b47188efec1d 552 PIRSF PIRSF006630 2 552 2.6E-193 T 12-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Alide_1753 452ed4ceb67996e671d3b47188efec1d 552 Pfam PF02540 NAD synthase 273 527 2.7E-72 T 12-10-2018 IPR022310 NAD/GMP synthase Alide_1214 0067fa4a6d654df0b8617c6291d234b1 203 Hamap MF_00045 Oligoribonuclease [orn]. 25 203 41.071 T 12-10-2018 IPR022894 Oligoribonuclease GO:0000175 Alide_1214 0067fa4a6d654df0b8617c6291d234b1 203 SUPERFAMILY SSF53098 26 202 4.38E-46 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1214 0067fa4a6d654df0b8617c6291d234b1 203 Gene3D G3DSA:3.30.420.10 20 202 2.6E-70 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1214 0067fa4a6d654df0b8617c6291d234b1 203 Pfam PF00929 Exonuclease 31 192 5.1E-31 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_1214 0067fa4a6d654df0b8617c6291d234b1 203 SMART SM00479 29 202 1.9E-24 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_1227 d0e060c1c5c1a719acf1f52995e60450 651 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 166 1.2E-27 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_1227 d0e060c1c5c1a719acf1f52995e60450 651 SUPERFAMILY SSF56935 46 651 3.14E-119 T 12-10-2018 Alide_1227 d0e060c1c5c1a719acf1f52995e60450 651 Gene3D G3DSA:2.170.130.10 42 171 2.7E-38 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_1227 d0e060c1c5c1a719acf1f52995e60450 651 Gene3D G3DSA:2.40.170.20 177 651 6.6E-105 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Alide_1227 d0e060c1c5c1a719acf1f52995e60450 651 Pfam PF00593 TonB dependent receptor 271 649 2.9E-53 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_4405 9ae29d127d8497696a28fa68f3733eb7 398 SUPERFAMILY SSF54373 264 355 4.58E-12 T 12-10-2018 Alide_4405 9ae29d127d8497696a28fa68f3733eb7 398 Gene3D G3DSA:3.30.9.10 128 354 4.4E-49 T 12-10-2018 Alide_4405 9ae29d127d8497696a28fa68f3733eb7 398 Gene3D G3DSA:3.50.50.60 2 45 7.1E-13 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4405 9ae29d127d8497696a28fa68f3733eb7 398 Gene3D G3DSA:3.50.50.60 98 396 4.4E-49 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4405 9ae29d127d8497696a28fa68f3733eb7 398 Pfam PF01266 FAD dependent oxidoreductase 2 394 8.1E-61 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_4405 9ae29d127d8497696a28fa68f3733eb7 398 SUPERFAMILY SSF51905 2 398 2.85E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3667 073be6144157bbd8150f6bd172c158e3 449 Gene3D G3DSA:3.40.50.20 1 85 1.4E-33 T 12-10-2018 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.1E-44 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 442 4.4E-39 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 SUPERFAMILY SSF56059 83 349 1.85E-71 T 12-10-2018 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 SMART SM00878 336 441 9.5E-66 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 SUPERFAMILY SSF52440 1 113 4.89E-47 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_3667 073be6144157bbd8150f6bd172c158e3 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 5.1E-80 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 Gene3D G3DSA:3.30.470.20 87 433 1.9E-153 T 12-10-2018 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 SUPERFAMILY SSF51246 331 445 9.42E-44 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 Gene3D G3DSA:3.30.1490.20 131 203 1.9E-153 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_3667 073be6144157bbd8150f6bd172c158e3 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 2.4E-224 T 12-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 Alide_3095 2391c5a819b7add6f6357167c14ab217 266 PIRSF PIRSF006241 1 261 3.4E-96 T 12-10-2018 IPR026040 Hydroxypyruvate isomerase-like Alide_3095 2391c5a819b7add6f6357167c14ab217 266 SUPERFAMILY SSF51658 1 256 2.36E-86 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily Alide_3095 2391c5a819b7add6f6357167c14ab217 266 Pfam PF01261 Xylose isomerase-like TIM barrel 21 218 5.6E-35 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Alide_3095 2391c5a819b7add6f6357167c14ab217 266 Gene3D G3DSA:3.20.20.150 1 262 5.2E-81 T 12-10-2018 Alide_3095 2391c5a819b7add6f6357167c14ab217 266 TIGRFAM TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase 2 255 3.7E-118 T 12-10-2018 IPR017643 Hydroxypyruvate isomerase KEGG: 00630+5.3.1.22 Alide_3618 0fa9bd747b96ddc9b674c3f3d7173b47 222 SUPERFAMILY SSF52172 3 179 1.57E-38 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3618 0fa9bd747b96ddc9b674c3f3d7173b47 222 SMART SM00448 5 116 3.9E-36 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3618 0fa9bd747b96ddc9b674c3f3d7173b47 222 Gene3D G3DSA:1.10.10.10 126 221 2.4E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3618 0fa9bd747b96ddc9b674c3f3d7173b47 222 Gene3D G3DSA:3.40.50.2300 2 125 1.7E-40 T 12-10-2018 Alide_3618 0fa9bd747b96ddc9b674c3f3d7173b47 222 SMART SM00862 149 220 1.5E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3618 0fa9bd747b96ddc9b674c3f3d7173b47 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 219 5.6E-18 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3618 0fa9bd747b96ddc9b674c3f3d7173b47 222 Pfam PF00072 Response regulator receiver domain 8 117 4.4E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1420 89275ad6971a7f4687cf88b3202d9ec3 413 Gene3D G3DSA:3.30.1540.10 247 338 1.8E-146 T 12-10-2018 Alide_1420 89275ad6971a7f4687cf88b3202d9ec3 413 Gene3D G3DSA:3.40.50.10540 9 407 1.8E-146 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1420 89275ad6971a7f4687cf88b3202d9ec3 413 SUPERFAMILY SSF89796 7 413 8.24E-144 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1420 89275ad6971a7f4687cf88b3202d9ec3 413 Pfam PF02515 CoA-transferase family III 9 390 1.8E-134 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 46 63 - T 12-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 140 170 - T 12-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 Gene3D G3DSA:3.20.20.70 2 295 6.6E-81 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 SUPERFAMILY SSF51569 9 291 6.38E-77 T 12-10-2018 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 Pfam PF00701 Dihydrodipicolinate synthetase family 10 289 3.7E-53 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 17 286 1.2E-65 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 9 292 42.786 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 SMART SM01130 9 293 1.4E-84 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 43 64 3.1E-13 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 135 152 3.1E-13 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 110 126 3.1E-13 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_3265 16a149c7e9765bf791f73e7782d6071d 300 PIRSF PIRSF001365 7 299 2.9E-70 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2415 3469fc52a320d581e9daddfb1fdf89b3 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 217 2.5E-20 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2415 3469fc52a320d581e9daddfb1fdf89b3 382 Gene3D G3DSA:2.40.110.10 124 234 3.8E-29 T 12-10-2018 Alide_2415 3469fc52a320d581e9daddfb1fdf89b3 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 378 4.0E-41 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2415 3469fc52a320d581e9daddfb1fdf89b3 382 Gene3D G3DSA:1.10.540.10 1 122 2.0E-33 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2415 3469fc52a320d581e9daddfb1fdf89b3 382 SUPERFAMILY SSF47203 236 378 1.47E-46 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2415 3469fc52a320d581e9daddfb1fdf89b3 382 SUPERFAMILY SSF56645 2 228 7.2E-64 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2415 3469fc52a320d581e9daddfb1fdf89b3 382 PIRSF PIRSF016578 6 367 2.8E-17 T 12-10-2018 Alide_2415 3469fc52a320d581e9daddfb1fdf89b3 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 120 7.4E-27 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2415 3469fc52a320d581e9daddfb1fdf89b3 382 Gene3D G3DSA:1.20.140.10 235 380 1.4E-47 T 12-10-2018 Alide_0880 290807d6d82b26c18ff74a3681e43e54 247 Pfam PF00977 Histidine biosynthesis protein 3 232 5.3E-80 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Alide_0880 290807d6d82b26c18ff74a3681e43e54 247 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 240 36.386 T 12-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Alide_0880 290807d6d82b26c18ff74a3681e43e54 247 SUPERFAMILY SSF51366 1 238 8.63E-76 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Alide_0880 290807d6d82b26c18ff74a3681e43e54 247 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 235 1.1E-77 T 12-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Alide_0880 290807d6d82b26c18ff74a3681e43e54 247 Gene3D G3DSA:3.20.20.70 1 242 7.7E-88 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3720 f693847b504af41ac8fa8a15dc4f2686 356 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 185 1.1E-54 T 12-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Alide_3720 f693847b504af41ac8fa8a15dc4f2686 356 Gene3D G3DSA:3.40.50.300 2 205 4.0E-71 T 12-10-2018 Alide_3720 f693847b504af41ac8fa8a15dc4f2686 356 Gene3D G3DSA:3.30.1220.10 241 354 3.7E-33 T 12-10-2018 IPR036627 CobW-like, C-terminal domain superfamily Alide_3720 f693847b504af41ac8fa8a15dc4f2686 356 SUPERFAMILY SSF90002 260 354 3.53E-26 T 12-10-2018 Alide_3720 f693847b504af41ac8fa8a15dc4f2686 356 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 260 354 3.6E-23 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Alide_3720 f693847b504af41ac8fa8a15dc4f2686 356 SUPERFAMILY SSF52540 5 205 7.47E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3720 f693847b504af41ac8fa8a15dc4f2686 356 SMART SM00833 260 354 5.6E-18 T 12-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Alide_4203 026a9c96e9896c1d97bf8a237d2b6106 151 Gene3D G3DSA:3.10.129.10 8 140 1.9E-33 T 12-10-2018 Alide_4203 026a9c96e9896c1d97bf8a237d2b6106 151 Pfam PF01575 MaoC like domain 20 106 1.5E-17 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_4203 026a9c96e9896c1d97bf8a237d2b6106 151 PRINTS PR01483 Fatty acid synthase signature 48 69 9.8E-5 T 12-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Alide_4203 026a9c96e9896c1d97bf8a237d2b6106 151 PRINTS PR01483 Fatty acid synthase signature 25 47 9.8E-5 T 12-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 Alide_4203 026a9c96e9896c1d97bf8a237d2b6106 151 SUPERFAMILY SSF54637 3 143 8.36E-32 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 298 1.1E-75 T 12-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 SMART SM01209 101 298 1.9E-134 T 12-10-2018 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 SUPERFAMILY SSF56059 102 327 8.49E-63 T 12-10-2018 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 SUPERFAMILY SSF52440 1 101 3.17E-35 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 SUPERFAMILY SSF51246 331 425 5.34E-31 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 Gene3D G3DSA:3.30.470.20 193 331 4.5E-59 T 12-10-2018 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 Gene3D G3DSA:3.40.50.20 1 93 3.3E-36 T 12-10-2018 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 425 43.165 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 2.7E-36 T 12-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 SMART SM01210 332 425 2.2E-51 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 333 423 6.0E-30 T 12-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 Gene3D G3DSA:3.90.600.10 332 428 3.1E-33 T 12-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 425 6.7E-169 T 12-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Alide_2150 e5daa338b3c1ea711180349dac9990ba 428 Gene3D G3DSA:3.30.1490.20 119 192 6.9E-25 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_0550 8110591ab5f04db07d104e5e3d9174ce 306 SUPERFAMILY SSF55120 118 304 8.48E-34 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_0550 8110591ab5f04db07d104e5e3d9174ce 306 SUPERFAMILY SSF55174 59 133 2.36E-16 T 12-10-2018 Alide_0550 8110591ab5f04db07d104e5e3d9174ce 306 Pfam PF01479 S4 domain 59 104 5.0E-9 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0550 8110591ab5f04db07d104e5e3d9174ce 306 SMART SM00363 59 117 5.0E-6 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0550 8110591ab5f04db07d104e5e3d9174ce 306 Pfam PF00849 RNA pseudouridylate synthase 120 270 1.1E-10 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_0550 8110591ab5f04db07d104e5e3d9174ce 306 Gene3D G3DSA:3.30.2350.10 114 305 2.6E-41 T 12-10-2018 Alide_0550 8110591ab5f04db07d104e5e3d9174ce 306 Gene3D G3DSA:3.10.290.10 55 110 1.0E-19 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Alide_0321 bef8f371035e2477f8e63794e40c8f76 251 SMART SM00345 25 83 1.3E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_0321 bef8f371035e2477f8e63794e40c8f76 251 Gene3D G3DSA:1.20.120.530 86 234 4.0E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_0321 bef8f371035e2477f8e63794e40c8f76 251 Pfam PF07729 FCD domain 93 218 7.4E-18 T 12-10-2018 IPR011711 GntR, C-terminal Alide_0321 bef8f371035e2477f8e63794e40c8f76 251 SMART SM00895 93 219 5.8E-10 T 12-10-2018 IPR011711 GntR, C-terminal Alide_0321 bef8f371035e2477f8e63794e40c8f76 251 SUPERFAMILY SSF48008 89 228 9.15E-19 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_0321 bef8f371035e2477f8e63794e40c8f76 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 9.7E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_0321 bef8f371035e2477f8e63794e40c8f76 251 SUPERFAMILY SSF46785 16 87 1.39E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0321 bef8f371035e2477f8e63794e40c8f76 251 Gene3D G3DSA:1.10.10.10 18 84 7.7E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3877 04b79b2e47a9c91f590c3212af045817 248 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 112 245 4.4E-37 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal Alide_3877 04b79b2e47a9c91f590c3212af045817 248 SMART SM00858 124 186 3.5E-7 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Alide_3877 04b79b2e47a9c91f590c3212af045817 248 Gene3D G3DSA:2.30.30.760 190 248 5.9E-20 T 12-10-2018 Alide_3877 04b79b2e47a9c91f590c3212af045817 248 Pfam PF13144 Chaperone for flagella basal body P-ring formation 52 245 1.4E-42 T 12-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal Alide_4223 fb002753c50c118c0988a77cff005412 358 SUPERFAMILY SSF50621 230 356 5.23E-42 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Alide_4223 fb002753c50c118c0988a77cff005412 358 TIGRFAM TIGR00492 alr: alanine racemase 5 356 1.2E-99 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 Gene3D G3DSA:2.40.37.10 10 354 6.9E-119 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Alide_4223 fb002753c50c118c0988a77cff005412 358 SMART SM01005 233 356 1.8E-58 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 Pfam PF00842 Alanine racemase, C-terminal domain 233 355 7.2E-37 T 12-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 Pfam PF01168 Alanine racemase, N-terminal domain 10 222 2.4E-67 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 SUPERFAMILY SSF51419 10 233 9.98E-65 T 12-10-2018 IPR029066 PLP-binding barrel Alide_4223 fb002753c50c118c0988a77cff005412 358 PRINTS PR00992 Alanine racemase signature 266 281 3.8E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 PRINTS PR00992 Alanine racemase signature 158 169 3.8E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 PRINTS PR00992 Alanine racemase signature 26 42 3.8E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 PRINTS PR00992 Alanine racemase signature 339 352 3.8E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 PRINTS PR00992 Alanine racemase signature 124 136 3.8E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 PRINTS PR00992 Alanine racemase signature 287 304 3.8E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 PRINTS PR00992 Alanine racemase signature 61 79 3.8E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 PRINTS PR00992 Alanine racemase signature 195 222 3.8E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 PRINTS PR00992 Alanine racemase signature 249 264 3.8E-62 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 Hamap MF_01201 Alanine racemase. 2 356 33.007 T 12-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 12-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_4223 fb002753c50c118c0988a77cff005412 358 Gene3D G3DSA:3.20.20.10 11 220 6.9E-119 T 12-10-2018 IPR029066 PLP-binding barrel Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 SUPERFAMILY SSF51735 4 248 2.72E-79 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 191 0.0087 T 12-10-2018 Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 Gene3D G3DSA:3.40.50.720 1 248 1.2E-78 T 12-10-2018 Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 3.8E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.8E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.8E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 4.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 4.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 4.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 4.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 4.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2373 90c98c19294b707d78304f6b23f6a6ca 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 246 9.2E-65 T 12-10-2018 Alide_2894 9a2c7a63b3a4d2ff3ec154babad2113b 195 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 10 188 4.6E-50 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Alide_2894 9a2c7a63b3a4d2ff3ec154babad2113b 195 Pfam PF01066 CDP-alcohol phosphatidyltransferase 11 79 1.1E-14 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Alide_2894 9a2c7a63b3a4d2ff3ec154babad2113b 195 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Alide_2894 9a2c7a63b3a4d2ff3ec154babad2113b 195 Gene3D G3DSA:1.20.120.1760 2 187 3.3E-12 T 12-10-2018 Alide_2894 9a2c7a63b3a4d2ff3ec154babad2113b 195 PIRSF PIRSF000847 6 195 3.8E-42 T 12-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Alide_4248 65a3cf46a764461cfe3dbc7c0ecc47b7 186 Pfam PF07152 YaeQ protein 1 181 1.8E-69 T 12-10-2018 IPR009822 YaeQ Alide_4248 65a3cf46a764461cfe3dbc7c0ecc47b7 186 SMART SM01322 1 184 2.3E-113 T 12-10-2018 IPR009822 YaeQ Alide_4248 65a3cf46a764461cfe3dbc7c0ecc47b7 186 PIRSF PIRSF011484 1 186 1.1E-59 T 12-10-2018 IPR009822 YaeQ Alide_4248 65a3cf46a764461cfe3dbc7c0ecc47b7 186 Gene3D G3DSA:3.10.640.10 1 186 2.2E-70 T 12-10-2018 IPR038590 YaeQ superfamily Alide_4248 65a3cf46a764461cfe3dbc7c0ecc47b7 186 SUPERFAMILY SSF52980 2 186 1.37E-63 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 Hamap MF_01347 ATP synthase subunit beta [atpB]. 3 467 56.607 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 Gene3D G3DSA:1.10.1140.10 352 469 6.5E-59 T 12-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 SMART SM00382 142 334 0.0063 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 SUPERFAMILY SSF47917 352 468 2.12E-54 T 12-10-2018 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 5 467 5.3E-248 T 12-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 340 349 - T 12-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 Gene3D G3DSA:3.40.50.300 76 351 3.5E-114 T 12-10-2018 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 8 73 3.8E-19 T 12-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 SUPERFAMILY SSF52540 77 355 1.03E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 349 9.8E-61 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 SUPERFAMILY SSF50615 4 75 9.16E-25 T 12-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_0439 235d8e3ce030a4cbbebbff2f8b675a31 469 Gene3D G3DSA:2.40.10.170 2 75 4.2E-30 T 12-10-2018 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 SUPERFAMILY SSF56645 6 231 9.56E-59 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 PIRSF PIRSF016578 7 383 8.8E-24 T 12-10-2018 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 127 139 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 Gene3D G3DSA:1.20.140.10 237 389 7.5E-50 T 12-10-2018 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 Gene3D G3DSA:1.10.540.10 3 123 5.0E-26 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 SUPERFAMILY SSF47203 230 380 1.35E-52 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 119 8.8E-19 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 215 1.2E-21 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 379 5.3E-47 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2325 ff2cc0ef3ef3b1bb15300ba3bfa37f33 389 Gene3D G3DSA:2.40.110.10 125 236 4.8E-31 T 12-10-2018 Alide_4378 661449f707bbf0d1f5f02324480b312d 471 Gene3D G3DSA:3.10.50.40 325 426 1.1E-76 T 12-10-2018 Alide_4378 661449f707bbf0d1f5f02324480b312d 471 SUPERFAMILY SSF54534 216 318 7.2E-23 T 12-10-2018 Alide_4378 661449f707bbf0d1f5f02324480b312d 471 SUPERFAMILY SSF54534 326 426 3.47E-31 T 12-10-2018 Alide_4378 661449f707bbf0d1f5f02324480b312d 471 Pfam PF00639 PPIC-type PPIASE domain 331 421 2.2E-23 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Alide_4378 661449f707bbf0d1f5f02324480b312d 471 Pfam PF00639 PPIC-type PPIASE domain 220 314 2.2E-17 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Alide_4378 661449f707bbf0d1f5f02324480b312d 471 SUPERFAMILY SSF109998 67 244 1.37E-39 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily Alide_4378 661449f707bbf0d1f5f02324480b312d 471 Gene3D G3DSA:1.10.4030.10 63 189 2.5E-31 T 12-10-2018 Alide_4378 661449f707bbf0d1f5f02324480b312d 471 Pfam PF09312 SurA N-terminal domain 67 183 3.6E-33 T 12-10-2018 IPR015391 SurA N-terminal Alide_4378 661449f707bbf0d1f5f02324480b312d 471 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 363 383 - T 12-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Alide_4378 661449f707bbf0d1f5f02324480b312d 471 Gene3D G3DSA:3.10.50.40 217 427 1.1E-76 T 12-10-2018 Alide_4378 661449f707bbf0d1f5f02324480b312d 471 Hamap MF_01183 Chaperone SurA [surA]. 14 469 32.109 T 12-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 Alide_1037 a7d39e4d519d5162532e1b1d6e7fe4e0 67 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 57 4.8E-18 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_1037 a7d39e4d519d5162532e1b1d6e7fe4e0 67 SMART SM01409 8 59 1.8E-14 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Alide_1037 a7d39e4d519d5162532e1b1d6e7fe4e0 67 SUPERFAMILY SSF63562 1 63 1.2E-19 T 12-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Alide_1037 a7d39e4d519d5162532e1b1d6e7fe4e0 67 Gene3D G3DSA:3.90.940.10 1 66 5.9E-21 T 12-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Alide_1037 a7d39e4d519d5162532e1b1d6e7fe4e0 67 Pfam PF01192 RNA polymerase Rpb6 8 57 3.6E-14 T 12-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Alide_1037 a7d39e4d519d5162532e1b1d6e7fe4e0 67 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 60 16.227 T 12-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0913 28dd37b8713833b16f1e34819c0eeb48 68 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 6 60 18.01 T 12-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 Alide_0913 28dd37b8713833b16f1e34819c0eeb48 68 Pfam PF03884 DNA gyrase inhibitor YacG 10 60 5.1E-25 T 12-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 Alide_0913 28dd37b8713833b16f1e34819c0eeb48 68 Gene3D G3DSA:3.30.50.10 5 66 1.9E-22 T 12-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 Alide_0913 28dd37b8713833b16f1e34819c0eeb48 68 SUPERFAMILY SSF57716 7 63 4.85E-20 T 12-10-2018 Alide_1433 b7bea927a03df5db58724e0b10976681 117 SMART SM00507 33 83 1.9E-6 T 12-10-2018 IPR003615 HNH nuclease Alide_1433 b7bea927a03df5db58724e0b10976681 117 Pfam PF01844 HNH endonuclease 45 86 1.4E-4 T 12-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 Alide_3119 eff3436f5f93c35e7f891b6c0176e9b0 510 Gene3D G3DSA:3.40.309.10 266 461 2.4E-134 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_3119 eff3436f5f93c35e7f891b6c0176e9b0 510 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 262 269 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_3119 eff3436f5f93c35e7f891b6c0176e9b0 510 Gene3D G3DSA:3.40.605.10 28 486 2.4E-134 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_3119 eff3436f5f93c35e7f891b6c0176e9b0 510 Pfam PF00171 Aldehyde dehydrogenase family 26 488 1.3E-121 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_3119 eff3436f5f93c35e7f891b6c0176e9b0 510 SUPERFAMILY SSF53720 23 497 3.14E-126 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_1354 0046145352839b9b80b6b623237424e0 223 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1354 0046145352839b9b80b6b623237424e0 223 SMART SM00382 32 218 1.7E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1354 0046145352839b9b80b6b623237424e0 223 SUPERFAMILY SSF52540 7 215 1.43E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1354 0046145352839b9b80b6b623237424e0 223 Gene3D G3DSA:3.40.50.300 2 221 1.3E-59 T 12-10-2018 Alide_1354 0046145352839b9b80b6b623237424e0 223 Pfam PF00005 ABC transporter 24 169 4.6E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 3.5E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 3.5E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.5E-5 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 Pfam PF00106 short chain dehydrogenase 7 204 1.1E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.2E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.2E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.2E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.2E-16 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 Gene3D G3DSA:3.40.50.720 1 255 4.3E-41 T 12-10-2018 Alide_2186 98a8c49a3ed78e37f4e2c10b5657d6f3 256 SUPERFAMILY SSF51735 1 244 3.53E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 40 301 1.3E-82 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 SUPERFAMILY SSF46626 221 299 4.73E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 Gene3D G3DSA:1.10.760.10 108 298 5.9E-66 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 Gene3D G3DSA:1.20.58.1490 5 98 1.0E-33 T 12-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 SUPERFAMILY SSF46626 60 215 4.36E-32 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 Gene3D G3DSA:1.10.760.10 186 275 5.9E-66 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 225 295 8.2E-12 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 130 206 2.4E-13 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 PIRSF PIRSF000006 5 302 3.1E-93 T 12-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 PRINTS PR00605 Class IC cytochrome C signature 141 152 6.0E-6 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 PRINTS PR00605 Class IC cytochrome C signature 273 295 6.0E-6 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Alide_3325 f510cbe617fe7f0b256fee2e5dfe26a5 306 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 41 88 6.7E-24 T 12-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal Alide_4340 8a520994251d051b5968df40aeba9807 364 SUPERFAMILY SSF51412 4 360 1.02E-41 T 12-10-2018 Alide_4340 8a520994251d051b5968df40aeba9807 364 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 214 234 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Alide_4340 8a520994251d051b5968df40aeba9807 364 Pfam PF03060 Nitronate monooxygenase 13 349 3.0E-46 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Alide_4340 8a520994251d051b5968df40aeba9807 364 Gene3D G3DSA:3.20.20.70 4 359 1.6E-81 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2572 85ba904a35f0b0aabd216bb4bcc8e941 445 Gene3D G3DSA:3.30.390.10 7 413 8.6E-168 T 12-10-2018 IPR029017 Enolase-like, N-terminal Alide_2572 85ba904a35f0b0aabd216bb4bcc8e941 445 SUPERFAMILY SSF51604 136 414 3.36E-76 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_2572 85ba904a35f0b0aabd216bb4bcc8e941 445 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 38 134 5.6E-5 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Alide_2572 85ba904a35f0b0aabd216bb4bcc8e941 445 Gene3D G3DSA:3.20.20.120 136 399 8.6E-168 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_2572 85ba904a35f0b0aabd216bb4bcc8e941 445 SUPERFAMILY SSF54826 4 134 3.54E-32 T 12-10-2018 Alide_2572 85ba904a35f0b0aabd216bb4bcc8e941 445 SMART SM00922 185 285 2.5E-14 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Alide_2572 85ba904a35f0b0aabd216bb4bcc8e941 445 Pfam PF13378 Enolase C-terminal domain-like 188 404 4.8E-34 T 12-10-2018 IPR029065 Enolase C-terminal domain-like Alide_0766 5307267d41a937760fb00aaefd658eb1 86 Pfam PF00550 Phosphopantetheine attachment site 24 77 6.8E-5 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain Alide_0766 5307267d41a937760fb00aaefd658eb1 86 Gene3D G3DSA:1.10.1200.10 1 82 5.8E-21 T 12-10-2018 IPR036736 ACP-like superfamily Alide_0766 5307267d41a937760fb00aaefd658eb1 86 SUPERFAMILY SSF47336 4 82 7.49E-11 T 12-10-2018 IPR036736 ACP-like superfamily Alide_3101 e2c8df92f67faf39fe64fe4c4e05b53e 440 Gene3D G3DSA:3.40.50.10180 41 266 9.3E-142 T 12-10-2018 IPR038614 Glycerate kinase, N-terminal domain superfamily Reactome: R-HSA-70350 Alide_3101 e2c8df92f67faf39fe64fe4c4e05b53e 440 SUPERFAMILY SSF82544 11 439 4.58E-149 T 12-10-2018 Alide_3101 e2c8df92f67faf39fe64fe4c4e05b53e 440 Pfam PF13660 Domain of unknown function (DUF4147) 17 243 2.8E-82 T 12-10-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 Alide_3101 e2c8df92f67faf39fe64fe4c4e05b53e 440 Gene3D G3DSA:3.40.1480.10 267 434 9.3E-142 T 12-10-2018 IPR037035 Glycerate kinase-like, C-terminal domain superfamily Alide_3101 e2c8df92f67faf39fe64fe4c4e05b53e 440 Pfam PF05161 MOFRL family 322 433 2.7E-34 T 12-10-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 Gene3D G3DSA:3.30.70.920 58 141 4.3E-22 T 12-10-2018 Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 Gene3D G3DSA:1.10.10.10 1 57 4.8E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 SMART SM00344 4 113 3.7E-42 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 SUPERFAMILY SSF46785 3 63 1.31E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 Pfam PF01037 Lrp/AsnC ligand binding domain 72 142 6.8E-18 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 5.0E-21 T 12-10-2018 Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 1.2E-17 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 1.2E-17 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 1.2E-17 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_4234 cacf669e0bc91be83b4b3784ccaa3f54 157 SUPERFAMILY SSF54909 64 153 1.61E-17 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_0897 591a0d4171308c8b3d4df44813e0630c 159 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 159 14.88 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 Alide_0897 591a0d4171308c8b3d4df44813e0630c 159 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 3 74 2.7E-17 T 12-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 Alide_0897 591a0d4171308c8b3d4df44813e0630c 159 Pfam PF02416 mttA/Hcf106 family 4 45 3.4E-7 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 Alide_0897 591a0d4171308c8b3d4df44813e0630c 159 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 3.3E-12 T 12-10-2018 Alide_0897 591a0d4171308c8b3d4df44813e0630c 159 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 3.3E-12 T 12-10-2018 Alide_0897 591a0d4171308c8b3d4df44813e0630c 159 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 3.3E-12 T 12-10-2018 Alide_3320 7d877c119b4312818d141cde1f2eaec5 460 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 5 460 1.1E-174 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 Alide_3320 7d877c119b4312818d141cde1f2eaec5 460 Gene3D G3DSA:3.80.30.20 2 366 2.6E-122 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Alide_3320 7d877c119b4312818d141cde1f2eaec5 460 Gene3D G3DSA:1.10.10.920 367 460 2.6E-32 T 12-10-2018 Alide_3320 7d877c119b4312818d141cde1f2eaec5 460 PIRSF PIRSF000167 2 457 1.1E-163 T 12-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 Alide_3320 7d877c119b4312818d141cde1f2eaec5 460 Pfam PF06969 HemN C-terminal domain 366 434 5.5E-8 T 12-10-2018 IPR010723 HemN, C-terminal Alide_3320 7d877c119b4312818d141cde1f2eaec5 460 SUPERFAMILY SSF102114 2 447 6.41E-133 T 12-10-2018 Alide_3320 7d877c119b4312818d141cde1f2eaec5 460 SMART SM00729 54 274 1.0E-48 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Alide_3320 7d877c119b4312818d141cde1f2eaec5 460 Pfam PF04055 Radical SAM superfamily 59 230 1.8E-21 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_1926 3f81b6787407b3ca42e94f1b909b5e8a 151 Pfam PF00571 CBS domain 15 60 5.0E-8 T 12-10-2018 IPR000644 CBS domain Alide_1926 3f81b6787407b3ca42e94f1b909b5e8a 151 Pfam PF00571 CBS domain 71 125 2.7E-6 T 12-10-2018 IPR000644 CBS domain Alide_1926 3f81b6787407b3ca42e94f1b909b5e8a 151 SMART SM00116 78 125 11.0 T 12-10-2018 IPR000644 CBS domain Alide_1926 3f81b6787407b3ca42e94f1b909b5e8a 151 SMART SM00116 13 60 3.8E-6 T 12-10-2018 IPR000644 CBS domain Alide_1926 3f81b6787407b3ca42e94f1b909b5e8a 151 Gene3D G3DSA:3.10.580.10 1 141 1.9E-30 T 12-10-2018 Alide_1926 3f81b6787407b3ca42e94f1b909b5e8a 151 SUPERFAMILY SSF54631 1 142 2.4E-26 T 12-10-2018 Alide_0853 e4baa0a8700b3c32ecf86bad675471e4 236 Gene3D G3DSA:3.30.70.1290 1 158 1.4E-41 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Alide_0853 e4baa0a8700b3c32ecf86bad675471e4 236 SMART SM01321 9 124 1.1E-44 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Alide_0853 e4baa0a8700b3c32ecf86bad675471e4 236 SUPERFAMILY SSF143422 3 127 1.28E-32 T 12-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Alide_0853 e4baa0a8700b3c32ecf86bad675471e4 236 Pfam PF01797 Transposase IS200 like 13 122 1.5E-15 T 12-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Alide_3135 eed978496b045c3d6098bce86de89ad4 494 Gene3D G3DSA:1.20.5.570 462 494 3.2E-13 T 12-10-2018 Alide_3135 eed978496b045c3d6098bce86de89ad4 494 SUPERFAMILY SSF50475 3 329 2.2E-114 T 12-10-2018 Alide_3135 eed978496b045c3d6098bce86de89ad4 494 Gene3D G3DSA:3.40.1670.10 344 461 1.1E-48 T 12-10-2018 Alide_3135 eed978496b045c3d6098bce86de89ad4 494 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 438 7.3E-164 T 12-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Alide_3135 eed978496b045c3d6098bce86de89ad4 494 SUPERFAMILY SSF143968 330 493 2.48E-64 T 12-10-2018 Alide_3135 eed978496b045c3d6098bce86de89ad4 494 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 462 3.5E-154 T 12-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Alide_4488 a406e24eb18e8e6acbbdf5f7d6340e29 143 Gene3D G3DSA:3.30.1330.60 18 140 7.0E-15 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_4488 a406e24eb18e8e6acbbdf5f7d6340e29 143 SUPERFAMILY SSF103088 37 137 1.05E-16 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_4488 a406e24eb18e8e6acbbdf5f7d6340e29 143 Pfam PF00691 OmpA family 52 130 1.2E-10 T 12-10-2018 IPR006665 OmpA-like domain Alide_2509 e46c2b1c7b0f339f11ee7c5df51d75d8 350 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 4.2E-22 T 12-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Alide_2509 e46c2b1c7b0f339f11ee7c5df51d75d8 350 SUPERFAMILY SSF46589 16 99 1.1E-18 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Alide_2509 e46c2b1c7b0f339f11ee7c5df51d75d8 350 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 349 4.7E-91 T 12-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Alide_2509 e46c2b1c7b0f339f11ee7c5df51d75d8 350 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 349 44.85 T 12-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 Alide_2509 e46c2b1c7b0f339f11ee7c5df51d75d8 350 Gene3D G3DSA:3.30.930.10 7 350 7.8E-111 T 12-10-2018 Alide_2509 e46c2b1c7b0f339f11ee7c5df51d75d8 350 Pfam PF01409 tRNA synthetases class II core domain (F) 92 349 6.3E-89 T 12-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 Alide_2509 e46c2b1c7b0f339f11ee7c5df51d75d8 350 SUPERFAMILY SSF55681 92 349 2.74E-70 T 12-10-2018 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 PRINTS PR00607 Class IE cytochrome C signature 221 231 2.4E-12 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 PRINTS PR00607 Class IE cytochrome C signature 249 261 2.4E-12 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 PRINTS PR00607 Class IE cytochrome C signature 263 274 2.4E-12 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 PRINTS PR00607 Class IE cytochrome C signature 210 221 2.4E-12 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 77 150 1.4E-15 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 201 273 2.6E-18 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 Gene3D G3DSA:1.10.760.10 71 154 6.9E-27 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 Gene3D G3DSA:1.10.760.10 190 278 7.1E-31 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 SUPERFAMILY SSF46626 77 152 5.49E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0450 dc8b9ad1f96ccf653a33d5773d8d94d8 278 SUPERFAMILY SSF46626 201 275 2.25E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2168 39936aecf0a523a43c6950494b5007c9 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 64 2.8E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2168 39936aecf0a523a43c6950494b5007c9 313 SUPERFAMILY SSF53850 91 298 1.9E-40 T 12-10-2018 Alide_2168 39936aecf0a523a43c6950494b5007c9 313 SUPERFAMILY SSF46785 1 84 8.71E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2168 39936aecf0a523a43c6950494b5007c9 313 Gene3D G3DSA:3.40.190.10 91 303 3.4E-83 T 12-10-2018 Alide_2168 39936aecf0a523a43c6950494b5007c9 313 Pfam PF03466 LysR substrate binding domain 89 295 6.7E-42 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2168 39936aecf0a523a43c6950494b5007c9 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2168 39936aecf0a523a43c6950494b5007c9 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2168 39936aecf0a523a43c6950494b5007c9 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2168 39936aecf0a523a43c6950494b5007c9 313 Gene3D G3DSA:1.10.10.10 1 86 9.2E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2168 39936aecf0a523a43c6950494b5007c9 313 Gene3D G3DSA:3.40.190.10 167 267 3.4E-83 T 12-10-2018 Alide_2629 30bb21fa4e9007c5e7f602b26b0da6a8 261 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 7 253 1.0E-84 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Alide_2629 30bb21fa4e9007c5e7f602b26b0da6a8 261 Pfam PF02348 Cytidylyltransferase 9 233 1.4E-50 T 12-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Alide_2629 30bb21fa4e9007c5e7f602b26b0da6a8 261 Gene3D G3DSA:3.90.550.10 3 261 6.2E-90 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_2629 30bb21fa4e9007c5e7f602b26b0da6a8 261 SUPERFAMILY SSF53448 7 260 1.48E-57 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_2629 30bb21fa4e9007c5e7f602b26b0da6a8 261 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 5 260 41.229 T 12-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Alide_1996 b95decc5ac8c65898a7ace616efa2040 443 Gene3D G3DSA:1.20.1250.20 32 441 9.4E-36 T 12-10-2018 Alide_1996 b95decc5ac8c65898a7ace616efa2040 443 SUPERFAMILY SSF103473 35 433 3.79E-35 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1996 b95decc5ac8c65898a7ace616efa2040 443 Pfam PF07690 Major Facilitator Superfamily 135 389 1.5E-15 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_1996 b95decc5ac8c65898a7ace616efa2040 443 ProSitePatterns PS00216 Sugar transport proteins signature 1. 314 331 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_2913 3d82b3f68cd6b546eb4e1adbfceddd41 492 Gene3D G3DSA:3.40.605.10 18 484 1.2E-169 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_2913 3d82b3f68cd6b546eb4e1adbfceddd41 492 SUPERFAMILY SSF53720 12 490 3.4E-161 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_2913 3d82b3f68cd6b546eb4e1adbfceddd41 492 Gene3D G3DSA:3.40.309.10 265 457 1.2E-169 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_2913 3d82b3f68cd6b546eb4e1adbfceddd41 492 Pfam PF00171 Aldehyde dehydrogenase family 22 486 3.4E-163 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_2913 3d82b3f68cd6b546eb4e1adbfceddd41 492 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 288 299 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_2913 3d82b3f68cd6b546eb4e1adbfceddd41 492 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_2011 5eb38f2d08ed5962061eba154c11e13b 121 Gene3D G3DSA:3.30.1330.40 1 119 6.3E-35 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Alide_2011 5eb38f2d08ed5962061eba154c11e13b 121 Pfam PF01042 Endoribonuclease L-PSP 4 115 5.4E-21 T 12-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Alide_2011 5eb38f2d08ed5962061eba154c11e13b 121 SUPERFAMILY SSF55298 3 117 2.04E-27 T 12-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 SUPERFAMILY SSF54752 279 336 2.35E-22 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 SMART SM00382 68 239 1.1E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 SUPERFAMILY SSF52540 14 278 3.14E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 Pfam PF00154 recA bacterial DNA recombination protein 17 279 1.9E-144 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 Gene3D G3DSA:3.30.250.10 280 355 1.2E-28 T 12-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 PRINTS PR00142 RecA protein signature 221 249 1.2E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 PRINTS PR00142 RecA protein signature 308 325 1.2E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 PRINTS PR00142 RecA protein signature 176 205 1.2E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 PRINTS PR00142 RecA protein signature 104 133 1.2E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 PRINTS PR00142 RecA protein signature 254 283 1.2E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 PRINTS PR00142 RecA protein signature 138 167 1.2E-85 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 ProSitePatterns PS00321 recA signature. 224 232 - T 12-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 14 335 3.1E-173 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 Hamap MF_00268 Protein RecA [recA]. 15 340 52.301 T 12-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Alide_4227 e7e78b962c4ee6dc3341a493f41d2349 369 Gene3D G3DSA:3.40.50.300 38 279 1.8E-85 T 12-10-2018 Alide_2405 0620764fd0ad166766235a59768a1ad0 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 320 1.6E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2405 0620764fd0ad166766235a59768a1ad0 324 SUPERFAMILY SSF53850 113 286 3.62E-14 T 12-10-2018 Alide_2405 0620764fd0ad166766235a59768a1ad0 324 Gene3D G3DSA:3.40.190.150 31 313 7.6E-106 T 12-10-2018 Alide_2405 0620764fd0ad166766235a59768a1ad0 324 PIRSF PIRSF017082 1 323 5.1E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2405 0620764fd0ad166766235a59768a1ad0 324 Gene3D G3DSA:3.40.190.10 126 249 7.6E-106 T 12-10-2018 Alide_3047 1a2f812df1d51ab197841895c0e30a91 273 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 14 248 1.4E-62 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Alide_3047 1a2f812df1d51ab197841895c0e30a91 273 SUPERFAMILY SSF64167 14 263 7.19E-82 T 12-10-2018 Alide_3047 1a2f812df1d51ab197841895c0e30a91 273 Pfam PF01975 Survival protein SurE 16 197 2.5E-56 T 12-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Alide_3047 1a2f812df1d51ab197841895c0e30a91 273 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 14 265 37.09 T 12-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Alide_3047 1a2f812df1d51ab197841895c0e30a91 273 Gene3D G3DSA:3.40.1210.10 5 263 2.0E-87 T 12-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Alide_0983 10a9667b950b4f36caaf33ba40b3fbf4 288 SUPERFAMILY SSF55060 164 268 4.03E-21 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Alide_0983 10a9667b950b4f36caaf33ba40b3fbf4 288 PIRSF PIRSF010376 3 283 1.5E-77 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Alide_0983 10a9667b950b4f36caaf33ba40b3fbf4 288 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 5 269 29.242 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Alide_0983 10a9667b950b4f36caaf33ba40b3fbf4 288 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 6 253 2.8E-56 T 12-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Alide_0983 10a9667b950b4f36caaf33ba40b3fbf4 288 Gene3D G3DSA:3.30.70.890 164 281 5.9E-21 T 12-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Alide_0983 10a9667b950b4f36caaf33ba40b3fbf4 288 Gene3D G3DSA:3.30.230.10 2 158 3.6E-55 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_0983 10a9667b950b4f36caaf33ba40b3fbf4 288 Pfam PF00288 GHMP kinases N terminal domain 86 143 2.7E-9 T 12-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 Alide_0983 10a9667b950b4f36caaf33ba40b3fbf4 288 SUPERFAMILY SSF54211 7 157 6.15E-42 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0983 10a9667b950b4f36caaf33ba40b3fbf4 288 Pfam PF08544 GHMP kinases C terminal 210 251 3.0E-6 T 12-10-2018 IPR013750 GHMP kinase, C-terminal domain Alide_3178 979fa84d8f977122dcada0806e3464d4 332 Pfam PF17188 MucB/RseB C-terminal domain 227 328 1.9E-22 T 12-10-2018 IPR033436 MucB/RseB, C-terminal Alide_3178 979fa84d8f977122dcada0806e3464d4 332 PIRSF PIRSF005427 1 332 1.2E-73 T 12-10-2018 IPR005588 MucB/RseB Alide_3178 979fa84d8f977122dcada0806e3464d4 332 Pfam PF03888 MucB/RseB N-terminal domain 32 207 5.2E-53 T 12-10-2018 IPR033434 MucB/RseB, N-terminal Alide_3178 979fa84d8f977122dcada0806e3464d4 332 Gene3D G3DSA:3.30.200.100 229 331 4.7E-13 T 12-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily Alide_3178 979fa84d8f977122dcada0806e3464d4 332 Gene3D G3DSA:2.50.20.10 31 209 2.8E-50 T 12-10-2018 Alide_2958 78fd826372c1a227ccb1d7d50fda6094 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 78 96 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_2958 78fd826372c1a227ccb1d7d50fda6094 393 PIRSF PIRSF000429 1 391 7.3E-58 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2958 78fd826372c1a227ccb1d7d50fda6094 393 Pfam PF02803 Thiolase, C-terminal domain 271 366 2.0E-9 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_2958 78fd826372c1a227ccb1d7d50fda6094 393 SUPERFAMILY SSF53901 20 389 1.74E-46 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2958 78fd826372c1a227ccb1d7d50fda6094 393 Gene3D G3DSA:3.40.47.10 6 392 2.3E-112 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2958 78fd826372c1a227ccb1d7d50fda6094 393 ProSitePatterns PS00737 Thiolases signature 2. 332 348 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_2958 78fd826372c1a227ccb1d7d50fda6094 393 Pfam PF00108 Thiolase, N-terminal domain 14 197 5.0E-13 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_1095 d21a98ecf7d329ac185955b94a2b3161 408 SUPERFAMILY SSF102645 187 402 7.72E-69 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Alide_1095 d21a98ecf7d329ac185955b94a2b3161 408 Pfam PF02441 Flavoprotein 7 180 1.1E-37 T 12-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Alide_1095 d21a98ecf7d329ac185955b94a2b3161 408 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 6 398 3.0E-120 T 12-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 Alide_1095 d21a98ecf7d329ac185955b94a2b3161 408 Gene3D G3DSA:3.40.50.10300 188 405 2.5E-68 T 12-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Alide_1095 d21a98ecf7d329ac185955b94a2b3161 408 SUPERFAMILY SSF52507 2 183 3.79E-54 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Alide_1095 d21a98ecf7d329ac185955b94a2b3161 408 Gene3D G3DSA:3.40.50.1950 1 187 1.3E-52 T 12-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Alide_1095 d21a98ecf7d329ac185955b94a2b3161 408 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 189 373 2.3E-64 T 12-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Alide_2774 84720a93c1920f14343d9a73bf27a21f 251 SUPERFAMILY SSF53850 8 245 5.98E-73 T 12-10-2018 Alide_2774 84720a93c1920f14343d9a73bf27a21f 251 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 51 64 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site Alide_2774 84720a93c1920f14343d9a73bf27a21f 251 SMART SM00079 29 246 3.3E-5 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Alide_2774 84720a93c1920f14343d9a73bf27a21f 251 SMART SM00062 29 247 1.9E-72 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_2774 84720a93c1920f14343d9a73bf27a21f 251 Gene3D G3DSA:3.40.190.10 113 206 8.4E-74 T 12-10-2018 Alide_2774 84720a93c1920f14343d9a73bf27a21f 251 Gene3D G3DSA:3.40.190.10 32 244 8.4E-74 T 12-10-2018 Alide_2774 84720a93c1920f14343d9a73bf27a21f 251 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 245 1.2E-68 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_2291 de33bf52d1b13c06913f6a316b909f7c 153 SUPERFAMILY SSF54593 1 145 4.48E-16 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2291 de33bf52d1b13c06913f6a316b909f7c 153 Gene3D G3DSA:3.10.180.10 6 146 1.5E-19 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2291 de33bf52d1b13c06913f6a316b909f7c 153 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 121 2.1E-21 T 12-10-2018 Alide_2274 f574b25963663fe2cd75aacdf1cc3037 227 Pfam PF14697 4Fe-4S dicluster domain 90 144 1.5E-16 T 12-10-2018 Alide_2274 f574b25963663fe2cd75aacdf1cc3037 227 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 4 166 1.4E-58 T 12-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Alide_2274 f574b25963663fe2cd75aacdf1cc3037 227 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 127 138 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_2274 f574b25963663fe2cd75aacdf1cc3037 227 Gene3D G3DSA:1.10.15.40 19 64 1.8E-10 T 12-10-2018 Alide_2274 f574b25963663fe2cd75aacdf1cc3037 227 SUPERFAMILY SSF54862 20 147 2.22E-25 T 12-10-2018 Alide_2274 f574b25963663fe2cd75aacdf1cc3037 227 Gene3D G3DSA:3.30.70.20 65 158 2.7E-20 T 12-10-2018 Alide_2274 f574b25963663fe2cd75aacdf1cc3037 227 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 97 108 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_2274 f574b25963663fe2cd75aacdf1cc3037 227 Pfam PF04060 Putative Fe-S cluster 25 57 2.2E-14 T 12-10-2018 IPR007202 4Fe-4S domain GO:0051536 Alide_0553 15c29a0cc775bcb02a3a78ec4b50cb64 326 Gene3D G3DSA:3.40.190.150 28 307 2.1E-98 T 12-10-2018 Alide_0553 15c29a0cc775bcb02a3a78ec4b50cb64 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 305 6.9E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0553 15c29a0cc775bcb02a3a78ec4b50cb64 326 SUPERFAMILY SSF53850 111 292 1.45E-9 T 12-10-2018 Alide_0553 15c29a0cc775bcb02a3a78ec4b50cb64 326 PIRSF PIRSF017082 1 325 6.6E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0553 15c29a0cc775bcb02a3a78ec4b50cb64 326 Gene3D G3DSA:3.40.190.10 126 251 2.1E-98 T 12-10-2018 Alide_1097 24a8c261cebb9b25d0910837982be9ed 148 SUPERFAMILY SSF51283 4 147 1.7E-49 T 12-10-2018 IPR036157 dUTPase-like superfamily Alide_1097 24a8c261cebb9b25d0910837982be9ed 148 Gene3D G3DSA:2.70.40.10 1 148 6.0E-49 T 12-10-2018 IPR036157 dUTPase-like superfamily Alide_1097 24a8c261cebb9b25d0910837982be9ed 148 TIGRFAM TIGR00576 dut: dUTP diphosphatase 13 147 6.4E-45 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Alide_1097 24a8c261cebb9b25d0910837982be9ed 148 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 5 147 32.309 T 12-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Alide_1097 24a8c261cebb9b25d0910837982be9ed 148 Pfam PF00692 dUTPase 15 146 2.2E-35 T 12-10-2018 IPR029054 dUTPase-like Alide_4489 79b64f0b2288f2835ea6217c2bd72745 191 SUPERFAMILY SSF46689 139 182 3.72E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4489 79b64f0b2288f2835ea6217c2bd72745 191 SUPERFAMILY SSF53041 1 136 2.09E-46 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Alide_4489 79b64f0b2288f2835ea6217c2bd72745 191 Gene3D G3DSA:3.40.50.1390 2 126 9.0E-50 T 12-10-2018 Alide_4489 79b64f0b2288f2835ea6217c2bd72745 191 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Alide_4489 79b64f0b2288f2835ea6217c2bd72745 191 SMART SM00857 3 137 1.9E-63 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_4489 79b64f0b2288f2835ea6217c2bd72745 191 ProSitePatterns PS00398 Site-specific recombinases signature 2. 56 68 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Alide_4489 79b64f0b2288f2835ea6217c2bd72745 191 Pfam PF00239 Resolvase, N terminal domain 4 137 1.2E-46 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_2337 faa16e3295a525cdc951e98ca7f09618 237 SUPERFAMILY SSF55681 22 227 1.91E-26 T 12-10-2018 Alide_2337 faa16e3295a525cdc951e98ca7f09618 237 Gene3D G3DSA:3.30.930.10 12 235 1.1E-27 T 12-10-2018 Alide_2194 d0f8ed55cc197f529446749ab5cabf7c 207 SUPERFAMILY SSF55144 21 200 5.06E-22 T 12-10-2018 IPR009097 Cyclic phosphodiesterase Alide_2194 d0f8ed55cc197f529446749ab5cabf7c 207 Pfam PF13563 2'-5' RNA ligase superfamily 40 183 2.7E-8 T 12-10-2018 Alide_2194 d0f8ed55cc197f529446749ab5cabf7c 207 Gene3D G3DSA:3.90.1140.10 21 204 7.8E-27 T 12-10-2018 Alide_3278 74800a88fe543c7c7fc2e95ae6308a30 310 SUPERFAMILY SSF52467 189 309 1.04E-42 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_3278 74800a88fe543c7c7fc2e95ae6308a30 310 Gene3D G3DSA:3.40.50.1220 184 310 5.0E-54 T 12-10-2018 Alide_3278 74800a88fe543c7c7fc2e95ae6308a30 310 SUPERFAMILY SSF52402 3 186 1.12E-53 T 12-10-2018 Alide_3278 74800a88fe543c7c7fc2e95ae6308a30 310 PIRSF PIRSF000089 1 310 7.4E-101 T 12-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Alide_3278 74800a88fe543c7c7fc2e95ae6308a30 310 Pfam PF01012 Electron transfer flavoprotein domain 4 169 4.3E-36 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_3278 74800a88fe543c7c7fc2e95ae6308a30 310 SMART SM00893 3 182 1.3E-53 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_3278 74800a88fe543c7c7fc2e95ae6308a30 310 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 12-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 Alide_3278 74800a88fe543c7c7fc2e95ae6308a30 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 7.8E-34 T 12-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Alide_3278 74800a88fe543c7c7fc2e95ae6308a30 310 Gene3D G3DSA:3.40.50.620 3 183 2.9E-52 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3865 756df1c171461d74f451c6986885c075 429 Pfam PF03737 Aldolase/RraA 231 386 3.7E-26 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_3865 756df1c171461d74f451c6986885c075 429 SUPERFAMILY SSF89562 228 394 7.46E-28 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_3865 756df1c171461d74f451c6986885c075 429 Pfam PF02348 Cytidylyltransferase 5 127 2.1E-12 T 12-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Alide_3865 756df1c171461d74f451c6986885c075 429 Gene3D G3DSA:3.90.550.10 1 208 1.3E-35 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3865 756df1c171461d74f451c6986885c075 429 SUPERFAMILY SSF53448 1 210 9.78E-31 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3865 756df1c171461d74f451c6986885c075 429 Gene3D G3DSA:3.50.30.100 209 407 2.1E-38 T 12-10-2018 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 Pfam PF00330 Aconitase family (aconitate hydratase) 30 416 1.5E-79 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 5 422 8.5E-127 T 12-10-2018 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 Gene3D G3DSA:3.30.499.20 5 274 2.5E-87 T 12-10-2018 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 Gene3D G3DSA:3.30.499.10 277 424 1.3E-48 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 SUPERFAMILY SSF53732 3 425 1.31E-120 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 PRINTS PR00415 Aconitase family signature 357 370 7.8E-23 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 PRINTS PR00415 Aconitase family signature 113 126 7.8E-23 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 PRINTS PR00415 Aconitase family signature 102 110 7.8E-23 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 PRINTS PR00415 Aconitase family signature 127 142 7.8E-23 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 PRINTS PR00415 Aconitase family signature 189 202 7.8E-23 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 PRINTS PR00415 Aconitase family signature 300 311 7.8E-23 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3369 97718de7b4c6e8bdab50f010b624b6bf 426 PRINTS PR00415 Aconitase family signature 203 216 7.8E-23 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_0276 472a45100b997543f42e2e42877b1425 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 161 2.9E-34 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Alide_0276 472a45100b997543f42e2e42877b1425 296 Gene3D G3DSA:3.40.50.720 1 162 1.5E-44 T 12-10-2018 Alide_0276 472a45100b997543f42e2e42877b1425 296 SUPERFAMILY SSF48179 163 290 4.87E-30 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_0276 472a45100b997543f42e2e42877b1425 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 282 1.8E-28 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Alide_0276 472a45100b997543f42e2e42877b1425 296 PIRSF PIRSF000103 1 292 3.0E-68 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_0276 472a45100b997543f42e2e42877b1425 296 SUPERFAMILY SSF51735 1 161 4.42E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0276 472a45100b997543f42e2e42877b1425 296 Gene3D G3DSA:1.10.1040.10 164 292 6.2E-32 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_2330 ec3b5ab07e0056fa04edb064b1e2580b 322 SUPERFAMILY SSF53822 34 283 1.77E-21 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2330 ec3b5ab07e0056fa04edb064b1e2580b 322 Gene3D G3DSA:3.40.50.2300 143 314 2.4E-92 T 12-10-2018 Alide_2330 ec3b5ab07e0056fa04edb064b1e2580b 322 Pfam PF04392 ABC transporter substrate binding protein 29 320 4.1E-112 T 12-10-2018 IPR007487 ABC transporter, substrate-binding protein Alide_2330 ec3b5ab07e0056fa04edb064b1e2580b 322 Gene3D G3DSA:3.40.50.2300 47 292 2.4E-92 T 12-10-2018 Alide_0022 442ce42824c2da25a1b445d33c1baabe 323 Gene3D G3DSA:3.40.190.10 128 249 2.4E-86 T 12-10-2018 Alide_0022 442ce42824c2da25a1b445d33c1baabe 323 SUPERFAMILY SSF53850 111 291 2.41E-14 T 12-10-2018 Alide_0022 442ce42824c2da25a1b445d33c1baabe 323 PIRSF PIRSF017082 1 323 5.8E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0022 442ce42824c2da25a1b445d33c1baabe 323 Gene3D G3DSA:3.40.190.150 32 305 2.4E-86 T 12-10-2018 Alide_0022 442ce42824c2da25a1b445d33c1baabe 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 321 8.0E-101 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3973 f3411d1abc39a0e670e927bf6bf93267 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.225 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Alide_3973 f3411d1abc39a0e670e927bf6bf93267 122 SUPERFAMILY SSF50193 1 122 1.44E-49 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Alide_3973 f3411d1abc39a0e670e927bf6bf93267 122 Gene3D G3DSA:2.40.150.20 1 122 1.4E-51 T 12-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Alide_3973 f3411d1abc39a0e670e927bf6bf93267 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 12-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3973 f3411d1abc39a0e670e927bf6bf93267 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 8.6E-53 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Alide_3973 f3411d1abc39a0e670e927bf6bf93267 122 SMART SM01374 1 122 8.8E-82 T 12-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Alide_3973 f3411d1abc39a0e670e927bf6bf93267 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.9E-55 T 12-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 Alide_3085 3068e9b406f25b43be02c8a2dd7aaa01 287 Pfam PF04228 Putative neutral zinc metallopeptidase 1 282 3.1E-118 T 12-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative Alide_3085 3068e9b406f25b43be02c8a2dd7aaa01 287 SUPERFAMILY SSF55486 88 226 1.82E-5 T 12-10-2018 Alide_3269 0d4c505a789e6717479d0ce4916bc803 476 TIGRFAM TIGR00260 thrC: threonine synthase 72 434 3.6E-69 T 12-10-2018 IPR004450 Threonine synthase-like Alide_3269 0d4c505a789e6717479d0ce4916bc803 476 Pfam PF14821 Threonine synthase N terminus 2 83 7.0E-27 T 12-10-2018 IPR029144 Threonine synthase, N-terminal Alide_3269 0d4c505a789e6717479d0ce4916bc803 476 Gene3D G3DSA:3.40.50.1100 102 443 8.0E-137 T 12-10-2018 Alide_3269 0d4c505a789e6717479d0ce4916bc803 476 SUPERFAMILY SSF53686 1 474 7.97E-149 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_3269 0d4c505a789e6717479d0ce4916bc803 476 Gene3D G3DSA:3.90.1380.10 1 94 2.2E-28 T 12-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily Alide_3269 0d4c505a789e6717479d0ce4916bc803 476 Gene3D G3DSA:3.40.50.1100 113 456 8.0E-137 T 12-10-2018 Alide_3269 0d4c505a789e6717479d0ce4916bc803 476 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 98 337 6.9E-13 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_3931 dfdecb952bdd719d05e4176f992e996c 282 SUPERFAMILY SSF56529 60 279 1.44E-75 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_3931 dfdecb952bdd719d05e4176f992e996c 282 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 277 3.4E-62 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Alide_3931 dfdecb952bdd719d05e4176f992e996c 282 Gene3D G3DSA:3.90.850.10 67 282 4.9E-76 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_1094 1eba67cf80858a899cebcd31315276d3 549 Gene3D G3DSA:3.40.50.880 290 549 3.4E-99 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_1094 1eba67cf80858a899cebcd31315276d3 549 SUPERFAMILY SSF52540 1 272 1.89E-119 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1094 1eba67cf80858a899cebcd31315276d3 549 TIGRFAM TIGR00337 PyrG: CTP synthase 1 541 7.3E-234 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Alide_1094 1eba67cf80858a899cebcd31315276d3 549 Pfam PF06418 CTP synthase N-terminus 3 270 6.9E-124 T 12-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Alide_1094 1eba67cf80858a899cebcd31315276d3 549 SUPERFAMILY SSF52317 293 548 2.22E-80 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_1094 1eba67cf80858a899cebcd31315276d3 549 Pfam PF00117 Glutamine amidotransferase class-I 305 541 2.2E-53 T 12-10-2018 IPR017926 Glutamine amidotransferase Alide_1094 1eba67cf80858a899cebcd31315276d3 549 Hamap MF_01227 CTP synthase [pyrG]. 2 546 50.435 T 12-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Alide_1094 1eba67cf80858a899cebcd31315276d3 549 Gene3D G3DSA:3.40.50.300 1 289 4.2E-128 T 12-10-2018 Alide_0651 afec97739e911a91585caf777be739c5 160 Gene3D G3DSA:3.30.700.10 15 154 2.1E-8 T 12-10-2018 Alide_0651 afec97739e911a91585caf777be739c5 160 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 34 1.3E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0651 afec97739e911a91585caf777be739c5 160 SUPERFAMILY SSF54523 15 126 2.98E-14 T 12-10-2018 Alide_0651 afec97739e911a91585caf777be739c5 160 Pfam PF07963 Prokaryotic N-terminal methylation motif 11 34 5.2E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0651 afec97739e911a91585caf777be739c5 160 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 13 33 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0904 98e0ab7deec6e631dab2e492253fdbd6 473 Pfam PF00033 Cytochrome b/b6/petB 40 227 2.3E-67 T 12-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Alide_0904 98e0ab7deec6e631dab2e492253fdbd6 473 PIRSF PIRSF038885 13 349 2.3E-131 T 12-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 Alide_0904 98e0ab7deec6e631dab2e492253fdbd6 473 PIRSF PIRSF038885 360 473 7.3E-23 T 12-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 Alide_0904 98e0ab7deec6e631dab2e492253fdbd6 473 SUPERFAMILY SSF81648 300 328 1.35E-9 T 12-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Alide_0904 98e0ab7deec6e631dab2e492253fdbd6 473 SUPERFAMILY SSF81342 36 299 3.3E-95 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_0904 98e0ab7deec6e631dab2e492253fdbd6 473 Gene3D G3DSA:1.20.810.10 10 364 2.7E-128 T 12-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 Alide_0904 98e0ab7deec6e631dab2e492253fdbd6 473 Gene3D G3DSA:1.20.810.10 365 460 2.4E-17 T 12-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 Alide_0904 98e0ab7deec6e631dab2e492253fdbd6 473 SUPERFAMILY SSF81648 365 459 1.31E-17 T 12-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Alide_0904 98e0ab7deec6e631dab2e492253fdbd6 473 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 297 446 5.0E-41 T 12-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Alide_3742 e09217706eb60d291643e198d5964ff2 289 SUPERFAMILY SSF51621 1 231 4.19E-56 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_3742 e09217706eb60d291643e198d5964ff2 289 PIRSF PIRSF015582 1 289 3.4E-74 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like Alide_3742 e09217706eb60d291643e198d5964ff2 289 Gene3D G3DSA:3.20.20.60 1 286 9.1E-84 T 12-10-2018 Alide_3742 e09217706eb60d291643e198d5964ff2 289 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 2 221 1.3E-41 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 301 307 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 SUPERFAMILY SSF56784 287 551 1.9E-38 T 12-10-2018 IPR036412 HAD-like superfamily Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 361 596 8.7E-42 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 70 336 7.7E-33 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 10 672 39.662 T 12-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 Pfam PF00702 haloacid dehalogenase-like hydrolase 295 522 1.2E-33 T 12-10-2018 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 16 668 1.6E-295 T 12-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 SUPERFAMILY SSF81665 30 293 7.72E-10 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 Gene3D G3DSA:3.40.1110.10 313 438 1.1E-43 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 299 313 2.5E-22 T 12-10-2018 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 148 162 2.5E-22 T 12-10-2018 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 455 465 2.5E-22 T 12-10-2018 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 508 527 2.5E-22 T 12-10-2018 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 531 543 2.5E-22 T 12-10-2018 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 Gene3D G3DSA:2.70.150.20 99 205 7.2E-26 T 12-10-2018 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 Pfam PF00122 E1-E2 ATPase 103 278 1.5E-33 T 12-10-2018 Alide_3011 6e3839b67cc7fc05c34cd96a4fac0cc2 674 SUPERFAMILY SSF81653 109 201 1.1E-21 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 71 1.0E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 SUPERFAMILY SSF46785 11 92 2.27E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 Gene3D G3DSA:3.40.190.10 175 279 3.4E-31 T 12-10-2018 Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 Gene3D G3DSA:1.10.10.10 11 101 1.6E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 3.6E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 3.6E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 3.6E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 Gene3D G3DSA:3.40.190.10 115 290 3.4E-31 T 12-10-2018 Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 Pfam PF03466 LysR substrate binding domain 98 306 1.2E-25 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4351 e3d9dbb354a0d7a957a616349e7a36ad 313 SUPERFAMILY SSF53850 101 309 1.45E-26 T 12-10-2018 Alide_1350 24f1f23d2d8fb61224e77878e7728e3e 364 Pfam PF07143 CrtC N-terminal lipocalin domain 42 223 1.0E-53 T 12-10-2018 IPR010791 AttH domain Alide_1350 24f1f23d2d8fb61224e77878e7728e3e 364 SUPERFAMILY SSF159245 21 357 2.22E-98 T 12-10-2018 Alide_1350 24f1f23d2d8fb61224e77878e7728e3e 364 Gene3D G3DSA:2.40.370.10 30 226 5.8E-65 T 12-10-2018 IPR023374 AttH-like domain superfamily Alide_1350 24f1f23d2d8fb61224e77878e7728e3e 364 Gene3D G3DSA:2.40.370.10 227 363 5.4E-42 T 12-10-2018 IPR023374 AttH-like domain superfamily Alide_1350 24f1f23d2d8fb61224e77878e7728e3e 364 Pfam PF17186 Lipocalin-like domain 227 357 6.7E-36 T 12-10-2018 Alide_1635 12b890518314db70e84e1b1bb937b76f 593 Pfam PF00664 ABC transporter transmembrane region 41 313 7.0E-36 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Alide_1635 12b890518314db70e84e1b1bb937b76f 593 SUPERFAMILY SSF52540 349 589 8.46E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1635 12b890518314db70e84e1b1bb937b76f 593 SMART SM00382 383 568 2.2E-21 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1635 12b890518314db70e84e1b1bb937b76f 593 Gene3D G3DSA:3.40.50.300 345 592 8.4E-87 T 12-10-2018 Alide_1635 12b890518314db70e84e1b1bb937b76f 593 Pfam PF00005 ABC transporter 374 522 1.7E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1635 12b890518314db70e84e1b1bb937b76f 593 SUPERFAMILY SSF90123 27 343 2.49E-54 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Alide_1635 12b890518314db70e84e1b1bb937b76f 593 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 27 589 4.2E-199 T 12-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 Alide_1635 12b890518314db70e84e1b1bb937b76f 593 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1635 12b890518314db70e84e1b1bb937b76f 593 Gene3D G3DSA:1.20.1560.10 7 343 2.0E-57 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Alide_3738 deda2eed45438eb23c83ba14ce8319c7 366 SUPERFAMILY SSF46565 201 240 4.45E-7 T 12-10-2018 IPR036869 Chaperone J-domain superfamily Alide_3738 deda2eed45438eb23c83ba14ce8319c7 366 Gene3D G3DSA:1.10.287.110 199 248 6.9E-7 T 12-10-2018 IPR036869 Chaperone J-domain superfamily Alide_3807 d23c3f6be7768f3a4b4ba8eaaaa14b38 604 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 562 584 5.6E-12 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_3807 d23c3f6be7768f3a4b4ba8eaaaa14b38 604 SUPERFAMILY SSF52540 338 584 7.5E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3807 d23c3f6be7768f3a4b4ba8eaaaa14b38 604 SMART SM00382 364 561 1.1E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3807 d23c3f6be7768f3a4b4ba8eaaaa14b38 604 Pfam PF00005 ABC transporter 356 513 5.8E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3807 d23c3f6be7768f3a4b4ba8eaaaa14b38 604 Gene3D G3DSA:3.40.50.300 330 593 7.4E-60 T 12-10-2018 Alide_3807 d23c3f6be7768f3a4b4ba8eaaaa14b38 604 Pfam PF02653 Branched-chain amino acid transport system / permease component 33 292 4.3E-39 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_1878 0cc9ab27c1f5c6130f38eee8ec7dc961 386 Gene3D G3DSA:3.50.50.60 6 345 3.4E-74 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1878 0cc9ab27c1f5c6130f38eee8ec7dc961 386 SUPERFAMILY SSF54373 231 314 9.42E-13 T 12-10-2018 Alide_1878 0cc9ab27c1f5c6130f38eee8ec7dc961 386 Pfam PF01266 FAD dependent oxidoreductase 6 341 1.3E-47 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_1878 0cc9ab27c1f5c6130f38eee8ec7dc961 386 SUPERFAMILY SSF51905 4 370 2.81E-43 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1878 0cc9ab27c1f5c6130f38eee8ec7dc961 386 Gene3D G3DSA:3.30.9.10 92 313 3.4E-74 T 12-10-2018 Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 Gene3D G3DSA:3.40.50.1220 193 358 1.7E-47 T 12-10-2018 Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 327 3.2E-34 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 Gene3D G3DSA:3.40.50.970 2 171 5.9E-66 T 12-10-2018 Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 TIGRFAM TIGR01504 glyox_carbo_lig: glyoxylate carboligase 2 594 0.0 T 12-10-2018 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47 Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 SUPERFAMILY SSF52467 161 348 3.27E-46 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 Gene3D G3DSA:3.40.50.970 361 587 1.7E-64 T 12-10-2018 Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 SUPERFAMILY SSF52518 371 577 2.21E-52 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 SUPERFAMILY SSF52518 3 185 1.77E-49 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 172 1.2E-52 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Alide_3096 df1c31ae065c6a7eefde336cede4f248 596 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 558 2.4E-33 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Alide_2204 59057db08a82df768e7540d1cf84e8ad 808 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 33 695 1.9E-248 T 12-10-2018 IPR022946 Uncharacterised protein family UPF0313 Alide_2204 59057db08a82df768e7540d1cf84e8ad 808 Gene3D G3DSA:3.80.30.20 420 684 1.4E-15 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Alide_2204 59057db08a82df768e7540d1cf84e8ad 808 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 33 697 48.271 T 12-10-2018 IPR022946 Uncharacterised protein family UPF0313 Alide_2204 59057db08a82df768e7540d1cf84e8ad 808 Pfam PF04055 Radical SAM superfamily 426 631 2.7E-19 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_2204 59057db08a82df768e7540d1cf84e8ad 808 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 426 446 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Alide_2204 59057db08a82df768e7540d1cf84e8ad 808 SMART SM00729 422 673 1.5E-5 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Alide_2204 59057db08a82df768e7540d1cf84e8ad 808 SUPERFAMILY SSF102114 422 665 2.62E-11 T 12-10-2018 Alide_2204 59057db08a82df768e7540d1cf84e8ad 808 Pfam PF11842 Domain of unknown function (DUF3362) 640 805 2.3E-62 T 12-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal Alide_2204 59057db08a82df768e7540d1cf84e8ad 808 Pfam PF08497 Radical SAM N-terminal 33 425 3.7E-138 T 12-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal Alide_0667 3dae9f11429b02e52fe519d7067c2f00 406 SMART SM00382 47 228 4.0E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0667 3dae9f11429b02e52fe519d7067c2f00 406 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0667 3dae9f11429b02e52fe519d7067c2f00 406 Pfam PF00005 ABC transporter 39 171 1.9E-17 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0667 3dae9f11429b02e52fe519d7067c2f00 406 Pfam PF14524 Wzt C-terminal domain 271 398 2.0E-13 T 12-10-2018 IPR029439 Wzt, C-terminal Alide_0667 3dae9f11429b02e52fe519d7067c2f00 406 Gene3D G3DSA:3.40.50.300 4 276 5.4E-45 T 12-10-2018 Alide_0667 3dae9f11429b02e52fe519d7067c2f00 406 SUPERFAMILY SSF52540 35 235 4.42E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3194 952fa421cba40636ac1715347e57e4e0 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 190 1.9E-28 T 12-10-2018 Alide_3194 952fa421cba40636ac1715347e57e4e0 223 Gene3D G3DSA:3.40.50.1000 13 209 8.8E-49 T 12-10-2018 IPR023214 HAD superfamily Alide_3194 952fa421cba40636ac1715347e57e4e0 223 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 184 7.9E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_3194 952fa421cba40636ac1715347e57e4e0 223 SUPERFAMILY SSF56784 8 221 2.29E-56 T 12-10-2018 IPR036412 HAD-like superfamily Alide_3194 952fa421cba40636ac1715347e57e4e0 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 90 190 1.9E-10 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_3194 952fa421cba40636ac1715347e57e4e0 223 Gene3D G3DSA:1.10.150.240 25 90 8.8E-49 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Alide_0514 36ef903002861b7e07abb5384a63bb2b 216 SUPERFAMILY SSF55469 19 194 5.63E-28 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Alide_0514 36ef903002861b7e07abb5384a63bb2b 216 PIRSF PIRSF000232 12 201 1.8E-54 T 12-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like Alide_0514 36ef903002861b7e07abb5384a63bb2b 216 Gene3D G3DSA:3.40.109.10 17 181 8.7E-36 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Alide_0514 36ef903002861b7e07abb5384a63bb2b 216 Pfam PF00881 Nitroreductase family 34 179 8.8E-26 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Alide_0628 54f3d83d371de9f2d3979138b9b1a4be 411 Gene3D G3DSA:3.40.50.970 3 409 8.0E-124 T 12-10-2018 Alide_0628 54f3d83d371de9f2d3979138b9b1a4be 411 SUPERFAMILY SSF52518 48 408 9.19E-95 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_0628 54f3d83d371de9f2d3979138b9b1a4be 411 Pfam PF00676 Dehydrogenase E1 component 82 376 3.7E-99 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Alide_0628 54f3d83d371de9f2d3979138b9b1a4be 411 Pfam PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal 6 45 1.1E-20 T 12-10-2018 IPR022593 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain KEGG: 00280+1.2.4.4|KEGG: 00640+1.2.4.4|MetaCyc: PWY-5046 Alide_3735 c6f969771bb4ef2bfda9dad5d68cbd01 241 Gene3D G3DSA:3.30.2350.10 68 240 2.3E-15 T 12-10-2018 Alide_3735 c6f969771bb4ef2bfda9dad5d68cbd01 241 SUPERFAMILY SSF55120 104 240 7.55E-12 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3735 c6f969771bb4ef2bfda9dad5d68cbd01 241 SMART SM00363 10 75 4.4E-4 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3735 c6f969771bb4ef2bfda9dad5d68cbd01 241 Gene3D G3DSA:3.10.290.10 7 65 3.2E-14 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Alide_3735 c6f969771bb4ef2bfda9dad5d68cbd01 241 SUPERFAMILY SSF55174 10 75 5.89E-11 T 12-10-2018 Alide_3735 c6f969771bb4ef2bfda9dad5d68cbd01 241 Pfam PF01479 S4 domain 10 52 1.1E-7 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3917 4b092d698c8c66393186fa3b8f1b6b37 273 SMART SM00382 35 244 4.2E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3917 4b092d698c8c66393186fa3b8f1b6b37 273 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3917 4b092d698c8c66393186fa3b8f1b6b37 273 SUPERFAMILY SSF52540 8 249 3.48E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3917 4b092d698c8c66393186fa3b8f1b6b37 273 Pfam PF00005 ABC transporter 26 177 2.2E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3917 4b092d698c8c66393186fa3b8f1b6b37 273 Gene3D G3DSA:3.40.50.300 5 251 3.6E-53 T 12-10-2018 Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 SMART SM00388 174 240 1.1E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 284 382 1.2E-14 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 Gene3D G3DSA:1.10.287.130 124 241 1.0E-18 T 12-10-2018 Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 Pfam PF00512 His Kinase A (phospho-acceptor) domain 175 240 1.4E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 SMART SM00387 283 394 5.4E-24 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 SUPERFAMILY SSF55874 230 385 7.47E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 Gene3D G3DSA:3.30.565.10 247 393 1.2E-26 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 SUPERFAMILY SSF47384 157 240 6.08E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 SMART SM00304 120 173 3.6E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 338 348 1.0E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 373 1.0E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 PRINTS PR00344 Bacterial sensor protein C-terminal signature 320 334 1.0E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0228 ed8ec85a57d65fc7c5a9ad2816e3b018 396 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 77 391 9.2E-94 T 12-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Alide_0182 43271d1ec3c56550514cba228a0766ea 402 SUPERFAMILY SSF53901 247 388 6.81E-24 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0182 43271d1ec3c56550514cba228a0766ea 402 Gene3D G3DSA:3.40.47.10 16 398 3.3E-111 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0182 43271d1ec3c56550514cba228a0766ea 402 PIRSF PIRSF000429 18 396 4.6E-24 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_0182 43271d1ec3c56550514cba228a0766ea 402 Pfam PF02803 Thiolase, C-terminal domain 265 372 9.2E-5 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_0182 43271d1ec3c56550514cba228a0766ea 402 SUPERFAMILY SSF53901 20 243 1.66E-24 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3280 3b3c4a4232875210ed2f3a2ee802851a 325 SUPERFAMILY SSF53850 46 281 2.72E-10 T 12-10-2018 Alide_3280 3b3c4a4232875210ed2f3a2ee802851a 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 304 3.8E-35 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3280 3b3c4a4232875210ed2f3a2ee802851a 325 Gene3D G3DSA:3.40.190.150 32 314 1.1E-60 T 12-10-2018 Alide_3280 3b3c4a4232875210ed2f3a2ee802851a 325 Gene3D G3DSA:3.40.190.10 129 250 1.1E-60 T 12-10-2018 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 PRINTS PR00415 Aconitase family signature 152 165 1.1E-40 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 PRINTS PR00415 Aconitase family signature 206 219 1.1E-40 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 PRINTS PR00415 Aconitase family signature 296 309 1.1E-40 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 PRINTS PR00415 Aconitase family signature 376 390 1.1E-40 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 PRINTS PR00415 Aconitase family signature 546 559 1.1E-40 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 PRINTS PR00415 Aconitase family signature 176 184 1.1E-40 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 PRINTS PR00415 Aconitase family signature 484 495 1.1E-40 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 PRINTS PR00415 Aconitase family signature 220 235 1.1E-40 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 PRINTS PR00415 Aconitase family signature 282 295 1.1E-40 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 ProSitePatterns PS00450 Aconitase family signature 1. 480 496 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 Pfam PF00694 Aconitase C-terminal domain 761 894 1.3E-37 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 Gene3D G3DSA:3.20.19.10 721 968 5.0E-98 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 Gene3D G3DSA:3.30.499.10 440 643 2.1E-86 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 Pfam PF00330 Aconitase family (aconitate hydratase) 75 615 1.3E-175 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 Gene3D G3DSA:3.30.499.20 8 376 1.7E-158 T 12-10-2018 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 Gene3D G3DSA:1.10.1440.20 644 705 1.1E-9 T 12-10-2018 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 SUPERFAMILY SSF52016 689 967 4.51E-74 T 12-10-2018 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 SUPERFAMILY SSF53732 21 669 1.7E-210 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Alide_3071 0356ac4f92ffe07ec2fc43ebf2388f79 968 ProSitePatterns PS01244 Aconitase family signature 2. 546 559 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_2120 830475fc88acd2001a79a0f9f4a3f4b8 215 SUPERFAMILY SSF48150 40 207 6.63E-37 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Alide_2120 830475fc88acd2001a79a0f9f4a3f4b8 215 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 54 194 1.7E-11 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Alide_2120 830475fc88acd2001a79a0f9f4a3f4b8 215 SMART SM00478 57 209 9.5E-14 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Alide_2120 830475fc88acd2001a79a0f9f4a3f4b8 215 Gene3D G3DSA:1.10.1670.40 19 207 6.0E-59 T 12-10-2018 Alide_2120 830475fc88acd2001a79a0f9f4a3f4b8 215 Gene3D G3DSA:1.10.340.30 45 156 6.0E-59 T 12-10-2018 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 SUPERFAMILY SSF52540 340 574 3.9E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 357 370 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 544 553 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 Gene3D G3DSA:1.10.8.60 506 584 2.6E-14 T 12-10-2018 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 Pfam PF00158 Sigma-54 interaction domain 337 498 1.8E-64 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 Pfam PF02954 Bacterial regulatory protein, Fis family 617 647 6.8E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 SUPERFAMILY SSF55781 66 204 3.89E-8 T 12-10-2018 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 Gene3D G3DSA:3.40.50.300 322 505 3.4E-59 T 12-10-2018 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 420 435 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 Pfam PF01590 GAF domain 74 202 7.6E-10 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 Gene3D G3DSA:1.10.10.60 603 649 3.5E-10 T 12-10-2018 Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 Gene3D G3DSA:3.30.450.40 21 205 1.1E-53 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 SMART SM00382 353 497 1.1E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4115 e3af77b87847d2f09490a6a46e8f8cb7 657 SUPERFAMILY SSF46689 544 647 7.89E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4149 d2c133f00b9888d951a9326583c8f3d3 196 Pfam PF03167 Uracil DNA glycosylase superfamily 65 183 2.1E-11 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_4149 d2c133f00b9888d951a9326583c8f3d3 196 SUPERFAMILY SSF52141 55 192 2.55E-21 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_4149 d2c133f00b9888d951a9326583c8f3d3 196 Gene3D G3DSA:3.40.470.10 34 192 4.5E-21 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 SUPERFAMILY SSF81665 232 460 5.36E-10 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 Gene3D G3DSA:3.40.1110.10 478 598 4.3E-85 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 192 775 8.8E-181 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 SUPERFAMILY SSF56784 465 773 1.32E-52 T 12-10-2018 IPR036412 HAD-like superfamily Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 174 776 4.3E-173 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 Pfam PF00702 haloacid dehalogenase-like hydrolase 463 680 3.0E-37 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00943 Copper-transporting ATPase signature 177 196 3.7E-16 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00943 Copper-transporting ATPase signature 643 660 3.7E-16 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00943 Copper-transporting ATPase signature 388 402 3.7E-16 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00943 Copper-transporting ATPase signature 234 253 3.7E-16 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00943 Copper-transporting ATPase signature 450 465 3.7E-16 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00943 Copper-transporting ATPase signature 254 272 3.7E-16 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00943 Copper-transporting ATPase signature 739 753 3.7E-16 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 Gene3D G3DSA:2.70.150.20 258 370 1.1E-42 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 Pfam PF00122 E1-E2 ATPase 265 446 3.7E-55 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 236 744 1.4E-86 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 SUPERFAMILY SSF81653 268 365 1.31E-25 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 469 475 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 591 602 3.2E-28 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 315 329 3.2E-28 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 666 685 3.2E-28 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 467 481 3.2E-28 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 613 623 3.2E-28 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 689 701 3.2E-28 T 12-10-2018 Alide_2731 56c87a6b90f10373a81e3a4fb993fe34 780 Gene3D G3DSA:3.40.50.1000 448 716 4.3E-85 T 12-10-2018 IPR023214 HAD superfamily Alide_0277 6362b6e9024c64658783f83eefe43171 286 SUPERFAMILY SSF53474 22 278 1.08E-47 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0277 6362b6e9024c64658783f83eefe43171 286 Pfam PF12697 Alpha/beta hydrolase family 35 269 1.4E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0277 6362b6e9024c64658783f83eefe43171 286 Gene3D G3DSA:3.40.50.1820 19 282 1.6E-48 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_3190 ae683c6bc9b4cb84b1f430a19d0d3e19 199 Pfam PF02545 Maf-like protein 11 193 2.2E-43 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 Alide_3190 ae683c6bc9b4cb84b1f430a19d0d3e19 199 Hamap MF_00528 Septum formation protein Maf [maf]. 10 198 28.671 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 Alide_3190 ae683c6bc9b4cb84b1f430a19d0d3e19 199 TIGRFAM TIGR00172 maf: septum formation protein Maf 9 192 8.2E-47 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 Alide_3190 ae683c6bc9b4cb84b1f430a19d0d3e19 199 SUPERFAMILY SSF52972 10 192 9.81E-56 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Alide_3190 ae683c6bc9b4cb84b1f430a19d0d3e19 199 PIRSF PIRSF006305 5 198 3.5E-41 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 Alide_3190 ae683c6bc9b4cb84b1f430a19d0d3e19 199 Gene3D G3DSA:3.90.950.10 9 198 2.2E-57 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Alide_0860 ce4bbaca532067b2d44574f4eb7853ea 319 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 11 290 32.541 T 12-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Alide_0860 ce4bbaca532067b2d44574f4eb7853ea 319 SUPERFAMILY SSF53335 11 289 5.91E-76 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0860 ce4bbaca532067b2d44574f4eb7853ea 319 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 87 100 - T 12-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Alide_0860 ce4bbaca532067b2d44574f4eb7853ea 319 Gene3D G3DSA:3.40.50.150 62 302 2.1E-69 T 12-10-2018 Alide_0860 ce4bbaca532067b2d44574f4eb7853ea 319 Gene3D G3DSA:2.30.140.10 3 60 1.2E-9 T 12-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Alide_0860 ce4bbaca532067b2d44574f4eb7853ea 319 Pfam PF01564 Spermine/spermidine synthase domain 66 242 4.4E-39 T 12-10-2018 Alide_0860 ce4bbaca532067b2d44574f4eb7853ea 319 Pfam PF17284 Spermidine synthase tetramerisation domain 20 63 2.7E-7 T 12-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 Gene3D G3DSA:3.30.365.10 157 374 3.7E-60 T 12-10-2018 Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 Gene3D G3DSA:3.30.365.10 200 297 3.7E-60 T 12-10-2018 Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 Gene3D G3DSA:3.90.1170.50 3 145 6.9E-48 T 12-10-2018 Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 Gene3D G3DSA:3.30.365.10 437 783 1.8E-137 T 12-10-2018 Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 SMART SM01008 26 145 7.6E-58 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 SUPERFAMILY SSF56003 137 786 5.36E-198 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 Gene3D G3DSA:3.30.365.10 468 637 1.8E-137 T 12-10-2018 Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 159 723 5.2E-170 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 26 144 4.3E-31 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Alide_1973 c622dc1678b4b7b69c876d90a44074b1 790 SUPERFAMILY SSF54665 6 159 9.16E-48 T 12-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily Alide_2287 8f6dbb97a22abb59df8b0932d24ee122 713 Pfam PF01642 Methylmalonyl-CoA mutase 30 543 1.8E-241 T 12-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Alide_2287 8f6dbb97a22abb59df8b0932d24ee122 713 SUPERFAMILY SSF51703 5 545 1.88E-226 T 12-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Alide_2287 8f6dbb97a22abb59df8b0932d24ee122 713 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 582 711 2.8E-59 T 12-10-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Alide_2287 8f6dbb97a22abb59df8b0932d24ee122 713 Pfam PF02310 B12 binding domain 585 694 4.0E-16 T 12-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Alide_2287 8f6dbb97a22abb59df8b0932d24ee122 713 Gene3D G3DSA:3.40.50.280 549 712 5.1E-54 T 12-10-2018 Alide_2287 8f6dbb97a22abb59df8b0932d24ee122 713 Gene3D G3DSA:3.20.20.240 29 545 6.6E-244 T 12-10-2018 Alide_2287 8f6dbb97a22abb59df8b0932d24ee122 713 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 29 550 1.3E-268 T 12-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Alide_2287 8f6dbb97a22abb59df8b0932d24ee122 713 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 372 397 - T 12-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Alide_2287 8f6dbb97a22abb59df8b0932d24ee122 713 SUPERFAMILY SSF52242 550 709 2.22E-57 T 12-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Alide_4415 72206a45feae8841d3631c695cad621d 310 Pfam PF01418 Helix-turn-helix domain, rpiR family 15 83 3.5E-14 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Alide_4415 72206a45feae8841d3631c695cad621d 310 SUPERFAMILY SSF46689 13 84 5.2E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4415 72206a45feae8841d3631c695cad621d 310 Pfam PF01380 SIS domain 140 266 1.4E-17 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Alide_4415 72206a45feae8841d3631c695cad621d 310 SUPERFAMILY SSF53697 109 279 1.11E-25 T 12-10-2018 Alide_4415 72206a45feae8841d3631c695cad621d 310 Gene3D G3DSA:3.40.50.10490 106 288 7.9E-36 T 12-10-2018 Alide_4415 72206a45feae8841d3631c695cad621d 310 Gene3D G3DSA:1.10.10.10 10 89 2.1E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2022 210fb095c25b04ee7a502f528e4a11ae 411 Gene3D G3DSA:1.20.1250.20 11 396 3.3E-24 T 12-10-2018 Alide_2022 210fb095c25b04ee7a502f528e4a11ae 411 Pfam PF05977 Transmembrane secretion effector 12 396 1.8E-34 T 12-10-2018 IPR010290 Transmembrane secretion effector Alide_2022 210fb095c25b04ee7a502f528e4a11ae 411 SUPERFAMILY SSF103473 16 405 1.7E-33 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1341 8bc06f67ebf25c8f8f9ea8315a82f38d 227 Gene3D G3DSA:1.10.3720.10 1 225 6.9E-55 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1341 8bc06f67ebf25c8f8f9ea8315a82f38d 227 SUPERFAMILY SSF161098 5 221 2.22E-47 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1341 8bc06f67ebf25c8f8f9ea8315a82f38d 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 217 7.4E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1341 8bc06f67ebf25c8f8f9ea8315a82f38d 227 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 16 222 2.2E-73 T 12-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 Alide_0829 0183c9bd35eb02b5765caef38f176010 230 Pfam PF01926 50S ribosome-binding GTPase 44 159 1.3E-17 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_0829 0183c9bd35eb02b5765caef38f176010 230 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 30 216 24.852 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Alide_0829 0183c9bd35eb02b5765caef38f176010 230 SUPERFAMILY SSF52540 26 216 4.91E-30 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0829 0183c9bd35eb02b5765caef38f176010 230 Gene3D G3DSA:3.40.50.300 17 225 4.7E-49 T 12-10-2018 Alide_0829 0183c9bd35eb02b5765caef38f176010 230 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 25 212 7.0E-60 T 12-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Alide_2203 b1f4a01213b9cf45fa1130860a9c0d9a 152 TIGRFAM TIGR02695 azurin: azurin 26 150 1.1E-58 T 12-10-2018 IPR014068 Azurin Alide_2203 b1f4a01213b9cf45fa1130860a9c0d9a 152 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 24 150 2.8E-25 T 12-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 Alide_2203 b1f4a01213b9cf45fa1130860a9c0d9a 152 Gene3D G3DSA:2.60.40.420 24 150 8.8E-44 T 12-10-2018 IPR008972 Cupredoxin Alide_2203 b1f4a01213b9cf45fa1130860a9c0d9a 152 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 30 148 1.0E-39 T 12-10-2018 Alide_2203 b1f4a01213b9cf45fa1130860a9c0d9a 152 SUPERFAMILY SSF49503 24 149 5.46E-44 T 12-10-2018 IPR008972 Cupredoxin Alide_2203 b1f4a01213b9cf45fa1130860a9c0d9a 152 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 128 144 - T 12-10-2018 IPR028871 Blue (type 1) copper protein, binding site Alide_1774 c67677cceefb676209ac17ad07a2b577 500 Pfam PF00474 Sodium:solute symporter family 37 440 1.3E-122 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Alide_1774 c67677cceefb676209ac17ad07a2b577 500 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 9 492 9.2E-211 T 12-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 Alide_1774 c67677cceefb676209ac17ad07a2b577 500 Gene3D G3DSA:1.20.1730.10 26 498 2.1E-89 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily Alide_1774 c67677cceefb676209ac17ad07a2b577 500 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 422 442 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site Alide_1774 c67677cceefb676209ac17ad07a2b577 500 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 37 440 1.6E-110 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 Pfam PF00231 ATP synthase 5 287 2.1E-93 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 SUPERFAMILY SSF52943 4 288 1.96E-92 T 12-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 274 287 - T 12-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 288 5.4E-103 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 Gene3D G3DSA:1.10.287.80 6 284 8.2E-104 T 12-10-2018 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 Gene3D G3DSA:3.40.1380.10 61 207 8.2E-104 T 12-10-2018 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 288 35.073 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.0E-33 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.0E-33 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 PRINTS PR00126 ATP synthase gamma subunit signature 266 287 1.0E-33 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0438 caf0826a31573bd3b7e89f93c1fccdb6 288 PRINTS PR00126 ATP synthase gamma subunit signature 235 254 1.0E-33 T 12-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_3094 b93883585cf3752c1abe57fd1848e68a 304 PIRSF PIRSF000103 2 299 4.2E-72 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_3094 b93883585cf3752c1abe57fd1848e68a 304 SUPERFAMILY SSF51735 6 167 1.61E-41 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3094 b93883585cf3752c1abe57fd1848e68a 304 Gene3D G3DSA:3.40.50.720 5 165 2.1E-50 T 12-10-2018 Alide_3094 b93883585cf3752c1abe57fd1848e68a 304 SUPERFAMILY SSF48179 169 297 3.85E-38 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_3094 b93883585cf3752c1abe57fd1848e68a 304 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 290 1.1E-38 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Alide_3094 b93883585cf3752c1abe57fd1848e68a 304 Gene3D G3DSA:1.10.1040.10 166 299 1.3E-40 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_3094 b93883585cf3752c1abe57fd1848e68a 304 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 7 167 4.1E-46 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Alide_3094 b93883585cf3752c1abe57fd1848e68a 304 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 7 298 3.9E-122 T 12-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 Alide_2979 03a49effd8f23144a16bba78a70430fa 321 Gene3D G3DSA:3.40.190.150 29 311 2.6E-99 T 12-10-2018 Alide_2979 03a49effd8f23144a16bba78a70430fa 321 PIRSF PIRSF017082 1 321 8.2E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2979 03a49effd8f23144a16bba78a70430fa 321 SUPERFAMILY SSF53850 111 275 1.38E-11 T 12-10-2018 Alide_2979 03a49effd8f23144a16bba78a70430fa 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 314 5.0E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2979 03a49effd8f23144a16bba78a70430fa 321 Gene3D G3DSA:3.40.190.10 123 246 2.6E-99 T 12-10-2018 Alide_4228 31f2eddc4e81f89be02412940c341f44 152 Gene3D G3DSA:1.10.10.10 8 52 6.8E-8 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4228 31f2eddc4e81f89be02412940c341f44 152 Gene3D G3DSA:1.10.10.10 54 96 1.4E-7 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4228 31f2eddc4e81f89be02412940c341f44 152 Gene3D G3DSA:1.10.10.10 101 149 2.0E-11 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4228 31f2eddc4e81f89be02412940c341f44 152 Pfam PF02631 RecX family 31 147 2.9E-24 T 12-10-2018 IPR003783 Regulatory protein RecX GO:0006282 Alide_4228 31f2eddc4e81f89be02412940c341f44 152 Hamap MF_01114 Regulatory protein RecX [recX]. 2 152 12.966 T 12-10-2018 IPR003783 Regulatory protein RecX GO:0006282 Alide_4031 361d4241e915cd6dfd92023705f37e05 315 Pfam PF06834 TraU protein 37 303 7.9E-73 T 12-10-2018 IPR009649 TraU Alide_4031 361d4241e915cd6dfd92023705f37e05 315 TIGRFAM TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family 29 313 4.2E-131 T 12-10-2018 IPR026331 Integrating conjugative element protein PFL_4710 Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 80 1.7E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 TIGRFAM TIGR03338 phnR_burk: phosphonate utilization associated transcriptional regulator 8 218 4.0E-93 T 12-10-2018 IPR017723 Transcription regulator, 2-aminoethylphosphonate utilisation-associated Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 SMART SM00895 90 214 1.1E-21 T 12-10-2018 IPR011711 GntR, C-terminal Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 SMART SM00345 22 80 5.2E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 Pfam PF07729 FCD domain 90 213 1.6E-28 T 12-10-2018 IPR011711 GntR, C-terminal Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 SUPERFAMILY SSF46785 14 84 5.39E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 Gene3D G3DSA:1.20.120.530 84 228 3.1E-29 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 2.9E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 2.9E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 SUPERFAMILY SSF48008 86 223 7.85E-30 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_4218 d121fa02157dee643b4d8ab21f7360a9 242 Gene3D G3DSA:1.10.10.10 11 81 4.2E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0620 125ab87d29d853e10474397ce59ac2c7 405 Gene3D G3DSA:3.40.47.10 260 405 1.3E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0620 125ab87d29d853e10474397ce59ac2c7 405 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 246 3.1E-44 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Alide_0620 125ab87d29d853e10474397ce59ac2c7 405 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site Alide_0620 125ab87d29d853e10474397ce59ac2c7 405 SUPERFAMILY SSF53901 215 404 5.76E-59 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0620 125ab87d29d853e10474397ce59ac2c7 405 Gene3D G3DSA:3.40.47.10 1 254 4.2E-62 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0620 125ab87d29d853e10474397ce59ac2c7 405 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 361 4.8E-25 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Alide_0620 125ab87d29d853e10474397ce59ac2c7 405 SUPERFAMILY SSF53901 4 253 1.3E-62 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0620 125ab87d29d853e10474397ce59ac2c7 405 SMART SM00825 Beta-ketoacyl synthase 6 404 3.5E-12 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Alide_1284 34adeaada891b764d6541db11afa77bc 633 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 59 115 1.0E-15 T 12-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 Alide_1284 34adeaada891b764d6541db11afa77bc 633 Pfam PF03237 Terminase-like family 209 425 6.7E-54 T 12-10-2018 IPR004921 Terminase large subunit, T4likevirus-type Alide_1284 34adeaada891b764d6541db11afa77bc 633 Gene3D G3DSA:3.40.50.300 154 349 3.4E-20 T 12-10-2018 Alide_1284 34adeaada891b764d6541db11afa77bc 633 Gene3D G3DSA:3.30.420.240 430 612 4.9E-14 T 12-10-2018 Alide_1284 34adeaada891b764d6541db11afa77bc 633 Pfam PF17289 Terminase RNaseH-like domain 453 611 1.4E-35 T 12-10-2018 IPR035421 Terminase, large subunit gp17-like Alide_2308 17e66eaf7b184d19a772a9f5bab6f0b5 232 SUPERFAMILY SSF89562 10 185 1.83E-18 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_2308 17e66eaf7b184d19a772a9f5bab6f0b5 232 Gene3D G3DSA:3.50.30.40 3 185 4.1E-23 T 12-10-2018 Alide_2308 17e66eaf7b184d19a772a9f5bab6f0b5 232 Pfam PF03737 Aldolase/RraA 17 184 4.6E-16 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 Pfam PF13404 AsnC-type helix-turn-helix domain 8 49 1.1E-14 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 SUPERFAMILY SSF54909 68 161 9.25E-22 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 Pfam PF01037 Lrp/AsnC ligand binding domain 76 151 1.3E-24 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 1.3E-13 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 1.3E-13 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 1.3E-13 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 SUPERFAMILY SSF46785 6 87 3.15E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 SMART SM00344 8 121 1.3E-30 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 Gene3D G3DSA:3.30.70.920 62 149 3.3E-29 T 12-10-2018 Alide_0625 2e27e28f86feb83e9ab9da5216ded53e 161 Gene3D G3DSA:1.10.10.10 1 61 8.8E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2221 cc64f3ae7dec68fd7a73fb51258a09c8 213 Gene3D G3DSA:3.40.30.10 76 153 6.2E-12 T 12-10-2018 Alide_2221 cc64f3ae7dec68fd7a73fb51258a09c8 213 Pfam PF13511 Domain of unknown function (DUF4124) 13 56 1.2E-8 T 12-10-2018 IPR025392 Domain of unknown function DUF4124 Alide_2221 cc64f3ae7dec68fd7a73fb51258a09c8 213 SUPERFAMILY SSF52833 76 148 1.47E-10 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2221 cc64f3ae7dec68fd7a73fb51258a09c8 213 Pfam PF00462 Glutaredoxin 77 126 3.2E-6 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 SUPERFAMILY SSF82693 544 645 9.94E-10 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 Gene3D G3DSA:3.30.70.1430 546 645 1.9E-277 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 Pfam PF00873 AcrB/AcrD/AcrF family 4 1002 2.8E-218 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 SUPERFAMILY SSF82866 783 1007 2.88E-44 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 SUPERFAMILY SSF82866 289 488 5.62E-47 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 Gene3D G3DSA:3.30.2090.10 178 268 1.9E-277 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 SUPERFAMILY SSF82693 41 134 1.46E-18 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.3E-53 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 1.3E-53 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 1.3E-53 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 PRINTS PR00702 Acriflavin resistance protein family signature 531 548 1.3E-53 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.3E-53 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 1.3E-53 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 1.3E-53 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 1.3E-53 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 SUPERFAMILY SSF82693 136 312 2.49E-14 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 Gene3D G3DSA:1.20.1640.10 10 499 1.9E-277 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 Gene3D G3DSA:3.30.70.1440 646 841 1.9E-277 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 Gene3D G3DSA:3.30.70.1320 134 324 1.9E-277 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 SUPERFAMILY SSF82714 182 264 1.18E-10 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 Gene3D G3DSA:1.20.1640.10 500 999 1.9E-277 T 12-10-2018 Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 SUPERFAMILY SSF82714 695 781 3.53E-9 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 Gene3D G3DSA:3.30.2090.10 694 784 1.9E-277 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_4245 44db1ffa3a4d4d077799c361838e0e63 1019 Gene3D G3DSA:3.30.70.1430 40 792 1.9E-277 T 12-10-2018 Alide_0011 b53272661a17c7946b50b8084e547160 387 SUPERFAMILY SSF56645 2 244 9.95E-73 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0011 b53272661a17c7946b50b8084e547160 387 PIRSF PIRSF016578 2 365 2.5E-12 T 12-10-2018 Alide_0011 b53272661a17c7946b50b8084e547160 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0011 b53272661a17c7946b50b8084e547160 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 380 2.1E-42 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0011 b53272661a17c7946b50b8084e547160 387 Gene3D G3DSA:1.10.540.10 1 119 6.0E-36 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0011 b53272661a17c7946b50b8084e547160 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0011 b53272661a17c7946b50b8084e547160 387 Gene3D G3DSA:2.40.110.10 120 235 9.6E-39 T 12-10-2018 Alide_0011 b53272661a17c7946b50b8084e547160 387 Gene3D G3DSA:1.20.140.10 236 386 3.4E-41 T 12-10-2018 Alide_0011 b53272661a17c7946b50b8084e547160 387 SUPERFAMILY SSF47203 232 380 8.86E-43 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0011 b53272661a17c7946b50b8084e547160 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 220 8.4E-22 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0011 b53272661a17c7946b50b8084e547160 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 3 117 1.2E-25 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 Gene3D G3DSA:3.40.50.720 1 257 1.1E-77 T 12-10-2018 Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 1.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 1.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.3E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 1.3E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 1.3E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 SUPERFAMILY SSF51735 11 256 3.19E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2900 b8acefbb886dcc44d2bd67bd274d807b 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 254 2.9E-55 T 12-10-2018 Alide_1222 d5395a0fdadfd374d4409c737d8d11c7 717 SUPERFAMILY SSF56935 32 717 7.59E-79 T 12-10-2018 Alide_1222 d5395a0fdadfd374d4409c737d8d11c7 717 Gene3D G3DSA:2.40.170.20 187 717 1.4E-62 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Alide_1222 d5395a0fdadfd374d4409c737d8d11c7 717 Pfam PF00593 TonB dependent receptor 269 716 1.8E-34 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_1222 d5395a0fdadfd374d4409c737d8d11c7 717 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 700 717 - T 12-10-2018 IPR010917 TonB-dependent receptor, conserved site Alide_1222 d5395a0fdadfd374d4409c737d8d11c7 717 Pfam PF07715 TonB-dependent Receptor Plug Domain 85 176 2.2E-6 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_1222 d5395a0fdadfd374d4409c737d8d11c7 717 Gene3D G3DSA:2.170.130.10 60 182 7.3E-8 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_3913 068aff9a4902e59fec58cfce8312891b 395 Pfam PF02803 Thiolase, C-terminal domain 272 394 1.5E-44 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_3913 068aff9a4902e59fec58cfce8312891b 395 Gene3D G3DSA:3.40.47.10 129 391 2.2E-150 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3913 068aff9a4902e59fec58cfce8312891b 395 PIRSF PIRSF000429 1 395 1.5E-130 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3913 068aff9a4902e59fec58cfce8312891b 395 Gene3D G3DSA:3.40.47.10 8 278 2.2E-150 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3913 068aff9a4902e59fec58cfce8312891b 395 ProSitePatterns PS00099 Thiolases active site. 376 389 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 Alide_3913 068aff9a4902e59fec58cfce8312891b 395 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_3913 068aff9a4902e59fec58cfce8312891b 395 Pfam PF00108 Thiolase, N-terminal domain 6 263 3.7E-91 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_3913 068aff9a4902e59fec58cfce8312891b 395 SUPERFAMILY SSF53901 273 394 7.4E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3913 068aff9a4902e59fec58cfce8312891b 395 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 393 1.9E-139 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3913 068aff9a4902e59fec58cfce8312891b 395 SUPERFAMILY SSF53901 5 272 1.85E-83 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1841 f85041217df40259a9b63937e4b14c14 180 SUPERFAMILY SSF46785 2 133 2.12E-27 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1841 f85041217df40259a9b63937e4b14c14 180 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 2.2E-33 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type Alide_1841 f85041217df40259a9b63937e4b14c14 180 Pfam PF02082 Transcriptional regulator 1 82 3.0E-23 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type Alide_1841 f85041217df40259a9b63937e4b14c14 180 Gene3D G3DSA:1.10.10.10 1 141 3.3E-38 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1841 f85041217df40259a9b63937e4b14c14 180 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 12-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site Alide_0622 0536f1c3067483a8c75d2fc79fd9978d 529 SUPERFAMILY SSF56317 243 490 1.83E-32 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Alide_0622 0536f1c3067483a8c75d2fc79fd9978d 529 Pfam PF00795 Carbon-nitrogen hydrolase 269 490 1.1E-17 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Alide_0622 0536f1c3067483a8c75d2fc79fd9978d 529 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 15 515 19.554 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Alide_0622 0536f1c3067483a8c75d2fc79fd9978d 529 Gene3D G3DSA:3.60.110.10 268 493 5.8E-11 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Alide_0622 0536f1c3067483a8c75d2fc79fd9978d 529 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 78 473 2.3E-80 T 12-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 Alide_3228 e0cfd81173aa8d6a3d2a0c0e9c29f62d 640 SUPERFAMILY SSF52540 75 345 1.14E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3228 e0cfd81173aa8d6a3d2a0c0e9c29f62d 640 SMART SM00763 19 376 1.5E-209 T 12-10-2018 IPR013153 PrkA AAA domain Alide_3228 e0cfd81173aa8d6a3d2a0c0e9c29f62d 640 Pfam PF08298 PrkA AAA domain 19 376 9.8E-171 T 12-10-2018 IPR013153 PrkA AAA domain Alide_3228 e0cfd81173aa8d6a3d2a0c0e9c29f62d 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 3.1E-71 T 12-10-2018 IPR010650 PrkA C-terminal domain Alide_3228 e0cfd81173aa8d6a3d2a0c0e9c29f62d 640 PIRSF PIRSF000549 1 640 6.8E-287 T 12-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 Alide_0591 3968c71c7ce5d7bcc37c5ea52460bab9 310 PIRSF PIRSF004976 11 284 1.5E-72 T 12-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 Alide_0591 3968c71c7ce5d7bcc37c5ea52460bab9 310 SUPERFAMILY SSF52402 30 246 1.01E-53 T 12-10-2018 Alide_0591 3968c71c7ce5d7bcc37c5ea52460bab9 310 Gene3D G3DSA:3.40.50.620 16 278 7.0E-44 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_0591 3968c71c7ce5d7bcc37c5ea52460bab9 310 Pfam PF01171 PP-loop family 53 215 1.3E-13 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Alide_0591 3968c71c7ce5d7bcc37c5ea52460bab9 310 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 21 282 55.684 T 12-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 Alide_0433 41e5a8a1fc6618964b5cb27958d6b10b 287 ProSitePatterns PS00449 ATP synthase a subunit signature. 211 220 - T 12-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0433 41e5a8a1fc6618964b5cb27958d6b10b 287 SUPERFAMILY SSF81336 94 280 3.53E-36 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0433 41e5a8a1fc6618964b5cb27958d6b10b 287 Pfam PF00119 ATP synthase A chain 42 280 7.1E-54 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0433 41e5a8a1fc6618964b5cb27958d6b10b 287 Hamap MF_01393 ATP synthase subunit a [atpB]. 11 287 14.187 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0433 41e5a8a1fc6618964b5cb27958d6b10b 287 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 32 282 1.0E-39 T 12-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0433 41e5a8a1fc6618964b5cb27958d6b10b 287 Gene3D G3DSA:1.20.120.220 91 287 1.4E-51 T 12-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 SUPERFAMILY SSF82693 561 652 2.2E-16 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 SUPERFAMILY SSF82714 183 265 3.14E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 Gene3D G3DSA:3.30.70.1430 563 655 8.8E-290 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 SUPERFAMILY SSF82693 136 324 2.09E-23 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 Gene3D G3DSA:3.30.70.1320 135 326 8.8E-290 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 SUPERFAMILY SSF82693 40 134 2.88E-21 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 Gene3D G3DSA:1.20.1640.10 10 508 8.8E-290 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 SUPERFAMILY SSF82714 710 791 1.22E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 Gene3D G3DSA:3.30.70.1430 40 803 8.8E-290 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.6E-79 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 8.6E-79 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 8.6E-79 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 548 565 8.6E-79 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 8.6E-79 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.6E-79 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 8.6E-79 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 8.6E-79 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 8.6E-79 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 Pfam PF00873 AcrB/AcrD/AcrF family 4 1014 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 Gene3D G3DSA:1.20.1640.10 509 1011 8.8E-290 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 Gene3D G3DSA:3.30.2090.10 179 269 8.8E-290 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 Gene3D G3DSA:3.30.2090.10 707 795 8.8E-290 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 SUPERFAMILY SSF82693 669 834 3.49E-7 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 SUPERFAMILY SSF82866 290 491 2.22E-47 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 SUPERFAMILY SSF82866 817 1015 2.35E-39 T 12-10-2018 Alide_3059 72e7ffc36aa827ef017a3fbdc48d095c 1041 Gene3D G3DSA:3.30.70.1440 656 853 8.8E-290 T 12-10-2018 Alide_2309 4c3605435910eb211de00b752fa8eedc 338 SUPERFAMILY SSF53850 70 297 5.43E-14 T 12-10-2018 Alide_2309 4c3605435910eb211de00b752fa8eedc 338 Gene3D G3DSA:3.40.190.150 46 328 2.8E-107 T 12-10-2018 Alide_2309 4c3605435910eb211de00b752fa8eedc 338 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 61 334 3.4E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2309 4c3605435910eb211de00b752fa8eedc 338 PIRSF PIRSF017082 3 338 6.0E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2309 4c3605435910eb211de00b752fa8eedc 338 Gene3D G3DSA:3.40.190.10 140 263 2.8E-107 T 12-10-2018 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 38 169 9.2E-20 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 Gene3D G3DSA:3.90.79.10 216 352 3.3E-9 T 12-10-2018 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 Gene3D G3DSA:1.10.340.30 23 134 4.8E-84 T 12-10-2018 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 SUPERFAMILY SSF55811 226 352 2.84E-18 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 Pfam PF00633 Helix-hairpin-helix motif 102 130 1.2E-8 T 12-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 9 277 2.2E-101 T 12-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 SMART SM00525 197 217 0.0048 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 SMART SM00478 41 196 3.2E-48 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 SUPERFAMILY SSF48150 9 230 1.26E-72 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 Gene3D G3DSA:1.10.1670.10 11 215 4.8E-84 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Alide_0988 5481a3d9c6b8d323019cad7e7c00d296 352 Pfam PF14815 NUDIX domain 240 350 6.2E-19 T 12-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Alide_1195 322f18716a2eaf135c8a30cf38e7819c 260 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 236 256 6.0E-12 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_1195 322f18716a2eaf135c8a30cf38e7819c 260 SUPERFAMILY SSF52540 9 255 2.15E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1195 322f18716a2eaf135c8a30cf38e7819c 260 Pfam PF00005 ABC transporter 25 185 1.7E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1195 322f18716a2eaf135c8a30cf38e7819c 260 Gene3D G3DSA:3.40.50.300 5 258 3.5E-63 T 12-10-2018 Alide_1195 322f18716a2eaf135c8a30cf38e7819c 260 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1195 322f18716a2eaf135c8a30cf38e7819c 260 SMART SM00382 34 242 1.7E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0788 e390a824b5ff5587b9977a601986516c 409 Pfam PF00482 Type II secretion system (T2SS), protein F 278 398 4.2E-24 T 12-10-2018 IPR018076 Type II secretion system F domain Alide_0788 e390a824b5ff5587b9977a601986516c 409 Pfam PF00482 Type II secretion system (T2SS), protein F 75 198 2.2E-31 T 12-10-2018 IPR018076 Type II secretion system F domain Alide_0788 e390a824b5ff5587b9977a601986516c 409 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 408 1.4E-133 T 12-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 Alide_0788 e390a824b5ff5587b9977a601986516c 409 Gene3D G3DSA:1.20.81.30 261 373 1.2E-23 T 12-10-2018 Alide_0788 e390a824b5ff5587b9977a601986516c 409 Gene3D G3DSA:1.20.81.30 63 177 3.2E-26 T 12-10-2018 Alide_0788 e390a824b5ff5587b9977a601986516c 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 71 83 1.3E-27 T 12-10-2018 IPR003004 GspF/PilC family Alide_0788 e390a824b5ff5587b9977a601986516c 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 170 198 1.3E-27 T 12-10-2018 IPR003004 GspF/PilC family Alide_0788 e390a824b5ff5587b9977a601986516c 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 373 387 1.3E-27 T 12-10-2018 IPR003004 GspF/PilC family Alide_0788 e390a824b5ff5587b9977a601986516c 409 PRINTS PR00812 Bacterial general secretion pathway protein F signature 389 408 1.3E-27 T 12-10-2018 IPR003004 GspF/PilC family Alide_1176 32de43d52403703e02d2d72c7551fe4b 165 TIGRFAM TIGR00077 lspA: signal peptidase II 17 163 4.3E-40 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Alide_1176 32de43d52403703e02d2d72c7551fe4b 165 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 103 118 7.8E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Alide_1176 32de43d52403703e02d2d72c7551fe4b 165 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 56 64 7.8E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Alide_1176 32de43d52403703e02d2d72c7551fe4b 165 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 139 155 7.8E-18 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Alide_1176 32de43d52403703e02d2d72c7551fe4b 165 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 10 164 16.693 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Alide_1176 32de43d52403703e02d2d72c7551fe4b 165 ProSitePatterns PS00855 Signal peptidases II signature. 106 118 - T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Alide_1176 32de43d52403703e02d2d72c7551fe4b 165 Pfam PF01252 Signal peptidase (SPase) II 19 158 3.5E-38 T 12-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 Alide_0541 c2b0dd85b64c679b2f069ffb37dd4421 280 SMART SM00382 44 242 6.0E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0541 c2b0dd85b64c679b2f069ffb37dd4421 280 SUPERFAMILY SSF52540 17 257 1.89E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0541 c2b0dd85b64c679b2f069ffb37dd4421 280 Pfam PF00005 ABC transporter 35 185 4.3E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0541 c2b0dd85b64c679b2f069ffb37dd4421 280 Gene3D G3DSA:3.40.50.300 14 259 1.6E-53 T 12-10-2018 Alide_1058 5439b4d5ce12cd4146093afe4e4fea3b 491 Pfam PF00361 Proton-conducting membrane transporter 131 413 1.9E-78 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1058 5439b4d5ce12cd4146093afe4e4fea3b 491 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 4 484 4.2E-181 T 12-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1058 5439b4d5ce12cd4146093afe4e4fea3b 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 375 401 1.4E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1058 5439b4d5ce12cd4146093afe4e4fea3b 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 135 154 1.4E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1058 5439b4d5ce12cd4146093afe4e4fea3b 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 165 189 1.4E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1058 5439b4d5ce12cd4146093afe4e4fea3b 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 323 342 1.4E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1058 5439b4d5ce12cd4146093afe4e4fea3b 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 235 259 1.4E-48 T 12-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1467 1ffa8861d78e4b33c5e3ccb1a3a1d4e0 186 Gene3D G3DSA:1.10.132.20 101 186 2.4E-27 T 12-10-2018 Alide_1467 1ffa8861d78e4b33c5e3ccb1a3a1d4e0 186 Gene3D G3DSA:1.10.132.20 1 36 3.7E-5 T 12-10-2018 Alide_1467 1ffa8861d78e4b33c5e3ccb1a3a1d4e0 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 4 186 26.606 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Alide_1467 1ffa8861d78e4b33c5e3ccb1a3a1d4e0 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 12 185 8.5E-68 T 12-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Alide_1467 1ffa8861d78e4b33c5e3ccb1a3a1d4e0 186 Gene3D G3DSA:3.30.1360.40 37 100 8.4E-29 T 12-10-2018 Alide_1467 1ffa8861d78e4b33c5e3ccb1a3a1d4e0 186 SUPERFAMILY SSF55194 5 184 2.35E-68 T 12-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 Alide_1467 1ffa8861d78e4b33c5e3ccb1a3a1d4e0 186 Pfam PF01765 Ribosome recycling factor 21 184 2.8E-62 T 12-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 104 123 3.2E-49 T 12-10-2018 IPR017861 Kae1/TsaD family Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 271 280 3.2E-49 T 12-10-2018 IPR017861 Kae1/TsaD family Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 6 19 3.2E-49 T 12-10-2018 IPR017861 Kae1/TsaD family Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 83 103 3.2E-49 T 12-10-2018 IPR017861 Kae1/TsaD family Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 161 182 3.2E-49 T 12-10-2018 IPR017861 Kae1/TsaD family Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 138 150 3.2E-49 T 12-10-2018 IPR017861 Kae1/TsaD family Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 ProSitePatterns PS01016 Glycoprotease family signature. 103 123 - T 12-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 Gene3D G3DSA:3.30.420.40 5 323 5.3E-123 T 12-10-2018 Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 5 321 9.5E-130 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 3 342 62.891 T 12-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 SUPERFAMILY SSF53067 4 129 3.88E-27 T 12-10-2018 Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 Gene3D G3DSA:3.30.420.40 136 301 5.3E-123 T 12-10-2018 Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 SUPERFAMILY SSF53067 108 316 4.53E-42 T 12-10-2018 Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 Pfam PF00814 Glycoprotease family 31 314 2.8E-99 T 12-10-2018 IPR000905 Gcp-like domain Alide_2385 ab7087f9db6bd91932bee0a09b899d92 347 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 6 314 2.5E-111 T 12-10-2018 IPR017861 Kae1/TsaD family Alide_4099 9f8b8bc5cf8a15da5bd37df6fad817dc 413 TIGRFAM TIGR00843 benE: benzoate transporter 13 398 1.1E-123 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 Alide_4099 9f8b8bc5cf8a15da5bd37df6fad817dc 413 Pfam PF03594 Benzoate membrane transport protein 20 397 4.7E-138 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 Alide_1030 17879a7ab786c740deed49d3351846c6 646 SUPERFAMILY SSF52540 386 610 5.71E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1030 17879a7ab786c740deed49d3351846c6 646 Gene3D G3DSA:3.40.50.300 375 573 3.2E-41 T 12-10-2018 Alide_1030 17879a7ab786c740deed49d3351846c6 646 SMART SM00382 430 562 1.2E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1030 17879a7ab786c740deed49d3351846c6 646 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 435 560 1.1E-23 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_1030 17879a7ab786c740deed49d3351846c6 646 SUPERFAMILY SSF52540 193 353 1.83E-6 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1949 1eca430d1865c87254ced1e22d9137ce 157 TIGRFAM TIGR00086 smpB: SsrA-binding protein 11 153 4.0E-53 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 Alide_1949 1eca430d1865c87254ced1e22d9137ce 157 Gene3D G3DSA:2.40.280.10 3 131 6.2E-46 T 12-10-2018 IPR023620 Small protein B Alide_1949 1eca430d1865c87254ced1e22d9137ce 157 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 11 135 6.0E-58 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 Alide_1949 1eca430d1865c87254ced1e22d9137ce 157 SUPERFAMILY SSF74982 6 135 1.57E-49 T 12-10-2018 IPR023620 Small protein B Alide_1949 1eca430d1865c87254ced1e22d9137ce 157 ProSitePatterns PS01317 SsrA-binding protein. 29 41 - T 12-10-2018 IPR020081 SsrA-binding protein, conserved site Alide_1949 1eca430d1865c87254ced1e22d9137ce 157 Pfam PF01668 SmpB protein 11 153 4.9E-58 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 Alide_1949 1eca430d1865c87254ced1e22d9137ce 157 Hamap MF_00023 SsrA-binding protein [smpB]. 1 157 72.308 T 12-10-2018 IPR000037 SsrA-binding protein GO:0003723 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 ProSitePatterns PS00450 Aconitase family signature 1. 407 423 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 SUPERFAMILY SSF53732 13 592 1.57E-179 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 Pfam PF00694 Aconitase C-terminal domain 668 795 4.4E-33 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 SUPERFAMILY SSF52016 610 866 1.16E-61 T 12-10-2018 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 29 866 1.4E-285 T 12-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 Gene3D G3DSA:3.30.499.20 11 367 4.7E-133 T 12-10-2018 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 Gene3D G3DSA:3.20.19.10 636 869 1.9E-75 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 Gene3D G3DSA:1.10.1440.20 571 628 2.9E-8 T 12-10-2018 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 Pfam PF00330 Aconitase family (aconitate hydratase) 72 542 2.6E-150 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 Gene3D G3DSA:3.30.499.10 369 570 7.9E-69 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 ProSitePatterns PS01244 Aconitase family signature 2. 473 486 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 PRINTS PR00415 Aconitase family signature 275 288 1.9E-33 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 PRINTS PR00415 Aconitase family signature 199 212 1.9E-33 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 PRINTS PR00415 Aconitase family signature 142 155 1.9E-33 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 PRINTS PR00415 Aconitase family signature 166 174 1.9E-33 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 PRINTS PR00415 Aconitase family signature 289 302 1.9E-33 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 PRINTS PR00415 Aconitase family signature 368 382 1.9E-33 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 PRINTS PR00415 Aconitase family signature 213 228 1.9E-33 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 PRINTS PR00415 Aconitase family signature 473 486 1.9E-33 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3460 c99fe9c7ca8f556e94c286b059802c68 881 PRINTS PR00415 Aconitase family signature 411 422 1.9E-33 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3021 ccd3260541a459774781cb6c34b6f816 341 Pfam PF04116 Fatty acid hydroxylase superfamily 148 295 1.5E-32 T 12-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 4.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 4.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 4.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 SUPERFAMILY SSF51735 2 246 9.05E-57 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 Pfam PF00106 short chain dehydrogenase 6 196 4.1E-41 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.0E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.0E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.0E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.0E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.0E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.0E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1516 ee6f47d44f8d774d12d08231658e110d 252 Gene3D G3DSA:3.40.50.720 1 251 3.2E-72 T 12-10-2018 Alide_0683 5ddfe91fb74fc05a7546dfa8dfea85f2 629 Gene3D G3DSA:1.20.1560.10 28 347 1.8E-111 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Alide_0683 5ddfe91fb74fc05a7546dfa8dfea85f2 629 SMART SM00382 385 606 7.6E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0683 5ddfe91fb74fc05a7546dfa8dfea85f2 629 SUPERFAMILY SSF52540 442 624 9.43E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0683 5ddfe91fb74fc05a7546dfa8dfea85f2 629 Pfam PF00664 ABC transporter transmembrane region 37 310 9.3E-35 T 12-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Alide_0683 5ddfe91fb74fc05a7546dfa8dfea85f2 629 Pfam PF00005 ABC transporter 376 554 9.5E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0683 5ddfe91fb74fc05a7546dfa8dfea85f2 629 ProSitePatterns PS00211 ABC transporters family signature. 526 540 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0683 5ddfe91fb74fc05a7546dfa8dfea85f2 629 Gene3D G3DSA:3.40.50.300 352 628 3.0E-91 T 12-10-2018 Alide_0683 5ddfe91fb74fc05a7546dfa8dfea85f2 629 SUPERFAMILY SSF90123 23 347 6.02E-63 T 12-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Alide_0683 5ddfe91fb74fc05a7546dfa8dfea85f2 629 SUPERFAMILY SSF52540 358 412 5.26E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1117 e540a9125d2088fdb93437ccc5b27a77 360 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 40 322 2.4E-55 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Alide_1117 e540a9125d2088fdb93437ccc5b27a77 360 Gene3D G3DSA:3.40.190.170 31 336 2.0E-111 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Alide_1117 e540a9125d2088fdb93437ccc5b27a77 360 PIRSF PIRSF039026 1 356 2.0E-109 T 12-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like Alide_1117 e540a9125d2088fdb93437ccc5b27a77 360 Gene3D G3DSA:3.40.190.10 151 322 2.0E-111 T 12-10-2018 Alide_4326 eaabef0ec6186ca98af2511d254f4c4a 225 SMART SM00862 145 216 5.1E-26 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_4326 eaabef0ec6186ca98af2511d254f4c4a 225 SMART SM00448 1 112 5.5E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4326 eaabef0ec6186ca98af2511d254f4c4a 225 Gene3D G3DSA:3.40.50.2300 1 121 3.2E-38 T 12-10-2018 Alide_4326 eaabef0ec6186ca98af2511d254f4c4a 225 Pfam PF00072 Response regulator receiver domain 3 112 4.0E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4326 eaabef0ec6186ca98af2511d254f4c4a 225 SUPERFAMILY SSF52172 1 171 1.85E-38 T 12-10-2018 IPR011006 CheY-like superfamily Alide_4326 eaabef0ec6186ca98af2511d254f4c4a 225 Gene3D G3DSA:1.10.10.10 122 220 1.0E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4326 eaabef0ec6186ca98af2511d254f4c4a 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 2.3E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 PRINTS PR00301 70kDa heat shock protein signature 366 386 1.4E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.4E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 PRINTS PR00301 70kDa heat shock protein signature 199 209 1.4E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.4E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 PRINTS PR00301 70kDa heat shock protein signature 335 351 1.4E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.4E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 PRINTS PR00301 70kDa heat shock protein signature 389 408 1.4E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 PRINTS PR00301 70kDa heat shock protein signature 470 486 1.4E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.4E-79 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 193 206 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 Gene3D G3DSA:2.60.34.10 384 524 2.8E-65 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 Pfam PF00012 Hsp70 protein 4 604 1.3E-262 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 SUPERFAMILY SSF100920 385 541 5.76E-59 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 338 352 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 Gene3D G3DSA:1.20.1270.10 525 608 7.2E-25 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 644 36.451 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 SUPERFAMILY SSF100934 508 606 2.94E-18 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 Gene3D G3DSA:3.30.420.40 180 367 5.7E-167 T 12-10-2018 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 604 6.3E-287 T 12-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 Gene3D G3DSA:3.30.420.40 5 380 5.7E-167 T 12-10-2018 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 Gene3D G3DSA:3.90.640.10 230 317 5.7E-167 T 12-10-2018 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 SUPERFAMILY SSF53067 4 184 1.02E-64 T 12-10-2018 Alide_3126 e350c4fc0b37ce5255e9b7b7fc516fd4 647 SUPERFAMILY SSF53067 188 383 4.26E-69 T 12-10-2018 Alide_2815 ab353ecbb5cf81c27f2e546104c476c1 551 Gene3D G3DSA:1.20.210.10 87 533 5.7E-144 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2815 ab353ecbb5cf81c27f2e546104c476c1 551 SUPERFAMILY SSF81442 92 530 5.49E-87 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2815 ab353ecbb5cf81c27f2e546104c476c1 551 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 96 508 2.9E-77 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 SUPERFAMILY SSF52518 25 196 2.52E-62 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 Gene3D G3DSA:3.40.50.970 390 596 2.4E-66 T 12-10-2018 Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 219 355 5.0E-45 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 30 193 9.9E-56 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 420 568 6.1E-50 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 29 591 4.4E-250 T 12-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 Gene3D G3DSA:3.40.50.1220 213 384 1.3E-60 T 12-10-2018 Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 SUPERFAMILY SSF52518 397 592 1.84E-67 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 Gene3D G3DSA:3.40.50.970 21 204 1.7E-70 T 12-10-2018 Alide_1761 4bb71f2dbdf05b619066fcfbc9ba92f7 597 SUPERFAMILY SSF52467 212 386 6.86E-64 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_0286 cb5794cd1854060ede7a2f5aef77a59e 412 PIRSF PIRSF000139 6 412 3.0E-106 T 12-10-2018 Alide_0286 cb5794cd1854060ede7a2f5aef77a59e 412 SUPERFAMILY SSF46548 7 102 1.94E-22 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Alide_0286 cb5794cd1854060ede7a2f5aef77a59e 412 Pfam PF02754 Cysteine-rich domain 169 254 2.7E-10 T 12-10-2018 IPR004017 Cysteine-rich domain Alide_0286 cb5794cd1854060ede7a2f5aef77a59e 412 Pfam PF02754 Cysteine-rich domain 304 391 5.7E-6 T 12-10-2018 IPR004017 Cysteine-rich domain Alide_0286 cb5794cd1854060ede7a2f5aef77a59e 412 Gene3D G3DSA:1.10.1060.10 2 107 5.8E-12 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Alide_0286 cb5794cd1854060ede7a2f5aef77a59e 412 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_0286 cb5794cd1854060ede7a2f5aef77a59e 412 Pfam PF12838 4Fe-4S dicluster domain 24 89 7.9E-13 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_1632 cde1d7b5cbcef16a3c1d5a2c4f2b537f 270 Gene3D G3DSA:3.40.1640.10 25 258 2.9E-95 T 12-10-2018 Alide_1632 cde1d7b5cbcef16a3c1d5a2c4f2b537f 270 Gene3D G3DSA:3.30.2040.10 130 242 2.9E-95 T 12-10-2018 Alide_1632 cde1d7b5cbcef16a3c1d5a2c4f2b537f 270 Pfam PF07286 Protein of unknown function (DUF1445) 120 262 5.6E-67 T 12-10-2018 IPR009906 D-glutamate cyclase Alide_1632 cde1d7b5cbcef16a3c1d5a2c4f2b537f 270 PIRSF PIRSF029755 3 270 3.4E-121 T 12-10-2018 IPR016938 Uncharacterised protein family UPF0317 Alide_1632 cde1d7b5cbcef16a3c1d5a2c4f2b537f 270 SUPERFAMILY SSF160920 16 263 5.23E-113 T 12-10-2018 IPR038021 Putative hydro-lyase Alide_1632 cde1d7b5cbcef16a3c1d5a2c4f2b537f 270 Hamap MF_01830 Putative hydro-lyase . 16 270 53.422 T 12-10-2018 IPR016938 Uncharacterised protein family UPF0317 Alide_4348 9f4f21ca62424b4a2952869969386f70 328 PIRSF PIRSF017082 1 327 8.3E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4348 9f4f21ca62424b4a2952869969386f70 328 SUPERFAMILY SSF53850 124 281 2.51E-10 T 12-10-2018 Alide_4348 9f4f21ca62424b4a2952869969386f70 328 Gene3D G3DSA:3.40.190.150 32 318 1.7E-103 T 12-10-2018 Alide_4348 9f4f21ca62424b4a2952869969386f70 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 324 1.4E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4348 9f4f21ca62424b4a2952869969386f70 328 Gene3D G3DSA:3.40.190.10 129 253 1.7E-103 T 12-10-2018 Alide_2163 0e904d53606fd092e948086a6b94f7a8 275 SUPERFAMILY SSF53790 21 265 4.45E-77 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Alide_2163 0e904d53606fd092e948086a6b94f7a8 275 Gene3D G3DSA:3.40.1010.10 25 141 2.0E-41 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Alide_2163 0e904d53606fd092e948086a6b94f7a8 275 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 27 238 2.1E-47 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Alide_2163 0e904d53606fd092e948086a6b94f7a8 275 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 31 45 - T 12-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Alide_2163 0e904d53606fd092e948086a6b94f7a8 275 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 26 261 2.2E-88 T 12-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 Alide_2163 0e904d53606fd092e948086a6b94f7a8 275 Gene3D G3DSA:3.30.950.10 142 271 6.4E-47 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Alide_3257 cf7c2517b86ae4c274dc35e546be5408 173 Pfam PF00583 Acetyltransferase (GNAT) family 47 146 6.4E-14 T 12-10-2018 IPR000182 GNAT domain Alide_3257 cf7c2517b86ae4c274dc35e546be5408 173 SUPERFAMILY SSF55729 1 149 4.97E-29 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_3257 cf7c2517b86ae4c274dc35e546be5408 173 Gene3D G3DSA:3.40.630.30 4 172 3.1E-36 T 12-10-2018 Alide_2575 db8eec0b4318e5ccb9ae02e0b228b565 247 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 20 90 2.9E-19 T 12-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 Alide_2575 db8eec0b4318e5ccb9ae02e0b228b565 247 SUPERFAMILY SSF55729 83 244 3.18E-17 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_2575 db8eec0b4318e5ccb9ae02e0b228b565 247 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 110 236 1.9E-35 T 12-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 Alide_2575 db8eec0b4318e5ccb9ae02e0b228b565 247 PIRSF PIRSF037208 3 246 3.7E-88 T 12-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 Alide_2575 db8eec0b4318e5ccb9ae02e0b228b565 247 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 10 242 40.609 T 12-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 Alide_1775 ece520631847f3f24071331f764b30d0 1331 SUPERFAMILY SSF53720 664 1113 1.7E-127 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_1775 ece520631847f3f24071331f764b30d0 1331 SUPERFAMILY SSF51730 258 612 2.39E-117 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like Alide_1775 ece520631847f3f24071331f764b30d0 1331 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 144 255 9.3E-46 T 12-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Alide_1775 ece520631847f3f24071331f764b30d0 1331 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 917 928 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_1775 ece520631847f3f24071331f764b30d0 1331 Gene3D G3DSA:1.10.1220.10 10 50 3.7E-18 T 12-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Alide_1775 ece520631847f3f24071331f764b30d0 1331 Gene3D G3DSA:3.40.605.10 670 1113 1.2E-144 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_1775 ece520631847f3f24071331f764b30d0 1331 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 616 1113 1.4E-218 T 12-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Alide_1775 ece520631847f3f24071331f764b30d0 1331 Gene3D G3DSA:3.40.309.10 892 1084 1.2E-144 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_1775 ece520631847f3f24071331f764b30d0 1331 SUPERFAMILY SSF47598 2 44 1.78E-8 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Alide_1775 ece520631847f3f24071331f764b30d0 1331 PIRSF PIRSF000197 73 1331 0.0 T 12-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Alide_1775 ece520631847f3f24071331f764b30d0 1331 Pfam PF00171 Aldehyde dehydrogenase family 672 1111 3.5E-119 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_1775 ece520631847f3f24071331f764b30d0 1331 SUPERFAMILY SSF81935 87 257 8.5E-61 T 12-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 Alide_1775 ece520631847f3f24071331f764b30d0 1331 Gene3D G3DSA:3.20.20.220 213 609 5.5E-151 T 12-10-2018 Alide_1775 ece520631847f3f24071331f764b30d0 1331 Pfam PF01619 Proline dehydrogenase 267 568 1.4E-101 T 12-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 Alide_1775 ece520631847f3f24071331f764b30d0 1331 Gene3D G3DSA:3.20.20.220 87 184 1.7E-15 T 12-10-2018 Alide_1735 a1678a9e0315809cbec74e9f2420e5f2 300 Gene3D G3DSA:3.40.190.10 22 269 3.3E-85 T 12-10-2018 Alide_1735 a1678a9e0315809cbec74e9f2420e5f2 300 SUPERFAMILY SSF53850 1 266 1.93E-55 T 12-10-2018 Alide_1735 a1678a9e0315809cbec74e9f2420e5f2 300 Gene3D G3DSA:3.40.190.10 127 223 3.3E-85 T 12-10-2018 Alide_1735 a1678a9e0315809cbec74e9f2420e5f2 300 SMART SM00062 33 266 2.2E-41 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1735 a1678a9e0315809cbec74e9f2420e5f2 300 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 264 8.5E-46 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.1E-43 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 PIRSF PIRSF039144 1 112 8.3E-54 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 PRINTS PR00340 P-II protein signature 52 75 3.1E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 PRINTS PR00340 P-II protein signature 2 17 3.1E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 PRINTS PR00340 P-II protein signature 83 103 3.1E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 PRINTS PR00340 P-II protein signature 23 41 3.1E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 12-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 Gene3D G3DSA:3.30.70.120 1 106 2.8E-45 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 12-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 SUPERFAMILY SSF54913 1 112 1.33E-44 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Alide_1754 7f97ff7bbe5c480fc33fa22caa9a1287 112 SMART SM00938 4 105 6.9E-66 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 Pfam PF01330 RuvA N terminal domain 1 62 6.1E-20 T 12-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 Pfam PF07499 RuvA, C-terminal domain 147 188 1.6E-10 T 12-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 Pfam PF14520 Helix-hairpin-helix domain 72 129 2.6E-18 T 12-10-2018 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 SMART SM00278 73 92 0.21 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 SMART SM00278 108 127 0.0035 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 SUPERFAMILY SSF50249 1 63 5.71E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 189 30.773 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 188 1.8E-53 T 12-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 SUPERFAMILY SSF47781 66 133 1.75E-21 T 12-10-2018 IPR010994 RuvA domain 2-like Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 Gene3D G3DSA:1.10.150.20 67 136 4.5E-26 T 12-10-2018 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 SUPERFAMILY SSF46929 147 189 5.1E-8 T 12-10-2018 IPR036267 RuvA, C-terminal domain superfamily Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 Gene3D G3DSA:2.40.50.140 1 66 1.9E-26 T 12-10-2018 Alide_0579 c15f6d7d39af2e57db1501e0bba5b564 190 Gene3D G3DSA:1.10.8.10 143 188 4.3E-5 T 12-10-2018 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 Gene3D G3DSA:3.40.50.2300 39 149 4.7E-18 T 12-10-2018 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 Gene3D G3DSA:1.10.10.10 150 263 6.2E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 ProSitePatterns PS00622 LuxR-type HTH domain signature. 218 245 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 SUPERFAMILY SSF46894 192 263 2.58E-20 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 Pfam PF00072 Response regulator receiver domain 50 151 7.7E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 SMART SM00421 201 258 6.8E-24 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 218 234 4.3E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 234 246 4.3E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 218 4.3E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 SMART SM00448 48 161 1.3E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 SUPERFAMILY SSF52172 47 179 2.13E-22 T 12-10-2018 IPR011006 CheY-like superfamily Alide_2190 93209b1ecad26a936ba4dc1c72a84f87 264 Pfam PF00196 Bacterial regulatory proteins, luxR family 203 258 9.9E-20 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2402 027c6c4c42b1e9fc8d777aee05fe5645 328 Gene3D G3DSA:3.40.190.150 35 317 5.0E-98 T 12-10-2018 Alide_2402 027c6c4c42b1e9fc8d777aee05fe5645 328 Gene3D G3DSA:3.40.190.10 131 252 5.0E-98 T 12-10-2018 Alide_2402 027c6c4c42b1e9fc8d777aee05fe5645 328 SUPERFAMILY SSF53850 126 290 4.84E-10 T 12-10-2018 Alide_2402 027c6c4c42b1e9fc8d777aee05fe5645 328 PIRSF PIRSF017082 3 327 2.8E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2402 027c6c4c42b1e9fc8d777aee05fe5645 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 322 1.0E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1118 dad9f43444d3317b694dc8969364ac00 1565 Gene3D G3DSA:3.40.50.300 263 436 9.3E-25 T 12-10-2018 Alide_1118 dad9f43444d3317b694dc8969364ac00 1565 Pfam PF08494 DEAD/H associated 678 866 1.9E-71 T 12-10-2018 IPR013701 DEAD/H associated GO:0005524|GO:0016818 Alide_1118 dad9f43444d3317b694dc8969364ac00 1565 SMART SM00487 30 253 1.6E-33 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_1118 dad9f43444d3317b694dc8969364ac00 1565 Pfam PF06224 Winged helix DNA-binding domain 926 1088 5.4E-8 T 12-10-2018 IPR009351 Protein of unknown function DUF1006 Alide_1118 dad9f43444d3317b694dc8969364ac00 1565 Pfam PF00270 DEAD/DEAH box helicase 35 222 2.7E-24 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_1118 dad9f43444d3317b694dc8969364ac00 1565 Pfam PF00271 Helicase conserved C-terminal domain 348 415 3.5E-12 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1118 dad9f43444d3317b694dc8969364ac00 1565 SMART SM00490 303 415 4.5E-13 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1118 dad9f43444d3317b694dc8969364ac00 1565 SUPERFAMILY SSF52540 45 426 5.88E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1118 dad9f43444d3317b694dc8969364ac00 1565 Gene3D G3DSA:3.40.50.300 12 241 7.2E-55 T 12-10-2018 Alide_2922 70bff22a96887da843628d59b8e7724d 254 Gene3D G3DSA:3.40.50.300 1 251 1.1E-61 T 12-10-2018 Alide_2922 70bff22a96887da843628d59b8e7724d 254 SMART SM00382 31 252 2.3E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2922 70bff22a96887da843628d59b8e7724d 254 SUPERFAMILY SSF52540 5 252 3.45E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2922 70bff22a96887da843628d59b8e7724d 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 231 253 3.6E-9 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_2922 70bff22a96887da843628d59b8e7724d 254 Pfam PF00005 ABC transporter 23 183 5.3E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3914 6a2be456d4ef9835355201b1e2a14267 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 258 3.2E-55 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3914 6a2be456d4ef9835355201b1e2a14267 259 SUPERFAMILY SSF52096 2 258 8.79E-78 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3914 6a2be456d4ef9835355201b1e2a14267 259 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_3914 6a2be456d4ef9835355201b1e2a14267 259 Gene3D G3DSA:1.10.12.10 202 259 3.2E-20 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3914 6a2be456d4ef9835355201b1e2a14267 259 Gene3D G3DSA:3.90.226.10 1 200 7.1E-59 T 12-10-2018 Alide_3703 0e35a8342088343712f1cf87fe55059d 290 Pfam PF08478 POTRA domain, FtsQ-type 43 112 7.9E-16 T 12-10-2018 IPR013685 POTRA domain, FtsQ-type Alide_3703 0e35a8342088343712f1cf87fe55059d 290 Pfam PF03799 Cell division protein FtsQ 116 239 6.9E-17 T 12-10-2018 IPR005548 Cell division protein FtsQ/DivIB Alide_3703 0e35a8342088343712f1cf87fe55059d 290 Gene3D G3DSA:3.10.20.310 43 112 7.7E-18 T 12-10-2018 Alide_3703 0e35a8342088343712f1cf87fe55059d 290 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 13 247 20.487 T 12-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 Alide_3703 0e35a8342088343712f1cf87fe55059d 290 Gene3D G3DSA:3.40.50.11690 114 251 1.1E-26 T 12-10-2018 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 Gene3D G3DSA:3.90.20.20 18 120 1.3E-23 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 Pfam PF01025 GrpE 22 177 5.2E-50 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 SUPERFAMILY SSF58014 27 120 5.23E-24 T 12-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 Hamap MF_01151 Protein GrpE [grpE]. 2 178 19.223 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 SUPERFAMILY SSF51064 126 178 3.4E-16 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 ProSitePatterns PS01071 grpE protein signature. 134 176 - T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 PRINTS PR00773 GrpE protein signature 157 176 6.6E-26 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 PRINTS PR00773 GrpE protein signature 50 66 6.6E-26 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 PRINTS PR00773 GrpE protein signature 78 93 6.6E-26 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 PRINTS PR00773 GrpE protein signature 131 146 6.6E-26 T 12-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Alide_3125 e3669f55e08ecab7ca5b300fb3aa8928 180 Gene3D G3DSA:2.30.22.10 123 178 2.3E-20 T 12-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Alide_3409 9d16be847e699e29170cd1a54998d17d 264 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 23 246 28.673 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Alide_3409 9d16be847e699e29170cd1a54998d17d 264 SUPERFAMILY SSF51419 15 245 2.22E-73 T 12-10-2018 IPR029066 PLP-binding barrel Alide_3409 9d16be847e699e29170cd1a54998d17d 264 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 20 247 1.8E-52 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Alide_3409 9d16be847e699e29170cd1a54998d17d 264 Gene3D G3DSA:3.20.20.10 3 258 4.5E-85 T 12-10-2018 IPR029066 PLP-binding barrel Alide_3409 9d16be847e699e29170cd1a54998d17d 264 Pfam PF01168 Alanine racemase, N-terminal domain 25 247 2.1E-22 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_3409 9d16be847e699e29170cd1a54998d17d 264 PIRSF PIRSF004848 13 252 6.7E-66 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 Gene3D G3DSA:3.30.450.40 3 176 1.1E-9 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 415 424 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 SMART SM00382 222 365 1.0E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 226 239 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 SUPERFAMILY SSF55781 29 176 1.55E-11 T 12-10-2018 Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 Pfam PF00158 Sigma-54 interaction domain 202 368 4.5E-67 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 Gene3D G3DSA:1.10.10.60 484 537 7.7E-10 T 12-10-2018 Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 Gene3D G3DSA:3.40.50.300 194 372 4.2E-65 T 12-10-2018 Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 Pfam PF02954 Bacterial regulatory protein, Fis family 496 527 4.0E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 SUPERFAMILY SSF52540 201 437 9.3E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 SUPERFAMILY SSF46689 484 535 4.39E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 Gene3D G3DSA:1.10.8.60 373 437 2.8E-18 T 12-10-2018 Alide_0129 b8a26f077ffec7435d965bb3ed2d44db 537 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 288 303 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Alide_0495 8efaeb5c42a3865eb72a4ba0e96ad2d0 376 Gene3D G3DSA:3.90.1150.10 271 368 3.7E-118 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_0495 8efaeb5c42a3865eb72a4ba0e96ad2d0 376 SUPERFAMILY SSF53383 10 373 5.54E-75 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_0495 8efaeb5c42a3865eb72a4ba0e96ad2d0 376 PIRSF PIRSF000524 17 375 4.3E-44 T 12-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 Alide_0495 8efaeb5c42a3865eb72a4ba0e96ad2d0 376 Pfam PF00266 Aminotransferase class-V 22 297 8.4E-17 T 12-10-2018 IPR000192 Aminotransferase class V domain Alide_0495 8efaeb5c42a3865eb72a4ba0e96ad2d0 376 Gene3D G3DSA:3.40.640.10 38 270 3.7E-118 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 Gene3D G3DSA:3.30.420.40 13 332 1.1E-128 T 12-10-2018 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 1.2E-152 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 Gene3D G3DSA:3.30.420.40 159 322 1.1E-128 T 12-10-2018 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 SUPERFAMILY SSF53067 154 342 3.7E-48 T 12-10-2018 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 Gene3D G3DSA:3.90.640.10 191 264 1.1E-128 T 12-10-2018 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 192 212 5.2E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 137 156 5.2E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 73 96 5.2E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 53 71 5.2E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 5.2E-61 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 SUPERFAMILY SSF53067 9 153 1.77E-36 T 12-10-2018 Alide_0376 6ab54812c94b7cf90169d52c181ad503 347 Pfam PF06723 MreB/Mbl protein 11 339 7.0E-146 T 12-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Alide_4606 2cc52e53bb4f05ba6665d934b2e741b2 186 Pfam PF06778 Chlorite dismutase 39 179 1.5E-9 T 12-10-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase Alide_4606 2cc52e53bb4f05ba6665d934b2e741b2 186 SUPERFAMILY SSF54909 42 181 1.39E-18 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_4606 2cc52e53bb4f05ba6665d934b2e741b2 186 Gene3D G3DSA:3.30.70.3420 4 186 1.2E-67 T 12-10-2018 Alide_3114 ccf5b8dea02cd0f541ae085beda99f12 206 SMART SM00867 41 201 4.7E-40 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Alide_3114 ccf5b8dea02cd0f541ae085beda99f12 206 Gene3D G3DSA:2.40.128.110 43 202 9.2E-38 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Alide_3114 ccf5b8dea02cd0f541ae085beda99f12 206 Pfam PF04264 YceI-like domain 44 200 3.8E-29 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Alide_3114 ccf5b8dea02cd0f541ae085beda99f12 206 SUPERFAMILY SSF101874 46 200 6.02E-40 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Alide_1182 1de44dd5f86ec80c14e3201ae1926322 229 Gene3D G3DSA:1.10.10.10 94 177 3.6E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1182 1de44dd5f86ec80c14e3201ae1926322 229 Hamap MF_01584 UPF0502 protein YceH [yceH]. 10 215 32.152 T 12-10-2018 IPR007432 Protein of unknown function DUF480 Alide_1182 1de44dd5f86ec80c14e3201ae1926322 229 Gene3D G3DSA:1.10.10.10 3 93 9.7E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1182 1de44dd5f86ec80c14e3201ae1926322 229 SUPERFAMILY SSF46785 91 176 2.5E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1182 1de44dd5f86ec80c14e3201ae1926322 229 Pfam PF04337 Protein of unknown function, DUF480 10 159 3.3E-54 T 12-10-2018 IPR007432 Protein of unknown function DUF480 Alide_1182 1de44dd5f86ec80c14e3201ae1926322 229 SUPERFAMILY SSF46785 6 87 2.31E-28 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3830 4ac2680a8698e86824f23c1b5eef912a 396 SUPERFAMILY SSF53901 274 395 2.54E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3830 4ac2680a8698e86824f23c1b5eef912a 396 PIRSF PIRSF000429 2 396 6.9E-120 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3830 4ac2680a8698e86824f23c1b5eef912a 396 ProSitePatterns PS00099 Thiolases active site. 377 390 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 Alide_3830 4ac2680a8698e86824f23c1b5eef912a 396 SUPERFAMILY SSF53901 8 272 1.78E-75 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3830 4ac2680a8698e86824f23c1b5eef912a 396 Gene3D G3DSA:3.40.47.10 130 393 8.1E-143 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3830 4ac2680a8698e86824f23c1b5eef912a 396 Pfam PF00108 Thiolase, N-terminal domain 8 266 1.6E-85 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_3830 4ac2680a8698e86824f23c1b5eef912a 396 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 394 2.0E-128 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3830 4ac2680a8698e86824f23c1b5eef912a 396 Pfam PF02803 Thiolase, C-terminal domain 274 394 1.7E-45 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_3830 4ac2680a8698e86824f23c1b5eef912a 396 Gene3D G3DSA:3.40.47.10 10 279 8.1E-143 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1985 8b1b3904c3a5abb278433d5243217e0d 457 Pfam PF16325 Peptidase family U32 C-terminal domain 375 453 6.4E-21 T 12-10-2018 IPR032525 Peptidase family U32, C-terminal Alide_1985 8b1b3904c3a5abb278433d5243217e0d 457 ProSitePatterns PS01276 Peptidase family U32 signature. 164 182 - T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Alide_1985 8b1b3904c3a5abb278433d5243217e0d 457 Pfam PF01136 Peptidase family U32 79 359 6.4E-96 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Alide_1985 8b1b3904c3a5abb278433d5243217e0d 457 Gene3D G3DSA:2.40.30.10 372 454 7.6E-10 T 12-10-2018 Alide_1142 0af626aaef699f30c73403b4a17df149 461 SUPERFAMILY SSF48557 3 461 3.93E-155 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 Alide_1142 0af626aaef699f30c73403b4a17df149 461 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Alide_1142 0af626aaef699f30c73403b4a17df149 461 Pfam PF10415 Fumarase C C-terminus 407 460 4.3E-25 T 12-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_1142 0af626aaef699f30c73403b4a17df149 461 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 460 2.1E-230 T 12-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_1142 0af626aaef699f30c73403b4a17df149 461 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 6.4E-34 T 12-10-2018 IPR000362 Fumarate lyase family Alide_1142 0af626aaef699f30c73403b4a17df149 461 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 6.4E-34 T 12-10-2018 IPR000362 Fumarate lyase family Alide_1142 0af626aaef699f30c73403b4a17df149 461 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 6.4E-34 T 12-10-2018 IPR000362 Fumarate lyase family Alide_1142 0af626aaef699f30c73403b4a17df149 461 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 6.4E-34 T 12-10-2018 IPR000362 Fumarate lyase family Alide_1142 0af626aaef699f30c73403b4a17df149 461 Gene3D G3DSA:1.10.275.10 4 137 9.1E-58 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal Alide_1142 0af626aaef699f30c73403b4a17df149 461 Gene3D G3DSA:1.20.200.10 138 406 2.0E-115 T 12-10-2018 Alide_1142 0af626aaef699f30c73403b4a17df149 461 Gene3D G3DSA:1.10.40.30 407 461 2.5E-29 T 12-10-2018 Alide_1142 0af626aaef699f30c73403b4a17df149 461 Pfam PF00206 Lyase 11 341 1.0E-112 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal Alide_1142 0af626aaef699f30c73403b4a17df149 461 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 90.617 T 12-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 SUPERFAMILY SSF81342 17 212 3.61E-32 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 307 379 1.3E-12 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 Pfam PF00175 Oxidoreductase NAD-binding domain 506 610 3.1E-21 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 Gene3D G3DSA:1.20.810.10 6 212 1.0E-43 T 12-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 Gene3D G3DSA:3.40.50.80 498 631 2.1E-32 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 Gene3D G3DSA:2.40.30.10 400 497 7.0E-27 T 12-10-2018 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 PRINTS PR00410 Phenol hydroxylase reductase family signature 505 524 2.4E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 PRINTS PR00410 Phenol hydroxylase reductase family signature 530 539 2.4E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 PRINTS PR00410 Phenol hydroxylase reductase family signature 430 442 2.4E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 PRINTS PR00410 Phenol hydroxylase reductase family signature 490 499 2.4E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 PRINTS PR00410 Phenol hydroxylase reductase family signature 446 453 2.4E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 PRINTS PR00410 Phenol hydroxylase reductase family signature 597 605 2.4E-20 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 SUPERFAMILY SSF63380 401 496 5.73E-27 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 Pfam PF00033 Cytochrome b/b6/petB 26 202 1.0E-16 T 12-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 SUPERFAMILY SSF52343 498 630 1.57E-38 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 Gene3D G3DSA:3.10.20.30 294 388 1.5E-23 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 335 343 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 Pfam PF00970 Oxidoreductase FAD-binding domain 403 495 1.8E-17 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Alide_3615 fb4273ef4c387b8f8ef069f0434c1572 642 SUPERFAMILY SSF54292 286 387 7.87E-24 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_3361 4db36cbe7ab9dbd37e086b9b762e8435 225 SMART SM00116 95 143 0.029 T 12-10-2018 IPR000644 CBS domain Alide_3361 4db36cbe7ab9dbd37e086b9b762e8435 225 SMART SM00116 168 216 3.4E-11 T 12-10-2018 IPR000644 CBS domain Alide_3361 4db36cbe7ab9dbd37e086b9b762e8435 225 Gene3D G3DSA:3.10.580.10 49 142 1.1E-12 T 12-10-2018 Alide_3361 4db36cbe7ab9dbd37e086b9b762e8435 225 Pfam PF00571 CBS domain 88 142 4.2E-8 T 12-10-2018 IPR000644 CBS domain Alide_3361 4db36cbe7ab9dbd37e086b9b762e8435 225 Pfam PF00571 CBS domain 162 216 2.1E-11 T 12-10-2018 IPR000644 CBS domain Alide_3361 4db36cbe7ab9dbd37e086b9b762e8435 225 SUPERFAMILY SSF54631 85 216 3.42E-29 T 12-10-2018 Alide_3361 4db36cbe7ab9dbd37e086b9b762e8435 225 Gene3D G3DSA:3.10.580.10 143 218 5.3E-14 T 12-10-2018 Alide_3273 e0592626a0a6cf2a470efda3fc28d564 410 Gene3D G3DSA:3.90.1150.10 22 398 4.1E-132 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_3273 e0592626a0a6cf2a470efda3fc28d564 410 Pfam PF00155 Aminotransferase class I and II 34 395 1.8E-46 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_3273 e0592626a0a6cf2a470efda3fc28d564 410 Gene3D G3DSA:3.40.640.10 53 294 4.1E-132 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3273 e0592626a0a6cf2a470efda3fc28d564 410 SUPERFAMILY SSF53383 5 400 1.28E-96 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3979 1cbd318312885d24bf196dc65f33572c 290 Gene3D G3DSA:1.20.120.1780 171 289 3.3E-8 T 12-10-2018 Alide_3979 1cbd318312885d24bf196dc65f33572c 290 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 67 89 - T 12-10-2018 IPR030470 UbiA prenyltransferase conserved site Alide_3979 1cbd318312885d24bf196dc65f33572c 290 Gene3D G3DSA:1.10.357.140 25 170 1.2E-38 T 12-10-2018 Alide_3979 1cbd318312885d24bf196dc65f33572c 290 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 11 287 1.4E-85 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 Alide_3979 1cbd318312885d24bf196dc65f33572c 290 Pfam PF01040 UbiA prenyltransferase family 28 269 2.9E-56 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Alide_3979 1cbd318312885d24bf196dc65f33572c 290 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 26.257 T 12-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 508 643 1.2E-12 T 12-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 Gene3D G3DSA:3.40.50.1000 12 198 1.4E-45 T 12-10-2018 IPR023214 HAD superfamily Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 Gene3D G3DSA:1.10.150.240 22 93 1.4E-45 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 61 193 2.6E-18 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 192 1.7E-28 T 12-10-2018 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 SUPERFAMILY SSF48179 514 706 2.96E-20 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 SUPERFAMILY SSF56784 8 219 7.05E-44 T 12-10-2018 IPR036412 HAD-like superfamily Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 182 195 5.9E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 5.9E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 5.9E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 5.9E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 5.9E-9 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 Gene3D G3DSA:3.40.50.720 245 451 4.8E-15 T 12-10-2018 Alide_1307 259d91e4bdd6aeb6ed5294d30256ba65 724 Gene3D G3DSA:1.10.1040.10 520 680 1.6E-30 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_1184 647eb7b786fded04c2d025aec5e51154 439 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 134 224 5.2E-8 T 12-10-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 Alide_1184 647eb7b786fded04c2d025aec5e51154 439 Gene3D G3DSA:3.40.50.150 129 438 2.0E-84 T 12-10-2018 Alide_1184 647eb7b786fded04c2d025aec5e51154 439 Pfam PF01189 16S rRNA methyltransferase RsmB/F 229 435 4.4E-49 T 12-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 Alide_1184 647eb7b786fded04c2d025aec5e51154 439 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 309 321 1.3E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_1184 647eb7b786fded04c2d025aec5e51154 439 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 359 375 1.3E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_1184 647eb7b786fded04c2d025aec5e51154 439 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 421 438 1.3E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_1184 647eb7b786fded04c2d025aec5e51154 439 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 211 225 1.3E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_1184 647eb7b786fded04c2d025aec5e51154 439 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 240 250 1.3E-29 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_1184 647eb7b786fded04c2d025aec5e51154 439 SUPERFAMILY SSF53335 130 438 4.96E-70 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2488 0e03e6e9ac702d8d88c579d2435ac2b2 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 291 9.4E-28 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_2488 0e03e6e9ac702d8d88c579d2435ac2b2 293 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 29 292 2.2E-86 T 12-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 Alide_2488 0e03e6e9ac702d8d88c579d2435ac2b2 293 Gene3D G3DSA:1.10.3720.10 77 293 6.5E-30 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2488 0e03e6e9ac702d8d88c579d2435ac2b2 293 SUPERFAMILY SSF161098 33 285 8.6E-35 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 Pfam PF13432 Tetratricopeptide repeat 271 323 4.3E-7 T 12-10-2018 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 Pfam PF13432 Tetratricopeptide repeat 448 513 9.3E-7 T 12-10-2018 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 Gene3D G3DSA:1.25.40.10 331 586 7.8E-33 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 SUPERFAMILY SSF48452 419 579 4.74E-22 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 Gene3D G3DSA:1.25.40.10 237 330 6.3E-7 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 SMART SM00028 298 331 0.15 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 SMART SM00028 444 477 480.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 SMART SM00028 546 579 0.93 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 SMART SM00028 199 232 3.4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 SMART SM00028 478 512 160.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 Gene3D G3DSA:1.25.40.10 55 236 2.8E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 SUPERFAMILY SSF48452 198 340 6.96E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0985 8ead85779c48a34fbc6d0d51d5d7ffb6 593 Pfam PF14559 Tetratricopeptide repeat 354 415 7.0E-7 T 12-10-2018 Alide_3517 d1845f9c2cab293dd1574b22ed2d1572 293 PRINTS PR01438 Universal stress protein signature 3 21 2.8E-6 T 12-10-2018 IPR006015 Universal stress protein A Alide_3517 d1845f9c2cab293dd1574b22ed2d1572 293 PRINTS PR01438 Universal stress protein signature 105 127 2.8E-6 T 12-10-2018 IPR006015 Universal stress protein A Alide_3517 d1845f9c2cab293dd1574b22ed2d1572 293 PRINTS PR01438 Universal stress protein signature 87 99 2.8E-6 T 12-10-2018 IPR006015 Universal stress protein A Alide_3517 d1845f9c2cab293dd1574b22ed2d1572 293 SUPERFAMILY SSF52402 134 267 2.26E-13 T 12-10-2018 Alide_3517 d1845f9c2cab293dd1574b22ed2d1572 293 Pfam PF00582 Universal stress protein family 4 127 1.2E-11 T 12-10-2018 IPR006016 UspA Alide_3517 d1845f9c2cab293dd1574b22ed2d1572 293 Pfam PF00582 Universal stress protein family 134 265 1.3E-7 T 12-10-2018 IPR006016 UspA Alide_3517 d1845f9c2cab293dd1574b22ed2d1572 293 SUPERFAMILY SSF52402 2 128 3.1E-23 T 12-10-2018 Alide_3517 d1845f9c2cab293dd1574b22ed2d1572 293 Gene3D G3DSA:3.40.50.620 1 128 3.4E-20 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3517 d1845f9c2cab293dd1574b22ed2d1572 293 Gene3D G3DSA:3.40.50.620 131 268 1.0E-10 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2487 4fa4a529f33961a816068ebbe4951925 262 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2487 4fa4a529f33961a816068ebbe4951925 262 Gene3D G3DSA:3.40.50.300 15 260 3.5E-66 T 12-10-2018 Alide_2487 4fa4a529f33961a816068ebbe4951925 262 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 16 262 9.7E-120 T 12-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 Alide_2487 4fa4a529f33961a816068ebbe4951925 262 SMART SM00382 40 250 5.0E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2487 4fa4a529f33961a816068ebbe4951925 262 SUPERFAMILY SSF52540 14 248 2.08E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2487 4fa4a529f33961a816068ebbe4951925 262 Pfam PF00005 ABC transporter 31 186 4.2E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4217 9ced5eef337bcef2b5a15dd24cfa2948 345 Gene3D G3DSA:3.40.190.10 136 320 3.8E-84 T 12-10-2018 Alide_4217 9ced5eef337bcef2b5a15dd24cfa2948 345 Gene3D G3DSA:3.40.190.10 35 307 3.8E-84 T 12-10-2018 Alide_4217 9ced5eef337bcef2b5a15dd24cfa2948 345 SUPERFAMILY SSF53850 29 335 1.75E-69 T 12-10-2018 Alide_4217 9ced5eef337bcef2b5a15dd24cfa2948 345 PIRSF PIRSF002825 5 339 1.4E-91 T 12-10-2018 IPR026045 Ferric binding protein Alide_4217 9ced5eef337bcef2b5a15dd24cfa2948 345 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 15 343 6.7E-161 T 12-10-2018 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative Alide_4217 9ced5eef337bcef2b5a15dd24cfa2948 345 Pfam PF13343 Bacterial extracellular solute-binding protein 80 310 4.2E-29 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 546 561 2.5E-68 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 390 404 2.5E-68 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 122 144 2.5E-68 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 272 2.5E-68 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 476 497 2.5E-68 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 170 2.5E-68 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 323 2.5E-68 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 568 588 2.5E-68 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 440 2.5E-68 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 480 593 1.5E-31 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 Gene3D G3DSA:3.50.50.60 275 399 1.5E-114 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 156 166 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 278 3.7E-37 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 389 405 3.7E-37 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 298 316 3.7E-37 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 418 440 3.7E-37 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 123 142 3.7E-37 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 Pfam PF00364 Biotin-requiring enzyme 5 76 7.3E-23 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 Gene3D G3DSA:2.40.50.100 5 83 6.8E-21 T 12-10-2018 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 PIRSF PIRSF000350 39 602 1.9E-68 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 Gene3D G3DSA:3.30.390.30 479 605 4.0E-46 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 SUPERFAMILY SSF51905 118 464 1.17E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 SUPERFAMILY SSF51230 2 96 5.76E-24 T 12-10-2018 IPR011053 Single hybrid motif Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 SUPERFAMILY SSF55424 476 603 5.5E-37 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 Gene3D G3DSA:3.50.50.60 122 458 1.5E-114 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 121 599 3.0E-137 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 122 453 8.7E-55 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_2228 02a95fb6314401b93f92902be0bdcff1 609 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 SUPERFAMILY SSF52096 5 291 2.03E-63 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_1563 384a001e13118539d67b37e6a3f22f01 699 Gene3D G3DSA:3.40.50.720 296 482 7.0E-67 T 12-10-2018 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 Gene3D G3DSA:3.90.226.10 2 295 2.3E-85 T 12-10-2018 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 480 572 7.7E-23 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 608 696 5.4E-6 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 SUPERFAMILY SSF48179 602 698 1.62E-20 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 162 1.6E-36 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 SUPERFAMILY SSF48179 479 621 1.02E-25 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 SUPERFAMILY SSF51735 296 475 3.74E-58 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1563 384a001e13118539d67b37e6a3f22f01 699 Gene3D G3DSA:1.10.1040.50 483 698 4.4E-76 T 12-10-2018 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 299 475 9.2E-63 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_1563 384a001e13118539d67b37e6a3f22f01 699 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 92 112 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_2173 5ebd175a017504056ec71dec32dd9a74 154 Pfam PF04364 DNA polymerase III chi subunit, HolC 10 142 4.1E-35 T 12-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 Alide_2173 5ebd175a017504056ec71dec32dd9a74 154 Gene3D G3DSA:3.40.50.10110 8 147 4.0E-31 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily Alide_2173 5ebd175a017504056ec71dec32dd9a74 154 SUPERFAMILY SSF102400 10 147 4.58E-31 T 12-10-2018 IPR036768 DNA polymerase III subunit chi superfamily Alide_0710 31e896212e7eba018d57132a736d2fa4 124 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 102 119 - T 12-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 Alide_0710 31e896212e7eba018d57132a736d2fa4 124 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 121 37.052 T 12-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 Alide_0710 31e896212e7eba018d57132a736d2fa4 124 Pfam PF01521 Iron-sulphur cluster biosynthesis 16 116 1.7E-19 T 12-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 Alide_0710 31e896212e7eba018d57132a736d2fa4 124 Gene3D G3DSA:2.60.300.12 16 124 9.7E-35 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Alide_0710 31e896212e7eba018d57132a736d2fa4 124 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 17 121 1.2E-38 T 12-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 Alide_0710 31e896212e7eba018d57132a736d2fa4 124 SUPERFAMILY SSF89360 13 107 2.35E-31 T 12-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 Alide_0903 f9c53804c96098c874a87dbf76522946 199 PRINTS PR00162 Rieske 2Fe-2S subunit signature 121 132 1.8E-7 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Alide_0903 f9c53804c96098c874a87dbf76522946 199 PRINTS PR00162 Rieske 2Fe-2S subunit signature 153 165 1.8E-7 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Alide_0903 f9c53804c96098c874a87dbf76522946 199 PRINTS PR00162 Rieske 2Fe-2S subunit signature 166 178 1.8E-7 T 12-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Alide_0903 f9c53804c96098c874a87dbf76522946 199 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 194 1.6E-63 T 12-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Alide_0903 f9c53804c96098c874a87dbf76522946 199 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 3 39 2.6E-6 T 12-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 Alide_0903 f9c53804c96098c874a87dbf76522946 199 Pfam PF00355 Rieske [2Fe-2S] domain 58 181 2.2E-11 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Alide_0903 f9c53804c96098c874a87dbf76522946 199 SUPERFAMILY SSF50022 29 193 8.64E-40 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Alide_0903 f9c53804c96098c874a87dbf76522946 199 Gene3D G3DSA:2.102.10.10 42 194 2.4E-47 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Alide_2981 6fd50915c115da55d1db9798b7422334 414 Gene3D G3DSA:3.30.1540.10 245 337 1.9E-123 T 12-10-2018 Alide_2981 6fd50915c115da55d1db9798b7422334 414 Gene3D G3DSA:3.40.50.10540 6 408 1.9E-123 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2981 6fd50915c115da55d1db9798b7422334 414 SUPERFAMILY SSF89796 5 414 1.24E-119 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2981 6fd50915c115da55d1db9798b7422334 414 Pfam PF02515 CoA-transferase family III 7 388 9.3E-111 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2771 5a73459c8246e2fccaa1d1748bc8ffd1 200 SUPERFAMILY SSF51182 1 166 6.4E-54 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_2771 5a73459c8246e2fccaa1d1748bc8ffd1 200 Pfam PF05962 HutD 10 165 2.5E-51 T 12-10-2018 IPR010282 Uncharacterised protein family HutD/Ves Alide_2771 5a73459c8246e2fccaa1d1748bc8ffd1 200 Gene3D G3DSA:2.60.120.10 116 164 1.0E-43 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_2771 5a73459c8246e2fccaa1d1748bc8ffd1 200 Gene3D G3DSA:2.60.120.10 10 115 1.0E-43 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1854 0cef7ad850ac3684099f7e1486b86fe2 369 Pfam PF00266 Aminotransferase class-V 5 357 1.2E-46 T 12-10-2018 IPR000192 Aminotransferase class V domain Alide_1854 0cef7ad850ac3684099f7e1486b86fe2 369 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 368 47.548 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Alide_1854 0cef7ad850ac3684099f7e1486b86fe2 369 Gene3D G3DSA:3.40.640.10 17 258 1.1E-87 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_1854 0cef7ad850ac3684099f7e1486b86fe2 369 Gene3D G3DSA:3.90.1150.10 259 368 7.6E-41 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_1854 0cef7ad850ac3684099f7e1486b86fe2 369 SUPERFAMILY SSF53383 3 366 1.68E-110 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_1854 0cef7ad850ac3684099f7e1486b86fe2 369 PIRSF PIRSF000525 1 369 2.0E-142 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Alide_1854 0cef7ad850ac3684099f7e1486b86fe2 369 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 366 5.8E-144 T 12-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 Alide_1854 0cef7ad850ac3684099f7e1486b86fe2 369 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 191 210 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Alide_3348 885d694e04818bf38336ba7fa34904e0 591 Gene3D G3DSA:1.10.287.950 211 514 6.9E-92 T 12-10-2018 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 SMART SM00283 265 512 3.4E-94 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 SMART SM00304 212 264 2.0E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 SUPERFAMILY SSF58104 232 513 1.44E-74 T 12-10-2018 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 3.3E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 3.3E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 3.3E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 3.3E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 3.3E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 480 1.8E-53 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3348 885d694e04818bf38336ba7fa34904e0 591 Pfam PF00672 HAMP domain 212 260 2.6E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Pfam PF00563 EAL domain 950 1185 9.6E-76 T 12-10-2018 IPR001633 EAL domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Pfam PF13188 PAS domain 178 240 1.1E-6 T 12-10-2018 IPR000014 PAS domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Gene3D G3DSA:3.30.450.20 640 766 1.8E-26 T 12-10-2018 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SMART SM00267 757 934 1.0E-61 T 12-10-2018 IPR000160 GGDEF domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SMART SM00065 310 479 0.0034 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SMART SM00065 496 645 0.33 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Gene3D G3DSA:3.20.20.450 948 1198 1.3E-101 T 12-10-2018 IPR035919 EAL domain superfamily Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Pfam PF13185 GAF domain 323 470 3.5E-17 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Pfam PF00989 PAS fold 649 750 2.1E-15 T 12-10-2018 IPR013767 PAS fold GO:0006355 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SMART SM00086 715 757 2.7E-5 T 12-10-2018 IPR001610 PAC motif Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SMART SM00086 255 295 460.0 T 12-10-2018 IPR001610 PAC motif Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SUPERFAMILY SSF55073 773 936 5.49E-49 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 765 933 3.1E-43 T 12-10-2018 IPR000160 GGDEF domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SMART SM00091 645 711 1.9E-11 T 12-10-2018 IPR000014 PAS domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SMART SM00091 177 244 1.8E-5 T 12-10-2018 IPR000014 PAS domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SUPERFAMILY SSF55785 164 293 2.23E-16 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SUPERFAMILY SSF55781 500 647 1.16E-7 T 12-10-2018 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 649 763 8.1E-18 T 12-10-2018 IPR000014 PAS domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 174 302 2.4E-17 T 12-10-2018 IPR000014 PAS domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Pfam PF00990 Diguanylate cyclase, GGDEF domain 768 929 1.0E-48 T 12-10-2018 IPR000160 GGDEF domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SUPERFAMILY SSF55785 656 766 4.47E-22 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Gene3D G3DSA:3.30.450.20 169 293 1.5E-16 T 12-10-2018 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SUPERFAMILY SSF141868 950 1198 1.26E-90 T 12-10-2018 IPR035919 EAL domain superfamily Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Gene3D G3DSA:3.30.450.40 22 168 1.8E-5 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SMART SM00052 944 1190 7.4E-119 T 12-10-2018 IPR001633 EAL domain Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Gene3D G3DSA:3.30.70.270 767 947 5.1E-62 T 12-10-2018 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 Gene3D G3DSA:3.30.450.40 297 484 1.0E-27 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SUPERFAMILY SSF55781 326 482 5.02E-22 T 12-10-2018 Alide_0020 b6894c227e8ba11c56236cea4379c56f 1206 SUPERFAMILY SSF55781 38 172 1.22E-6 T 12-10-2018 Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 SMART SM00091 150 215 6.9E-11 T 12-10-2018 IPR000014 PAS domain Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 SMART SM00091 21 88 4.0 T 12-10-2018 IPR000014 PAS domain Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 SUPERFAMILY SSF55785 40 147 1.01E-11 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 146 263 2.4E-22 T 12-10-2018 IPR000014 PAS domain Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 19 144 1.4E-6 T 12-10-2018 IPR000014 PAS domain Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 SMART SM00052 439 685 2.4E-110 T 12-10-2018 IPR001633 EAL domain Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 Pfam PF00990 Diguanylate cyclase, GGDEF domain 268 424 1.7E-44 T 12-10-2018 IPR000160 GGDEF domain Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 Pfam PF13426 PAS domain 167 256 1.6E-15 T 12-10-2018 IPR000014 PAS domain Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 Gene3D G3DSA:3.30.450.20 148 266 2.1E-23 T 12-10-2018 Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 SUPERFAMILY SSF141868 444 692 1.09E-85 T 12-10-2018 IPR035919 EAL domain superfamily Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 SMART SM00267 257 429 4.5E-61 T 12-10-2018 IPR000160 GGDEF domain Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 Pfam PF00563 EAL domain 447 680 9.6E-74 T 12-10-2018 IPR001633 EAL domain Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 Gene3D G3DSA:3.30.450.20 13 147 1.7E-19 T 12-10-2018 Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 Gene3D G3DSA:3.30.70.270 267 443 2.4E-54 T 12-10-2018 Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 SUPERFAMILY SSF55785 135 255 1.68E-25 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 SUPERFAMILY SSF55073 273 431 7.06E-46 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 Pfam PF08448 PAS fold 28 138 4.1E-13 T 12-10-2018 IPR013656 PAS fold-4 Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 Gene3D G3DSA:3.20.20.450 444 692 8.3E-100 T 12-10-2018 IPR035919 EAL domain superfamily Alide_0568 8c902e8745c224cc91b0f34bf6167077 698 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 267 425 5.2E-40 T 12-10-2018 IPR000160 GGDEF domain Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Pfam PF14559 Tetratricopeptide repeat 483 547 7.2E-6 T 12-10-2018 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Pfam PF14559 Tetratricopeptide repeat 858 909 1.4E-7 T 12-10-2018 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 29 62 240.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 506 539 350.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 472 505 21.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 643 676 57.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 63 96 110.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 813 845 200.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 779 812 140.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 132 165 130.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 303 336 43.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 200 234 39.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 269 302 14.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 371 404 0.47 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 609 642 20.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SMART SM00028 711 744 43.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SUPERFAMILY SSF48452 173 429 1.71E-25 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SUPERFAMILY SSF48452 778 910 5.15E-16 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 TIGRFAM TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein 13 907 3.7E-221 T 12-10-2018 IPR014266 PEP-CTERM system TPR-repeat lipoprotein, putative Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Pfam PF13432 Tetratricopeptide repeat 581 643 4.1E-5 T 12-10-2018 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Pfam PF13432 Tetratricopeptide repeat 35 91 3.3E-7 T 12-10-2018 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Pfam PF13432 Tetratricopeptide repeat 683 742 0.016 T 12-10-2018 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SUPERFAMILY SSF48452 27 234 2.24E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Gene3D G3DSA:1.25.40.10 441 685 1.1E-33 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Gene3D G3DSA:1.25.40.10 98 440 1.2E-43 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Gene3D G3DSA:1.25.40.10 686 926 2.0E-26 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Gene3D G3DSA:1.25.40.10 12 97 2.2E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 SUPERFAMILY SSF48452 431 708 1.52E-24 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0771 16bfec9eb4cd563f7bfb9381ec6e613a 926 Pfam PF13429 Tetratricopeptide repeat 170 425 1.9E-6 T 12-10-2018 Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.0E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 4.0E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 4.0E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 4.0E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 4.0E-27 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 9.9E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 9.9E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 9.9E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 Gene3D G3DSA:3.40.50.720 6 254 6.6E-57 T 12-10-2018 Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 184 0.006 T 12-10-2018 Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 Pfam PF00106 short chain dehydrogenase 8 197 3.8E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4395 d45a308cfd1d01a92aa3944fd15ae065 264 SUPERFAMILY SSF51735 7 250 1.41E-60 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3643 8e49fa02456cfa8ff9647472c3739fc4 481 PIRSF PIRSF037227 1 471 1.7E-191 T 12-10-2018 IPR017145 Aminobenzoyl-glutamate utilization protein B Alide_3643 8e49fa02456cfa8ff9647472c3739fc4 481 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 421 1.5E-77 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_3643 8e49fa02456cfa8ff9647472c3739fc4 481 Pfam PF07687 Peptidase dimerisation domain 185 277 8.5E-5 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_3643 8e49fa02456cfa8ff9647472c3739fc4 481 SUPERFAMILY SSF53187 3 438 1.4E-41 T 12-10-2018 Alide_3643 8e49fa02456cfa8ff9647472c3739fc4 481 Gene3D G3DSA:3.30.70.360 183 300 6.3E-82 T 12-10-2018 Alide_3643 8e49fa02456cfa8ff9647472c3739fc4 481 SUPERFAMILY SSF55031 187 289 9.94E-20 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_3643 8e49fa02456cfa8ff9647472c3739fc4 481 Gene3D G3DSA:3.40.630.10 18 330 6.3E-82 T 12-10-2018 Alide_3859 22bf23f9c48da03fd10cd44012186f23 99 Gene3D G3DSA:1.20.58.380 3 91 5.6E-30 T 12-10-2018 Alide_3859 22bf23f9c48da03fd10cd44012186f23 99 Pfam PF05400 Flagellar protein FliT 19 90 2.0E-18 T 12-10-2018 IPR008622 Flagellar protein FliT Alide_1717 8c5273210e7b2d434f4ed5566ca4a842 314 Gene3D G3DSA:3.90.226.10 23 195 1.2E-13 T 12-10-2018 Alide_1717 8c5273210e7b2d434f4ed5566ca4a842 314 SUPERFAMILY SSF52096 29 190 2.19E-10 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_1717 8c5273210e7b2d434f4ed5566ca4a842 314 Pfam PF07007 Lysozyme inhibitor LprI 217 262 1.8E-5 T 12-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 4.9E-27 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 PIRSF PIRSF016578 6 109 0.0071 T 12-10-2018 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 PIRSF PIRSF016578 236 364 1.4E-9 T 12-10-2018 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 PIRSF PIRSF016578 140 181 950.0 T 12-10-2018 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 SUPERFAMILY SSF47203 230 385 1.61E-46 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 Gene3D G3DSA:1.10.540.10 1 120 3.0E-32 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 Gene3D G3DSA:1.20.140.10 238 385 6.3E-41 T 12-10-2018 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 SUPERFAMILY SSF56645 1 245 3.4E-65 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 2.5E-18 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 361 3.1E-35 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0119 cf15bd06960553d993fd8344f5d00e10 387 Gene3D G3DSA:2.40.110.10 122 237 1.8E-31 T 12-10-2018 Alide_2169 05884f1b440da822ec367f61da61e92e 126 Gene3D G3DSA:3.40.50.1400 3 124 4.2E-33 T 12-10-2018 Alide_2169 05884f1b440da822ec367f61da61e92e 126 Pfam PF01903 CbiX 13 117 2.1E-29 T 12-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 Alide_2169 05884f1b440da822ec367f61da61e92e 126 SUPERFAMILY SSF53800 6 121 1.06E-32 T 12-10-2018 Alide_0878 89f2962c078d692ee85d437b306269ee 210 SUPERFAMILY SSF54211 103 193 6.83E-34 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0878 89f2962c078d692ee85d437b306269ee 210 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 46 189 4.6E-64 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Alide_0878 89f2962c078d692ee85d437b306269ee 210 Gene3D G3DSA:3.30.230.40 105 210 2.2E-38 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Alide_0878 89f2962c078d692ee85d437b306269ee 210 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 171 183 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Alide_0878 89f2962c078d692ee85d437b306269ee 210 SUPERFAMILY SSF54211 17 101 5.18E-34 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0878 89f2962c078d692ee85d437b306269ee 210 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 17 210 42.734 T 12-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Alide_0878 89f2962c078d692ee85d437b306269ee 210 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 76 89 - T 12-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Alide_0878 89f2962c078d692ee85d437b306269ee 210 Gene3D G3DSA:3.30.230.40 7 104 3.5E-39 T 12-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Alide_0883 374a7ce82c1f53a2dda41a050f82904b 510 Pfam PF00534 Glycosyl transferases group 1 314 473 4.3E-22 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 Alide_0883 374a7ce82c1f53a2dda41a050f82904b 510 Pfam PF11997 Domain of unknown function (DUF3492) 9 290 1.9E-104 T 12-10-2018 IPR022622 Domain of unknown function DUF3492 Alide_0883 374a7ce82c1f53a2dda41a050f82904b 510 SUPERFAMILY SSF53756 13 500 1.5E-60 T 12-10-2018 Alide_0883 374a7ce82c1f53a2dda41a050f82904b 510 Gene3D G3DSA:3.40.50.2000 145 309 7.1E-11 T 12-10-2018 Alide_0883 374a7ce82c1f53a2dda41a050f82904b 510 Gene3D G3DSA:3.40.50.2000 310 487 3.2E-32 T 12-10-2018 Alide_1677 10cfd4086dd2d88c9d4094009c3ec230 535 Gene3D G3DSA:3.40.50.300 4 230 9.0E-45 T 12-10-2018 Alide_0101 ba780e86a348b19364de40a9ed7549f8 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 85 18.895 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Alide_0101 ba780e86a348b19364de40a9ed7549f8 89 Pfam PF03776 Septum formation topological specificity factor MinE 14 83 1.1E-24 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Alide_0101 ba780e86a348b19364de40a9ed7549f8 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 84 1.9E-28 T 12-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Alide_0101 ba780e86a348b19364de40a9ed7549f8 89 Gene3D G3DSA:3.30.1070.10 1 84 1.8E-28 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 Alide_0101 ba780e86a348b19364de40a9ed7549f8 89 SUPERFAMILY SSF55229 34 85 5.36E-15 T 12-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 Alide_2041 42beb7ce85d22dd6feaff2ea82bf3265 287 Gene3D G3DSA:3.40.190.150 33 277 1.7E-87 T 12-10-2018 Alide_2041 42beb7ce85d22dd6feaff2ea82bf3265 287 PIRSF PIRSF017082 32 287 5.7E-56 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2041 42beb7ce85d22dd6feaff2ea82bf3265 287 SUPERFAMILY SSF53850 78 247 1.05E-8 T 12-10-2018 Alide_2041 42beb7ce85d22dd6feaff2ea82bf3265 287 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 33 284 1.8E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2041 42beb7ce85d22dd6feaff2ea82bf3265 287 Gene3D G3DSA:3.40.190.10 90 212 1.7E-87 T 12-10-2018 Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 Gene3D G3DSA:3.30.70.270 466 659 1.0E-53 T 12-10-2018 Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 Gene3D G3DSA:2.10.70.100 419 465 1.7E-8 T 12-10-2018 Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 Pfam PF00990 Diguanylate cyclase, GGDEF domain 483 653 1.6E-43 T 12-10-2018 IPR000160 GGDEF domain Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 Gene3D G3DSA:3.30.450.20 346 412 2.6E-8 T 12-10-2018 Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 SUPERFAMILY SSF55073 486 658 1.33E-42 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 348 470 4.2E-9 T 12-10-2018 IPR000014 PAS domain Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 SUPERFAMILY SSF55785 355 465 3.14E-13 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 477 656 1.6E-45 T 12-10-2018 IPR000160 GGDEF domain Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 SMART SM00267 470 657 2.4E-59 T 12-10-2018 IPR000160 GGDEF domain Alide_3814 9e1e2e7675c22cb927f73e378e91a876 679 Pfam PF08447 PAS fold 376 457 4.8E-9 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 Pfam PF13549 ATP-grasp domain 467 686 2.2E-38 T 12-10-2018 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 SUPERFAMILY SSF51735 7 138 1.77E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 Pfam PF13380 CoA binding domain 10 135 4.1E-23 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 157 293 8.6E-41 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 Gene3D G3DSA:3.40.50.720 3 130 2.3E-36 T 12-10-2018 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 Gene3D G3DSA:3.30.470.20 473 683 5.3E-46 T 12-10-2018 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 SMART SM00881 6 101 6.8E-30 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 Gene3D G3DSA:3.30.1490.20 491 566 5.3E-46 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 SUPERFAMILY SSF56059 473 685 2.03E-24 T 12-10-2018 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 Gene3D G3DSA:3.40.50.261 297 454 4.3E-23 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 SUPERFAMILY SSF52210 300 450 3.4E-23 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 Gene3D G3DSA:3.40.50.261 139 296 3.1E-41 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4310 5a2e73ed8ae8fdeda36d4e58cf598cc0 692 SUPERFAMILY SSF52210 133 295 1.06E-34 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 SUPERFAMILY SSF82693 152 343 1.57E-9 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 SUPERFAMILY SSF82866 310 512 1.96E-36 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 SUPERFAMILY SSF82866 834 1065 4.97E-40 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 Gene3D G3DSA:3.30.2090.10 192 283 1.5E-227 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 Gene3D G3DSA:3.30.70.1430 585 695 1.5E-227 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 SUPERFAMILY SSF82714 195 277 5.62E-16 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 Gene3D G3DSA:1.20.1640.10 26 525 1.5E-227 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 SUPERFAMILY SSF82693 581 695 4.71E-12 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 Pfam PF00873 AcrB/AcrD/AcrF family 23 1061 2.0E-152 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 Gene3D G3DSA:1.20.1640.10 526 1060 1.5E-227 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 PRINTS PR00702 Acriflavin resistance protein family signature 48 66 6.7E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 PRINTS PR00702 Acriflavin resistance protein family signature 405 429 6.7E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 PRINTS PR00702 Acriflavin resistance protein family signature 20 44 6.7E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 PRINTS PR00702 Acriflavin resistance protein family signature 351 374 6.7E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 PRINTS PR00702 Acriflavin resistance protein family signature 460 483 6.7E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 PRINTS PR00702 Acriflavin resistance protein family signature 485 508 6.7E-27 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 Gene3D G3DSA:3.30.2090.10 744 833 1.5E-227 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 Gene3D G3DSA:3.30.70.1430 50 841 1.5E-227 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 SUPERFAMILY SSF82693 50 141 2.28E-17 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 SUPERFAMILY SSF82714 746 829 2.62E-11 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 Gene3D G3DSA:3.30.70.1440 696 910 1.5E-227 T 12-10-2018 Alide_2303 3a5016c3012401fd5f92108cea743db7 1077 Gene3D G3DSA:3.30.70.1320 146 345 1.5E-227 T 12-10-2018 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 Gene3D G3DSA:3.40.50.12440 44 1262 0.0 T 12-10-2018 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 Pfam PF01568 Molydopterin dinucleotide binding domain 1104 1219 1.3E-23 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 SUPERFAMILY SSF50692 1096 1251 1.54E-46 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Alide_0508 fc7970eed81747cbe710238b946afa12 1264 SUPERFAMILY SSF53706 3 1086 0.0 T 12-10-2018 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 Pfam PF00384 Molybdopterin oxidoreductase 108 848 3.1E-158 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 Gene3D G3DSA:4.10.1200.10 1 26 1.5E-6 T 12-10-2018 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 3 40 9.1E-18 T 12-10-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 SMART SM00926 43 105 4.0E-8 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 793 810 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 1142 1169 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Alide_0508 fc7970eed81747cbe710238b946afa12 1264 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1252 0.0 T 12-10-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Alide_3943 5c318666760540a88a2525c227cc21f1 231 Gene3D G3DSA:1.20.120.530 70 210 7.3E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_3943 5c318666760540a88a2525c227cc21f1 231 SUPERFAMILY SSF46785 4 92 8.85E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3943 5c318666760540a88a2525c227cc21f1 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 64 1.6E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3943 5c318666760540a88a2525c227cc21f1 231 SMART SM00895 75 202 7.4E-21 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3943 5c318666760540a88a2525c227cc21f1 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 6.7E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3943 5c318666760540a88a2525c227cc21f1 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 6.7E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3943 5c318666760540a88a2525c227cc21f1 231 Gene3D G3DSA:1.10.10.10 1 66 7.2E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3943 5c318666760540a88a2525c227cc21f1 231 SUPERFAMILY SSF48008 72 203 5.23E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_3943 5c318666760540a88a2525c227cc21f1 231 SMART SM00345 8 66 9.7E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3943 5c318666760540a88a2525c227cc21f1 231 Pfam PF07729 FCD domain 75 201 1.4E-23 T 12-10-2018 IPR011711 GntR, C-terminal Alide_1369 63d2bcccee4d56d873195a001ca15e3b 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 1.3E-30 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_1369 63d2bcccee4d56d873195a001ca15e3b 221 TIGRFAM TIGR03003 ectoine_ehuD: ectoine/hydroxyectoine ABC transporter, permease protein EhuD 7 214 1.5E-61 T 12-10-2018 IPR014341 Ectoine/hydroxyectoine ABC transporter, permease protein EhuD Alide_1369 63d2bcccee4d56d873195a001ca15e3b 221 Gene3D G3DSA:1.10.3720.10 5 217 6.1E-54 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1369 63d2bcccee4d56d873195a001ca15e3b 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 214 1.4E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1369 63d2bcccee4d56d873195a001ca15e3b 221 SUPERFAMILY SSF161098 13 200 2.75E-46 T 12-10-2018 IPR035906 MetI-like superfamily Alide_4369 543405a82a5b2d72141d46a44b962ccb 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 26 291 1.4E-42 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3107 6a412305550aadfd564d513af689eed6 591 SUPERFAMILY SSF55031 392 502 3.84E-25 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_3107 6a412305550aadfd564d513af689eed6 591 Gene3D G3DSA:3.30.70.360 391 504 2.7E-121 T 12-10-2018 Alide_3107 6a412305550aadfd564d513af689eed6 591 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 18 171 1.3E-51 T 12-10-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Alide_3107 6a412305550aadfd564d513af689eed6 591 Pfam PF01546 Peptidase family M20/M25/M40 255 584 7.7E-25 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_3107 6a412305550aadfd564d513af689eed6 591 Gene3D G3DSA:1.10.3330.10 3 175 4.9E-55 T 12-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Alide_3107 6a412305550aadfd564d513af689eed6 591 SUPERFAMILY SSF53187 183 587 1.8E-72 T 12-10-2018 Alide_3107 6a412305550aadfd564d513af689eed6 591 Pfam PF09349 OHCU decarboxylase 9 170 2.4E-43 T 12-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Alide_3107 6a412305550aadfd564d513af689eed6 591 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 204 585 2.0E-94 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 Alide_3107 6a412305550aadfd564d513af689eed6 591 Gene3D G3DSA:3.40.630.10 202 581 2.7E-121 T 12-10-2018 Alide_3107 6a412305550aadfd564d513af689eed6 591 SUPERFAMILY SSF158694 4 172 2.49E-49 T 12-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 SMART SM00388 214 281 0.0089 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 SUPERFAMILY SSF55874 310 427 2.1E-25 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 SMART SM00387 323 428 3.0E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 SUPERFAMILY SSF47384 203 275 1.02E-6 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 327 427 1.6E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 406 2.1E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 425 2.1E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 372 2.1E-8 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 Gene3D G3DSA:1.10.287.130 191 275 1.9E-7 T 12-10-2018 Alide_1990 1f38530da370e7bfed494b7b4dfcea1e 438 Gene3D G3DSA:3.30.565.10 276 427 5.5E-24 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2580 4261f57c14089b54bbf856d531f98d63 257 Gene3D G3DSA:3.40.50.150 51 257 8.4E-67 T 12-10-2018 Alide_2580 4261f57c14089b54bbf856d531f98d63 257 Pfam PF02390 Putative methyltransferase 85 252 2.1E-54 T 12-10-2018 Alide_2580 4261f57c14089b54bbf856d531f98d63 257 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 73 256 1.3E-54 T 12-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Alide_2580 4261f57c14089b54bbf856d531f98d63 257 SUPERFAMILY SSF53335 37 256 1.49E-45 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2580 4261f57c14089b54bbf856d531f98d63 257 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 45 257 29.829 T 12-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Alide_3098 7cc3e0e9ff4c1066be01fde5eeb38726 296 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 259 1.8E-46 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_3098 7cc3e0e9ff4c1066be01fde5eeb38726 296 SMART SM00062 36 262 2.2E-49 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_3098 7cc3e0e9ff4c1066be01fde5eeb38726 296 Gene3D G3DSA:3.40.190.10 26 265 3.3E-86 T 12-10-2018 Alide_3098 7cc3e0e9ff4c1066be01fde5eeb38726 296 Gene3D G3DSA:3.40.190.10 125 219 3.3E-86 T 12-10-2018 Alide_3098 7cc3e0e9ff4c1066be01fde5eeb38726 296 SUPERFAMILY SSF53850 10 263 2.41E-57 T 12-10-2018 Alide_0435 83ef39d812bc1cfe35f51ab5b1368607 156 SUPERFAMILY SSF81573 62 121 1.44E-8 T 12-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily Alide_0435 83ef39d812bc1cfe35f51ab5b1368607 156 Gene3D G3DSA:1.20.5.620 62 122 1.2E-5 T 12-10-2018 Alide_0435 83ef39d812bc1cfe35f51ab5b1368607 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 5.7E-38 T 12-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 Alide_0435 83ef39d812bc1cfe35f51ab5b1368607 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 9.2E-27 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Alide_0435 83ef39d812bc1cfe35f51ab5b1368607 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 2 138 12.258 T 12-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Alide_0961 eb0d2a08080ec9b1b401d3d6ed6f2769 148 Gene3D G3DSA:3.90.79.10 1 143 2.9E-29 T 12-10-2018 Alide_0961 eb0d2a08080ec9b1b401d3d6ed6f2769 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 2 19 2.1E-10 T 12-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 Alide_0961 eb0d2a08080ec9b1b401d3d6ed6f2769 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 19 40 2.1E-10 T 12-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 Alide_0961 eb0d2a08080ec9b1b401d3d6ed6f2769 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 128 141 2.1E-10 T 12-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 Alide_0961 eb0d2a08080ec9b1b401d3d6ed6f2769 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 71 90 2.1E-10 T 12-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 Alide_0961 eb0d2a08080ec9b1b401d3d6ed6f2769 148 SUPERFAMILY SSF55811 2 145 4.6E-22 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_0961 eb0d2a08080ec9b1b401d3d6ed6f2769 148 Pfam PF00293 NUDIX domain 6 144 1.3E-12 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Alide_3489 978db49f1b53654c638a9a1d87abbffc 302 Gene3D G3DSA:3.40.50.150 72 272 2.3E-10 T 12-10-2018 Alide_3489 978db49f1b53654c638a9a1d87abbffc 302 SUPERFAMILY SSF53335 90 229 2.21E-13 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2207 3a9d7aad804debb4835eafbb1c80e362 178 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 7.5E-64 T 12-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 Alide_2207 3a9d7aad804debb4835eafbb1c80e362 178 Pfam PF02082 Transcriptional regulator 1 82 6.0E-28 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type Alide_2207 3a9d7aad804debb4835eafbb1c80e362 178 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 2.4E-44 T 12-10-2018 IPR000944 Transcription regulator Rrf2-type Alide_2207 3a9d7aad804debb4835eafbb1c80e362 178 SUPERFAMILY SSF46785 2 133 5.0E-37 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2207 3a9d7aad804debb4835eafbb1c80e362 178 Gene3D G3DSA:1.10.10.10 1 144 1.3E-50 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 Gene3D G3DSA:3.40.50.261 144 310 2.9E-53 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 170 307 1.2E-51 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 Gene3D G3DSA:3.40.50.720 14 143 8.6E-40 T 12-10-2018 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 SMART SM00881 19 114 2.6E-31 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 SUPERFAMILY SSF52210 313 466 4.71E-31 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 Pfam PF13549 ATP-grasp domain 526 698 2.0E-37 T 12-10-2018 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 Gene3D G3DSA:3.30.470.20 493 697 5.2E-46 T 12-10-2018 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 Gene3D G3DSA:3.30.1490.20 512 584 5.2E-46 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 SUPERFAMILY SSF52210 145 309 1.44E-41 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 Gene3D G3DSA:3.40.50.261 311 472 3.2E-31 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 Pfam PF13380 CoA binding domain 23 149 6.7E-24 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 SUPERFAMILY SSF51735 13 153 1.58E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2416 1fe096a0ccddb6c4cc9da814d85c5f05 703 SUPERFAMILY SSF56059 493 698 1.24E-24 T 12-10-2018 Alide_3950 f49d090c5202373ce42b29e248d213ca 329 PIRSF PIRSF017082 1 329 7.7E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3950 f49d090c5202373ce42b29e248d213ca 329 Gene3D G3DSA:3.40.190.10 127 254 4.5E-99 T 12-10-2018 Alide_3950 f49d090c5202373ce42b29e248d213ca 329 SUPERFAMILY SSF53850 113 292 1.47E-8 T 12-10-2018 Alide_3950 f49d090c5202373ce42b29e248d213ca 329 Gene3D G3DSA:3.40.190.150 29 319 4.5E-99 T 12-10-2018 Alide_3950 f49d090c5202373ce42b29e248d213ca 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 325 3.0E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4267 4ba17464040e5b66a44848927591c3bd 310 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 42 108 3.3E-5 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Alide_4267 4ba17464040e5b66a44848927591c3bd 310 SUPERFAMILY SSF55347 121 291 6.87E-34 T 12-10-2018 Alide_4267 4ba17464040e5b66a44848927591c3bd 310 Gene3D G3DSA:3.40.50.720 40 310 2.5E-41 T 12-10-2018 Alide_4267 4ba17464040e5b66a44848927591c3bd 310 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 1 310 51.825 T 12-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Alide_4267 4ba17464040e5b66a44848927591c3bd 310 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 2 310 3.2E-120 T 12-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Alide_4267 4ba17464040e5b66a44848927591c3bd 310 SUPERFAMILY SSF51735 1 142 3.75E-30 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4267 4ba17464040e5b66a44848927591c3bd 310 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 116 132 - T 12-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Alide_4267 4ba17464040e5b66a44848927591c3bd 310 Gene3D G3DSA:3.30.360.10 120 295 2.5E-41 T 12-10-2018 Alide_4267 4ba17464040e5b66a44848927591c3bd 310 SMART SM00859 3 110 7.9E-18 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Alide_1403 5361b6d1ace079496a69c793ade5ec73 522 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 240 300 8.2E-14 T 12-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Alide_1403 5361b6d1ace079496a69c793ade5ec73 522 SUPERFAMILY SSF81891 208 442 2.88E-41 T 12-10-2018 Alide_1403 5361b6d1ace079496a69c793ade5ec73 522 Gene3D G3DSA:1.10.3090.10 208 455 5.7E-74 T 12-10-2018 Alide_1403 5361b6d1ace079496a69c793ade5ec73 522 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 29 507 33.432 T 12-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 Alide_1403 5361b6d1ace079496a69c793ade5ec73 522 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 32 476 5.2E-137 T 12-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 Alide_1403 5361b6d1ace079496a69c793ade5ec73 522 Gene3D G3DSA:3.30.460.10 29 206 5.3E-53 T 12-10-2018 Alide_1403 5361b6d1ace079496a69c793ade5ec73 522 Pfam PF12626 Polymerase A arginine-rich C-terminus 354 470 7.3E-33 T 12-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain Alide_1403 5361b6d1ace079496a69c793ade5ec73 522 Pfam PF01743 Poly A polymerase head domain 61 210 2.7E-32 T 12-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Alide_1403 5361b6d1ace079496a69c793ade5ec73 522 SUPERFAMILY SSF81301 35 207 2.4E-35 T 12-10-2018 Alide_2624 938a13aa0da091204b97f1215e3f0b55 445 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 16 439 1.4E-125 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Alide_2624 938a13aa0da091204b97f1215e3f0b55 445 Pfam PF13742 OB-fold nucleic acid binding domain 15 105 4.6E-27 T 12-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 Alide_2624 938a13aa0da091204b97f1215e3f0b55 445 Pfam PF02601 Exonuclease VII, large subunit 130 437 3.1E-88 T 12-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Alide_2624 938a13aa0da091204b97f1215e3f0b55 445 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 11 440 25.844 T 12-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Alide_4443 0a9fe9ab83d82df3246be3eea79e8364 78 ProDom PD019538 PLASMID KLEA KLEC KCRA1 STABLE INHERITANCE KCRB1 3 77 1.0E-36 T 12-10-2018 IPR035338 Protein KleA/KleC Alide_4443 0a9fe9ab83d82df3246be3eea79e8364 78 Pfam PF17383 Uncharacterized KorC regulated protein A 3 78 1.4E-32 T 12-10-2018 IPR035338 Protein KleA/KleC Alide_3236 0a635a6da998e8d3b9156db3ef04b510 397 SUPERFAMILY SSF53383 2 396 3.5E-104 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3236 0a635a6da998e8d3b9156db3ef04b510 397 Pfam PF00155 Aminotransferase class I and II 42 391 2.6E-39 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_3236 0a635a6da998e8d3b9156db3ef04b510 397 Gene3D G3DSA:3.90.1150.10 15 395 2.1E-130 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_3236 0a635a6da998e8d3b9156db3ef04b510 397 Gene3D G3DSA:3.40.640.10 62 286 2.1E-130 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 SUPERFAMILY SSF141868 849 1094 5.75E-88 T 12-10-2018 IPR035919 EAL domain superfamily Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 Pfam PF17159 Membrane-associated sensor domain 40 269 2.9E-66 T 12-10-2018 IPR033425 Membrane-associated sensor domain MASE3 Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 Pfam PF00563 EAL domain 849 1082 4.1E-74 T 12-10-2018 IPR001633 EAL domain Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 Pfam PF13426 PAS domain 559 658 1.7E-15 T 12-10-2018 IPR000014 PAS domain Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 Gene3D G3DSA:3.20.20.450 844 1094 3.7E-98 T 12-10-2018 IPR035919 EAL domain superfamily Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 Gene3D G3DSA:3.30.70.270 668 843 1.9E-50 T 12-10-2018 Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 SUPERFAMILY SSF55785 552 658 1.5E-28 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 SUPERFAMILY SSF55073 676 833 5.1E-42 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 SUPERFAMILY SSF55785 269 389 4.03E-12 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 Gene3D G3DSA:3.30.450.20 532 667 9.7E-36 T 12-10-2018 Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 Pfam PF00990 Diguanylate cyclase, GGDEF domain 672 826 6.5E-41 T 12-10-2018 IPR000160 GGDEF domain Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 SMART SM00091 278 344 1.4 T 12-10-2018 IPR000014 PAS domain Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 SMART SM00091 546 612 3.4E-4 T 12-10-2018 IPR000014 PAS domain Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 547 666 1.4E-22 T 12-10-2018 IPR000014 PAS domain Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 SMART SM00086 618 660 4.9E-8 T 12-10-2018 IPR001610 PAC motif Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 SMART SM00267 660 831 4.8E-49 T 12-10-2018 IPR000160 GGDEF domain Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 Gene3D G3DSA:3.30.450.20 264 401 1.7E-12 T 12-10-2018 Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 SMART SM00052 841 1087 7.6E-108 T 12-10-2018 IPR001633 EAL domain Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 668 829 2.9E-35 T 12-10-2018 IPR000160 GGDEF domain Alide_0126 4162f76f733543d41e7ec51f074bfc42 1100 Pfam PF08448 PAS fold 284 391 6.6E-10 T 12-10-2018 IPR013656 PAS fold-4 Alide_2257 a70c2123ebe300db02fe1838a323b13e 231 SUPERFAMILY SSF56529 20 230 6.93E-71 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_2257 a70c2123ebe300db02fe1838a323b13e 231 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 26 228 9.7E-54 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Alide_2257 a70c2123ebe300db02fe1838a323b13e 231 Gene3D G3DSA:3.90.850.10 1 231 1.1E-84 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_1163 6fd6607c9d9914372536c12cb231f587 887 Gene3D G3DSA:3.30.450.20 315 452 1.9E-7 T 12-10-2018 Alide_1163 6fd6607c9d9914372536c12cb231f587 887 Pfam PF12860 PAS fold 336 447 2.4E-20 T 12-10-2018 Alide_1163 6fd6607c9d9914372536c12cb231f587 887 SUPERFAMILY SSF55073 460 624 8.9E-46 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_1163 6fd6607c9d9914372536c12cb231f587 887 Gene3D G3DSA:3.30.450.20 32 182 3.7E-9 T 12-10-2018 Alide_1163 6fd6607c9d9914372536c12cb231f587 887 Gene3D G3DSA:3.20.20.450 636 885 2.1E-96 T 12-10-2018 IPR035919 EAL domain superfamily Alide_1163 6fd6607c9d9914372536c12cb231f587 887 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 451 618 3.4E-39 T 12-10-2018 IPR000160 GGDEF domain Alide_1163 6fd6607c9d9914372536c12cb231f587 887 Pfam PF00563 EAL domain 638 873 9.6E-70 T 12-10-2018 IPR001633 EAL domain Alide_1163 6fd6607c9d9914372536c12cb231f587 887 Gene3D G3DSA:3.30.70.270 453 635 2.1E-58 T 12-10-2018 Alide_1163 6fd6607c9d9914372536c12cb231f587 887 SUPERFAMILY SSF55785 316 442 1.97E-7 T 12-10-2018 IPR035965 PAS domain superfamily Alide_1163 6fd6607c9d9914372536c12cb231f587 887 Pfam PF00990 Diguanylate cyclase, GGDEF domain 455 616 1.2E-46 T 12-10-2018 IPR000160 GGDEF domain Alide_1163 6fd6607c9d9914372536c12cb231f587 887 SMART SM00052 632 878 5.6E-115 T 12-10-2018 IPR001633 EAL domain Alide_1163 6fd6607c9d9914372536c12cb231f587 887 SUPERFAMILY SSF141868 638 883 2.88E-86 T 12-10-2018 IPR035919 EAL domain superfamily Alide_1163 6fd6607c9d9914372536c12cb231f587 887 SMART SM00267 444 622 6.8E-58 T 12-10-2018 IPR000160 GGDEF domain Alide_3040 3b88df0f5d3c09d7c829c89331960cf3 374 SUPERFAMILY SSF102114 100 330 1.11E-11 T 12-10-2018 Alide_3040 3b88df0f5d3c09d7c829c89331960cf3 374 Gene3D G3DSA:1.10.150.530 2 63 1.9E-24 T 12-10-2018 Alide_3040 3b88df0f5d3c09d7c829c89331960cf3 374 PIRSF PIRSF006004 1 367 1.3E-145 T 12-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 Alide_3040 3b88df0f5d3c09d7c829c89331960cf3 374 Pfam PF04055 Radical SAM superfamily 106 279 1.1E-17 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_3040 3b88df0f5d3c09d7c829c89331960cf3 374 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 2 357 5.3E-130 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Alide_3040 3b88df0f5d3c09d7c829c89331960cf3 374 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 2 354 74.58 T 12-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Alide_3040 3b88df0f5d3c09d7c829c89331960cf3 374 Gene3D G3DSA:3.20.20.70 66 339 5.8E-108 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1737 bf73801c41286338c740463d2cd80901 325 SUPERFAMILY SSF53850 117 289 6.85E-14 T 12-10-2018 Alide_1737 bf73801c41286338c740463d2cd80901 325 PIRSF PIRSF017082 2 324 7.6E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1737 bf73801c41286338c740463d2cd80901 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 320 1.7E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1737 bf73801c41286338c740463d2cd80901 325 Gene3D G3DSA:3.40.190.150 34 315 2.7E-96 T 12-10-2018 Alide_1737 bf73801c41286338c740463d2cd80901 325 Gene3D G3DSA:3.40.190.10 127 250 2.7E-96 T 12-10-2018 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 Pfam PF00164 Ribosomal protein S12/S23 14 123 6.2E-43 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 Gene3D G3DSA:2.40.50.140 1 125 2.5E-63 T 12-10-2018 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 7.7E-70 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 SUPERFAMILY SSF50249 2 124 2.23E-52 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.758 T 12-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 PRINTS PR01034 Ribosomal protein S12 signature 58 77 5.4E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 PRINTS PR01034 Ribosomal protein S12 signature 77 94 5.4E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 PRINTS PR01034 Ribosomal protein S12 signature 110 122 5.4E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 PRINTS PR01034 Ribosomal protein S12 signature 27 42 5.4E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 PRINTS PR01034 Ribosomal protein S12 signature 42 57 5.4E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 PRINTS PR01034 Ribosomal protein S12 signature 94 110 5.4E-61 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0406 f26ec9fb9625e95f776aa1ec9caf2be7 125 PIRSF PIRSF002133 1 124 4.7E-54 T 12-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0381 75fea4d7f4e91ddaacf980304f501f3e 252 Pfam PF01925 Sulfite exporter TauE/SafE 8 244 8.7E-44 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 Gene3D G3DSA:3.40.1160.10 2 274 2.6E-88 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 Gene3D G3DSA:2.30.130.10 275 377 1.4E-30 T 12-10-2018 IPR036974 PUA domain superfamily GO:0003723 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 PIRSF PIRSF000729 5 377 2.0E-123 T 12-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 Pfam PF00696 Amino acid kinase family 11 242 5.6E-39 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 SUPERFAMILY SSF53633 10 265 2.75E-64 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 TIGRFAM TIGR01027 proB: glutamate 5-kinase 10 376 3.6E-124 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 PRINTS PR00474 Glutamate 5-kinase family signature 218 238 1.1E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 PRINTS PR00474 Glutamate 5-kinase family signature 51 65 1.1E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 PRINTS PR00474 Glutamate 5-kinase family signature 125 146 1.1E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 PRINTS PR00474 Glutamate 5-kinase family signature 85 113 1.1E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 PRINTS PR00474 Glutamate 5-kinase family signature 157 184 1.1E-45 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 Pfam PF01472 PUA domain 286 360 4.9E-18 T 12-10-2018 IPR002478 PUA domain GO:0003723 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 ProSitePatterns PS00902 Glutamate 5-kinase signature. 216 233 - T 12-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 Hamap MF_00456 Glutamate 5-kinase [proB]. 10 270 34.897 T 12-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 SUPERFAMILY SSF88697 286 376 9.94E-22 T 12-10-2018 IPR015947 PUA-like superfamily Alide_0929 a0a243dd39668da28bcecd1b5960c97d 379 SMART SM00359 286 365 9.0E-10 T 12-10-2018 IPR002478 PUA domain GO:0003723 Alide_3988 19e386cbb2292e1e61ddc1135bb610a2 301 Gene3D G3DSA:3.40.190.290 96 300 4.7E-37 T 12-10-2018 Alide_3988 19e386cbb2292e1e61ddc1135bb610a2 301 SUPERFAMILY SSF53850 95 300 3.8E-37 T 12-10-2018 Alide_3988 19e386cbb2292e1e61ddc1135bb610a2 301 Gene3D G3DSA:1.10.10.10 6 93 7.3E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3988 19e386cbb2292e1e61ddc1135bb610a2 301 Pfam PF03466 LysR substrate binding domain 93 299 1.1E-38 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3988 19e386cbb2292e1e61ddc1135bb610a2 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 2.2E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3988 19e386cbb2292e1e61ddc1135bb610a2 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3988 19e386cbb2292e1e61ddc1135bb610a2 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3988 19e386cbb2292e1e61ddc1135bb610a2 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3988 19e386cbb2292e1e61ddc1135bb610a2 301 SUPERFAMILY SSF46785 9 114 3.01E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4397 ce00b600b10048516a6d81d0477bd759 190 Pfam PF08282 haloacid dehalogenase-like hydrolase 102 167 3.0E-5 T 12-10-2018 Alide_4397 ce00b600b10048516a6d81d0477bd759 190 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 28 178 1.7E-42 T 12-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Alide_4397 ce00b600b10048516a6d81d0477bd759 190 Gene3D G3DSA:3.40.50.1000 12 190 6.6E-45 T 12-10-2018 IPR023214 HAD superfamily Alide_4397 ce00b600b10048516a6d81d0477bd759 190 SUPERFAMILY SSF56784 23 181 5.34E-36 T 12-10-2018 IPR036412 HAD-like superfamily Alide_4397 ce00b600b10048516a6d81d0477bd759 190 PIRSF PIRSF006118 15 189 7.4E-57 T 12-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Alide_2526 a81049ba7dc249f4c3c8cf0404ce0561 167 SUPERFAMILY SSF46785 23 158 7.71E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2526 a81049ba7dc249f4c3c8cf0404ce0561 167 Gene3D G3DSA:1.10.10.10 17 158 5.2E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2526 a81049ba7dc249f4c3c8cf0404ce0561 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 83 5.6E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_2526 a81049ba7dc249f4c3c8cf0404ce0561 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 99 5.6E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_2526 a81049ba7dc249f4c3c8cf0404ce0561 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 133 153 5.6E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_2526 a81049ba7dc249f4c3c8cf0404ce0561 167 PRINTS PR00598 Bacterial regulatory protein MarR family signature 103 119 5.6E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_2526 a81049ba7dc249f4c3c8cf0404ce0561 167 SMART SM00347 41 143 2.4E-17 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_2526 a81049ba7dc249f4c3c8cf0404ce0561 167 Pfam PF01047 MarR family 50 107 3.0E-7 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_2997 2590339abe57504d2263be0f30386411 417 Pfam PF03631 Virulence factor BrkB 36 283 3.9E-55 T 12-10-2018 IPR017039 Virulence factor BrkB Alide_2997 2590339abe57504d2263be0f30386411 417 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 29 283 1.5E-58 T 12-10-2018 IPR017039 Virulence factor BrkB Alide_2997 2590339abe57504d2263be0f30386411 417 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 11 314 21.466 T 12-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial Alide_1384 ecc2211d6dad12f97b3f3be3f643cab5 646 Pfam PF02421 Ferrous iron transport protein B 14 172 5.3E-51 T 12-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 Alide_1384 ecc2211d6dad12f97b3f3be3f643cab5 646 Pfam PF07670 Nucleoside recognition 311 402 1.1E-10 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Alide_1384 ecc2211d6dad12f97b3f3be3f643cab5 646 Pfam PF07670 Nucleoside recognition 483 615 5.0E-28 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Alide_1384 ecc2211d6dad12f97b3f3be3f643cab5 646 Pfam PF07664 Ferrous iron transport protein B C terminus 422 478 5.8E-14 T 12-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Alide_1384 ecc2211d6dad12f97b3f3be3f643cab5 646 Gene3D G3DSA:3.40.50.300 12 190 2.7E-39 T 12-10-2018 Alide_1384 ecc2211d6dad12f97b3f3be3f643cab5 646 SUPERFAMILY SSF52540 14 180 1.88E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1384 ecc2211d6dad12f97b3f3be3f643cab5 646 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 19 611 2.2E-138 T 12-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 Alide_1384 ecc2211d6dad12f97b3f3be3f643cab5 646 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 15 35 1.9E-6 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_1384 ecc2211d6dad12f97b3f3be3f643cab5 646 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 36 54 1.9E-6 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3876 350340ec75b123d66007e240dd49a2cc 107 Pfam PF04316 Anti-sigma-28 factor, FlgM 48 95 1.8E-10 T 12-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal Alide_3876 350340ec75b123d66007e240dd49a2cc 107 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 98 4.4E-19 T 12-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 Alide_3876 350340ec75b123d66007e240dd49a2cc 107 SUPERFAMILY SSF101498 23 96 2.22E-12 T 12-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily Alide_1141 f3f68ae9d3984b2308ad485294406f50 519 Pfam PF05683 Fumarase C-terminus 296 496 1.9E-80 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Alide_1141 f3f68ae9d3984b2308ad485294406f50 519 Gene3D G3DSA:3.20.130.10 314 496 3.0E-58 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 Alide_1141 f3f68ae9d3984b2308ad485294406f50 519 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 11 293 4.0E-64 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Alide_1141 f3f68ae9d3984b2308ad485294406f50 519 SUPERFAMILY SSF117457 326 495 1.44E-61 T 12-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 Alide_1141 f3f68ae9d3984b2308ad485294406f50 519 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 334 493 1.3E-46 T 12-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Alide_1141 f3f68ae9d3984b2308ad485294406f50 519 Pfam PF05681 Fumarate hydratase (Fumerase) 12 292 1.7E-100 T 12-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Alide_1141 f3f68ae9d3984b2308ad485294406f50 519 PIRSF PIRSF001394 1 513 7.3E-209 T 12-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 Alide_3156 9c232f48978693de34c6b929d02c0f72 342 SUPERFAMILY SSF53448 8 253 1.5E-39 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3156 9c232f48978693de34c6b929d02c0f72 342 Pfam PF00535 Glycosyl transferase family 2 11 133 2.0E-19 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Alide_3156 9c232f48978693de34c6b929d02c0f72 342 Gene3D G3DSA:3.90.550.10 3 223 3.4E-30 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_4048 7a29efe017b3886d7e922f3e1df78b7c 182 Pfam PF08808 RES domain 15 168 4.9E-22 T 12-10-2018 IPR014914 RES domain Alide_4048 7a29efe017b3886d7e922f3e1df78b7c 182 SMART SM00953 27 163 8.8E-16 T 12-10-2018 IPR014914 RES domain Alide_4609 e0c808124b777b681126ad0128a1cc5e 179 SUPERFAMILY SSF52540 1 166 2.19E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4609 e0c808124b777b681126ad0128a1cc5e 179 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 3 135 2.7E-45 T 12-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 Alide_4609 e0c808124b777b681126ad0128a1cc5e 179 Gene3D G3DSA:2.20.25.120 47 79 4.4E-48 T 12-10-2018 Alide_4609 e0c808124b777b681126ad0128a1cc5e 179 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 3 165 4.2E-39 T 12-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 Alide_4609 e0c808124b777b681126ad0128a1cc5e 179 Gene3D G3DSA:3.40.50.300 5 165 4.4E-48 T 12-10-2018 Alide_3313 23063499d51abf4179a34ed6922a2924 450 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 437 1.5E-29 T 12-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Alide_3313 23063499d51abf4179a34ed6922a2924 450 Gene3D G3DSA:3.40.50.880 265 442 2.0E-12 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3313 23063499d51abf4179a34ed6922a2924 450 SUPERFAMILY SSF52540 9 179 6.01E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3313 23063499d51abf4179a34ed6922a2924 450 SUPERFAMILY SSF52317 252 445 2.06E-30 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3313 23063499d51abf4179a34ed6922a2924 450 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 11 177 7.7E-15 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_3313 23063499d51abf4179a34ed6922a2924 450 Gene3D G3DSA:3.40.50.300 8 45 3.0E-5 T 12-10-2018 Alide_3313 23063499d51abf4179a34ed6922a2924 450 Gene3D G3DSA:3.40.50.300 47 187 2.0E-10 T 12-10-2018 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 SUPERFAMILY SSF88697 13 206 6.21E-51 T 12-10-2018 IPR015947 PUA-like superfamily Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 Gene3D G3DSA:3.40.50.300 318 494 4.7E-62 T 12-10-2018 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 14 206 1.9E-43 T 12-10-2018 IPR003111 Lon, substrate-binding domain Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 SMART SM00464 13 207 6.5E-73 T 12-10-2018 IPR003111 Lon, substrate-binding domain Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 Gene3D G3DSA:1.20.58.1480 127 250 1.3E-42 T 12-10-2018 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 Hamap MF_01973 Lon protease [lon]. 14 776 69.739 T 12-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 SMART SM00382 352 496 3.6E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 574 776 5.0E-94 T 12-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 360 379 3.9E-53 T 12-10-2018 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 599 615 3.9E-53 T 12-10-2018 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 730 748 3.9E-53 T 12-10-2018 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 707 726 3.9E-53 T 12-10-2018 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 677 696 3.9E-53 T 12-10-2018 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 Gene3D G3DSA:1.10.8.60 495 588 6.9E-31 T 12-10-2018 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 680 688 - T 12-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 SUPERFAMILY SSF52540 319 590 7.09E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 SUPERFAMILY SSF54211 599 774 4.93E-59 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 356 493 1.4E-18 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 PIRSF PIRSF001174 5 779 0.0 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 Gene3D G3DSA:3.30.230.10 589 776 3.9E-80 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 TIGRFAM TIGR00763 lon: endopeptidase La 15 775 1.2E-296 T 12-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Alide_2986 9424ab983fd8318587da80d74ac7cee6 806 Gene3D G3DSA:2.30.130.40 9 118 1.5E-33 T 12-10-2018 Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 Gene3D G3DSA:3.40.50.300 287 431 6.9E-50 T 12-10-2018 Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 SMART SM00490 477 563 3.3E-18 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 Gene3D G3DSA:4.10.860.10 633 688 4.0E-18 T 12-10-2018 Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 SUPERFAMILY SSF46600 638 684 2.48E-11 T 12-10-2018 IPR036876 UVR domain superfamily Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 Gene3D G3DSA:3.40.50.300 432 613 3.2E-50 T 12-10-2018 Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 Pfam PF00271 Helicase conserved C-terminal domain 455 561 1.4E-17 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 SUPERFAMILY SSF52540 22 432 1.35E-136 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 Gene3D G3DSA:3.40.50.300 13 255 1.2E-71 T 12-10-2018 Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 Pfam PF02151 UvrB/uvrC motif 649 682 1.3E-7 T 12-10-2018 IPR001943 UVR domain GO:0005515 Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 SUPERFAMILY SSF52540 55 599 4.05E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 Hamap MF_00204 UvrABC system protein B [uvrB]. 21 683 43.455 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 Pfam PF04851 Type III restriction enzyme, res subunit 34 150 4.2E-9 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 Pfam PF12344 Ultra-violet resistance protein B 569 611 1.2E-20 T 12-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 SMART SM00487 27 443 7.4E-30 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_2206 5fbdca375459f08c45b2eb6a3254face 695 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 23 681 0.0 T 12-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Alide_1977 8da9e9b0eb93600c70796efb22214bf3 183 Gene3D G3DSA:3.30.530.20 1 151 8.8E-43 T 12-10-2018 IPR023393 START-like domain superfamily Alide_1977 8da9e9b0eb93600c70796efb22214bf3 183 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 7 144 3.1E-37 T 12-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G Alide_1977 8da9e9b0eb93600c70796efb22214bf3 183 SUPERFAMILY SSF55961 1 145 1.36E-38 T 12-10-2018 Alide_0706 335a31616a204cfde32394b456d4dc2d 305 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 41 301 7.4E-66 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 Alide_0706 335a31616a204cfde32394b456d4dc2d 305 Gene3D G3DSA:3.40.50.150 8 305 3.1E-103 T 12-10-2018 Alide_0706 335a31616a204cfde32394b456d4dc2d 305 SUPERFAMILY SSF53335 17 301 1.37E-82 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0706 335a31616a204cfde32394b456d4dc2d 305 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 10 292 38.425 T 12-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 Alide_0807 a1b118c424380e48b64ca18995b01eb5 346 PRINTS PR00184 Neisseria sp. porin signature 92 111 5.6E-9 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Alide_0807 a1b118c424380e48b64ca18995b01eb5 346 PRINTS PR00184 Neisseria sp. porin signature 54 79 5.6E-9 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Alide_0807 a1b118c424380e48b64ca18995b01eb5 346 PRINTS PR00184 Neisseria sp. porin signature 285 309 5.6E-9 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Alide_0807 a1b118c424380e48b64ca18995b01eb5 346 Gene3D G3DSA:2.40.160.10 20 346 6.1E-95 T 12-10-2018 IPR023614 Porin domain superfamily Alide_0807 a1b118c424380e48b64ca18995b01eb5 346 Pfam PF13609 Gram-negative porin 7 313 2.5E-64 T 12-10-2018 Alide_0807 a1b118c424380e48b64ca18995b01eb5 346 SUPERFAMILY SSF56935 20 346 1.71E-77 T 12-10-2018 Alide_0051 8e6135deadbe298f51b966931e45e3f7 204 Pfam PF01810 LysE type translocator 17 203 6.8E-36 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Alide_0051 8e6135deadbe298f51b966931e45e3f7 204 PIRSF PIRSF006324 1 204 9.2E-49 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Alide_2321 1f59b293c6692f0f452f1036f50ced31 256 SUPERFAMILY SSF52096 4 256 8.79E-74 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2321 1f59b293c6692f0f452f1036f50ced31 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 255 3.5E-49 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_2321 1f59b293c6692f0f452f1036f50ced31 256 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_2321 1f59b293c6692f0f452f1036f50ced31 256 Gene3D G3DSA:3.90.226.10 2 200 1.7E-62 T 12-10-2018 Alide_2321 1f59b293c6692f0f452f1036f50ced31 256 Gene3D G3DSA:1.10.12.10 201 256 5.5E-13 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3050 cef20af8f2094198ceb2e72668c429b1 304 SUPERFAMILY SSF53850 90 279 9.17E-34 T 12-10-2018 Alide_3050 cef20af8f2094198ceb2e72668c429b1 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.1E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3050 cef20af8f2094198ceb2e72668c429b1 304 SUPERFAMILY SSF46785 5 112 4.59E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3050 cef20af8f2094198ceb2e72668c429b1 304 Gene3D G3DSA:3.40.190.10 93 274 2.0E-22 T 12-10-2018 Alide_3050 cef20af8f2094198ceb2e72668c429b1 304 Gene3D G3DSA:3.40.190.10 166 264 2.0E-22 T 12-10-2018 Alide_3050 cef20af8f2094198ceb2e72668c429b1 304 Pfam PF03466 LysR substrate binding domain 89 284 1.5E-35 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3050 cef20af8f2094198ceb2e72668c429b1 304 Gene3D G3DSA:1.10.10.10 5 91 3.9E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1401 33fad0577885118d14161964a1195ddd 235 Gene3D G3DSA:1.10.8.60 167 233 3.1E-22 T 12-10-2018 Alide_1401 33fad0577885118d14161964a1195ddd 235 SUPERFAMILY SSF52540 27 219 1.01E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1401 33fad0577885118d14161964a1195ddd 235 Gene3D G3DSA:3.40.50.300 47 164 1.3E-20 T 12-10-2018 Alide_1401 33fad0577885118d14161964a1195ddd 235 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 6 233 7.1E-61 T 12-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 Alide_1401 33fad0577885118d14161964a1195ddd 235 Pfam PF00308 Bacterial dnaA protein 128 213 1.7E-6 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Alide_1401 33fad0577885118d14161964a1195ddd 235 Pfam PF00308 Bacterial dnaA protein 22 84 4.8E-5 T 12-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Alide_2479 331770656953c2a4af5ef3075d91c552 110 Pfam PF00085 Thioredoxin 6 107 1.6E-34 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 Alide_2479 331770656953c2a4af5ef3075d91c552 110 PRINTS PR00421 Thioredoxin family signature 33 42 8.0E-10 T 12-10-2018 Alide_2479 331770656953c2a4af5ef3075d91c552 110 PRINTS PR00421 Thioredoxin family signature 73 84 8.0E-10 T 12-10-2018 Alide_2479 331770656953c2a4af5ef3075d91c552 110 PRINTS PR00421 Thioredoxin family signature 25 33 8.0E-10 T 12-10-2018 Alide_2479 331770656953c2a4af5ef3075d91c552 110 SUPERFAMILY SSF52833 6 109 3.82E-40 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2479 331770656953c2a4af5ef3075d91c552 110 PIRSF PIRSF000077 3 109 2.4E-44 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Alide_2479 331770656953c2a4af5ef3075d91c552 110 ProSitePatterns PS00194 Thioredoxin family active site. 26 44 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Alide_2479 331770656953c2a4af5ef3075d91c552 110 TIGRFAM TIGR01068 thioredoxin: thioredoxin 10 108 1.2E-39 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Alide_2479 331770656953c2a4af5ef3075d91c552 110 Gene3D G3DSA:3.40.30.10 1 109 8.6E-36 T 12-10-2018 Alide_4411 f42452880967c1bf0e381075db0f9c55 306 Gene3D G3DSA:1.10.3720.10 89 297 9.1E-27 T 12-10-2018 IPR035906 MetI-like superfamily Alide_4411 f42452880967c1bf0e381075db0f9c55 306 SUPERFAMILY SSF161098 92 288 1.64E-22 T 12-10-2018 IPR035906 MetI-like superfamily Alide_4411 f42452880967c1bf0e381075db0f9c55 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 9.3E-42 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_4016 9d21fa8fbd8c801751f2bd6755f7cda1 182 Pfam PF11072 Protein of unknown function (DUF2859) 34 180 1.2E-54 T 12-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 Alide_4016 9d21fa8fbd8c801751f2bd6755f7cda1 182 TIGRFAM TIGR03765 ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family 78 182 5.8E-42 T 12-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 Pfam PF07702 UTRA domain 100 238 1.7E-14 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 SUPERFAMILY SSF46785 8 79 6.9E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 Gene3D G3DSA:1.10.10.10 12 75 4.2E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 SMART SM00345 16 75 3.0E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 SUPERFAMILY SSF64288 63 244 6.6E-28 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 SMART SM00866 96 238 1.5E-14 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 1.3E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 1.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 1.1E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3522 3d774e4bf9b2701de174b591f6e09c76 259 Gene3D G3DSA:3.40.1410.10 88 248 9.3E-24 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_3510 467a2cf7cb921404aeca3f9c09e64673 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 326 1.1E-99 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3510 467a2cf7cb921404aeca3f9c09e64673 330 Gene3D G3DSA:3.40.190.10 132 255 1.1E-126 T 12-10-2018 Alide_3510 467a2cf7cb921404aeca3f9c09e64673 330 Gene3D G3DSA:3.40.190.150 34 320 1.1E-126 T 12-10-2018 Alide_3510 467a2cf7cb921404aeca3f9c09e64673 330 PIRSF PIRSF017082 1 330 1.3E-102 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3510 467a2cf7cb921404aeca3f9c09e64673 330 SUPERFAMILY SSF53850 120 291 9.15E-14 T 12-10-2018 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 SUPERFAMILY SSF55021 423 516 7.32E-27 T 12-10-2018 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 SUPERFAMILY SSF55021 336 426 3.2E-22 T 12-10-2018 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 9 516 3.5E-241 T 12-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 Gene3D G3DSA:3.40.50.1100 19 326 3.4E-137 T 12-10-2018 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 429 516 1.9E-24 T 12-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 328 422 1.1E-23 T 12-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 315 6.6E-76 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 Gene3D G3DSA:3.40.1020.10 337 518 2.5E-72 T 12-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 Gene3D G3DSA:3.40.50.1100 55 151 3.4E-137 T 12-10-2018 Alide_0804 f07f16c03bbb2a2e201ddbcda0bf2a2c 521 SUPERFAMILY SSF53686 7 360 4.19E-101 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 473 59.97 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 472 5.1E-237 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 SUPERFAMILY SSF53732 1 471 5.62E-162 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 Pfam PF00330 Aconitase family (aconitate hydratase) 7 464 5.2E-157 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 ProSitePatterns PS00450 Aconitase family signature 1. 343 359 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 PRINTS PR00415 Aconitase family signature 199 212 2.7E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 PRINTS PR00415 Aconitase family signature 347 358 2.7E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 PRINTS PR00415 Aconitase family signature 123 136 2.7E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 PRINTS PR00415 Aconitase family signature 137 152 2.7E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 PRINTS PR00415 Aconitase family signature 290 304 2.7E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 PRINTS PR00415 Aconitase family signature 406 419 2.7E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 PRINTS PR00415 Aconitase family signature 112 120 2.7E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 PRINTS PR00415 Aconitase family signature 213 226 2.7E-45 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 Gene3D G3DSA:3.30.499.10 331 473 1.1E-48 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 Gene3D G3DSA:3.30.499.20 4 290 2.7E-97 T 12-10-2018 Alide_3139 dff38caa84a14e58288d03e0b5c7135d 473 ProSitePatterns PS01244 Aconitase family signature 2. 406 419 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_2820 138914121baa47b00c16bc01d6746a23 962 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 897 962 8.5E-21 T 12-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 Alide_2820 138914121baa47b00c16bc01d6746a23 962 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 52 636 5.2E-206 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_2820 138914121baa47b00c16bc01d6746a23 962 Pfam PF08264 Anticodon-binding domain of tRNA 685 833 4.1E-39 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Alide_2820 138914121baa47b00c16bc01d6746a23 962 PRINTS PR00986 Valyl-tRNA synthetase signature 369 382 3.3E-36 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Alide_2820 138914121baa47b00c16bc01d6746a23 962 PRINTS PR00986 Valyl-tRNA synthetase signature 59 70 3.3E-36 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Alide_2820 138914121baa47b00c16bc01d6746a23 962 PRINTS PR00986 Valyl-tRNA synthetase signature 511 529 3.3E-36 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Alide_2820 138914121baa47b00c16bc01d6746a23 962 PRINTS PR00986 Valyl-tRNA synthetase signature 476 497 3.3E-36 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Alide_2820 138914121baa47b00c16bc01d6746a23 962 PRINTS PR00986 Valyl-tRNA synthetase signature 253 270 3.3E-36 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Alide_2820 138914121baa47b00c16bc01d6746a23 962 Gene3D G3DSA:1.10.287.380 891 962 3.0E-16 T 12-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Alide_2820 138914121baa47b00c16bc01d6746a23 962 Gene3D G3DSA:3.40.50.620 20 220 2.0E-58 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2820 138914121baa47b00c16bc01d6746a23 962 Gene3D G3DSA:3.90.740.10 221 358 1.9E-54 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Alide_2820 138914121baa47b00c16bc01d6746a23 962 Gene3D G3DSA:1.10.730.10 598 828 4.0E-68 T 12-10-2018 Alide_2820 138914121baa47b00c16bc01d6746a23 962 SUPERFAMILY SSF52374 20 646 1.62E-131 T 12-10-2018 Alide_2820 138914121baa47b00c16bc01d6746a23 962 Gene3D G3DSA:3.40.50.620 359 553 1.1E-41 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2820 138914121baa47b00c16bc01d6746a23 962 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 66 77 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_2820 138914121baa47b00c16bc01d6746a23 962 SUPERFAMILY SSF50677 214 365 2.22E-62 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Alide_2820 138914121baa47b00c16bc01d6746a23 962 Hamap MF_02004 Valine--tRNA ligase [valS]. 19 962 15.594 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Alide_2820 138914121baa47b00c16bc01d6746a23 962 SUPERFAMILY SSF46589 897 961 8.89E-17 T 12-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Alide_2820 138914121baa47b00c16bc01d6746a23 962 TIGRFAM TIGR00422 valS: valine--tRNA ligase 20 943 0.0 T 12-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Alide_2820 138914121baa47b00c16bc01d6746a23 962 SUPERFAMILY SSF47323 647 911 3.74E-65 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 Gene3D G3DSA:1.10.10.60 388 474 3.6E-20 T 12-10-2018 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 Pfam PF00072 Response regulator receiver domain 4 121 2.5E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 4 471 6.4E-209 T 12-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 SMART SM00382 164 311 5.1E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 Gene3D G3DSA:1.10.8.60 316 387 8.9E-21 T 12-10-2018 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 454 474 1.1E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 437 454 1.1E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 Pfam PF02954 Bacterial regulatory protein, Fis family 432 471 7.6E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 SUPERFAMILY SSF46689 384 474 2.08E-19 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 Gene3D G3DSA:3.40.50.2300 1 129 5.5E-32 T 12-10-2018 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 SUPERFAMILY SSF52540 144 387 6.48E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 Gene3D G3DSA:3.40.50.300 130 315 9.6E-62 T 12-10-2018 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 SUPERFAMILY SSF52172 2 189 1.05E-37 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 SMART SM00448 2 121 6.4E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_3015 3c38a8a8dc9cd872b3de201a1e92af4d 479 Pfam PF00158 Sigma-54 interaction domain 145 310 1.8E-67 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 Gene3D G3DSA:3.10.20.740 1 123 3.7E-41 T 12-10-2018 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 621 1.6E-203 T 12-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 Gene3D G3DSA:3.40.50.740 278 349 4.6E-19 T 12-10-2018 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 SMART SM00929 83 123 5.3E-20 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 Gene3D G3DSA:3.40.50.740 417 658 2.0E-25 T 12-10-2018 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 146 156 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 Pfam PF00384 Molybdopterin oxidoreductase 273 622 3.0E-37 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 SUPERFAMILY SSF54292 1 74 4.1E-20 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 Gene3D G3DSA:3.30.70.20 129 205 5.4E-7 T 12-10-2018 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 1 76 1.3E-18 T 12-10-2018 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 SUPERFAMILY SSF54862 75 211 4.02E-35 T 12-10-2018 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 SUPERFAMILY SSF53706 214 645 2.09E-96 T 12-10-2018 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 12-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 84 122 2.0E-16 T 12-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1052 fd412c941b20bc618be615ff7fe6056e 706 Gene3D G3DSA:3.40.228.10 350 407 4.6E-19 T 12-10-2018 Alide_0948 e0403a6a852cac51fe53dc434f3157ea 437 Gene3D G3DSA:3.40.190.10 27 382 8.4E-132 T 12-10-2018 Alide_0948 e0403a6a852cac51fe53dc434f3157ea 437 Pfam PF13416 Bacterial extracellular solute-binding protein 42 355 6.3E-41 T 12-10-2018 IPR006059 Bacterial extracellular solute-binding protein Alide_0948 e0403a6a852cac51fe53dc434f3157ea 437 Gene3D G3DSA:3.40.190.10 143 421 8.4E-132 T 12-10-2018 Alide_0948 e0403a6a852cac51fe53dc434f3157ea 437 SUPERFAMILY SSF53850 23 423 1.2E-72 T 12-10-2018 Alide_1447 3f6d1f4b6a6220009c0e51126c736a02 564 SUPERFAMILY SSF52540 76 362 1.24E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1447 3f6d1f4b6a6220009c0e51126c736a02 564 SMART SM00490 261 342 1.5E-31 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1447 3f6d1f4b6a6220009c0e51126c736a02 564 Gene3D G3DSA:3.40.50.300 218 429 4.8E-48 T 12-10-2018 Alide_1447 3f6d1f4b6a6220009c0e51126c736a02 564 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 156 164 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Alide_1447 3f6d1f4b6a6220009c0e51126c736a02 564 SMART SM00487 20 225 2.2E-61 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_1447 3f6d1f4b6a6220009c0e51126c736a02 564 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 560 49.444 T 12-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 Alide_1447 3f6d1f4b6a6220009c0e51126c736a02 564 Pfam PF00271 Helicase conserved C-terminal domain 234 342 1.9E-26 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1447 3f6d1f4b6a6220009c0e51126c736a02 564 Gene3D G3DSA:3.40.50.300 1 213 5.1E-77 T 12-10-2018 Alide_1447 3f6d1f4b6a6220009c0e51126c736a02 564 Pfam PF00270 DEAD/DEAH box helicase 25 198 6.9E-49 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_2239 94614d4533f325cd1dfa6db8c2f2d769 294 Gene3D G3DSA:3.40.50.720 1 165 5.6E-43 T 12-10-2018 Alide_2239 94614d4533f325cd1dfa6db8c2f2d769 294 SUPERFAMILY SSF51735 5 165 9.62E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2239 94614d4533f325cd1dfa6db8c2f2d769 294 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 280 1.1E-13 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Alide_2239 94614d4533f325cd1dfa6db8c2f2d769 294 PIRSF PIRSF000103 1 292 2.7E-69 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_2239 94614d4533f325cd1dfa6db8c2f2d769 294 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 165 1.4E-33 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Alide_2239 94614d4533f325cd1dfa6db8c2f2d769 294 SUPERFAMILY SSF48179 167 291 4.87E-23 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_2239 94614d4533f325cd1dfa6db8c2f2d769 294 Gene3D G3DSA:1.10.1040.10 166 293 3.9E-21 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_2239 94614d4533f325cd1dfa6db8c2f2d769 294 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 159 187 4.8E-11 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Alide_2239 94614d4533f325cd1dfa6db8c2f2d769 294 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 4.8E-11 T 12-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Alide_0946 bc6b3750ac94d1065e24fb59ac5538e4 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 277 2.1E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0946 bc6b3750ac94d1065e24fb59ac5538e4 282 SUPERFAMILY SSF161098 4 278 7.06E-59 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0946 bc6b3750ac94d1065e24fb59ac5538e4 282 Gene3D G3DSA:1.10.3720.10 2 275 2.8E-53 T 12-10-2018 IPR035906 MetI-like superfamily Alide_3025 50fe74aa1c34f780cc3c5750097be825 174 SUPERFAMILY SSF53271 5 168 5.11E-32 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_3025 50fe74aa1c34f780cc3c5750097be825 174 Gene3D G3DSA:3.40.50.2020 7 172 1.8E-31 T 12-10-2018 Alide_3025 50fe74aa1c34f780cc3c5750097be825 174 Pfam PF00156 Phosphoribosyl transferase domain 12 158 4.3E-24 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Alide_1003 6d121a0decbe0e14110b8972cadde6e2 138 Gene3D G3DSA:2.40.50.100 56 134 4.2E-8 T 12-10-2018 Alide_1003 6d121a0decbe0e14110b8972cadde6e2 138 SUPERFAMILY SSF51230 85 135 1.57E-7 T 12-10-2018 IPR011053 Single hybrid motif Alide_3961 0db091e8aad147a719a72a30871f87fc 121 SUPERFAMILY SSF46946 2 114 5.18E-45 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Alide_3961 0db091e8aad147a719a72a30871f87fc 121 Pfam PF00416 Ribosomal protein S13/S18 63 108 2.8E-17 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3961 0db091e8aad147a719a72a30871f87fc 121 PIRSF PIRSF002134 1 121 1.8E-42 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3961 0db091e8aad147a719a72a30871f87fc 121 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.862 T 12-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3961 0db091e8aad147a719a72a30871f87fc 121 Gene3D G3DSA:1.10.8.50 1 71 1.4E-27 T 12-10-2018 Alide_3961 0db091e8aad147a719a72a30871f87fc 121 Gene3D G3DSA:4.10.910.10 72 116 5.7E-25 T 12-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3961 0db091e8aad147a719a72a30871f87fc 121 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 7.5E-53 T 12-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_3961 0db091e8aad147a719a72a30871f87fc 121 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 12-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3133 319f6ea255d16613368f90d8d491739c 135 Pfam PF08859 DGC domain 16 118 3.5E-32 T 12-10-2018 IPR014958 DGC Alide_3133 319f6ea255d16613368f90d8d491739c 135 PIRSF PIRSF037181 1 134 8.3E-48 T 12-10-2018 IPR014958 DGC Alide_0314 62550d635bd1484ed5a40ff2bde4c57b 236 Gene3D G3DSA:3.40.50.2300 1 124 8.7E-35 T 12-10-2018 Alide_0314 62550d635bd1484ed5a40ff2bde4c57b 236 SUPERFAMILY SSF46894 132 232 7.37E-29 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_0314 62550d635bd1484ed5a40ff2bde4c57b 236 Gene3D G3DSA:1.10.10.10 125 236 3.3E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0314 62550d635bd1484ed5a40ff2bde4c57b 236 SMART SM00862 155 231 2.2E-25 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_0314 62550d635bd1484ed5a40ff2bde4c57b 236 Pfam PF00072 Response regulator receiver domain 6 119 4.6E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0314 62550d635bd1484ed5a40ff2bde4c57b 236 SMART SM00448 3 118 7.5E-42 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0314 62550d635bd1484ed5a40ff2bde4c57b 236 SUPERFAMILY SSF52172 3 130 2.42E-40 T 12-10-2018 IPR011006 CheY-like superfamily Alide_0314 62550d635bd1484ed5a40ff2bde4c57b 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 1.9E-23 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3493 28aebc16eff3b03cc4c7eae98a510bfc 107 Pfam PF13663 Domain of unknown function (DUF4148) 1 64 1.0E-12 T 12-10-2018 IPR025421 Protein of unknown function DUF4148 Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 SUPERFAMILY SSF51735 37 259 3.86E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 4.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 173 4.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 204 4.4E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 224 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 175 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 112 123 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 204 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 38 55 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 Gene3D G3DSA:3.40.50.720 36 265 1.4E-61 T 12-10-2018 Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 172 200 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_4187 426548d7f56067a3dcf9e79d1614715b 351 Pfam PF00106 short chain dehydrogenase 38 222 9.4E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2456 46d1a83c92953d4545fb2bfcd267a785 347 SUPERFAMILY SSF52540 1 239 5.2E-83 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2456 46d1a83c92953d4545fb2bfcd267a785 347 SUPERFAMILY SSF55021 262 344 1.06E-20 T 12-10-2018 Alide_2456 46d1a83c92953d4545fb2bfcd267a785 347 SMART SM00382 30 227 8.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2456 46d1a83c92953d4545fb2bfcd267a785 347 Gene3D G3DSA:3.30.70.260 256 346 6.4E-21 T 12-10-2018 Alide_2456 46d1a83c92953d4545fb2bfcd267a785 347 SMART SM00930 269 344 4.4E-29 T 12-10-2018 IPR018449 NIL domain Alide_2456 46d1a83c92953d4545fb2bfcd267a785 347 Pfam PF00005 ABC transporter 21 169 7.8E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2456 46d1a83c92953d4545fb2bfcd267a785 347 Pfam PF09383 NIL domain 271 342 1.5E-23 T 12-10-2018 IPR018449 NIL domain Alide_2456 46d1a83c92953d4545fb2bfcd267a785 347 Gene3D G3DSA:3.40.50.300 2 248 2.9E-77 T 12-10-2018 Alide_2456 46d1a83c92953d4545fb2bfcd267a785 347 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0914 cd12edc0a26a2c29f281c1770ee6986e 251 Gene3D G3DSA:2.60.440.10 3 250 1.1E-78 T 12-10-2018 IPR027462 Z ring-associated protein D, C-terminal Alide_0914 cd12edc0a26a2c29f281c1770ee6986e 251 Gene3D G3DSA:1.10.3900.10 10 177 1.1E-78 T 12-10-2018 Alide_0914 cd12edc0a26a2c29f281c1770ee6986e 251 Pfam PF07072 Cell division protein 16 226 6.6E-80 T 12-10-2018 IPR009777 Cell division protein ZapD Alide_0914 cd12edc0a26a2c29f281c1770ee6986e 251 SUPERFAMILY SSF160950 2 250 3.01E-86 T 12-10-2018 IPR036268 ZapD domain superfamily Alide_0914 cd12edc0a26a2c29f281c1770ee6986e 251 Hamap MF_01092 Cell division protein ZapD [zapD]. 1 250 31.86 T 12-10-2018 IPR009777 Cell division protein ZapD Alide_1925 66d96622eaeb14e2014fdb40b63effbd 433 PIRSF PIRSF001434 3 429 3.5E-134 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_1925 66d96622eaeb14e2014fdb40b63effbd 433 SUPERFAMILY SSF53383 8 426 8.97E-123 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_1925 66d96622eaeb14e2014fdb40b63effbd 433 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_1925 66d96622eaeb14e2014fdb40b63effbd 433 Gene3D G3DSA:3.40.640.10 8 290 6.0E-98 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_1925 66d96622eaeb14e2014fdb40b63effbd 433 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 9 426 4.9E-175 T 12-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 Alide_1925 66d96622eaeb14e2014fdb40b63effbd 433 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 426 5.5E-135 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_1925 66d96622eaeb14e2014fdb40b63effbd 433 Gene3D G3DSA:3.90.1150.10 294 433 2.9E-50 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_4367 97bca4d4fdfb4799a2d0a3c8314c8806 401 Pfam PF13458 Periplasmic binding protein 33 369 6.0E-69 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_4367 97bca4d4fdfb4799a2d0a3c8314c8806 401 Gene3D G3DSA:3.40.50.2300 55 362 3.3E-100 T 12-10-2018 Alide_4367 97bca4d4fdfb4799a2d0a3c8314c8806 401 SUPERFAMILY SSF53822 33 400 3.03E-75 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_4367 97bca4d4fdfb4799a2d0a3c8314c8806 401 Gene3D G3DSA:3.40.50.2300 149 370 3.3E-100 T 12-10-2018 Alide_0454 bc66ae63bb37b42c843f3895a9f50031 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.6E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0454 bc66ae63bb37b42c843f3895a9f50031 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.6E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0454 bc66ae63bb37b42c843f3895a9f50031 206 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 202 5.6E-19 T 12-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 Alide_0454 bc66ae63bb37b42c843f3895a9f50031 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 3.4E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0454 bc66ae63bb37b42c843f3895a9f50031 206 Gene3D G3DSA:1.10.357.10 2 205 2.1E-52 T 12-10-2018 Alide_0454 bc66ae63bb37b42c843f3895a9f50031 206 SUPERFAMILY SSF46689 1 67 1.23E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0454 bc66ae63bb37b42c843f3895a9f50031 206 SUPERFAMILY SSF48498 85 203 1.78E-11 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_0454 bc66ae63bb37b42c843f3895a9f50031 206 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Alide_0047 868b7e18afbac43dd16714ecd49ce76c 192 Gene3D G3DSA:3.40.50.360 1 192 3.8E-52 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_0047 868b7e18afbac43dd16714ecd49ce76c 192 Pfam PF03358 NADPH-dependent FMN reductase 1 156 1.4E-40 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Alide_0047 868b7e18afbac43dd16714ecd49ce76c 192 SUPERFAMILY SSF52218 1 187 6.39E-46 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 SUPERFAMILY SSF46894 136 209 4.42E-18 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 SMART SM00448 2 115 3.8E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 Gene3D G3DSA:3.40.50.12740 2 209 2.8E-61 T 12-10-2018 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 SMART SM00421 146 203 8.1E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 3.2E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 Pfam PF00072 Response regulator receiver domain 5 116 6.3E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 3.1E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 3.1E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 3.1E-9 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3442 81dcb3fb6215a00dee75543583e0071e 210 SUPERFAMILY SSF52172 1 132 1.2E-32 T 12-10-2018 IPR011006 CheY-like superfamily Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 Gene3D G3DSA:2.40.50.140 7 88 2.5E-32 T 12-10-2018 Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 ProSitePatterns PS00056 Ribosomal protein S17 signature. 60 72 - T 12-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 Pfam PF00366 Ribosomal protein S17 14 80 6.1E-29 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 9 78 9.0E-29 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 9 84 23.429 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 9 78 8.4E-34 T 12-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 SUPERFAMILY SSF50249 9 86 3.17E-29 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 PRINTS PR00973 Ribosomal protein S17 family signature 70 77 8.1E-12 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 PRINTS PR00973 Ribosomal protein S17 family signature 60 70 8.1E-12 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0420 8f062f9eb4cd9e71aee8b6d7717c106f 89 PRINTS PR00973 Ribosomal protein S17 family signature 28 51 8.1E-12 T 12-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1759 632c1bb37bcec281ac9ef100d13278f2 153 Pfam PF12279 Protein of unknown function (DUF3619) 15 147 3.3E-43 T 12-10-2018 IPR022064 Protein of unknown function DUF3619 Alide_0271 772c843ff5ae8049fef0e351fc838289 291 Gene3D G3DSA:3.40.50.720 4 164 1.4E-41 T 12-10-2018 Alide_0271 772c843ff5ae8049fef0e351fc838289 291 SUPERFAMILY SSF48179 165 290 5.33E-26 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_0271 772c843ff5ae8049fef0e351fc838289 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 164 6.5E-35 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Alide_0271 772c843ff5ae8049fef0e351fc838289 291 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 278 5.2E-20 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Alide_0271 772c843ff5ae8049fef0e351fc838289 291 SUPERFAMILY SSF51735 6 165 4.4E-31 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0271 772c843ff5ae8049fef0e351fc838289 291 PIRSF PIRSF000103 4 291 6.8E-61 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_0271 772c843ff5ae8049fef0e351fc838289 291 Gene3D G3DSA:1.10.1040.10 165 291 8.5E-28 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_3832 3629f593cac095a9462d450bada4b92f 221 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 44 51 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Alide_3832 3629f593cac095a9462d450bada4b92f 221 SUPERFAMILY SSF53056 5 211 4.84E-72 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Alide_3832 3629f593cac095a9462d450bada4b92f 221 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 84 104 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Alide_3832 3629f593cac095a9462d450bada4b92f 221 SMART SM00947 32 194 1.4E-66 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Alide_3832 3629f593cac095a9462d450bada4b92f 221 Pfam PF00484 Carbonic anhydrase 39 189 6.1E-49 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Alide_3832 3629f593cac095a9462d450bada4b92f 221 Gene3D G3DSA:3.40.1050.10 2 220 2.9E-80 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Alide_4322 5d63318652ef0f21a4d13b44c7550574 516 Gene3D G3DSA:3.40.50.12780 8 410 2.1E-86 T 12-10-2018 Alide_4322 5d63318652ef0f21a4d13b44c7550574 516 SUPERFAMILY SSF56801 30 513 2.35E-124 T 12-10-2018 Alide_4322 5d63318652ef0f21a4d13b44c7550574 516 Pfam PF00501 AMP-binding enzyme 44 383 4.2E-60 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_4322 5d63318652ef0f21a4d13b44c7550574 516 Pfam PF13193 AMP-binding enzyme C-terminal domain 425 501 9.7E-22 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_4322 5d63318652ef0f21a4d13b44c7550574 516 Gene3D G3DSA:3.30.300.310 412 515 1.2E-27 T 12-10-2018 Alide_2183 0d52535ec85740dc778acdcd9a62709d 170 SUPERFAMILY SSF47188 1 125 1.57E-29 T 12-10-2018 IPR035938 Hemerythrin-like superfamily Alide_2183 0d52535ec85740dc778acdcd9a62709d 170 Pfam PF01814 Hemerythrin HHE cation binding domain 14 125 3.0E-12 T 12-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Alide_2183 0d52535ec85740dc778acdcd9a62709d 170 Gene3D G3DSA:1.20.120.50 2 128 2.2E-33 T 12-10-2018 IPR035938 Hemerythrin-like superfamily Alide_2183 0d52535ec85740dc778acdcd9a62709d 170 ProSitePatterns PS00550 Hemerythrin family signature. 57 80 - T 12-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 Alide_2183 0d52535ec85740dc778acdcd9a62709d 170 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 6 125 8.9E-33 T 12-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 92 7.4E-19 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 SUPERFAMILY SSF47323 443 567 4.51E-36 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 Hamap MF_00123 Arginine--tRNA ligase [argS]. 2 567 23.902 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 Gene3D G3DSA:3.40.50.620 120 442 3.1E-151 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 Gene3D G3DSA:1.10.730.10 443 567 3.1E-151 T 12-10-2018 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 1.9E-22 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 1.9E-22 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 1.9E-22 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 PRINTS PR01038 Arginyl-tRNA synthetase signature 315 336 1.9E-22 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 Pfam PF00750 tRNA synthetases class I (R) 101 416 2.1E-25 T 12-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 SUPERFAMILY SSF52374 115 459 1.69E-84 T 12-10-2018 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 130 139 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 SMART SM00836 448 567 1.2E-50 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 6 567 1.1E-118 T 12-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 SMART SM01016 6 92 2.1E-26 T 12-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 Gene3D G3DSA:3.30.1360.70 1 112 1.4E-20 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 Pfam PF05746 DALR anticodon binding domain 448 567 3.6E-33 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Alide_4086 bc9d0f295c9be633b45aa1480f06f23c 567 SUPERFAMILY SSF55190 2 112 6.54E-18 T 12-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 5.3E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 5.3E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 5.3E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 5.3E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 5.3E-24 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 1.7E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 1.7E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 1.7E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 207 1.6E-6 T 12-10-2018 Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 SUPERFAMILY SSF51735 7 260 2.6E-63 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 Gene3D G3DSA:3.40.50.720 8 297 1.9E-70 T 12-10-2018 Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 252 3.1E-42 T 12-10-2018 Alide_0153 abc7395f4289cd274a98e4d957c94dc8 307 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 155 183 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_1902 da4becc5c6105b49f891a3dee627e1bb 387 Pfam PF04303 PrpF protein 6 384 1.4E-170 T 12-10-2018 IPR007400 PrpF protein Alide_1902 da4becc5c6105b49f891a3dee627e1bb 387 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 5 385 3.2E-214 T 12-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 Alide_1902 da4becc5c6105b49f891a3dee627e1bb 387 Gene3D G3DSA:3.10.310.10 11 381 6.1E-148 T 12-10-2018 Alide_1902 da4becc5c6105b49f891a3dee627e1bb 387 SUPERFAMILY SSF54506 181 384 4.39E-76 T 12-10-2018 Alide_1902 da4becc5c6105b49f891a3dee627e1bb 387 Gene3D G3DSA:3.10.310.10 177 367 6.1E-148 T 12-10-2018 Alide_1902 da4becc5c6105b49f891a3dee627e1bb 387 SUPERFAMILY SSF54506 3 177 2.83E-68 T 12-10-2018 Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 SUPERFAMILY SSF51230 2 97 1.26E-27 T 12-10-2018 IPR011053 Single hybrid motif Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 Pfam PF02817 e3 binding domain 116 149 2.3E-10 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 187 415 7.0E-78 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 Gene3D G3DSA:2.40.50.100 2 104 8.9E-25 T 12-10-2018 Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 Gene3D G3DSA:4.10.320.10 116 154 9.0E-11 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 SUPERFAMILY SSF52777 188 417 9.34E-86 T 12-10-2018 Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 Pfam PF00364 Biotin-requiring enzyme 5 77 3.8E-21 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 Gene3D G3DSA:3.30.559.10 186 418 1.4E-91 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 SUPERFAMILY SSF47005 108 153 3.53E-9 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Alide_2669 09cdf4325cb4a50195b1ed828c0c3755 418 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 417 6.5E-165 T 12-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Alide_4621 778916e58719ce5944047c0854cc87e5 512 Pfam PF00665 Integrase core domain 137 267 5.1E-19 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_4621 778916e58719ce5944047c0854cc87e5 512 SUPERFAMILY SSF53098 138 302 1.71E-7 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_2217 3b8d54835137a7008e91b0dff20eea77 134 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 21 131 1.5E-14 T 12-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III Alide_1016 ece3c19b737ea50aaaf280fe7689ef89 297 Pfam PF03755 YicC-like family, N-terminal region 1 155 1.1E-30 T 12-10-2018 IPR013527 YicC-like, N-terminal Alide_1016 ece3c19b737ea50aaaf280fe7689ef89 297 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 25 297 5.0E-62 T 12-10-2018 IPR005229 Conserved hypothetical protein CHP00255 Alide_1016 ece3c19b737ea50aaaf280fe7689ef89 297 Pfam PF08340 Domain of unknown function (DUF1732) 214 297 1.7E-34 T 12-10-2018 IPR013551 Domain of unknown function DUF1732 Alide_3636 d229c01fc54f12722de662d90409be0d 434 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 7 434 98.79 T 12-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Alide_3636 d229c01fc54f12722de662d90409be0d 434 Gene3D G3DSA:3.40.640.10 73 326 1.4E-165 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3636 d229c01fc54f12722de662d90409be0d 434 SUPERFAMILY SSF53383 5 433 1.11E-122 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3636 d229c01fc54f12722de662d90409be0d 434 Pfam PF00202 Aminotransferase class-III 36 402 2.5E-75 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_3636 d229c01fc54f12722de662d90409be0d 434 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 8 432 6.4E-172 T 12-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Alide_3636 d229c01fc54f12722de662d90409be0d 434 Gene3D G3DSA:3.90.1150.10 12 425 1.4E-165 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_0800 17020b60f63c92e63626743803ee6f8c 135 SUPERFAMILY SSF54523 31 134 5.76E-38 T 12-10-2018 Alide_0800 17020b60f63c92e63626743803ee6f8c 135 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 24 1.7E-6 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0800 17020b60f63c92e63626743803ee6f8c 135 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 3 23 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0800 17020b60f63c92e63626743803ee6f8c 135 Gene3D G3DSA:3.30.700.10 29 134 2.5E-40 T 12-10-2018 Alide_0800 17020b60f63c92e63626743803ee6f8c 135 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 4 135 3.2E-56 T 12-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Alide_0800 17020b60f63c92e63626743803ee6f8c 135 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 24 7.4E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0800 17020b60f63c92e63626743803ee6f8c 135 Pfam PF08334 Type II secretion system (T2SS), protein G 27 134 2.7E-43 T 12-10-2018 IPR013545 Type II secretion system protein G Alide_0800 17020b60f63c92e63626743803ee6f8c 135 PRINTS PR00813 Bacterial general secretion pathway protein G signature 40 58 7.2E-18 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Alide_0800 17020b60f63c92e63626743803ee6f8c 135 PRINTS PR00813 Bacterial general secretion pathway protein G signature 4 29 7.2E-18 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Alide_0718 9367c416cc64f193a5dda235de211cca 111 Pfam PF13591 MerR HTH family regulatory protein 22 104 3.6E-10 T 12-10-2018 Alide_0718 9367c416cc64f193a5dda235de211cca 111 Gene3D G3DSA:1.10.1660.10 17 110 1.9E-20 T 12-10-2018 Alide_0411 394fe96f2f61f4e4e9947b3dfb3e924a 224 Pfam PF00297 Ribosomal protein L3 62 190 1.1E-15 T 12-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0411 394fe96f2f61f4e4e9947b3dfb3e924a 224 Gene3D G3DSA:2.40.50.620 36 96 1.2E-15 T 12-10-2018 Alide_0411 394fe96f2f61f4e4e9947b3dfb3e924a 224 Gene3D G3DSA:2.40.30.10 139 218 5.2E-16 T 12-10-2018 Alide_0411 394fe96f2f61f4e4e9947b3dfb3e924a 224 ProSitePatterns PS00474 Ribosomal protein L3 signature. 109 132 - T 12-10-2018 IPR019926 Ribosomal protein L3, conserved site Alide_0411 394fe96f2f61f4e4e9947b3dfb3e924a 224 SUPERFAMILY SSF50447 6 219 3.53E-74 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_0411 394fe96f2f61f4e4e9947b3dfb3e924a 224 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 6 215 37.778 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0411 394fe96f2f61f4e4e9947b3dfb3e924a 224 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 8 212 7.2E-83 T 12-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0057 64b0c9b563d3f38819f8bcebc3acec07 301 SUPERFAMILY SSF51182 38 233 1.67E-19 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_0057 64b0c9b563d3f38819f8bcebc3acec07 301 Pfam PF12833 Helix-turn-helix domain 223 299 9.3E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_0057 64b0c9b563d3f38819f8bcebc3acec07 301 Gene3D G3DSA:2.60.120.10 42 124 3.1E-10 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_0057 64b0c9b563d3f38819f8bcebc3acec07 301 SUPERFAMILY SSF46689 260 298 9.86E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0057 64b0c9b563d3f38819f8bcebc3acec07 301 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 252 295 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Alide_0057 64b0c9b563d3f38819f8bcebc3acec07 301 SMART SM00342 217 299 1.1E-15 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_0057 64b0c9b563d3f38819f8bcebc3acec07 301 Gene3D G3DSA:1.10.10.60 201 301 5.0E-18 T 12-10-2018 Alide_0057 64b0c9b563d3f38819f8bcebc3acec07 301 Pfam PF02311 AraC-like ligand binding domain 59 159 8.7E-10 T 12-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Alide_1419 bb88176419594494240965c53e8e9aa1 322 PIRSF PIRSF017082 1 322 2.1E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1419 bb88176419594494240965c53e8e9aa1 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 318 2.4E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1419 bb88176419594494240965c53e8e9aa1 322 SUPERFAMILY SSF53850 113 284 1.58E-12 T 12-10-2018 Alide_1419 bb88176419594494240965c53e8e9aa1 322 Gene3D G3DSA:3.40.190.150 26 312 2.0E-106 T 12-10-2018 Alide_1419 bb88176419594494240965c53e8e9aa1 322 Gene3D G3DSA:3.40.190.10 124 247 2.0E-106 T 12-10-2018 Alide_4376 00de13c6f9bf45e2032fdc7be113aac9 141 Pfam PF01337 Barstar (barnase inhibitor) 46 130 1.1E-25 T 12-10-2018 IPR000468 Barstar (barnase inhibitor) Alide_4376 00de13c6f9bf45e2032fdc7be113aac9 141 SUPERFAMILY SSF52038 42 134 8.37E-23 T 12-10-2018 IPR035905 Barstar-like superfamily Alide_4376 00de13c6f9bf45e2032fdc7be113aac9 141 Gene3D G3DSA:3.30.370.10 44 133 1.3E-11 T 12-10-2018 IPR035905 Barstar-like superfamily Alide_3717 9a5d98664d2282752b3fc8deccafc754 181 Gene3D G3DSA:3.60.20.10 2 181 4.2E-62 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_3717 9a5d98664d2282752b3fc8deccafc754 181 PIRSF PIRSF039093 1 181 2.1E-83 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Alide_3717 9a5d98664d2282752b3fc8deccafc754 181 SUPERFAMILY SSF56235 3 181 1.32E-54 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_3717 9a5d98664d2282752b3fc8deccafc754 181 Pfam PF00227 Proteasome subunit 5 179 1.9E-18 T 12-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 Alide_3717 9a5d98664d2282752b3fc8deccafc754 181 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 6 181 40.479 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Alide_3717 9a5d98664d2282752b3fc8deccafc754 181 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 181 1.8E-81 T 12-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Alide_0945 6fe4cdc4756f3320ba55f11c2bc1addb 335 SUPERFAMILY SSF52540 4 246 2.58E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0945 6fe4cdc4756f3320ba55f11c2bc1addb 335 SUPERFAMILY SSF50331 240 334 5.95E-19 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_0945 6fe4cdc4756f3320ba55f11c2bc1addb 335 Gene3D G3DSA:3.40.50.300 3 225 8.3E-67 T 12-10-2018 Alide_0945 6fe4cdc4756f3320ba55f11c2bc1addb 335 Pfam PF00005 ABC transporter 24 165 2.5E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0945 6fe4cdc4756f3320ba55f11c2bc1addb 335 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0945 6fe4cdc4756f3320ba55f11c2bc1addb 335 SMART SM00382 32 215 5.3E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0945 6fe4cdc4756f3320ba55f11c2bc1addb 335 Pfam PF08402 TOBE domain 258 327 1.5E-6 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Alide_0945 6fe4cdc4756f3320ba55f11c2bc1addb 335 Gene3D G3DSA:2.40.50.940 226 256 4.2E-10 T 12-10-2018 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 SUPERFAMILY SSF52343 212 340 9.43E-31 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 Gene3D G3DSA:3.10.20.30 1 98 1.1E-24 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 Gene3D G3DSA:3.40.50.80 208 344 1.5E-26 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 PRINTS PR00410 Phenol hydroxylase reductase family signature 133 145 1.2E-23 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 PRINTS PR00410 Phenol hydroxylase reductase family signature 150 157 1.2E-23 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 PRINTS PR00410 Phenol hydroxylase reductase family signature 307 315 1.2E-23 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 PRINTS PR00410 Phenol hydroxylase reductase family signature 239 248 1.2E-23 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 PRINTS PR00410 Phenol hydroxylase reductase family signature 214 233 1.2E-23 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 SUPERFAMILY SSF63380 107 200 3.1E-26 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 Pfam PF00175 Oxidoreductase NAD-binding domain 215 319 8.4E-15 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 Gene3D G3DSA:2.40.30.10 100 197 3.4E-27 T 12-10-2018 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 Pfam PF00970 Oxidoreductase FAD-binding domain 110 199 4.4E-13 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 80 3.1E-15 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Alide_0328 158298a0b9c7c82834a122f0ab29e23d 356 SUPERFAMILY SSF54292 1 88 4.59E-26 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_2361 9f03d3c55d60e52ad3cf18407a0ca0f9 249 SMART SM00893 23 211 1.2E-68 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_2361 9f03d3c55d60e52ad3cf18407a0ca0f9 249 Gene3D G3DSA:3.40.50.620 1 247 5.9E-88 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2361 9f03d3c55d60e52ad3cf18407a0ca0f9 249 PIRSF PIRSF000090 1 249 8.0E-87 T 12-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Alide_2361 9f03d3c55d60e52ad3cf18407a0ca0f9 249 SUPERFAMILY SSF52402 1 242 8.37E-87 T 12-10-2018 Alide_2361 9f03d3c55d60e52ad3cf18407a0ca0f9 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 12-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Alide_2361 9f03d3c55d60e52ad3cf18407a0ca0f9 249 Pfam PF01012 Electron transfer flavoprotein domain 28 206 7.0E-47 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_0180 5d6b42528e1c8df8b3fbd13ce62a9e72 393 Gene3D G3DSA:3.30.70.360 187 301 7.4E-136 T 12-10-2018 Alide_0180 5d6b42528e1c8df8b3fbd13ce62a9e72 393 SUPERFAMILY SSF55031 189 302 1.26E-29 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_0180 5d6b42528e1c8df8b3fbd13ce62a9e72 393 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 21 380 4.4E-110 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_0180 5d6b42528e1c8df8b3fbd13ce62a9e72 393 PIRSF PIRSF005962 6 392 6.2E-123 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_0180 5d6b42528e1c8df8b3fbd13ce62a9e72 393 SUPERFAMILY SSF53187 10 391 7.48E-89 T 12-10-2018 Alide_0180 5d6b42528e1c8df8b3fbd13ce62a9e72 393 Pfam PF07687 Peptidase dimerisation domain 192 289 4.5E-11 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_0180 5d6b42528e1c8df8b3fbd13ce62a9e72 393 Gene3D G3DSA:3.40.630.10 21 377 7.4E-136 T 12-10-2018 Alide_0180 5d6b42528e1c8df8b3fbd13ce62a9e72 393 Pfam PF01546 Peptidase family M20/M25/M40 79 389 9.3E-34 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 Gene3D G3DSA:1.10.287.610 102 148 9.7E-85 T 12-10-2018 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 5 16 - T 12-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 PRINTS PR00395 Ribosomal protein S2 signature 5 23 3.8E-34 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 PRINTS PR00395 Ribosomal protein S2 signature 36 45 3.8E-34 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 PRINTS PR00395 Ribosomal protein S2 signature 173 184 3.8E-34 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 PRINTS PR00395 Ribosomal protein S2 signature 194 208 3.8E-34 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 PRINTS PR00395 Ribosomal protein S2 signature 156 173 3.8E-34 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 PRINTS PR00395 Ribosomal protein S2 signature 86 103 3.8E-34 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 224 9.4E-96 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 1 223 39.43 T 12-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 SUPERFAMILY SSF52313 5 228 4.97E-88 T 12-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily Alide_1464 09495c4614e142fb5f9315b5401e042e 250 Pfam PF00318 Ribosomal protein S2 8 222 1.1E-89 T 12-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1464 09495c4614e142fb5f9315b5401e042e 250 Gene3D G3DSA:3.40.50.10490 7 217 9.7E-85 T 12-10-2018 Alide_2892 adad7fb48947e7602c2c20299551bea4 640 Pfam PF13624 SurA N-terminal domain 1 165 1.2E-38 T 12-10-2018 Alide_2892 adad7fb48947e7602c2c20299551bea4 640 SUPERFAMILY SSF54534 266 372 9.81E-32 T 12-10-2018 Alide_2892 adad7fb48947e7602c2c20299551bea4 640 Pfam PF13616 PPIC-type PPIASE domain 265 371 1.1E-30 T 12-10-2018 Alide_2892 adad7fb48947e7602c2c20299551bea4 640 Gene3D G3DSA:3.10.50.40 268 372 3.2E-38 T 12-10-2018 Alide_2892 adad7fb48947e7602c2c20299551bea4 640 SUPERFAMILY SSF109998 38 240 2.16E-25 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily Alide_2892 adad7fb48947e7602c2c20299551bea4 640 Gene3D G3DSA:1.10.4030.30 242 382 3.2E-38 T 12-10-2018 Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 Gene3D G3DSA:3.40.50.12160 12 133 3.3E-26 T 12-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 SMART SM00729 151 380 6.6E-48 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 Pfam PF00919 Uncharacterized protein family UPF0004 12 90 1.9E-19 T 12-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 12 460 3.5E-162 T 12-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 SUPERFAMILY SSF102114 147 384 2.35E-46 T 12-10-2018 Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 11 462 58.754 T 12-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 12 460 2.4E-96 T 12-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 Pfam PF04055 Radical SAM superfamily 157 338 2.2E-27 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 Gene3D G3DSA:3.80.30.20 149 394 9.2E-64 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 Gene3D G3DSA:2.40.50.140 395 463 6.7E-16 T 12-10-2018 Alide_1321 c498f8f1cdd55b760e51ebaf448d558b 463 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 155 175 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Alide_4549 b73e6a43701076495bfb55bf4ff2da20 503 Pfam PF00665 Integrase core domain 127 247 4.9E-15 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_1719 b73e6a43701076495bfb55bf4ff2da20 503 Pfam PF00665 Integrase core domain 127 247 4.9E-15 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_3196 91c03d94a4ec08c233222652e86ad779 1022 Gene3D G3DSA:2.40.50.140 31 124 4.7E-32 T 12-10-2018 Alide_3196 91c03d94a4ec08c233222652e86ad779 1022 Gene3D G3DSA:3.40.1260.20 399 510 1.8E-34 T 12-10-2018 Alide_3196 91c03d94a4ec08c233222652e86ad779 1022 Pfam PF00575 S1 RNA binding domain 36 117 4.9E-13 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_3196 91c03d94a4ec08c233222652e86ad779 1022 SMART SM00316 37 118 8.8E-12 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_3196 91c03d94a4ec08c233222652e86ad779 1022 Hamap MF_00970 Ribonuclease E [rne]. 1 993 32.847 T 12-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 Alide_3196 91c03d94a4ec08c233222652e86ad779 1022 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 422 1.2E-157 T 12-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 Alide_3196 91c03d94a4ec08c233222652e86ad779 1022 Pfam PF10150 Ribonuclease E/G family 120 389 1.0E-94 T 12-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 Alide_3196 91c03d94a4ec08c233222652e86ad779 1022 SUPERFAMILY SSF50249 39 124 1.51E-18 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 7.5E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 7.5E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 7.5E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 SUPERFAMILY SSF51735 8 259 8.55E-77 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 Pfam PF00106 short chain dehydrogenase 14 207 5.1E-57 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 4.9E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.9E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 4.9E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 4.9E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 4.9E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 4.9E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1888 d7be507ed6f9a61a5d8afe5eed2472ce 263 Gene3D G3DSA:3.40.50.720 1 261 1.6E-79 T 12-10-2018 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 8.2E-33 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 91 101 8.2E-33 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 332 347 8.2E-33 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 281 294 8.2E-33 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 70 88 8.2E-33 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 258 276 8.2E-33 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 8.2E-33 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 Pfam PF13458 Periplasmic binding protein 28 366 4.8E-66 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 Gene3D G3DSA:3.40.50.2300 30 347 9.0E-113 T 12-10-2018 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 Gene3D G3DSA:3.40.50.2300 148 276 9.0E-113 T 12-10-2018 Alide_3162 239e8b9f17eb17dd8afbd58680ee911a 372 SUPERFAMILY SSF53822 29 367 7.06E-94 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2567 0a87765fe55466eaf81c946a51b29683 276 SMART SM00345 51 110 1.0E-22 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2567 0a87765fe55466eaf81c946a51b29683 276 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 84 100 3.9E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2567 0a87765fe55466eaf81c946a51b29683 276 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 70 84 3.9E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2567 0a87765fe55466eaf81c946a51b29683 276 SUPERFAMILY SSF46785 43 114 4.42E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2567 0a87765fe55466eaf81c946a51b29683 276 SUPERFAMILY SSF48008 131 267 3.4E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2567 0a87765fe55466eaf81c946a51b29683 276 Pfam PF07729 FCD domain 135 260 9.3E-26 T 12-10-2018 IPR011711 GntR, C-terminal Alide_2567 0a87765fe55466eaf81c946a51b29683 276 Gene3D G3DSA:1.20.120.530 125 273 3.0E-33 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2567 0a87765fe55466eaf81c946a51b29683 276 Gene3D G3DSA:1.10.10.10 44 111 4.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2567 0a87765fe55466eaf81c946a51b29683 276 Pfam PF00392 Bacterial regulatory proteins, gntR family 53 110 2.1E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2567 0a87765fe55466eaf81c946a51b29683 276 SMART SM00895 134 261 4.8E-24 T 12-10-2018 IPR011711 GntR, C-terminal Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 Gene3D G3DSA:3.30.2070.10 442 523 8.2E-140 T 12-10-2018 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 Gene3D G3DSA:2.40.40.20 549 691 1.2E-30 T 12-10-2018 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 Gene3D G3DSA:3.40.228.10 149 546 8.2E-140 T 12-10-2018 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 Pfam PF01568 Molydopterin dinucleotide binding domain 572 682 6.2E-21 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 Pfam PF00384 Molybdopterin oxidoreductase 72 482 2.3E-47 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 16 68 3.8E-9 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 SUPERFAMILY SSF53706 16 573 9.42E-159 T 12-10-2018 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 Gene3D G3DSA:2.20.25.90 14 73 7.0E-10 T 12-10-2018 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 SMART SM00926 14 69 7.4E-16 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 SUPERFAMILY SSF50692 530 686 7.69E-37 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 427 444 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Alide_0521 be0fa8981b1b57a4ffd0483141509d8e 691 Gene3D G3DSA:3.40.50.740 83 487 8.2E-140 T 12-10-2018 Alide_3674 0970f27a51ad8123413d86d2f30515e5 486 Pfam PF01523 Putative modulator of DNA gyrase 43 337 2.6E-69 T 12-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Alide_3674 0970f27a51ad8123413d86d2f30515e5 486 Gene3D G3DSA:3.30.2290.10 22 244 5.4E-22 T 12-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal Alide_3674 0970f27a51ad8123413d86d2f30515e5 486 SUPERFAMILY SSF111283 27 485 9.81E-134 T 12-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Alide_3674 0970f27a51ad8123413d86d2f30515e5 486 PIRSF PIRSF004919 23 486 4.3E-134 T 12-10-2018 IPR025502 TldD Alide_3905 a60eaa9f9cba8ded84df5d068ac7cfec 285 SUPERFAMILY SSF102215 33 270 9.42E-61 T 12-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 Alide_3905 a60eaa9f9cba8ded84df5d068ac7cfec 285 Pfam PF02633 Creatinine amidohydrolase 29 267 1.5E-59 T 12-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 Alide_3905 a60eaa9f9cba8ded84df5d068ac7cfec 285 Gene3D G3DSA:3.40.50.10310 9 272 9.1E-63 T 12-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 205 224 8.3E-58 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 259 275 8.3E-58 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 284 299 8.3E-58 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 136 150 8.3E-58 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 314 333 8.3E-58 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 167 186 8.3E-58 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 SMART SM01004 16 340 2.1E-241 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 SUPERFAMILY SSF51569 13 341 1.9E-144 T 12-10-2018 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 259 271 - T 12-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 Gene3D G3DSA:3.20.20.70 9 342 2.6E-145 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 PIRSF PIRSF001415 9 342 2.6E-146 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_0399 f98f9a1239a51ed653150a582a942c00 342 Pfam PF00490 Delta-aminolevulinic acid dehydratase 19 338 1.2E-139 T 12-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 SUPERFAMILY SSF53850 87 290 1.18E-36 T 12-10-2018 Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 Gene3D G3DSA:3.40.190.10 99 285 3.9E-48 T 12-10-2018 Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 2.9E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 Gene3D G3DSA:3.40.190.10 159 257 3.9E-48 T 12-10-2018 Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 Gene3D G3DSA:1.10.10.10 4 92 9.0E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 Pfam PF03466 LysR substrate binding domain 87 289 2.1E-33 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2374 b28f9bb51cd9012cffed5464cf02eb98 292 SUPERFAMILY SSF46785 5 110 2.32E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1149 8374ceb1dc11c488b86ef078b0d079ff 322 Pfam PF01882 Protein of unknown function DUF58 46 130 4.2E-20 T 12-10-2018 IPR002881 Domain of unknown function DUF58 Alide_0576 b750c6fd62c95488b69ec8497743b578 519 Pfam PF00501 AMP-binding enzyme 20 416 1.4E-92 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0576 b750c6fd62c95488b69ec8497743b578 519 SUPERFAMILY SSF56801 14 514 3.66E-136 T 12-10-2018 Alide_0576 b750c6fd62c95488b69ec8497743b578 519 ProSitePatterns PS00455 Putative AMP-binding domain signature. 168 179 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_0576 b750c6fd62c95488b69ec8497743b578 519 Gene3D G3DSA:3.40.50.12780 5 412 3.1E-100 T 12-10-2018 Alide_0576 b750c6fd62c95488b69ec8497743b578 519 Gene3D G3DSA:3.30.300.310 413 515 9.9E-30 T 12-10-2018 Alide_0576 b750c6fd62c95488b69ec8497743b578 519 Pfam PF13193 AMP-binding enzyme C-terminal domain 425 501 5.2E-19 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_3044 7cded429a5b3e8bc258b479558d60200 332 SMART SM00363 39 105 4.4E-9 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3044 7cded429a5b3e8bc258b479558d60200 332 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 157 171 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3044 7cded429a5b3e8bc258b479558d60200 332 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 36 325 8.9E-90 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3044 7cded429a5b3e8bc258b479558d60200 332 Pfam PF01479 S4 domain 40 86 1.0E-9 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3044 7cded429a5b3e8bc258b479558d60200 332 Pfam PF00849 RNA pseudouridylate synthase 114 270 3.6E-29 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3044 7cded429a5b3e8bc258b479558d60200 332 Gene3D G3DSA:3.10.290.10 28 95 1.5E-19 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Alide_3044 7cded429a5b3e8bc258b479558d60200 332 Gene3D G3DSA:3.30.2350.10 107 328 3.5E-73 T 12-10-2018 Alide_3044 7cded429a5b3e8bc258b479558d60200 332 SUPERFAMILY SSF55120 100 330 3.12E-74 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3044 7cded429a5b3e8bc258b479558d60200 332 SUPERFAMILY SSF55174 39 92 2.75E-11 T 12-10-2018 Alide_1368 83fbded9df7bdb367bde79ab6786b1be 248 Pfam PF00005 ABC transporter 17 165 1.9E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1368 83fbded9df7bdb367bde79ab6786b1be 248 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1368 83fbded9df7bdb367bde79ab6786b1be 248 SUPERFAMILY SSF52540 1 235 4.24E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1368 83fbded9df7bdb367bde79ab6786b1be 248 Gene3D G3DSA:3.40.50.300 1 243 4.3E-78 T 12-10-2018 Alide_1368 83fbded9df7bdb367bde79ab6786b1be 248 SMART SM00382 26 213 1.9E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1368 83fbded9df7bdb367bde79ab6786b1be 248 PIRSF PIRSF039085 1 241 1.2E-118 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Alide_2524 8d7b45507fdddad75a687c7d494fd24c 135 Pfam PF03928 Haem-degrading 7 130 9.8E-29 T 12-10-2018 IPR005624 Haem-degrading Alide_2524 8d7b45507fdddad75a687c7d494fd24c 135 SUPERFAMILY SSF143744 2 134 1.96E-35 T 12-10-2018 IPR038084 GlcG-like domain superfamily Alide_2524 8d7b45507fdddad75a687c7d494fd24c 135 Gene3D G3DSA:3.30.450.150 1 135 7.1E-37 T 12-10-2018 IPR038084 GlcG-like domain superfamily Alide_2205 dfa01a9c91a2cd40f2482bb763ff513d 398 PRINTS PR00799 Aspartate aminotransferase signature 177 196 7.1E-36 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Alide_2205 dfa01a9c91a2cd40f2482bb763ff513d 398 PRINTS PR00799 Aspartate aminotransferase signature 275 300 7.1E-36 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Alide_2205 dfa01a9c91a2cd40f2482bb763ff513d 398 PRINTS PR00799 Aspartate aminotransferase signature 208 220 7.1E-36 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Alide_2205 dfa01a9c91a2cd40f2482bb763ff513d 398 PRINTS PR00799 Aspartate aminotransferase signature 343 361 7.1E-36 T 12-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 Alide_2205 dfa01a9c91a2cd40f2482bb763ff513d 398 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 245 258 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Alide_2205 dfa01a9c91a2cd40f2482bb763ff513d 398 Pfam PF00155 Aminotransferase class I and II 30 394 1.2E-84 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_2205 dfa01a9c91a2cd40f2482bb763ff513d 398 SUPERFAMILY SSF53383 1 398 1.75E-121 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2205 dfa01a9c91a2cd40f2482bb763ff513d 398 Gene3D G3DSA:3.90.1150.10 7 394 4.1E-163 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2205 dfa01a9c91a2cd40f2482bb763ff513d 398 Gene3D G3DSA:3.40.640.10 62 302 4.1E-163 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2959 35ac1c5af0b6cbf5afd1607cc64776d7 335 Gene3D G3DSA:3.40.190.150 37 325 1.0E-75 T 12-10-2018 Alide_2959 35ac1c5af0b6cbf5afd1607cc64776d7 335 PIRSF PIRSF017082 4 334 2.3E-52 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2959 35ac1c5af0b6cbf5afd1607cc64776d7 335 SUPERFAMILY SSF53850 126 295 5.86E-6 T 12-10-2018 Alide_2959 35ac1c5af0b6cbf5afd1607cc64776d7 335 Gene3D G3DSA:3.40.190.10 133 259 1.0E-75 T 12-10-2018 Alide_2959 35ac1c5af0b6cbf5afd1607cc64776d7 335 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 331 3.4E-44 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2246 7fada8fb5d9f03efc88a35e2565e7af9 472 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 418 1.8E-77 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 Alide_2246 7fada8fb5d9f03efc88a35e2565e7af9 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 400 419 1.5E-8 T 12-10-2018 Alide_2246 7fada8fb5d9f03efc88a35e2565e7af9 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 138 162 1.5E-8 T 12-10-2018 Alide_2246 7fada8fb5d9f03efc88a35e2565e7af9 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 1.5E-8 T 12-10-2018 Alide_2246 7fada8fb5d9f03efc88a35e2565e7af9 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 108 128 1.5E-8 T 12-10-2018 Alide_2246 7fada8fb5d9f03efc88a35e2565e7af9 472 SUPERFAMILY SSF103473 4 463 9.94E-64 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_2246 7fada8fb5d9f03efc88a35e2565e7af9 472 Gene3D G3DSA:1.20.1720.10 14 273 7.7E-49 T 12-10-2018 Alide_2246 7fada8fb5d9f03efc88a35e2565e7af9 472 Pfam PF07690 Major Facilitator Superfamily 18 409 3.7E-48 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_2246 7fada8fb5d9f03efc88a35e2565e7af9 472 Gene3D G3DSA:1.20.1250.20 274 462 9.9E-17 T 12-10-2018 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 SUPERFAMILY SSF55008 17 89 1.23E-22 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 ProSitePatterns PS01047 Heavy-metal-associated domain. 28 57 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 TIGRFAM TIGR02052 MerP: mercuric transport protein periplasmic component 1 91 5.4E-45 T 12-10-2018 IPR011795 Mercuric transport protein periplasmic component GO:0015097|GO:0015694|GO:0042597|GO:0045340|GO:0046689 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 Pfam PF00403 Heavy-metal-associated domain 25 85 7.8E-17 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 PRINTS PR00946 Mercury scavenger protein signature 76 90 3.3E-58 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 PRINTS PR00946 Mercury scavenger protein signature 2 20 3.3E-58 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 PRINTS PR00946 Mercury scavenger protein signature 31 47 3.3E-58 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 PRINTS PR00946 Mercury scavenger protein signature 47 62 3.3E-58 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 PRINTS PR00946 Mercury scavenger protein signature 62 76 3.3E-58 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 PRINTS PR00946 Mercury scavenger protein signature 20 31 3.3E-58 T 12-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 Alide_4501 6dcfeae12c67bd8e0efcc9169ccaf92d 91 Gene3D G3DSA:3.30.70.100 20 91 4.7E-24 T 12-10-2018 Alide_0169 423df3a910e24df9cbfc3c6d9fab6aac 307 Gene3D G3DSA:3.40.190.290 90 294 2.7E-46 T 12-10-2018 Alide_0169 423df3a910e24df9cbfc3c6d9fab6aac 307 SUPERFAMILY SSF46785 1 110 3.44E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0169 423df3a910e24df9cbfc3c6d9fab6aac 307 SUPERFAMILY SSF53850 89 298 1.25E-32 T 12-10-2018 Alide_0169 423df3a910e24df9cbfc3c6d9fab6aac 307 Gene3D G3DSA:1.10.10.10 1 89 4.5E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0169 423df3a910e24df9cbfc3c6d9fab6aac 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.4E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0169 423df3a910e24df9cbfc3c6d9fab6aac 307 Pfam PF03466 LysR substrate binding domain 88 293 8.0E-32 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 SUPERFAMILY SSF53244 312 464 2.93E-46 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 Pfam PF08245 Mur ligase middle domain 110 293 2.8E-26 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 5 466 42.686 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 404 2.1E-17 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 Gene3D G3DSA:3.40.50.720 6 92 2.2E-31 T 12-10-2018 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 Gene3D G3DSA:3.40.1190.10 94 310 3.0E-76 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 SUPERFAMILY SSF51984 6 92 2.88E-29 T 12-10-2018 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 SUPERFAMILY SSF53623 91 310 1.22E-69 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 Pfam PF01225 Mur ligase family, catalytic domain 7 104 3.6E-27 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 7 459 1.7E-163 T 12-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3705 1f9e7718fed2bd8159417b0b2222e3bc 477 Gene3D G3DSA:3.90.190.20 311 476 8.1E-46 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_1599 6bdca710dd807b4d242b9c8bbbcd5195 393 Gene3D G3DSA:3.40.47.10 5 392 4.1E-94 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1599 6bdca710dd807b4d242b9c8bbbcd5195 393 PIRSF PIRSF000429 4 388 6.0E-19 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_1599 6bdca710dd807b4d242b9c8bbbcd5195 393 SUPERFAMILY SSF53901 10 232 4.12E-20 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1599 6bdca710dd807b4d242b9c8bbbcd5195 393 SUPERFAMILY SSF53901 235 373 2.43E-18 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 SUPERFAMILY SSF48557 10 458 8.17E-101 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 Gene3D G3DSA:1.10.275.10 1 116 1.2E-40 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 PRINTS PR00149 Fumarate lyase superfamily signature 162 180 3.3E-20 T 12-10-2018 IPR000362 Fumarate lyase family Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 PRINTS PR00149 Fumarate lyase superfamily signature 298 314 3.3E-20 T 12-10-2018 IPR000362 Fumarate lyase family Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 PRINTS PR00149 Fumarate lyase superfamily signature 255 282 3.3E-20 T 12-10-2018 IPR000362 Fumarate lyase family Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 PRINTS PR00149 Fumarate lyase superfamily signature 116 134 3.3E-20 T 12-10-2018 IPR000362 Fumarate lyase family Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 Pfam PF00206 Lyase 14 316 3.0E-56 T 12-10-2018 IPR022761 Fumarate lyase, N-terminal Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 ProSitePatterns PS00163 Fumarate lyases signature. 298 307 - T 12-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 Gene3D G3DSA:1.20.200.10 117 450 1.4E-142 T 12-10-2018 Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 458 1.5E-117 T 12-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 Pfam PF08328 Adenylosuccinate lyase C-terminal 335 449 2.7E-47 T 12-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 Alide_4247 0f24aec1603322e4ada51e004ef59b13 459 Gene3D G3DSA:1.10.40.30 386 449 1.4E-142 T 12-10-2018 Alide_1183 3f09edbaf4abc681621a96169c8d97f8 193 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 138 161 - T 12-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_1183 3f09edbaf4abc681621a96169c8d97f8 193 SUPERFAMILY SSF53328 2 191 8.77E-59 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_1183 3f09edbaf4abc681621a96169c8d97f8 193 Gene3D G3DSA:3.40.50.170 2 193 1.1E-71 T 12-10-2018 Alide_1183 3f09edbaf4abc681621a96169c8d97f8 193 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 192 30.296 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Alide_1183 3f09edbaf4abc681621a96169c8d97f8 193 Pfam PF00551 Formyl transferase 2 186 1.8E-55 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_1183 3f09edbaf4abc681621a96169c8d97f8 193 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 192 1.8E-68 T 12-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Alide_0545 80b87ddfda31605b1e6ae56ac761f75b 261 SUPERFAMILY SSF52540 9 258 7.62E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0545 80b87ddfda31605b1e6ae56ac761f75b 261 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 236 258 6.4E-9 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_0545 80b87ddfda31605b1e6ae56ac761f75b 261 Gene3D G3DSA:3.40.50.300 2 258 1.2E-58 T 12-10-2018 Alide_0545 80b87ddfda31605b1e6ae56ac761f75b 261 Pfam PF00005 ABC transporter 26 187 2.6E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0545 80b87ddfda31605b1e6ae56ac761f75b 261 SMART SM00382 35 236 1.2E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1591 8824c52abe7ed43e22f56b6b7f9c8c76 220 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 8 168 7.8E-62 T 12-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Alide_1591 8824c52abe7ed43e22f56b6b7f9c8c76 220 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 40 125 4.9E-24 T 12-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Alide_1591 8824c52abe7ed43e22f56b6b7f9c8c76 220 SUPERFAMILY SSF50475 20 168 6.36E-47 T 12-10-2018 Alide_1591 8824c52abe7ed43e22f56b6b7f9c8c76 220 Gene3D G3DSA:2.30.110.10 15 196 3.3E-60 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Alide_0597 69b6309be8f48b58b4bb0ae09e940018 64 Pfam PF11146 Protein of unknown function (DUF2905) 3 63 4.1E-19 T 12-10-2018 IPR021320 Protein of unknown function DUF2905 Alide_4516 e2ef7b77d5fbad5790c4379c8eb10abc 234 PIRSF PIRSF009320 7 234 2.0E-36 T 12-10-2018 Alide_4516 e2ef7b77d5fbad5790c4379c8eb10abc 234 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 10 191 8.3E-13 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_4516 e2ef7b77d5fbad5790c4379c8eb10abc 234 Gene3D G3DSA:3.40.50.300 8 226 1.7E-42 T 12-10-2018 Alide_4516 e2ef7b77d5fbad5790c4379c8eb10abc 234 SUPERFAMILY SSF52540 7 225 1.17E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1947 1afb491cf425c8cfe7cfa570ed7edb2a 174 Gene3D G3DSA:1.10.1740.10 2 64 7.4E-25 T 12-10-2018 Alide_1947 1afb491cf425c8cfe7cfa570ed7edb2a 174 SUPERFAMILY SSF88659 93 153 4.11E-17 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_1947 1afb491cf425c8cfe7cfa570ed7edb2a 174 Pfam PF04542 Sigma-70 region 2 9 68 2.7E-12 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Alide_1947 1afb491cf425c8cfe7cfa570ed7edb2a 174 SUPERFAMILY SSF88946 7 77 1.49E-14 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_1947 1afb491cf425c8cfe7cfa570ed7edb2a 174 Gene3D G3DSA:1.10.10.10 93 156 8.7E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1947 1afb491cf425c8cfe7cfa570ed7edb2a 174 Pfam PF08281 Sigma-70, region 4 97 148 1.2E-16 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_1947 1afb491cf425c8cfe7cfa570ed7edb2a 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 151 5.0E-18 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_1439 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1439 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1439 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3768 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_3768 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3768 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1530 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1530 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1530 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1136 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1136 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1136 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2127 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_2127 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2127 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0922 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_0922 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0922 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1838 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1838 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1838 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2880 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_2880 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2880 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1875 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1875 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1875 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1821 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1821 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1821 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2712 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_2712 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2712 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0726 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_0726 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0726 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1481 938dbe673f6e9fc3b3703149aad32266 107 Pfam PF01527 Transposase 1 86 3.5E-8 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1481 938dbe673f6e9fc3b3703149aad32266 107 SUPERFAMILY SSF46689 4 98 7.17E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1481 938dbe673f6e9fc3b3703149aad32266 107 Gene3D G3DSA:1.10.10.10 1 66 1.7E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2565 2e67564f0401c0c9f4dd14c34179c2d6 332 Gene3D G3DSA:3.40.190.10 132 257 3.9E-112 T 12-10-2018 Alide_2565 2e67564f0401c0c9f4dd14c34179c2d6 332 Gene3D G3DSA:3.40.190.150 36 322 3.9E-112 T 12-10-2018 Alide_2565 2e67564f0401c0c9f4dd14c34179c2d6 332 PIRSF PIRSF017082 1 332 2.0E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2565 2e67564f0401c0c9f4dd14c34179c2d6 332 SUPERFAMILY SSF53850 111 299 7.25E-17 T 12-10-2018 Alide_2565 2e67564f0401c0c9f4dd14c34179c2d6 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 328 1.1E-86 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1604 f655234f1fe33655acce27ce4497b93d 335 Gene3D G3DSA:3.40.50.2300 58 308 4.8E-62 T 12-10-2018 Alide_1604 f655234f1fe33655acce27ce4497b93d 335 Gene3D G3DSA:1.10.260.40 1 57 4.8E-22 T 12-10-2018 Alide_1604 f655234f1fe33655acce27ce4497b93d 335 SUPERFAMILY SSF47413 4 62 4.97E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_1604 f655234f1fe33655acce27ce4497b93d 335 Pfam PF13377 Periplasmic binding protein-like domain 171 332 1.0E-25 T 12-10-2018 Alide_1604 f655234f1fe33655acce27ce4497b93d 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 9.8E-16 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Alide_1604 f655234f1fe33655acce27ce4497b93d 335 SUPERFAMILY SSF53822 63 333 4.12E-52 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_1604 f655234f1fe33655acce27ce4497b93d 335 SMART SM00354 4 74 2.4E-24 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Alide_1604 f655234f1fe33655acce27ce4497b93d 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 12-10-2018 Alide_1604 f655234f1fe33655acce27ce4497b93d 335 Gene3D G3DSA:3.40.50.2300 162 291 4.8E-62 T 12-10-2018 Alide_0055 cc07124476ad0524e2635a0f38f2dbb8 259 Gene3D G3DSA:3.40.50.150 95 243 1.2E-15 T 12-10-2018 Alide_0055 cc07124476ad0524e2635a0f38f2dbb8 259 SUPERFAMILY SSF53335 87 221 3.92E-13 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2276 2bc6cb637a22f860de3f0e30b5a3f360 352 SUPERFAMILY SSF81301 16 213 5.07E-32 T 12-10-2018 Alide_2276 2bc6cb637a22f860de3f0e30b5a3f360 352 Pfam PF04607 Region found in RelA / SpoT proteins 53 185 1.9E-19 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 Alide_2276 2bc6cb637a22f860de3f0e30b5a3f360 352 SMART SM00954 53 188 6.4E-20 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 Alide_2276 2bc6cb637a22f860de3f0e30b5a3f360 352 Gene3D G3DSA:1.10.287.860 171 215 1.1E-5 T 12-10-2018 Alide_2276 2bc6cb637a22f860de3f0e30b5a3f360 352 Gene3D G3DSA:3.30.460.10 6 169 1.9E-20 T 12-10-2018 Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 Pfam PF02142 MGS-like domain 12 126 3.0E-30 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 Gene3D G3DSA:3.40.50.1380 1 195 1.9E-83 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 SUPERFAMILY SSF52335 2 190 1.1E-67 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 Gene3D G3DSA:3.40.140.20 216 367 1.9E-58 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 SMART SM00851 12 127 4.5E-61 T 12-10-2018 IPR011607 Methylglyoxal synthase-like domain Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2 532 2.4E-215 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 Gene3D G3DSA:3.40.140.20 395 532 5.0E-57 T 12-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 SMART SM00798 132 464 9.3E-191 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 Pfam PF01808 AICARFT/IMPCHase bienzyme 132 462 2.2E-113 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 PIRSF PIRSF000414 1 532 1.3E-208 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 SUPERFAMILY SSF53927 218 532 1.81E-124 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Alide_3637 8eec3a592b0fc761d8d448ae2fc66217 532 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 1 532 42.616 T 12-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_2138 2e6f1578a7ab5563c71687a40c9566f1 234 Gene3D G3DSA:1.10.10.200 15 75 3.9E-22 T 12-10-2018 IPR017856 Integrase-like, N-terminal Alide_2138 2e6f1578a7ab5563c71687a40c9566f1 234 Gene3D G3DSA:3.30.70.980 125 195 2.1E-36 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2138 2e6f1578a7ab5563c71687a40c9566f1 234 Pfam PF01709 Transcriptional regulator 9 229 3.5E-64 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2138 2e6f1578a7ab5563c71687a40c9566f1 234 Gene3D G3DSA:3.30.70.980 81 229 2.1E-36 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2138 2e6f1578a7ab5563c71687a40c9566f1 234 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 234 22.879 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2138 2e6f1578a7ab5563c71687a40c9566f1 234 SUPERFAMILY SSF75625 4 231 1.7E-61 T 12-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0573 1a6afab4e60cdeaf67bebe2e795495bb 323 SUPERFAMILY SSF53850 111 283 1.34E-10 T 12-10-2018 Alide_0573 1a6afab4e60cdeaf67bebe2e795495bb 323 Gene3D G3DSA:3.40.190.10 122 245 5.1E-97 T 12-10-2018 Alide_0573 1a6afab4e60cdeaf67bebe2e795495bb 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 318 6.4E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0573 1a6afab4e60cdeaf67bebe2e795495bb 323 Gene3D G3DSA:3.40.190.150 25 312 5.1E-97 T 12-10-2018 Alide_0573 1a6afab4e60cdeaf67bebe2e795495bb 323 PIRSF PIRSF017082 2 322 8.3E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4620 5e16a47b86bb1e2b7bb0f537d3992af8 251 SUPERFAMILY SSF52540 94 238 1.23E-25 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4620 5e16a47b86bb1e2b7bb0f537d3992af8 251 Gene3D G3DSA:3.40.50.300 62 248 2.4E-46 T 12-10-2018 Alide_4620 5e16a47b86bb1e2b7bb0f537d3992af8 251 SMART SM00382 98 230 6.6E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4620 5e16a47b86bb1e2b7bb0f537d3992af8 251 Pfam PF01695 IstB-like ATP binding protein 57 229 4.7E-66 T 12-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Alide_4620 5e16a47b86bb1e2b7bb0f537d3992af8 251 PIRSF PIRSF003073 1 250 1.2E-68 T 12-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Alide_4620 5e16a47b86bb1e2b7bb0f537d3992af8 251 Pfam PF08483 IstB-like ATP binding N-terminal 24 52 3.4E-11 T 12-10-2018 IPR013690 IstB-like ATP binding N-terminal Alide_4465 bcd91cc50ac14e3a6b696d6cfaecbcea 238 Gene3D G3DSA:1.20.1050.10 90 226 6.0E-38 T 12-10-2018 Alide_4465 bcd91cc50ac14e3a6b696d6cfaecbcea 238 Pfam PF13410 Glutathione S-transferase, C-terminal domain 127 193 1.9E-11 T 12-10-2018 Alide_4465 bcd91cc50ac14e3a6b696d6cfaecbcea 238 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 80 3.0E-12 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_4465 bcd91cc50ac14e3a6b696d6cfaecbcea 238 SUPERFAMILY SSF47616 88 205 4.87E-29 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_4465 bcd91cc50ac14e3a6b696d6cfaecbcea 238 Gene3D G3DSA:3.40.30.10 1 89 1.7E-29 T 12-10-2018 Alide_4465 bcd91cc50ac14e3a6b696d6cfaecbcea 238 SUPERFAMILY SSF52833 1 83 4.17E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3498 d055032e1aa13761aaaae4da6d8ea5ca 287 Pfam PF13714 Phosphoenolpyruvate phosphomutase 7 248 1.3E-54 T 12-10-2018 Alide_3498 d055032e1aa13761aaaae4da6d8ea5ca 287 ProSitePatterns PS00161 Isocitrate lyase signature. 116 121 - T 12-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 Alide_3498 d055032e1aa13761aaaae4da6d8ea5ca 287 Gene3D G3DSA:3.20.20.60 1 285 9.7E-102 T 12-10-2018 Alide_3498 d055032e1aa13761aaaae4da6d8ea5ca 287 SUPERFAMILY SSF51621 3 283 1.03E-87 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 Pfam PF03023 MviN-like protein 28 478 5.9E-123 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 PRINTS PR01806 Virulence factor MviN signature 33 52 5.3E-72 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 PRINTS PR01806 Virulence factor MviN signature 133 157 5.3E-72 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 PRINTS PR01806 Virulence factor MviN signature 157 178 5.3E-72 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 PRINTS PR01806 Virulence factor MviN signature 270 296 5.3E-72 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 PRINTS PR01806 Virulence factor MviN signature 52 68 5.3E-72 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 PRINTS PR01806 Virulence factor MviN signature 420 437 5.3E-72 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 PRINTS PR01806 Virulence factor MviN signature 368 387 5.3E-72 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 478 19.05 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 PIRSF PIRSF002869 1 521 7.4E-141 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_1395 addc6194d6cbbd65fd032bf9cd22a5cf 521 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 509 1.1E-127 T 12-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Alide_0497 fcb316db1a7a4346c1ad2e7f2f6ebe0c 433 Pfam PF04286 Protein of unknown function (DUF445) 50 422 2.0E-93 T 12-10-2018 IPR007383 Protein of unknown function DUF445 Alide_0982 e44d6e02af692f61f735b1771365d0dd 319 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 8 318 48.387 T 12-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 Alide_0982 e44d6e02af692f61f735b1771365d0dd 319 Pfam PF14572 Phosphoribosyl synthetase-associated domain 207 317 2.4E-31 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Alide_0982 e44d6e02af692f61f735b1771365d0dd 319 Gene3D G3DSA:3.40.50.2020 152 294 9.9E-132 T 12-10-2018 Alide_0982 e44d6e02af692f61f735b1771365d0dd 319 SMART SM01400 8 125 2.5E-72 T 12-10-2018 Alide_0982 e44d6e02af692f61f735b1771365d0dd 319 Gene3D G3DSA:3.40.50.2020 11 306 9.9E-132 T 12-10-2018 Alide_0982 e44d6e02af692f61f735b1771365d0dd 319 SUPERFAMILY SSF53271 73 308 2.97E-66 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_0982 e44d6e02af692f61f735b1771365d0dd 319 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 10 318 1.5E-125 T 12-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Alide_0982 e44d6e02af692f61f735b1771365d0dd 319 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 133 148 - T 12-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 Alide_0982 e44d6e02af692f61f735b1771365d0dd 319 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 10 125 4.0E-47 T 12-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Alide_3752 08e132273887bfde5a11c55f364d5ffc 310 SUPERFAMILY SSF52467 189 310 1.2E-44 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_3752 08e132273887bfde5a11c55f364d5ffc 310 SUPERFAMILY SSF52402 3 186 6.14E-55 T 12-10-2018 Alide_3752 08e132273887bfde5a11c55f364d5ffc 310 SMART SM00893 3 182 2.0E-56 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_3752 08e132273887bfde5a11c55f364d5ffc 310 Pfam PF01012 Electron transfer flavoprotein domain 4 169 4.6E-36 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_3752 08e132273887bfde5a11c55f364d5ffc 310 Gene3D G3DSA:3.40.50.620 3 183 2.5E-54 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3752 08e132273887bfde5a11c55f364d5ffc 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 1.3E-34 T 12-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Alide_3752 08e132273887bfde5a11c55f364d5ffc 310 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 12-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 Alide_3752 08e132273887bfde5a11c55f364d5ffc 310 Gene3D G3DSA:3.40.50.1220 184 310 7.0E-56 T 12-10-2018 Alide_3752 08e132273887bfde5a11c55f364d5ffc 310 PIRSF PIRSF000089 1 310 2.8E-104 T 12-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Alide_2360 08e132273887bfde5a11c55f364d5ffc 310 SUPERFAMILY SSF52467 189 310 1.2E-44 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_2360 08e132273887bfde5a11c55f364d5ffc 310 SUPERFAMILY SSF52402 3 186 6.14E-55 T 12-10-2018 Alide_2360 08e132273887bfde5a11c55f364d5ffc 310 SMART SM00893 3 182 2.0E-56 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_2360 08e132273887bfde5a11c55f364d5ffc 310 Pfam PF01012 Electron transfer flavoprotein domain 4 169 4.6E-36 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_2360 08e132273887bfde5a11c55f364d5ffc 310 Gene3D G3DSA:3.40.50.620 3 183 2.5E-54 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2360 08e132273887bfde5a11c55f364d5ffc 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 1.3E-34 T 12-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Alide_2360 08e132273887bfde5a11c55f364d5ffc 310 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 12-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 Alide_2360 08e132273887bfde5a11c55f364d5ffc 310 Gene3D G3DSA:3.40.50.1220 184 310 7.0E-56 T 12-10-2018 Alide_2360 08e132273887bfde5a11c55f364d5ffc 310 PIRSF PIRSF000089 1 310 2.8E-104 T 12-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Alide_0254 c9f52c292eb4a97cdf77305b6b20850d 109 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 19 95 9.8E-9 T 12-10-2018 IPR009241 Toxin HigB-like Alide_0254 c9f52c292eb4a97cdf77305b6b20850d 109 PIRSF PIRSF028744 1 108 1.1E-42 T 12-10-2018 IPR014056 Addiction module killer protein, predicted Alide_0254 c9f52c292eb4a97cdf77305b6b20850d 109 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 12 103 8.3E-38 T 12-10-2018 IPR014056 Addiction module killer protein, predicted Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 Gene3D G3DSA:3.30.450.40 98 329 1.1E-40 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 323 27.91 T 12-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 Gene3D G3DSA:1.10.10.10 1 85 1.8E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 3 329 4.5E-93 T 12-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 SUPERFAMILY SSF55781 71 332 3.92E-62 T 12-10-2018 Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 PIRSF PIRSF005485 1 334 6.1E-107 T 12-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 SUPERFAMILY SSF46785 1 83 1.02E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 Pfam PF01628 HrcA protein C terminal domain 97 316 3.1E-59 T 12-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 4 73 4.3E-6 T 12-10-2018 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 Alide_0992 c4667cc64a14ef8f24738e26640372b1 334 Gene3D G3DSA:3.30.390.60 121 220 1.1E-40 T 12-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 Pfam PF03466 LysR substrate binding domain 89 297 8.6E-35 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.2E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 Gene3D G3DSA:3.40.190.10 165 273 4.6E-42 T 12-10-2018 Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 Gene3D G3DSA:3.40.190.10 91 292 4.6E-42 T 12-10-2018 Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 Gene3D G3DSA:1.10.10.10 3 90 2.1E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 SUPERFAMILY SSF53850 90 298 2.39E-33 T 12-10-2018 Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.4E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.4E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.4E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2105 d8bd9d44955cbdb7621a6a22b24d055a 305 SUPERFAMILY SSF46785 5 85 5.84E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0210 c47ec4a08bd823515df27e2792b278fd 326 Pfam PF03524 Conjugal transfer protein 100 319 2.3E-65 T 12-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX Alide_0210 c47ec4a08bd823515df27e2792b278fd 326 TIGRFAM TIGR02775 TrbG_Ti: P-type conjugative transfer protein TrbG 101 308 1.3E-90 T 12-10-2018 IPR014142 P-type conjugative transfer protein TrbG Alide_0210 c47ec4a08bd823515df27e2792b278fd 326 Gene3D G3DSA:2.60.40.2500 226 322 5.2E-7 T 12-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily Alide_0084 79e2def51203e9bce122b691bec3a5c8 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 246 1.8E-44 T 12-10-2018 Alide_0084 79e2def51203e9bce122b691bec3a5c8 253 Gene3D G3DSA:3.40.50.720 1 249 7.4E-63 T 12-10-2018 Alide_0084 79e2def51203e9bce122b691bec3a5c8 253 SUPERFAMILY SSF51735 4 246 9.81E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0084 79e2def51203e9bce122b691bec3a5c8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.4E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0084 79e2def51203e9bce122b691bec3a5c8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.4E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0084 79e2def51203e9bce122b691bec3a5c8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.4E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0084 79e2def51203e9bce122b691bec3a5c8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.4E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0084 79e2def51203e9bce122b691bec3a5c8 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.4E-29 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 SMART SM00028 216 249 7.9E-5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 SMART SM00028 148 181 0.11 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 SMART SM00028 80 113 5.6E-5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 SMART SM00028 250 283 20.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 SMART SM00028 46 79 0.003 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 SMART SM00028 182 215 9.3E-5 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 SMART SM00028 114 147 0.07 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Pfam PF13414 TPR repeat 53 94 9.6E-8 T 12-10-2018 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Pfam PF13432 Tetratricopeptide repeat 118 173 0.017 T 12-10-2018 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Pfam PF13432 Tetratricopeptide repeat 187 249 2.5E-8 T 12-10-2018 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 SUPERFAMILY SSF48452 43 255 3.79E-39 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Pfam PF13844 Glycosyl transferase family 41 527 719 5.9E-52 T 12-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Pfam PF13844 Glycosyl transferase family 41 366 519 5.8E-38 T 12-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 SUPERFAMILY SSF53756 488 716 4.39E-5 T 12-10-2018 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Gene3D G3DSA:1.25.40.10 123 194 1.4E-17 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Gene3D G3DSA:3.40.50.11380 359 709 4.7E-150 T 12-10-2018 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Gene3D G3DSA:1.25.40.10 255 321 9.8E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Gene3D G3DSA:1.25.40.10 86 122 1.1E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Gene3D G3DSA:1.25.40.10 41 85 5.4E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Gene3D G3DSA:3.40.50.2000 523 702 4.7E-150 T 12-10-2018 Alide_0520 03e6ba833cda6c13b364f5731c662a68 734 Gene3D G3DSA:1.25.40.10 195 254 3.5E-12 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_3955 2f133188198a3c4ecedbf85683c71401 143 Gene3D G3DSA:4.10.520.10 45 143 5.2E-11 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_3955 2f133188198a3c4ecedbf85683c71401 143 SMART SM00411 46 143 3.7E-6 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_3955 2f133188198a3c4ecedbf85683c71401 143 SUPERFAMILY SSF47729 47 141 2.21E-12 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_3955 2f133188198a3c4ecedbf85683c71401 143 Pfam PF00216 Bacterial DNA-binding protein 47 141 3.0E-14 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 SMART SM00267 513 692 6.6E-37 T 12-10-2018 IPR000160 GGDEF domain Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 Gene3D G3DSA:3.30.450.20 400 515 1.4E-19 T 12-10-2018 Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 Pfam PF00990 Diguanylate cyclase, GGDEF domain 525 688 2.4E-34 T 12-10-2018 IPR000160 GGDEF domain Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 SUPERFAMILY SSF55073 529 691 2.9E-36 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 SUPERFAMILY SSF55785 398 511 1.33E-14 T 12-10-2018 IPR035965 PAS domain superfamily Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 Pfam PF08447 PAS fold 424 495 4.0E-8 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 SMART SM00091 400 465 8.4E-5 T 12-10-2018 IPR000014 PAS domain Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 399 517 2.2E-8 T 12-10-2018 IPR000014 PAS domain Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 Gene3D G3DSA:3.30.70.270 519 694 2.9E-45 T 12-10-2018 Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 523 690 9.5E-34 T 12-10-2018 IPR000160 GGDEF domain Alide_1361 f0c2f71c107dc264a8a6892a242491de 698 Gene3D G3DSA:3.30.450.20 56 201 3.1E-9 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 Gene3D G3DSA:3.40.1110.10 349 553 1.2E-288 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 Pfam PF00122 E1-E2 ATPase 126 319 3.0E-52 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 SMART SM00831 17 91 1.3E-33 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 341 347 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 SUPERFAMILY SSF56784 337 751 1.65E-58 T 12-10-2018 IPR036412 HAD-like superfamily Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 339 353 8.8E-40 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 546 557 8.8E-40 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 568 578 8.8E-40 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 671 683 8.8E-40 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 176 190 8.8E-40 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 647 666 8.8E-40 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 Pfam PF00689 Cation transporting ATPase, C-terminus 732 903 2.8E-44 T 12-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 614 737 6.9E-34 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 98 360 7.1E-42 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 SUPERFAMILY SSF81665 16 909 2.09E-124 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 SUPERFAMILY SSF81660 346 549 6.1E-53 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 Gene3D G3DSA:2.70.150.10 30 241 1.2E-288 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 SUPERFAMILY SSF81653 128 236 4.97E-28 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 PRINTS PR00121 Sodium/potassium-transporting ATPase signature 332 353 1.8E-15 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 PRINTS PR00121 Sodium/potassium-transporting ATPase signature 470 488 1.8E-15 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 PRINTS PR00121 Sodium/potassium-transporting ATPase signature 259 281 1.8E-15 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 Pfam PF00690 Cation transporter/ATPase, N-terminus 18 85 3.7E-18 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 Gene3D G3DSA:3.40.50.1000 336 692 1.2E-288 T 12-10-2018 IPR023214 HAD superfamily Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 Gene3D G3DSA:1.20.1110.10 69 903 1.2E-288 T 12-10-2018 Alide_1923 20fa7cd6ba2134b9c3b003709a125c33 918 Pfam PF00702 haloacid dehalogenase-like hydrolase 336 661 1.1E-20 T 12-10-2018 Alide_2706 7a00c0e0114bb856301a748e10590ad1 77 Pfam PF10982 Protein of unknown function (DUF2789) 1 75 1.8E-32 T 12-10-2018 IPR021250 Protein of unknown function DUF2789 Alide_2706 7a00c0e0114bb856301a748e10590ad1 77 Gene3D G3DSA:1.10.10.1130 1 77 7.3E-32 T 12-10-2018 Alide_3912 5def31c4d3a465c6550b3610758fd206 702 Pfam PF00271 Helicase conserved C-terminal domain 464 547 1.4E-5 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_3912 5def31c4d3a465c6550b3610758fd206 702 SMART SM00487 141 344 2.6E-15 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_3912 5def31c4d3a465c6550b3610758fd206 702 TIGRFAM TIGR00595 priA: primosomal protein N' 164 699 8.1E-152 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Alide_3912 5def31c4d3a465c6550b3610758fd206 702 Hamap MF_00983 Probable primosomal protein N' [priA]. 15 702 21.075 T 12-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Alide_3912 5def31c4d3a465c6550b3610758fd206 702 Gene3D G3DSA:3.40.50.300 132 330 7.3E-62 T 12-10-2018 Alide_3912 5def31c4d3a465c6550b3610758fd206 702 Gene3D G3DSA:1.10.8.630 7 120 3.5E-14 T 12-10-2018 Alide_3912 5def31c4d3a465c6550b3610758fd206 702 SUPERFAMILY SSF52540 159 550 4.14E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3912 5def31c4d3a465c6550b3610758fd206 702 SMART SM00490 444 549 5.7E-4 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_3912 5def31c4d3a465c6550b3610758fd206 702 Pfam PF00270 DEAD/DEAH box helicase 152 310 3.8E-12 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_4191 5729a6f515237b8e0f71f7e094288657 383 SUPERFAMILY SSF53901 7 223 4.01E-27 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_4191 5729a6f515237b8e0f71f7e094288657 383 Gene3D G3DSA:3.40.47.10 5 382 1.8E-95 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_4191 5729a6f515237b8e0f71f7e094288657 383 PIRSF PIRSF000429 3 381 1.1E-28 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_4191 5729a6f515237b8e0f71f7e094288657 383 Pfam PF00108 Thiolase, N-terminal domain 14 223 8.7E-7 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_4191 5729a6f515237b8e0f71f7e094288657 383 SUPERFAMILY SSF53901 228 356 7.86E-19 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1287 83ef10f3e73774a0c6f460504060f7cb 796 Gene3D G3DSA:1.10.10.160 122 194 4.0E-89 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily Alide_1287 83ef10f3e73774a0c6f460504060f7cb 796 Pfam PF00580 UvrD/REP helicase N-terminal domain 18 286 1.9E-70 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Alide_1287 83ef10f3e73774a0c6f460504060f7cb 796 Gene3D G3DSA:3.40.50.300 580 694 2.5E-34 T 12-10-2018 Alide_1287 83ef10f3e73774a0c6f460504060f7cb 796 Gene3D G3DSA:3.40.50.300 18 286 4.0E-89 T 12-10-2018 Alide_1287 83ef10f3e73774a0c6f460504060f7cb 796 SUPERFAMILY SSF52540 14 691 4.42E-174 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1287 83ef10f3e73774a0c6f460504060f7cb 796 Gene3D G3DSA:1.10.486.10 400 546 7.8E-39 T 12-10-2018 Alide_1287 83ef10f3e73774a0c6f460504060f7cb 796 Gene3D G3DSA:3.40.50.300 295 399 6.8E-35 T 12-10-2018 Alide_1287 83ef10f3e73774a0c6f460504060f7cb 796 Pfam PF13361 UvrD-like helicase C-terminal domain 292 666 7.8E-72 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Alide_1456 d776a002146bff0e17e0c917806a6ba7 152 Pfam PF13411 MerR HTH family regulatory protein 9 75 4.2E-18 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1456 d776a002146bff0e17e0c917806a6ba7 152 Gene3D G3DSA:1.10.1660.10 2 131 2.3E-30 T 12-10-2018 Alide_1456 d776a002146bff0e17e0c917806a6ba7 152 SUPERFAMILY SSF46955 9 122 4.76E-29 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_1456 d776a002146bff0e17e0c917806a6ba7 152 SMART SM00422 8 77 1.6E-23 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1456 d776a002146bff0e17e0c917806a6ba7 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 7.1E-8 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1456 d776a002146bff0e17e0c917806a6ba7 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 7.1E-8 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1456 d776a002146bff0e17e0c917806a6ba7 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 7.1E-8 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1092 d2716c479c19e8862ac166bb2a6c3d0f 96 Gene3D G3DSA:3.30.70.100 1 96 8.1E-34 T 12-10-2018 Alide_1092 d2716c479c19e8862ac166bb2a6c3d0f 96 SUPERFAMILY SSF54909 1 96 1.16E-30 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_1092 d2716c479c19e8862ac166bb2a6c3d0f 96 Pfam PF07045 Domain of unknown function (DUF1330) 3 96 8.7E-37 T 12-10-2018 IPR010753 Domain of unknown function DUF1330 Alide_1008 5fdd440bf39815240a97173428698a9b 447 Pfam PF02785 Biotin carboxylase C-terminal domain 336 442 9.0E-37 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_1008 5fdd440bf39815240a97173428698a9b 447 SUPERFAMILY SSF52440 1 113 4.39E-48 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_1008 5fdd440bf39815240a97173428698a9b 447 Gene3D G3DSA:3.30.1490.20 131 203 9.0E-149 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_1008 5fdd440bf39815240a97173428698a9b 447 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 444 1.5E-207 T 12-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 Alide_1008 5fdd440bf39815240a97173428698a9b 447 Gene3D G3DSA:3.30.470.20 87 433 9.0E-149 T 12-10-2018 Alide_1008 5fdd440bf39815240a97173428698a9b 447 SUPERFAMILY SSF56059 83 345 3.01E-67 T 12-10-2018 Alide_1008 5fdd440bf39815240a97173428698a9b 447 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_1008 5fdd440bf39815240a97173428698a9b 447 SMART SM00878 336 441 1.3E-61 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_1008 5fdd440bf39815240a97173428698a9b 447 Gene3D G3DSA:3.40.50.20 2 85 2.8E-34 T 12-10-2018 Alide_1008 5fdd440bf39815240a97173428698a9b 447 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 9.1E-45 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_1008 5fdd440bf39815240a97173428698a9b 447 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 2.8E-76 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_1008 5fdd440bf39815240a97173428698a9b 447 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_1008 5fdd440bf39815240a97173428698a9b 447 SUPERFAMILY SSF51246 331 443 3.03E-42 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_3666 af9219d9386fdcc28f822384997198ee 298 SUPERFAMILY SSF53335 91 278 1.49E-34 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_3666 af9219d9386fdcc28f822384997198ee 298 PIRSF PIRSF000401 1 298 9.3E-79 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Alide_3666 af9219d9386fdcc28f822384997198ee 298 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 1 298 28.909 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Alide_3666 af9219d9386fdcc28f822384997198ee 298 Gene3D G3DSA:3.40.50.150 106 298 3.6E-55 T 12-10-2018 Alide_3666 af9219d9386fdcc28f822384997198ee 298 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 297 3.9E-76 T 12-10-2018 Alide_3666 af9219d9386fdcc28f822384997198ee 298 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 2 291 2.7E-60 T 12-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 241 254 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 Gene3D G3DSA:3.30.160.270 375 547 7.2E-56 T 12-10-2018 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 SUPERFAMILY SSF51569 20 328 3.11E-98 T 12-10-2018 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 6 549 52.696 T 12-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 Pfam PF00682 HMGL-like 31 311 9.5E-72 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 SUPERFAMILY SSF110921 444 546 1.01E-31 T 12-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 SMART SM00917 420 548 1.7E-35 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 5 547 1.1E-234 T 12-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 38 54 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 Pfam PF08502 LeuA allosteric (dimerisation) domain 420 547 2.2E-28 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 SUPERFAMILY SSF89000 386 434 2.35E-14 T 12-10-2018 Alide_1770 3a7295152851c1c718a2798b46090e8c 555 Gene3D G3DSA:3.20.20.70 10 374 2.5E-150 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1213 27865f8f7dfb2a132d72b28c25dceedd 430 Gene3D G3DSA:3.30.2010.10 207 288 1.4E-29 T 12-10-2018 Alide_1213 27865f8f7dfb2a132d72b28c25dceedd 430 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 30 208 5.8E-57 T 12-10-2018 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 Alide_1213 27865f8f7dfb2a132d72b28c25dceedd 430 Pfam PF01435 Peptidase family M48 213 424 3.5E-33 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Alide_3312 2c25f9eeee6c298ee85c050a64ef29d6 194 PIRSF PIRSF006135 7 194 1.4E-42 T 12-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 Alide_3312 2c25f9eeee6c298ee85c050a64ef29d6 194 Gene3D G3DSA:3.40.50.300 8 192 1.3E-49 T 12-10-2018 Alide_3312 2c25f9eeee6c298ee85c050a64ef29d6 194 SUPERFAMILY SSF52540 9 192 1.27E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3312 2c25f9eeee6c298ee85c050a64ef29d6 194 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 9 189 1.1E-46 T 12-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 Alide_2663 e4a4852c794778e46113d0e6f3b4f5a4 265 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 244 38.542 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD Alide_2663 e4a4852c794778e46113d0e6f3b4f5a4 265 SUPERFAMILY SSF48452 37 111 3.61E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_2663 e4a4852c794778e46113d0e6f3b4f5a4 265 Gene3D G3DSA:1.25.40.10 33 254 7.1E-55 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_2663 e4a4852c794778e46113d0e6f3b4f5a4 265 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 8 249 7.7E-84 T 12-10-2018 IPR017689 Outer membrane protein assembly factor BamD Alide_2663 e4a4852c794778e46113d0e6f3b4f5a4 265 Pfam PF13525 Outer membrane lipoprotein 35 238 4.3E-58 T 12-10-2018 IPR039565 Outer membrane lipoprotein BamD-like Alide_2044 ae1bbc68d86e78c0d9c0a7aa681f4e70 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.0E-15 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2044 ae1bbc68d86e78c0d9c0a7aa681f4e70 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.0E-15 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2044 ae1bbc68d86e78c0d9c0a7aa681f4e70 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.0E-15 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2044 ae1bbc68d86e78c0d9c0a7aa681f4e70 90 Gene3D G3DSA:4.10.520.10 1 90 7.9E-34 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_2044 ae1bbc68d86e78c0d9c0a7aa681f4e70 90 SMART SM00411 1 90 9.0E-39 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2044 ae1bbc68d86e78c0d9c0a7aa681f4e70 90 SUPERFAMILY SSF47729 1 90 1.09E-30 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_2044 ae1bbc68d86e78c0d9c0a7aa681f4e70 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 2.8E-32 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_1510 8f59d0777f7bf088cb2b8c4e291a6b96 450 Pfam PF08245 Mur ligase middle domain 58 236 5.3E-11 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Alide_1510 8f59d0777f7bf088cb2b8c4e291a6b96 450 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 151 166 - T 12-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 Alide_1510 8f59d0777f7bf088cb2b8c4e291a6b96 450 TIGRFAM TIGR01499 folC: bifunctional protein FolC 41 437 2.9E-102 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Alide_1510 8f59d0777f7bf088cb2b8c4e291a6b96 450 Gene3D G3DSA:3.40.1190.10 8 300 1.5E-85 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_1510 8f59d0777f7bf088cb2b8c4e291a6b96 450 SUPERFAMILY SSF53244 299 437 2.2E-30 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_1510 8f59d0777f7bf088cb2b8c4e291a6b96 450 PIRSF PIRSF001563 13 440 3.3E-104 T 12-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Alide_1510 8f59d0777f7bf088cb2b8c4e291a6b96 450 Pfam PF02875 Mur ligase family, glutamate ligase domain 300 364 5.1E-6 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Alide_1510 8f59d0777f7bf088cb2b8c4e291a6b96 450 SUPERFAMILY SSF53623 17 297 2.98E-81 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_1510 8f59d0777f7bf088cb2b8c4e291a6b96 450 Gene3D G3DSA:3.90.190.20 301 439 1.3E-32 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 232 246 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 Pfam PF01479 S4 domain 133 176 1.7E-9 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 198 358 1.3E-50 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 SUPERFAMILY SSF55174 133 219 1.31E-16 T 12-10-2018 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 Pfam PF00849 RNA pseudouridylate synthase 194 327 1.1E-14 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 SUPERFAMILY SSF55120 193 362 5.52E-41 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 Gene3D G3DSA:3.10.290.10 126 186 6.9E-18 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 Gene3D G3DSA:3.30.70.1560 256 346 1.2E-47 T 12-10-2018 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 SMART SM00363 131 188 7.8E-8 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3042 4f42768609d3210b2e2f3f542101f402 451 Gene3D G3DSA:3.30.70.580 196 354 1.2E-47 T 12-10-2018 Alide_0695 614205e6b2fc4f40c5dc0ce0e9cb1b1b 250 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 33 132 1.1E-17 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_0695 614205e6b2fc4f40c5dc0ce0e9cb1b1b 250 Gene3D G3DSA:1.10.3720.10 27 239 2.8E-42 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0695 614205e6b2fc4f40c5dc0ce0e9cb1b1b 250 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 56 238 1.6E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0695 614205e6b2fc4f40c5dc0ce0e9cb1b1b 250 SUPERFAMILY SSF161098 33 226 5.23E-38 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2983 2c1dbd443405da383b7840427211c545 153 Pfam PF01575 MaoC like domain 11 125 1.0E-18 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_2983 2c1dbd443405da383b7840427211c545 153 Gene3D G3DSA:3.10.129.10 1 149 7.2E-49 T 12-10-2018 Alide_2983 2c1dbd443405da383b7840427211c545 153 SUPERFAMILY SSF54637 1 149 6.94E-43 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2398 07c3a4310d76105ad36631fd53613107 167 SUPERFAMILY SSF54637 5 156 1.31E-45 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2398 07c3a4310d76105ad36631fd53613107 167 Gene3D G3DSA:3.10.129.10 1 153 2.9E-55 T 12-10-2018 Alide_2398 07c3a4310d76105ad36631fd53613107 167 Pfam PF03061 Thioesterase superfamily 23 96 4.5E-19 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_0584 7682428de6be77673c6058d8b0754c44 357 SUPERFAMILY SSF52540 38 268 2.21E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0584 7682428de6be77673c6058d8b0754c44 357 Gene3D G3DSA:1.10.8.60 200 273 1.1E-30 T 12-10-2018 Alide_0584 7682428de6be77673c6058d8b0754c44 357 SUPERFAMILY SSF46785 275 348 8.71E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0584 7682428de6be77673c6058d8b0754c44 357 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 42 344 2.7E-144 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Alide_0584 7682428de6be77673c6058d8b0754c44 357 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 268 346 3.0E-37 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Alide_0584 7682428de6be77673c6058d8b0754c44 357 Gene3D G3DSA:3.40.50.300 38 199 7.5E-39 T 12-10-2018 Alide_0584 7682428de6be77673c6058d8b0754c44 357 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 357 180.56 T 12-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Alide_0584 7682428de6be77673c6058d8b0754c44 357 Gene3D G3DSA:1.10.10.10 275 352 1.1E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0584 7682428de6be77673c6058d8b0754c44 357 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 271 344 8.7E-33 T 12-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Alide_0584 7682428de6be77673c6058d8b0754c44 357 SMART SM00382 69 196 3.9E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0584 7682428de6be77673c6058d8b0754c44 357 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 27 253 3.7E-116 T 12-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Alide_0658 ca0a0f01615557623f53e19269884d9d 767 Gene3D G3DSA:3.30.1370.120 157 217 1.1E-6 T 12-10-2018 IPR038591 NolW-like superfamily Alide_0658 ca0a0f01615557623f53e19269884d9d 767 Pfam PF03958 Bacterial type II/III secretion system short domain 226 338 6.4E-8 T 12-10-2018 IPR005644 NolW-like Alide_0658 ca0a0f01615557623f53e19269884d9d 767 Pfam PF03958 Bacterial type II/III secretion system short domain 346 489 4.2E-13 T 12-10-2018 IPR005644 NolW-like Alide_0658 ca0a0f01615557623f53e19269884d9d 767 Pfam PF00263 Bacterial type II and III secretion system protein 559 720 8.7E-45 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 Alide_0658 ca0a0f01615557623f53e19269884d9d 767 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 62 728 2.7E-118 T 12-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 Alide_0658 ca0a0f01615557623f53e19269884d9d 767 PRINTS PR00811 Bacterial general secretion pathway protein D signature 555 579 9.6E-18 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0658 ca0a0f01615557623f53e19269884d9d 767 PRINTS PR00811 Bacterial general secretion pathway protein D signature 685 703 9.6E-18 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0658 ca0a0f01615557623f53e19269884d9d 767 PRINTS PR00811 Bacterial general secretion pathway protein D signature 708 722 9.6E-18 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0658 ca0a0f01615557623f53e19269884d9d 767 PRINTS PR00811 Bacterial general secretion pathway protein D signature 489 499 9.6E-18 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0658 ca0a0f01615557623f53e19269884d9d 767 Gene3D G3DSA:3.55.50.30 53 150 3.9E-12 T 12-10-2018 Alide_3745 6db005a7d14c8c24dc9f070e9e06d2c2 280 SUPERFAMILY SSF51556 10 279 1.01E-64 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_3745 6db005a7d14c8c24dc9f070e9e06d2c2 280 Gene3D G3DSA:3.20.20.140 1 280 1.9E-72 T 12-10-2018 Alide_3745 6db005a7d14c8c24dc9f070e9e06d2c2 280 Pfam PF04909 Amidohydrolase 15 279 4.6E-33 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_4201 afb91154a2528a54a7da962710c23016 223 SUPERFAMILY SSF110997 112 182 1.22E-5 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Alide_3753 2995be97dfa782bca6c29dae186c63f9 249 SMART SM00893 23 211 1.2E-68 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_3753 2995be97dfa782bca6c29dae186c63f9 249 PIRSF PIRSF000090 1 249 2.2E-87 T 12-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Alide_3753 2995be97dfa782bca6c29dae186c63f9 249 SUPERFAMILY SSF52402 1 242 3.49E-87 T 12-10-2018 Alide_3753 2995be97dfa782bca6c29dae186c63f9 249 Gene3D G3DSA:3.40.50.620 1 247 1.1E-88 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3753 2995be97dfa782bca6c29dae186c63f9 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 12-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Alide_3753 2995be97dfa782bca6c29dae186c63f9 249 Pfam PF01012 Electron transfer flavoprotein domain 28 206 7.0E-47 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_2929 2995be97dfa782bca6c29dae186c63f9 249 SMART SM00893 23 211 1.2E-68 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_2929 2995be97dfa782bca6c29dae186c63f9 249 PIRSF PIRSF000090 1 249 2.2E-87 T 12-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Alide_2929 2995be97dfa782bca6c29dae186c63f9 249 SUPERFAMILY SSF52402 1 242 3.49E-87 T 12-10-2018 Alide_2929 2995be97dfa782bca6c29dae186c63f9 249 Gene3D G3DSA:3.40.50.620 1 247 1.1E-88 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2929 2995be97dfa782bca6c29dae186c63f9 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 12-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Alide_2929 2995be97dfa782bca6c29dae186c63f9 249 Pfam PF01012 Electron transfer flavoprotein domain 28 206 7.0E-47 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 SUPERFAMILY SSF51735 292 472 3.29E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 Gene3D G3DSA:3.40.50.720 294 476 1.9E-66 T 12-10-2018 Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 Gene3D G3DSA:3.90.226.10 4 293 1.5E-89 T 12-10-2018 Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 196 5.4E-40 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 296 472 3.1E-64 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 SUPERFAMILY SSF48179 475 578 4.85E-25 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 SUPERFAMILY SSF52096 5 285 1.32E-66 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 SUPERFAMILY SSF48179 602 692 9.35E-23 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 Gene3D G3DSA:1.10.1040.50 478 697 9.5E-79 T 12-10-2018 Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 605 698 1.5E-8 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_3290 0ff5aefc4c42c57bb8f9abe96d85615a 702 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 476 569 8.6E-25 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_4116 6ee3d7742e51f9afc567b677f9af5aef 160 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 63 154 2.1E-12 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_4116 6ee3d7742e51f9afc567b677f9af5aef 160 Gene3D G3DSA:1.10.760.10 52 160 2.8E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_4116 6ee3d7742e51f9afc567b677f9af5aef 160 SUPERFAMILY SSF46626 15 155 2.18E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_4116 6ee3d7742e51f9afc567b677f9af5aef 160 TIGRFAM TIGR04494 c550_PedF: cytochrome c-550 PedF 16 158 9.0E-58 T 12-10-2018 IPR030991 Cytochrome c-550 PedF Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 Gene3D G3DSA:3.40.50.620 10 218 4.7E-70 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 Gene3D G3DSA:1.10.579.10 302 486 1.8E-76 T 12-10-2018 Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 PRINTS PR00147 DNA photolyase signature 153 169 5.0E-29 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 PRINTS PR00147 DNA photolyase signature 333 349 5.0E-29 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 PRINTS PR00147 DNA photolyase signature 353 371 5.0E-29 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 PRINTS PR00147 DNA photolyase signature 392 406 5.0E-29 T 12-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 353 372 - T 12-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 Pfam PF03441 FAD binding domain of DNA photolyase 284 482 5.4E-82 T 12-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 SUPERFAMILY SSF48173 208 483 1.19E-102 T 12-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 333 345 - T 12-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 Gene3D G3DSA:1.25.40.80 142 298 4.7E-70 T 12-10-2018 Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 SUPERFAMILY SSF52425 9 188 1.96E-48 T 12-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 Alide_1894 043e3039ec843c7ae7c538e29bb51701 491 Pfam PF00875 DNA photolyase 9 178 9.7E-48 T 12-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 334 342 - T 12-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 SUPERFAMILY SSF56634 3 482 5.76E-218 T 12-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 ProSitePatterns PS00438 Catalase proximal active site signature. 44 60 - T 12-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 Gene3D G3DSA:2.40.180.10 3 485 1.6E-232 T 12-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 SMART SM01060 8 392 4.1E-291 T 12-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 PRINTS PR00067 Catalase signature 84 102 4.4E-74 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 PRINTS PR00067 Catalase signature 124 142 4.4E-74 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 PRINTS PR00067 Catalase signature 21 44 4.4E-74 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 PRINTS PR00067 Catalase signature 321 347 4.4E-74 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 PRINTS PR00067 Catalase signature 105 122 4.4E-74 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 PRINTS PR00067 Catalase signature 289 316 4.4E-74 T 12-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 Pfam PF06628 Catalase-related immune-responsive 416 476 4.1E-21 T 12-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 Pfam PF00199 Catalase 8 389 2.7E-190 T 12-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_2804 432cb0b7cb80b97e60cdb5a7dfad9e45 485 PIRSF PIRSF038928 1 481 1.6E-222 T 12-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 Alide_1446 801a6bda4092ca6b095e6eba1c6b924d 616 Gene3D G3DSA:3.40.630.10 129 416 4.0E-31 T 12-10-2018 Alide_1446 801a6bda4092ca6b095e6eba1c6b924d 616 SMART SM00631 134 341 5.8E-4 T 12-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Alide_1446 801a6bda4092ca6b095e6eba1c6b924d 616 SUPERFAMILY SSF53187 134 396 2.05E-39 T 12-10-2018 Alide_1446 801a6bda4092ca6b095e6eba1c6b924d 616 Pfam PF00246 Zinc carboxypeptidase 141 291 1.4E-15 T 12-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Alide_0957 0d44230df69d47a1bed0d1f64292b1be 483 Gene3D G3DSA:1.20.1730.10 17 480 5.6E-77 T 12-10-2018 IPR038377 Sodium/glucose symporter superfamily Alide_0957 0d44230df69d47a1bed0d1f64292b1be 483 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 410 430 - T 12-10-2018 IPR018212 Sodium/solute symporter, conserved site Alide_0957 0d44230df69d47a1bed0d1f64292b1be 483 Pfam PF00474 Sodium:solute symporter family 30 428 3.5E-42 T 12-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Alide_3470 8a3cd14412a6b610a497e1cd41ea2a89 349 Gene3D G3DSA:2.40.30.170 36 262 2.5E-38 T 12-10-2018 Alide_3470 8a3cd14412a6b610a497e1cd41ea2a89 349 SUPERFAMILY SSF111369 48 244 5.36E-13 T 12-10-2018 Alide_3470 8a3cd14412a6b610a497e1cd41ea2a89 349 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 244 2.4E-15 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_3470 8a3cd14412a6b610a497e1cd41ea2a89 349 Gene3D G3DSA:1.10.287.470 82 153 2.5E-38 T 12-10-2018 Alide_3470 8a3cd14412a6b610a497e1cd41ea2a89 349 Gene3D G3DSA:2.40.420.20 263 311 2.5E-38 T 12-10-2018 Alide_3470 8a3cd14412a6b610a497e1cd41ea2a89 349 Gene3D G3DSA:2.40.50.100 48 188 2.5E-38 T 12-10-2018 Alide_3470 8a3cd14412a6b610a497e1cd41ea2a89 349 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 343 1.0E-32 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_3872 8510a711ac22b87a4096d2342ce749b8 520 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 384 6.6E-73 T 12-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 Alide_3872 8510a711ac22b87a4096d2342ce749b8 520 Gene3D G3DSA:1.20.120.1380 265 477 2.4E-41 T 12-10-2018 Alide_3872 8510a711ac22b87a4096d2342ce749b8 520 SMART SM00962 296 486 6.6E-28 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3872 8510a711ac22b87a4096d2342ce749b8 520 Pfam PF00448 SRP54-type protein, GTPase domain 298 483 5.0E-25 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3872 8510a711ac22b87a4096d2342ce749b8 520 SUPERFAMILY SSF52540 291 483 1.53E-25 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3872 8510a711ac22b87a4096d2342ce749b8 520 Gene3D G3DSA:3.40.50.300 291 474 2.4E-41 T 12-10-2018 Alide_3872 8510a711ac22b87a4096d2342ce749b8 520 SMART SM00382 295 463 6.3E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4242 76da04b3c734c1012dad766ab8bb3563 1356 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 26 1338 3.1E-213 T 12-10-2018 IPR011836 Conserved hypothetical protein CHP02099 Alide_4242 76da04b3c734c1012dad766ab8bb3563 1356 Pfam PF13502 AsmA-like C-terminal region 1080 1332 9.6E-68 T 12-10-2018 IPR032712 AsmA-like, C-terminal Alide_4242 76da04b3c734c1012dad766ab8bb3563 1356 Pfam PF13116 Protein of unknown function 541 828 6.8E-46 T 12-10-2018 IPR025263 Domain of unknown function DUF3971 Alide_2490 e01d3857860680b5c4faa6cda7421a8d 346 Gene3D G3DSA:3.40.190.10 29 324 5.3E-125 T 12-10-2018 Alide_2490 e01d3857860680b5c4faa6cda7421a8d 346 Pfam PF12849 PBP superfamily domain 24 306 1.1E-64 T 12-10-2018 IPR024370 PBP domain Alide_2490 e01d3857860680b5c4faa6cda7421a8d 346 PIRSF PIRSF002756 3 338 2.0E-108 T 12-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 Alide_2490 e01d3857860680b5c4faa6cda7421a8d 346 Gene3D G3DSA:3.40.190.10 102 277 5.3E-125 T 12-10-2018 Alide_2490 e01d3857860680b5c4faa6cda7421a8d 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 6.3E-128 T 12-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 Alide_2490 e01d3857860680b5c4faa6cda7421a8d 346 SUPERFAMILY SSF53850 29 336 3.67E-100 T 12-10-2018 Alide_0812 eeb195181dad34706a9fea11ace66b51 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 297 1.5E-19 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_0812 eeb195181dad34706a9fea11ace66b51 324 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0812 eeb195181dad34706a9fea11ace66b51 324 Gene3D G3DSA:3.40.50.300 1 323 1.1E-103 T 12-10-2018 Alide_0812 eeb195181dad34706a9fea11ace66b51 324 SMART SM00382 32 239 5.6E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0812 eeb195181dad34706a9fea11ace66b51 324 Pfam PF00005 ABC transporter 23 181 1.6E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0812 eeb195181dad34706a9fea11ace66b51 324 SUPERFAMILY SSF52540 3 252 4.53E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0812 eeb195181dad34706a9fea11ace66b51 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 315 1.3E-24 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 7.0E-47 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 PRINTS PR00985 Leucyl-tRNA synthetase signature 505 523 7.0E-47 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 PRINTS PR00985 Leucyl-tRNA synthetase signature 221 240 7.0E-47 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 PRINTS PR00985 Leucyl-tRNA synthetase signature 543 565 7.0E-47 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 7.0E-47 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 PRINTS PR00985 Leucyl-tRNA synthetase signature 576 586 7.0E-47 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Pfam PF08264 Anticodon-binding domain of tRNA 738 863 1.2E-13 T 12-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 227 419 2.3E-63 T 12-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Gene3D G3DSA:3.10.330.110 586 658 0.0 T 12-10-2018 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 SUPERFAMILY SSF52374 4 696 5.63E-138 T 12-10-2018 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Gene3D G3DSA:1.10.730.10 8 833 0.0 T 12-10-2018 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 901 0.0 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 SUPERFAMILY SSF47323 693 900 3.92E-29 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Pfam PF09334 tRNA synthetases class I (M) 38 171 1.3E-17 T 12-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 SUPERFAMILY SSF50677 253 429 9.84E-49 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 435 615 2.2E-8 T 12-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Gene3D G3DSA:3.90.740.10 233 431 0.0 T 12-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Gene3D G3DSA:3.40.50.620 33 585 0.0 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Gene3D G3DSA:3.10.20.590 843 901 3.5E-17 T 12-10-2018 Alide_4111 0540877b2de97fc007b535ed21a4e0d3 901 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 901 22.231 T 12-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Alide_4359 34d225cc4eafab81f30980250de9cc4e 345 SUPERFAMILY SSF117892 90 231 3.53E-8 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily Alide_4359 34d225cc4eafab81f30980250de9cc4e 345 Pfam PF13421 SPFH domain-Band 7 family 26 235 8.2E-77 T 12-10-2018 IPR033880 SPFH domain, YdjI-like Alide_4359 34d225cc4eafab81f30980250de9cc4e 345 Pfam PF09851 Short C-terminal domain 315 341 4.4E-9 T 12-10-2018 IPR018649 SHOCT domain Alide_2835 5ebf9322c35d29621d0444df5eb6a16a 350 TIGRFAM TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB 19 319 1.3E-118 T 12-10-2018 IPR014149 Conjugative transfer, TrbB GO:0000746|GO:0005737 Alide_2835 5ebf9322c35d29621d0444df5eb6a16a 350 SUPERFAMILY SSF52540 14 287 3.23E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2835 5ebf9322c35d29621d0444df5eb6a16a 350 Pfam PF00437 Type II/IV secretion system protein 31 298 7.0E-77 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_2835 5ebf9322c35d29621d0444df5eb6a16a 350 Gene3D G3DSA:3.30.450.90 24 127 1.6E-14 T 12-10-2018 Alide_2835 5ebf9322c35d29621d0444df5eb6a16a 350 Gene3D G3DSA:3.40.50.300 129 327 2.1E-51 T 12-10-2018 Alide_3450 33925b7036890c196cd8615a4a21ca78 476 Pfam PF05193 Peptidase M16 inactive domain 202 388 6.7E-26 T 12-10-2018 IPR007863 Peptidase M16, C-terminal Alide_3450 33925b7036890c196cd8615a4a21ca78 476 SUPERFAMILY SSF63411 36 248 1.05E-60 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Alide_3450 33925b7036890c196cd8615a4a21ca78 476 Gene3D G3DSA:3.30.830.10 256 457 3.3E-48 T 12-10-2018 Alide_3450 33925b7036890c196cd8615a4a21ca78 476 SUPERFAMILY SSF63411 264 456 9.17E-31 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Alide_3450 33925b7036890c196cd8615a4a21ca78 476 Gene3D G3DSA:3.30.830.10 32 254 6.0E-80 T 12-10-2018 Alide_3450 33925b7036890c196cd8615a4a21ca78 476 Pfam PF00675 Insulinase (Peptidase family M16) 53 192 1.4E-26 T 12-10-2018 IPR011765 Peptidase M16, N-terminal Alide_1346 cc46161791fc55c6765b5529726d74d6 400 Pfam PF13458 Periplasmic binding protein 29 364 3.8E-86 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_1346 cc46161791fc55c6765b5529726d74d6 400 Gene3D G3DSA:3.40.50.2300 30 331 2.6E-113 T 12-10-2018 Alide_1346 cc46161791fc55c6765b5529726d74d6 400 SUPERFAMILY SSF53822 30 399 7.07E-92 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_1346 cc46161791fc55c6765b5529726d74d6 400 Gene3D G3DSA:3.40.50.2300 149 280 2.6E-113 T 12-10-2018 Alide_0649 d1a8c13660f61bd723a65e4b78a1f58c 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 384 403 5.0E-20 T 12-10-2018 IPR003004 GspF/PilC family Alide_0649 d1a8c13660f61bd723a65e4b78a1f58c 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 66 78 5.0E-20 T 12-10-2018 IPR003004 GspF/PilC family Alide_0649 d1a8c13660f61bd723a65e4b78a1f58c 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 368 382 5.0E-20 T 12-10-2018 IPR003004 GspF/PilC family Alide_0649 d1a8c13660f61bd723a65e4b78a1f58c 403 PRINTS PR00812 Bacterial general secretion pathway protein F signature 165 193 5.0E-20 T 12-10-2018 IPR003004 GspF/PilC family Alide_0649 d1a8c13660f61bd723a65e4b78a1f58c 403 Gene3D G3DSA:1.20.81.30 257 366 7.3E-19 T 12-10-2018 Alide_0649 d1a8c13660f61bd723a65e4b78a1f58c 403 Pfam PF00482 Type II secretion system (T2SS), protein F 70 193 9.1E-22 T 12-10-2018 IPR018076 Type II secretion system F domain Alide_0649 d1a8c13660f61bd723a65e4b78a1f58c 403 Pfam PF00482 Type II secretion system (T2SS), protein F 274 393 5.7E-20 T 12-10-2018 IPR018076 Type II secretion system F domain Alide_0649 d1a8c13660f61bd723a65e4b78a1f58c 403 Gene3D G3DSA:1.20.81.30 59 171 4.3E-21 T 12-10-2018 Alide_2243 69108d6b1ba60d0b0f386408599cdaed 184 SUPERFAMILY SSF54001 44 168 1.99E-43 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Alide_2243 69108d6b1ba60d0b0f386408599cdaed 184 Gene3D G3DSA:3.90.1720.10 43 177 2.0E-43 T 12-10-2018 Alide_2243 69108d6b1ba60d0b0f386408599cdaed 184 Pfam PF00877 NlpC/P60 family 59 166 1.0E-29 T 12-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain Alide_3279 895e1bb7b584083f5ae3277af2c105e7 249 SUPERFAMILY SSF52402 1 242 2.23E-86 T 12-10-2018 Alide_3279 895e1bb7b584083f5ae3277af2c105e7 249 Gene3D G3DSA:3.40.50.620 1 247 3.3E-87 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3279 895e1bb7b584083f5ae3277af2c105e7 249 SMART SM00893 23 211 1.0E-68 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_3279 895e1bb7b584083f5ae3277af2c105e7 249 Pfam PF01012 Electron transfer flavoprotein domain 28 206 6.4E-47 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_3279 895e1bb7b584083f5ae3277af2c105e7 249 PIRSF PIRSF000090 1 249 9.3E-86 T 12-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Alide_3279 895e1bb7b584083f5ae3277af2c105e7 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 12-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 57 603 7.2E-195 T 12-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 SUPERFAMILY SSF50715 379 600 2.25E-58 T 12-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 6 601 49.334 T 12-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 SUPERFAMILY SSF52374 56 384 3.38E-94 T 12-10-2018 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 63 74 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 Gene3D G3DSA:1.10.1160.10 300 378 1.1E-32 T 12-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 Gene3D G3DSA:3.90.800.10 135 243 1.2E-97 T 12-10-2018 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 Gene3D G3DSA:2.40.240.10 387 516 1.2E-65 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 PRINTS PR00987 Glutamyl-tRNA synthetase signature 244 254 1.0E-10 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 PRINTS PR00987 Glutamyl-tRNA synthetase signature 74 85 1.0E-10 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 PRINTS PR00987 Glutamyl-tRNA synthetase signature 89 102 1.0E-10 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 72 1.0E-10 T 12-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 379 580 8.5E-43 T 12-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 Gene3D G3DSA:3.40.50.620 58 282 1.2E-97 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 56 375 7.2E-101 T 12-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Alide_2030 b0306e49342aeb0ba79b565a702201f8 603 Gene3D G3DSA:2.40.240.10 379 598 1.2E-65 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_3331 3c9606f31a5b2c95257077c751c23c24 147 Pfam PF00582 Universal stress protein family 1 147 9.1E-32 T 12-10-2018 IPR006016 UspA Alide_3331 3c9606f31a5b2c95257077c751c23c24 147 Gene3D G3DSA:3.40.50.620 1 147 2.2E-37 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3331 3c9606f31a5b2c95257077c751c23c24 147 SUPERFAMILY SSF52402 2 147 1.17E-36 T 12-10-2018 Alide_3331 3c9606f31a5b2c95257077c751c23c24 147 PIRSF PIRSF006276 1 147 5.9E-18 T 12-10-2018 IPR006015 Universal stress protein A Alide_3331 3c9606f31a5b2c95257077c751c23c24 147 PRINTS PR01438 Universal stress protein signature 107 119 1.5E-19 T 12-10-2018 IPR006015 Universal stress protein A Alide_3331 3c9606f31a5b2c95257077c751c23c24 147 PRINTS PR01438 Universal stress protein signature 125 147 1.5E-19 T 12-10-2018 IPR006015 Universal stress protein A Alide_3331 3c9606f31a5b2c95257077c751c23c24 147 PRINTS PR01438 Universal stress protein signature 2 20 1.5E-19 T 12-10-2018 IPR006015 Universal stress protein A Alide_2995 9a7bd423caa734865ec35fbbaf15798d 430 TIGRFAM TIGR03467 HpnE: squalene-associated FAD-dependent desaturase 3 430 2.7E-89 T 12-10-2018 IPR017830 Hydroxysqualene dehydroxylase HpnE MetaCyc: PWY-7072 Alide_2995 9a7bd423caa734865ec35fbbaf15798d 430 Pfam PF01593 Flavin containing amine oxidoreductase 12 430 3.9E-18 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Alide_2995 9a7bd423caa734865ec35fbbaf15798d 430 SUPERFAMILY SSF51905 1 430 1.25E-38 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2995 9a7bd423caa734865ec35fbbaf15798d 430 Gene3D G3DSA:3.50.50.60 217 427 7.1E-7 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2995 9a7bd423caa734865ec35fbbaf15798d 430 Gene3D G3DSA:3.90.660.10 213 390 7.1E-7 T 12-10-2018 Alide_2995 9a7bd423caa734865ec35fbbaf15798d 430 Gene3D G3DSA:3.50.50.60 1 84 7.8E-13 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0499 3925d84595c58e70a379a0acd8edf951 298 SUPERFAMILY SSF46785 13 90 8.01E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0499 3925d84595c58e70a379a0acd8edf951 298 Gene3D G3DSA:3.40.190.10 169 266 5.0E-47 T 12-10-2018 Alide_0499 3925d84595c58e70a379a0acd8edf951 298 Gene3D G3DSA:3.40.190.10 109 293 5.0E-47 T 12-10-2018 Alide_0499 3925d84595c58e70a379a0acd8edf951 298 SUPERFAMILY SSF53850 99 297 2.17E-38 T 12-10-2018 Alide_0499 3925d84595c58e70a379a0acd8edf951 298 Pfam PF03466 LysR substrate binding domain 99 297 2.5E-35 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0499 3925d84595c58e70a379a0acd8edf951 298 Gene3D G3DSA:1.10.10.10 16 103 4.4E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0499 3925d84595c58e70a379a0acd8edf951 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 73 4.3E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 Pfam PF00512 His Kinase A (phospho-acceptor) domain 134 193 4.6E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 SMART SM00388 132 197 7.8E-17 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 303 3.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 354 3.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 PRINTS PR00344 Bacterial sensor protein C-terminal signature 318 336 3.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 PRINTS PR00344 Bacterial sensor protein C-terminal signature 307 317 3.2E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 SUPERFAMILY SSF55874 201 354 2.75E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 Gene3D G3DSA:3.30.450.20 8 111 2.0E-6 T 12-10-2018 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 Gene3D G3DSA:3.30.565.10 196 355 4.3E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 SUPERFAMILY SSF55785 12 99 4.51E-7 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 SUPERFAMILY SSF47384 118 194 3.53E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 237 355 1.1E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 Gene3D G3DSA:1.10.287.130 118 194 7.2E-14 T 12-10-2018 Alide_3016 d0142543a98b2ef49b2fd67cb20309fb 356 SMART SM00387 237 356 2.8E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1544 d77b444c5f5f099c4bdba13407b2f94b 93 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 35 86 9.5E-19 T 12-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Alide_1544 d77b444c5f5f099c4bdba13407b2f94b 93 PIRSF PIRSF028784 2 93 1.3E-27 T 12-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Alide_2281 2ffd8beaaafee2d8aa93b8997860ed91 611 Pfam PF00501 AMP-binding enzyme 24 480 6.4E-92 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_2281 2ffd8beaaafee2d8aa93b8997860ed91 611 Gene3D G3DSA:3.30.300.30 477 608 4.6E-6 T 12-10-2018 Alide_2281 2ffd8beaaafee2d8aa93b8997860ed91 611 Gene3D G3DSA:3.40.50.12780 3 307 1.5E-53 T 12-10-2018 Alide_2281 2ffd8beaaafee2d8aa93b8997860ed91 611 PRINTS PR00154 AMP-binding signature 187 198 3.1E-5 T 12-10-2018 IPR020459 AMP-binding Alide_2281 2ffd8beaaafee2d8aa93b8997860ed91 611 PRINTS PR00154 AMP-binding signature 199 207 3.1E-5 T 12-10-2018 IPR020459 AMP-binding Alide_2281 2ffd8beaaafee2d8aa93b8997860ed91 611 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_2281 2ffd8beaaafee2d8aa93b8997860ed91 611 Gene3D G3DSA:3.40.50.12780 308 476 3.2E-36 T 12-10-2018 Alide_2281 2ffd8beaaafee2d8aa93b8997860ed91 611 SUPERFAMILY SSF56801 14 609 5.89E-118 T 12-10-2018 Alide_3662 cb94b0dd541d62a03493e5e87bd7e2fa 396 SUPERFAMILY SSF47240 60 367 1.54E-96 T 12-10-2018 IPR009078 Ferritin-like superfamily Alide_3662 cb94b0dd541d62a03493e5e87bd7e2fa 396 Pfam PF00268 Ribonucleotide reductase, small chain 76 363 7.8E-84 T 12-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3662 cb94b0dd541d62a03493e5e87bd7e2fa 396 PIRSF PIRSF000355 47 396 2.2E-133 T 12-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3662 cb94b0dd541d62a03493e5e87bd7e2fa 396 Gene3D G3DSA:1.10.620.20 51 389 4.3E-112 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 SUPERFAMILY SSF47203 231 386 2.26E-43 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 Gene3D G3DSA:1.10.540.10 1 118 5.0E-31 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 220 4.0E-22 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 Gene3D G3DSA:1.20.140.10 238 382 1.9E-35 T 12-10-2018 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 PIRSF PIRSF016578 128 197 1.1E-4 T 12-10-2018 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 PIRSF PIRSF016578 1 112 1.3E-6 T 12-10-2018 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 PIRSF PIRSF016578 238 386 5.6E-5 T 12-10-2018 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 117 2.3E-26 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 366 6.9E-34 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 340 359 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 SUPERFAMILY SSF56645 6 245 2.36E-61 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0162 2da623cf48386cb2f3140f07f581d4ba 388 Gene3D G3DSA:2.40.110.10 122 237 6.0E-33 T 12-10-2018 Alide_3069 cb8409f798621d1dbdfcec7f17e619f1 412 Pfam PF07690 Major Facilitator Superfamily 25 282 5.7E-22 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_3069 cb8409f798621d1dbdfcec7f17e619f1 412 Gene3D G3DSA:1.20.1250.20 13 408 2.2E-38 T 12-10-2018 Alide_3069 cb8409f798621d1dbdfcec7f17e619f1 412 SUPERFAMILY SSF103473 10 406 2.49E-50 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_3032 1fbcbbea431b2ef3cd0c0a7525852b56 100 SUPERFAMILY SSF50182 26 88 1.42E-23 T 12-10-2018 IPR010920 LSM domain superfamily Alide_3032 1fbcbbea431b2ef3cd0c0a7525852b56 100 Gene3D G3DSA:2.30.30.100 19 96 1.0E-32 T 12-10-2018 Alide_3032 1fbcbbea431b2ef3cd0c0a7525852b56 100 Pfam PF17209 Hfq protein 26 87 1.2E-30 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Alide_3032 1fbcbbea431b2ef3cd0c0a7525852b56 100 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 26 83 3.3E-28 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Alide_3032 1fbcbbea431b2ef3cd0c0a7525852b56 100 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 22 83 27.549 T 12-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Alide_0308 164db5cb0e0c2af41f4c781c7cc480a4 164 Gene3D G3DSA:3.30.530.20 16 163 6.1E-35 T 12-10-2018 IPR023393 START-like domain superfamily Alide_0308 164db5cb0e0c2af41f4c781c7cc480a4 164 SUPERFAMILY SSF55961 5 161 1.93E-34 T 12-10-2018 Alide_0308 164db5cb0e0c2af41f4c781c7cc480a4 164 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 28 140 2.4E-14 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like Alide_0981 962ed7630f7e44be8ed403df8fab2725 208 Pfam PF01386 Ribosomal L25p family 5 90 1.8E-24 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Alide_0981 962ed7630f7e44be8ed403df8fab2725 208 Gene3D G3DSA:2.170.120.20 95 193 1.9E-17 T 12-10-2018 IPR037121 Ribosomal protein L25, C-terminal Alide_0981 962ed7630f7e44be8ed403df8fab2725 208 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 99 186 6.2E-19 T 12-10-2018 IPR020057 Ribosomal protein L25, beta domain Alide_0981 962ed7630f7e44be8ed403df8fab2725 208 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 1 93 21.544 T 12-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Alide_0981 962ed7630f7e44be8ed403df8fab2725 208 Gene3D G3DSA:2.40.240.10 1 93 4.1E-31 T 12-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_0981 962ed7630f7e44be8ed403df8fab2725 208 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 5 171 2.7E-37 T 12-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Alide_0981 962ed7630f7e44be8ed403df8fab2725 208 SUPERFAMILY SSF50715 2 191 7.06E-49 T 12-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Alide_0981 962ed7630f7e44be8ed403df8fab2725 208 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 1 184 27.489 T 12-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Alide_0981 962ed7630f7e44be8ed403df8fab2725 208 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 1 93 2.0E-41 T 12-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Gene3D G3DSA:1.10.601.10 307 636 1.6E-121 T 12-10-2018 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 591 604 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 PRINTS PR00046 Major sigma-70 factor signature 739 751 1.0E-30 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 PRINTS PR00046 Major sigma-70 factor signature 591 604 1.0E-30 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 PRINTS PR00046 Major sigma-70 factor signature 615 623 1.0E-30 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 PRINTS PR00046 Major sigma-70 factor signature 760 775 1.0E-30 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 PRINTS PR00046 Major sigma-70 factor signature 775 786 1.0E-30 T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 563 799 6.5E-118 T 12-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 760 786 - T 12-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Pfam PF03979 Sigma-70 factor, region 1.1 196 275 9.4E-23 T 12-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Gene3D G3DSA:1.10.220.120 194 256 1.4E-21 T 12-10-2018 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Pfam PF04542 Sigma-70 region 2 567 636 2.5E-21 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Gene3D G3DSA:1.10.10.10 640 715 1.5E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1331 6ee89bf81063082c0f323dd77589d936 802 SUPERFAMILY SSF88946 309 634 9.73E-108 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Pfam PF04545 Sigma-70, region 4 736 788 2.3E-18 T 12-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 SUPERFAMILY SSF88659 640 713 9.16E-17 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_1331 6ee89bf81063082c0f323dd77589d936 802 SUPERFAMILY SSF88659 697 799 5.23E-27 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Gene3D G3DSA:1.10.10.10 717 801 9.0E-35 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 196 800 41.889 T 12-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 563 788 1.9E-40 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Pfam PF04539 Sigma-70 region 3 646 721 1.6E-22 T 12-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Pfam PF04546 Sigma-70, non-essential region 334 536 3.5E-62 T 12-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_1331 6ee89bf81063082c0f323dd77589d936 802 Pfam PF00140 Sigma-70 factor, region 1.2 292 323 2.4E-12 T 12-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 Pfam PF00005 ABC transporter 22 190 2.0E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 Pfam PF12848 ABC transporter 229 305 1.7E-11 T 12-10-2018 IPR032781 ABC-transporter extension domain Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 Gene3D G3DSA:3.40.50.300 1 284 2.0E-81 T 12-10-2018 Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 552 1.3E-288 T 12-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 SUPERFAMILY SSF52540 19 242 5.24E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 SUPERFAMILY SSF52540 301 523 2.88E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 Pfam PF00005 ABC transporter 339 472 1.2E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 Gene3D G3DSA:3.40.50.300 285 552 4.5E-74 T 12-10-2018 Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 SMART SM00382 347 525 1.1E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1448 841d5f0e8ef5548a8e7ad5755e0d965d 553 SMART SM00382 31 241 1.4E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4073 40d6a19e81611c4187b917064613a006 748 Pfam PF00563 EAL domain 486 720 2.6E-70 T 12-10-2018 IPR001633 EAL domain Alide_4073 40d6a19e81611c4187b917064613a006 748 SUPERFAMILY SSF55073 307 471 4.63E-42 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_4073 40d6a19e81611c4187b917064613a006 748 Pfam PF00672 HAMP domain 244 292 2.1E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4073 40d6a19e81611c4187b917064613a006 748 SUPERFAMILY SSF141868 485 732 2.62E-85 T 12-10-2018 IPR035919 EAL domain superfamily Alide_4073 40d6a19e81611c4187b917064613a006 748 Gene3D G3DSA:3.30.70.270 299 481 3.5E-56 T 12-10-2018 Alide_4073 40d6a19e81611c4187b917064613a006 748 Gene3D G3DSA:1.20.1480.50 211 298 7.9E-11 T 12-10-2018 Alide_4073 40d6a19e81611c4187b917064613a006 748 SUPERFAMILY SSF158472 244 293 6.41E-8 T 12-10-2018 Alide_4073 40d6a19e81611c4187b917064613a006 748 SMART SM00267 291 469 3.1E-54 T 12-10-2018 IPR000160 GGDEF domain Alide_4073 40d6a19e81611c4187b917064613a006 748 Pfam PF00990 Diguanylate cyclase, GGDEF domain 302 464 9.5E-44 T 12-10-2018 IPR000160 GGDEF domain Alide_4073 40d6a19e81611c4187b917064613a006 748 SMART SM00052 479 725 7.3E-106 T 12-10-2018 IPR001633 EAL domain Alide_4073 40d6a19e81611c4187b917064613a006 748 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 299 468 7.8E-37 T 12-10-2018 IPR000160 GGDEF domain Alide_4073 40d6a19e81611c4187b917064613a006 748 Gene3D G3DSA:3.20.20.450 482 737 4.8E-96 T 12-10-2018 IPR035919 EAL domain superfamily Alide_4073 40d6a19e81611c4187b917064613a006 748 SMART SM00304 244 296 5.4E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4073 40d6a19e81611c4187b917064613a006 748 Pfam PF02203 Tar ligand binding domain homologue 27 204 4.4E-22 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 Alide_0891 67581e108668edab9e08fab637a1675d 129 SUPERFAMILY SSF141734 2 121 1.96E-47 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Alide_0891 67581e108668edab9e08fab637a1675d 129 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 29 106 1.9E-33 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Alide_0891 67581e108668edab9e08fab637a1675d 129 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 3 110 31.539 T 12-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Alide_0891 67581e108668edab9e08fab637a1675d 129 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 52 106 4.0E-25 T 12-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Alide_0891 67581e108668edab9e08fab637a1675d 129 Gene3D G3DSA:3.10.20.400 1 97 1.5E-37 T 12-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Alide_0486 caee02b2392c7bc97790fcf6dd0f324c 304 Gene3D G3DSA:3.30.950.10 128 250 6.4E-29 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Alide_0486 caee02b2392c7bc97790fcf6dd0f324c 304 SUPERFAMILY SSF53790 16 242 9.68E-69 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Alide_0486 caee02b2392c7bc97790fcf6dd0f324c 304 Gene3D G3DSA:3.40.1010.10 3 127 9.6E-42 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Alide_0486 caee02b2392c7bc97790fcf6dd0f324c 304 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 17 244 33.008 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Alide_0486 caee02b2392c7bc97790fcf6dd0f324c 304 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 18 222 1.1E-31 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Alide_0486 caee02b2392c7bc97790fcf6dd0f324c 304 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 18 291 8.9E-67 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Alide_0486 caee02b2392c7bc97790fcf6dd0f324c 304 PIRSF PIRSF005917 5 296 2.0E-90 T 12-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Alide_0486 caee02b2392c7bc97790fcf6dd0f324c 304 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 98 109 - T 12-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 Alide_0456 00c45c8817d9c113b267327dafd48447 127 PRINTS PR01650 Bacterial translocase SecE signature 43 64 2.2E-8 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Alide_0456 00c45c8817d9c113b267327dafd48447 127 PRINTS PR01650 Bacterial translocase SecE signature 88 108 2.2E-8 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Alide_0456 00c45c8817d9c113b267327dafd48447 127 PRINTS PR01650 Bacterial translocase SecE signature 64 84 2.2E-8 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Alide_0456 00c45c8817d9c113b267327dafd48447 127 Hamap MF_00422 Protein translocase subunit SecE [secE]. 65 122 10.205 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Alide_0456 00c45c8817d9c113b267327dafd48447 127 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 68 118 1.8E-15 T 12-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Alide_0456 00c45c8817d9c113b267327dafd48447 127 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 118 6.8E-18 T 12-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Alide_0456 00c45c8817d9c113b267327dafd48447 127 Gene3D G3DSA:1.20.5.1030 65 122 3.6E-15 T 12-10-2018 IPR038379 SecE superfamily Alide_2806 461ed6c6c5f3b0cf5aca149413111867 191 Gene3D G3DSA:3.40.30.10 1 190 1.4E-55 T 12-10-2018 Alide_2806 461ed6c6c5f3b0cf5aca149413111867 191 PIRSF PIRSF000239 3 191 1.1E-44 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Alide_2806 461ed6c6c5f3b0cf5aca149413111867 191 Pfam PF00578 AhpC/TSA family 11 136 8.1E-30 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Alide_2806 461ed6c6c5f3b0cf5aca149413111867 191 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 191 1.1E-90 T 12-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_2806 461ed6c6c5f3b0cf5aca149413111867 191 SUPERFAMILY SSF52833 22 190 2.3E-50 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2806 461ed6c6c5f3b0cf5aca149413111867 191 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 186 1.4E-5 T 12-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Alide_0949 adcd97858096d4bdec3119217a18e39d 409 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 6.7E-37 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Alide_0949 adcd97858096d4bdec3119217a18e39d 409 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Alide_0949 adcd97858096d4bdec3119217a18e39d 409 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Alide_0949 adcd97858096d4bdec3119217a18e39d 409 SUPERFAMILY SSF52283 7 134 4.25E-48 T 12-10-2018 Alide_0949 adcd97858096d4bdec3119217a18e39d 409 Gene3D G3DSA:3.40.50.720 109 297 1.3E-102 T 12-10-2018 Alide_0949 adcd97858096d4bdec3119217a18e39d 409 Gene3D G3DSA:3.30.70.260 328 408 6.1E-32 T 12-10-2018 Alide_0949 adcd97858096d4bdec3119217a18e39d 409 Gene3D G3DSA:3.40.50.720 14 312 1.3E-102 T 12-10-2018 Alide_0949 adcd97858096d4bdec3119217a18e39d 409 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 5.6E-48 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Alide_0949 adcd97858096d4bdec3119217a18e39d 409 SUPERFAMILY SSF51735 108 295 6.21E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0949 adcd97858096d4bdec3119217a18e39d 409 SUPERFAMILY SSF55021 332 408 9.16E-17 T 12-10-2018 Alide_0949 adcd97858096d4bdec3119217a18e39d 409 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 12-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Alide_0906 acd81b0214761206afabb043fa22e0d5 203 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 77 4.1E-16 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_0906 acd81b0214761206afabb043fa22e0d5 203 Gene3D G3DSA:1.20.1050.10 80 187 2.4E-74 T 12-10-2018 Alide_0906 acd81b0214761206afabb043fa22e0d5 203 Pfam PF00043 Glutathione S-transferase, C-terminal domain 114 188 6.3E-7 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal Alide_0906 acd81b0214761206afabb043fa22e0d5 203 SUPERFAMILY SSF47616 73 202 1.85E-23 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_0906 acd81b0214761206afabb043fa22e0d5 203 SUPERFAMILY SSF52833 1 101 1.48E-26 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0906 acd81b0214761206afabb043fa22e0d5 203 Gene3D G3DSA:3.40.30.10 2 195 2.4E-74 T 12-10-2018 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 SMART SM00919 174 411 8.1E-135 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 Pfam PF00390 Malic enzyme, N-terminal domain 31 162 1.2E-25 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 Gene3D G3DSA:3.40.50.10380 8 171 7.6E-67 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 Gene3D G3DSA:3.40.50.10750 584 738 1.1E-86 T 12-10-2018 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 Pfam PF01515 Phosphate acetyl/butaryl transferase 441 762 1.0E-88 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 Gene3D G3DSA:3.40.50.10950 457 762 1.1E-86 T 12-10-2018 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 SUPERFAMILY SSF53223 21 172 1.29E-51 T 12-10-2018 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 SUPERFAMILY SSF51735 174 462 1.35E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 Pfam PF03949 Malic enzyme, NAD binding domain 176 371 7.0E-22 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 Gene3D G3DSA:3.40.50.720 172 456 9.8E-81 T 12-10-2018 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 SMART SM01274 29 162 7.5E-74 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 PIRSF PIRSF036684 9 769 0.0 T 12-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 Pfam PF12434 Malate dehydrogenase enzyme 11 27 1.7E-7 T 12-10-2018 IPR032683 Malate dehydrogenase enzyme, N-terminal Alide_4374 87e6c7b111f5d921c5f4cfa7c62165d1 769 SUPERFAMILY SSF53659 440 765 1.32E-86 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 216 227 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 688 705 - T 12-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 SUPERFAMILY SSF54292 4 103 3.6E-30 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 4 77 2.2E-17 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 SUPERFAMILY SSF53706 245 851 8.25E-194 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 244 295 1.2E-15 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 SMART SM00926 243 296 3.2E-19 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 SUPERFAMILY SSF54862 78 236 2.58E-26 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Gene3D G3DSA:3.30.70.20 153 234 5.1E-20 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 249 942 7.7E-212 T 12-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Pfam PF01568 Molydopterin dinucleotide binding domain 833 939 3.0E-27 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Gene3D G3DSA:3.40.228.10 393 591 3.7E-178 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Gene3D G3DSA:3.10.20.740 5 115 6.3E-25 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Gene3D G3DSA:2.40.40.20 823 945 5.1E-40 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 PIRSF PIRSF036643 1 952 0.0 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 SUPERFAMILY SSF50692 796 942 4.97E-43 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Gene3D G3DSA:3.40.50.740 326 790 3.7E-178 T 12-10-2018 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Pfam PF00384 Molybdopterin oxidoreductase 299 742 2.0E-83 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Pfam PF13187 4Fe-4S dicluster domain 172 230 4.3E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3389 fbb2fc13b03e89b908e8b196e85e4ef8 953 Gene3D G3DSA:2.20.25.90 244 296 3.8E-21 T 12-10-2018 Alide_3118 d1c1ea3615a4f29b07942b50ebd67622 579 Gene3D G3DSA:3.40.50.300 363 578 1.6E-65 T 12-10-2018 Alide_3118 d1c1ea3615a4f29b07942b50ebd67622 579 Pfam PF02562 PhoH-like protein 365 565 6.6E-53 T 12-10-2018 IPR003714 PhoH-like protein GO:0005524 Alide_3118 d1c1ea3615a4f29b07942b50ebd67622 579 SUPERFAMILY SSF52540 364 558 1.19E-29 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3118 d1c1ea3615a4f29b07942b50ebd67622 579 SUPERFAMILY SSF88723 118 269 7.65E-11 T 12-10-2018 IPR029060 PIN-like domain superfamily Alide_3118 d1c1ea3615a4f29b07942b50ebd67622 579 SMART SM00670 119 255 9.0E-10 T 12-10-2018 IPR002716 PIN domain Alide_3118 d1c1ea3615a4f29b07942b50ebd67622 579 Gene3D G3DSA:3.40.50.1010 117 270 8.7E-23 T 12-10-2018 Alide_3118 d1c1ea3615a4f29b07942b50ebd67622 579 Pfam PF13638 PIN domain 121 268 2.4E-37 T 12-10-2018 IPR002716 PIN domain Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 148 159 4.8E-18 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 278 4.8E-18 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 62 81 4.8E-18 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 281 304 4.8E-18 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 17 315 1.1E-91 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 90 99 1.8E-27 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 297 311 1.8E-27 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 232 241 1.8E-27 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 147 164 1.8E-27 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 52 74 1.8E-27 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 273 278 1.8E-27 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 Gene3D G3DSA:3.40.50.1370 148 303 1.3E-89 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 62 69 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 168 313 8.7E-25 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 17 160 4.9E-37 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 Gene3D G3DSA:3.40.50.1370 17 312 1.3E-89 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 SUPERFAMILY SSF53671 17 318 8.9E-93 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Alide_3625 365bbad98a243e771ec4ed2102fbec79 320 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 15 318 40.529 T 12-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 Gene3D G3DSA:1.20.140.10 240 387 3.6E-46 T 12-10-2018 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 Gene3D G3DSA:1.10.540.10 4 128 2.0E-22 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 343 362 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 118 2.1E-17 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 PIRSF PIRSF016578 248 387 1.8E-13 T 12-10-2018 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 PIRSF PIRSF016578 139 199 2.1E-4 T 12-10-2018 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 PIRSF PIRSF016578 13 92 27.0 T 12-10-2018 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 385 1.6E-43 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 Gene3D G3DSA:2.40.110.10 130 239 3.5E-30 T 12-10-2018 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 SUPERFAMILY SSF47203 233 386 6.77E-50 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 SUPERFAMILY SSF56645 6 245 2.75E-52 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3285 3429b4999b16683f86d70a71164d1e60 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 223 5.7E-16 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3722 8a161c59e54cc9498353e8d10261873e 224 SUPERFAMILY SSF52172 102 223 1.28E-19 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3722 8a161c59e54cc9498353e8d10261873e 224 Pfam PF00072 Response regulator receiver domain 105 214 2.2E-12 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3722 8a161c59e54cc9498353e8d10261873e 224 SMART SM00448 103 218 1.8E-8 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3722 8a161c59e54cc9498353e8d10261873e 224 Gene3D G3DSA:3.40.50.2300 94 224 6.4E-20 T 12-10-2018 Alide_3722 8a161c59e54cc9498353e8d10261873e 224 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 14 60 2.7E-10 T 12-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 Alide_3722 8a161c59e54cc9498353e8d10261873e 224 Pfam PF12728 Helix-turn-helix domain 14 62 4.3E-10 T 12-10-2018 Alide_3722 8a161c59e54cc9498353e8d10261873e 224 SUPERFAMILY SSF46955 14 63 4.58E-7 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_3722 8a161c59e54cc9498353e8d10261873e 224 Gene3D G3DSA:1.10.1660.10 12 71 2.3E-7 T 12-10-2018 Alide_3367 1ed4b2b511faa02d225d369dd73b09b4 216 SUPERFAMILY SSF160443 131 213 6.93E-19 T 12-10-2018 IPR036063 Smr domain superfamily Alide_3367 1ed4b2b511faa02d225d369dd73b09b4 216 Pfam PF01713 Smr domain 133 213 4.6E-24 T 12-10-2018 IPR002625 Smr domain Alide_3367 1ed4b2b511faa02d225d369dd73b09b4 216 SMART SM00463 130 214 4.1E-11 T 12-10-2018 IPR002625 Smr domain Alide_3367 1ed4b2b511faa02d225d369dd73b09b4 216 Gene3D G3DSA:3.30.1370.110 85 216 1.3E-42 T 12-10-2018 Alide_4060 422669be977060e4368f62cc0cc4e28c 374 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 374 102.814 T 12-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Alide_4060 422669be977060e4368f62cc0cc4e28c 374 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 13 297 1.4E-99 T 12-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Alide_4060 422669be977060e4368f62cc0cc4e28c 374 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 14 291 2.1E-56 T 12-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Alide_4060 422669be977060e4368f62cc0cc4e28c 374 Gene3D G3DSA:3.30.590.20 1 371 2.2E-101 T 12-10-2018 Alide_4060 422669be977060e4368f62cc0cc4e28c 374 SUPERFAMILY SSF55931 5 367 2.35E-110 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Alide_0116 a76c8f935229259f84603397ab4be42f 906 Pfam PF00122 E1-E2 ATPase 163 358 4.0E-42 T 12-10-2018 Alide_0116 a76c8f935229259f84603397ab4be42f 906 SUPERFAMILY SSF81665 61 904 1.31E-101 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_0116 a76c8f935229259f84603397ab4be42f 906 Gene3D G3DSA:2.70.150.10 66 282 4.9E-82 T 12-10-2018 Alide_0116 a76c8f935229259f84603397ab4be42f 906 SUPERFAMILY SSF56784 377 746 1.24E-37 T 12-10-2018 IPR036412 HAD-like superfamily Alide_0116 a76c8f935229259f84603397ab4be42f 906 SUPERFAMILY SSF81653 179 277 2.75E-26 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_0116 a76c8f935229259f84603397ab4be42f 906 Gene3D G3DSA:3.40.1110.10 403 554 5.5E-83 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_0116 a76c8f935229259f84603397ab4be42f 906 Gene3D G3DSA:1.20.1110.10 692 804 5.5E-83 T 12-10-2018 Alide_0116 a76c8f935229259f84603397ab4be42f 906 Gene3D G3DSA:3.40.50.1000 555 691 5.5E-83 T 12-10-2018 IPR023214 HAD superfamily Alide_0116 a76c8f935229259f84603397ab4be42f 906 Gene3D G3DSA:3.40.50.1000 376 388 4.9E-82 T 12-10-2018 IPR023214 HAD superfamily Alide_0116 a76c8f935229259f84603397ab4be42f 906 Pfam PF00702 haloacid dehalogenase-like hydrolase 375 661 1.2E-16 T 12-10-2018 Alide_0116 a76c8f935229259f84603397ab4be42f 906 PRINTS PR01836 Magnesium-transporting ATPase signature 755 768 3.7E-72 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 PRINTS PR01836 Magnesium-transporting ATPase signature 309 328 3.7E-72 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 PRINTS PR01836 Magnesium-transporting ATPase signature 723 734 3.7E-72 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 PRINTS PR01836 Magnesium-transporting ATPase signature 413 426 3.7E-72 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 PRINTS PR01836 Magnesium-transporting ATPase signature 860 881 3.7E-72 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 PRINTS PR01836 Magnesium-transporting ATPase signature 775 791 3.7E-72 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 PRINTS PR01836 Magnesium-transporting ATPase signature 810 831 3.7E-72 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 PRINTS PR01836 Magnesium-transporting ATPase signature 705 720 3.7E-72 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 PRINTS PR01836 Magnesium-transporting ATPase signature 292 308 3.7E-72 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 45 906 0.0 T 12-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 Alide_0116 a76c8f935229259f84603397ab4be42f 906 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 131 415 6.3E-33 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_0116 a76c8f935229259f84603397ab4be42f 906 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 618 736 3.9E-30 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_0116 a76c8f935229259f84603397ab4be42f 906 SMART SM00831 51 124 2.3E-8 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Alide_0116 a76c8f935229259f84603397ab4be42f 906 Pfam PF00689 Cation transporting ATPase, C-terminus 730 896 1.8E-12 T 12-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Alide_0116 a76c8f935229259f84603397ab4be42f 906 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 381 387 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_0116 a76c8f935229259f84603397ab4be42f 906 Gene3D G3DSA:1.20.1110.10 102 375 4.9E-82 T 12-10-2018 Alide_0116 a76c8f935229259f84603397ab4be42f 906 Pfam PF00690 Cation transporter/ATPase, N-terminus 59 119 1.4E-15 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Alide_0513 2ba1ffd6d663193e984ec7e0f9719cf4 225 SMART SM00947 30 192 1.5E-61 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Alide_0513 2ba1ffd6d663193e984ec7e0f9719cf4 225 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 87 107 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Alide_0513 2ba1ffd6d663193e984ec7e0f9719cf4 225 SUPERFAMILY SSF53056 4 201 9.29E-58 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Alide_0513 2ba1ffd6d663193e984ec7e0f9719cf4 225 Pfam PF00484 Carbonic anhydrase 37 188 3.7E-49 T 12-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Alide_0513 2ba1ffd6d663193e984ec7e0f9719cf4 225 Gene3D G3DSA:3.40.1050.10 2 202 1.7E-63 T 12-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 Alide_0513 2ba1ffd6d663193e984ec7e0f9719cf4 225 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 12-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 94 436 1.4E-116 T 12-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 SMART SM00387 327 440 5.0E-38 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2484 744d0787fb826b3dc1878367c40733b1 458 SMART SM00091 96 163 1.1E-6 T 12-10-2018 IPR000014 PAS domain Alide_2484 744d0787fb826b3dc1878367c40733b1 458 SUPERFAMILY SSF55874 261 438 4.06E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2484 744d0787fb826b3dc1878367c40733b1 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 206 271 1.1E-20 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 Gene3D G3DSA:3.30.450.20 80 202 2.1E-8 T 12-10-2018 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 Gene3D G3DSA:1.10.287.130 203 272 1.9E-24 T 12-10-2018 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 Pfam PF11808 Domain of unknown function (DUF3329) 3 87 2.8E-9 T 12-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 Pfam PF13188 PAS domain 100 149 4.7E-8 T 12-10-2018 IPR000014 PAS domain Alide_2484 744d0787fb826b3dc1878367c40733b1 458 SMART SM00388 206 272 1.3E-22 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 5.9E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 393 5.9E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 437 5.9E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 379 5.9E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 438 3.6E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2484 744d0787fb826b3dc1878367c40733b1 458 SUPERFAMILY SSF47384 193 271 2.55E-21 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_2484 744d0787fb826b3dc1878367c40733b1 458 SUPERFAMILY SSF55785 83 196 2.79E-9 T 12-10-2018 IPR035965 PAS domain superfamily Alide_2484 744d0787fb826b3dc1878367c40733b1 458 Gene3D G3DSA:3.30.565.10 291 446 5.6E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2644 fce9222170692da2f6b4f9d303330d74 420 Pfam PF01926 50S ribosome-binding GTPase 40 137 1.8E-6 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_2644 fce9222170692da2f6b4f9d303330d74 420 Gene3D G3DSA:3.40.50.300 20 214 8.7E-16 T 12-10-2018 Alide_2644 fce9222170692da2f6b4f9d303330d74 420 SUPERFAMILY SSF52540 34 200 1.73E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3378 adecaddce7118620c31404f308b08869 288 Pfam PF02634 FdhD/NarQ family 46 281 6.3E-77 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Alide_3378 adecaddce7118620c31404f308b08869 288 Gene3D G3DSA:3.40.140.10 136 286 2.2E-39 T 12-10-2018 Alide_3378 adecaddce7118620c31404f308b08869 288 SUPERFAMILY SSF53927 28 282 3.01E-68 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Alide_3378 adecaddce7118620c31404f308b08869 288 PIRSF PIRSF015626 6 286 1.9E-73 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Alide_3378 adecaddce7118620c31404f308b08869 288 Gene3D G3DSA:3.10.20.10 47 129 1.8E-10 T 12-10-2018 Alide_3378 adecaddce7118620c31404f308b08869 288 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 24 282 26.597 T 12-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 SUPERFAMILY SSF51735 7 245 2.46E-82 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.4E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.4E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.4E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.4E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.4E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 2.4E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 244 1.0E-97 T 12-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.9E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.9E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.9E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 243 1.2E-67 T 12-10-2018 Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 189 1.0E-4 T 12-10-2018 Alide_3184 dc1eaea8b00a0f4d34e5a7cfd51c7737 245 Gene3D G3DSA:3.40.50.720 3 245 4.6E-82 T 12-10-2018 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 ProSitePatterns PS00211 ABC transporters family signature. 523 537 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 Gene3D G3DSA:3.30.190.20 156 272 5.3E-243 T 12-10-2018 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 SUPERFAMILY SSF52540 30 605 4.15E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 Gene3D G3DSA:1.20.1580.10 767 909 3.6E-138 T 12-10-2018 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 Gene3D G3DSA:1.20.1580.10 116 528 5.3E-243 T 12-10-2018 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 ProSitePatterns PS00211 ABC transporters family signature. 909 923 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 Gene3D G3DSA:3.40.50.300 693 1015 3.6E-138 T 12-10-2018 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 30 642 2.3E-251 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 Gene3D G3DSA:1.10.8.280 315 435 5.3E-243 T 12-10-2018 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 Hamap MF_00205 UvrABC system protein A [uvrA]. 27 1019 21.841 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 Pfam PF00005 ABC transporter 699 939 2.0E-8 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 SUPERFAMILY SSF52540 697 993 7.02E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4284 59e7272ca77306a4c28fcdf570aa75ca 1022 Gene3D G3DSA:3.40.50.300 32 630 5.3E-243 T 12-10-2018 Alide_3169 e6b6b2dfb540ab65d0a4828a61538258 130 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 129 8.9E-23 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Alide_3169 e6b6b2dfb540ab65d0a4828a61538258 130 Gene3D G3DSA:3.90.470.20 1 129 1.6E-33 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Alide_3169 e6b6b2dfb540ab65d0a4828a61538258 130 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 96 4.0E-39 T 12-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Alide_3169 e6b6b2dfb540ab65d0a4828a61538258 130 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 125 1.3E-21 T 12-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Alide_3169 e6b6b2dfb540ab65d0a4828a61538258 130 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 129 1.5E-27 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Alide_3169 e6b6b2dfb540ab65d0a4828a61538258 130 SUPERFAMILY SSF56214 1 128 8.24E-29 T 12-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Alide_3169 e6b6b2dfb540ab65d0a4828a61538258 130 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 129 23.43 T 12-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Alide_2117 b325904eda88b33509b6770f318f9bfd 456 SUPERFAMILY SSF141523 195 328 1.57E-13 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Alide_2117 b325904eda88b33509b6770f318f9bfd 456 Gene3D G3DSA:2.40.440.10 148 404 4.3E-19 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Alide_2117 b325904eda88b33509b6770f318f9bfd 456 Pfam PF03734 L,D-transpeptidase catalytic domain 197 329 8.6E-14 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Alide_4008 72045578ae1d81f6d383ec2a781c02d1 369 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 41 55 7.2E-9 T 12-10-2018 Alide_4008 72045578ae1d81f6d383ec2a781c02d1 369 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 130 154 7.2E-9 T 12-10-2018 Alide_4008 72045578ae1d81f6d383ec2a781c02d1 369 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 101 113 7.2E-9 T 12-10-2018 Alide_4008 72045578ae1d81f6d383ec2a781c02d1 369 SUPERFAMILY SSF53335 18 185 1.37E-22 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_4008 72045578ae1d81f6d383ec2a781c02d1 369 Gene3D G3DSA:3.40.50.150 20 207 3.1E-18 T 12-10-2018 Alide_4008 72045578ae1d81f6d383ec2a781c02d1 369 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 104 110 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Alide_3152 bcbdb36fa272bffb5e3027ba21fd4f49 633 Pfam PF13727 CoA-binding domain 89 236 1.2E-6 T 12-10-2018 Alide_3152 bcbdb36fa272bffb5e3027ba21fd4f49 633 Gene3D G3DSA:3.40.50.720 277 601 8.2E-109 T 12-10-2018 Alide_3152 bcbdb36fa272bffb5e3027ba21fd4f49 633 Gene3D G3DSA:3.40.50.720 138 262 1.2E-31 T 12-10-2018 Alide_3152 bcbdb36fa272bffb5e3027ba21fd4f49 633 Pfam PF02719 Polysaccharide biosynthesis protein 281 586 2.3E-119 T 12-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Alide_3152 bcbdb36fa272bffb5e3027ba21fd4f49 633 SUPERFAMILY SSF51735 141 268 2.32E-16 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3152 bcbdb36fa272bffb5e3027ba21fd4f49 633 SUPERFAMILY SSF51735 280 565 8.61E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2635 06aa9e236789b0c8783eac33d552af73 397 SUPERFAMILY SSF53901 6 384 1.06E-42 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2635 06aa9e236789b0c8783eac33d552af73 397 Gene3D G3DSA:3.40.47.10 126 385 9.3E-89 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2635 06aa9e236789b0c8783eac33d552af73 397 Gene3D G3DSA:3.40.47.10 8 266 9.3E-89 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2635 06aa9e236789b0c8783eac33d552af73 397 ProSitePatterns PS00737 Thiolases signature 2. 329 345 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_2635 06aa9e236789b0c8783eac33d552af73 397 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 385 7.0E-75 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2635 06aa9e236789b0c8783eac33d552af73 397 PIRSF PIRSF000429 1 390 2.7E-75 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2635 06aa9e236789b0c8783eac33d552af73 397 Pfam PF00108 Thiolase, N-terminal domain 8 251 1.9E-33 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_2635 06aa9e236789b0c8783eac33d552af73 397 Pfam PF02803 Thiolase, C-terminal domain 261 383 4.7E-19 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_0507 c95fce73d983006ce95c48afcf201b8c 481 Pfam PF07690 Major Facilitator Superfamily 47 387 2.0E-10 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_0507 c95fce73d983006ce95c48afcf201b8c 481 Gene3D G3DSA:1.20.1250.20 3 242 5.2E-78 T 12-10-2018 Alide_0507 c95fce73d983006ce95c48afcf201b8c 481 TIGRFAM TIGR00886 2A0108: nitrite transporter 39 433 1.3E-93 T 12-10-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 Alide_0507 c95fce73d983006ce95c48afcf201b8c 481 SUPERFAMILY SSF103473 22 474 2.88E-35 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_0507 c95fce73d983006ce95c48afcf201b8c 481 Gene3D G3DSA:1.20.1250.20 243 479 3.5E-71 T 12-10-2018 Alide_0941 a490617c4586844a2b5bd34707315a02 327 PIRSF PIRSF017082 1 326 2.0E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0941 a490617c4586844a2b5bd34707315a02 327 Gene3D G3DSA:3.40.190.10 129 252 9.1E-113 T 12-10-2018 Alide_0941 a490617c4586844a2b5bd34707315a02 327 SUPERFAMILY SSF53850 81 285 2.15E-13 T 12-10-2018 Alide_0941 a490617c4586844a2b5bd34707315a02 327 Gene3D G3DSA:3.40.190.150 31 317 9.1E-113 T 12-10-2018 Alide_0941 a490617c4586844a2b5bd34707315a02 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 321 4.3E-91 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1355 6bd836e59e255cab59a2f7edfcb7456b 320 SUPERFAMILY SSF52540 11 157 7.8E-21 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1355 6bd836e59e255cab59a2f7edfcb7456b 320 Pfam PF01715 IPP transferase 46 295 2.1E-83 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Alide_1355 6bd836e59e255cab59a2f7edfcb7456b 320 Gene3D G3DSA:1.10.20.140 119 190 2.4E-91 T 12-10-2018 Alide_1355 6bd836e59e255cab59a2f7edfcb7456b 320 Gene3D G3DSA:3.40.50.300 12 297 2.4E-91 T 12-10-2018 Alide_1355 6bd836e59e255cab59a2f7edfcb7456b 320 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 9 296 5.7E-88 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Alide_1355 6bd836e59e255cab59a2f7edfcb7456b 320 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 8 312 29.083 T 12-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Alide_3532 a36c3d15c892e6233ab8d73fb3877f20 63 SUPERFAMILY SSF47413 10 53 4.02E-7 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_3532 a36c3d15c892e6233ab8d73fb3877f20 63 Pfam PF13560 Helix-turn-helix domain 12 52 2.0E-7 T 12-10-2018 Alide_3532 a36c3d15c892e6233ab8d73fb3877f20 63 Gene3D G3DSA:1.10.260.40 4 62 1.9E-9 T 12-10-2018 Alide_3491 ad0005932231e20c7ce5672bf105b152 158 SUPERFAMILY SSF75217 1 151 6.41E-41 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases Alide_3491 ad0005932231e20c7ce5672bf105b152 158 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 153 31.444 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 Alide_3491 ad0005932231e20c7ce5672bf105b152 158 PIRSF PIRSF029256 1 155 4.2E-60 T 12-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 Alide_3491 ad0005932231e20c7ce5672bf105b152 158 Gene3D G3DSA:3.40.1280.10 1 154 3.6E-61 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Alide_3491 ad0005932231e20c7ce5672bf105b152 158 Pfam PF00588 SpoU rRNA Methylase family 2 144 2.6E-29 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Alide_1211 e12e260e34e74d482e7acf0eb0a3f293 323 Pfam PF03193 RsgA GTPase 69 252 4.0E-41 T 12-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 Alide_1211 e12e260e34e74d482e7acf0eb0a3f293 323 Gene3D G3DSA:3.40.50.300 72 252 6.1E-37 T 12-10-2018 Alide_1211 e12e260e34e74d482e7acf0eb0a3f293 323 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 8 321 31.954 T 12-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Alide_1211 e12e260e34e74d482e7acf0eb0a3f293 323 Gene3D G3DSA:1.10.40.50 254 323 3.0E-16 T 12-10-2018 Alide_1211 e12e260e34e74d482e7acf0eb0a3f293 323 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 42 313 1.1E-52 T 12-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 Alide_1211 e12e260e34e74d482e7acf0eb0a3f293 323 Gene3D G3DSA:2.40.50.140 4 71 3.4E-18 T 12-10-2018 Alide_1211 e12e260e34e74d482e7acf0eb0a3f293 323 SUPERFAMILY SSF52540 85 308 2.02E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1211 e12e260e34e74d482e7acf0eb0a3f293 323 SUPERFAMILY SSF50249 8 58 9.85E-7 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0143 a0f06cf68b26df71519729c185c8efa3 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 250 8.2E-56 T 12-10-2018 Alide_0143 a0f06cf68b26df71519729c185c8efa3 268 SUPERFAMILY SSF51735 9 252 8.98E-76 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0143 a0f06cf68b26df71519729c185c8efa3 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.7E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0143 a0f06cf68b26df71519729c185c8efa3 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.7E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0143 a0f06cf68b26df71519729c185c8efa3 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.7E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0143 a0f06cf68b26df71519729c185c8efa3 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.7E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0143 a0f06cf68b26df71519729c185c8efa3 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.7E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0143 a0f06cf68b26df71519729c185c8efa3 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.7E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0143 a0f06cf68b26df71519729c185c8efa3 268 Gene3D G3DSA:3.40.50.720 1 254 1.6E-74 T 12-10-2018 Alide_0043 069a0a0e693bf831e90e201cf2224594 475 Gene3D G3DSA:3.30.565.10 313 467 8.0E-24 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0043 069a0a0e693bf831e90e201cf2224594 475 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 305 4.9E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0043 069a0a0e693bf831e90e201cf2224594 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 445 1.4E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0043 069a0a0e693bf831e90e201cf2224594 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 1.4E-5 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0043 069a0a0e693bf831e90e201cf2224594 475 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 464 7.8E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0043 069a0a0e693bf831e90e201cf2224594 475 SUPERFAMILY SSF55874 295 464 5.89E-26 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0043 069a0a0e693bf831e90e201cf2224594 475 Pfam PF08521 Two-component sensor kinase N-terminal 27 162 1.4E-26 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal Alide_0043 069a0a0e693bf831e90e201cf2224594 475 SMART SM00388 241 306 1.2E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0043 069a0a0e693bf831e90e201cf2224594 475 SMART SM00387 352 468 1.8E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0043 069a0a0e693bf831e90e201cf2224594 475 SUPERFAMILY SSF47384 224 303 9.42E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_0043 069a0a0e693bf831e90e201cf2224594 475 Gene3D G3DSA:1.10.287.130 192 307 8.9E-17 T 12-10-2018 Alide_1236 ac32839f1a5d31e543638a4159e70552 381 Gene3D G3DSA:3.40.50.150 3 193 4.8E-27 T 12-10-2018 Alide_1236 ac32839f1a5d31e543638a4159e70552 381 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 64 76 - T 12-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 Alide_1236 ac32839f1a5d31e543638a4159e70552 381 SUPERFAMILY SSF53335 5 175 3.24E-31 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_1236 ac32839f1a5d31e543638a4159e70552 381 Pfam PF00145 C-5 cytosine-specific DNA methylase 62 176 2.5E-21 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Alide_0559 4b975ab3ea3c5a96e4524088a4c41c3d 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 328 8.0E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0559 4b975ab3ea3c5a96e4524088a4c41c3d 332 Gene3D G3DSA:3.40.190.10 134 257 1.5E-114 T 12-10-2018 Alide_0559 4b975ab3ea3c5a96e4524088a4c41c3d 332 PIRSF PIRSF017082 1 332 5.2E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0559 4b975ab3ea3c5a96e4524088a4c41c3d 332 Gene3D G3DSA:3.40.190.150 37 322 1.5E-114 T 12-10-2018 Alide_0559 4b975ab3ea3c5a96e4524088a4c41c3d 332 SUPERFAMILY SSF53850 120 292 1.36E-12 T 12-10-2018 Alide_0388 eb674995a07778984c775727d036c844 309 Gene3D G3DSA:3.40.190.290 109 309 1.8E-39 T 12-10-2018 Alide_0388 eb674995a07778984c775727d036c844 309 Gene3D G3DSA:1.10.10.10 19 108 8.2E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0388 eb674995a07778984c775727d036c844 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 80 5.4E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0388 eb674995a07778984c775727d036c844 309 SUPERFAMILY SSF46785 18 129 1.97E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0388 eb674995a07778984c775727d036c844 309 Pfam PF03466 LysR substrate binding domain 105 308 6.1E-44 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0388 eb674995a07778984c775727d036c844 309 SUPERFAMILY SSF53850 105 308 1.69E-44 T 12-10-2018 Alide_3432 3f78f4b8a31582e9689bda5df2577dbe 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 322 7.1E-57 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3432 3f78f4b8a31582e9689bda5df2577dbe 327 Gene3D G3DSA:3.40.190.150 31 315 1.8E-83 T 12-10-2018 Alide_3432 3f78f4b8a31582e9689bda5df2577dbe 327 Gene3D G3DSA:3.40.190.10 127 251 1.8E-83 T 12-10-2018 Alide_3432 3f78f4b8a31582e9689bda5df2577dbe 327 PIRSF PIRSF017082 1 326 3.4E-65 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1762 c7df2afcce11ab60bd92b1c320629223 163 Gene3D G3DSA:3.30.70.260 1 78 8.5E-34 T 12-10-2018 Alide_1762 c7df2afcce11ab60bd92b1c320629223 163 Pfam PF13710 ACT domain 13 73 3.4E-14 T 12-10-2018 Alide_1762 c7df2afcce11ab60bd92b1c320629223 163 SUPERFAMILY SSF55021 79 162 6.41E-25 T 12-10-2018 Alide_1762 c7df2afcce11ab60bd92b1c320629223 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 5.0E-36 T 12-10-2018 Alide_1762 c7df2afcce11ab60bd92b1c320629223 163 Gene3D G3DSA:3.30.70.1150 83 163 1.8E-29 T 12-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Alide_1762 c7df2afcce11ab60bd92b1c320629223 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 6.0E-27 T 12-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Alide_1762 c7df2afcce11ab60bd92b1c320629223 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 157 1.7E-61 T 12-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Alide_1762 c7df2afcce11ab60bd92b1c320629223 163 SUPERFAMILY SSF55021 1 76 8.18E-21 T 12-10-2018 Alide_1193 bcb78d4c46e3c244fb3c5b482303bf42 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 293 1.0E-46 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_0177 afa5340750a6b1c37b088a0849fe473c 502 SUPERFAMILY SSF56801 5 501 9.55E-139 T 12-10-2018 Alide_0177 afa5340750a6b1c37b088a0849fe473c 502 ProSitePatterns PS00455 Putative AMP-binding domain signature. 155 166 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_0177 afa5340750a6b1c37b088a0849fe473c 502 Gene3D G3DSA:3.40.50.12780 2 400 5.4E-103 T 12-10-2018 Alide_0177 afa5340750a6b1c37b088a0849fe473c 502 Pfam PF00501 AMP-binding enzyme 11 405 7.0E-94 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0177 afa5340750a6b1c37b088a0849fe473c 502 Gene3D G3DSA:3.30.300.30 401 501 3.5E-30 T 12-10-2018 Alide_0177 afa5340750a6b1c37b088a0849fe473c 502 Pfam PF13193 AMP-binding enzyme C-terminal domain 414 489 9.9E-14 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 SMART SM01080 37 320 1.6E-68 T 12-10-2018 IPR007890 CHASE2 Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 SUPERFAMILY SSF55785 419 538 9.68E-5 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 Gene3D G3DSA:3.30.565.10 614 767 1.6E-37 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 SMART SM00387 655 767 2.4E-33 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 710 720 1.1E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 692 706 1.1E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 751 764 1.1E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 PRINTS PR00344 Bacterial sensor protein C-terminal signature 727 745 1.1E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 PIRSF PIRSF037347 3 768 3.5E-187 T 12-10-2018 IPR017181 Signal transduction histidine kinase, CHASE2 sensor domain-containing, predicted Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 Gene3D G3DSA:3.30.450.20 417 541 7.0E-6 T 12-10-2018 Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 SUPERFAMILY SSF55874 609 765 2.1E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 Pfam PF05226 CHASE2 domain 24 317 9.1E-51 T 12-10-2018 IPR007890 CHASE2 Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 656 765 5.9E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 Gene3D G3DSA:1.10.287.130 542 608 5.8E-6 T 12-10-2018 Alide_3356 d4541b5d029adcfcbeedee7bf01cab6a 768 SUPERFAMILY SSF47384 535 606 7.85E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_4196 88e892e303ca48769356bb912827e910 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 5.0E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4196 88e892e303ca48769356bb912827e910 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 5.0E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4196 88e892e303ca48769356bb912827e910 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 5.0E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4196 88e892e303ca48769356bb912827e910 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 250 1.5E-52 T 12-10-2018 Alide_4196 88e892e303ca48769356bb912827e910 253 Gene3D G3DSA:3.40.50.720 1 252 1.5E-62 T 12-10-2018 Alide_4196 88e892e303ca48769356bb912827e910 253 SUPERFAMILY SSF51735 6 250 2.33E-66 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4196 88e892e303ca48769356bb912827e910 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.5E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4196 88e892e303ca48769356bb912827e910 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 1.5E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4196 88e892e303ca48769356bb912827e910 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.5E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4196 88e892e303ca48769356bb912827e910 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.5E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4196 88e892e303ca48769356bb912827e910 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.5E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4196 88e892e303ca48769356bb912827e910 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.5E-26 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0774 10d893a6deca9e37c287a71ab46e0031 217 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 24 214 3.1E-55 T 12-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like Alide_0774 10d893a6deca9e37c287a71ab46e0031 217 Gene3D G3DSA:2.60.120.590 18 216 1.4E-58 T 12-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily Alide_0774 10d893a6deca9e37c287a71ab46e0031 217 SUPERFAMILY SSF51197 22 216 1.28E-58 T 12-10-2018 Alide_0856 178f36410bc0fc9f28f9cd499dc005d3 265 Gene3D G3DSA:3.40.190.10 125 218 8.3E-72 T 12-10-2018 Alide_0856 178f36410bc0fc9f28f9cd499dc005d3 265 SUPERFAMILY SSF53850 2 263 2.11E-69 T 12-10-2018 Alide_0856 178f36410bc0fc9f28f9cd499dc005d3 265 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 62 75 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site Alide_0856 178f36410bc0fc9f28f9cd499dc005d3 265 SMART SM00079 39 261 8.1E-4 T 12-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Alide_0856 178f36410bc0fc9f28f9cd499dc005d3 265 Gene3D G3DSA:3.40.190.10 40 260 8.3E-72 T 12-10-2018 Alide_0856 178f36410bc0fc9f28f9cd499dc005d3 265 SMART SM00062 39 262 6.9E-66 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_0856 178f36410bc0fc9f28f9cd499dc005d3 265 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 261 5.8E-67 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_3061 edb28d7ad3eecbbcc85596b65d2be1a0 474 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 87 318 9.2E-15 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_3061 edb28d7ad3eecbbcc85596b65d2be1a0 474 Gene3D G3DSA:2.40.30.170 85 328 4.4E-83 T 12-10-2018 Alide_3061 edb28d7ad3eecbbcc85596b65d2be1a0 474 Gene3D G3DSA:2.40.50.100 95 239 4.4E-83 T 12-10-2018 Alide_3061 edb28d7ad3eecbbcc85596b65d2be1a0 474 Gene3D G3DSA:1.10.287.470 130 203 4.4E-83 T 12-10-2018 Alide_3061 edb28d7ad3eecbbcc85596b65d2be1a0 474 SUPERFAMILY SSF111369 85 323 2.09E-54 T 12-10-2018 Alide_3061 edb28d7ad3eecbbcc85596b65d2be1a0 474 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 71 395 2.6E-72 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_3061 edb28d7ad3eecbbcc85596b65d2be1a0 474 Gene3D G3DSA:2.40.420.20 329 393 4.4E-83 T 12-10-2018 Alide_4495 dbeeb2224ecc1a18d75b4cc6f867587e 387 Pfam PF06527 TniQ 1 147 1.7E-19 T 12-10-2018 IPR009492 TniQ Alide_4181 e0f97aa00040b72f9a18ed6d73596f21 157 Gene3D G3DSA:3.10.50.40 3 151 3.9E-41 T 12-10-2018 Alide_4181 e0f97aa00040b72f9a18ed6d73596f21 157 SUPERFAMILY SSF54534 3 137 6.09E-22 T 12-10-2018 Alide_4181 e0f97aa00040b72f9a18ed6d73596f21 157 Gene3D G3DSA:2.40.10.330 69 118 3.9E-41 T 12-10-2018 Alide_2767 20e5e2aee0220ed827a9bd4cd2a41024 287 Pfam PF01177 Asp/Glu/Hydantoin racemase 10 233 1.0E-33 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_2767 20e5e2aee0220ed827a9bd4cd2a41024 287 TIGRFAM TIGR00067 glut_race: glutamate racemase 10 274 8.9E-52 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_2767 20e5e2aee0220ed827a9bd4cd2a41024 287 Hamap MF_00258 Glutamate racemase [murI]. 8 277 31.579 T 12-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_2767 20e5e2aee0220ed827a9bd4cd2a41024 287 Gene3D G3DSA:3.40.50.1860 10 274 8.2E-75 T 12-10-2018 Alide_2767 20e5e2aee0220ed827a9bd4cd2a41024 287 SUPERFAMILY SSF53681 9 112 4.77E-28 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_2767 20e5e2aee0220ed827a9bd4cd2a41024 287 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 76 84 - T 12-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_2767 20e5e2aee0220ed827a9bd4cd2a41024 287 SUPERFAMILY SSF53681 115 278 1.24E-26 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_2767 20e5e2aee0220ed827a9bd4cd2a41024 287 Gene3D G3DSA:3.40.50.1860 102 225 8.2E-75 T 12-10-2018 Alide_3276 ea6b17a5792f4e5c275df3ad8497dc02 382 Gene3D G3DSA:1.20.140.10 237 382 7.8E-31 T 12-10-2018 Alide_3276 ea6b17a5792f4e5c275df3ad8497dc02 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 121 2.2E-23 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3276 ea6b17a5792f4e5c275df3ad8497dc02 382 Gene3D G3DSA:1.10.540.10 4 121 1.8E-29 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3276 ea6b17a5792f4e5c275df3ad8497dc02 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 380 6.5E-22 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3276 ea6b17a5792f4e5c275df3ad8497dc02 382 Gene3D G3DSA:2.40.110.10 127 236 1.9E-36 T 12-10-2018 Alide_3276 ea6b17a5792f4e5c275df3ad8497dc02 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 221 2.1E-20 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3276 ea6b17a5792f4e5c275df3ad8497dc02 382 SUPERFAMILY SSF56645 3 245 3.8E-72 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3276 ea6b17a5792f4e5c275df3ad8497dc02 382 SUPERFAMILY SSF47203 233 381 1.61E-17 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0688 950f40c4188db836b447751afad33892 329 SUPERFAMILY SSF53850 112 317 1.68E-42 T 12-10-2018 Alide_0688 950f40c4188db836b447751afad33892 329 Gene3D G3DSA:3.40.190.290 114 314 6.4E-56 T 12-10-2018 Alide_0688 950f40c4188db836b447751afad33892 329 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 32 84 4.0E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0688 950f40c4188db836b447751afad33892 329 SUPERFAMILY SSF46785 29 133 3.82E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0688 950f40c4188db836b447751afad33892 329 Pfam PF03466 LysR substrate binding domain 112 313 1.7E-42 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0688 950f40c4188db836b447751afad33892 329 Gene3D G3DSA:1.10.10.10 28 109 5.1E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 134 144 4.3E-11 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 173 185 4.3E-11 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 145 156 4.3E-11 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 Hamap MF_00015 LexA repressor [lexA]. 6 221 30.522 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 SUPERFAMILY SSF51306 98 220 5.93E-34 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 Gene3D G3DSA:2.10.109.10 103 224 6.9E-38 T 12-10-2018 Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 SUPERFAMILY SSF46785 6 73 7.75E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 Pfam PF00717 Peptidase S24-like 137 202 5.9E-14 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 Gene3D G3DSA:1.10.10.10 5 72 1.7E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 Pfam PF01726 LexA DNA binding domain 6 68 1.3E-25 T 12-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 Alide_2632 85ebbdeb1da9a6fd14a2b4bc961dc003 224 TIGRFAM TIGR00498 lexA: repressor LexA 6 221 1.6E-65 T 12-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Alide_4224 56fabe480fc7f16fbbd9ff194528461c 436 SUPERFAMILY SSF54373 274 363 1.28E-16 T 12-10-2018 Alide_4224 56fabe480fc7f16fbbd9ff194528461c 436 Gene3D G3DSA:3.50.50.60 1 74 6.6E-12 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4224 56fabe480fc7f16fbbd9ff194528461c 436 Pfam PF01266 FAD dependent oxidoreductase 2 401 3.3E-74 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_4224 56fabe480fc7f16fbbd9ff194528461c 436 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 414 48.44 T 12-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 Alide_4224 56fabe480fc7f16fbbd9ff194528461c 436 Gene3D G3DSA:3.30.9.10 134 362 1.5E-52 T 12-10-2018 Alide_4224 56fabe480fc7f16fbbd9ff194528461c 436 Gene3D G3DSA:3.50.50.60 103 402 1.5E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4224 56fabe480fc7f16fbbd9ff194528461c 436 SUPERFAMILY SSF51905 2 420 4.92E-53 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1491 915fdbac7786e6ffb3063c36cfa80ac9 361 SMART SM00382 30 214 3.7E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1491 915fdbac7786e6ffb3063c36cfa80ac9 361 Gene3D G3DSA:3.40.50.300 4 218 2.1E-68 T 12-10-2018 Alide_1491 915fdbac7786e6ffb3063c36cfa80ac9 361 SUPERFAMILY SSF50331 239 359 1.33E-12 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_1491 915fdbac7786e6ffb3063c36cfa80ac9 361 Gene3D G3DSA:2.40.50.940 223 357 1.6E-8 T 12-10-2018 Alide_1491 915fdbac7786e6ffb3063c36cfa80ac9 361 SUPERFAMILY SSF52540 6 244 6.92E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1491 915fdbac7786e6ffb3063c36cfa80ac9 361 Pfam PF00005 ABC transporter 21 163 1.2E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1491 915fdbac7786e6ffb3063c36cfa80ac9 361 Pfam PF08402 TOBE domain 280 358 3.4E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Alide_1491 915fdbac7786e6ffb3063c36cfa80ac9 361 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1491 915fdbac7786e6ffb3063c36cfa80ac9 361 Gene3D G3DSA:2.40.50.140 287 351 1.6E-8 T 12-10-2018 Alide_2154 cb8193a31c87dfa9f8b43bcc19f83960 201 SUPERFAMILY SSF52972 4 195 1.31E-52 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Alide_2154 cb8193a31c87dfa9f8b43bcc19f83960 201 Pfam PF02545 Maf-like protein 5 195 1.3E-48 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 Alide_2154 cb8193a31c87dfa9f8b43bcc19f83960 201 PIRSF PIRSF006305 2 200 3.7E-45 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 Alide_2154 cb8193a31c87dfa9f8b43bcc19f83960 201 TIGRFAM TIGR00172 maf: septum formation protein Maf 4 194 1.5E-46 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 Alide_2154 cb8193a31c87dfa9f8b43bcc19f83960 201 Gene3D G3DSA:3.90.950.10 1 199 1.1E-65 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Alide_2154 cb8193a31c87dfa9f8b43bcc19f83960 201 Hamap MF_00528 Septum formation protein Maf [maf]. 4 200 29.26 T 12-10-2018 IPR003697 Maf-like protein GO:0047429 Alide_1893 74b414ab260e965049329a98749d56ad 467 SUPERFAMILY SSF103473 11 464 6.41E-54 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1893 74b414ab260e965049329a98749d56ad 467 Gene3D G3DSA:1.20.1250.20 272 466 3.8E-15 T 12-10-2018 Alide_1893 74b414ab260e965049329a98749d56ad 467 Gene3D G3DSA:1.20.1720.10 24 271 5.3E-41 T 12-10-2018 Alide_1893 74b414ab260e965049329a98749d56ad 467 Pfam PF07690 Major Facilitator Superfamily 27 424 1.3E-42 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_4180 485af7f42ce96d55d892bf017842619a 735 Pfam PF00593 TonB dependent receptor 272 732 2.3E-38 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_4180 485af7f42ce96d55d892bf017842619a 735 Gene3D G3DSA:2.170.130.10 70 194 3.7E-21 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_4180 485af7f42ce96d55d892bf017842619a 735 SUPERFAMILY SSF56935 29 735 4.58E-104 T 12-10-2018 Alide_4180 485af7f42ce96d55d892bf017842619a 735 Gene3D G3DSA:2.40.170.20 195 735 2.2E-82 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Alide_4180 485af7f42ce96d55d892bf017842619a 735 Pfam PF07715 TonB-dependent Receptor Plug Domain 78 174 2.4E-14 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_4180 485af7f42ce96d55d892bf017842619a 735 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 80 735 3.8E-108 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Alide_0990 9b6662aeffb3302b3b5848a5c56372a7 557 TIGRFAM TIGR00634 recN: DNA repair protein RecN 3 548 8.1E-149 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Alide_0990 9b6662aeffb3302b3b5848a5c56372a7 557 Gene3D G3DSA:3.40.50.300 1 199 2.0E-36 T 12-10-2018 Alide_0990 9b6662aeffb3302b3b5848a5c56372a7 557 Gene3D G3DSA:3.40.50.300 260 549 1.6E-55 T 12-10-2018 Alide_0990 9b6662aeffb3302b3b5848a5c56372a7 557 PIRSF PIRSF003128 2 553 1.5E-153 T 12-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Alide_0990 9b6662aeffb3302b3b5848a5c56372a7 557 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 505 5.1E-18 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Alide_0990 9b6662aeffb3302b3b5848a5c56372a7 557 SUPERFAMILY SSF52540 1 514 5.16E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 SUPERFAMILY SSF54368 4 102 4.84E-36 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 Gene3D G3DSA:3.10.20.70 4 106 2.0E-37 T 12-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 470 7.9E-199 T 12-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 ProSitePatterns PS00180 Glutamine synthetase signature 1. 52 70 - T 12-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 Pfam PF00120 Glutamine synthetase, catalytic domain 105 468 2.6E-136 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 97 8.6E-29 T 12-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 SMART SM01230 104 381 4.3E-145 T 12-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 Gene3D G3DSA:3.30.590.10 107 459 3.1E-143 T 12-10-2018 Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 SUPERFAMILY SSF55931 104 470 1.77E-135 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Alide_3018 2a2232e8dd0a1f8a0098020dae9b9611 471 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 261 276 - T 12-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Alide_0335 09d73235daab3bb612ade1fa1e902215 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_0335 09d73235daab3bb612ade1fa1e902215 486 Gene3D G3DSA:3.40.309.10 257 451 4.7E-168 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_0335 09d73235daab3bb612ade1fa1e902215 486 Pfam PF00171 Aldehyde dehydrogenase family 13 482 1.7E-149 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_0335 09d73235daab3bb612ade1fa1e902215 486 SUPERFAMILY SSF53720 4 485 6.02E-153 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_0335 09d73235daab3bb612ade1fa1e902215 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_0335 09d73235daab3bb612ade1fa1e902215 486 TIGRFAM TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase 5 485 3.9E-263 T 12-10-2018 IPR017628 2-hydroxymuconic semialdehyde dehydrogenase GO:0016620|GO:0055114 Alide_0335 09d73235daab3bb612ade1fa1e902215 486 Gene3D G3DSA:3.40.605.10 17 474 4.7E-168 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_3252 1c4aaeaf2e19419b9a42fcb718fe27d4 144 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 1.8E-10 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_3252 1c4aaeaf2e19419b9a42fcb718fe27d4 144 SUPERFAMILY SSF54523 12 133 1.2E-27 T 12-10-2018 Alide_3252 1c4aaeaf2e19419b9a42fcb718fe27d4 144 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_3252 1c4aaeaf2e19419b9a42fcb718fe27d4 144 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 32 7.0E-11 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_3252 1c4aaeaf2e19419b9a42fcb718fe27d4 144 Gene3D G3DSA:3.30.700.10 12 141 1.1E-25 T 12-10-2018 Alide_3252 1c4aaeaf2e19419b9a42fcb718fe27d4 144 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 33 118 1.2E-25 T 12-10-2018 IPR031982 Type IV minor pilin ComP Alide_3687 9ec7fe4d5143d8f02af53377140b0317 88 SUPERFAMILY SSF46689 2 73 2.15E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3687 9ec7fe4d5143d8f02af53377140b0317 88 Pfam PF01527 Transposase 2 71 6.4E-21 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1525 9ec7fe4d5143d8f02af53377140b0317 88 SUPERFAMILY SSF46689 2 73 2.15E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1525 9ec7fe4d5143d8f02af53377140b0317 88 Pfam PF01527 Transposase 2 71 6.4E-21 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_3771 9ec7fe4d5143d8f02af53377140b0317 88 SUPERFAMILY SSF46689 2 73 2.15E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3771 9ec7fe4d5143d8f02af53377140b0317 88 Pfam PF01527 Transposase 2 71 6.4E-21 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_0731 f9cc0e0ad01dcc11f646e15982401c54 236 SUPERFAMILY SSF52172 3 129 2.56E-39 T 12-10-2018 IPR011006 CheY-like superfamily Alide_0731 f9cc0e0ad01dcc11f646e15982401c54 236 Gene3D G3DSA:1.10.10.10 124 235 1.4E-37 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0731 f9cc0e0ad01dcc11f646e15982401c54 236 SMART SM00862 155 231 3.4E-28 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_0731 f9cc0e0ad01dcc11f646e15982401c54 236 SMART SM00448 5 116 4.5E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0731 f9cc0e0ad01dcc11f646e15982401c54 236 Pfam PF00072 Response regulator receiver domain 7 117 1.2E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0731 f9cc0e0ad01dcc11f646e15982401c54 236 Gene3D G3DSA:3.40.50.2300 1 123 8.4E-36 T 12-10-2018 Alide_0731 f9cc0e0ad01dcc11f646e15982401c54 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 6.3E-27 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_0731 f9cc0e0ad01dcc11f646e15982401c54 236 SUPERFAMILY SSF46894 128 232 2.04E-31 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_0016 315e04124ba421e2977de7d22425e881 724 Pfam PF06733 DEAD_2 225 280 1.5E-6 T 12-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 Alide_0016 315e04124ba421e2977de7d22425e881 724 SMART SM00487 22 324 1.7E-5 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_0016 315e04124ba421e2977de7d22425e881 724 Gene3D G3DSA:3.40.50.300 528 717 4.5E-25 T 12-10-2018 Alide_0016 315e04124ba421e2977de7d22425e881 724 Gene3D G3DSA:3.40.50.300 24 322 3.4E-37 T 12-10-2018 Alide_0016 315e04124ba421e2977de7d22425e881 724 Pfam PF13307 Helicase C-terminal domain 557 716 6.8E-27 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Alide_0016 315e04124ba421e2977de7d22425e881 724 SMART SM00491 570 703 1.1E-21 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Alide_0016 315e04124ba421e2977de7d22425e881 724 SUPERFAMILY SSF52540 60 697 2.97E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0016 315e04124ba421e2977de7d22425e881 724 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 33 722 35.286 T 12-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 Gene3D G3DSA:3.40.50.300 306 579 2.8E-106 T 12-10-2018 Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 SMART SM00382 330 453 6.6E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 397 411 - T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 Pfam PF00437 Type II/IV secretion system protein 203 469 6.1E-88 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 Gene3D G3DSA:3.30.450.90 168 302 1.0E-47 T 12-10-2018 Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 52 151 1.4E-16 T 12-10-2018 IPR007831 General secretory system II, protein E, N-terminal Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 19 578 3.0E-246 T 12-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 SUPERFAMILY SSF52540 182 576 2.62E-97 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 SUPERFAMILY SSF160246 13 150 2.62E-31 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Alide_0918 d774b53e7bad30ffce1978ab07e724ca 579 Gene3D G3DSA:3.30.300.160 73 151 1.4E-7 T 12-10-2018 Alide_1580 86437329515602479ef101d01132d346 444 Pfam PF00589 Phage integrase family 249 402 1.1E-12 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1580 86437329515602479ef101d01132d346 444 Gene3D G3DSA:3.30.160.390 6 115 3.7E-9 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Alide_1580 86437329515602479ef101d01132d346 444 SUPERFAMILY SSF56349 175 409 1.09E-35 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_1580 86437329515602479ef101d01132d346 444 Pfam PF13356 Arm DNA-binding domain 23 94 1.7E-10 T 12-10-2018 IPR025166 Integrase, DNA-binding domain Alide_1580 86437329515602479ef101d01132d346 444 Gene3D G3DSA:1.10.443.10 244 415 9.2E-25 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 266 1.4E-41 T 12-10-2018 Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 4.3E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 4.3E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 4.3E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 229 249 4.3E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 4.3E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 4.3E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 Gene3D G3DSA:3.40.50.720 1 268 1.3E-61 T 12-10-2018 Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 SUPERFAMILY SSF51735 8 267 7.18E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2952 a2e2a48bad09001a27ce3f3c6ce7c4bb 268 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 207 0.0022 T 12-10-2018 Alide_4456 493cd6bb24385a4939b0a4c53ab56339 192 SMART SM00857 1 135 1.7E-46 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_4456 493cd6bb24385a4939b0a4c53ab56339 192 SUPERFAMILY SSF46689 137 177 9.86E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4456 493cd6bb24385a4939b0a4c53ab56339 192 SUPERFAMILY SSF53041 1 135 2.09E-39 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Alide_4456 493cd6bb24385a4939b0a4c53ab56339 192 Pfam PF00239 Resolvase, N terminal domain 1 134 1.4E-41 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_4456 493cd6bb24385a4939b0a4c53ab56339 192 Gene3D G3DSA:3.40.50.1390 1 124 3.6E-40 T 12-10-2018 Alide_4456 493cd6bb24385a4939b0a4c53ab56339 192 ProSitePatterns PS00398 Site-specific recombinases signature 2. 54 66 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Alide_3895 c0935a39d7829d37fee73cd8b7a3be7f 291 Gene3D G3DSA:3.10.310.10 130 283 1.2E-77 T 12-10-2018 Alide_3895 c0935a39d7829d37fee73cd8b7a3be7f 291 PIRSF PIRSF016184 1 291 2.0E-63 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Alide_3895 c0935a39d7829d37fee73cd8b7a3be7f 291 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 290 3.4E-52 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Alide_3895 c0935a39d7829d37fee73cd8b7a3be7f 291 SUPERFAMILY SSF54506 4 290 7.85E-68 T 12-10-2018 Alide_3895 c0935a39d7829d37fee73cd8b7a3be7f 291 Pfam PF02567 Phenazine biosynthesis-like protein 9 287 8.3E-50 T 12-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Alide_3895 c0935a39d7829d37fee73cd8b7a3be7f 291 Gene3D G3DSA:3.10.310.10 8 285 1.2E-77 T 12-10-2018 Alide_3204 c94d6a749163002edf4a868fa392d989 408 Pfam PF02515 CoA-transferase family III 6 384 8.3E-132 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_3204 c94d6a749163002edf4a868fa392d989 408 Gene3D G3DSA:3.30.1540.10 244 335 7.8E-142 T 12-10-2018 Alide_3204 c94d6a749163002edf4a868fa392d989 408 Gene3D G3DSA:3.40.50.10540 5 402 7.8E-142 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3204 c94d6a749163002edf4a868fa392d989 408 SUPERFAMILY SSF89796 4 408 4.58E-142 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2566 890bbaec988b8e6bb8c22e4fce4d83b9 431 SUPERFAMILY SSF54826 6 143 5.02E-20 T 12-10-2018 Alide_2566 890bbaec988b8e6bb8c22e4fce4d83b9 431 Gene3D G3DSA:3.30.390.10 7 424 9.6E-166 T 12-10-2018 IPR029017 Enolase-like, N-terminal Alide_2566 890bbaec988b8e6bb8c22e4fce4d83b9 431 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 37 143 2.4E-4 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Alide_2566 890bbaec988b8e6bb8c22e4fce4d83b9 431 SMART SM00922 179 273 6.0E-22 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Alide_2566 890bbaec988b8e6bb8c22e4fce4d83b9 431 Gene3D G3DSA:3.20.20.120 143 387 9.6E-166 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_2566 890bbaec988b8e6bb8c22e4fce4d83b9 431 SUPERFAMILY SSF51604 143 403 2.0E-65 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_2566 890bbaec988b8e6bb8c22e4fce4d83b9 431 Pfam PF13378 Enolase C-terminal domain-like 182 394 3.9E-44 T 12-10-2018 IPR029065 Enolase C-terminal domain-like Alide_3368 90391b890bb1d3142144c645bc3bde2c 322 Gene3D G3DSA:3.40.190.150 28 312 1.3E-98 T 12-10-2018 Alide_3368 90391b890bb1d3142144c645bc3bde2c 322 SUPERFAMILY SSF53850 30 277 6.88E-5 T 12-10-2018 Alide_3368 90391b890bb1d3142144c645bc3bde2c 322 PIRSF PIRSF017082 4 321 1.4E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3368 90391b890bb1d3142144c645bc3bde2c 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 318 8.1E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3368 90391b890bb1d3142144c645bc3bde2c 322 Gene3D G3DSA:3.40.190.10 124 247 1.3E-98 T 12-10-2018 Alide_3658 b590e122e6785704f98d111545c7ab24 567 Gene3D G3DSA:3.30.565.10 415 556 5.4E-23 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3658 b590e122e6785704f98d111545c7ab24 567 Pfam PF13188 PAS domain 206 242 1.1E-4 T 12-10-2018 IPR000014 PAS domain Alide_3658 b590e122e6785704f98d111545c7ab24 567 SUPERFAMILY SSF55874 415 530 1.7E-22 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3658 b590e122e6785704f98d111545c7ab24 567 SUPERFAMILY SSF47384 323 392 4.32E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_3658 b590e122e6785704f98d111545c7ab24 567 Gene3D G3DSA:1.10.287.130 315 391 1.5E-16 T 12-10-2018 Alide_3658 b590e122e6785704f98d111545c7ab24 567 SMART SM00388 328 393 5.8E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3658 b590e122e6785704f98d111545c7ab24 567 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 439 536 4.1E-11 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3658 b590e122e6785704f98d111545c7ab24 567 Pfam PF00512 His Kinase A (phospho-acceptor) domain 328 392 1.9E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3658 b590e122e6785704f98d111545c7ab24 567 Gene3D G3DSA:3.30.450.20 189 314 1.7E-5 T 12-10-2018 Alide_3658 b590e122e6785704f98d111545c7ab24 567 SUPERFAMILY SSF55785 191 313 6.09E-6 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3658 b590e122e6785704f98d111545c7ab24 567 SMART SM00387 438 553 3.8E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 9.0E-43 T 12-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 282 37.989 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 SUPERFAMILY SSF53223 1 121 2.88E-42 T 12-10-2018 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 SUPERFAMILY SSF51735 122 280 7.08E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 Gene3D G3DSA:3.40.50.720 6 259 6.2E-114 T 12-10-2018 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 Gene3D G3DSA:3.40.50.10860 8 276 6.2E-114 T 12-10-2018 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 12-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.9E-85 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.9E-85 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.9E-85 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.9E-85 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.9E-85 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.9E-85 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.9E-85 T 12-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 1.6E-67 T 12-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_2223 6c4b651c81c8c42bf7023e6a9405e2ce 282 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 12-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Alide_0161 0513637ef5e3880811def1a0c7b9dca2 393 Gene3D G3DSA:3.30.1540.10 230 323 2.8E-122 T 12-10-2018 Alide_0161 0513637ef5e3880811def1a0c7b9dca2 393 Pfam PF02515 CoA-transferase family III 5 370 2.9E-112 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0161 0513637ef5e3880811def1a0c7b9dca2 393 SUPERFAMILY SSF89796 3 390 8.89E-126 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0161 0513637ef5e3880811def1a0c7b9dca2 393 Gene3D G3DSA:3.40.50.10540 4 387 2.8E-122 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2998 5bababc1d72490aa8e144d4db73e532b 142 Pfam PF09842 Predicted membrane protein (DUF2069) 22 124 6.0E-37 T 12-10-2018 IPR018643 Protein of unknown function DUF2069, membrane Alide_3277 93076bfd98d8e5ecc9efdaad79680126 371 SUPERFAMILY SSF47203 231 369 1.47E-32 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3277 93076bfd98d8e5ecc9efdaad79680126 371 SUPERFAMILY SSF56645 1 208 9.82E-35 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3277 93076bfd98d8e5ecc9efdaad79680126 371 PIRSF PIRSF016578 2 188 1.4E-8 T 12-10-2018 Alide_3277 93076bfd98d8e5ecc9efdaad79680126 371 PIRSF PIRSF016578 198 365 1.0E-6 T 12-10-2018 Alide_3277 93076bfd98d8e5ecc9efdaad79680126 371 Gene3D G3DSA:1.10.540.10 1 118 4.7E-26 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3277 93076bfd98d8e5ecc9efdaad79680126 371 Gene3D G3DSA:2.40.110.10 129 225 2.2E-16 T 12-10-2018 Alide_3277 93076bfd98d8e5ecc9efdaad79680126 371 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 6.3E-14 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3277 93076bfd98d8e5ecc9efdaad79680126 371 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 367 3.6E-24 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3277 93076bfd98d8e5ecc9efdaad79680126 371 Gene3D G3DSA:1.20.140.10 233 370 1.2E-32 T 12-10-2018 Alide_0089 f971541ced2b9fac8c96c138c8cac81b 691 Gene3D G3DSA:3.40.50.12780 61 508 3.2E-53 T 12-10-2018 Alide_0089 f971541ced2b9fac8c96c138c8cac81b 691 Pfam PF00501 AMP-binding enzyme 94 484 9.1E-42 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0089 f971541ced2b9fac8c96c138c8cac81b 691 SUPERFAMILY SSF56801 18 678 2.62E-109 T 12-10-2018 Alide_0089 f971541ced2b9fac8c96c138c8cac81b 691 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 12 684 5.2E-211 T 12-10-2018 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16|Reactome: R-HSA-77111 Alide_0089 f971541ced2b9fac8c96c138c8cac81b 691 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 31 84 1.5E-11 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Alide_0089 f971541ced2b9fac8c96c138c8cac81b 691 Gene3D G3DSA:3.30.300.30 555 674 2.9E-11 T 12-10-2018 Alide_0089 f971541ced2b9fac8c96c138c8cac81b 691 ProSitePatterns PS00455 Putative AMP-binding domain signature. 266 277 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_2570 1b960f129da24c627c1b66c1a69d846c 317 SUPERFAMILY SSF53850 103 278 4.78E-12 T 12-10-2018 Alide_2570 1b960f129da24c627c1b66c1a69d846c 317 Gene3D G3DSA:3.40.190.150 21 307 4.1E-114 T 12-10-2018 Alide_2570 1b960f129da24c627c1b66c1a69d846c 317 PIRSF PIRSF017082 1 317 3.1E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2570 1b960f129da24c627c1b66c1a69d846c 317 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 40 313 1.2E-93 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2570 1b960f129da24c627c1b66c1a69d846c 317 Gene3D G3DSA:3.40.190.10 119 242 4.1E-114 T 12-10-2018 Alide_4450 b1f434d016ba549b28940efdf9d0d50a 142 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 24 137 2.8E-20 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_4450 b1f434d016ba549b28940efdf9d0d50a 142 Gene3D G3DSA:3.10.129.10 1 141 5.1E-38 T 12-10-2018 Alide_4450 b1f434d016ba549b28940efdf9d0d50a 142 Pfam PF03061 Thioesterase superfamily 53 124 2.7E-11 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_4450 b1f434d016ba549b28940efdf9d0d50a 142 SUPERFAMILY SSF54637 22 140 1.98E-24 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2935 9bbf968b4359772e46e23a3abed2f2ee 645 Gene3D G3DSA:3.40.50.12780 77 516 1.4E-84 T 12-10-2018 Alide_2935 9bbf968b4359772e46e23a3abed2f2ee 645 Gene3D G3DSA:3.30.300.30 518 642 4.0E-23 T 12-10-2018 Alide_2935 9bbf968b4359772e46e23a3abed2f2ee 645 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 610 2.6E-18 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_2935 9bbf968b4359772e46e23a3abed2f2ee 645 Pfam PF00501 AMP-binding enzyme 97 522 3.8E-81 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_2935 9bbf968b4359772e46e23a3abed2f2ee 645 SUPERFAMILY SSF56801 23 642 7.46E-142 T 12-10-2018 Alide_2935 9bbf968b4359772e46e23a3abed2f2ee 645 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 31 83 3.8E-11 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Alide_2935 9bbf968b4359772e46e23a3abed2f2ee 645 ProSitePatterns PS00455 Putative AMP-binding domain signature. 265 276 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 287 2.6E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 SMART SM00387 337 450 1.8E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 Gene3D G3DSA:3.30.565.10 296 454 6.4E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 SUPERFAMILY SSF55874 278 446 1.02E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 1.3E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 1.3E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 SMART SM00388 223 288 5.8E-13 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 339 446 4.3E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 Gene3D G3DSA:1.10.287.130 173 289 2.3E-21 T 12-10-2018 Alide_3617 3c4b4f133176f1df05b7cbc2edfa43c4 458 SUPERFAMILY SSF47384 206 287 3.14E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_2740 8b552e6dc78f252719601f637904abc1 619 Gene3D G3DSA:2.60.40.420 48 176 5.8E-40 T 12-10-2018 IPR008972 Cupredoxin Alide_2740 8b552e6dc78f252719601f637904abc1 619 ProSitePatterns PS00079 Multicopper oxidases signature 1. 596 616 - T 12-10-2018 IPR033138 Multicopper oxidases, conserved site Alide_2740 8b552e6dc78f252719601f637904abc1 619 Pfam PF07732 Multicopper oxidase 68 178 8.1E-40 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 Alide_2740 8b552e6dc78f252719601f637904abc1 619 Gene3D G3DSA:2.60.40.420 495 619 3.9E-27 T 12-10-2018 IPR008972 Cupredoxin Alide_2740 8b552e6dc78f252719601f637904abc1 619 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 14 618 3.2E-266 T 12-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 Alide_2740 8b552e6dc78f252719601f637904abc1 619 Gene3D G3DSA:2.60.40.420 185 387 5.2E-37 T 12-10-2018 IPR008972 Cupredoxin Alide_2740 8b552e6dc78f252719601f637904abc1 619 SUPERFAMILY SSF49503 183 388 8.83E-47 T 12-10-2018 IPR008972 Cupredoxin Alide_2740 8b552e6dc78f252719601f637904abc1 619 SUPERFAMILY SSF49503 458 618 3.82E-32 T 12-10-2018 IPR008972 Cupredoxin Alide_2740 8b552e6dc78f252719601f637904abc1 619 Pfam PF07731 Multicopper oxidase 505 618 1.1E-21 T 12-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 Alide_2740 8b552e6dc78f252719601f637904abc1 619 ProSitePatterns PS00080 Multicopper oxidases signature 2. 601 612 - T 12-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 Alide_2740 8b552e6dc78f252719601f637904abc1 619 SUPERFAMILY SSF49503 53 199 1.15E-41 T 12-10-2018 IPR008972 Cupredoxin Alide_2740 8b552e6dc78f252719601f637904abc1 619 ProSitePatterns PS00079 Multicopper oxidases signature 1. 152 172 - T 12-10-2018 IPR033138 Multicopper oxidases, conserved site Alide_2740 8b552e6dc78f252719601f637904abc1 619 Pfam PF00394 Multicopper oxidase 187 363 7.0E-27 T 12-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 Pfam PF00152 tRNA synthetases class II (D, K and N) 170 511 7.4E-81 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 SUPERFAMILY SSF50249 12 163 1.44E-38 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 SUPERFAMILY SSF55681 170 512 7.47E-112 T 12-10-2018 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 Gene3D G3DSA:3.30.930.10 166 515 4.4E-122 T 12-10-2018 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 20 514 43.27 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 PRINTS PR00982 Lysyl-tRNA synthetase signature 270 287 5.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 PRINTS PR00982 Lysyl-tRNA synthetase signature 207 217 5.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 PRINTS PR00982 Lysyl-tRNA synthetase signature 223 239 5.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 PRINTS PR00982 Lysyl-tRNA synthetase signature 396 412 5.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 PRINTS PR00982 Lysyl-tRNA synthetase signature 252 265 5.5E-39 T 12-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 Gene3D G3DSA:2.40.50.140 14 162 4.8E-39 T 12-10-2018 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 513 5.2E-195 T 12-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Alide_3160 bf62ebb505f4378f9da78bc6c74851ad 515 Pfam PF01336 OB-fold nucleic acid binding domain 72 154 1.1E-14 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Alide_3741 3350d3968a69465e1b6182e73a24ee01 300 SUPERFAMILY SSF53850 86 292 7.67E-34 T 12-10-2018 Alide_3741 3350d3968a69465e1b6182e73a24ee01 300 Gene3D G3DSA:3.40.190.10 164 263 3.2E-33 T 12-10-2018 Alide_3741 3350d3968a69465e1b6182e73a24ee01 300 Pfam PF03466 LysR substrate binding domain 85 288 3.2E-36 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3741 3350d3968a69465e1b6182e73a24ee01 300 Gene3D G3DSA:1.10.10.10 1 85 9.6E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3741 3350d3968a69465e1b6182e73a24ee01 300 Gene3D G3DSA:3.40.190.10 89 274 3.2E-33 T 12-10-2018 Alide_3741 3350d3968a69465e1b6182e73a24ee01 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 9.6E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3741 3350d3968a69465e1b6182e73a24ee01 300 SUPERFAMILY SSF46785 3 109 2.14E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0054 36bd979c0dfcda32409d32f8d31f3170 305 Gene3D G3DSA:3.90.1530.30 50 117 7.6E-27 T 12-10-2018 Alide_0054 36bd979c0dfcda32409d32f8d31f3170 305 SMART SM00470 37 131 1.9E-32 T 12-10-2018 IPR003115 ParB/Sulfiredoxin Alide_0054 36bd979c0dfcda32409d32f8d31f3170 305 Pfam PF02195 ParB-like nuclease domain 40 131 4.9E-23 T 12-10-2018 IPR003115 ParB/Sulfiredoxin Alide_0054 36bd979c0dfcda32409d32f8d31f3170 305 Gene3D G3DSA:1.10.10.2830 118 231 1.5E-36 T 12-10-2018 Alide_0054 36bd979c0dfcda32409d32f8d31f3170 305 SUPERFAMILY SSF109709 124 231 3.14E-33 T 12-10-2018 Alide_0054 36bd979c0dfcda32409d32f8d31f3170 305 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 38 207 5.5E-55 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Alide_0054 36bd979c0dfcda32409d32f8d31f3170 305 SUPERFAMILY SSF110849 39 133 1.18E-27 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Alide_0059 8308bb817f1eba1c489180624f07cd83 269 Pfam PF00924 Mechanosensitive ion channel 63 255 2.7E-35 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Alide_0059 8308bb817f1eba1c489180624f07cd83 269 SUPERFAMILY SSF82689 173 260 8.11E-15 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Alide_0059 8308bb817f1eba1c489180624f07cd83 269 Gene3D G3DSA:3.30.70.100 172 261 5.5E-7 T 12-10-2018 Alide_0059 8308bb817f1eba1c489180624f07cd83 269 SUPERFAMILY SSF50182 105 170 9.15E-16 T 12-10-2018 IPR010920 LSM domain superfamily Alide_0059 8308bb817f1eba1c489180624f07cd83 269 Gene3D G3DSA:2.30.30.60 120 169 2.0E-17 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Alide_0059 8308bb817f1eba1c489180624f07cd83 269 SUPERFAMILY SSF82861 18 101 3.79E-12 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Alide_3034 c7c011bfda73a5252e3502420f8d6a56 382 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 6 381 27.783 T 12-10-2018 IPR017687 Outer membrane protein assembly factor BamB Alide_3034 c7c011bfda73a5252e3502420f8d6a56 382 Pfam PF13360 PQQ-like domain 80 307 3.4E-52 T 12-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Alide_3034 c7c011bfda73a5252e3502420f8d6a56 382 SUPERFAMILY SSF50998 36 379 1.35E-52 T 12-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Alide_3034 c7c011bfda73a5252e3502420f8d6a56 382 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 14 379 1.6E-93 T 12-10-2018 IPR017687 Outer membrane protein assembly factor BamB Alide_3034 c7c011bfda73a5252e3502420f8d6a56 382 Gene3D G3DSA:2.130.10.10 31 380 4.9E-66 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Alide_3034 c7c011bfda73a5252e3502420f8d6a56 382 SMART SM00564 145 176 0.041 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Alide_3034 c7c011bfda73a5252e3502420f8d6a56 382 SMART SM00564 66 98 2.2 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Alide_3034 c7c011bfda73a5252e3502420f8d6a56 382 SMART SM00564 181 220 80.0 T 12-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 ProSitePatterns PS00211 ABC transporters family signature. 176 190 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 SMART SM00382 48 253 7.6E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 SMART SM00382 357 549 1.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 SUPERFAMILY SSF52540 321 571 1.63E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 Pfam PF00005 ABC transporter 40 203 1.1E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 Pfam PF00005 ABC transporter 349 498 2.9E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 SUPERFAMILY SSF52540 20 275 2.89E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 549 600 5.0E-12 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 Gene3D G3DSA:3.40.50.300 17 295 2.0E-80 T 12-10-2018 Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 Gene3D G3DSA:3.40.50.300 319 623 2.2E-86 T 12-10-2018 Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 551 597 2.9E-9 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 255 285 3.7E-6 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_4413 073e159ab9f4aac384fb3f8e175cc734 624 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 SUPERFAMILY SSF53659 436 764 2.47E-85 T 12-10-2018 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 PIRSF PIRSF036684 6 769 0.0 T 12-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 Gene3D G3DSA:3.40.50.10950 454 761 2.8E-89 T 12-10-2018 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 Pfam PF03949 Malic enzyme, NAD binding domain 172 366 1.7E-22 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 SUPERFAMILY SSF53223 17 168 5.68E-53 T 12-10-2018 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 SMART SM01274 25 158 3.6E-79 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 Pfam PF00390 Malic enzyme, N-terminal domain 26 157 1.6E-27 T 12-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 Gene3D G3DSA:3.40.50.10380 5 167 1.0E-68 T 12-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 Pfam PF01515 Phosphate acetyl/butaryl transferase 436 761 6.1E-87 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 SMART SM00919 170 407 1.9E-141 T 12-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 Gene3D G3DSA:3.40.50.10750 582 737 2.8E-89 T 12-10-2018 Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 SUPERFAMILY SSF51735 170 448 1.04E-84 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3112 0c5997e7a2f0f2b5c326892abb3b2a93 769 Gene3D G3DSA:3.40.50.720 168 453 3.4E-81 T 12-10-2018 Alide_0896 7aada30f3659f0eeb368252b804e506a 82 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 75 22.89 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Alide_0896 7aada30f3659f0eeb368252b804e506a 82 Pfam PF02416 mttA/Hcf106 family 5 55 3.5E-14 T 12-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 Alide_0896 7aada30f3659f0eeb368252b804e506a 82 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 1.0E-22 T 12-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 SUPERFAMILY SSF51230 593 664 3.14E-17 T 12-10-2018 IPR011053 Single hybrid motif Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 5.4E-31 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 SUPERFAMILY SSF52440 1 112 4.17E-43 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 Pfam PF00364 Biotin-requiring enzyme 601 664 3.0E-14 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 Gene3D G3DSA:2.40.50.100 600 667 1.5E-17 T 12-10-2018 Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.3E-39 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 SUPERFAMILY SSF51246 331 444 8.37E-34 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 SUPERFAMILY SSF56059 83 327 7.25E-59 T 12-10-2018 Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 320 1.5E-58 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 Gene3D G3DSA:3.30.470.130 1 445 7.2E-166 T 12-10-2018 Alide_2887 fa2dca56b5d0de193ecc52222ceda2b7 668 SMART SM00878 336 440 5.2E-45 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_2459 96099e1d3ba478e0ac1cded44a11479e 110 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.076 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Alide_2459 96099e1d3ba478e0ac1cded44a11479e 110 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 104 1.9E-33 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Alide_2459 96099e1d3ba478e0ac1cded44a11479e 110 SUPERFAMILY SSF82607 11 104 6.41E-34 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Alide_2459 96099e1d3ba478e0ac1cded44a11479e 110 Pfam PF02575 YbaB/EbfC DNA-binding family 11 99 5.2E-35 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Alide_2459 96099e1d3ba478e0ac1cded44a11479e 110 PIRSF PIRSF004555 3 110 1.8E-37 T 12-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Alide_2459 96099e1d3ba478e0ac1cded44a11479e 110 Gene3D G3DSA:3.30.1310.10 1 110 1.0E-42 T 12-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Alide_2746 5bc85452b34f391b30d15301eb17db41 107 SUPERFAMILY SSF46689 5 94 5.55E-15 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2746 5bc85452b34f391b30d15301eb17db41 107 Pfam PF01527 Transposase 4 76 7.3E-7 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_2746 5bc85452b34f391b30d15301eb17db41 107 Gene3D G3DSA:1.10.10.60 10 91 1.7E-5 T 12-10-2018 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 SMART SM00047 142 301 1.0E-32 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 Pfam PF10135 Rod binding protein 61 107 2.2E-11 T 12-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 Gene3D G3DSA:1.10.530.10 152 290 2.1E-47 T 12-10-2018 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 19 295 1.1E-79 T 12-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 PRINTS PR01002 Flagellar protein FlgJ signature 171 189 7.1E-35 T 12-10-2018 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 PRINTS PR01002 Flagellar protein FlgJ signature 147 170 7.1E-35 T 12-10-2018 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 PRINTS PR01002 Flagellar protein FlgJ signature 235 256 7.1E-35 T 12-10-2018 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 PRINTS PR01002 Flagellar protein FlgJ signature 191 212 7.1E-35 T 12-10-2018 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 PRINTS PR01002 Flagellar protein FlgJ signature 278 296 7.1E-35 T 12-10-2018 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 PRINTS PR01002 Flagellar protein FlgJ signature 213 234 7.1E-35 T 12-10-2018 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 PRINTS PR01002 Flagellar protein FlgJ signature 13 33 7.1E-35 T 12-10-2018 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 158 295 2.2E-21 T 12-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Alide_3886 ce3d5b14e274f3456a47ef083f2fe7c5 312 Gene3D G3DSA:2.10.70.40 186 238 2.1E-47 T 12-10-2018 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 SMART SM00387 292 403 8.5E-33 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 Pfam PF00512 His Kinase A (phospho-acceptor) domain 193 253 3.3E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 SUPERFAMILY SSF55874 275 400 3.01E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 SMART SM00304 138 190 3.5E-12 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 SUPERFAMILY SSF47384 174 253 4.71E-14 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 Pfam PF00672 HAMP domain 138 186 7.2E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 294 402 2.6E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 Gene3D G3DSA:1.10.287.130 143 253 8.6E-28 T 12-10-2018 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 SUPERFAMILY SSF158472 138 188 6.28E-7 T 12-10-2018 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 SMART SM00388 191 253 9.1E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 341 7.0E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 355 7.0E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 PRINTS PR00344 Bacterial sensor protein C-terminal signature 361 379 7.0E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 400 7.0E-15 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0313 e52d2fbce5d17250410bf97fad1f7ad5 403 Gene3D G3DSA:3.30.565.10 261 403 1.3E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0040 b80245e3f2173344f96f9b3d198fded5 417 Gene3D G3DSA:1.10.287.470 134 205 1.8E-78 T 12-10-2018 Alide_0040 b80245e3f2173344f96f9b3d198fded5 417 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 100 391 5.0E-44 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_0040 b80245e3f2173344f96f9b3d198fded5 417 Gene3D G3DSA:2.40.30.170 86 325 1.8E-78 T 12-10-2018 Alide_0040 b80245e3f2173344f96f9b3d198fded5 417 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 87 319 7.2E-42 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_0040 b80245e3f2173344f96f9b3d198fded5 417 Gene3D G3DSA:2.40.420.20 83 384 1.8E-78 T 12-10-2018 Alide_0040 b80245e3f2173344f96f9b3d198fded5 417 Gene3D G3DSA:2.40.50.100 100 245 1.8E-78 T 12-10-2018 Alide_0040 b80245e3f2173344f96f9b3d198fded5 417 SUPERFAMILY SSF111369 99 324 1.28E-18 T 12-10-2018 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 ProDom PD485437 REGULATOR TRANSCRIPTIONAL FIS-TYPE HELIX-TURN-HELIX ACTIVATOR PLASMID FAMILY PHENOL-DEGRADATIVE FIS SIGMA-54 10 138 5.0E-41 T 12-10-2018 IPR010523 Activator of aromatic catabolism Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 Gene3D G3DSA:3.40.50.300 235 410 4.3E-64 T 12-10-2018 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 326 341 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 264 277 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 Gene3D G3DSA:3.30.1380.20 100 189 1.6E-7 T 12-10-2018 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 Pfam PF00158 Sigma-54 interaction domain 240 406 6.6E-69 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 SMART SM00382 260 403 7.7E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 SMART SM00989 123 185 2.9E-23 T 12-10-2018 IPR004096 4-vinyl reductase, 4VR Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 Gene3D G3DSA:1.10.8.60 411 490 1.5E-21 T 12-10-2018 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 Pfam PF06505 Activator of aromatic catabolism 12 112 1.0E-36 T 12-10-2018 IPR010523 Activator of aromatic catabolism Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 Pfam PF02954 Bacterial regulatory protein, Fis family 527 564 8.1E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 531 548 2.0E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 548 568 2.0E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 SUPERFAMILY SSF46689 453 564 4.12E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 Gene3D G3DSA:1.10.10.60 515 567 1.5E-8 T 12-10-2018 Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 Pfam PF02830 V4R domain 124 185 1.5E-17 T 12-10-2018 IPR004096 4-vinyl reductase, 4VR Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 SUPERFAMILY SSF111126 41 182 4.03E-11 T 12-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily Alide_0322 9eaf5eb3f780c640ba9bcc7fc6ddd92f 568 SUPERFAMILY SSF52540 240 473 1.52E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 SUPERFAMILY SSF54373 292 478 2.65E-44 T 12-10-2018 Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 Pfam PF05199 GMC oxidoreductase 392 530 1.6E-42 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 Gene3D G3DSA:1.10.1220.110 97 151 1.0E-170 T 12-10-2018 Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 Gene3D G3DSA:3.50.50.60 5 534 1.0E-170 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 PIRSF PIRSF000137 1 536 6.6E-149 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 Gene3D G3DSA:4.10.450.10 38 197 1.0E-170 T 12-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 Pfam PF00732 GMC oxidoreductase 5 297 1.0E-76 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 Gene3D G3DSA:3.30.410.40 152 475 1.0E-170 T 12-10-2018 Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 256 270 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_3809 bf0c1a85eb50e65b1bd07fa4e38f2170 536 SUPERFAMILY SSF51905 3 535 9.81E-80 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3829 acb152cacc66e5f0fb804058eac7de30 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 2.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3829 acb152cacc66e5f0fb804058eac7de30 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3829 acb152cacc66e5f0fb804058eac7de30 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 2.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3829 acb152cacc66e5f0fb804058eac7de30 222 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 2.8E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3829 acb152cacc66e5f0fb804058eac7de30 222 Pfam PF00106 short chain dehydrogenase 3 181 6.3E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3829 acb152cacc66e5f0fb804058eac7de30 222 Gene3D G3DSA:3.40.50.720 1 222 1.8E-50 T 12-10-2018 Alide_3829 acb152cacc66e5f0fb804058eac7de30 222 SUPERFAMILY SSF51735 1 217 2.68E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 TIGRFAM TIGR02051 MerR: Hg(II)-responsive transcriptional regulator 9 132 2.7E-51 T 12-10-2018 IPR011794 Hg(II)-responsive transcriptional regulator GO:0003677|GO:0006355|GO:0045340|GO:0046689 Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 SUPERFAMILY SSF46955 8 130 1.21E-29 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 ProSitePatterns PS00552 MerR-type HTH domain signature. 11 33 - T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 1.2E-24 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 1.2E-24 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 1.2E-24 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 Gene3D G3DSA:1.10.1660.10 1 131 1.5E-31 T 12-10-2018 Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 Pfam PF00376 MerR family regulatory protein 9 46 1.3E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 Pfam PF09278 MerR, DNA binding 51 112 1.1E-17 T 12-10-2018 IPR015358 Transcription regulator MerR, DNA binding Alide_1829 9dc265b7fac0025f7db6fbac72cf3547 135 SMART SM00422 8 77 3.5E-30 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_2855 79a1ed13ac8f0afebafbff0b2cd7ce63 470 Pfam PF00753 Metallo-beta-lactamase superfamily 11 197 1.8E-13 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_2855 79a1ed13ac8f0afebafbff0b2cd7ce63 470 Pfam PF10996 Beta-Casp domain 252 377 1.2E-26 T 12-10-2018 IPR022712 Beta-Casp domain Alide_2855 79a1ed13ac8f0afebafbff0b2cd7ce63 470 SMART SM00849 13 217 8.1E-18 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_2855 79a1ed13ac8f0afebafbff0b2cd7ce63 470 Gene3D G3DSA:3.60.15.10 6 438 2.2E-146 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_2855 79a1ed13ac8f0afebafbff0b2cd7ce63 470 Gene3D G3DSA:3.40.50.10890 219 403 2.2E-146 T 12-10-2018 Alide_2855 79a1ed13ac8f0afebafbff0b2cd7ce63 470 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 391 454 6.3E-16 T 12-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain Alide_2855 79a1ed13ac8f0afebafbff0b2cd7ce63 470 SMART SM01027 252 377 8.0E-58 T 12-10-2018 IPR022712 Beta-Casp domain Alide_2855 79a1ed13ac8f0afebafbff0b2cd7ce63 470 SUPERFAMILY SSF56281 1 460 1.44E-134 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_3791 da802cc6824374eef7128ebbafbf37bf 604 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 460 598 2.5E-39 T 12-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding Alide_3791 da802cc6824374eef7128ebbafbf37bf 604 SUPERFAMILY SSF51206 10 133 5.11E-13 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_3791 da802cc6824374eef7128ebbafbf37bf 604 Gene3D G3DSA:2.60.120.10 8 137 3.0E-10 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_3791 da802cc6824374eef7128ebbafbf37bf 604 Pfam PF03445 Putative nucleotidyltransferase DUF294 290 420 3.3E-38 T 12-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 Alide_3791 da802cc6824374eef7128ebbafbf37bf 604 Gene3D G3DSA:3.10.580.10 138 282 9.8E-20 T 12-10-2018 Alide_3791 da802cc6824374eef7128ebbafbf37bf 604 SMART SM00116 217 265 1.2E-6 T 12-10-2018 IPR000644 CBS domain Alide_3791 da802cc6824374eef7128ebbafbf37bf 604 Pfam PF00571 CBS domain 210 265 1.1E-8 T 12-10-2018 IPR000644 CBS domain Alide_3791 da802cc6824374eef7128ebbafbf37bf 604 SUPERFAMILY SSF54631 144 267 2.0E-18 T 12-10-2018 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 4 320 5.5E-153 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 SUPERFAMILY SSF52096 6 317 7.85E-103 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 6 149 4.5E-67 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 6 317 50.268 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 198 207 2.0E-45 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 154 167 2.0E-45 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 135 151 2.0E-45 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 170 183 2.0E-45 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 114 132 2.0E-45 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 89 100 2.0E-45 T 12-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_2121 47a436d2b6173e72c72808ae52af6b32 325 Gene3D G3DSA:3.90.226.10 1 319 1.4E-122 T 12-10-2018 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 Gene3D G3DSA:1.25.40.10 113 190 7.4E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 ProSitePatterns PS00194 Thioredoxin family active site. 23 41 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 Pfam PF14561 Tetratricopeptide repeat 208 299 7.7E-18 T 12-10-2018 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 Pfam PF00085 Thioredoxin 4 105 7.6E-28 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 Pfam PF14559 Tetratricopeptide repeat 124 189 6.7E-10 T 12-10-2018 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 TIGRFAM TIGR01068 thioredoxin: thioredoxin 15 105 2.3E-31 T 12-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 PRINTS PR00421 Thioredoxin family signature 22 30 2.8E-6 T 12-10-2018 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 PRINTS PR00421 Thioredoxin family signature 30 39 2.8E-6 T 12-10-2018 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 PRINTS PR00421 Thioredoxin family signature 70 81 2.8E-6 T 12-10-2018 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 SUPERFAMILY SSF52833 2 110 5.85E-35 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 Gene3D G3DSA:3.40.30.10 1 111 7.5E-32 T 12-10-2018 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 Gene3D G3DSA:1.25.40.10 205 300 1.1E-25 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_4127 1cbb13991bee374c12523a831be7bfc8 302 SUPERFAMILY SSF48452 123 251 4.98E-9 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_2945 9b6664538e66b2ec596e0798232a8422 315 Gene3D G3DSA:3.40.190.150 27 310 2.4E-82 T 12-10-2018 Alide_2945 9b6664538e66b2ec596e0798232a8422 315 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 294 2.3E-49 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2945 9b6664538e66b2ec596e0798232a8422 315 SUPERFAMILY SSF53850 118 277 9.77E-6 T 12-10-2018 Alide_2945 9b6664538e66b2ec596e0798232a8422 315 Gene3D G3DSA:3.40.190.10 123 246 2.4E-82 T 12-10-2018 Alide_2945 9b6664538e66b2ec596e0798232a8422 315 PIRSF PIRSF017082 1 315 7.8E-66 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3065 14341597874a95a5050eb68fdd1116db 123 Pfam PF13239 2TM domain 38 111 1.2E-17 T 12-10-2018 IPR025698 2TM domain Alide_2314 b130c9fbb290e599b08c77e819327da1 201 Pfam PF08242 Methyltransferase domain 53 132 1.1E-7 T 12-10-2018 IPR013217 Methyltransferase type 12 Alide_2314 b130c9fbb290e599b08c77e819327da1 201 SUPERFAMILY SSF53335 6 165 4.4E-20 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2314 b130c9fbb290e599b08c77e819327da1 201 Gene3D G3DSA:3.40.50.150 10 174 3.0E-16 T 12-10-2018 Alide_3520 345ff48239bd7a2989683715c2b6bb42 199 Gene3D G3DSA:3.40.630.30 1 192 3.3E-42 T 12-10-2018 Alide_3520 345ff48239bd7a2989683715c2b6bb42 199 SUPERFAMILY SSF55729 5 177 4.08E-36 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_3520 345ff48239bd7a2989683715c2b6bb42 199 Pfam PF13302 Acetyltransferase (GNAT) domain 15 153 1.5E-16 T 12-10-2018 IPR000182 GNAT domain Alide_3497 5a861dab313259eecdef7616c7add240 264 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 2.5E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3497 5a861dab313259eecdef7616c7add240 264 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 2.5E-7 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3497 5a861dab313259eecdef7616c7add240 264 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 80 2.3E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3497 5a861dab313259eecdef7616c7add240 264 Gene3D G3DSA:3.40.1410.10 80 234 4.4E-32 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_3497 5a861dab313259eecdef7616c7add240 264 Pfam PF07702 UTRA domain 102 238 1.5E-24 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_3497 5a861dab313259eecdef7616c7add240 264 Gene3D G3DSA:1.10.10.10 11 79 1.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3497 5a861dab313259eecdef7616c7add240 264 SMART SM00866 101 240 7.0E-24 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_3497 5a861dab313259eecdef7616c7add240 264 SMART SM00345 21 80 6.1E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3497 5a861dab313259eecdef7616c7add240 264 SUPERFAMILY SSF46785 10 84 7.23E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3497 5a861dab313259eecdef7616c7add240 264 SUPERFAMILY SSF64288 68 244 2.83E-37 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_0795 9eff0df8743d30bdca327ddfd70ac893 410 SUPERFAMILY SSF53067 1 145 1.42E-22 T 12-10-2018 Alide_0795 9eff0df8743d30bdca327ddfd70ac893 410 Gene3D G3DSA:3.30.420.380 5 168 3.2E-19 T 12-10-2018 Alide_0795 9eff0df8743d30bdca327ddfd70ac893 410 Pfam PF05134 Type II secretion system (T2SS), protein L 27 242 1.2E-11 T 12-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain Alide_0795 9eff0df8743d30bdca327ddfd70ac893 410 Pfam PF12693 GspL periplasmic domain 265 353 5.4E-9 T 12-10-2018 IPR025691 GspL periplasmic domain Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 PRINTS PR01166 Cytochrome c oxidase subunit II signature 127 146 1.7E-38 T 12-10-2018 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 PRINTS PR01166 Cytochrome c oxidase subunit II signature 105 125 1.7E-38 T 12-10-2018 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 PRINTS PR01166 Cytochrome c oxidase subunit II signature 178 199 1.7E-38 T 12-10-2018 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 PRINTS PR01166 Cytochrome c oxidase subunit II signature 240 257 1.7E-38 T 12-10-2018 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 PRINTS PR01166 Cytochrome c oxidase subunit II signature 222 239 1.7E-38 T 12-10-2018 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 PRINTS PR01166 Cytochrome c oxidase subunit II signature 202 222 1.7E-38 T 12-10-2018 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 PRINTS PR01166 Cytochrome c oxidase subunit II signature 93 105 1.7E-38 T 12-10-2018 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 Gene3D G3DSA:1.10.760.10 272 387 2.7E-24 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 SUPERFAMILY SSF81464 31 122 3.43E-27 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 Gene3D G3DSA:2.60.40.420 128 271 5.0E-52 T 12-10-2018 IPR008972 Cupredoxin Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 292 363 1.7E-12 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 SUPERFAMILY SSF46626 273 377 5.3E-22 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 131 256 1.8E-37 T 12-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 36 118 3.6E-14 T 12-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 Gene3D G3DSA:1.10.287.90 33 127 6.3E-26 T 12-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 44 267 2.3E-59 T 12-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 203 251 - T 12-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3488 66398dbe18c7c38255e9e348f9913fad 387 SUPERFAMILY SSF49503 124 315 3.79E-51 T 12-10-2018 IPR008972 Cupredoxin Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 PIRSF PIRSF000429 1 392 7.6E-131 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 Pfam PF02803 Thiolase, C-terminal domain 270 392 1.1E-50 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 SUPERFAMILY SSF53901 3 270 3.26E-85 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 1.2E-143 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 Gene3D G3DSA:3.40.47.10 126 389 1.2E-153 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 SUPERFAMILY SSF53901 271 392 3.1E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 Gene3D G3DSA:3.40.47.10 6 276 1.2E-153 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2262 d2cfa1e0b4ed487533a50217cbb94e8f 392 Pfam PF00108 Thiolase, N-terminal domain 4 262 7.5E-104 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_1041 3b263cd508393192d68c2b6f32c01e11 118 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 39 117 2.0E-27 T 12-10-2018 Alide_1041 3b263cd508393192d68c2b6f32c01e11 118 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 36 118 1.5E-37 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1041 3b263cd508393192d68c2b6f32c01e11 118 Pfam PF00312 Ribosomal protein S15 37 117 2.5E-37 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1041 3b263cd508393192d68c2b6f32c01e11 118 Gene3D G3DSA:1.10.287.10 32 118 6.2E-35 T 12-10-2018 Alide_1041 3b263cd508393192d68c2b6f32c01e11 118 SMART SM01387 37 117 1.4E-52 T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1041 3b263cd508393192d68c2b6f32c01e11 118 ProSitePatterns PS00362 Ribosomal protein S15 signature. 68 98 - T 12-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1041 3b263cd508393192d68c2b6f32c01e11 118 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 32 118 21.555 T 12-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1041 3b263cd508393192d68c2b6f32c01e11 118 SUPERFAMILY SSF47060 32 118 3.53E-34 T 12-10-2018 IPR009068 S15/NS1, RNA-binding Alide_3698 c0755a197dd4e015245fac13d4900bd5 401 Gene3D G3DSA:3.40.50.2300 145 363 1.7E-102 T 12-10-2018 Alide_3698 c0755a197dd4e015245fac13d4900bd5 401 SUPERFAMILY SSF53822 26 397 8.24E-90 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_3698 c0755a197dd4e015245fac13d4900bd5 401 Pfam PF13458 Periplasmic binding protein 26 363 1.6E-84 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_3698 c0755a197dd4e015245fac13d4900bd5 401 Gene3D G3DSA:3.40.50.2300 50 356 1.7E-102 T 12-10-2018 Alide_4126 fbeef0c5c286422d9cf5647361475da5 306 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 17 306 25.417 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_4126 fbeef0c5c286422d9cf5647361475da5 306 ProSitePatterns PS01058 SAICAR synthetase signature 2. 209 217 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_4126 fbeef0c5c286422d9cf5647361475da5 306 Pfam PF01259 SAICAR synthetase 20 272 7.9E-99 T 12-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_4126 fbeef0c5c286422d9cf5647361475da5 306 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 20 305 2.0E-75 T 12-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 Alide_4126 fbeef0c5c286422d9cf5647361475da5 306 ProSitePatterns PS01057 SAICAR synthetase signature 1. 110 124 - T 12-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Alide_4126 fbeef0c5c286422d9cf5647361475da5 306 SUPERFAMILY SSF56104 11 305 1.54E-98 T 12-10-2018 Alide_4126 fbeef0c5c286422d9cf5647361475da5 306 Gene3D G3DSA:3.30.200.20 7 108 2.8E-31 T 12-10-2018 Alide_4126 fbeef0c5c286422d9cf5647361475da5 306 Gene3D G3DSA:3.30.470.20 110 251 4.8E-56 T 12-10-2018 Alide_2601 a0ffc0db92046066b0e17442808b2908 320 Pfam PF00498 FHA domain 227 271 1.4E-9 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Alide_2601 a0ffc0db92046066b0e17442808b2908 320 Gene3D G3DSA:2.60.200.20 217 297 2.7E-13 T 12-10-2018 Alide_2601 a0ffc0db92046066b0e17442808b2908 320 SUPERFAMILY SSF55073 11 182 5.49E-37 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_2601 a0ffc0db92046066b0e17442808b2908 320 SMART SM00240 225 274 3.0E-4 T 12-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Alide_2601 a0ffc0db92046066b0e17442808b2908 320 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 15 177 1.9E-13 T 12-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 Alide_2601 a0ffc0db92046066b0e17442808b2908 320 SUPERFAMILY SSF49879 217 296 6.7E-15 T 12-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 Alide_2601 a0ffc0db92046066b0e17442808b2908 320 Gene3D G3DSA:3.30.70.1230 5 182 4.0E-41 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_3639 85e3fd11ca5840466ab45ba545861879 352 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 321 3.0E-116 T 12-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 Alide_3639 85e3fd11ca5840466ab45ba545861879 352 SUPERFAMILY SSF51395 10 321 3.11E-85 T 12-10-2018 Alide_3639 85e3fd11ca5840466ab45ba545861879 352 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 324 47.792 T 12-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 Alide_3639 85e3fd11ca5840466ab45ba545861879 352 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Alide_3639 85e3fd11ca5840466ab45ba545861879 352 Gene3D G3DSA:1.10.1200.80 255 327 2.0E-11 T 12-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 Alide_3639 85e3fd11ca5840466ab45ba545861879 352 PIRSF PIRSF006621 1 327 3.3E-102 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Alide_3639 85e3fd11ca5840466ab45ba545861879 352 Pfam PF01207 Dihydrouridine synthase (Dus) 14 314 2.7E-101 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Alide_3639 85e3fd11ca5840466ab45ba545861879 352 Gene3D G3DSA:3.20.20.70 7 252 1.6E-73 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3185 a293a25e016c867a99f4800728351ffb 317 Pfam PF00698 Acyl transferase domain 7 284 6.3E-32 T 12-10-2018 IPR014043 Acyl transferase Alide_3185 a293a25e016c867a99f4800728351ffb 317 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 4 297 3.9E-97 T 12-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Alide_3185 a293a25e016c867a99f4800728351ffb 317 SUPERFAMILY SSF55048 129 203 5.75E-14 T 12-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Alide_3185 a293a25e016c867a99f4800728351ffb 317 Gene3D G3DSA:3.40.366.10 6 290 1.6E-92 T 12-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 Alide_3185 a293a25e016c867a99f4800728351ffb 317 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 8 306 1.7E-35 T 12-10-2018 IPR020801 Polyketide synthase, acyl transferase domain Alide_3185 a293a25e016c867a99f4800728351ffb 317 SUPERFAMILY SSF52151 5 315 8.37E-75 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Alide_3185 a293a25e016c867a99f4800728351ffb 317 PIRSF PIRSF000446 1 317 5.5E-101 T 12-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Alide_3185 a293a25e016c867a99f4800728351ffb 317 Gene3D G3DSA:3.30.70.250 125 203 1.6E-92 T 12-10-2018 Alide_2015 084fd0a83be54b4ff213a7a8a4eb93d8 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 323 3.0E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2015 084fd0a83be54b4ff213a7a8a4eb93d8 327 PIRSF PIRSF017082 1 327 2.4E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2015 084fd0a83be54b4ff213a7a8a4eb93d8 327 Gene3D G3DSA:3.40.190.150 31 317 2.8E-104 T 12-10-2018 Alide_2015 084fd0a83be54b4ff213a7a8a4eb93d8 327 SUPERFAMILY SSF53850 114 291 1.85E-10 T 12-10-2018 Alide_2015 084fd0a83be54b4ff213a7a8a4eb93d8 327 Gene3D G3DSA:3.40.190.10 129 252 2.8E-104 T 12-10-2018 Alide_0252 a9cd711fdc9f1d90c599d7502ea0a9db 342 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 50 237 7.5E-14 T 12-10-2018 IPR000477 Reverse transcriptase domain Alide_0252 a9cd711fdc9f1d90c599d7502ea0a9db 342 SUPERFAMILY SSF56672 99 229 2.22E-9 T 12-10-2018 Alide_0252 a9cd711fdc9f1d90c599d7502ea0a9db 342 SUPERFAMILY SSF46992 252 313 1.01E-5 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0252 a9cd711fdc9f1d90c599d7502ea0a9db 342 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 102 120 4.6E-15 T 12-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 Alide_0252 a9cd711fdc9f1d90c599d7502ea0a9db 342 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 86 100 4.6E-15 T 12-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 Alide_0252 a9cd711fdc9f1d90c599d7502ea0a9db 342 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 238 244 4.6E-15 T 12-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 Alide_0252 a9cd711fdc9f1d90c599d7502ea0a9db 342 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 183 194 4.6E-15 T 12-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 Alide_0252 a9cd711fdc9f1d90c599d7502ea0a9db 342 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 150 163 4.6E-15 T 12-10-2018 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 509 628 2.5E-25 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 Gene3D G3DSA:2.40.110.10 169 327 3.7E-22 T 12-10-2018 Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 SUPERFAMILY SSF47203 326 499 1.77E-37 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 Gene3D G3DSA:1.20.140.10 328 499 4.1E-40 T 12-10-2018 Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 171 291 1.2E-10 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 49 156 5.5E-6 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 21 44 3.1E-6 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 SUPERFAMILY SSF56645 46 294 1.57E-41 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 322 491 5.2E-17 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_1568 6e22b361d7a501444b58add6afb0b19c 633 Gene3D G3DSA:1.10.540.10 30 167 1.7E-8 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 SUPERFAMILY SSF46609 1 84 2.88E-33 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 81 1.0E-31 T 12-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 8.5E-33 T 12-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 Gene3D G3DSA:1.10.287.990 20 82 6.2E-25 T 12-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 Gene3D G3DSA:2.40.500.20 83 193 5.2E-36 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 PIRSF PIRSF000349 1 193 2.9E-77 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 SUPERFAMILY SSF54719 84 192 4.58E-38 T 12-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 12-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 2.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 2.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 2.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 2.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_2623 2f2446571306257aab92456aee0d8b3e 193 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 2.3E-22 T 12-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 Alide_0300 d9ee25d882aad1e1644169afce8591ec 371 Pfam PF13439 Glycosyltransferase Family 4 19 174 4.8E-14 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Alide_0300 d9ee25d882aad1e1644169afce8591ec 371 Gene3D G3DSA:3.40.50.2000 73 362 5.3E-56 T 12-10-2018 Alide_0300 d9ee25d882aad1e1644169afce8591ec 371 Gene3D G3DSA:3.40.50.2000 172 350 5.3E-56 T 12-10-2018 Alide_0300 d9ee25d882aad1e1644169afce8591ec 371 Pfam PF00534 Glycosyl transferases group 1 192 344 3.8E-27 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 Alide_0300 d9ee25d882aad1e1644169afce8591ec 371 SUPERFAMILY SSF53756 9 363 8.07E-67 T 12-10-2018 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 Gene3D G3DSA:3.40.30.60 361 504 7.0E-50 T 12-10-2018 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 PIRSF PIRSF005419 8 694 6.5E-238 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 Gene3D G3DSA:1.10.490.80 596 690 9.7E-6 T 12-10-2018 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 144 160 2.1E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 77 96 2.1E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 40 53 2.1E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 244 258 2.1E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 163 181 2.1E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 193 210 2.1E-53 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 Gene3D G3DSA:1.10.8.540 505 592 1.1E-22 T 12-10-2018 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 26 686 2.4E-255 T 12-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 Alide_3871 61869f9e666f980a2f78d0fca0f8aa2a 696 Pfam PF00771 FHIPEP family 33 682 2.9E-256 T 12-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 Gene3D G3DSA:1.10.8.660 377 428 6.1E-17 T 12-10-2018 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 Pfam PF00368 Hydroxymethylglutaryl-coenzyme A reductase 17 387 2.1E-114 T 12-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 ProSitePatterns PS01192 Hydroxymethylglutaryl-coenzyme A reductases signature 3. 372 385 - T 12-10-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 78 98 1.3E-7 T 12-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 175 193 1.3E-7 T 12-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 51 72 1.3E-7 T 12-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 314 335 1.3E-7 T 12-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 ProSitePatterns PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2. 326 333 - T 12-10-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 SUPERFAMILY SSF56542 8 428 8.11E-104 T 12-10-2018 IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily GO:0015936|GO:0016616|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 Gene3D G3DSA:3.30.70.420 111 221 1.0E-137 T 12-10-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 SUPERFAMILY SSF55035 112 220 9.68E-32 T 12-10-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 Gene3D G3DSA:3.90.770.10 15 373 1.0E-137 T 12-10-2018 IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 ProSitePatterns PS00066 Hydroxymethylglutaryl-coenzyme A reductases signature 1. 177 191 - T 12-10-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_3812 a7a1c8606d584d12caf874c1a34335d2 430 TIGRFAM TIGR00532 HMG_CoA_R_NAD: hydroxymethylglutaryl-CoA reductase, degradative 5 387 1.7E-128 T 12-10-2018 IPR004553 Hydroxymethylglutaryl-CoA reductase, bacterial-type GO:0015936|GO:0016616|GO:0050662 Alide_3457 d150b80e1dc7d12628547b9ef12ab28e 118 SUPERFAMILY SSF54913 17 116 4.82E-29 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Alide_3457 d150b80e1dc7d12628547b9ef12ab28e 118 Gene3D G3DSA:3.30.70.120 4 118 2.9E-28 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Alide_3457 d150b80e1dc7d12628547b9ef12ab28e 118 Pfam PF03091 CutA1 divalent ion tolerance protein 20 114 6.6E-27 T 12-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 Alide_2707 869954e94a34a22dbb44b1134573db0a 79 SUPERFAMILY SSF52833 1 76 2.0E-18 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2707 869954e94a34a22dbb44b1134573db0a 79 Gene3D G3DSA:3.40.30.10 1 76 3.4E-29 T 12-10-2018 Alide_2707 869954e94a34a22dbb44b1134573db0a 79 PIRSF PIRSF037031 1 78 1.3E-30 T 12-10-2018 IPR005243 Redox-active disulphide protein 2 Alide_2707 869954e94a34a22dbb44b1134573db0a 79 Pfam PF13192 Thioredoxin domain 3 76 3.2E-28 T 12-10-2018 IPR012336 Thioredoxin-like fold Alide_1068 b87274d8c9416308ce0b2a7e10906f09 451 PIRSF PIRSF005353 12 449 6.0E-172 T 12-10-2018 IPR026033 Purine permease PbuG-like Alide_1068 b87274d8c9416308ce0b2a7e10906f09 451 Pfam PF00860 Permease family 38 408 4.8E-55 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Alide_0121 a95aeb24939fa14f8b34c4745ffdf82e 321 SUPERFAMILY SSF53850 113 282 4.43E-13 T 12-10-2018 Alide_0121 a95aeb24939fa14f8b34c4745ffdf82e 321 Gene3D G3DSA:3.40.190.10 125 245 8.6E-101 T 12-10-2018 Alide_0121 a95aeb24939fa14f8b34c4745ffdf82e 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 317 9.4E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0121 a95aeb24939fa14f8b34c4745ffdf82e 321 Gene3D G3DSA:3.40.190.150 27 311 8.6E-101 T 12-10-2018 Alide_0121 a95aeb24939fa14f8b34c4745ffdf82e 321 PIRSF PIRSF017082 1 320 9.0E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1940 40f5a513c1a9e09569e931c24159230a 943 SUPERFAMILY SSF50447 616 698 9.66E-26 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_1940 40f5a513c1a9e09569e931c24159230a 943 SUPERFAMILY SSF50447 845 941 3.95E-30 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_1940 40f5a513c1a9e09569e931c24159230a 943 SUPERFAMILY SSF52540 438 613 2.15E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1940 40f5a513c1a9e09569e931c24159230a 943 SUPERFAMILY SSF46955 4 51 8.24E-9 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Pfam PF11987 Translation-initiation factor 2 729 833 1.6E-34 T 12-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 Alide_1940 40f5a513c1a9e09569e931c24159230a 943 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 363 943 8.6E-255 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Gene3D G3DSA:2.40.30.10 615 732 5.0E-40 T 12-10-2018 Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Pfam PF00009 Elongation factor Tu GTP binding domain 448 604 5.2E-32 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Gene3D G3DSA:3.30.56.50 3 51 3.9E-5 T 12-10-2018 Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Gene3D G3DSA:3.40.50.10050 738 844 4.2E-36 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Alide_1940 40f5a513c1a9e09569e931c24159230a 943 SUPERFAMILY SSF52156 721 850 4.84E-36 T 12-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 941 17.206 T 12-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 366 417 1.7E-14 T 12-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 9.1E-8 T 12-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Gene3D G3DSA:3.40.50.300 441 614 7.1E-68 T 12-10-2018 Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 61 99 2.4E-14 T 12-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial Alide_1940 40f5a513c1a9e09569e931c24159230a 943 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 447 601 8.4E-29 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_1940 40f5a513c1a9e09569e931c24159230a 943 Gene3D G3DSA:2.40.30.10 845 942 2.4E-30 T 12-10-2018 Alide_1961 1cf402fcc88e5f0474b95c7e1c505e93 143 PIRSF PIRSF000178 1 140 1.7E-25 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1961 1cf402fcc88e5f0474b95c7e1c505e93 143 Gene3D G3DSA:1.20.1300.10 2 140 7.8E-32 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1961 1cf402fcc88e5f0474b95c7e1c505e93 143 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 16 135 7.9E-24 T 12-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1961 1cf402fcc88e5f0474b95c7e1c505e93 143 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 136 1.3E-28 T 12-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1961 1cf402fcc88e5f0474b95c7e1c505e93 143 SUPERFAMILY SSF81343 19 139 8.5E-23 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_2372 55df35bb3fcd9e7cc541c851e16c5929 327 Gene3D G3DSA:3.40.190.170 25 325 2.4E-105 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Alide_2372 55df35bb3fcd9e7cc541c851e16c5929 327 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 309 2.5E-96 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Alide_2372 55df35bb3fcd9e7cc541c851e16c5929 327 PIRSF PIRSF006470 3 327 6.9E-110 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Alide_2372 55df35bb3fcd9e7cc541c851e16c5929 327 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 33 287 1.2E-92 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 578 682 1.9E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 Gene3D G3DSA:1.10.287.130 463 537 9.7E-6 T 12-10-2018 Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 SUPERFAMILY SSF55781 322 470 2.18E-13 T 12-10-2018 Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 SMART SM00388 475 541 0.0055 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 SMART SM00387 577 684 2.6E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 PRINTS PR00344 Bacterial sensor protein C-terminal signature 644 662 1.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 PRINTS PR00344 Bacterial sensor protein C-terminal signature 633 643 1.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 PRINTS PR00344 Bacterial sensor protein C-terminal signature 614 628 1.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 PRINTS PR00344 Bacterial sensor protein C-terminal signature 668 681 1.8E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 SUPERFAMILY SSF55874 550 682 6.16E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 TIGRFAM TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase 12 681 3.5E-239 T 12-10-2018 IPR014265 Signal transduction histidine kinase, PEP-CTERM system, putative Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 Gene3D G3DSA:3.30.565.10 546 688 1.5E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 SUPERFAMILY SSF47384 471 533 1.18E-5 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_0769 974673c13dd7619282c4a93aa1ebfc4e 693 Gene3D G3DSA:3.30.450.40 308 462 5.9E-12 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_2571 fe4df3dc71b587c096b32ec92fb1611a 330 Gene3D G3DSA:3.40.50.720 20 308 2.0E-106 T 12-10-2018 Alide_2571 fe4df3dc71b587c096b32ec92fb1611a 330 SUPERFAMILY SSF51735 106 284 1.63E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2571 fe4df3dc71b587c096b32ec92fb1611a 330 SUPERFAMILY SSF52283 6 138 2.76E-25 T 12-10-2018 Alide_2571 fe4df3dc71b587c096b32ec92fb1611a 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 27 315 8.9E-16 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Alide_2571 fe4df3dc71b587c096b32ec92fb1611a 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 284 7.4E-51 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Alide_2571 fe4df3dc71b587c096b32ec92fb1611a 330 Gene3D G3DSA:3.40.50.720 104 287 2.0E-106 T 12-10-2018 Alide_2908 da1a7be30c7a5dc50b90f5a3a20817d8 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 317 5.9E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2908 da1a7be30c7a5dc50b90f5a3a20817d8 322 Gene3D G3DSA:3.40.190.10 124 247 3.8E-97 T 12-10-2018 Alide_2908 da1a7be30c7a5dc50b90f5a3a20817d8 322 Gene3D G3DSA:3.40.190.150 27 312 3.8E-97 T 12-10-2018 Alide_2908 da1a7be30c7a5dc50b90f5a3a20817d8 322 SUPERFAMILY SSF53850 109 283 1.93E-9 T 12-10-2018 Alide_2908 da1a7be30c7a5dc50b90f5a3a20817d8 322 PIRSF PIRSF017082 1 322 9.0E-75 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 7 621 4.2E-230 T 12-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 Pfam PF16124 RecQ zinc-binding 343 404 3.9E-18 T 12-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 7 467 6.2E-153 T 12-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 Pfam PF00271 Helicase conserved C-terminal domain 225 330 6.9E-17 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 Gene3D G3DSA:3.40.50.300 2 208 5.4E-75 T 12-10-2018 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 Gene3D G3DSA:1.10.150.80 556 622 4.2E-21 T 12-10-2018 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 SMART SM00956 411 524 9.1E-44 T 12-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 SUPERFAMILY SSF52540 207 462 1.33E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 SMART SM00341 550 622 8.4E-9 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 SMART SM00487 13 217 5.4E-25 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 SUPERFAMILY SSF47819 549 622 9.38E-20 T 12-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 Pfam PF00570 HRDC domain 557 619 1.9E-20 T 12-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 Pfam PF00270 DEAD/DEAH box helicase 21 184 5.1E-16 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 Gene3D G3DSA:1.10.10.10 341 535 3.1E-44 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 SUPERFAMILY SSF52540 7 196 1.73E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 SMART SM00490 250 331 1.0E-25 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 Gene3D G3DSA:3.40.50.300 209 340 4.5E-39 T 12-10-2018 Alide_0122 039f3605e65216870ba4f60247d3ea8a 622 Pfam PF09382 RQC domain 406 527 2.4E-32 T 12-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Alide_1409 339690178b52928e60f0a91bef724554 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 318 1.2E-87 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1409 339690178b52928e60f0a91bef724554 323 PIRSF PIRSF017082 1 322 1.7E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1409 339690178b52928e60f0a91bef724554 323 Gene3D G3DSA:3.40.190.150 27 313 2.8E-103 T 12-10-2018 Alide_1409 339690178b52928e60f0a91bef724554 323 Gene3D G3DSA:3.40.190.10 122 248 2.8E-103 T 12-10-2018 Alide_1409 339690178b52928e60f0a91bef724554 323 SUPERFAMILY SSF53850 107 286 7.39E-12 T 12-10-2018 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 Pfam PF00224 Pyruvate kinase, barrel domain 7 345 1.9E-118 T 12-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 SUPERFAMILY SSF50800 75 168 6.98E-24 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Alide_4159 71b78944ec454ef9dd4c36f667200148 480 SUPERFAMILY SSF52935 330 478 1.44E-38 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 7 476 1.9E-155 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 PRINTS PR01050 Pyruvate kinase family signature 301 319 2.7E-59 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 2.7E-59 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 PRINTS PR01050 Pyruvate kinase family signature 224 250 2.7E-59 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 PRINTS PR01050 Pyruvate kinase family signature 320 336 2.7E-59 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 PRINTS PR01050 Pyruvate kinase family signature 251 275 2.7E-59 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 PRINTS PR01050 Pyruvate kinase family signature 64 80 2.7E-59 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 PRINTS PR01050 Pyruvate kinase family signature 276 300 2.7E-59 T 12-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 365 476 1.2E-30 T 12-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 Gene3D G3DSA:3.20.20.60 7 342 1.5E-163 T 12-10-2018 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 Gene3D G3DSA:2.40.33.10 75 172 1.5E-163 T 12-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 Gene3D G3DSA:3.40.1380.20 343 475 1.5E-163 T 12-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Alide_4159 71b78944ec454ef9dd4c36f667200148 480 SUPERFAMILY SSF51621 4 345 4.19E-91 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_2662 d937f443cbe26ffd7733f764b91bb296 1182 SUPERFAMILY SSF89550 1 258 2.75E-12 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Alide_2662 d937f443cbe26ffd7733f764b91bb296 1182 Pfam PF02811 PHP domain 4 168 1.4E-40 T 12-10-2018 IPR004013 PHP domain GO:0003824 Alide_2662 d937f443cbe26ffd7733f764b91bb296 1182 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 287 736 5.2E-170 T 12-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_2662 d937f443cbe26ffd7733f764b91bb296 1182 Gene3D G3DSA:3.20.20.140 1 265 1.4E-85 T 12-10-2018 Alide_2662 d937f443cbe26ffd7733f764b91bb296 1182 Gene3D G3DSA:1.10.10.1600 429 521 2.7E-24 T 12-10-2018 Alide_2662 d937f443cbe26ffd7733f764b91bb296 1182 Pfam PF14579 Helix-hairpin-helix motif 811 909 9.8E-24 T 12-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_2662 d937f443cbe26ffd7733f764b91bb296 1182 SMART SM00481 3 70 2.1E-21 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Alide_2662 d937f443cbe26ffd7733f764b91bb296 1182 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 2 1037 0.0 T 12-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_3960 d11aabef16c6a9d2870727c2300a22a9 134 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 134 32.023 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Alide_3960 d11aabef16c6a9d2870727c2300a22a9 134 Pfam PF00411 Ribosomal protein S11 24 133 7.9E-49 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Alide_3960 d11aabef16c6a9d2870727c2300a22a9 134 Gene3D G3DSA:3.30.420.80 6 134 9.2E-53 T 12-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 Alide_3960 d11aabef16c6a9d2870727c2300a22a9 134 ProSitePatterns PS00054 Ribosomal protein S11 signature. 102 124 - T 12-10-2018 IPR018102 Ribosomal S11, conserved site Alide_3960 d11aabef16c6a9d2870727c2300a22a9 134 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 15 131 1.4E-54 T 12-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_3960 d11aabef16c6a9d2870727c2300a22a9 134 SUPERFAMILY SSF53137 19 134 9.81E-46 T 12-10-2018 Alide_3960 d11aabef16c6a9d2870727c2300a22a9 134 PIRSF PIRSF002131 2 134 2.8E-52 T 12-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Alide_2646 94fde7d7d19f5e7b01e3abbee6f1af72 326 SUPERFAMILY SSF53850 115 289 5.43E-14 T 12-10-2018 Alide_2646 94fde7d7d19f5e7b01e3abbee6f1af72 326 Gene3D G3DSA:3.40.190.150 30 316 3.2E-120 T 12-10-2018 Alide_2646 94fde7d7d19f5e7b01e3abbee6f1af72 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 323 7.1E-103 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2646 94fde7d7d19f5e7b01e3abbee6f1af72 326 Gene3D G3DSA:3.40.190.10 127 251 3.2E-120 T 12-10-2018 Alide_2646 94fde7d7d19f5e7b01e3abbee6f1af72 326 PIRSF PIRSF017082 1 326 4.8E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2549 887756bd5a069290985977fa5b047f7a 257 Pfam PF00990 Diguanylate cyclase, GGDEF domain 56 213 4.9E-42 T 12-10-2018 IPR000160 GGDEF domain Alide_2549 887756bd5a069290985977fa5b047f7a 257 SUPERFAMILY SSF55073 59 217 5.57E-45 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_2549 887756bd5a069290985977fa5b047f7a 257 SMART SM00267 43 217 8.5E-45 T 12-10-2018 IPR000160 GGDEF domain Alide_2549 887756bd5a069290985977fa5b047f7a 257 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 53 217 3.3E-48 T 12-10-2018 IPR000160 GGDEF domain Alide_2549 887756bd5a069290985977fa5b047f7a 257 Gene3D G3DSA:3.30.70.270 49 222 7.3E-51 T 12-10-2018 Alide_2843 fa03f70e413bed34350419171435a20a 248 Pfam PF00106 short chain dehydrogenase 7 199 4.5E-58 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2843 fa03f70e413bed34350419171435a20a 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 186 1.3E-5 T 12-10-2018 Alide_2843 fa03f70e413bed34350419171435a20a 248 Gene3D G3DSA:3.40.50.720 1 247 8.8E-82 T 12-10-2018 Alide_2843 fa03f70e413bed34350419171435a20a 248 SUPERFAMILY SSF51735 5 247 2.71E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2843 fa03f70e413bed34350419171435a20a 248 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 6 247 2.0E-107 T 12-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 Alide_2843 fa03f70e413bed34350419171435a20a 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.5E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2843 fa03f70e413bed34350419171435a20a 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.5E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2843 fa03f70e413bed34350419171435a20a 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.5E-15 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2843 fa03f70e413bed34350419171435a20a 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_2843 fa03f70e413bed34350419171435a20a 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.1E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2843 fa03f70e413bed34350419171435a20a 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 6.1E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2843 fa03f70e413bed34350419171435a20a 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 6.1E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2843 fa03f70e413bed34350419171435a20a 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 6.1E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2843 fa03f70e413bed34350419171435a20a 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 6.1E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2843 fa03f70e413bed34350419171435a20a 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.1E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 ProSitePatterns PS00211 ABC transporters family signature. 439 453 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 SMART SM00382 317 516 1.8E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 SMART SM00382 39 236 7.8E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 518 542 4.6E-4 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 279 6.8E-5 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 Pfam PF00005 ABC transporter 31 186 2.5E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 Pfam PF00005 ABC transporter 309 467 1.8E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 SUPERFAMILY SSF52540 302 538 1.13E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 SUPERFAMILY SSF52540 14 258 9.67E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 Gene3D G3DSA:3.40.50.300 13 282 3.0E-82 T 12-10-2018 Alide_2677 275c24b6a15da1d5cc0a4f7305e614ee 545 Gene3D G3DSA:3.40.50.300 283 545 4.4E-78 T 12-10-2018 Alide_1390 1d9840b5c2349e688d5feb9a43e310ce 398 Pfam PF00202 Aminotransferase class-III 17 387 7.4E-110 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_1390 1d9840b5c2349e688d5feb9a43e310ce 398 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 12 389 1.2E-137 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Alide_1390 1d9840b5c2349e688d5feb9a43e310ce 398 Gene3D G3DSA:3.90.1150.10 11 383 3.0E-137 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_1390 1d9840b5c2349e688d5feb9a43e310ce 398 SUPERFAMILY SSF53383 11 389 9.39E-123 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_1390 1d9840b5c2349e688d5feb9a43e310ce 398 PIRSF PIRSF000521 4 153 7.4E-8 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_1390 1d9840b5c2349e688d5feb9a43e310ce 398 PIRSF PIRSF000521 165 395 1.7E-38 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_1390 1d9840b5c2349e688d5feb9a43e310ce 398 Gene3D G3DSA:3.40.640.10 55 303 3.0E-137 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_1390 1d9840b5c2349e688d5feb9a43e310ce 398 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 219 256 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_1390 1d9840b5c2349e688d5feb9a43e310ce 398 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 11 395 70.798 T 12-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Alide_2682 11d4758a6a91fc9ed4991bc0b2504435 266 Gene3D G3DSA:3.40.50.720 1 260 4.2E-50 T 12-10-2018 Alide_2682 11d4758a6a91fc9ed4991bc0b2504435 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 3.7E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2682 11d4758a6a91fc9ed4991bc0b2504435 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 3.7E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2682 11d4758a6a91fc9ed4991bc0b2504435 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.7E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2682 11d4758a6a91fc9ed4991bc0b2504435 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 3.7E-7 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2682 11d4758a6a91fc9ed4991bc0b2504435 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 256 3.7E-80 T 12-10-2018 Alide_2682 11d4758a6a91fc9ed4991bc0b2504435 266 SUPERFAMILY SSF51735 6 256 3.39E-58 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2682 11d4758a6a91fc9ed4991bc0b2504435 266 PIRSF PIRSF000094 1 264 2.5E-107 T 12-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.141 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 Gene3D G3DSA:1.10.1900.20 56 119 4.1E-29 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 Gene3D G3DSA:1.10.720.90 2 55 8.9E-26 T 12-10-2018 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 Pfam PF00453 Ribosomal protein L20 3 108 4.1E-49 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 SUPERFAMILY SSF74731 2 116 7.33E-50 T 12-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 3.8E-40 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 3.8E-40 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 3.8E-40 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 70 2.0E-21 T 12-10-2018 Alide_2510 f87919f093bf8dc15cf06a87a13a884e 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.0E-49 T 12-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 SUPERFAMILY SSF55781 57 193 2.71E-10 T 12-10-2018 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 Gene3D G3DSA:3.40.50.300 307 490 6.5E-60 T 12-10-2018 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 Gene3D G3DSA:1.10.8.60 491 568 2.1E-15 T 12-10-2018 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 532 541 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 SUPERFAMILY SSF46689 596 633 1.97E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 Gene3D G3DSA:3.30.450.40 14 198 5.0E-36 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 343 356 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 406 421 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 Pfam PF01590 GAF domain 76 194 4.5E-5 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 Gene3D G3DSA:1.10.10.60 595 635 2.3E-8 T 12-10-2018 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 614 634 6.1E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 597 614 6.1E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 SUPERFAMILY SSF52540 319 562 1.69E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 SMART SM00382 339 483 2.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 Pfam PF00158 Sigma-54 interaction domain 319 486 4.6E-66 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_2333 0b2e7cd2787c52b00c1c23f04f3eb25d 641 Pfam PF02954 Bacterial regulatory protein, Fis family 596 631 5.0E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3603 a34db979168be1981980ba9315772f4d 311 PIRSF PIRSF000398 31 309 8.5E-54 T 12-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 Alide_3603 a34db979168be1981980ba9315772f4d 311 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 213 219 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Alide_3603 a34db979168be1981980ba9315772f4d 311 TIGRFAM TIGR00571 dam: DNA adenine methylase 41 267 1.1E-39 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_3603 a34db979168be1981980ba9315772f4d 311 Gene3D G3DSA:3.40.50.150 41 265 2.1E-45 T 12-10-2018 Alide_3603 a34db979168be1981980ba9315772f4d 311 SUPERFAMILY SSF53335 40 281 2.07E-45 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_3603 a34db979168be1981980ba9315772f4d 311 Gene3D G3DSA:1.10.1020.10 91 191 2.1E-45 T 12-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 Alide_3603 a34db979168be1981980ba9315772f4d 311 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 44 60 8.2E-12 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_3603 a34db979168be1981980ba9315772f4d 311 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 65 79 8.2E-12 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_3603 a34db979168be1981980ba9315772f4d 311 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 210 222 8.2E-12 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_3603 a34db979168be1981980ba9315772f4d 311 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 84 97 8.2E-12 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_3603 a34db979168be1981980ba9315772f4d 311 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 44 228 2.6E-28 T 12-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Alide_1257 b0bf97d03cfa1c6889800ef1ca5151da 836 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 193 545 1.5E-53 T 12-10-2018 IPR010090 Phage tail tape measure protein Alide_1257 b0bf97d03cfa1c6889800ef1ca5151da 836 Pfam PF10145 Phage-related minor tail protein 234 439 1.2E-19 T 12-10-2018 IPR010090 Phage tail tape measure protein Alide_1021 4a56b7356bceb1a7c29c14cbf332d933 122 SUPERFAMILY SSF160719 26 118 3.79E-18 T 12-10-2018 Alide_1021 4a56b7356bceb1a7c29c14cbf332d933 122 Pfam PF04965 Gene 25-like lysozyme 30 109 1.1E-12 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Alide_1021 4a56b7356bceb1a7c29c14cbf332d933 122 Gene3D G3DSA:3.10.450.40 1 120 2.1E-22 T 12-10-2018 Alide_1035 0826354af5ba68f90171389f0cb46fba 630 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 348 511 3.0E-14 T 12-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain Alide_1035 0826354af5ba68f90171389f0cb46fba 630 Pfam PF17482 Phage tail sheath C-terminal domain 519 623 1.1E-9 T 12-10-2018 IPR020287 Tail sheath protein, C-terminal domain Alide_1879 425b8b9bef21f38015a7a4faf782e92f 308 Pfam PF03466 LysR substrate binding domain 95 295 1.5E-28 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1879 425b8b9bef21f38015a7a4faf782e92f 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.6E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1879 425b8b9bef21f38015a7a4faf782e92f 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.6E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1879 425b8b9bef21f38015a7a4faf782e92f 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.6E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1879 425b8b9bef21f38015a7a4faf782e92f 308 Gene3D G3DSA:3.40.190.290 95 302 2.0E-31 T 12-10-2018 Alide_1879 425b8b9bef21f38015a7a4faf782e92f 308 Gene3D G3DSA:1.10.10.10 4 94 1.6E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1879 425b8b9bef21f38015a7a4faf782e92f 308 SUPERFAMILY SSF53850 95 300 2.71E-31 T 12-10-2018 Alide_1879 425b8b9bef21f38015a7a4faf782e92f 308 SUPERFAMILY SSF46785 2 85 1.42E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1879 425b8b9bef21f38015a7a4faf782e92f 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.0E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1171 375142c4787b3188f03333ed654ca6d5 353 Gene3D G3DSA:3.40.50.300 7 263 4.8E-72 T 12-10-2018 Alide_1171 375142c4787b3188f03333ed654ca6d5 353 SUPERFAMILY SSF52540 8 246 5.8E-78 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1171 375142c4787b3188f03333ed654ca6d5 353 SMART SM00382 33 225 2.3E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1171 375142c4787b3188f03333ed654ca6d5 353 SUPERFAMILY SSF50331 255 345 1.67E-12 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_1171 375142c4787b3188f03333ed654ca6d5 353 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1171 375142c4787b3188f03333ed654ca6d5 353 Pfam PF08402 TOBE domain 276 345 1.7E-9 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Alide_1171 375142c4787b3188f03333ed654ca6d5 353 Pfam PF00005 ABC transporter 24 167 8.2E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2809 09aba0471a11ecae0a5c801e6b8a16af 179 SUPERFAMILY SSF160930 7 161 5.1E-56 T 12-10-2018 Alide_2809 09aba0471a11ecae0a5c801e6b8a16af 179 Pfam PF05280 Flagellar transcriptional activator (FlhC) 5 172 1.1E-75 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 Alide_2809 09aba0471a11ecae0a5c801e6b8a16af 179 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 6 169 1.0E-71 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 Alide_2809 09aba0471a11ecae0a5c801e6b8a16af 179 PIRSF PIRSF003159 3 179 3.0E-81 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 Alide_2809 09aba0471a11ecae0a5c801e6b8a16af 179 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 3 178 42.203 T 12-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 Alide_1625 0a043e205e7bd4e7edd4fe3f8535e42e 269 PIRSF PIRSF005902 1 266 1.7E-74 T 12-10-2018 IPR001130 TatD family GO:0016788 Alide_1625 0a043e205e7bd4e7edd4fe3f8535e42e 269 SUPERFAMILY SSF51556 2 263 4.81E-83 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_1625 0a043e205e7bd4e7edd4fe3f8535e42e 269 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 200 216 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Alide_1625 0a043e205e7bd4e7edd4fe3f8535e42e 269 Gene3D G3DSA:3.20.20.140 1 266 5.3E-86 T 12-10-2018 Alide_1625 0a043e205e7bd4e7edd4fe3f8535e42e 269 Pfam PF01026 TatD related DNase 3 263 9.1E-76 T 12-10-2018 IPR001130 TatD family GO:0016788 Alide_1625 0a043e205e7bd4e7edd4fe3f8535e42e 269 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Alide_1625 0a043e205e7bd4e7edd4fe3f8535e42e 269 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 263 1.8E-82 T 12-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 Alide_3878 e912ae95ed96cab0ac19e335c5d7062d 138 PIRSF PIRSF002889 1 138 9.2E-37 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Alide_3878 e912ae95ed96cab0ac19e335c5d7062d 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Alide_3878 e912ae95ed96cab0ac19e335c5d7062d 138 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 136 4.4E-29 T 12-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Alide_3878 e912ae95ed96cab0ac19e335c5d7062d 138 Pfam PF00460 Flagella basal body rod protein 9 38 4.5E-8 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Alide_1963 7b447cafeeeb3783418564cf686e7718 328 PIRSF PIRSF000102 2 327 2.8E-65 T 12-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 Alide_1963 7b447cafeeeb3783418564cf686e7718 328 Gene3D G3DSA:3.90.110.10 158 328 1.4E-59 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 Alide_1963 7b447cafeeeb3783418564cf686e7718 328 Gene3D G3DSA:3.40.50.720 1 157 1.6E-59 T 12-10-2018 Alide_1963 7b447cafeeeb3783418564cf686e7718 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 160 323 1.9E-30 T 12-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 Alide_1963 7b447cafeeeb3783418564cf686e7718 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 3 322 2.6E-142 T 12-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 Alide_1963 7b447cafeeeb3783418564cf686e7718 328 SUPERFAMILY SSF51735 4 158 1.9E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1963 7b447cafeeeb3783418564cf686e7718 328 SUPERFAMILY SSF56327 160 328 1.7E-57 T 12-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 Alide_1963 7b447cafeeeb3783418564cf686e7718 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 6 155 2.1E-36 T 12-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_1963 7b447cafeeeb3783418564cf686e7718 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 2 328 55.387 T 12-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 Alide_3288 78219e9f5a14073cf03015995cbf61b5 385 SUPERFAMILY SSF53901 244 371 8.38E-25 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3288 78219e9f5a14073cf03015995cbf61b5 385 Pfam PF02803 Thiolase, C-terminal domain 258 368 1.5E-5 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_3288 78219e9f5a14073cf03015995cbf61b5 385 Gene3D G3DSA:3.40.47.10 5 381 5.8E-110 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3288 78219e9f5a14073cf03015995cbf61b5 385 PIRSF PIRSF000429 4 380 5.1E-29 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3288 78219e9f5a14073cf03015995cbf61b5 385 SUPERFAMILY SSF53901 9 226 1.3E-23 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 Pfam PF00375 Sodium:dicarboxylate symporter family 20 412 1.3E-102 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 9.1E-25 T 12-10-2018 Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 PRINTS PR00173 Glutamate-aspartate symporter signature 85 110 9.1E-25 T 12-10-2018 Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 9.1E-25 T 12-10-2018 Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 PRINTS PR00173 Glutamate-aspartate symporter signature 156 178 9.1E-25 T 12-10-2018 Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 PRINTS PR00173 Glutamate-aspartate symporter signature 18 38 9.1E-25 T 12-10-2018 Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 13 439 37.67 T 12-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 Gene3D G3DSA:1.10.3860.10 7 426 1.2E-118 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 47 62 - T 12-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Alide_4089 5fb27037388a629de6fc11e1b2cb9231 445 SUPERFAMILY SSF118215 20 413 4.84E-114 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 Pfam PF00005 ABC transporter 333 468 8.4E-23 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 ProSitePatterns PS00211 ABC transporters family signature. 440 454 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 Pfam PF12848 ABC transporter 217 293 4.3E-29 T 12-10-2018 IPR032781 ABC-transporter extension domain Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 SUPERFAMILY SSF52540 298 519 1.24E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 Gene3D G3DSA:3.40.50.300 276 544 1.3E-53 T 12-10-2018 Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 Gene3D G3DSA:3.40.50.300 1 259 7.5E-58 T 12-10-2018 Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 SMART SM00382 342 512 8.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 SMART SM00382 26 225 2.2E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 SUPERFAMILY SSF52540 2 254 1.07E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2264 a93c47930cfce60b41ce179d0e69cd1d 642 Pfam PF00005 ABC transporter 17 178 6.4E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 SUPERFAMILY SSF53098 332 490 9.86E-49 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 SMART SM00316 670 741 1.0E-26 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 SUPERFAMILY SSF47781 581 653 1.09E-18 T 12-10-2018 IPR010994 RuvA domain 2-like Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 Gene3D G3DSA:2.40.50.140 652 745 1.3E-28 T 12-10-2018 Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 Gene3D G3DSA:1.10.10.650 1 108 2.5E-38 T 12-10-2018 IPR023319 Tex-like protein, HTH domain superfamily Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 SUPERFAMILY SSF50249 659 742 2.31E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 Gene3D G3DSA:1.10.150.310 520 651 3.0E-48 T 12-10-2018 Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 Pfam PF16921 Tex protein YqgF-like domain 336 472 1.6E-48 T 12-10-2018 IPR032639 Tex protein, YqgF-like domain Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 SMART SM00732 336 445 5.5E-33 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 SUPERFAMILY SSF47781 491 579 1.22E-26 T 12-10-2018 IPR010994 RuvA domain 2-like Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 Gene3D G3DSA:1.10.3500.10 111 519 9.4E-146 T 12-10-2018 IPR023323 Tex-like domain superfamily Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 Pfam PF00575 S1 RNA binding domain 669 741 3.1E-22 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 Pfam PF12836 Helix-hairpin-helix motif 512 576 1.4E-25 T 12-10-2018 Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 SUPERFAMILY SSF158832 1 331 1.2E-104 T 12-10-2018 Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 Gene3D G3DSA:3.30.420.140 335 472 9.4E-146 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 Alide_1596 6f19d5f58df8c8f20224616ea597f4c6 794 Pfam PF09371 Tex-like protein N-terminal domain 8 200 4.5E-64 T 12-10-2018 IPR018974 Tex-like protein, N-terminal Alide_3249 cf55d56164148b34cc8a98949757fc37 291 Pfam PF07963 Prokaryotic N-terminal methylation motif 12 36 6.0E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_3249 cf55d56164148b34cc8a98949757fc37 291 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 14 34 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_3249 cf55d56164148b34cc8a98949757fc37 291 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 36 8.7E-5 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_3249 cf55d56164148b34cc8a98949757fc37 291 Pfam PF16074 Type IV Pilus-assembly protein W 176 282 1.0E-10 T 12-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 Alide_1196 7e189bf2830cd8d94e3d79b2b2cea6e8 242 PIRSF PIRSF039137 5 242 5.4E-105 T 12-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Alide_1196 7e189bf2830cd8d94e3d79b2b2cea6e8 242 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1196 7e189bf2830cd8d94e3d79b2b2cea6e8 242 Pfam PF00005 ABC transporter 26 170 4.9E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1196 7e189bf2830cd8d94e3d79b2b2cea6e8 242 SUPERFAMILY SSF52540 8 240 2.0E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1196 7e189bf2830cd8d94e3d79b2b2cea6e8 242 Gene3D G3DSA:3.40.50.300 5 242 7.7E-61 T 12-10-2018 Alide_1196 7e189bf2830cd8d94e3d79b2b2cea6e8 242 SMART SM00382 34 226 1.6E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3403 6da5de13915ce77cd0a02039254f75e7 191 SUPERFAMILY SSF52980 80 185 5.09E-9 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Alide_3403 6da5de13915ce77cd0a02039254f75e7 191 Pfam PF04471 Restriction endonuclease 77 183 8.7E-17 T 12-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 Alide_2686 5bbce76f090d80bd8190e98c1b466912 249 Pfam PF03741 Integral membrane protein TerC family 15 189 7.0E-45 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 Alide_2686 5bbce76f090d80bd8190e98c1b466912 249 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 13 190 6.0E-70 T 12-10-2018 IPR022301 Integral membrane protein YjbE Alide_1614 2fd7080e288db91946897b997dab61ca 286 Pfam PF13673 Acetyltransferase (GNAT) domain 164 284 8.7E-17 T 12-10-2018 IPR000182 GNAT domain Alide_1614 2fd7080e288db91946897b997dab61ca 286 Pfam PF03061 Thioesterase superfamily 23 107 3.9E-13 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_1614 2fd7080e288db91946897b997dab61ca 286 SUPERFAMILY SSF54637 2 137 1.67E-35 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_1614 2fd7080e288db91946897b997dab61ca 286 Gene3D G3DSA:3.10.129.10 1 138 2.2E-33 T 12-10-2018 Alide_1614 2fd7080e288db91946897b997dab61ca 286 Gene3D G3DSA:3.40.630.30 144 285 1.4E-35 T 12-10-2018 Alide_1614 2fd7080e288db91946897b997dab61ca 286 SUPERFAMILY SSF55729 144 285 1.95E-33 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_1614 2fd7080e288db91946897b997dab61ca 286 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 11 126 1.5E-23 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Alide_0489 e7473ab7d55d18e2572eda210082aa41 221 Pfam PF04972 BON domain 61 117 1.3E-14 T 12-10-2018 IPR007055 BON domain Alide_0489 e7473ab7d55d18e2572eda210082aa41 221 Pfam PF04972 BON domain 129 193 4.5E-11 T 12-10-2018 IPR007055 BON domain Alide_0489 e7473ab7d55d18e2572eda210082aa41 221 SMART SM00749 55 118 0.72 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria Alide_0489 e7473ab7d55d18e2572eda210082aa41 221 SMART SM00749 133 196 1.0E-8 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria Alide_1093 6988bade0caef9ac3214968441b07711 285 Pfam PF00793 DAHP synthetase I family 7 272 3.4E-67 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Alide_1093 6988bade0caef9ac3214968441b07711 285 SUPERFAMILY SSF51569 2 275 2.11E-101 T 12-10-2018 Alide_1093 6988bade0caef9ac3214968441b07711 285 Gene3D G3DSA:3.20.20.70 3 281 1.4E-102 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1093 6988bade0caef9ac3214968441b07711 285 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 13 275 1.5E-123 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Alide_1093 6988bade0caef9ac3214968441b07711 285 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 8 276 53.064 T 12-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Alide_3183 7ad4bb273ad809ef6028bb9b66e83d97 79 SUPERFAMILY SSF47336 1 77 4.19E-24 T 12-10-2018 IPR036736 ACP-like superfamily Alide_3183 7ad4bb273ad809ef6028bb9b66e83d97 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 12-10-2018 IPR006162 Phosphopantetheine attachment site Alide_3183 7ad4bb273ad809ef6028bb9b66e83d97 79 Gene3D G3DSA:1.10.1200.10 1 79 2.7E-30 T 12-10-2018 IPR036736 ACP-like superfamily Alide_3183 7ad4bb273ad809ef6028bb9b66e83d97 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 4.7E-35 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Alide_3183 7ad4bb273ad809ef6028bb9b66e83d97 79 Pfam PF00550 Phosphopantetheine attachment site 7 72 1.1E-16 T 12-10-2018 IPR009081 Phosphopantetheine binding ACP domain Alide_3183 7ad4bb273ad809ef6028bb9b66e83d97 79 SMART SM00823 Phosphopantetheine attachment site 5 63 0.003 T 12-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 Alide_3183 7ad4bb273ad809ef6028bb9b66e83d97 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.336 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Alide_3183 7ad4bb273ad809ef6028bb9b66e83d97 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 72 3.0E-11 T 12-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Alide_0355 87b8cdea95587f8344dd9af7c3440913 297 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 171 286 9.8E-25 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Alide_0355 87b8cdea95587f8344dd9af7c3440913 297 SUPERFAMILY SSF51735 9 168 2.8E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0355 87b8cdea95587f8344dd9af7c3440913 297 Gene3D G3DSA:1.10.1040.10 170 296 4.2E-29 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_0355 87b8cdea95587f8344dd9af7c3440913 297 Gene3D G3DSA:3.40.50.720 1 169 2.3E-45 T 12-10-2018 Alide_0355 87b8cdea95587f8344dd9af7c3440913 297 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 9 167 7.4E-38 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Alide_0355 87b8cdea95587f8344dd9af7c3440913 297 PIRSF PIRSF000103 1 297 1.3E-62 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_0355 87b8cdea95587f8344dd9af7c3440913 297 SUPERFAMILY SSF48179 170 295 8.28E-29 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_3844 87cade51d9166b48218c4a07013446d4 209 Gene3D G3DSA:3.40.50.12740 2 209 4.7E-54 T 12-10-2018 Alide_3844 87cade51d9166b48218c4a07013446d4 209 SUPERFAMILY SSF46894 136 208 2.82E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_3844 87cade51d9166b48218c4a07013446d4 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 4.1E-16 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3844 87cade51d9166b48218c4a07013446d4 209 Pfam PF00072 Response regulator receiver domain 4 115 1.2E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3844 87cade51d9166b48218c4a07013446d4 209 SMART SM00421 146 203 9.4E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3844 87cade51d9166b48218c4a07013446d4 209 SUPERFAMILY SSF52172 3 133 3.27E-29 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3844 87cade51d9166b48218c4a07013446d4 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 7.7E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3844 87cade51d9166b48218c4a07013446d4 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 7.7E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3844 87cade51d9166b48218c4a07013446d4 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 7.7E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_3844 87cade51d9166b48218c4a07013446d4 209 SMART SM00448 2 115 1.6E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3946 ff988e1e57f2637fabb7481667672898 188 SUPERFAMILY SSF53271 9 159 1.56E-22 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_3946 ff988e1e57f2637fabb7481667672898 188 Gene3D G3DSA:3.40.50.2020 4 184 1.4E-29 T 12-10-2018 Alide_3946 ff988e1e57f2637fabb7481667672898 188 Pfam PF00156 Phosphoribosyl transferase domain 14 158 1.7E-19 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Alide_2759 403ac0027349be8bb82d5ba6115d2ca7 363 SUPERFAMILY SSF53659 4 359 8.83E-116 T 12-10-2018 Alide_2759 403ac0027349be8bb82d5ba6115d2ca7 363 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 4 358 2.9E-160 T 12-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 Alide_2759 403ac0027349be8bb82d5ba6115d2ca7 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 356 1.6E-86 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_2759 403ac0027349be8bb82d5ba6115d2ca7 363 SMART SM01329 7 356 2.4E-176 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_2759 403ac0027349be8bb82d5ba6115d2ca7 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 245 264 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Alide_2759 403ac0027349be8bb82d5ba6115d2ca7 363 Gene3D G3DSA:3.40.718.10 2 362 5.5E-144 T 12-10-2018 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 Gene3D G3DSA:3.40.50.720 91 186 5.8E-20 T 12-10-2018 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 SUPERFAMILY SSF53244 439 580 2.75E-40 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 SUPERFAMILY SSF51984 91 170 1.49E-13 T 12-10-2018 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 94 580 31.631 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 SUPERFAMILY SSF53623 208 437 1.98E-46 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 Pfam PF02875 Mur ligase family, glutamate ligase domain 441 510 1.5E-6 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 Pfam PF08245 Mur ligase middle domain 213 420 7.0E-29 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 95 578 9.0E-104 T 12-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 Gene3D G3DSA:3.90.190.20 441 576 2.6E-39 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_3708 6e6e66433705a98b9c58dcce0a968404 593 Gene3D G3DSA:3.40.1190.10 199 439 3.4E-55 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_0478 71b17032b2000803290c67415cbbfe50 557 SUPERFAMILY SSF53927 277 456 2.33E-25 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Alide_0478 71b17032b2000803290c67415cbbfe50 557 Gene3D G3DSA:3.40.50.300 39 247 1.2E-15 T 12-10-2018 Alide_0478 71b17032b2000803290c67415cbbfe50 557 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 401 437 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Alide_0478 71b17032b2000803290c67415cbbfe50 557 Gene3D G3DSA:3.40.140.10 274 485 5.2E-45 T 12-10-2018 Alide_0478 71b17032b2000803290c67415cbbfe50 557 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 275 448 6.9E-15 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Alide_2077 e6d91a0f7170b3a6e3707750c7b7cfd5 454 Pfam PF03237 Terminase-like family 27 236 2.1E-24 T 12-10-2018 IPR004921 Terminase large subunit, T4likevirus-type Alide_2077 e6d91a0f7170b3a6e3707750c7b7cfd5 454 Pfam PF17289 Terminase RNaseH-like domain 256 409 1.6E-20 T 12-10-2018 IPR035421 Terminase, large subunit gp17-like Alide_2077 e6d91a0f7170b3a6e3707750c7b7cfd5 454 Gene3D G3DSA:3.30.420.240 227 413 2.0E-13 T 12-10-2018 Alide_2077 e6d91a0f7170b3a6e3707750c7b7cfd5 454 Gene3D G3DSA:3.40.50.300 6 187 2.1E-37 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 SUPERFAMILY SSF81653 265 356 3.4E-22 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 229 735 1.6E-70 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 Pfam PF00403 Heavy-metal-associated domain 41 98 6.2E-11 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 456 462 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 SUPERFAMILY SSF55008 32 102 6.94E-19 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 Gene3D G3DSA:3.40.50.1000 435 703 1.5E-63 T 12-10-2018 IPR023214 HAD superfamily Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 SUPERFAMILY SSF56784 452 750 6.38E-44 T 12-10-2018 IPR036412 HAD-like superfamily Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 Pfam PF00122 E1-E2 ATPase 260 433 2.2E-45 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 Gene3D G3DSA:3.40.1110.10 465 583 1.5E-63 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 Gene3D G3DSA:2.70.150.20 249 360 4.5E-29 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 SUPERFAMILY SSF81665 200 448 4.05E-13 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 190 753 1.2E-148 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 173 753 4.1E-133 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 Pfam PF00702 haloacid dehalogenase-like hydrolase 450 664 4.2E-34 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 Gene3D G3DSA:3.30.70.100 36 104 5.7E-18 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 454 468 2.6E-19 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 674 686 2.6E-19 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 306 320 2.6E-19 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 598 608 2.6E-19 T 12-10-2018 Alide_3330 233d2f10375ec30f55d96ee303bafde4 778 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 651 670 2.6E-19 T 12-10-2018 Alide_0629 ac3e32f9b2a1c847ecdcb0cb174be235 334 Pfam PF02779 Transketolase, pyrimidine binding domain 1 175 5.8E-45 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_0629 ac3e32f9b2a1c847ecdcb0cb174be235 334 Gene3D G3DSA:3.40.50.970 1 200 1.4E-92 T 12-10-2018 Alide_0629 ac3e32f9b2a1c847ecdcb0cb174be235 334 Gene3D G3DSA:3.40.50.920 201 334 1.7E-54 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_0629 ac3e32f9b2a1c847ecdcb0cb174be235 334 SUPERFAMILY SSF52922 202 332 1.7E-41 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_0629 ac3e32f9b2a1c847ecdcb0cb174be235 334 Pfam PF02780 Transketolase, C-terminal domain 208 324 2.5E-34 T 12-10-2018 IPR033248 Transketolase, C-terminal domain Alide_0629 ac3e32f9b2a1c847ecdcb0cb174be235 334 SUPERFAMILY SSF52518 1 179 9.32E-68 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_0629 ac3e32f9b2a1c847ecdcb0cb174be235 334 SMART SM00861 1 176 2.8E-69 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_1473 636ab1dd9b1e1df3d868ea0345b2d947 174 Pfam PF03938 Outer membrane protein (OmpH-like) 13 166 2.2E-35 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Alide_1473 636ab1dd9b1e1df3d868ea0345b2d947 174 SMART SM00935 15 167 3.0E-57 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Alide_1473 636ab1dd9b1e1df3d868ea0345b2d947 174 PIRSF PIRSF002094 1 169 1.6E-52 T 12-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Alide_1473 636ab1dd9b1e1df3d868ea0345b2d947 174 Gene3D G3DSA:3.30.910.20 26 167 3.7E-38 T 12-10-2018 IPR024930 Skp domain superfamily Alide_1473 636ab1dd9b1e1df3d868ea0345b2d947 174 SUPERFAMILY SSF111384 26 167 4.97E-34 T 12-10-2018 Alide_0096 e983310be8c61f60e1c02af78d8313a8 733 SUPERFAMILY SSF56935 39 732 3.97E-104 T 12-10-2018 Alide_0096 e983310be8c61f60e1c02af78d8313a8 733 Gene3D G3DSA:2.170.130.10 85 202 3.5E-25 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_0096 e983310be8c61f60e1c02af78d8313a8 733 Pfam PF07715 TonB-dependent Receptor Plug Domain 91 187 9.4E-17 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_0096 e983310be8c61f60e1c02af78d8313a8 733 Gene3D G3DSA:2.40.170.20 203 732 1.9E-75 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Alide_0096 e983310be8c61f60e1c02af78d8313a8 733 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 92 732 2.4E-102 T 12-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 Alide_0096 e983310be8c61f60e1c02af78d8313a8 733 Pfam PF00593 TonB dependent receptor 309 731 8.3E-41 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_4504 1c8e3bc4f68a4a9eb2772ef15212eb20 180 Pfam PF16694 Cytochrome P460 54 170 1.2E-25 T 12-10-2018 IPR032033 Cytochrome P460 Alide_4504 1c8e3bc4f68a4a9eb2772ef15212eb20 180 Gene3D G3DSA:3.50.70.20 24 180 4.8E-46 T 12-10-2018 IPR038142 Cytochrome P460 superfamily Alide_2200 8398671c929ab4e57a2a4b1e699aab0d 483 Gene3D G3DSA:2.40.50.140 19 90 7.9E-18 T 12-10-2018 Alide_2200 8398671c929ab4e57a2a4b1e699aab0d 483 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 21 482 67.486 T 12-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 Alide_2200 8398671c929ab4e57a2a4b1e699aab0d 483 Gene3D G3DSA:3.40.50.150 96 476 3.5E-100 T 12-10-2018 Alide_2200 8398671c929ab4e57a2a4b1e699aab0d 483 Gene3D G3DSA:3.40.1350.30 143 284 3.5E-100 T 12-10-2018 Alide_2200 8398671c929ab4e57a2a4b1e699aab0d 483 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 464 474 - T 12-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site Alide_2200 8398671c929ab4e57a2a4b1e699aab0d 483 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 28 402 5.6E-64 T 12-10-2018 Alide_2200 8398671c929ab4e57a2a4b1e699aab0d 483 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 282 396 7.6E-10 T 12-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Alide_2200 8398671c929ab4e57a2a4b1e699aab0d 483 SUPERFAMILY SSF50249 22 77 4.34E-8 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_2200 8398671c929ab4e57a2a4b1e699aab0d 483 SUPERFAMILY SSF53335 80 481 1.92E-68 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2188 031f08c7815c078b2a90974277565c18 722 Gene3D G3DSA:3.30.450.20 60 185 1.3E-6 T 12-10-2018 Alide_2188 031f08c7815c078b2a90974277565c18 722 SMART SM00387 451 574 5.4E-30 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2188 031f08c7815c078b2a90974277565c18 722 Gene3D G3DSA:3.30.565.10 411 579 4.4E-49 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2188 031f08c7815c078b2a90974277565c18 722 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 212 328 1.0E-9 T 12-10-2018 IPR000014 PAS domain Alide_2188 031f08c7815c078b2a90974277565c18 722 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 517 4.1E-19 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2188 031f08c7815c078b2a90974277565c18 722 PRINTS PR00344 Bacterial sensor protein C-terminal signature 558 571 4.1E-19 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2188 031f08c7815c078b2a90974277565c18 722 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 531 4.1E-19 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2188 031f08c7815c078b2a90974277565c18 722 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 552 4.1E-19 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2188 031f08c7815c078b2a90974277565c18 722 SUPERFAMILY SSF47384 334 410 1.55E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_2188 031f08c7815c078b2a90974277565c18 722 SUPERFAMILY SSF55785 202 320 6.85E-15 T 12-10-2018 IPR035965 PAS domain superfamily Alide_2188 031f08c7815c078b2a90974277565c18 722 Pfam PF00989 PAS fold 216 316 9.6E-8 T 12-10-2018 IPR013767 PAS fold GO:0006355 Alide_2188 031f08c7815c078b2a90974277565c18 722 Gene3D G3DSA:3.40.50.2300 600 722 1.5E-27 T 12-10-2018 Alide_2188 031f08c7815c078b2a90974277565c18 722 SMART SM00448 602 715 3.7E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2188 031f08c7815c078b2a90974277565c18 722 Pfam PF00072 Response regulator receiver domain 604 715 5.5E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2188 031f08c7815c078b2a90974277565c18 722 Pfam PF13188 PAS domain 72 109 0.0012 T 12-10-2018 IPR000014 PAS domain Alide_2188 031f08c7815c078b2a90974277565c18 722 Pfam PF00512 His Kinase A (phospho-acceptor) domain 346 409 4.5E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2188 031f08c7815c078b2a90974277565c18 722 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 452 572 1.3E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2188 031f08c7815c078b2a90974277565c18 722 Gene3D G3DSA:3.30.450.20 210 325 1.8E-18 T 12-10-2018 Alide_2188 031f08c7815c078b2a90974277565c18 722 Gene3D G3DSA:1.10.287.130 336 408 3.9E-20 T 12-10-2018 Alide_2188 031f08c7815c078b2a90974277565c18 722 SMART SM00091 215 281 2.6E-4 T 12-10-2018 IPR000014 PAS domain Alide_2188 031f08c7815c078b2a90974277565c18 722 SMART SM00091 72 138 2.8 T 12-10-2018 IPR000014 PAS domain Alide_2188 031f08c7815c078b2a90974277565c18 722 SUPERFAMILY SSF55785 62 166 3.81E-7 T 12-10-2018 IPR035965 PAS domain superfamily Alide_2188 031f08c7815c078b2a90974277565c18 722 SUPERFAMILY SSF52172 601 720 4.41E-30 T 12-10-2018 IPR011006 CheY-like superfamily Alide_2188 031f08c7815c078b2a90974277565c18 722 SUPERFAMILY SSF55874 400 573 1.7E-39 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2188 031f08c7815c078b2a90974277565c18 722 SMART SM00388 344 410 1.3E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2419 8bbacbb99988cf21ded1e1010562a2b5 154 SUPERFAMILY SSF82649 6 141 4.71E-47 T 12-10-2018 Alide_2419 8bbacbb99988cf21ded1e1010562a2b5 154 Gene3D G3DSA:3.90.1010.10 1 144 1.3E-51 T 12-10-2018 Alide_2419 8bbacbb99988cf21ded1e1010562a2b5 154 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 6 139 2.0E-46 T 12-10-2018 Alide_2419 8bbacbb99988cf21ded1e1010562a2b5 154 Pfam PF01592 NifU-like N terminal domain 9 127 1.8E-24 T 12-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Alide_0887 65a5015898b3c3e28a8f4678efb19a16 1267 SUPERFAMILY SSF81901 340 599 8.37E-7 T 12-10-2018 Alide_0887 65a5015898b3c3e28a8f4678efb19a16 1267 Pfam PF13429 Tetratricopeptide repeat 495 778 1.2E-60 T 12-10-2018 Alide_0887 65a5015898b3c3e28a8f4678efb19a16 1267 Pfam PF14559 Tetratricopeptide repeat 30 75 1.2E-5 T 12-10-2018 Alide_0887 65a5015898b3c3e28a8f4678efb19a16 1267 Gene3D G3DSA:1.25.40.10 493 871 3.1E-6 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0887 65a5015898b3c3e28a8f4678efb19a16 1267 SUPERFAMILY SSF48452 136 385 1.73E-5 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0887 65a5015898b3c3e28a8f4678efb19a16 1267 Gene3D G3DSA:1.25.40.10 337 492 7.2E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 SMART SM00421 142 199 7.3E-17 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 Gene3D G3DSA:1.10.10.10 136 202 8.6E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 Gene3D G3DSA:3.40.50.2300 5 135 1.4E-40 T 12-10-2018 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 SMART SM00448 7 118 2.1E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 Pfam PF00072 Response regulator receiver domain 9 118 4.6E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 144 198 3.5E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 159 186 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 SUPERFAMILY SSF52172 6 155 1.1E-30 T 12-10-2018 IPR011006 CheY-like superfamily Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 SUPERFAMILY SSF46894 137 200 1.4E-16 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 1.3E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 1.3E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0968 608e4ccf88392ec9459fc52e77ca883d 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 1.3E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 316 1.5E-125 T 12-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 457 37.596 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 Pfam PF09190 DALR domain 346 401 1.4E-15 T 12-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 SMART SM00840 346 401 4.9E-23 T 12-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 Gene3D G3DSA:1.20.120.640 311 456 8.4E-37 T 12-10-2018 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 Gene3D G3DSA:3.40.50.620 1 309 1.9E-128 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 195 213 2.7E-28 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 226 247 2.7E-28 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 2.7E-28 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 2.7E-28 T 12-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 455 2.7E-159 T 12-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 SUPERFAMILY SSF52374 3 316 2.65E-94 T 12-10-2018 Alide_2119 51ee4a32b95f52a9943f461d38091e5f 458 SUPERFAMILY SSF47323 320 455 1.2E-32 T 12-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0142 7667b24ef998384307f23abc408e8ee2 332 Gene3D G3DSA:3.40.190.150 37 322 2.8E-107 T 12-10-2018 Alide_0142 7667b24ef998384307f23abc408e8ee2 332 Gene3D G3DSA:3.40.190.10 134 257 2.8E-107 T 12-10-2018 Alide_0142 7667b24ef998384307f23abc408e8ee2 332 PIRSF PIRSF017082 4 331 7.4E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0142 7667b24ef998384307f23abc408e8ee2 332 SUPERFAMILY SSF53850 130 296 3.26E-11 T 12-10-2018 Alide_0142 7667b24ef998384307f23abc408e8ee2 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 328 1.5E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2034 a78969ead2ed2409dbe3e361cccedc34 141 Pfam PF00472 RF-1 domain 11 134 3.1E-22 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Alide_2034 a78969ead2ed2409dbe3e361cccedc34 141 SUPERFAMILY SSF75620 10 102 3.73E-11 T 12-10-2018 Alide_2034 a78969ead2ed2409dbe3e361cccedc34 141 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 23 39 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Alide_2034 a78969ead2ed2409dbe3e361cccedc34 141 Gene3D G3DSA:3.30.160.20 7 139 8.8E-36 T 12-10-2018 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 140 170 - T 12-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 10 293 1.8E-107 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 Gene3D G3DSA:3.20.20.70 8 298 2.6E-106 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 SMART SM01130 7 296 9.9E-142 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 7 294 66.282 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 SUPERFAMILY SSF51569 3 298 4.4E-104 T 12-10-2018 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 PIRSF PIRSF001365 5 298 7.8E-87 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 Pfam PF00701 Dihydrodipicolinate synthetase family 8 294 4.8E-98 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 109 125 6.7E-30 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 6.7E-30 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 6.7E-30 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_1102 b445ea903af3f5c4a1cb775c09eeee75 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 135 152 6.7E-30 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_3746 098a07c93635442f81e881d2b41ab630 318 PIRSF PIRSF017082 2 318 7.7E-87 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3746 098a07c93635442f81e881d2b41ab630 318 Gene3D G3DSA:3.40.190.150 24 308 2.7E-109 T 12-10-2018 Alide_3746 098a07c93635442f81e881d2b41ab630 318 Gene3D G3DSA:3.40.190.10 120 243 2.7E-109 T 12-10-2018 Alide_3746 098a07c93635442f81e881d2b41ab630 318 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 44 313 4.6E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3746 098a07c93635442f81e881d2b41ab630 318 SUPERFAMILY SSF53850 105 269 7.76E-12 T 12-10-2018 Alide_3341 be836f0422696a2173d7f6727abb6492 563 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 9 561 44.415 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3341 be836f0422696a2173d7f6727abb6492 563 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 22 561 8.5E-227 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3341 be836f0422696a2173d7f6727abb6492 563 SUPERFAMILY SSF143975 4 382 9.68E-138 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3341 be836f0422696a2173d7f6727abb6492 563 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 469 480 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3341 be836f0422696a2173d7f6727abb6492 563 Pfam PF00920 Dehydratase family 39 558 1.1E-206 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3341 be836f0422696a2173d7f6727abb6492 563 SUPERFAMILY SSF52016 384 562 3.22E-56 T 12-10-2018 Alide_3341 be836f0422696a2173d7f6727abb6492 563 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 127 137 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3341 be836f0422696a2173d7f6727abb6492 563 Gene3D G3DSA:3.50.30.80 383 532 1.7E-50 T 12-10-2018 Alide_3690 616faa7174a446354d728961dca1b045 273 Gene3D G3DSA:3.40.50.150 10 240 5.2E-35 T 12-10-2018 Alide_3690 616faa7174a446354d728961dca1b045 273 Pfam PF08241 Methyltransferase domain 54 147 4.2E-22 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Alide_3690 616faa7174a446354d728961dca1b045 273 SUPERFAMILY SSF53335 25 253 3.63E-39 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_3810 53861aed300b278e33969455d9d18ea7 552 ProSitePatterns PS00455 Putative AMP-binding domain signature. 172 183 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_3810 53861aed300b278e33969455d9d18ea7 552 SUPERFAMILY SSF56801 5 526 3.66E-112 T 12-10-2018 Alide_3810 53861aed300b278e33969455d9d18ea7 552 Gene3D G3DSA:3.30.300.310 422 527 1.8E-21 T 12-10-2018 Alide_3810 53861aed300b278e33969455d9d18ea7 552 Pfam PF00501 AMP-binding enzyme 38 425 3.4E-73 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_3810 53861aed300b278e33969455d9d18ea7 552 Gene3D G3DSA:3.40.50.12780 27 421 1.9E-83 T 12-10-2018 Alide_3810 53861aed300b278e33969455d9d18ea7 552 Pfam PF13193 AMP-binding enzyme C-terminal domain 435 519 1.8E-10 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1300 1fb504b44c08a9d352ad064e4da00d17 324 SUPERFAMILY SSF53850 116 284 7.91E-16 T 12-10-2018 Alide_1300 1fb504b44c08a9d352ad064e4da00d17 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 314 1.7E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1300 1fb504b44c08a9d352ad064e4da00d17 324 Gene3D G3DSA:3.40.190.10 126 249 2.5E-95 T 12-10-2018 Alide_1300 1fb504b44c08a9d352ad064e4da00d17 324 Gene3D G3DSA:3.40.190.150 31 314 2.5E-95 T 12-10-2018 Alide_1300 1fb504b44c08a9d352ad064e4da00d17 324 PIRSF PIRSF017082 1 324 1.7E-65 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2226 071fc424661f762131b59382af378011 898 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 11 897 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Alide_2226 071fc424661f762131b59382af378011 898 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 369 432 9.9E-5 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_2226 071fc424661f762131b59382af378011 898 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 145 300 1.5E-10 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_2226 071fc424661f762131b59382af378011 898 PIRSF PIRSF000156 4 898 0.0 T 12-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Alide_2226 071fc424661f762131b59382af378011 898 Gene3D G3DSA:3.40.50.920 715 898 8.4E-74 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2226 071fc424661f762131b59382af378011 898 SUPERFAMILY SSF52518 61 474 2.05E-136 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2226 071fc424661f762131b59382af378011 898 SUPERFAMILY SSF52518 481 708 5.77E-94 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2226 071fc424661f762131b59382af378011 898 Gene3D G3DSA:3.40.50.970 60 478 5.6E-135 T 12-10-2018 Alide_2226 071fc424661f762131b59382af378011 898 Gene3D G3DSA:3.40.50.970 479 714 1.2E-102 T 12-10-2018 Alide_2226 071fc424661f762131b59382af378011 898 SUPERFAMILY SSF52922 712 896 1.5E-57 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 SUPERFAMILY SSF51246 331 456 7.85E-43 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 SUPERFAMILY SSF51230 604 681 5.5E-19 T 12-10-2018 IPR011053 Single hybrid motif Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 8.6E-81 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 Pfam PF02785 Biotin carboxylase C-terminal domain 336 452 4.3E-38 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 SUPERFAMILY SSF52440 1 113 2.45E-48 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 638 655 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 Gene3D G3DSA:2.40.50.100 615 681 8.2E-19 T 12-10-2018 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 Gene3D G3DSA:3.30.700.30 459 602 1.5E-16 T 12-10-2018 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 Gene3D G3DSA:3.30.470.130 1 457 1.3E-200 T 12-10-2018 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 SUPERFAMILY SSF56059 83 348 1.94E-68 T 12-10-2018 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 Pfam PF00364 Biotin-requiring enzyme 618 680 1.7E-15 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 108 1.5E-45 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_2290 4c564f53df5c854b7b24d8bd306b3e09 682 SMART SM00878 336 452 5.8E-62 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 226 2.1E-25 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 Gene3D G3DSA:1.10.540.10 5 129 1.6E-51 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 Gene3D G3DSA:1.20.140.10 244 395 2.8E-43 T 12-10-2018 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 238 391 1.2E-37 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 133 145 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 PIRSF PIRSF016578 16 105 1.6E-5 T 12-10-2018 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 PIRSF PIRSF016578 139 395 2.3E-13 T 12-10-2018 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 350 369 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 SUPERFAMILY SSF56645 9 251 2.75E-86 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 Gene3D G3DSA:2.40.110.10 130 243 2.0E-43 T 12-10-2018 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 SUPERFAMILY SSF47203 237 392 1.61E-42 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3833 2729fcbe91117bf2e27cf9b473ae7c5e 396 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 16 127 5.1E-40 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0816 c2becf1175266875477a356763cea9a7 316 Hamap MF_00492 Transaldolase [tal]. 1 316 47.455 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Alide_0816 c2becf1175266875477a356763cea9a7 316 ProSitePatterns PS00958 Transaldolase active site. 122 139 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Alide_0816 c2becf1175266875477a356763cea9a7 316 SUPERFAMILY SSF51569 1 313 8.48E-108 T 12-10-2018 Alide_0816 c2becf1175266875477a356763cea9a7 316 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 12-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Alide_0816 c2becf1175266875477a356763cea9a7 316 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 13 310 3.1E-92 T 12-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Alide_0816 c2becf1175266875477a356763cea9a7 316 Gene3D G3DSA:3.20.20.70 1 316 5.7E-130 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0816 c2becf1175266875477a356763cea9a7 316 TIGRFAM TIGR00874 talAB: transaldolase 2 314 1.6E-132 T 12-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 SUPERFAMILY SSF51735 11 164 2.19E-28 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 167 271 4.2E-35 T 12-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 226 249 - T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 PIRSF PIRSF000193 10 274 5.6E-68 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 11 271 7.6E-76 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 9 271 25.492 T 12-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 SUPERFAMILY SSF48179 166 275 5.78E-34 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 Gene3D G3DSA:3.40.50.720 10 168 5.6E-40 T 12-10-2018 Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 Gene3D G3DSA:1.10.3730.10 169 276 2.2E-38 T 12-10-2018 Alide_3977 2be5595df1a4f15d59f1eb66bf0f5443 279 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 11 102 1.8E-13 T 12-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Alide_4291 9aff2d905e04030880cc60e3878e12f2 325 PIRSF PIRSF017082 1 325 4.6E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4291 9aff2d905e04030880cc60e3878e12f2 325 SUPERFAMILY SSF53850 110 283 2.76E-12 T 12-10-2018 Alide_4291 9aff2d905e04030880cc60e3878e12f2 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 321 1.8E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4291 9aff2d905e04030880cc60e3878e12f2 325 Gene3D G3DSA:3.40.190.150 30 315 3.2E-102 T 12-10-2018 Alide_4291 9aff2d905e04030880cc60e3878e12f2 325 Gene3D G3DSA:3.40.190.10 127 250 3.2E-102 T 12-10-2018 Alide_3220 d678144506fc76386110862002803aa9 360 SUPERFAMILY SSF56300 8 272 1.25E-29 T 12-10-2018 Alide_3220 d678144506fc76386110862002803aa9 360 PRINTS PR00114 Serine/threonine phosphatase family signature 46 73 2.3E-5 T 12-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_3220 d678144506fc76386110862002803aa9 360 PRINTS PR00114 Serine/threonine phosphatase family signature 11 38 2.3E-5 T 12-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_3220 d678144506fc76386110862002803aa9 360 Pfam PF00149 Calcineurin-like phosphoesterase 12 100 1.2E-10 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Alide_2140 c20e17e34874fefed566da93ac2fae1f 474 SUPERFAMILY SSF54862 105 365 1.33E-30 T 12-10-2018 Alide_2140 c20e17e34874fefed566da93ac2fae1f 474 Pfam PF13746 4Fe-4S dicluster domain 217 319 7.1E-41 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_2140 c20e17e34874fefed566da93ac2fae1f 474 Pfam PF12801 4Fe-4S binding domain 97 137 3.9E-10 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_2140 c20e17e34874fefed566da93ac2fae1f 474 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 268 279 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_2140 c20e17e34874fefed566da93ac2fae1f 474 Gene3D G3DSA:2.60.40.10 357 472 4.6E-25 T 12-10-2018 IPR013783 Immunoglobulin-like fold Alide_2140 c20e17e34874fefed566da93ac2fae1f 474 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 41 459 2.3E-146 T 12-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 Alide_2140 c20e17e34874fefed566da93ac2fae1f 474 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 356 473 3.4E-28 T 12-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.4E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.4E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.4E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 Gene3D G3DSA:3.40.190.10 162 255 1.8E-45 T 12-10-2018 Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 SUPERFAMILY SSF53850 91 271 9.59E-25 T 12-10-2018 Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 Pfam PF03466 LysR substrate binding domain 89 271 2.4E-23 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 2.1E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 Gene3D G3DSA:3.40.190.10 96 260 1.8E-45 T 12-10-2018 Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 Gene3D G3DSA:1.10.10.10 1 86 1.8E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0007 b572961c81c24e83112a8c2f4d5c380d 280 SUPERFAMILY SSF46785 2 85 9.8E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 SUPERFAMILY SSF46785 6 85 4.17E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 5.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 5.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 5.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 Pfam PF03466 LysR substrate binding domain 90 291 5.5E-27 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 SUPERFAMILY SSF53850 92 297 3.1E-28 T 12-10-2018 Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 Gene3D G3DSA:3.40.190.10 96 278 3.6E-28 T 12-10-2018 Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 Gene3D G3DSA:1.10.10.10 1 87 1.6E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 Gene3D G3DSA:3.40.190.10 166 268 3.6E-28 T 12-10-2018 Alide_1295 1527810c1d4905f6beccb34d7ddf47f9 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.9E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 247 1.3E-61 T 12-10-2018 Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 Gene3D G3DSA:3.40.50.720 1 250 1.0E-82 T 12-10-2018 Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 3.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.2E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.8E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_3302 3c6dc700c0ef2f7aeb762796891a1259 250 SUPERFAMILY SSF51735 5 248 6.77E-81 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0840 5a1875bbe5e975222b6469c2483f420c 356 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 12 354 5.9E-95 T 12-10-2018 IPR005883 Type IV pilus assembly protein PilM Alide_0840 5a1875bbe5e975222b6469c2483f420c 356 SUPERFAMILY SSF53067 193 353 1.2E-21 T 12-10-2018 Alide_0840 5a1875bbe5e975222b6469c2483f420c 356 PIRSF PIRSF019169 1 355 1.1E-117 T 12-10-2018 IPR005883 Type IV pilus assembly protein PilM Alide_0840 5a1875bbe5e975222b6469c2483f420c 356 Gene3D G3DSA:3.30.420.40 191 318 7.5E-82 T 12-10-2018 Alide_0840 5a1875bbe5e975222b6469c2483f420c 356 SUPERFAMILY SSF53067 35 175 1.94E-15 T 12-10-2018 Alide_0840 5a1875bbe5e975222b6469c2483f420c 356 Gene3D G3DSA:3.30.1490.300 89 148 7.5E-82 T 12-10-2018 Alide_0840 5a1875bbe5e975222b6469c2483f420c 356 Pfam PF11104 Type IV pilus assembly protein PilM; 14 354 9.2E-148 T 12-10-2018 IPR005883 Type IV pilus assembly protein PilM Alide_0840 5a1875bbe5e975222b6469c2483f420c 356 Gene3D G3DSA:3.30.420.40 13 352 7.5E-82 T 12-10-2018 Alide_4235 251a7e07e017bb34d2b6b051063b7952 569 Pfam PF05977 Transmembrane secretion effector 50 565 1.8E-151 T 12-10-2018 IPR010290 Transmembrane secretion effector Alide_4235 251a7e07e017bb34d2b6b051063b7952 569 SUPERFAMILY SSF103473 59 447 2.62E-49 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_4235 251a7e07e017bb34d2b6b051063b7952 569 Gene3D G3DSA:1.20.1250.20 56 441 2.2E-37 T 12-10-2018 Alide_1672 bc97e8323ce7b56f4cdf6b43591f013b 110 Gene3D G3DSA:3.30.1330.70 1 110 5.4E-12 T 12-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 Alide_1672 bc97e8323ce7b56f4cdf6b43591f013b 110 SUPERFAMILY SSF103084 2 100 1.44E-13 T 12-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 Alide_4547 103242c6181500331fb5b4250d1b27ca 294 SUPERFAMILY SSF49265 175 254 5.64E-7 T 12-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Alide_4547 103242c6181500331fb5b4250d1b27ca 294 Gene3D G3DSA:2.60.40.10 176 262 4.4E-6 T 12-10-2018 IPR013783 Immunoglobulin-like fold Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 SMART SM00271 4 64 2.3E-31 T 12-10-2018 IPR001623 DnaJ domain Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 SUPERFAMILY SSF49493 117 260 5.89E-19 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 375 41.5 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 SUPERFAMILY SSF49493 262 347 6.02E-23 T 12-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 Gene3D G3DSA:1.10.287.110 1 116 1.5E-37 T 12-10-2018 IPR036869 Chaperone J-domain superfamily Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 Pfam PF00684 DnaJ central domain 150 210 1.2E-14 T 12-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 SUPERFAMILY SSF57938 137 213 2.88E-22 T 12-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 Gene3D G3DSA:2.60.260.20 258 362 7.1E-30 T 12-10-2018 Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 352 2.1E-137 T 12-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 Gene3D G3DSA:2.10.230.10 142 212 3.8E-25 T 12-10-2018 Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 PRINTS PR00625 DnaJ domain signature 7 25 3.4E-33 T 12-10-2018 IPR001623 DnaJ domain Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 PRINTS PR00625 DnaJ domain signature 44 64 3.4E-33 T 12-10-2018 IPR001623 DnaJ domain Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 PRINTS PR00625 DnaJ domain signature 64 83 3.4E-33 T 12-10-2018 IPR001623 DnaJ domain Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 PRINTS PR00625 DnaJ domain signature 25 40 3.4E-33 T 12-10-2018 IPR001623 DnaJ domain Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 Pfam PF01556 DnaJ C terminal domain 124 336 6.4E-43 T 12-10-2018 IPR002939 Chaperone DnaJ, C-terminal Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 ProSitePatterns PS00636 Nt-dnaJ domain signature. 49 68 - T 12-10-2018 IPR018253 DnaJ domain, conserved site Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 SUPERFAMILY SSF46565 1 112 3.66E-37 T 12-10-2018 IPR036869 Chaperone J-domain superfamily Alide_3127 1bb53b0e24c522ffdbad9015a25b9917 377 Pfam PF00226 DnaJ domain 5 69 1.9E-27 T 12-10-2018 IPR001623 DnaJ domain Alide_2176 b1acabd03af25db4db1e27128a21390f 335 Gene3D G3DSA:3.40.50.720 104 312 1.6E-113 T 12-10-2018 Alide_2176 b1acabd03af25db4db1e27128a21390f 335 Gene3D G3DSA:3.40.50.720 3 320 1.6E-113 T 12-10-2018 Alide_2176 b1acabd03af25db4db1e27128a21390f 335 SUPERFAMILY SSF52283 1 137 4.04E-20 T 12-10-2018 Alide_2176 b1acabd03af25db4db1e27128a21390f 335 SUPERFAMILY SSF51735 102 297 4.16E-51 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2176 b1acabd03af25db4db1e27128a21390f 335 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 296 1.1E-49 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Alide_2176 b1acabd03af25db4db1e27128a21390f 335 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 39 327 8.6E-16 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Alide_2235 05051d3b0ad75483fdddd2d8073b1c52 454 Pfam PF03972 MmgE/PrpD family 7 432 5.4E-107 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_2235 05051d3b0ad75483fdddd2d8073b1c52 454 Gene3D G3DSA:3.30.1330.120 270 399 5.0E-117 T 12-10-2018 Alide_2235 05051d3b0ad75483fdddd2d8073b1c52 454 SUPERFAMILY SSF103378 5 444 1.7E-103 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_2235 05051d3b0ad75483fdddd2d8073b1c52 454 Gene3D G3DSA:1.10.4100.10 27 417 5.0E-117 T 12-10-2018 Alide_3880 ef63bf7b6106ff21ccad439e2a54b874 220 Pfam PF13860 FlgD Ig-like domain 110 177 1.8E-11 T 12-10-2018 IPR025965 FlgD Ig-like domain Alide_3880 ef63bf7b6106ff21ccad439e2a54b874 220 Pfam PF13861 FlgD Tudor-like domain 87 216 4.9E-11 T 12-10-2018 IPR025963 FlgD Tudor-like domain Alide_3880 ef63bf7b6106ff21ccad439e2a54b874 220 Gene3D G3DSA:2.30.30.910 88 213 3.2E-18 T 12-10-2018 Alide_3880 ef63bf7b6106ff21ccad439e2a54b874 220 Gene3D G3DSA:2.60.40.4070 104 186 3.2E-18 T 12-10-2018 Alide_3880 ef63bf7b6106ff21ccad439e2a54b874 220 Pfam PF03963 Flagellar hook capping protein - N-terminal region 10 78 2.8E-21 T 12-10-2018 IPR005648 Flagellar hook capping protein Alide_2334 e62ceaa05d88bf939703adb3855e8766 291 Pfam PF12697 Alpha/beta hydrolase family 18 251 3.6E-18 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2334 e62ceaa05d88bf939703adb3855e8766 291 SUPERFAMILY SSF53474 3 258 7.91E-48 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2334 e62ceaa05d88bf939703adb3855e8766 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 9.1E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2334 e62ceaa05d88bf939703adb3855e8766 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 41 56 9.1E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2334 e62ceaa05d88bf939703adb3855e8766 291 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 9.1E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2334 e62ceaa05d88bf939703adb3855e8766 291 Gene3D G3DSA:3.40.50.1820 9 258 2.2E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 - T 12-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 SUPERFAMILY SSF51735 3 167 1.22E-66 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 103 3.1E-40 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 Gene3D G3DSA:3.30.360.10 150 315 2.8E-151 T 12-10-2018 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 SMART SM00846 3 151 6.7E-97 T 12-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 PIRSF PIRSF000149 1 333 3.5E-133 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 SUPERFAMILY SSF55347 150 313 2.14E-74 T 12-10-2018 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 1.9E-45 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 1.9E-45 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 1.9E-45 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 1.9E-45 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 1.9E-45 T 12-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 2.3E-135 T 12-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 313 8.5E-67 T 12-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_4170 9bd2407bd55d0d6a8cab6545d9c75072 333 Gene3D G3DSA:3.40.50.720 4 326 2.8E-151 T 12-10-2018 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SMART SM00487 607 797 2.6E-29 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Pfam PF00270 DEAD/DEAH box helicase 612 769 2.2E-17 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SUPERFAMILY SSF52540 7 339 1.01E-94 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Pfam PF02559 CarD-like/TRCF domain 480 582 1.2E-24 T 12-10-2018 IPR003711 CarD-like/TRCF domain Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SMART SM00982 1015 1115 4.2E-45 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SUPERFAMILY SSF52540 790 997 3.29E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Gene3D G3DSA:3.90.1150.50 1011 1155 8.0E-38 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SMART SM01058 479 583 3.5E-46 T 12-10-2018 IPR003711 CarD-like/TRCF domain Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Gene3D G3DSA:3.40.50.11180 19 334 5.8E-114 T 12-10-2018 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Gene3D G3DSA:3.30.2060.10 131 216 5.8E-114 T 12-10-2018 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 32 1116 26.91 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Pfam PF00271 Helicase conserved C-terminal domain 813 916 5.6E-17 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Gene3D G3DSA:3.40.50.11140 353 452 8.0E-12 T 12-10-2018 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SUPERFAMILY SSF52540 351 464 6.99E-24 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SUPERFAMILY SSF143517 1001 1151 3.53E-38 T 12-10-2018 IPR037235 TRCF-like, C-terminal domain Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 150 1088 0.0 T 12-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Pfam PF03461 TRCF domain 1016 1108 2.5E-24 T 12-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SUPERFAMILY SSF52540 530 790 2.25E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SUPERFAMILY SSF141259 471 555 5.36E-21 T 12-10-2018 IPR036101 CarD-like/TRCF domain superfamily Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 SMART SM00490 833 917 1.8E-16 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Gene3D G3DSA:2.30.30.840 483 548 4.7E-226 T 12-10-2018 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Gene3D G3DSA:3.40.50.300 549 788 4.7E-226 T 12-10-2018 Alide_1309 b75dbead9a09347461a1b2f007d4c106 1163 Gene3D G3DSA:3.40.50.300 478 996 4.7E-226 T 12-10-2018 Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 1.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.1E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 241 1.4E-53 T 12-10-2018 Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 5.8E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 5.8E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 5.8E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 Gene3D G3DSA:3.40.50.720 4 246 7.1E-72 T 12-10-2018 Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 SUPERFAMILY SSF51735 10 242 8.21E-71 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3697 0d1e6ec587b72393477dbc6925e0b556 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 178 0.0026 T 12-10-2018 Alide_1140 ff1bcd820d36b89c47506429552322ce 734 Gene3D G3DSA:3.40.50.300 3 216 1.1E-40 T 12-10-2018 Alide_1140 ff1bcd820d36b89c47506429552322ce 734 SMART SM00490 283 367 4.0E-10 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1140 ff1bcd820d36b89c47506429552322ce 734 Gene3D G3DSA:3.40.50.300 246 393 7.7E-17 T 12-10-2018 Alide_1140 ff1bcd820d36b89c47506429552322ce 734 Pfam PF00271 Helicase conserved C-terminal domain 262 366 2.0E-13 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1140 ff1bcd820d36b89c47506429552322ce 734 Pfam PF00270 DEAD/DEAH box helicase 29 197 2.6E-27 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_1140 ff1bcd820d36b89c47506429552322ce 734 SMART SM00487 23 229 4.4E-30 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_1140 ff1bcd820d36b89c47506429552322ce 734 SUPERFAMILY SSF52540 35 370 3.32E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1648 9ed3bb24a19f0309d196ca27157c567d 215 Gene3D G3DSA:3.90.320.10 1 207 8.3E-51 T 12-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal Alide_1648 9ed3bb24a19f0309d196ca27157c567d 215 SUPERFAMILY SSF52980 3 196 8.58E-39 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Alide_1648 9ed3bb24a19f0309d196ca27157c567d 215 Pfam PF09588 YqaJ-like viral recombinase domain 13 152 4.6E-17 T 12-10-2018 IPR019080 YqaJ viral recombinase Alide_0023 f669d05351d800c6eac56a848443b559 342 SUPERFAMILY SSF47203 197 327 2.58E-32 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0023 f669d05351d800c6eac56a848443b559 342 SUPERFAMILY SSF56645 1 155 1.1E-18 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0023 f669d05351d800c6eac56a848443b559 342 Gene3D G3DSA:1.20.140.10 202 339 1.5E-30 T 12-10-2018 Alide_0023 f669d05351d800c6eac56a848443b559 342 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 84 1.6E-13 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0023 f669d05351d800c6eac56a848443b559 342 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 203 322 9.9E-20 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0023 f669d05351d800c6eac56a848443b559 342 Gene3D G3DSA:1.10.540.10 1 115 4.4E-23 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_1857 3485b461ebac2fb723e01fb45e2fa09e 237 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 11 229 7.2E-86 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Alide_1857 3485b461ebac2fb723e01fb45e2fa09e 237 Gene3D G3DSA:3.40.50.150 11 235 2.1E-75 T 12-10-2018 Alide_1857 3485b461ebac2fb723e01fb45e2fa09e 237 SUPERFAMILY SSF53335 13 234 2.3E-49 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_1857 3485b461ebac2fb723e01fb45e2fa09e 237 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 11 235 38.226 T 12-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 Alide_1857 3485b461ebac2fb723e01fb45e2fa09e 237 Pfam PF13489 Methyltransferase domain 43 205 4.6E-27 T 12-10-2018 Alide_1009 1cc06e2ac1a9ed78e583404b85dfad6f 353 Gene3D G3DSA:3.30.70.1070 279 352 7.4E-9 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Alide_1009 1cc06e2ac1a9ed78e583404b85dfad6f 353 Pfam PF05036 Sporulation related domain 278 349 1.9E-12 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 Alide_1009 1cc06e2ac1a9ed78e583404b85dfad6f 353 SUPERFAMILY SSF110997 278 348 8.76E-14 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Alide_2253 e96bd0de56fad0a3fc5f5b5510045b8c 311 SUPERFAMILY SSF52151 8 306 1.62E-57 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Alide_2253 e96bd0de56fad0a3fc5f5b5510045b8c 311 Gene3D G3DSA:3.40.1090.10 98 200 2.6E-15 T 12-10-2018 Alide_2253 e96bd0de56fad0a3fc5f5b5510045b8c 311 Pfam PF01734 Patatin-like phospholipase 12 171 6.2E-20 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Alide_2253 e96bd0de56fad0a3fc5f5b5510045b8c 311 Gene3D G3DSA:3.40.1090.20 7 89 5.7E-10 T 12-10-2018 Alide_0002 e181492314ce57f59c2469627982edec 368 SUPERFAMILY SSF55979 247 368 1.38E-35 T 12-10-2018 Alide_0002 e181492314ce57f59c2469627982edec 368 SUPERFAMILY SSF55979 7 121 2.2E-21 T 12-10-2018 Alide_0002 e181492314ce57f59c2469627982edec 368 SMART SM00480 18 364 9.8E-117 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Alide_0002 e181492314ce57f59c2469627982edec 368 Gene3D G3DSA:3.10.150.10 250 368 5.1E-36 T 12-10-2018 Alide_0002 e181492314ce57f59c2469627982edec 368 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 248 367 1.7E-31 T 12-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Alide_0002 e181492314ce57f59c2469627982edec 368 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 7 367 3.8E-93 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Alide_0002 e181492314ce57f59c2469627982edec 368 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 7 120 1.5E-26 T 12-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Alide_0002 e181492314ce57f59c2469627982edec 368 Gene3D G3DSA:3.10.150.10 128 249 2.6E-39 T 12-10-2018 Alide_0002 e181492314ce57f59c2469627982edec 368 Pfam PF02767 DNA polymerase III beta subunit, central domain 132 245 1.3E-31 T 12-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 Alide_0002 e181492314ce57f59c2469627982edec 368 Gene3D G3DSA:3.10.150.10 2 124 2.8E-33 T 12-10-2018 Alide_0002 e181492314ce57f59c2469627982edec 368 PIRSF PIRSF000804 2 368 1.2E-113 T 12-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Alide_0002 e181492314ce57f59c2469627982edec 368 SUPERFAMILY SSF55979 130 246 4.71E-29 T 12-10-2018 Alide_1749 29c2760037c79d4b5c348bf4b533530b 168 Gene3D G3DSA:2.40.50.180 40 149 5.5E-40 T 12-10-2018 Alide_1749 29c2760037c79d4b5c348bf4b533530b 168 Pfam PF01584 CheW-like domain 21 157 1.0E-36 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_1749 29c2760037c79d4b5c348bf4b533530b 168 Gene3D G3DSA:2.30.30.40 23 148 5.5E-40 T 12-10-2018 Alide_1749 29c2760037c79d4b5c348bf4b533530b 168 SUPERFAMILY SSF50341 19 159 2.88E-38 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Alide_1749 29c2760037c79d4b5c348bf4b533530b 168 SMART SM00260 17 154 1.8E-38 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_2352 746c962dee1172707c5e83e00f3fff3a 286 SUPERFAMILY SSF53474 5 284 1.88E-80 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2352 746c962dee1172707c5e83e00f3fff3a 286 Pfam PF00756 Putative esterase 25 278 7.7E-53 T 12-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 Alide_2352 746c962dee1172707c5e83e00f3fff3a 286 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 284 4.1E-133 T 12-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 Alide_2352 746c962dee1172707c5e83e00f3fff3a 286 Gene3D G3DSA:3.40.50.1820 5 285 1.3E-84 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2873 c268597500d8cbce07cabd2c3533018a 76 SUPERFAMILY SSF55008 4 72 1.14E-18 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_2873 c268597500d8cbce07cabd2c3533018a 76 Gene3D G3DSA:3.30.70.100 2 72 1.2E-18 T 12-10-2018 Alide_2873 c268597500d8cbce07cabd2c3533018a 76 Pfam PF00403 Heavy-metal-associated domain 9 70 6.6E-10 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Alide_2941 66cd470ad650a92aaee7d2fa4f19dc82 277 Pfam PF09339 IclR helix-turn-helix domain 25 72 1.0E-13 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2941 66cd470ad650a92aaee7d2fa4f19dc82 277 SUPERFAMILY SSF46785 24 93 1.39E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2941 66cd470ad650a92aaee7d2fa4f19dc82 277 Gene3D G3DSA:3.30.450.40 93 272 3.1E-26 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_2941 66cd470ad650a92aaee7d2fa4f19dc82 277 Gene3D G3DSA:1.10.10.10 12 89 1.8E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2941 66cd470ad650a92aaee7d2fa4f19dc82 277 SMART SM00346 21 111 3.1E-7 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2941 66cd470ad650a92aaee7d2fa4f19dc82 277 SUPERFAMILY SSF55781 88 272 5.62E-27 T 12-10-2018 Alide_2941 66cd470ad650a92aaee7d2fa4f19dc82 277 Pfam PF01614 Bacterial transcriptional regulator 146 271 6.3E-9 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_2583 1a51758f5d36a2189c62215a9798997e 304 SMART SM01130 5 293 3.1E-80 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2583 1a51758f5d36a2189c62215a9798997e 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 4.0E-13 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2583 1a51758f5d36a2189c62215a9798997e 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 75 93 4.0E-13 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2583 1a51758f5d36a2189c62215a9798997e 304 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 4.0E-13 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2583 1a51758f5d36a2189c62215a9798997e 304 PIRSF PIRSF001365 1 301 6.8E-75 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2583 1a51758f5d36a2189c62215a9798997e 304 Pfam PF00701 Dihydrodipicolinate synthetase family 7 283 2.6E-50 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2583 1a51758f5d36a2189c62215a9798997e 304 Gene3D G3DSA:3.20.20.70 3 296 4.1E-80 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2583 1a51758f5d36a2189c62215a9798997e 304 SUPERFAMILY SSF51569 5 290 2.51E-80 T 12-10-2018 Alide_1148 f79b3690d168a9375ec50627566dad61 348 Pfam PF13519 von Willebrand factor type A domain 88 176 1.6E-17 T 12-10-2018 IPR002035 von Willebrand factor, type A Alide_1148 f79b3690d168a9375ec50627566dad61 348 SUPERFAMILY SSF53300 87 311 2.53E-30 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Alide_1148 f79b3690d168a9375ec50627566dad61 348 SMART SM00327 85 313 1.7E-17 T 12-10-2018 IPR002035 von Willebrand factor, type A Alide_1148 f79b3690d168a9375ec50627566dad61 348 Pfam PF00092 von Willebrand factor type A domain 223 306 3.9E-7 T 12-10-2018 IPR002035 von Willebrand factor, type A Alide_1148 f79b3690d168a9375ec50627566dad61 348 Pfam PF07584 Aerotolerance regulator N-terminal 1 75 1.5E-8 T 12-10-2018 IPR024163 Aerotolerance regulator, N-terminal Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 318 391 2.2E-14 T 12-10-2018 IPR019489 Clp ATPase, C-terminal Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 Gene3D G3DSA:3.40.50.300 60 316 2.0E-110 T 12-10-2018 Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 SUPERFAMILY SSF52540 64 405 2.7E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 SUPERFAMILY SSF57716 13 48 9.55E-12 T 12-10-2018 Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 SMART SM00994 12 51 3.2E-24 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 SMART SM01086 318 413 4.1E-31 T 12-10-2018 IPR019489 Clp ATPase, C-terminal Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 10 412 7.6E-202 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 Gene3D G3DSA:3.30.50.30 2 51 4.6E-25 T 12-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 Pfam PF06689 ClpX C4-type zinc finger 13 49 1.2E-19 T 12-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 416 52.937 T 12-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 Gene3D G3DSA:1.10.8.60 317 421 1.1E-37 T 12-10-2018 Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 SMART SM00382 114 267 3.2E-12 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2987 069f6fc5d4f108231fe1b35af8e4db5b 421 Pfam PF07724 AAA domain (Cdc48 subfamily) 115 311 1.4E-48 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_0631 17b4d04befc87a68538d92d79206b769 465 Gene3D G3DSA:3.50.50.60 153 271 1.9E-108 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0631 17b4d04befc87a68538d92d79206b769 465 SUPERFAMILY SSF51905 3 337 5.98E-55 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0631 17b4d04befc87a68538d92d79206b769 465 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 465 3.2E-140 T 12-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 141 159 5.2E-38 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 5.2E-38 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 5.2E-38 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 179 197 5.2E-38 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 5.2E-38 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 Gene3D G3DSA:3.50.50.60 9 332 1.9E-108 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0631 17b4d04befc87a68538d92d79206b769 465 PIRSF PIRSF000350 1 459 1.3E-79 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Alide_0631 17b4d04befc87a68538d92d79206b769 465 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 327 9.9E-67 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_0631 17b4d04befc87a68538d92d79206b769 465 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Alide_0631 17b4d04befc87a68538d92d79206b769 465 Gene3D G3DSA:3.30.390.30 345 465 3.0E-38 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 7.7E-68 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 7.7E-68 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 144 153 7.7E-68 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 429 449 7.7E-68 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 7.7E-68 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 7.7E-68 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 179 204 7.7E-68 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 7.7E-68 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 7.7E-68 T 12-10-2018 Alide_0631 17b4d04befc87a68538d92d79206b769 465 SUPERFAMILY SSF55424 345 463 3.44E-32 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_0631 17b4d04befc87a68538d92d79206b769 465 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 455 2.7E-28 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Alide_3308 11ce85abe6a92b32fff80d47a21af1d1 189 SUPERFAMILY SSF52540 18 188 8.4E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3308 11ce85abe6a92b32fff80d47a21af1d1 189 Gene3D G3DSA:3.40.50.300 7 188 1.7E-60 T 12-10-2018 Alide_3308 11ce85abe6a92b32fff80d47a21af1d1 189 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 18 188 9.6E-58 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 Alide_3308 11ce85abe6a92b32fff80d47a21af1d1 189 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 20 188 1.8E-57 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 Alide_3308 11ce85abe6a92b32fff80d47a21af1d1 189 PIRSF PIRSF015617 1 189 6.3E-62 T 12-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 Alide_1718 fd51f7c9499a2ca1bf137db043d9f4f3 273 Pfam PF01695 IstB-like ATP binding protein 53 229 4.1E-58 T 12-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Alide_1718 fd51f7c9499a2ca1bf137db043d9f4f3 273 SUPERFAMILY SSF52540 77 231 4.43E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1718 fd51f7c9499a2ca1bf137db043d9f4f3 273 Gene3D G3DSA:3.40.50.300 60 246 8.1E-40 T 12-10-2018 Alide_1718 fd51f7c9499a2ca1bf137db043d9f4f3 273 SMART SM00382 96 233 1.3E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1718 fd51f7c9499a2ca1bf137db043d9f4f3 273 PIRSF PIRSF003073 1 251 1.4E-73 T 12-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Alide_4548 fd51f7c9499a2ca1bf137db043d9f4f3 273 Pfam PF01695 IstB-like ATP binding protein 53 229 4.1E-58 T 12-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Alide_4548 fd51f7c9499a2ca1bf137db043d9f4f3 273 SUPERFAMILY SSF52540 77 231 4.43E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4548 fd51f7c9499a2ca1bf137db043d9f4f3 273 Gene3D G3DSA:3.40.50.300 60 246 8.1E-40 T 12-10-2018 Alide_4548 fd51f7c9499a2ca1bf137db043d9f4f3 273 SMART SM00382 96 233 1.3E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4548 fd51f7c9499a2ca1bf137db043d9f4f3 273 PIRSF PIRSF003073 1 251 1.4E-73 T 12-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Alide_4280 11f4d71b74a977f5e9b9f986744b8ee7 298 Pfam PF03466 LysR substrate binding domain 88 296 1.3E-21 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4280 11f4d71b74a977f5e9b9f986744b8ee7 298 Gene3D G3DSA:1.10.10.10 2 87 2.9E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4280 11f4d71b74a977f5e9b9f986744b8ee7 298 Gene3D G3DSA:3.40.190.10 221 269 3.3E-6 T 12-10-2018 Alide_4280 11f4d71b74a977f5e9b9f986744b8ee7 298 Gene3D G3DSA:3.40.190.10 88 186 5.1E-6 T 12-10-2018 Alide_4280 11f4d71b74a977f5e9b9f986744b8ee7 298 SUPERFAMILY SSF46785 1 112 8.16E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4280 11f4d71b74a977f5e9b9f986744b8ee7 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 6.5E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4280 11f4d71b74a977f5e9b9f986744b8ee7 298 Gene3D G3DSA:3.40.190.10 270 286 3.3E-6 T 12-10-2018 Alide_4280 11f4d71b74a977f5e9b9f986744b8ee7 298 SUPERFAMILY SSF53850 91 297 1.99E-22 T 12-10-2018 Alide_2500 17a8a756c75b20f8012758a3e809d79e 156 SMART SM01103 6 89 2.0E-37 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Alide_2500 17a8a756c75b20f8012758a3e809d79e 156 Pfam PF01985 CRS1 / YhbY (CRM) domain 6 89 4.0E-17 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Alide_2500 17a8a756c75b20f8012758a3e809d79e 156 SUPERFAMILY SSF75471 5 95 2.75E-25 T 12-10-2018 IPR035920 YhbY-like superfamily Alide_2500 17a8a756c75b20f8012758a3e809d79e 156 Gene3D G3DSA:3.30.110.60 4 103 1.7E-27 T 12-10-2018 IPR035920 YhbY-like superfamily Alide_2500 17a8a756c75b20f8012758a3e809d79e 156 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 15 94 7.0E-31 T 12-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 Alide_1069 d8928514aff9710ab428f39708b789e0 337 SUPERFAMILY SSF46785 28 109 3.6E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1069 d8928514aff9710ab428f39708b789e0 337 Gene3D G3DSA:1.10.10.10 22 112 2.0E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1069 d8928514aff9710ab428f39708b789e0 337 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 32 91 1.1E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1069 d8928514aff9710ab428f39708b789e0 337 SUPERFAMILY SSF53850 114 322 1.5E-36 T 12-10-2018 Alide_1069 d8928514aff9710ab428f39708b789e0 337 Gene3D G3DSA:3.40.190.10 114 318 9.4E-59 T 12-10-2018 Alide_1069 d8928514aff9710ab428f39708b789e0 337 Gene3D G3DSA:3.40.190.10 196 295 9.4E-59 T 12-10-2018 Alide_1069 d8928514aff9710ab428f39708b789e0 337 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 58 68 4.2E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1069 d8928514aff9710ab428f39708b789e0 337 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 4.2E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1069 d8928514aff9710ab428f39708b789e0 337 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 68 79 4.2E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1069 d8928514aff9710ab428f39708b789e0 337 Pfam PF03466 LysR substrate binding domain 121 323 1.4E-19 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2478 45326d62e89522ab74fc000c47ca2984 855 Pfam PF12705 PD-(D/E)XK nuclease superfamily 591 849 9.1E-37 T 12-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type Alide_2478 45326d62e89522ab74fc000c47ca2984 855 SUPERFAMILY SSF52540 221 558 2.23E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 Pfam PF13522 Glutamine amidotransferase domain 72 208 2.7E-20 T 12-10-2018 Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 Pfam PF01380 SIS domain 320 439 1.1E-22 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 Pfam PF01380 SIS domain 490 616 6.6E-24 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 Gene3D G3DSA:3.40.50.10490 269 635 4.4E-135 T 12-10-2018 Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 636 38.627 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 Gene3D G3DSA:3.60.20.10 2 249 5.9E-70 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 Gene3D G3DSA:3.40.50.10490 474 621 4.4E-135 T 12-10-2018 Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 SUPERFAMILY SSF56235 2 246 4.55E-67 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 SUPERFAMILY SSF53697 265 636 1.48E-106 T 12-10-2018 Alide_0721 b6ccde066bc60224c9ecab85418ae6d1 636 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 636 1.5E-234 T 12-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Alide_3799 12b8fac5986bf672dc8ca327e38c1752 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 257 8.9E-53 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3799 12b8fac5986bf672dc8ca327e38c1752 259 SUPERFAMILY SSF52096 3 257 2.02E-76 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3799 12b8fac5986bf672dc8ca327e38c1752 259 Gene3D G3DSA:3.90.226.10 1 200 4.1E-63 T 12-10-2018 Alide_3799 12b8fac5986bf672dc8ca327e38c1752 259 Gene3D G3DSA:1.10.12.10 202 259 1.5E-20 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_4256 b14019b125b5548fc35e8b525c40be14 118 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 1 106 6.1E-31 T 12-10-2018 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV Alide_3926 ba5735b2ce4fe2e79f3588f859545a3b 389 Gene3D G3DSA:2.40.230.10 118 389 3.9E-77 T 12-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 Alide_3926 ba5735b2ce4fe2e79f3588f859545a3b 389 SUPERFAMILY SSF56931 114 388 1.7E-77 T 12-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 Alide_3926 ba5735b2ce4fe2e79f3588f859545a3b 389 Pfam PF02253 Phospholipase A1 112 386 6.2E-92 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 Alide_3926 ba5735b2ce4fe2e79f3588f859545a3b 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 359 379 1.3E-9 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 Alide_3926 ba5735b2ce4fe2e79f3588f859545a3b 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 163 180 1.3E-9 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 Alide_3926 ba5735b2ce4fe2e79f3588f859545a3b 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 259 277 1.3E-9 T 12-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 Alide_0708 970a06a7842ac0896ff4a72b657a990e 155 PIRSF PIRSF002181 11 155 1.7E-46 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Alide_0708 970a06a7842ac0896ff4a72b657a990e 155 SUPERFAMILY SSF52161 14 152 1.57E-56 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Alide_0708 970a06a7842ac0896ff4a72b657a990e 155 Gene3D G3DSA:3.90.1180.10 14 155 3.8E-57 T 12-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Alide_0708 970a06a7842ac0896ff4a72b657a990e 155 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 28 154 26.966 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Alide_0708 970a06a7842ac0896ff4a72b657a990e 155 Pfam PF00572 Ribosomal protein L13 27 151 6.2E-53 T 12-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Alide_0708 970a06a7842ac0896ff4a72b657a990e 155 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 17 153 1.4E-58 T 12-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0238 ac605cb28fc8744d829f25c537e5cd69 212 PIRSF PIRSF009320 1 211 2.4E-51 T 12-10-2018 Alide_0238 ac605cb28fc8744d829f25c537e5cd69 212 SUPERFAMILY SSF52540 1 210 6.37E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0238 ac605cb28fc8744d829f25c537e5cd69 212 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 184 6.7E-15 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_0238 ac605cb28fc8744d829f25c537e5cd69 212 Gene3D G3DSA:3.40.50.300 1 210 1.5E-49 T 12-10-2018 Alide_2800 7991afda0a0d6eaef7bf4b86297dd06e 370 SUPERFAMILY SSF111369 108 218 1.18E-5 T 12-10-2018 Alide_2800 7991afda0a0d6eaef7bf4b86297dd06e 370 Gene3D G3DSA:2.40.50.100 109 225 5.7E-12 T 12-10-2018 Alide_2800 7991afda0a0d6eaef7bf4b86297dd06e 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 75 240 7.5E-9 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_2800 7991afda0a0d6eaef7bf4b86297dd06e 370 Gene3D G3DSA:2.40.420.20 297 370 5.1E-10 T 12-10-2018 Alide_2800 7991afda0a0d6eaef7bf4b86297dd06e 370 Gene3D G3DSA:2.40.30.170 226 260 5.7E-12 T 12-10-2018 Alide_2800 7991afda0a0d6eaef7bf4b86297dd06e 370 Gene3D G3DSA:1.10.287.470 126 193 5.7E-12 T 12-10-2018 Alide_2889 86f4a6aa8491826f9432d5cef289e35b 453 Gene3D G3DSA:3.30.300.30 343 443 4.7E-15 T 12-10-2018 Alide_2889 86f4a6aa8491826f9432d5cef289e35b 453 Pfam PF00501 AMP-binding enzyme 88 304 2.7E-6 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_2889 86f4a6aa8491826f9432d5cef289e35b 453 SUPERFAMILY SSF56801 34 398 3.92E-33 T 12-10-2018 Alide_2889 86f4a6aa8491826f9432d5cef289e35b 453 Gene3D G3DSA:3.40.50.12780 2 342 3.8E-80 T 12-10-2018 Alide_3663 edd4eb1301fa722b2f1d33f797eb91eb 182 PRINTS PR00624 Histone H5 signature 82 101 7.0E-5 T 12-10-2018 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 Alide_3663 edd4eb1301fa722b2f1d33f797eb91eb 182 PRINTS PR00624 Histone H5 signature 29 43 7.0E-5 T 12-10-2018 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 Alide_3663 edd4eb1301fa722b2f1d33f797eb91eb 182 PRINTS PR00624 Histone H5 signature 60 77 7.0E-5 T 12-10-2018 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 Alide_4318 21affd685689181bf6d2238a7b42119f 292 Pfam PF01614 Bacterial transcriptional regulator 166 285 2.4E-9 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_4318 21affd685689181bf6d2238a7b42119f 292 SUPERFAMILY SSF55781 120 288 1.83E-26 T 12-10-2018 Alide_4318 21affd685689181bf6d2238a7b42119f 292 Gene3D G3DSA:3.30.450.40 117 289 3.3E-26 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_4318 21affd685689181bf6d2238a7b42119f 292 SUPERFAMILY SSF46785 46 119 1.29E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4318 21affd685689181bf6d2238a7b42119f 292 Gene3D G3DSA:1.10.10.10 42 113 7.5E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4318 21affd685689181bf6d2238a7b42119f 292 SMART SM00346 46 136 2.1E-9 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_4318 21affd685689181bf6d2238a7b42119f 292 Pfam PF09339 IclR helix-turn-helix domain 48 99 4.4E-8 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 Pfam PF00512 His Kinase A (phospho-acceptor) domain 601 667 1.8E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 SUPERFAMILY SSF47384 593 667 1.37E-9 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 PRINTS PR00344 Bacterial sensor protein C-terminal signature 759 773 5.3E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 PRINTS PR00344 Bacterial sensor protein C-terminal signature 777 787 5.3E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 PRINTS PR00344 Bacterial sensor protein C-terminal signature 788 806 5.3E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 PRINTS PR00344 Bacterial sensor protein C-terminal signature 816 829 5.3E-13 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 SMART SM00388 600 670 2.3E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 SMART SM00091 330 397 2.0E-11 T 12-10-2018 IPR000014 PAS domain Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 SUPERFAMILY SSF55874 656 831 4.32E-31 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 Pfam PF00989 PAS fold 331 443 1.7E-18 T 12-10-2018 IPR013767 PAS fold GO:0006355 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 713 831 3.3E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 SUPERFAMILY SSF55785 317 444 4.99E-26 T 12-10-2018 IPR035965 PAS domain superfamily Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 SMART SM00387 712 832 8.2E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 SMART SM00086 404 446 1.2E-4 T 12-10-2018 IPR001610 PAC motif Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 Gene3D G3DSA:3.30.450.20 324 461 4.3E-26 T 12-10-2018 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 Gene3D G3DSA:3.30.450.20 57 211 2.6E-6 T 12-10-2018 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 Gene3D G3DSA:3.30.565.10 669 840 1.1E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 Gene3D G3DSA:1.10.287.130 605 667 8.2E-19 T 12-10-2018 Alide_2225 5066b23a8538eb7c769317b05024f4dd 850 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 330 453 4.5E-26 T 12-10-2018 IPR000014 PAS domain Alide_0975 d25fbc612ba00cc157ce0ccd1e57eff7 288 Pfam PF00005 ABC transporter 53 204 1.0E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0975 d25fbc612ba00cc157ce0ccd1e57eff7 288 Gene3D G3DSA:3.40.50.300 24 287 1.2E-85 T 12-10-2018 Alide_0975 d25fbc612ba00cc157ce0ccd1e57eff7 288 SMART SM00382 62 269 1.5E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0975 d25fbc612ba00cc157ce0ccd1e57eff7 288 ProSitePatterns PS00211 ABC transporters family signature. 177 191 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0975 d25fbc612ba00cc157ce0ccd1e57eff7 288 SUPERFAMILY SSF52540 26 276 3.48E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0975 d25fbc612ba00cc157ce0ccd1e57eff7 288 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 256 285 5.3E-7 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_2403 7138907891f2c8df4ff6b9c18d2dac59 500 Pfam PF00501 AMP-binding enzyme 9 402 2.3E-97 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_2403 7138907891f2c8df4ff6b9c18d2dac59 500 Gene3D G3DSA:3.40.50.12780 1 395 8.6E-108 T 12-10-2018 Alide_2403 7138907891f2c8df4ff6b9c18d2dac59 500 SUPERFAMILY SSF56801 5 498 3.66E-146 T 12-10-2018 Alide_2403 7138907891f2c8df4ff6b9c18d2dac59 500 Gene3D G3DSA:3.30.300.310 398 500 2.6E-32 T 12-10-2018 Alide_2403 7138907891f2c8df4ff6b9c18d2dac59 500 Pfam PF13193 AMP-binding enzyme C-terminal domain 411 486 1.7E-20 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_3911 b6aeedcdbd79269697e3021639702902 372 Gene3D G3DSA:3.20.20.210 2 372 1.8E-142 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Alide_3911 b6aeedcdbd79269697e3021639702902 372 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 13 363 2.0E-118 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Alide_3911 b6aeedcdbd79269697e3021639702902 372 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 145 161 - T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Alide_3911 b6aeedcdbd79269697e3021639702902 372 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 9 364 1.4E-127 T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Alide_3911 b6aeedcdbd79269697e3021639702902 372 SUPERFAMILY SSF51726 7 368 1.41E-107 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Alide_3911 b6aeedcdbd79269697e3021639702902 372 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 10 366 47.14 T 12-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Alide_3911 b6aeedcdbd79269697e3021639702902 372 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 26 35 - T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Alide_2533 67dcce162d9ac4273bda03f28c25683b 221 SUPERFAMILY SSF48498 96 216 7.71E-18 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_2533 67dcce162d9ac4273bda03f28c25683b 221 Pfam PF13305 WHG domain 104 193 3.1E-17 T 12-10-2018 IPR025996 WHG domain Alide_2533 67dcce162d9ac4273bda03f28c25683b 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 2.6E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2533 67dcce162d9ac4273bda03f28c25683b 221 SUPERFAMILY SSF46689 11 83 1.39E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2533 67dcce162d9ac4273bda03f28c25683b 221 Gene3D G3DSA:1.10.357.10 8 218 4.6E-48 T 12-10-2018 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 Gene3D G3DSA:3.40.47.10 7 277 3.3E-146 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 Gene3D G3DSA:3.40.47.10 128 390 3.3E-146 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 PIRSF PIRSF000429 1 394 1.4E-126 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 SUPERFAMILY SSF53901 272 393 3.67E-44 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 Pfam PF00108 Thiolase, N-terminal domain 5 263 2.3E-87 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 392 5.6E-135 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 SUPERFAMILY SSF53901 4 270 8.52E-81 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 Pfam PF02803 Thiolase, C-terminal domain 272 393 3.2E-46 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_2185 c3902b364fe3812c08290cb7f00e23d4 394 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 330 339 1.1E-26 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 414 430 1.1E-26 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 538 552 1.1E-26 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 104 117 1.1E-26 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 200 218 1.1E-26 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 SUPERFAMILY SSF56712 3 628 2.88E-166 T 12-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Pfam PF02201 SWIB/MDM2 domain 904 972 4.2E-25 T 12-10-2018 IPR003121 SWIB/MDM2 domain GO:0005515 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Gene3D G3DSA:2.70.20.10 224 506 3.2E-157 T 12-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Gene3D G3DSA:3.40.50.140 3 162 4.8E-44 T 12-10-2018 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 324 339 - T 12-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Pfam PF13342 C-terminal repeat of topoisomerase 671 735 9.4E-19 T 12-10-2018 IPR025589 Topoisomerase C-terminal repeat Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Pfam PF13342 C-terminal repeat of topoisomerase 787 848 7.1E-15 T 12-10-2018 IPR025589 Topoisomerase C-terminal repeat Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Pfam PF01131 DNA topoisomerase 162 614 1.3E-110 T 12-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 SMART SM00493 3 130 7.0E-15 T 12-10-2018 IPR006171 TOPRIM domain Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Pfam PF01751 Toprim domain 4 140 1.1E-9 T 12-10-2018 IPR006171 TOPRIM domain Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Gene3D G3DSA:1.10.460.10 169 623 3.2E-157 T 12-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 SUPERFAMILY SSF47592 904 972 3.92E-23 T 12-10-2018 IPR036885 SWIB/MDM2 domain superfamily Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 TIGRFAM TIGR01056 topB: DNA topoisomerase III 3 637 6.5E-162 T 12-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 SMART SM00151 903 973 2.1E-27 T 12-10-2018 IPR019835 SWIB domain Reactome: R-HSA-3214858|Reactome: R-HSA-8939243 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 SMART SM00437 287 575 5.5E-71 T 12-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 SMART SM00436 135 230 1.1E-23 T 12-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Gene3D G3DSA:1.10.245.10 901 973 2.3E-23 T 12-10-2018 IPR036885 SWIB/MDM2 domain superfamily Alide_4198 312e335aa6e643c65c58fcc6c4053a0a 973 Gene3D G3DSA:1.10.290.10 296 428 3.2E-157 T 12-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Alide_3675 d0d93748a7d48da788c076aa9e07358d 393 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 337 361 - T 12-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3675 d0d93748a7d48da788c076aa9e07358d 393 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 16 382 26.104 T 12-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3675 d0d93748a7d48da788c076aa9e07358d 393 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 22 379 7.5E-122 T 12-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3675 d0d93748a7d48da788c076aa9e07358d 393 Pfam PF01098 Cell cycle protein 26 379 5.1E-94 T 12-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3462 21aeba3159916ca1c27b4ceb98e66cf0 245 Gene3D G3DSA:3.40.190.10 14 225 4.4E-23 T 12-10-2018 Alide_3462 21aeba3159916ca1c27b4ceb98e66cf0 245 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 229 6.8E-19 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_3462 21aeba3159916ca1c27b4ceb98e66cf0 245 Gene3D G3DSA:3.40.190.10 102 194 4.4E-23 T 12-10-2018 Alide_3462 21aeba3159916ca1c27b4ceb98e66cf0 245 SMART SM00062 16 236 4.3E-23 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_3462 21aeba3159916ca1c27b4ceb98e66cf0 245 SUPERFAMILY SSF53850 18 233 2.62E-31 T 12-10-2018 Alide_0532 ea941bf9f6d14da065f958bd149547b5 85 SUPERFAMILY SSF47027 4 83 8.24E-27 T 12-10-2018 IPR035984 Acyl-CoA binding protein superfamily GO:0000062 Alide_0532 ea941bf9f6d14da065f958bd149547b5 85 PRINTS PR00689 Acyl-coA-binding protein signature 22 40 2.2E-17 T 12-10-2018 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 Alide_0532 ea941bf9f6d14da065f958bd149547b5 85 PRINTS PR00689 Acyl-coA-binding protein signature 45 60 2.2E-17 T 12-10-2018 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 Alide_0532 ea941bf9f6d14da065f958bd149547b5 85 PRINTS PR00689 Acyl-coA-binding protein signature 66 83 2.2E-17 T 12-10-2018 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 Alide_0532 ea941bf9f6d14da065f958bd149547b5 85 PRINTS PR00689 Acyl-coA-binding protein signature 5 20 2.2E-17 T 12-10-2018 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 Alide_0532 ea941bf9f6d14da065f958bd149547b5 85 Pfam PF00887 Acyl CoA binding protein 6 83 2.9E-25 T 12-10-2018 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 Alide_0532 ea941bf9f6d14da065f958bd149547b5 85 Gene3D G3DSA:1.20.80.10 1 85 2.6E-31 T 12-10-2018 IPR014352 FERM/acyl-CoA-binding protein superfamily Alide_2193 6b5b6ad3990ca83e6a9125cbe0205457 276 ProSitePatterns PS00194 Thioredoxin family active site. 163 181 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Alide_2193 6b5b6ad3990ca83e6a9125cbe0205457 276 Pfam PF08534 Redoxin 140 255 1.3E-11 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Alide_2193 6b5b6ad3990ca83e6a9125cbe0205457 276 SUPERFAMILY SSF52833 140 269 6.46E-31 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2193 6b5b6ad3990ca83e6a9125cbe0205457 276 Gene3D G3DSA:3.40.30.10 130 269 4.7E-29 T 12-10-2018 Alide_1856 b1f9c6bcafc9c3a4afc2f181049524ce 240 PRINTS PR01021 OMPA domain signature 134 156 1.9E-20 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_1856 b1f9c6bcafc9c3a4afc2f181049524ce 240 PRINTS PR01021 OMPA domain signature 179 195 1.9E-20 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_1856 b1f9c6bcafc9c3a4afc2f181049524ce 240 PRINTS PR01021 OMPA domain signature 164 179 1.9E-20 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_1856 b1f9c6bcafc9c3a4afc2f181049524ce 240 Pfam PF00691 OmpA family 133 228 5.5E-25 T 12-10-2018 IPR006665 OmpA-like domain Alide_1856 b1f9c6bcafc9c3a4afc2f181049524ce 240 Gene3D G3DSA:3.30.1330.60 99 240 3.4E-44 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_1856 b1f9c6bcafc9c3a4afc2f181049524ce 240 SUPERFAMILY SSF103088 126 234 1.44E-38 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_1305 137482ba50dc149831d3aedabb8e9bef 247 SMART SM00448 1 115 8.2E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1305 137482ba50dc149831d3aedabb8e9bef 247 Pfam PF00072 Response regulator receiver domain 3 115 5.1E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1305 137482ba50dc149831d3aedabb8e9bef 247 Gene3D G3DSA:3.40.50.2300 1 127 8.3E-31 T 12-10-2018 Alide_1305 137482ba50dc149831d3aedabb8e9bef 247 SUPERFAMILY SSF52172 1 122 2.28E-30 T 12-10-2018 IPR011006 CheY-like superfamily Alide_1305 137482ba50dc149831d3aedabb8e9bef 247 Pfam PF04397 LytTr DNA-binding domain 146 245 2.5E-21 T 12-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 Alide_1305 137482ba50dc149831d3aedabb8e9bef 247 Gene3D G3DSA:2.40.50.40 137 203 2.8E-10 T 12-10-2018 Alide_1305 137482ba50dc149831d3aedabb8e9bef 247 SMART SM00850 145 246 5.2E-29 T 12-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 Alide_1047 1db88a913cbb1e30cf24509b01c796b2 159 Gene3D G3DSA:3.40.50.12280 1 158 5.6E-79 T 12-10-2018 Alide_1047 1db88a913cbb1e30cf24509b01c796b2 159 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 36 145 1.3E-22 T 12-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1047 1db88a913cbb1e30cf24509b01c796b2 159 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 3 151 42.735 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1047 1db88a913cbb1e30cf24509b01c796b2 159 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 10 152 2.1E-77 T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1047 1db88a913cbb1e30cf24509b01c796b2 159 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 12-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1047 1db88a913cbb1e30cf24509b01c796b2 159 SUPERFAMILY SSF56770 8 154 5.76E-67 T 12-10-2018 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 SUPERFAMILY SSF55874 437 599 8.91E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 Gene3D G3DSA:1.10.287.130 377 439 3.7E-15 T 12-10-2018 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 552 3.7E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 580 593 3.7E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 538 3.7E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 571 3.7E-11 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 595 4.4E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 SMART SM00387 483 596 4.1E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 Gene3D G3DSA:3.40.190.10 31 110 3.6E-16 T 12-10-2018 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 Pfam PF00512 His Kinase A (phospho-acceptor) domain 373 439 1.5E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 29 274 2.3E-34 T 12-10-2018 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 Gene3D G3DSA:3.40.190.10 113 217 3.6E-16 T 12-10-2018 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 SMART SM00388 372 442 2.3E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 SUPERFAMILY SSF47384 369 439 1.51E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 SUPERFAMILY SSF53850 41 263 1.55E-11 T 12-10-2018 Alide_0967 17a118a3ee8ae57a6493e7e4a4e2752a 606 Gene3D G3DSA:3.30.565.10 444 602 2.4E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0448 954f11cb90f944e3b083eada6b7ad070 155 Gene3D G3DSA:3.10.450.50 14 155 6.6E-32 T 12-10-2018 Alide_0448 954f11cb90f944e3b083eada6b7ad070 155 Pfam PF13474 SnoaL-like domain 28 138 5.8E-12 T 12-10-2018 IPR037401 SnoaL-like domain Alide_0448 954f11cb90f944e3b083eada6b7ad070 155 SUPERFAMILY SSF54427 22 138 4.05E-29 T 12-10-2018 IPR032710 NTF2-like domain superfamily Alide_4062 0f8a49d74ffcc27385fc8bfcc6060f37 229 Gene3D G3DSA:1.10.357.10 15 208 4.8E-31 T 12-10-2018 Alide_4062 0f8a49d74ffcc27385fc8bfcc6060f37 229 ProSitePatterns PS01081 TetR-type HTH domain signature. 41 71 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Alide_4062 0f8a49d74ffcc27385fc8bfcc6060f37 229 Pfam PF00440 Bacterial regulatory proteins, tetR family 29 75 1.9E-18 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_4062 0f8a49d74ffcc27385fc8bfcc6060f37 229 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 50 73 6.1E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_4062 0f8a49d74ffcc27385fc8bfcc6060f37 229 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 42 6.1E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_4062 0f8a49d74ffcc27385fc8bfcc6060f37 229 SUPERFAMILY SSF46689 16 80 1.64E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4071 6588348f9c3df659c682f67511aa5d24 172 Gene3D G3DSA:3.90.950.20 5 170 4.3E-62 T 12-10-2018 IPR036653 CinA-like, C-terminal Alide_4071 6588348f9c3df659c682f67511aa5d24 172 SUPERFAMILY SSF142433 20 170 1.44E-55 T 12-10-2018 IPR036653 CinA-like, C-terminal Alide_4071 6588348f9c3df659c682f67511aa5d24 172 Pfam PF02464 Competence-damaged protein 22 169 2.0E-58 T 12-10-2018 IPR008136 CinA, C-terminal Alide_4071 6588348f9c3df659c682f67511aa5d24 172 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 24 167 1.6E-44 T 12-10-2018 IPR008136 CinA, C-terminal Alide_2805 0df7b70ea9de594f758eb995b347391b 522 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 12-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 Gene3D G3DSA:3.40.30.80 1 200 2.4E-60 T 12-10-2018 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 3.2E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 3.2E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 214 236 3.2E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 478 496 3.2E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 3.2E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 3.2E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 261 3.2E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 276 3.2E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 3.2E-65 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 1.4E-39 T 12-10-2018 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 215 234 1.4E-39 T 12-10-2018 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 468 490 1.4E-39 T 12-10-2018 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 1.4E-39 T 12-10-2018 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 1.4E-39 T 12-10-2018 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 517 4.1E-237 T 12-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 Gene3D G3DSA:3.50.50.60 327 450 9.0E-112 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2805 0df7b70ea9de594f758eb995b347391b 522 PIRSF PIRSF000238 1 521 1.3E-256 T 12-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 Alide_2805 0df7b70ea9de594f758eb995b347391b 522 SUPERFAMILY SSF52833 104 197 1.03E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2805 0df7b70ea9de594f758eb995b347391b 522 Gene3D G3DSA:3.50.50.60 213 508 9.0E-112 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2805 0df7b70ea9de594f758eb995b347391b 522 SUPERFAMILY SSF52833 1 102 2.12E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2805 0df7b70ea9de594f758eb995b347391b 522 Pfam PF13192 Thioredoxin domain 120 194 1.1E-9 T 12-10-2018 IPR012336 Thioredoxin-like fold Alide_2805 0df7b70ea9de594f758eb995b347391b 522 SUPERFAMILY SSF51905 202 514 8.25E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2805 0df7b70ea9de594f758eb995b347391b 522 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 213 502 6.0E-44 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_2370 86e5e5460a32152c679aeaa4f2a4ada5 419 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 418 4.3E-123 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_2370 86e5e5460a32152c679aeaa4f2a4ada5 419 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 416 2.1E-107 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Alide_2370 86e5e5460a32152c679aeaa4f2a4ada5 419 PIRSF PIRSF006066 1 419 8.5E-122 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 SUPERFAMILY SSF52540 167 413 9.81E-72 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 Gene3D G3DSA:1.10.8.60 345 421 7.9E-30 T 12-10-2018 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 Pfam PF06480 FtsH Extracellular 23 106 3.9E-9 T 12-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 SMART SM00382 206 345 2.8E-25 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 SUPERFAMILY SSF140990 424 624 9.29E-77 T 12-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 122 613 8.5E-240 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 Gene3D G3DSA:3.40.50.300 158 344 1.2E-70 T 12-10-2018 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 342 1.7E-45 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 627 37.23 T 12-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 Gene3D G3DSA:1.20.58.760 424 622 6.5E-75 T 12-10-2018 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 ProSitePatterns PS00674 AAA-protein family signature. 313 331 - T 12-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 Gene3D G3DSA:2.40.50.920 45 121 4.0E-6 T 12-10-2018 Alide_2498 80c539f6b0e7356471be2761e5c7a9fc 653 Pfam PF01434 Peptidase family M41 404 612 1.0E-82 T 12-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Alide_3038 9b054e091319d6083fb0a3f0b819a4f2 298 Gene3D G3DSA:1.10.260.40 12 106 1.3E-13 T 12-10-2018 Alide_3038 9b054e091319d6083fb0a3f0b819a4f2 298 Pfam PF13413 Helix-turn-helix domain 25 85 3.1E-13 T 12-10-2018 Alide_3038 9b054e091319d6083fb0a3f0b819a4f2 298 Pfam PF13464 Domain of unknown function (DUF4115) 224 297 4.7E-19 T 12-10-2018 IPR025194 Domain of unknown function DUF4115 Alide_2928 c252a72b68e806e63f923e3ccdcf418b 310 PIRSF PIRSF000089 1 310 1.5E-103 T 12-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Alide_2928 c252a72b68e806e63f923e3ccdcf418b 310 SUPERFAMILY SSF52402 3 186 6.14E-55 T 12-10-2018 Alide_2928 c252a72b68e806e63f923e3ccdcf418b 310 SMART SM00893 3 182 2.0E-56 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_2928 c252a72b68e806e63f923e3ccdcf418b 310 SUPERFAMILY SSF52467 189 309 3.92E-44 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_2928 c252a72b68e806e63f923e3ccdcf418b 310 Pfam PF01012 Electron transfer flavoprotein domain 4 169 4.6E-36 T 12-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Alide_2928 c252a72b68e806e63f923e3ccdcf418b 310 Gene3D G3DSA:3.40.50.1220 184 310 3.9E-55 T 12-10-2018 Alide_2928 c252a72b68e806e63f923e3ccdcf418b 310 Gene3D G3DSA:3.40.50.620 3 183 2.5E-54 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2928 c252a72b68e806e63f923e3ccdcf418b 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 1.3E-34 T 12-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Alide_2928 c252a72b68e806e63f923e3ccdcf418b 310 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 12-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 Gene3D G3DSA:3.40.47.10 126 391 1.4E-130 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 397 1.4E-116 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 PIRSF PIRSF000429 1 399 4.5E-110 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 Pfam PF02803 Thiolase, C-terminal domain 272 397 2.1E-43 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 SUPERFAMILY SSF53901 273 398 3.84E-39 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 Pfam PF00108 Thiolase, N-terminal domain 5 263 6.3E-55 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 SUPERFAMILY SSF53901 1 268 6.16E-65 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 ProSitePatterns PS00099 Thiolases active site. 380 393 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 Alide_3761 d3bcaf1b084a63adeadf92b4ecf5dfb4 399 Gene3D G3DSA:3.40.47.10 4 277 1.4E-130 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3806 2a8003693e04f615c7a51960931024b9 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 290 5.8E-33 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_2462 42888062691e54fd00d52795fb40381f 283 SUPERFAMILY SSF54675 8 107 5.49E-22 T 12-10-2018 Alide_2462 42888062691e54fd00d52795fb40381f 283 Gene3D G3DSA:3.90.1170.20 11 275 7.2E-68 T 12-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 Alide_2462 42888062691e54fd00d52795fb40381f 283 Gene3D G3DSA:3.20.20.70 124 271 7.2E-68 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2462 42888062691e54fd00d52795fb40381f 283 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 22 106 1.1E-18 T 12-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Alide_2462 42888062691e54fd00d52795fb40381f 283 SUPERFAMILY SSF51690 108 278 1.88E-38 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Alide_2462 42888062691e54fd00d52795fb40381f 283 PIRSF PIRSF006250 3 282 6.4E-56 T 12-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 Alide_2462 42888062691e54fd00d52795fb40381f 283 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 108 276 1.3E-31 T 12-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 Alide_2462 42888062691e54fd00d52795fb40381f 283 TIGRFAM TIGR01334 modD: modD protein 5 279 8.3E-65 T 12-10-2018 IPR006242 Putative pyrophosphorylase ModD GO:0016763 Alide_4497 e229aec05b14aa8f8360b807c386ce8a 78 ProDom PD007968 PLASMID MERE URF-1 RESISTANCE MERCURY MERCURIC DELTA URF1 PRECURSOR TNIB 18 78 6.0E-28 T 12-10-2018 IPR007746 Broad mercury transporter MerE GO:0015097|GO:0015694|GO:0016020 Alide_4497 e229aec05b14aa8f8360b807c386ce8a 78 Pfam PF05052 MerE protein 1 75 1.5E-48 T 12-10-2018 IPR007746 Broad mercury transporter MerE GO:0015097|GO:0015694|GO:0016020 Alide_3209 db5bae8ad22d6d24c93c240b509a918c 410 SMART SM00267 231 405 1.8E-62 T 12-10-2018 IPR000160 GGDEF domain Alide_3209 db5bae8ad22d6d24c93c240b509a918c 410 SUPERFAMILY SSF55073 247 400 1.02E-45 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_3209 db5bae8ad22d6d24c93c240b509a918c 410 SMART SM00304 176 229 1.5E-4 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_3209 db5bae8ad22d6d24c93c240b509a918c 410 Gene3D G3DSA:3.30.70.270 236 407 1.2E-56 T 12-10-2018 Alide_3209 db5bae8ad22d6d24c93c240b509a918c 410 Pfam PF17152 Periplasmic sensor domain 39 138 2.4E-22 T 12-10-2018 IPR033417 Periplasmic sensor domain CHASE8 Alide_3209 db5bae8ad22d6d24c93c240b509a918c 410 Pfam PF00990 Diguanylate cyclase, GGDEF domain 242 398 1.7E-45 T 12-10-2018 IPR000160 GGDEF domain Alide_3209 db5bae8ad22d6d24c93c240b509a918c 410 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 238 401 5.7E-44 T 12-10-2018 IPR000160 GGDEF domain Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 Pfam PF00285 Citrate synthase, C-terminal domain 19 367 5.9E-109 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 18 385 2.2E-154 T 12-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 PRINTS PR00143 Citrate synthase signature 261 281 2.3E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 PRINTS PR00143 Citrate synthase signature 136 149 2.3E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 PRINTS PR00143 Citrate synthase signature 208 236 2.3E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 PRINTS PR00143 Citrate synthase signature 186 201 2.3E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 PRINTS PR00143 Citrate synthase signature 338 352 2.3E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 PRINTS PR00143 Citrate synthase signature 318 334 2.3E-34 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 Gene3D G3DSA:1.10.580.10 39 365 5.7E-123 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 ProSitePatterns PS00480 Citrate synthase signature. 268 280 - T 12-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 PIRSF PIRSF001369 11 386 4.0E-107 T 12-10-2018 IPR024176 Citrate synthase, bacterial-type Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 Gene3D G3DSA:1.10.230.10 234 332 5.7E-123 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain Alide_1904 85e084da8ef17ccc46652ae8e50e1a72 386 SUPERFAMILY SSF48256 18 385 9.29E-121 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 SUPERFAMILY SSF52402 236 622 3.07E-86 T 12-10-2018 Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 SUPERFAMILY SSF56235 1 226 6.52E-64 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 Gene3D G3DSA:3.40.50.620 448 632 1.2E-26 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 Gene3D G3DSA:3.40.50.620 222 409 1.5E-41 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 Gene3D G3DSA:3.60.20.10 2 185 1.4E-66 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 PIRSF PIRSF001589 1 630 3.0E-172 T 12-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 Pfam PF00733 Asparagine synthase 243 627 4.0E-97 T 12-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 Pfam PF13537 Glutamine amidotransferase domain 48 167 6.4E-50 T 12-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 562 4.0E-145 T 12-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Alide_0745 3cd4e7773d2a80cb575712de7f98e543 636 TIGRFAM TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1 1 627 0.0 T 12-10-2018 IPR017539 Exosortase 1 system-associated amidotransferase 1 Alide_2559 14d7bf3e0e5bf4e81902eeb0ad220cfb 298 PIRSF PIRSF000103 1 298 7.0E-80 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_2559 14d7bf3e0e5bf4e81902eeb0ad220cfb 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 164 5.7E-51 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Alide_2559 14d7bf3e0e5bf4e81902eeb0ad220cfb 298 SUPERFAMILY SSF48179 166 296 2.04E-39 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_2559 14d7bf3e0e5bf4e81902eeb0ad220cfb 298 Gene3D G3DSA:1.10.1040.10 167 298 1.7E-44 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_2559 14d7bf3e0e5bf4e81902eeb0ad220cfb 298 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 5 294 2.9E-126 T 12-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 Alide_2559 14d7bf3e0e5bf4e81902eeb0ad220cfb 298 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 294 3.8E-35 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Alide_2559 14d7bf3e0e5bf4e81902eeb0ad220cfb 298 Gene3D G3DSA:3.40.50.720 1 165 2.3E-53 T 12-10-2018 Alide_2559 14d7bf3e0e5bf4e81902eeb0ad220cfb 298 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_2559 14d7bf3e0e5bf4e81902eeb0ad220cfb 298 SUPERFAMILY SSF51735 1 165 1.46E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0539 2be2fbe0792b4818c756cc2dd3c8e28e 329 Gene3D G3DSA:3.40.190.150 30 319 3.0E-93 T 12-10-2018 Alide_0539 2be2fbe0792b4818c756cc2dd3c8e28e 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 324 1.5E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0539 2be2fbe0792b4818c756cc2dd3c8e28e 329 PIRSF PIRSF017082 3 329 1.5E-67 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0539 2be2fbe0792b4818c756cc2dd3c8e28e 329 SUPERFAMILY SSF53850 113 285 2.28E-8 T 12-10-2018 Alide_0539 2be2fbe0792b4818c756cc2dd3c8e28e 329 Gene3D G3DSA:3.40.190.10 126 251 3.0E-93 T 12-10-2018 Alide_1277 3e927a28f07ff2da98091ee627f4302c 175 Pfam PF00959 Phage lysozyme 72 165 1.1E-12 T 12-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 Alide_1277 3e927a28f07ff2da98091ee627f4302c 175 Gene3D G3DSA:1.10.530.40 1 174 8.0E-36 T 12-10-2018 Alide_1277 3e927a28f07ff2da98091ee627f4302c 175 SUPERFAMILY SSF53955 6 174 7.16E-36 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_1125 96d608dd1975946ddb833a120b668b62 365 SMART SM00829 14 363 6.8E-5 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_1125 96d608dd1975946ddb833a120b668b62 365 SUPERFAMILY SSF51735 157 328 2.37E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1125 96d608dd1975946ddb833a120b668b62 365 Pfam PF00107 Zinc-binding dehydrogenase 194 297 3.1E-27 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_1125 96d608dd1975946ddb833a120b668b62 365 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Alide_1125 96d608dd1975946ddb833a120b668b62 365 Gene3D G3DSA:3.40.50.720 172 307 2.2E-103 T 12-10-2018 Alide_1125 96d608dd1975946ddb833a120b668b62 365 SUPERFAMILY SSF50129 5 191 5.78E-39 T 12-10-2018 IPR011032 GroES-like superfamily Alide_1125 96d608dd1975946ddb833a120b668b62 365 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 147 1.9E-21 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_1125 96d608dd1975946ddb833a120b668b62 365 Gene3D G3DSA:3.90.180.10 24 348 2.2E-103 T 12-10-2018 Alide_4069 c407519340001d95d3e882e69193d8b0 396 Pfam PF00871 Acetokinase family 5 386 1.1E-103 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 PIRSF PIRSF000722 1 396 4.2E-126 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 PRINTS PR00471 Acetate kinase family signature 175 188 5.2E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 PRINTS PR00471 Acetate kinase family signature 374 386 5.2E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 PRINTS PR00471 Acetate kinase family signature 5 16 5.2E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 PRINTS PR00471 Acetate kinase family signature 300 313 5.2E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 PRINTS PR00471 Acetate kinase family signature 204 225 5.2E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 PRINTS PR00471 Acetate kinase family signature 322 338 5.2E-32 T 12-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 SUPERFAMILY SSF53067 4 197 9.06E-54 T 12-10-2018 Alide_4069 c407519340001d95d3e882e69193d8b0 396 SUPERFAMILY SSF53067 163 393 1.21E-69 T 12-10-2018 Alide_4069 c407519340001d95d3e882e69193d8b0 396 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 12-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 Gene3D G3DSA:3.30.420.40 198 395 3.2E-65 T 12-10-2018 Alide_4069 c407519340001d95d3e882e69193d8b0 396 Hamap MF_00020 Acetate kinase [ackA]. 1 396 149.214 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 TIGRFAM TIGR00016 ackA: acetate kinase 2 392 1.4E-104 T 12-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Alide_4069 c407519340001d95d3e882e69193d8b0 396 Gene3D G3DSA:3.30.420.40 2 195 5.6E-56 T 12-10-2018 Alide_0509 62556c2c34d92c8e6ca929b87c9ce8c7 507 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 435 3.0E-28 T 12-10-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Alide_0509 62556c2c34d92c8e6ca929b87c9ce8c7 507 SUPERFAMILY SSF54862 1 494 1.88E-178 T 12-10-2018 Alide_0509 62556c2c34d92c8e6ca929b87c9ce8c7 507 Gene3D G3DSA:1.10.3650.10 358 434 1.4E-28 T 12-10-2018 IPR038262 Nitrate reductase beta, C-terminal domain superfamily KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Alide_0509 62556c2c34d92c8e6ca929b87c9ce8c7 507 Pfam PF13247 4Fe-4S dicluster domain 175 271 9.2E-38 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_0509 62556c2c34d92c8e6ca929b87c9ce8c7 507 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 489 4.9E-294 T 12-10-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 Alide_0509 62556c2c34d92c8e6ca929b87c9ce8c7 507 Gene3D G3DSA:3.30.70.20 1 303 2.8E-102 T 12-10-2018 Alide_1324 ae4c8992b37d58e3d653eaab5c6192f7 309 Pfam PF03466 LysR substrate binding domain 90 297 6.5E-29 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1324 ae4c8992b37d58e3d653eaab5c6192f7 309 SUPERFAMILY SSF46785 4 109 1.56E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1324 ae4c8992b37d58e3d653eaab5c6192f7 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 5.8E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1324 ae4c8992b37d58e3d653eaab5c6192f7 309 SUPERFAMILY SSF53850 91 301 1.32E-34 T 12-10-2018 Alide_1324 ae4c8992b37d58e3d653eaab5c6192f7 309 Gene3D G3DSA:1.10.10.10 4 88 3.6E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1324 ae4c8992b37d58e3d653eaab5c6192f7 309 Gene3D G3DSA:3.40.190.290 93 304 2.8E-31 T 12-10-2018 Alide_4096 f726b9c647429a5d92a5d49777a14be1 262 Pfam PF02596 Uncharacterised ArCR, COG2043 17 222 3.3E-32 T 12-10-2018 IPR003748 Protein of unknown function DUF169 Alide_2267 d8ac78cf9356d0fad045063b5f5a74e9 526 Gene3D G3DSA:3.30.300.30 420 525 9.4E-32 T 12-10-2018 Alide_2267 d8ac78cf9356d0fad045063b5f5a74e9 526 SUPERFAMILY SSF56801 9 519 8.11E-140 T 12-10-2018 Alide_2267 d8ac78cf9356d0fad045063b5f5a74e9 526 Gene3D G3DSA:3.40.50.12780 19 419 3.7E-97 T 12-10-2018 Alide_2267 d8ac78cf9356d0fad045063b5f5a74e9 526 Pfam PF00501 AMP-binding enzyme 22 423 1.6E-89 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_2267 d8ac78cf9356d0fad045063b5f5a74e9 526 Pfam PF13193 AMP-binding enzyme C-terminal domain 432 507 1.1E-21 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_2267 d8ac78cf9356d0fad045063b5f5a74e9 526 ProSitePatterns PS00455 Putative AMP-binding domain signature. 171 182 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_4241 f11575d1779431ab5202a8a273113bab 271 SUPERFAMILY SSF56317 1 269 1.2E-78 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Alide_4241 f11575d1779431ab5202a8a273113bab 271 Gene3D G3DSA:3.60.110.10 1 270 9.5E-88 T 12-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Alide_4241 f11575d1779431ab5202a8a273113bab 271 Pfam PF00795 Carbon-nitrogen hydrolase 2 259 2.1E-51 T 12-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Alide_4241 f11575d1779431ab5202a8a273113bab 271 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 154 174 - T 12-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site Alide_3195 cf937376a78cf862feb592b7cf6fc57e 339 Pfam PF01479 S4 domain 33 79 5.3E-5 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3195 cf937376a78cf862feb592b7cf6fc57e 339 SMART SM00363 33 91 7.7E-5 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3195 cf937376a78cf862feb592b7cf6fc57e 339 Pfam PF00849 RNA pseudouridylate synthase 111 272 2.4E-29 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3195 cf937376a78cf862feb592b7cf6fc57e 339 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 29 332 1.9E-77 T 12-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3195 cf937376a78cf862feb592b7cf6fc57e 339 SUPERFAMILY SSF55120 97 333 8.0E-66 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3195 cf937376a78cf862feb592b7cf6fc57e 339 Gene3D G3DSA:3.10.290.10 22 90 1.2E-13 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Alide_3195 cf937376a78cf862feb592b7cf6fc57e 339 SUPERFAMILY SSF55174 32 83 3.34E-7 T 12-10-2018 Alide_3195 cf937376a78cf862feb592b7cf6fc57e 339 Gene3D G3DSA:3.30.2350.10 104 336 2.0E-75 T 12-10-2018 Alide_3195 cf937376a78cf862feb592b7cf6fc57e 339 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 150 164 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3199 86d041f67b95c5f7dde5a6028279a3f2 281 Gene3D G3DSA:3.30.1130.10 143 281 3.5E-57 T 12-10-2018 Alide_3199 86d041f67b95c5f7dde5a6028279a3f2 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 15 117 2.1E-44 T 12-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Alide_3199 86d041f67b95c5f7dde5a6028279a3f2 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 155.115 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Alide_3199 86d041f67b95c5f7dde5a6028279a3f2 281 SUPERFAMILY SSF55620 184 265 1.41E-7 T 12-10-2018 Alide_3199 86d041f67b95c5f7dde5a6028279a3f2 281 Gene3D G3DSA:3.30.1130.10 15 136 6.6E-41 T 12-10-2018 Alide_3199 86d041f67b95c5f7dde5a6028279a3f2 281 Pfam PF14489 QueF-like protein 194 268 1.8E-24 T 12-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Alide_3199 86d041f67b95c5f7dde5a6028279a3f2 281 TIGRFAM TIGR03138 QueF: queuine synthase 4 281 2.5E-118 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Alide_3199 86d041f67b95c5f7dde5a6028279a3f2 281 PIRSF PIRSF004750 1 281 7.5E-120 T 12-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 SMART SM00671 60 95 1.4 T 12-10-2018 IPR006597 Sel1-like repeat Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 SMART SM00671 96 131 2.6E-9 T 12-10-2018 IPR006597 Sel1-like repeat Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 Pfam PF08238 Sel1 repeat 69 95 0.61 T 12-10-2018 IPR006597 Sel1-like repeat Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 Pfam PF08238 Sel1 repeat 98 130 8.0E-6 T 12-10-2018 IPR006597 Sel1-like repeat Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 Gene3D G3DSA:1.25.40.10 49 151 1.3E-19 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 198 226 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 SUPERFAMILY SSF53955 164 295 2.82E-42 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 SUPERFAMILY SSF81901 62 135 1.44E-14 T 12-10-2018 Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 Pfam PF01464 Transglycosylase SLT domain 181 282 3.1E-28 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_1819 48fce3437ccd82b6ea77b6854a73b387 325 Gene3D G3DSA:1.10.530.10 172 303 1.9E-39 T 12-10-2018 Alide_4536 0672ae331a2b3561d8b9c110d8a93448 814 Gene3D G3DSA:1.10.8.730 506 620 1.5E-59 T 12-10-2018 Alide_4536 0672ae331a2b3561d8b9c110d8a93448 814 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 19 251 6.0E-37 T 12-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase Alide_4536 0672ae331a2b3561d8b9c110d8a93448 814 TIGRFAM TIGR02746 TraC-F-type: type-IV secretion system protein TraC 20 811 6.7E-212 T 12-10-2018 IPR014117 Type-IV secretion system protein TraC Alide_4536 0672ae331a2b3561d8b9c110d8a93448 814 SUPERFAMILY SSF52540 405 731 5.18E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4536 0672ae331a2b3561d8b9c110d8a93448 814 Gene3D G3DSA:3.40.50.300 442 735 1.5E-59 T 12-10-2018 Alide_4536 0672ae331a2b3561d8b9c110d8a93448 814 Pfam PF12846 AAA-like domain 455 718 3.8E-14 T 12-10-2018 Alide_1112 cdbd5976abe1ecefba5eedc129bf8d74 303 SUPERFAMILY SSF103481 196 286 3.79E-8 T 12-10-2018 Alide_1466 3a43d402a9fe000a79d318bedd1b3c4a 240 PIRSF PIRSF005650 3 240 7.2E-89 T 12-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 Alide_1466 3a43d402a9fe000a79d318bedd1b3c4a 240 SUPERFAMILY SSF53633 7 239 4.84E-71 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_1466 3a43d402a9fe000a79d318bedd1b3c4a 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 238 7.9E-98 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Alide_1466 3a43d402a9fe000a79d318bedd1b3c4a 240 Gene3D G3DSA:3.40.1160.10 2 240 9.4E-76 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_1466 3a43d402a9fe000a79d318bedd1b3c4a 240 Pfam PF00696 Amino acid kinase family 9 218 1.5E-30 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Alide_1466 3a43d402a9fe000a79d318bedd1b3c4a 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 6 239 44.03 T 12-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Alide_2113 f1a295a44ed9e4fbc61d174328f02cd2 277 SUPERFAMILY SSF55486 44 269 1.25E-32 T 12-10-2018 Alide_2113 f1a295a44ed9e4fbc61d174328f02cd2 277 Gene3D G3DSA:1.10.472.150 24 151 3.0E-41 T 12-10-2018 Alide_2113 f1a295a44ed9e4fbc61d174328f02cd2 277 Gene3D G3DSA:3.40.390.10 155 277 2.3E-33 T 12-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 Alide_2113 f1a295a44ed9e4fbc61d174328f02cd2 277 Pfam PF06167 Glucose-regulated metallo-peptidase M90 11 269 3.0E-83 T 12-10-2018 IPR010384 MtfA family Alide_3695 c4f946756301eba2ec23ffdd4c3281bf 360 Gene3D G3DSA:3.50.30.50 93 360 2.8E-8 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_3695 c4f946756301eba2ec23ffdd4c3281bf 360 SUPERFAMILY SSF102198 120 359 1.96E-11 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_3695 c4f946756301eba2ec23ffdd4c3281bf 360 Pfam PF04199 Putative cyclase 107 288 9.5E-13 T 12-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_2727 29b47a0484af433e7636783ad97cd249 494 Gene3D G3DSA:2.40.50.100 200 249 2.0E-24 T 12-10-2018 Alide_2727 29b47a0484af433e7636783ad97cd249 494 Gene3D G3DSA:2.40.30.170 250 323 2.0E-24 T 12-10-2018 Alide_2727 29b47a0484af433e7636783ad97cd249 494 Gene3D G3DSA:2.40.420.20 326 414 8.2E-22 T 12-10-2018 Alide_2727 29b47a0484af433e7636783ad97cd249 494 Gene3D G3DSA:2.40.50.100 130 176 2.9E-7 T 12-10-2018 Alide_2727 29b47a0484af433e7636783ad97cd249 494 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 116 320 4.8E-65 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_2727 29b47a0484af433e7636783ad97cd249 494 SUPERFAMILY SSF111369 201 326 1.07E-6 T 12-10-2018 Alide_2727 29b47a0484af433e7636783ad97cd249 494 Pfam PF11604 Copper binding periplasmic protein CusF 427 490 3.0E-22 T 12-10-2018 IPR021647 Copper binding periplasmic protein CusF Alide_2727 29b47a0484af433e7636783ad97cd249 494 Gene3D G3DSA:2.40.50.320 420 494 4.1E-21 T 12-10-2018 Alide_2727 29b47a0484af433e7636783ad97cd249 494 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 218 394 6.3E-36 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_3314 469abb8ce474e955e783bc09df604a1f 597 SUPERFAMILY SSF56935 17 593 3.36E-113 T 12-10-2018 Alide_3314 469abb8ce474e955e783bc09df604a1f 597 Gene3D G3DSA:2.40.170.20 146 594 3.7E-105 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Alide_3314 469abb8ce474e955e783bc09df604a1f 597 Pfam PF00593 TonB dependent receptor 193 593 3.9E-39 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_3314 469abb8ce474e955e783bc09df604a1f 597 Gene3D G3DSA:2.170.130.10 13 142 1.9E-36 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_3314 469abb8ce474e955e783bc09df604a1f 597 Pfam PF07715 TonB-dependent Receptor Plug Domain 32 137 3.6E-27 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_4365 f49bc539b24e51a9d36bef2069fe480d 377 Pfam PF05230 MASE2 domain 28 105 1.5E-13 T 12-10-2018 IPR007894 MASE2 Alide_4365 f49bc539b24e51a9d36bef2069fe480d 377 SUPERFAMILY SSF55073 209 365 2.04E-50 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_4365 f49bc539b24e51a9d36bef2069fe480d 377 SMART SM00267 193 365 2.8E-64 T 12-10-2018 IPR000160 GGDEF domain Alide_4365 f49bc539b24e51a9d36bef2069fe480d 377 Gene3D G3DSA:3.30.70.270 198 370 1.9E-60 T 12-10-2018 Alide_4365 f49bc539b24e51a9d36bef2069fe480d 377 Pfam PF00990 Diguanylate cyclase, GGDEF domain 204 361 7.9E-48 T 12-10-2018 IPR000160 GGDEF domain Alide_4365 f49bc539b24e51a9d36bef2069fe480d 377 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 201 364 2.4E-52 T 12-10-2018 IPR000160 GGDEF domain Alide_3067 e92eab19e58e4cfc40026324b089ff65 268 Gene3D G3DSA:3.40.50.2300 2 138 8.5E-24 T 12-10-2018 Alide_3067 e92eab19e58e4cfc40026324b089ff65 268 SUPERFAMILY SSF52172 3 134 6.69E-26 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3067 e92eab19e58e4cfc40026324b089ff65 268 SMART SM00850 172 268 2.4E-27 T 12-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 Alide_3067 e92eab19e58e4cfc40026324b089ff65 268 Gene3D G3DSA:2.40.50.40 165 231 4.2E-9 T 12-10-2018 Alide_3067 e92eab19e58e4cfc40026324b089ff65 268 Pfam PF04397 LytTr DNA-binding domain 173 267 6.0E-24 T 12-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 Alide_3067 e92eab19e58e4cfc40026324b089ff65 268 Pfam PF00072 Response regulator receiver domain 6 119 1.8E-16 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3067 e92eab19e58e4cfc40026324b089ff65 268 SMART SM00448 3 120 1.3E-20 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0796 736f7dfd071f56fe19dafaa1298ccc51 325 Pfam PF03934 Type II secretion system (T2SS), protein K 32 306 1.1E-59 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Alide_0796 736f7dfd071f56fe19dafaa1298ccc51 325 PIRSF PIRSF002786 2 317 5.7E-55 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Alide_0796 736f7dfd071f56fe19dafaa1298ccc51 325 SUPERFAMILY SSF158544 127 214 9.94E-5 T 12-10-2018 IPR038072 GspK, central domain superfamily Alide_0796 736f7dfd071f56fe19dafaa1298ccc51 325 SUPERFAMILY SSF54523 48 314 5.65E-5 T 12-10-2018 Alide_1561 a7ada0789d585bd6b59e36545409fc5b 262 Pfam PF00005 ABC transporter 28 182 3.8E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1561 a7ada0789d585bd6b59e36545409fc5b 262 SMART SM00382 35 229 1.0E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1561 a7ada0789d585bd6b59e36545409fc5b 262 Gene3D G3DSA:3.40.50.300 9 261 8.5E-55 T 12-10-2018 Alide_1561 a7ada0789d585bd6b59e36545409fc5b 262 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 251 8.8E-7 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_1561 a7ada0789d585bd6b59e36545409fc5b 262 SUPERFAMILY SSF52540 10 251 2.66E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0273 817df215a4a9a4b533bbf49ff76ebb7d 326 PIRSF PIRSF017082 1 326 1.7E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0273 817df215a4a9a4b533bbf49ff76ebb7d 326 SUPERFAMILY SSF53850 110 283 3.26E-12 T 12-10-2018 Alide_0273 817df215a4a9a4b533bbf49ff76ebb7d 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 322 3.6E-68 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0273 817df215a4a9a4b533bbf49ff76ebb7d 326 Gene3D G3DSA:3.40.190.10 129 251 1.8E-96 T 12-10-2018 Alide_0273 817df215a4a9a4b533bbf49ff76ebb7d 326 Gene3D G3DSA:3.40.190.150 34 316 1.8E-96 T 12-10-2018 Alide_2540 131300d67e1745798b4d4555e131142a 152 SUPERFAMILY SSF55961 10 145 2.28E-33 T 12-10-2018 Alide_2540 131300d67e1745798b4d4555e131142a 152 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 20 145 2.1E-17 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like Alide_2540 131300d67e1745798b4d4555e131142a 152 Gene3D G3DSA:3.30.530.20 3 150 3.5E-34 T 12-10-2018 IPR023393 START-like domain superfamily Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 Gene3D G3DSA:3.40.190.10 162 267 2.3E-58 T 12-10-2018 Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 Gene3D G3DSA:1.10.10.10 1 91 2.1E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.5E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 Pfam PF03466 LysR substrate binding domain 87 292 6.4E-41 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 SUPERFAMILY SSF53850 87 293 5.43E-39 T 12-10-2018 Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 Gene3D G3DSA:3.40.190.10 92 285 2.3E-58 T 12-10-2018 Alide_1967 19ff4d2ca5dd644ee54eda649cc806b1 297 SUPERFAMILY SSF46785 1 87 1.16E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2446 25a156f81d137f46a8c1e975aa51700a 375 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2446 25a156f81d137f46a8c1e975aa51700a 375 Pfam PF00005 ABC transporter 18 164 6.7E-37 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2446 25a156f81d137f46a8c1e975aa51700a 375 Pfam PF12857 TOBE-like domain 296 363 3.0E-19 T 12-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 Alide_2446 25a156f81d137f46a8c1e975aa51700a 375 SUPERFAMILY SSF50331 239 368 7.23E-6 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_2446 25a156f81d137f46a8c1e975aa51700a 375 SUPERFAMILY SSF52540 3 244 6.62E-89 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2446 25a156f81d137f46a8c1e975aa51700a 375 SMART SM00382 27 214 1.4E-21 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2446 25a156f81d137f46a8c1e975aa51700a 375 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 241 1.6E-120 T 12-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 Alide_2446 25a156f81d137f46a8c1e975aa51700a 375 Gene3D G3DSA:3.40.50.300 2 276 6.6E-84 T 12-10-2018 Alide_4478 61eb4e89acdeef6120037461bbbb1812 299 Gene3D G3DSA:2.60.40.2500 196 298 4.0E-8 T 12-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily Alide_4478 61eb4e89acdeef6120037461bbbb1812 299 Pfam PF03524 Conjugal transfer protein 74 297 1.4E-58 T 12-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX Alide_4478 61eb4e89acdeef6120037461bbbb1812 299 TIGRFAM TIGR02775 TrbG_Ti: P-type conjugative transfer protein TrbG 70 285 2.8E-92 T 12-10-2018 IPR014142 P-type conjugative transfer protein TrbG Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 Gene3D G3DSA:3.40.50.720 2 254 6.9E-64 T 12-10-2018 Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 Pfam PF00106 short chain dehydrogenase 8 204 3.1E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 3.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 3.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.9E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 SUPERFAMILY SSF51735 6 251 1.51E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 192 0.0076 T 12-10-2018 Alide_0141 ff565c38e5cf133a36d319f3634c85aa 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 822 943 1.9E-32 T 12-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 62 113 1.3E-7 T 12-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 Pfam PF13244 Domain of unknown function (DUF4040) 615 680 3.8E-20 T 12-10-2018 IPR025383 Domain of unknown function DUF4040 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 Pfam PF00361 Proton-conducting membrane transporter 126 405 3.0E-63 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 3.8E-35 T 12-10-2018 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 3.8E-35 T 12-10-2018 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 3.8E-35 T 12-10-2018 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 3.8E-35 T 12-10-2018 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 3.8E-35 T 12-10-2018 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 3.8E-35 T 12-10-2018 Alide_1548 082148c1122c45f9ff6e1a7dc9c1965a 986 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 150 171 3.8E-35 T 12-10-2018 Alide_2107 049707c22a6c292f46327973400d1503 440 Pfam PF07690 Major Facilitator Superfamily 34 399 1.1E-42 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_2107 049707c22a6c292f46327973400d1503 440 SUPERFAMILY SSF103473 17 439 1.1E-83 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_2107 049707c22a6c292f46327973400d1503 440 Gene3D G3DSA:1.20.1250.20 15 438 1.2E-82 T 12-10-2018 Alide_4308 87e5e49d35eda303ca459f318973eaba 515 Pfam PF01039 Carboxyl transferase domain 29 501 5.2E-88 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Alide_4308 87e5e49d35eda303ca459f318973eaba 515 Gene3D G3DSA:3.90.226.10 2 259 7.2E-61 T 12-10-2018 Alide_4308 87e5e49d35eda303ca459f318973eaba 515 SUPERFAMILY SSF52096 223 495 3.22E-67 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_4308 87e5e49d35eda303ca459f318973eaba 515 SUPERFAMILY SSF52096 2 263 3.32E-48 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_4308 87e5e49d35eda303ca459f318973eaba 515 Gene3D G3DSA:3.90.226.10 260 509 2.2E-72 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 Gene3D G3DSA:1.20.1640.10 8 513 0.0 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 SUPERFAMILY SSF82693 566 669 1.46E-34 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 Pfam PF00873 AcrB/AcrD/AcrF family 1 1025 0.0 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 Gene3D G3DSA:1.20.1640.10 514 1021 0.0 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1042 0.0 T 12-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 Gene3D G3DSA:3.30.70.1430 568 667 0.0 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 Gene3D G3DSA:3.30.70.1430 38 816 0.0 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 Gene3D G3DSA:3.30.70.1440 668 864 0.0 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 SUPERFAMILY SSF82714 721 805 6.15E-22 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 SUPERFAMILY SSF82714 182 272 3.27E-22 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 SUPERFAMILY SSF82693 38 131 1.83E-23 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 SUPERFAMILY SSF82693 671 855 2.51E-28 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 SUPERFAMILY SSF82866 831 1023 3.92E-43 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 Gene3D G3DSA:3.30.2090.10 720 808 0.0 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 SUPERFAMILY SSF82693 136 330 4.45E-28 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 SUPERFAMILY SSF82866 297 497 1.83E-49 T 12-10-2018 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 1.2E-106 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.2E-106 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 1.2E-106 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 1.2E-106 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 1.2E-106 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 1.2E-106 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.2E-106 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.2E-106 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0452 fea542e9636cb6faf7ae1a96b2dc863b 1051 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 1.2E-106 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 Gene3D G3DSA:3.30.565.10 342 493 1.2E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 Pfam PF00512 His Kinase A (phospho-acceptor) domain 270 337 9.2E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 SUPERFAMILY SSF47384 252 337 6.08E-18 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 492 8.1E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 SMART SM00388 269 337 8.9E-18 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 SUPERFAMILY SSF55874 327 492 7.6E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 SMART SM00387 383 493 1.4E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 493 1.3E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 474 1.3E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 435 1.3E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0732 accce4c8178bc641fcc7fdce45e83c99 493 Gene3D G3DSA:1.10.287.130 263 336 4.8E-19 T 12-10-2018 Alide_3525 708978cd4466624682d7cc01cc120e31 260 Gene3D G3DSA:1.10.12.10 202 260 7.7E-18 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3525 708978cd4466624682d7cc01cc120e31 260 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 101 121 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_3525 708978cd4466624682d7cc01cc120e31 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 260 2.9E-59 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3525 708978cd4466624682d7cc01cc120e31 260 Gene3D G3DSA:3.90.226.10 1 201 3.4E-64 T 12-10-2018 Alide_3525 708978cd4466624682d7cc01cc120e31 260 SUPERFAMILY SSF52096 2 259 1.99E-79 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0215 a11df1c4c1e52f78ad74e5b928bb4d29 90 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 12 85 2.4E-10 T 12-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB Alide_0215 a11df1c4c1e52f78ad74e5b928bb4d29 90 ProDom PD012561 TRBD PLASMID CONJUGAL TRANSFER PRECURSOR SIGNAL MATING FORMATION PROBABLE PAIR 15 86 3.0E-4 T 12-10-2018 Alide_0215 a11df1c4c1e52f78ad74e5b928bb4d29 90 PIRSF PIRSF017854 6 90 8.1E-35 T 12-10-2018 IPR016704 Conjugal transfer, TrbD Alide_0173 7246e428dcb24fb4b7234dd209c8d357 302 Gene3D G3DSA:3.40.190.10 100 289 7.0E-45 T 12-10-2018 Alide_0173 7246e428dcb24fb4b7234dd209c8d357 302 Gene3D G3DSA:3.40.190.10 168 262 7.0E-45 T 12-10-2018 Alide_0173 7246e428dcb24fb4b7234dd209c8d357 302 Gene3D G3DSA:1.10.10.10 7 93 8.5E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0173 7246e428dcb24fb4b7234dd209c8d357 302 Pfam PF03466 LysR substrate binding domain 95 292 9.1E-25 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0173 7246e428dcb24fb4b7234dd209c8d357 302 SUPERFAMILY SSF53850 96 294 8.69E-28 T 12-10-2018 Alide_0173 7246e428dcb24fb4b7234dd209c8d357 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 6.1E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0173 7246e428dcb24fb4b7234dd209c8d357 302 SUPERFAMILY SSF46785 6 87 3.31E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 Pfam PF10531 SLBB domain 440 489 3.0E-8 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 SUPERFAMILY SSF52833 39 185 5.48E-32 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 53 182 1.4E-23 T 12-10-2018 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 Gene3D G3DSA:1.10.10.1590 35 103 2.0E-9 T 12-10-2018 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 Gene3D G3DSA:1.20.1440.230 525 605 3.6E-22 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 SUPERFAMILY SSF140490 526 602 7.98E-24 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 Gene3D G3DSA:3.40.30.10 109 184 3.7E-9 T 12-10-2018 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 254 415 1.1E-37 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 527 603 2.1E-20 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 364 379 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 SMART SM00928 526 571 3.1E-20 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 Gene3D G3DSA:3.40.50.11540 259 428 1.1E-62 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 SUPERFAMILY SSF142019 222 436 1.96E-63 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 539 550 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 Gene3D G3DSA:3.10.20.600 429 522 2.8E-25 T 12-10-2018 Alide_3390 9dcd49d6091737484a20d3e7a7551d6f 633 SUPERFAMILY SSF142984 438 520 2.62E-21 T 12-10-2018 Alide_0494 9e2950ecbb6f85ed37e5387ac5859e62 240 Pfam PF01168 Alanine racemase, N-terminal domain 7 234 5.8E-30 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0494 9e2950ecbb6f85ed37e5387ac5859e62 240 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 233 29.717 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Alide_0494 9e2950ecbb6f85ed37e5387ac5859e62 240 Gene3D G3DSA:3.20.20.10 1 239 1.0E-79 T 12-10-2018 IPR029066 PLP-binding barrel Alide_0494 9e2950ecbb6f85ed37e5387ac5859e62 240 PIRSF PIRSF004848 1 239 2.7E-63 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Alide_0494 9e2950ecbb6f85ed37e5387ac5859e62 240 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 234 4.8E-67 T 12-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Alide_0494 9e2950ecbb6f85ed37e5387ac5859e62 240 SUPERFAMILY SSF51419 1 232 8.24E-71 T 12-10-2018 IPR029066 PLP-binding barrel Alide_4325 3f393d27df549a101bbae7121fa47e51 457 Gene3D G3DSA:1.10.287.130 195 302 7.7E-5 T 12-10-2018 Alide_4325 3f393d27df549a101bbae7121fa47e51 457 Gene3D G3DSA:3.30.565.10 314 457 1.8E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_4325 3f393d27df549a101bbae7121fa47e51 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 2.0E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4325 3f393d27df549a101bbae7121fa47e51 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 2.0E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4325 3f393d27df549a101bbae7121fa47e51 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 454 2.0E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4325 3f393d27df549a101bbae7121fa47e51 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 455 9.9E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_4325 3f393d27df549a101bbae7121fa47e51 457 SMART SM00387 351 457 3.4E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_4325 3f393d27df549a101bbae7121fa47e51 457 SUPERFAMILY SSF55874 316 454 2.75E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 Gene3D G3DSA:2.70.150.20 144 255 1.1E-34 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 461 472 4.5E-30 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 483 493 4.5E-30 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 536 555 4.5E-30 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 559 571 4.5E-30 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 343 357 4.5E-30 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 201 215 4.5E-30 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 123 615 1.8E-72 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 Gene3D G3DSA:3.40.50.1000 324 588 3.7E-84 T 12-10-2018 IPR023214 HAD superfamily Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 Pfam PF00122 E1-E2 ATPase 153 322 5.9E-43 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 SUPERFAMILY SSF81653 154 251 2.35E-26 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 SUPERFAMILY SSF81665 103 337 9.81E-10 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 83 638 3.7E-126 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 345 351 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00941 Cadmium-transporting ATPase signature 156 172 1.2E-10 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00941 Cadmium-transporting ATPase signature 136 156 1.2E-10 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00941 Cadmium-transporting ATPase signature 217 233 1.2E-10 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00941 Cadmium-transporting ATPase signature 65 82 1.2E-10 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 PRINTS PR00941 Cadmium-transporting ATPase signature 82 94 1.2E-10 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 Gene3D G3DSA:3.40.1110.10 354 468 3.7E-84 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 SUPERFAMILY SSF56784 341 635 1.8E-52 T 12-10-2018 IPR036412 HAD-like superfamily Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 101 638 1.1E-167 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 Pfam PF00702 haloacid dehalogenase-like hydrolase 339 549 1.6E-41 T 12-10-2018 Alide_2750 e14e987b4a221fe60d57c3d9f046db46 667 ProSitePatterns PS01229 Hypothetical cof family signature 2. 536 558 - T 12-10-2018 Alide_1053 f88b8cd6646ccc0870cc2508e7e715fa 358 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 70 85 - T 12-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1053 f88b8cd6646ccc0870cc2508e7e715fa 358 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 236 249 - T 12-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1053 f88b8cd6646ccc0870cc2508e7e715fa 358 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 24 353 24.636 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1053 f88b8cd6646ccc0870cc2508e7e715fa 358 Pfam PF00146 NADH dehydrogenase 30 346 2.4E-123 T 12-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 Gene3D G3DSA:3.30.70.1320 136 327 7.3E-269 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 SUPERFAMILY SSF82866 801 1023 3.92E-53 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 SUPERFAMILY SSF82693 42 126 2.88E-16 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 SUPERFAMILY SSF82714 186 266 3.27E-11 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 Gene3D G3DSA:1.20.1640.10 15 505 7.3E-269 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 SUPERFAMILY SSF82866 293 498 2.22E-41 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 Gene3D G3DSA:3.30.2090.10 180 273 7.3E-269 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1021 3.4E-290 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 SUPERFAMILY SSF82693 139 327 2.88E-19 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 SUPERFAMILY SSF82693 557 653 2.41E-5 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 Gene3D G3DSA:3.30.2090.10 714 805 7.3E-269 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 5.0E-40 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 5.0E-40 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 5.0E-40 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 5.0E-40 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 5.0E-40 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 PRINTS PR00702 Acriflavin resistance protein family signature 360 381 5.0E-40 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 5.0E-40 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 Gene3D G3DSA:3.30.70.1430 42 813 7.3E-269 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 Pfam PF00873 AcrB/AcrD/AcrF family 6 1020 9.6E-281 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 Gene3D G3DSA:1.20.1640.10 506 1018 7.3E-269 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 Gene3D G3DSA:3.30.70.1440 663 863 7.3E-269 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 Gene3D G3DSA:3.30.70.1430 560 662 7.3E-269 T 12-10-2018 Alide_3471 daf704a38e25834f60731fb626b5a0e5 1030 SUPERFAMILY SSF82714 715 801 1.83E-8 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2639 523ca8ffaf3d1226b3216c5981283776 257 Pfam PF00005 ABC transporter 41 177 6.4E-22 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2639 523ca8ffaf3d1226b3216c5981283776 257 SMART SM00382 39 221 5.6E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2639 523ca8ffaf3d1226b3216c5981283776 257 Gene3D G3DSA:3.40.50.300 12 253 1.4E-50 T 12-10-2018 Alide_2639 523ca8ffaf3d1226b3216c5981283776 257 SUPERFAMILY SSF52540 20 227 2.13E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0079 eeac169cd2e5ac65822f787c7500b467 488 Gene3D G3DSA:3.40.1080.10 1 166 3.3E-8 T 12-10-2018 Alide_0079 eeac169cd2e5ac65822f787c7500b467 488 Gene3D G3DSA:3.30.750.70 215 306 3.5E-5 T 12-10-2018 Alide_0079 eeac169cd2e5ac65822f787c7500b467 488 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 310 454 2.1E-41 T 12-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Alide_0079 eeac169cd2e5ac65822f787c7500b467 488 SUPERFAMILY SSF100950 1 213 1.75E-62 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_0079 eeac169cd2e5ac65822f787c7500b467 488 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 2 207 8.4E-23 T 12-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 Alide_0079 eeac169cd2e5ac65822f787c7500b467 488 SUPERFAMILY SSF100950 217 486 1.35E-81 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_0079 eeac169cd2e5ac65822f787c7500b467 488 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 1 486 3.7E-235 T 12-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 Alide_0079 eeac169cd2e5ac65822f787c7500b467 488 Gene3D G3DSA:3.40.1080.20 327 468 7.6E-38 T 12-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily Alide_0461 bbb39ddfb208220a0993b7b950f2ec6d 126 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 60 126 1.6E-28 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0461 bbb39ddfb208220a0993b7b950f2ec6d 126 Gene3D G3DSA:1.20.5.710 4 55 5.3E-20 T 12-10-2018 Alide_0461 bbb39ddfb208220a0993b7b950f2ec6d 126 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 126 1.1E-46 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0461 bbb39ddfb208220a0993b7b950f2ec6d 126 SUPERFAMILY SSF48300 4 62 9.68E-16 T 12-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0461 bbb39ddfb208220a0993b7b950f2ec6d 126 SUPERFAMILY SSF54736 55 126 5.23E-23 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Alide_0461 bbb39ddfb208220a0993b7b950f2ec6d 126 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 51 5.8E-17 T 12-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0461 bbb39ddfb208220a0993b7b950f2ec6d 126 Gene3D G3DSA:3.30.1390.10 56 126 1.2E-28 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Alide_0461 bbb39ddfb208220a0993b7b950f2ec6d 126 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 62 126 5.0E-23 T 12-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0461 bbb39ddfb208220a0993b7b950f2ec6d 126 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 126 24.327 T 12-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2867 71e37f5a62b594ab500ff65f98dd3ffb 158 Pfam PF10029 Predicted periplasmic protein (DUF2271) 24 151 2.4E-34 T 12-10-2018 IPR014469 Protein of unknown function DUF2271 Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 Hamap MF_01974 Methionine aminopeptidase [map]. 4 257 39.34 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 Pfam PF00557 Metallopeptidase family M24 14 248 3.8E-54 T 12-10-2018 IPR000994 Peptidase M24 Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 SUPERFAMILY SSF55920 4 255 4.45E-85 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 PRINTS PR00599 Methionine aminopeptidase-1 signature 96 112 1.3E-14 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 PRINTS PR00599 Methionine aminopeptidase-1 signature 198 210 1.3E-14 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 PRINTS PR00599 Methionine aminopeptidase-1 signature 167 179 1.3E-14 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 PRINTS PR00599 Methionine aminopeptidase-1 signature 74 87 1.3E-14 T 12-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 Gene3D G3DSA:3.90.230.10 1 262 1.1E-102 T 12-10-2018 Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 256 1.3E-87 T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Alide_2612 ad9274f36deb2f1007c26b8e82c658fa 272 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 173 191 - T 12-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 SUPERFAMILY SSF75620 13 352 1.57E-132 T 12-10-2018 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 2 357 7.0E-155 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 Pfam PF00472 RF-1 domain 215 321 4.5E-39 T 12-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 39.911 T 12-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 Gene3D G3DSA:1.20.58.410 6 102 3.2E-5 T 12-10-2018 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 Gene3D G3DSA:3.30.70.1660 112 342 2.0E-93 T 12-10-2018 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 Pfam PF03462 PCRF domain 14 203 4.9E-73 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 SMART SM00937 63 178 3.9E-67 T 12-10-2018 IPR005139 Peptide chain release factor GO:0006415 Alide_0937 ec974b481787c40ec77d2da33c68618e 360 Gene3D G3DSA:3.30.160.20 210 297 2.0E-93 T 12-10-2018 Alide_3504 0ba31e5235492e5b47de067522d83eaa 319 Gene3D G3DSA:3.40.190.150 26 308 1.1E-96 T 12-10-2018 Alide_3504 0ba31e5235492e5b47de067522d83eaa 319 PIRSF PIRSF017082 1 318 1.4E-68 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3504 0ba31e5235492e5b47de067522d83eaa 319 SUPERFAMILY SSF53850 104 278 4.56E-13 T 12-10-2018 Alide_3504 0ba31e5235492e5b47de067522d83eaa 319 Gene3D G3DSA:3.40.190.10 123 243 1.1E-96 T 12-10-2018 Alide_3504 0ba31e5235492e5b47de067522d83eaa 319 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 314 7.0E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3933 15cab58c663ba9232ddaa7ca2cbc36ff 232 Pfam PF07729 FCD domain 88 219 8.8E-23 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3933 15cab58c663ba9232ddaa7ca2cbc36ff 232 SMART SM00895 88 220 1.4E-15 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3933 15cab58c663ba9232ddaa7ca2cbc36ff 232 Gene3D G3DSA:1.10.10.10 14 79 9.8E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3933 15cab58c663ba9232ddaa7ca2cbc36ff 232 SMART SM00345 20 78 1.0E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3933 15cab58c663ba9232ddaa7ca2cbc36ff 232 SUPERFAMILY SSF48008 85 226 1.83E-20 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_3933 15cab58c663ba9232ddaa7ca2cbc36ff 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 78 4.0E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3933 15cab58c663ba9232ddaa7ca2cbc36ff 232 Gene3D G3DSA:1.20.120.530 81 229 1.1E-27 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_3933 15cab58c663ba9232ddaa7ca2cbc36ff 232 SUPERFAMILY SSF46785 9 105 3.14E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0965 089ff636e1f4a5e6d6c6a4991ee46046 140 SUPERFAMILY SSF54975 1 133 5.89E-40 T 12-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Alide_0965 089ff636e1f4a5e6d6c6a4991ee46046 140 SMART SM01034 2 93 5.1E-47 T 12-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 Alide_0965 089ff636e1f4a5e6d6c6a4991ee46046 140 Gene3D G3DSA:3.30.70.100 1 138 4.6E-36 T 12-10-2018 Alide_0965 089ff636e1f4a5e6d6c6a4991ee46046 140 Pfam PF04940 Sensors of blue-light using FAD 2 92 6.4E-29 T 12-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 257 311 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 30 533 8.6E-211 T 12-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 SUPERFAMILY SSF81442 26 534 2.22E-192 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 38 479 6.3E-149 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 255 276 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 388 407 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 438 459 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 103 127 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 175 193 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 325 346 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 301 316 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 360 378 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 146 158 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 204 223 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 29 54 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 PRINTS PR01165 Cytochrome c oxidase subunit I signature 76 99 3.5E-119 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3487 86ebac0ff8533812f44833cfa7bd5eac 543 Gene3D G3DSA:1.20.210.10 17 541 3.4E-215 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1372 b3279bdf2c9303328d529843a585318d 117 SUPERFAMILY SSF51182 15 116 6.48E-14 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_1372 b3279bdf2c9303328d529843a585318d 117 Pfam PF05899 Protein of unknown function (DUF861) 46 114 1.1E-19 T 12-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 Alide_1372 b3279bdf2c9303328d529843a585318d 117 Gene3D G3DSA:2.60.120.10 5 117 1.8E-22 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_0823 c58895bdde6ada481c5b85f7baedd9c3 293 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 9 284 2.5E-56 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Alide_0823 c58895bdde6ada481c5b85f7baedd9c3 293 PIRSF PIRSF026649 1 293 5.5E-72 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Alide_2781 c6653c7395c254d0a3898231a70538b4 260 Pfam PF00005 ABC transporter 27 164 5.1E-31 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2781 c6653c7395c254d0a3898231a70538b4 260 SMART SM00382 34 213 9.6E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2781 c6653c7395c254d0a3898231a70538b4 260 Gene3D G3DSA:3.40.50.300 2 258 7.7E-61 T 12-10-2018 Alide_2781 c6653c7395c254d0a3898231a70538b4 260 SUPERFAMILY SSF52540 7 237 9.42E-70 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3725 83747067466f5ce03af1d4b5204f6dc4 222 Pfam PF12728 Helix-turn-helix domain 14 60 3.8E-10 T 12-10-2018 Alide_3725 83747067466f5ce03af1d4b5204f6dc4 222 SUPERFAMILY SSF52172 97 217 2.13E-17 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3725 83747067466f5ce03af1d4b5204f6dc4 222 SMART SM00448 97 212 1.6E-7 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3725 83747067466f5ce03af1d4b5204f6dc4 222 Gene3D G3DSA:3.40.50.2300 90 219 2.2E-15 T 12-10-2018 Alide_3725 83747067466f5ce03af1d4b5204f6dc4 222 Pfam PF00072 Response regulator receiver domain 99 207 9.0E-11 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3725 83747067466f5ce03af1d4b5204f6dc4 222 SUPERFAMILY SSF46955 14 68 1.25E-5 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_3725 83747067466f5ce03af1d4b5204f6dc4 222 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 14 60 1.4E-11 T 12-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 Alide_3725 83747067466f5ce03af1d4b5204f6dc4 222 Gene3D G3DSA:1.10.1660.10 7 61 3.2E-6 T 12-10-2018 Alide_4146 6ada4b2e28fb58d4aac4ae0ff1a18729 490 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 46 486 1.0E-72 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_4146 6ada4b2e28fb58d4aac4ae0ff1a18729 490 SUPERFAMILY SSF56601 41 486 4.64E-91 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Alide_4146 6ada4b2e28fb58d4aac4ae0ff1a18729 490 Gene3D G3DSA:3.50.80.20 108 195 2.1E-16 T 12-10-2018 Alide_4146 6ada4b2e28fb58d4aac4ae0ff1a18729 490 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 84 103 2.0E-15 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_4146 6ada4b2e28fb58d4aac4ae0ff1a18729 490 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 384 398 2.0E-15 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_4146 6ada4b2e28fb58d4aac4ae0ff1a18729 490 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 312 334 2.0E-15 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_4146 6ada4b2e28fb58d4aac4ae0ff1a18729 490 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 444 457 2.0E-15 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_4146 6ada4b2e28fb58d4aac4ae0ff1a18729 490 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 77 466 2.3E-50 T 12-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_4146 6ada4b2e28fb58d4aac4ae0ff1a18729 490 Gene3D G3DSA:3.40.710.10 294 482 5.3E-54 T 12-10-2018 Alide_2145 42958a75c614e85d29eb0fc30d61a650 133 Pfam PF03788 LrgA family 31 121 1.2E-22 T 12-10-2018 IPR005538 LrgA/CidA family GO:0016021 Alide_1742 f2ff797af5a2db06e8fb64fc6a51a9c5 210 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 7 201 2.7E-64 T 12-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 Alide_1742 f2ff797af5a2db06e8fb64fc6a51a9c5 210 Pfam PF12804 MobA-like NTP transferase domain 9 170 3.7E-34 T 12-10-2018 IPR025877 MobA-like NTP transferase Alide_1742 f2ff797af5a2db06e8fb64fc6a51a9c5 210 SUPERFAMILY SSF53448 6 201 2.1E-29 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_1742 f2ff797af5a2db06e8fb64fc6a51a9c5 210 Gene3D G3DSA:3.90.550.10 3 207 4.6E-49 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_1742 f2ff797af5a2db06e8fb64fc6a51a9c5 210 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 5 204 26.757 T 12-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 Alide_0867 72c58c456d8255b8575802ed54e958f2 90 SUPERFAMILY SSF52091 2 87 1.28E-10 T 12-10-2018 IPR036513 STAS domain superfamily Alide_0867 72c58c456d8255b8575802ed54e958f2 90 Pfam PF13466 STAS domain 2 83 3.9E-20 T 12-10-2018 IPR002645 STAS domain Alide_0867 72c58c456d8255b8575802ed54e958f2 90 Gene3D G3DSA:3.30.750.24 1 90 1.0E-11 T 12-10-2018 IPR036513 STAS domain superfamily Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 Gene3D G3DSA:3.30.499.10 364 562 2.4E-72 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 SUPERFAMILY SSF53732 9 588 2.09E-179 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 Gene3D G3DSA:1.10.1440.20 563 620 7.4E-8 T 12-10-2018 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 Gene3D G3DSA:3.20.19.10 626 860 5.0E-82 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 Pfam PF00330 Aconitase family (aconitate hydratase) 72 535 5.8E-144 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 Gene3D G3DSA:3.30.499.20 11 362 1.7E-127 T 12-10-2018 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 SUPERFAMILY SSF52016 601 859 1.49E-67 T 12-10-2018 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 PRINTS PR00415 Aconitase family signature 466 479 1.0E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 PRINTS PR00415 Aconitase family signature 193 206 1.0E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 PRINTS PR00415 Aconitase family signature 207 222 1.0E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 PRINTS PR00415 Aconitase family signature 164 172 1.0E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 PRINTS PR00415 Aconitase family signature 404 415 1.0E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 PRINTS PR00415 Aconitase family signature 283 296 1.0E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 PRINTS PR00415 Aconitase family signature 362 376 1.0E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 PRINTS PR00415 Aconitase family signature 269 282 1.0E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 PRINTS PR00415 Aconitase family signature 140 153 1.0E-27 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 4 861 0.0 T 12-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 Alide_1903 d6a492fcead7f14c1162d08e1fc5a737 875 Pfam PF00694 Aconitase C-terminal domain 664 789 2.5E-31 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 ProSitePatterns PS00622 LuxR-type HTH domain signature. 138 165 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 SUPERFAMILY SSF46894 111 178 1.33E-17 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 SMART SM00421 121 178 7.4E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 SMART SM00091 4 70 2.7E-5 T 12-10-2018 IPR000014 PAS domain Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 Pfam PF00196 Bacterial regulatory proteins, luxR family 123 176 8.9E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 Gene3D G3DSA:3.30.450.20 3 115 1.0E-25 T 12-10-2018 Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 SUPERFAMILY SSF55785 5 114 1.71E-14 T 12-10-2018 IPR035965 PAS domain superfamily Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 Pfam PF13426 PAS domain 14 115 9.1E-11 T 12-10-2018 IPR000014 PAS domain Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 115 1.2E-13 T 12-10-2018 IPR000014 PAS domain Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 Gene3D G3DSA:1.10.10.10 116 180 3.4E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 166 5.4E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 124 138 5.4E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2429 083c8ae999896fbfa1d95f56ff34a5ac 181 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 154 5.4E-10 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2383 e8d89f02a50d6d1fb0ad53d18fbe90b1 449 Gene3D G3DSA:2.40.50.100 88 254 2.6E-67 T 12-10-2018 Alide_2383 e8d89f02a50d6d1fb0ad53d18fbe90b1 449 Gene3D G3DSA:1.10.287.470 122 216 2.6E-67 T 12-10-2018 Alide_2383 e8d89f02a50d6d1fb0ad53d18fbe90b1 449 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 68 347 2.9E-42 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_2383 e8d89f02a50d6d1fb0ad53d18fbe90b1 449 SUPERFAMILY SSF111369 77 330 5.36E-18 T 12-10-2018 Alide_2383 e8d89f02a50d6d1fb0ad53d18fbe90b1 449 Gene3D G3DSA:2.40.30.170 77 333 2.6E-67 T 12-10-2018 Alide_2383 e8d89f02a50d6d1fb0ad53d18fbe90b1 449 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 83 326 4.3E-18 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_2383 e8d89f02a50d6d1fb0ad53d18fbe90b1 449 Gene3D G3DSA:2.40.420.20 72 347 2.6E-67 T 12-10-2018 Alide_1581 5e632839b3bb899ad334acdbc4d3e324 448 Pfam PF02321 Outer membrane efflux protein 243 432 2.0E-27 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_1581 5e632839b3bb899ad334acdbc4d3e324 448 Pfam PF02321 Outer membrane efflux protein 45 219 1.1E-24 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_1581 5e632839b3bb899ad334acdbc4d3e324 448 Gene3D G3DSA:1.20.1600.10 28 448 2.3E-105 T 12-10-2018 Alide_1581 5e632839b3bb899ad334acdbc4d3e324 448 SUPERFAMILY SSF56954 5 435 7.85E-89 T 12-10-2018 Alide_1581 5e632839b3bb899ad334acdbc4d3e324 448 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 26 444 5.1E-87 T 12-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 Alide_3891 7de065d26c616b47a784f4f5ffee8467 479 Gene3D G3DSA:3.90.1150.10 130 465 4.2E-71 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_3891 7de065d26c616b47a784f4f5ffee8467 479 Gene3D G3DSA:1.10.10.10 2 77 1.0E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3891 7de065d26c616b47a784f4f5ffee8467 479 Gene3D G3DSA:3.40.640.10 162 378 4.2E-71 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3891 7de065d26c616b47a784f4f5ffee8467 479 SMART SM00345 8 67 8.3E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3891 7de065d26c616b47a784f4f5ffee8467 479 SUPERFAMILY SSF53383 135 465 4.73E-70 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3891 7de065d26c616b47a784f4f5ffee8467 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 67 7.2E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3891 7de065d26c616b47a784f4f5ffee8467 479 SUPERFAMILY SSF46785 3 77 4.34E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3891 7de065d26c616b47a784f4f5ffee8467 479 Pfam PF00155 Aminotransferase class I and II 152 464 2.1E-30 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_0604 64e4dada35a891f5891b27031399a200 327 Pfam PF00158 Sigma-54 interaction domain 3 170 3.2E-63 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_0604 64e4dada35a891f5891b27031399a200 327 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 90 105 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Alide_0604 64e4dada35a891f5891b27031399a200 327 Gene3D G3DSA:1.10.8.60 176 256 4.6E-26 T 12-10-2018 Alide_0604 64e4dada35a891f5891b27031399a200 327 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 297 317 5.1E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0604 64e4dada35a891f5891b27031399a200 327 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 280 297 5.1E-6 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0604 64e4dada35a891f5891b27031399a200 327 SUPERFAMILY SSF52540 2 247 1.07E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0604 64e4dada35a891f5891b27031399a200 327 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 217 226 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Alide_0604 64e4dada35a891f5891b27031399a200 327 SMART SM00382 24 167 3.5E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0604 64e4dada35a891f5891b27031399a200 327 Pfam PF02954 Bacterial regulatory protein, Fis family 276 309 2.8E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0604 64e4dada35a891f5891b27031399a200 327 Gene3D G3DSA:3.40.50.300 1 175 1.3E-60 T 12-10-2018 Alide_0604 64e4dada35a891f5891b27031399a200 327 SUPERFAMILY SSF46689 217 316 2.24E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0604 64e4dada35a891f5891b27031399a200 327 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 28 41 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_0604 64e4dada35a891f5891b27031399a200 327 Gene3D G3DSA:1.10.10.60 269 318 7.2E-6 T 12-10-2018 Alide_4320 fc3d488f86a12e8d3a3585af547a4b0f 397 Gene3D G3DSA:3.40.50.10540 5 350 9.6E-127 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4320 fc3d488f86a12e8d3a3585af547a4b0f 397 Gene3D G3DSA:3.30.1540.10 227 318 9.6E-127 T 12-10-2018 Alide_4320 fc3d488f86a12e8d3a3585af547a4b0f 397 SUPERFAMILY SSF89796 4 390 2.09E-128 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4320 fc3d488f86a12e8d3a3585af547a4b0f 397 Pfam PF02515 CoA-transferase family III 5 367 3.3E-119 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 2.3E-45 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 121 4.0E-21 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 PIRSF PIRSF016578 3 385 2.7E-16 T 12-10-2018 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 Gene3D G3DSA:1.20.140.10 240 384 5.6E-50 T 12-10-2018 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 Gene3D G3DSA:2.40.110.10 125 239 1.7E-37 T 12-10-2018 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 Gene3D G3DSA:1.10.540.10 5 123 7.9E-25 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 SUPERFAMILY SSF56645 9 246 3.8E-67 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 SUPERFAMILY SSF47203 233 383 6.6E-53 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2784 df1156e226094eb79d0a78a8ad30cb60 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 222 4.7E-23 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3191 51b3a3a76ed0ec55f8a40592eb8529cb 261 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 71 233 2.9E-8 T 12-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Alide_3191 51b3a3a76ed0ec55f8a40592eb8529cb 261 Gene3D G3DSA:3.30.950.10 147 261 3.6E-36 T 12-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Alide_3191 51b3a3a76ed0ec55f8a40592eb8529cb 261 SUPERFAMILY SSF53790 8 245 9.95E-54 T 12-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Alide_3191 51b3a3a76ed0ec55f8a40592eb8529cb 261 Gene3D G3DSA:3.40.1010.10 7 146 4.3E-32 T 12-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Alide_2440 b17f53e64ddf40c8a691cbbc1e8b82b6 373 SUPERFAMILY SSF53822 32 367 8.9E-76 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2440 b17f53e64ddf40c8a691cbbc1e8b82b6 373 Gene3D G3DSA:3.40.50.2300 40 351 6.2E-72 T 12-10-2018 Alide_2440 b17f53e64ddf40c8a691cbbc1e8b82b6 373 Gene3D G3DSA:3.40.50.2300 151 278 6.2E-72 T 12-10-2018 Alide_2440 b17f53e64ddf40c8a691cbbc1e8b82b6 373 Pfam PF13458 Periplasmic binding protein 32 362 7.4E-58 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_3412 0254a39da1a30dd75a576b3e77a440bd 536 SUPERFAMILY SSF51905 2 534 1.91E-36 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3412 0254a39da1a30dd75a576b3e77a440bd 536 Pfam PF00890 FAD binding domain 7 517 9.4E-63 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_3412 0254a39da1a30dd75a576b3e77a440bd 536 Gene3D G3DSA:3.90.700.10 258 468 2.5E-56 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_3412 0254a39da1a30dd75a576b3e77a440bd 536 Gene3D G3DSA:3.50.50.60 7 530 2.5E-56 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2641 32f30138c3a461073a05e3a48e5f4225 144 Pfam PF13441 YMGG-like Gly-zipper 69 108 4.9E-7 T 12-10-2018 IPR027367 YMGG-like Gly-zipper Alide_3714 59a12b61c5745bd81402a4716e8b08f1 308 SUPERFAMILY SSF81799 112 212 6.8E-31 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Alide_3714 59a12b61c5745bd81402a4716e8b08f1 308 SUPERFAMILY SSF53335 7 304 1.71E-40 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_3714 59a12b61c5745bd81402a4716e8b08f1 308 Gene3D G3DSA:1.10.150.170 110 213 3.2E-94 T 12-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Alide_3714 59a12b61c5745bd81402a4716e8b08f1 308 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 304 35.326 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Alide_3714 59a12b61c5745bd81402a4716e8b08f1 308 Pfam PF01795 MraW methylase family 5 303 2.3E-89 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Alide_3714 59a12b61c5745bd81402a4716e8b08f1 308 PIRSF PIRSF004486 2 305 5.1E-90 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Alide_3714 59a12b61c5745bd81402a4716e8b08f1 308 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 6 303 1.6E-90 T 12-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Alide_3714 59a12b61c5745bd81402a4716e8b08f1 308 Gene3D G3DSA:3.40.50.150 10 303 3.2E-94 T 12-10-2018 Alide_2705 14add83e75d0e010ed8d66d0e0e83880 394 PIRSF PIRSF000429 1 394 6.3E-115 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2705 14add83e75d0e010ed8d66d0e0e83880 394 Pfam PF00108 Thiolase, N-terminal domain 6 263 1.4E-84 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_2705 14add83e75d0e010ed8d66d0e0e83880 394 Gene3D G3DSA:3.40.47.10 128 390 1.3E-140 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2705 14add83e75d0e010ed8d66d0e0e83880 394 SUPERFAMILY SSF53901 272 393 1.55E-38 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2705 14add83e75d0e010ed8d66d0e0e83880 394 Pfam PF02803 Thiolase, C-terminal domain 272 393 5.4E-38 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_2705 14add83e75d0e010ed8d66d0e0e83880 394 SUPERFAMILY SSF53901 5 271 1.43E-79 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2705 14add83e75d0e010ed8d66d0e0e83880 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 392 1.3E-129 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2705 14add83e75d0e010ed8d66d0e0e83880 394 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 Alide_2705 14add83e75d0e010ed8d66d0e0e83880 394 Gene3D G3DSA:3.40.47.10 7 277 1.3E-140 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1512 13fb6a49d26f7a955a2e30dec77a06f7 162 Pfam PF02674 Colicin V production protein 4 144 5.4E-36 T 12-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 Alide_2317 40d26f733153acbb1623fcf158461cb0 578 Gene3D G3DSA:3.40.720.10 248 573 4.0E-73 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Alide_2317 40d26f733153acbb1623fcf158461cb0 578 Pfam PF00884 Sulfatase 259 555 2.3E-36 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Alide_2317 40d26f733153acbb1623fcf158461cb0 578 Pfam PF08019 Domain of unknown function (DUF1705) 81 223 1.8E-39 T 12-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 Alide_2317 40d26f733153acbb1623fcf158461cb0 578 SUPERFAMILY SSF53649 259 566 2.4E-19 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Alide_1663 03d58bd630a56b05857b1d2c36c550eb 72 Gene3D G3DSA:1.10.260.40 4 60 3.3E-8 T 12-10-2018 Alide_1663 03d58bd630a56b05857b1d2c36c550eb 72 SUPERFAMILY SSF47413 4 49 2.2E-9 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_1663 03d58bd630a56b05857b1d2c36c550eb 72 SMART SM00530 7 59 8.0E-5 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_1663 03d58bd630a56b05857b1d2c36c550eb 72 Pfam PF01381 Helix-turn-helix 12 50 6.8E-9 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_4222 f0e0fd3496b1721d2184d79683a3741f 462 SUPERFAMILY SSF51905 26 404 1.42E-38 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4222 f0e0fd3496b1721d2184d79683a3741f 462 Gene3D G3DSA:3.50.50.60 27 392 1.9E-65 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4222 f0e0fd3496b1721d2184d79683a3741f 462 Pfam PF01266 FAD dependent oxidoreductase 27 390 5.6E-50 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_4222 f0e0fd3496b1721d2184d79683a3741f 462 Gene3D G3DSA:3.30.9.10 121 351 1.9E-65 T 12-10-2018 Alide_4222 f0e0fd3496b1721d2184d79683a3741f 462 TIGRFAM TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase 3 461 5.5E-247 T 12-10-2018 IPR017715 Putative aminophosphonate oxidoreductase Alide_3173 793e2d344c601cab0be854982bacf00b 228 Pfam PF14622 Ribonuclease-III-like 19 138 3.1E-36 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Alide_3173 793e2d344c601cab0be854982bacf00b 228 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 223 4.8E-69 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Alide_3173 793e2d344c601cab0be854982bacf00b 228 Gene3D G3DSA:1.10.1520.10 5 143 1.9E-44 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Alide_3173 793e2d344c601cab0be854982bacf00b 228 SMART SM00358 156 224 1.1E-17 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain Alide_3173 793e2d344c601cab0be854982bacf00b 228 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 28.82 T 12-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Alide_3173 793e2d344c601cab0be854982bacf00b 228 SUPERFAMILY SSF54768 109 223 5.03E-26 T 12-10-2018 Alide_3173 793e2d344c601cab0be854982bacf00b 228 Pfam PF00035 Double-stranded RNA binding motif 156 223 4.9E-12 T 12-10-2018 IPR014720 Double-stranded RNA-binding domain Alide_3173 793e2d344c601cab0be854982bacf00b 228 SUPERFAMILY SSF69065 5 156 5.06E-45 T 12-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Alide_3173 793e2d344c601cab0be854982bacf00b 228 Gene3D G3DSA:3.30.160.20 154 225 1.4E-18 T 12-10-2018 Alide_3173 793e2d344c601cab0be854982bacf00b 228 SMART SM00535 21 154 6.6E-43 T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Alide_3173 793e2d344c601cab0be854982bacf00b 228 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 12-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 Pfam PF01627 Hpt domain 20 111 1.6E-18 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 SMART SM00387 424 564 2.0E-23 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 Gene3D G3DSA:2.30.30.40 564 691 5.2E-39 T 12-10-2018 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 Gene3D G3DSA:2.40.50.180 587 651 5.2E-39 T 12-10-2018 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 SMART SM01231 316 379 9.6E-21 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 Gene3D G3DSA:1.20.120.160 13 149 2.0E-39 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 Gene3D G3DSA:1.10.287.560 316 379 2.3E-17 T 12-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 SMART SM00073 17 114 1.6E-27 T 12-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 Gene3D G3DSA:3.30.565.10 380 563 1.2E-52 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 316 379 1.4E-18 T 12-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 SUPERFAMILY SSF47226 17 139 1.31E-29 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 SUPERFAMILY SSF47384 317 380 2.82E-15 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 SUPERFAMILY SSF55874 382 562 4.32E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 Pfam PF01584 CheW-like domain 569 699 6.6E-26 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 427 563 2.8E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 SUPERFAMILY SSF50341 563 696 3.01E-30 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 SMART SM00260 556 696 4.2E-35 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 518 1.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 483 1.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 561 1.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3840 142a60224f470d0d598ae0a686e7ba60 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 542 1.8E-12 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 Pfam PF02978 Signal peptide binding domain 329 428 5.8E-30 T 12-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 SMART SM00963 1 86 1.4E-30 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 Gene3D G3DSA:1.10.260.30 328 452 7.8E-40 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 SMART SM00382 99 246 1.5E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 Gene3D G3DSA:3.40.50.300 91 285 9.8E-115 T 12-10-2018 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 SUPERFAMILY SSF47364 2 93 3.93E-25 T 12-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 SMART SM00962 100 296 1.1E-107 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 Pfam PF00448 SRP54-type protein, GTPase domain 100 295 6.9E-69 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 Gene3D G3DSA:1.20.120.140 5 306 9.8E-115 T 12-10-2018 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.2E-20 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 TIGRFAM TIGR00959 ffh: signal recognition particle protein 4 430 4.9E-167 T 12-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 SUPERFAMILY SSF52540 92 298 1.29E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 SUPERFAMILY SSF47446 298 431 3.66E-41 T 12-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Alide_3655 dd6ba4221d24d57c5f26272304e98f12 459 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 454 32.186 T 12-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 Alide_4593 b283aa81f412c3acad0db13d83442ac0 110 Pfam PF05717 IS66 Orf2 like protein 6 101 1.1E-26 T 12-10-2018 IPR008878 Transposase IS66, Orf2 Alide_1872 b283aa81f412c3acad0db13d83442ac0 110 Pfam PF05717 IS66 Orf2 like protein 6 101 1.1E-26 T 12-10-2018 IPR008878 Transposase IS66, Orf2 Alide_1521 b283aa81f412c3acad0db13d83442ac0 110 Pfam PF05717 IS66 Orf2 like protein 6 101 1.1E-26 T 12-10-2018 IPR008878 Transposase IS66, Orf2 Alide_3775 b283aa81f412c3acad0db13d83442ac0 110 Pfam PF05717 IS66 Orf2 like protein 6 101 1.1E-26 T 12-10-2018 IPR008878 Transposase IS66, Orf2 Alide_3202 4b3e449998489ad74e027768395c4270 297 Gene3D G3DSA:3.40.190.10 162 267 3.0E-62 T 12-10-2018 Alide_3202 4b3e449998489ad74e027768395c4270 297 Gene3D G3DSA:3.40.190.10 91 282 3.0E-62 T 12-10-2018 Alide_3202 4b3e449998489ad74e027768395c4270 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3202 4b3e449998489ad74e027768395c4270 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3202 4b3e449998489ad74e027768395c4270 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3202 4b3e449998489ad74e027768395c4270 297 SUPERFAMILY SSF53850 88 291 2.17E-37 T 12-10-2018 Alide_3202 4b3e449998489ad74e027768395c4270 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.6E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3202 4b3e449998489ad74e027768395c4270 297 SUPERFAMILY SSF46785 1 81 1.49E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3202 4b3e449998489ad74e027768395c4270 297 Gene3D G3DSA:1.10.10.10 1 90 3.5E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3202 4b3e449998489ad74e027768395c4270 297 Pfam PF03466 LysR substrate binding domain 87 280 1.0E-41 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 SUPERFAMILY SSF55973 4 110 2.67E-45 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 PIRSF PIRSF000497 1 392 3.3E-168 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 Gene3D G3DSA:3.30.300.10 6 241 1.9E-174 T 12-10-2018 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 SUPERFAMILY SSF55973 241 391 3.18E-68 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 390 9.1E-179 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 101 1.7E-40 T 12-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 Gene3D G3DSA:3.30.300.10 103 383 1.9E-174 T 12-10-2018 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 SUPERFAMILY SSF55973 113 240 2.04E-47 T 12-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 267 275 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 Pfam PF02772 S-adenosylmethionine synthetase, central domain 118 239 7.1E-45 T 12-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 241 380 5.0E-68 T 12-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 119 129 - T 12-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 Gene3D G3DSA:3.30.300.10 12 278 1.9E-174 T 12-10-2018 Alide_0821 d911aa88421ff9f6fa39f8043609976f 393 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 391 56.037 T 12-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Alide_0963 778c03ca2a4ddb8b33840d890f0d743c 409 SUPERFAMILY SSF56024 213 386 1.03E-36 T 12-10-2018 Alide_0963 778c03ca2a4ddb8b33840d890f0d743c 409 Gene3D G3DSA:3.30.870.10 1 201 4.5E-30 T 12-10-2018 Alide_0963 778c03ca2a4ddb8b33840d890f0d743c 409 Pfam PF13091 PLD-like domain 237 363 7.8E-25 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_0963 778c03ca2a4ddb8b33840d890f0d743c 409 Pfam PF13091 PLD-like domain 29 139 2.3E-11 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_0963 778c03ca2a4ddb8b33840d890f0d743c 409 SUPERFAMILY SSF56024 11 179 5.23E-35 T 12-10-2018 Alide_0963 778c03ca2a4ddb8b33840d890f0d743c 409 Gene3D G3DSA:3.30.870.10 221 370 2.6E-27 T 12-10-2018 Alide_0963 778c03ca2a4ddb8b33840d890f0d743c 409 Hamap MF_01917 Cardiolipin synthase B [clsB]. 7 409 42.448 T 12-10-2018 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 Alide_3144 ab1ac94271e51f6bd31bf5d448724e6c 890 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 846 889 4.3E-13 T 12-10-2018 IPR020011 Motility protein FimV, C-terminal Alide_3144 ab1ac94271e51f6bd31bf5d448724e6c 890 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 232 303 2.5E-22 T 12-10-2018 IPR020012 Motility protein FimV, N-terminal Alide_3144 ab1ac94271e51f6bd31bf5d448724e6c 890 Gene3D G3DSA:1.20.58.2200 832 890 4.5E-11 T 12-10-2018 IPR038440 FimV, C-terminal domain superfamily Alide_1362 bc08dbc42f0e8d1e75cb518c761d63a6 529 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1362 bc08dbc42f0e8d1e75cb518c761d63a6 529 SUPERFAMILY SSF52540 18 237 1.08E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1362 bc08dbc42f0e8d1e75cb518c761d63a6 529 Gene3D G3DSA:3.40.50.300 267 502 5.2E-27 T 12-10-2018 Alide_1362 bc08dbc42f0e8d1e75cb518c761d63a6 529 Pfam PF00005 ABC transporter 36 180 1.8E-35 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1362 bc08dbc42f0e8d1e75cb518c761d63a6 529 Pfam PF00005 ABC transporter 286 439 7.8E-6 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1362 bc08dbc42f0e8d1e75cb518c761d63a6 529 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1362 bc08dbc42f0e8d1e75cb518c761d63a6 529 Gene3D G3DSA:3.40.50.300 13 247 9.6E-63 T 12-10-2018 Alide_1362 bc08dbc42f0e8d1e75cb518c761d63a6 529 SUPERFAMILY SSF52540 282 495 6.62E-29 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1362 bc08dbc42f0e8d1e75cb518c761d63a6 529 SMART SM00382 44 230 1.9E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1280 b64c59e0939c7ae0507882762468746a 160 Pfam PF05926 Phage head completion protein (GPL) 18 159 4.3E-40 T 12-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 Gene3D G3DSA:3.40.50.150 111 304 4.6E-64 T 12-10-2018 Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 Pfam PF03705 CheR methyltransferase, all-alpha domain 46 96 3.4E-17 T 12-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 PIRSF PIRSF000410 28 304 3.1E-91 T 12-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 Gene3D G3DSA:1.10.155.10 34 110 2.9E-25 T 12-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 SUPERFAMILY SSF47757 39 111 3.66E-21 T 12-10-2018 Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 SMART SM00138 45 304 1.7E-88 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 Pfam PF01739 CheR methyltransferase, SAM binding domain 112 298 5.5E-54 T 12-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 SUPERFAMILY SSF53335 112 301 2.43E-55 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 PRINTS PR00996 Glutamate methyltransferase family signature 263 286 3.1E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 PRINTS PR00996 Glutamate methyltransferase family signature 139 159 3.1E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 PRINTS PR00996 Glutamate methyltransferase family signature 67 80 3.1E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 PRINTS PR00996 Glutamate methyltransferase family signature 105 117 3.1E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 PRINTS PR00996 Glutamate methyltransferase family signature 172 188 3.1E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Alide_3838 71fb63d6b0a2fadebbc23d72996d3fe5 304 PRINTS PR00996 Glutamate methyltransferase family signature 244 258 3.1E-42 T 12-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 309 5.2E-22 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 Gene3D G3DSA:3.50.50.60 8 312 3.0E-38 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2012 c236524619daa55c1e13b086002c1ef8 462 Pfam PF04324 BFD-like [2Fe-2S] binding domain 380 431 1.4E-6 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PIRSF PIRSF037495 1 462 4.3E-156 T 12-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 SUPERFAMILY SSF51905 5 333 7.48E-34 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2012 c236524619daa55c1e13b086002c1ef8 462 Gene3D G3DSA:1.10.10.1100 368 441 2.3E-16 T 12-10-2018 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 Gene3D G3DSA:3.50.50.60 122 263 3.0E-38 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 110 128 2.3E-15 T 12-10-2018 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 271 2.3E-15 T 12-10-2018 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 287 309 2.3E-15 T 12-10-2018 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 2.3E-15 T 12-10-2018 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 2.3E-15 T 12-10-2018 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.4E-12 T 12-10-2018 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 256 270 1.4E-12 T 12-10-2018 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 302 309 1.4E-12 T 12-10-2018 Alide_2012 c236524619daa55c1e13b086002c1ef8 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 179 1.4E-12 T 12-10-2018 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 PIRSF PIRSF000099 5 438 6.4E-155 T 12-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 11 437 40.863 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 239 271 - T 12-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 Gene3D G3DSA:3.40.50.1980 36 241 8.6E-126 T 12-10-2018 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 39 436 2.2E-157 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 Pfam PF00815 Histidinol dehydrogenase 29 437 2.0E-166 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 SUPERFAMILY SSF53720 33 437 2.16E-85 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 PRINTS PR00083 Histidinol dehydrogenase signature 210 235 5.4E-83 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 PRINTS PR00083 Histidinol dehydrogenase signature 261 280 5.4E-83 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 PRINTS PR00083 Histidinol dehydrogenase signature 371 389 5.4E-83 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 PRINTS PR00083 Histidinol dehydrogenase signature 239 260 5.4E-83 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 PRINTS PR00083 Histidinol dehydrogenase signature 39 63 5.4E-83 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 PRINTS PR00083 Histidinol dehydrogenase signature 330 355 5.4E-83 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 PRINTS PR00083 Histidinol dehydrogenase signature 146 172 5.4E-83 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 PRINTS PR00083 Histidinol dehydrogenase signature 180 206 5.4E-83 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_0874 197a7a000fa406e84f92f677266e16fd 438 Gene3D G3DSA:3.40.50.1980 243 359 8.6E-126 T 12-10-2018 Alide_0189 648cebdfda3ff39d39a82ec3f3135228 539 Gene3D G3DSA:3.90.226.10 275 539 1.2E-87 T 12-10-2018 Alide_0189 648cebdfda3ff39d39a82ec3f3135228 539 Gene3D G3DSA:3.90.226.10 3 272 4.5E-65 T 12-10-2018 Alide_0189 648cebdfda3ff39d39a82ec3f3135228 539 SUPERFAMILY SSF52096 238 518 6.84E-77 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0189 648cebdfda3ff39d39a82ec3f3135228 539 Pfam PF01039 Carboxyl transferase domain 49 526 2.8E-113 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Alide_0189 648cebdfda3ff39d39a82ec3f3135228 539 SUPERFAMILY SSF52096 38 270 7.12E-49 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3218 d8bcb173494aa9adc1d486d564eb1bbb 330 PIRSF PIRSF017082 1 330 7.5E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3218 d8bcb173494aa9adc1d486d564eb1bbb 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 326 5.4E-93 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3218 d8bcb173494aa9adc1d486d564eb1bbb 330 SUPERFAMILY SSF53850 118 293 3.26E-11 T 12-10-2018 Alide_3218 d8bcb173494aa9adc1d486d564eb1bbb 330 Gene3D G3DSA:3.40.190.150 35 320 2.5E-118 T 12-10-2018 Alide_3218 d8bcb173494aa9adc1d486d564eb1bbb 330 Gene3D G3DSA:3.40.190.10 132 255 2.5E-118 T 12-10-2018 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Gene3D G3DSA:3.90.199.10 50 543 7.2E-223 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 827 871 8.8E-12 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 726 771 3.8E-15 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 567 612 1.5E-9 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 617 660 7.8E-9 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 678 721 4.2E-7 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 777 823 1.3E-11 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 27 874 0.0 T 12-10-2018 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 24 875 24.035 T 12-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 49 529 2.3E-155 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 SUPERFAMILY SSF56719 47 542 6.67E-178 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Gene3D G3DSA:2.120.10.90 560 874 2.8E-122 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 SUPERFAMILY SSF101904 562 880 1.83E-109 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Gene3D G3DSA:3.30.1360.40 253 350 7.2E-223 T 12-10-2018 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 SMART SM00434 28 524 4.3E-287 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_1855 4ee9801b42e2d0de3b8d96d6eece5ac1 896 Gene3D G3DSA:1.10.268.10 387 518 7.2E-223 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Alide_3947 abdffe661bbe0a3ad54a75d1fe40a20b 214 Gene3D G3DSA:3.30.1310.20 63 121 3.6E-21 T 12-10-2018 Alide_3947 abdffe661bbe0a3ad54a75d1fe40a20b 214 Pfam PF00156 Phosphoribosyl transferase domain 15 200 4.3E-34 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Alide_3947 abdffe661bbe0a3ad54a75d1fe40a20b 214 SUPERFAMILY SSF53271 9 213 1.09E-47 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_2845 4891e83a9938f662a028bcd8f354c1d5 585 Gene3D G3DSA:3.40.50.1820 228 512 2.6E-12 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2845 4891e83a9938f662a028bcd8f354c1d5 585 SUPERFAMILY SSF53474 212 509 2.22E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2845 4891e83a9938f662a028bcd8f354c1d5 585 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 97 266 4.6E-58 T 12-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 Alide_2845 4891e83a9938f662a028bcd8f354c1d5 585 Pfam PF12551 Poly-beta-hydroxybutyrate polymerase N terminal 21 60 2.7E-16 T 12-10-2018 IPR022211 Poly-beta-hydroxybutyrate polymerase N-terminal Alide_4505 c782bb84e08bf7ca42af3161e4ab9c5a 177 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 57 103 1.3E-11 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_4505 c782bb84e08bf7ca42af3161e4ab9c5a 177 SUPERFAMILY SSF69118 1 175 2.76E-46 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_4505 c782bb84e08bf7ca42af3161e4ab9c5a 177 Pfam PF02627 Carboxymuconolactone decarboxylase family 42 121 1.5E-14 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_4505 c782bb84e08bf7ca42af3161e4ab9c5a 177 Gene3D G3DSA:1.20.1290.10 14 175 1.3E-39 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_4058 2fb65308de47f590ebb6a0e0db69c92a 662 Pfam PF10136 Site-specific recombinase 23 657 5.5E-235 T 12-10-2018 IPR011385 Putative site-specific recombinase Gcr Alide_4058 2fb65308de47f590ebb6a0e0db69c92a 662 PIRSF PIRSF015380 2 661 3.7E-180 T 12-10-2018 IPR011385 Putative site-specific recombinase Gcr Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 Gene3D G3DSA:3.40.1410.10 97 232 5.0E-30 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 SUPERFAMILY SSF64288 68 238 1.88E-39 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 SMART SM00866 99 236 1.3E-30 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 14 241 8.9E-89 T 12-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 78 3.8E-19 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 SUPERFAMILY SSF46785 12 82 2.03E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 SMART SM00345 19 78 1.7E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 1.5E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 1.5E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 Pfam PF07702 UTRA domain 99 236 8.1E-30 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_2778 ff781d63bc8e7b47dddb4dce7d679de5 241 Gene3D G3DSA:1.10.10.10 13 82 7.1E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 Pfam PF00873 AcrB/AcrD/AcrF family 16 1031 2.7E-159 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 Gene3D G3DSA:3.30.70.1440 675 878 7.7E-248 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 Gene3D G3DSA:3.30.70.1430 576 674 7.7E-248 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 Gene3D G3DSA:3.30.2090.10 726 814 7.7E-248 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 SUPERFAMILY SSF82866 303 511 2.35E-33 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 SUPERFAMILY SSF82714 194 275 2.49E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 Gene3D G3DSA:3.30.70.1320 145 336 7.7E-248 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 SUPERFAMILY SSF82693 49 144 6.54E-19 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 SUPERFAMILY SSF82714 728 812 2.75E-15 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 Gene3D G3DSA:1.20.1640.10 525 1030 7.7E-248 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 PRINTS PR00702 Acriflavin resistance protein family signature 406 430 1.0E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 1.0E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 PRINTS PR00702 Acriflavin resistance protein family signature 484 507 1.0E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 1.0E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 PRINTS PR00702 Acriflavin resistance protein family signature 378 399 1.0E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 PRINTS PR00702 Acriflavin resistance protein family signature 459 482 1.0E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 PRINTS PR00702 Acriflavin resistance protein family signature 637 651 1.0E-19 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 Gene3D G3DSA:3.30.2090.10 188 278 7.7E-248 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 SUPERFAMILY SSF82693 145 333 2.88E-19 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 Gene3D G3DSA:1.20.1640.10 22 524 7.7E-248 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 SUPERFAMILY SSF82866 812 1037 2.35E-39 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 SUPERFAMILY SSF82693 578 665 3.66E-6 T 12-10-2018 Alide_2990 ca3a8542841a3e6cdec635f20ccb722a 1039 Gene3D G3DSA:3.30.70.1430 49 822 7.7E-248 T 12-10-2018 Alide_3255 ddc966c7270172ecd0cb94b80c9fe0d9 339 PIRSF PIRSF006621 1 331 2.5E-75 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Alide_3255 ddc966c7270172ecd0cb94b80c9fe0d9 339 Gene3D G3DSA:3.20.20.70 8 249 1.2E-73 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3255 ddc966c7270172ecd0cb94b80c9fe0d9 339 Pfam PF01207 Dihydrouridine synthase (Dus) 13 243 1.5E-65 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Alide_3255 ddc966c7270172ecd0cb94b80c9fe0d9 339 SUPERFAMILY SSF51395 10 303 1.45E-66 T 12-10-2018 Alide_3255 ddc966c7270172ecd0cb94b80c9fe0d9 339 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 16 322 51.902 T 12-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 Alide_3255 ddc966c7270172ecd0cb94b80c9fe0d9 339 Gene3D G3DSA:1.20.225.30 255 326 5.4E-10 T 12-10-2018 Alide_3255 ddc966c7270172ecd0cb94b80c9fe0d9 339 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 100 118 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Alide_2160 639c1f1a319ab9045cd905c68e3615b6 402 Pfam PF02239 Cytochrome D1 heme domain 37 396 4.8E-103 T 12-10-2018 Alide_2160 639c1f1a319ab9045cd905c68e3615b6 402 Gene3D G3DSA:2.140.10.20 21 399 1.6E-49 T 12-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily Alide_2160 639c1f1a319ab9045cd905c68e3615b6 402 SUPERFAMILY SSF51004 37 400 2.75E-73 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Gene3D G3DSA:3.40.50.300 552 765 3.2E-89 T 12-10-2018 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 SUPERFAMILY SSF52540 548 849 7.65E-81 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Gene3D G3DSA:3.40.50.300 147 340 7.7E-75 T 12-10-2018 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 67 4.8E-10 T 12-10-2018 IPR004176 Clp, N-terminal Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 143 6.0E-12 T 12-10-2018 IPR004176 Clp, N-terminal Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 201 333 1.8E-13 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Gene3D G3DSA:3.40.50.300 341 546 3.3E-69 T 12-10-2018 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 850 0.0 T 12-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 292 304 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 SUPERFAMILY SSF81923 4 154 1.96E-37 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Gene3D G3DSA:1.10.8.60 767 858 6.7E-23 T 12-10-2018 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Pfam PF07724 AAA domain (Cdc48 subfamily) 598 760 4.2E-54 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 SMART SM00382 196 341 6.7E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 SMART SM00382 599 741 6.5E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 710 724 1.4E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 603 621 1.4E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 648 666 1.4E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 677 695 1.4E-42 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 633 651 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 SMART SM01086 767 858 6.4E-33 T 12-10-2018 IPR019489 Clp ATPase, C-terminal Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 SUPERFAMILY SSF52540 157 546 8.03E-99 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 767 845 1.7E-22 T 12-10-2018 IPR019489 Clp ATPase, C-terminal Alide_3260 d301d4e28f97a50892e72c19b8ae2eaa 867 Gene3D G3DSA:1.10.1780.10 1 146 3.6E-29 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Alide_1358 a23319746947d3102d57389d835157cc 145 ProSitePatterns PS00892 HIT domain signature. 95 113 - T 12-10-2018 IPR019808 Histidine triad, conserved site Alide_1358 a23319746947d3102d57389d835157cc 145 Pfam PF01230 HIT domain 21 116 5.4E-24 T 12-10-2018 IPR001310 Histidine triad (HIT) protein Alide_1358 a23319746947d3102d57389d835157cc 145 Gene3D G3DSA:3.30.428.10 5 145 8.0E-42 T 12-10-2018 IPR036265 HIT-like superfamily Alide_1358 a23319746947d3102d57389d835157cc 145 SUPERFAMILY SSF54197 12 145 2.63E-39 T 12-10-2018 IPR036265 HIT-like superfamily Alide_1358 a23319746947d3102d57389d835157cc 145 PRINTS PR00332 Histidine triad family signature 102 112 2.1E-13 T 12-10-2018 IPR001310 Histidine triad (HIT) protein Alide_1358 a23319746947d3102d57389d835157cc 145 PRINTS PR00332 Histidine triad family signature 14 30 2.1E-13 T 12-10-2018 IPR001310 Histidine triad (HIT) protein Alide_1358 a23319746947d3102d57389d835157cc 145 PRINTS PR00332 Histidine triad family signature 35 53 2.1E-13 T 12-10-2018 IPR001310 Histidine triad (HIT) protein Alide_1152 c02f9036ad208a1c2a9c452b96f76ea1 120 SUPERFAMILY SSF69118 13 109 1.02E-28 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_1152 c02f9036ad208a1c2a9c452b96f76ea1 120 Pfam PF02627 Carboxymuconolactone decarboxylase family 26 108 1.7E-22 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_1152 c02f9036ad208a1c2a9c452b96f76ea1 120 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 43 91 5.1E-14 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_1152 c02f9036ad208a1c2a9c452b96f76ea1 120 Gene3D G3DSA:1.20.1290.10 1 114 9.0E-35 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_1375 755d6d461fc99546ee434098731dcbc2 522 Gene3D G3DSA:3.40.190.10 34 269 4.4E-128 T 12-10-2018 Alide_1375 755d6d461fc99546ee434098731dcbc2 522 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 65 432 8.3E-92 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain Alide_1375 755d6d461fc99546ee434098731dcbc2 522 Gene3D G3DSA:3.10.105.10 270 500 4.4E-128 T 12-10-2018 Alide_1375 755d6d461fc99546ee434098731dcbc2 522 SUPERFAMILY SSF53850 19 504 5.79E-129 T 12-10-2018 Alide_1375 755d6d461fc99546ee434098731dcbc2 522 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 70 91 - T 12-10-2018 IPR023765 Solute-binding protein family 5, conserved site Alide_1375 755d6d461fc99546ee434098731dcbc2 522 PIRSF PIRSF002741 6 517 1.1E-105 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Alide_1375 755d6d461fc99546ee434098731dcbc2 522 Gene3D G3DSA:3.90.76.10 56 166 4.4E-128 T 12-10-2018 Alide_1001 a47fcf9a31c6c807c033fdfb1e123885 286 SUPERFAMILY SSF53850 14 262 6.3E-57 T 12-10-2018 Alide_1001 a47fcf9a31c6c807c033fdfb1e123885 286 Gene3D G3DSA:3.40.190.10 32 254 3.8E-58 T 12-10-2018 Alide_1001 a47fcf9a31c6c807c033fdfb1e123885 286 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 261 4.5E-51 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1001 a47fcf9a31c6c807c033fdfb1e123885 286 Gene3D G3DSA:3.40.190.10 128 221 3.8E-58 T 12-10-2018 Alide_1001 a47fcf9a31c6c807c033fdfb1e123885 286 SMART SM00062 40 263 2.9E-59 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_0932 13124f0a679adb58c7d30826b832ad8c 214 Gene3D G3DSA:1.10.530.10 81 205 3.0E-21 T 12-10-2018 Alide_0932 13124f0a679adb58c7d30826b832ad8c 214 SUPERFAMILY SSF53955 68 201 2.85E-29 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_0932 13124f0a679adb58c7d30826b832ad8c 214 Pfam PF01464 Transglycosylase SLT domain 101 191 1.1E-13 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_0645 e6c804861bb195f6b9bc41d9fb4d1086 181 Gene3D G3DSA:2.60.120.10 1 180 8.2E-77 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_0645 e6c804861bb195f6b9bc41d9fb4d1086 181 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 175 5.0E-79 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Alide_0645 e6c804861bb195f6b9bc41d9fb4d1086 181 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 4 178 2.4E-85 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Alide_0645 e6c804861bb195f6b9bc41d9fb4d1086 181 SUPERFAMILY SSF51182 1 178 4.54E-80 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_0645 e6c804861bb195f6b9bc41d9fb4d1086 181 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 175 3.3E-76 T 12-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 SMART SM00304 182 234 7.8E-13 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 Pfam PF00672 HAMP domain 184 231 2.4E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 SUPERFAMILY SSF55874 494 618 2.44E-16 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 SUPERFAMILY SSF158472 184 231 3.53E-9 T 12-10-2018 Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 31 131 3.8E-20 T 12-10-2018 IPR029095 NarX-like, N-terminal Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 529 619 1.1E-8 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 Gene3D G3DSA:1.20.1480.50 141 241 3.6E-7 T 12-10-2018 Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 SMART SM00387 527 621 2.6E-13 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 Pfam PF07730 Histidine kinase 422 488 4.7E-15 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 PIRSF PIRSF003167 1 630 4.0E-163 T 12-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 SUPERFAMILY SSF55781 240 405 2.62E-15 T 12-10-2018 Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 Gene3D G3DSA:3.30.565.10 489 619 1.7E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 Pfam PF01590 GAF domain 270 403 2.7E-5 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_0504 a84fac8f9a400822ae3f94c93d7f2dae 638 Gene3D G3DSA:3.30.450.40 248 410 3.1E-17 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0092 9e97b7d0be9930f00ffe782136fb32f1 385 SUPERFAMILY SSF56645 13 247 2.75E-65 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0092 9e97b7d0be9930f00ffe782136fb32f1 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 130 225 7.2E-23 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0092 9e97b7d0be9930f00ffe782136fb32f1 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 126 2.3E-24 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0092 9e97b7d0be9930f00ffe782136fb32f1 385 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 132 144 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0092 9e97b7d0be9930f00ffe782136fb32f1 385 Gene3D G3DSA:1.10.540.10 7 127 1.3E-27 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0092 9e97b7d0be9930f00ffe782136fb32f1 385 Gene3D G3DSA:1.20.140.10 241 385 1.9E-5 T 12-10-2018 Alide_0092 9e97b7d0be9930f00ffe782136fb32f1 385 Gene3D G3DSA:2.40.110.10 129 240 1.5E-34 T 12-10-2018 Alide_0852 2b54a686ee06cfcabe9b53ef4676eaec 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.1E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0852 2b54a686ee06cfcabe9b53ef4676eaec 308 Gene3D G3DSA:3.40.190.290 95 290 8.1E-36 T 12-10-2018 Alide_0852 2b54a686ee06cfcabe9b53ef4676eaec 308 Gene3D G3DSA:1.10.10.10 7 86 7.9E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0852 2b54a686ee06cfcabe9b53ef4676eaec 308 SUPERFAMILY SSF53850 94 292 2.53E-35 T 12-10-2018 Alide_0852 2b54a686ee06cfcabe9b53ef4676eaec 308 Pfam PF03466 LysR substrate binding domain 94 290 1.7E-31 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0852 2b54a686ee06cfcabe9b53ef4676eaec 308 SUPERFAMILY SSF46785 5 115 8.33E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3936 9aabd1df660288aebd8471f2778aa359 390 SUPERFAMILY SSF51713 1 382 1.18E-148 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Alide_3936 9aabd1df660288aebd8471f2778aa359 390 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 12 383 7.2E-145 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Alide_3936 9aabd1df660288aebd8471f2778aa359 390 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 12 384 9.7E-154 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Alide_3936 9aabd1df660288aebd8471f2778aa359 390 Gene3D G3DSA:3.20.20.105 1 389 4.8E-158 T 12-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Alide_3936 9aabd1df660288aebd8471f2778aa359 390 Pfam PF01702 Queuine tRNA-ribosyltransferase 130 382 1.3E-88 T 12-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Alide_3936 9aabd1df660288aebd8471f2778aa359 390 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 2 385 53.415 T 12-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Alide_1744 da3bb238fae4ee6f0fdd6fd1623e2345 292 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 174 253 2.9E-12 T 12-10-2018 IPR029095 NarX-like, N-terminal Alide_2110 c48470a5dc65901cce14828d59daf15a 420 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 254 412 5.4E-43 T 12-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain Alide_2110 c48470a5dc65901cce14828d59daf15a 420 Gene3D G3DSA:3.40.50.10840 5 236 2.3E-84 T 12-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily Alide_2110 c48470a5dc65901cce14828d59daf15a 420 SUPERFAMILY SSF142764 6 419 5.36E-127 T 12-10-2018 Alide_2110 c48470a5dc65901cce14828d59daf15a 420 Pfam PF07005 Putative sugar-binding N-terminal domain 6 231 3.1E-69 T 12-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain Alide_2110 c48470a5dc65901cce14828d59daf15a 420 Gene3D G3DSA:3.40.980.20 242 420 1.0E-56 T 12-10-2018 Alide_2233 bb771057667dd3918790291775bdfe20 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 68 3.1E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2233 bb771057667dd3918790291775bdfe20 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 8.1E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2233 bb771057667dd3918790291775bdfe20 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 8.1E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2233 bb771057667dd3918790291775bdfe20 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 8.1E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2233 bb771057667dd3918790291775bdfe20 299 Gene3D G3DSA:3.40.190.10 104 289 8.2E-54 T 12-10-2018 Alide_2233 bb771057667dd3918790291775bdfe20 299 Gene3D G3DSA:1.10.10.10 8 96 4.5E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2233 bb771057667dd3918790291775bdfe20 299 Gene3D G3DSA:3.40.190.10 164 262 8.2E-54 T 12-10-2018 Alide_2233 bb771057667dd3918790291775bdfe20 299 Pfam PF03466 LysR substrate binding domain 92 293 1.5E-35 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2233 bb771057667dd3918790291775bdfe20 299 SUPERFAMILY SSF53850 94 295 8.32E-38 T 12-10-2018 Alide_2233 bb771057667dd3918790291775bdfe20 299 SUPERFAMILY SSF46785 6 86 1.58E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1535 f2cbb63a5254b0b557afd71b1f242866 399 PIRSF PIRSF000484 1 388 6.8E-66 T 12-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Alide_1535 f2cbb63a5254b0b557afd71b1f242866 399 SUPERFAMILY SSF54675 1 134 6.48E-44 T 12-10-2018 Alide_1535 f2cbb63a5254b0b557afd71b1f242866 399 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 162 396 5.1E-70 T 12-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Alide_1535 f2cbb63a5254b0b557afd71b1f242866 399 Gene3D G3DSA:3.20.140.10 1 398 9.1E-148 T 12-10-2018 Alide_1535 f2cbb63a5254b0b557afd71b1f242866 399 SUPERFAMILY SSF51690 116 395 7.65E-84 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Alide_1535 f2cbb63a5254b0b557afd71b1f242866 399 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 397 45.242 T 12-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Alide_1535 f2cbb63a5254b0b557afd71b1f242866 399 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 2 396 1.0E-137 T 12-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Alide_0207 44e17b5ef03c26304260a122d9aa46fe 101 Pfam PF09827 CRISPR associated protein Cas2 1 79 6.6E-18 T 12-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 Alide_0207 44e17b5ef03c26304260a122d9aa46fe 101 SUPERFAMILY SSF143430 1 82 1.96E-13 T 12-10-2018 Alide_0207 44e17b5ef03c26304260a122d9aa46fe 101 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 1 89 1.3E-18 T 12-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Alide_0207 44e17b5ef03c26304260a122d9aa46fe 101 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 1 100 11.915 T 12-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 36 440 6.0E-193 T 12-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 73 244 2.7E-45 T 12-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 358 438 1.1E-28 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 SMART SM00928 354 399 1.9E-24 T 12-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 367 378 - T 12-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 SUPERFAMILY SSF140490 351 441 1.26E-34 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 Pfam PF10531 SLBB domain 268 316 2.3E-13 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 Gene3D G3DSA:1.20.1440.230 352 449 2.2E-33 T 12-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 SUPERFAMILY SSF142984 266 349 3.01E-26 T 12-10-2018 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 Gene3D G3DSA:3.10.20.600 257 351 6.4E-36 T 12-10-2018 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 SUPERFAMILY SSF142019 35 265 1.07E-81 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1051 5f2c582da917fe8a82f7f49f3c5918a0 449 Gene3D G3DSA:3.40.50.11540 78 255 2.4E-75 T 12-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3507 eacf765d429c1d5cb1a45ce70a35904e 209 Gene3D G3DSA:3.40.190.150 135 199 3.1E-66 T 12-10-2018 Alide_3507 eacf765d429c1d5cb1a45ce70a35904e 209 Gene3D G3DSA:3.40.190.10 20 134 3.1E-66 T 12-10-2018 Alide_3507 eacf765d429c1d5cb1a45ce70a35904e 209 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 19 205 9.8E-57 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3507 eacf765d429c1d5cb1a45ce70a35904e 209 SUPERFAMILY SSF53850 40 170 3.35E-11 T 12-10-2018 Alide_4400 6187c03891781b9d275c8458abbf253d 184 SUPERFAMILY SSF53271 11 181 2.75E-54 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_4400 6187c03891781b9d275c8458abbf253d 184 Gene3D G3DSA:3.40.50.2020 3 184 1.0E-64 T 12-10-2018 Alide_4400 6187c03891781b9d275c8458abbf253d 184 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 10 181 37.596 T 12-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 Alide_4400 6187c03891781b9d275c8458abbf253d 184 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 10 180 2.0E-65 T 12-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 Alide_4400 6187c03891781b9d275c8458abbf253d 184 Pfam PF00156 Phosphoribosyl transferase domain 37 161 5.1E-16 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Alide_1408 8306cab1a1d964a62b6f47fa89647c5e 284 Pfam PF04794 YdjC-like protein 14 269 1.3E-46 T 12-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like Alide_1408 8306cab1a1d964a62b6f47fa89647c5e 284 Gene3D G3DSA:3.20.20.370 10 279 7.9E-33 T 12-10-2018 Alide_1408 8306cab1a1d964a62b6f47fa89647c5e 284 SUPERFAMILY SSF88713 12 276 2.0E-50 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Alide_1343 2e193441f1c67817df45833d228b2ffd 263 Gene3D G3DSA:1.10.10.10 5 104 1.4E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1343 2e193441f1c67817df45833d228b2ffd 263 Gene3D G3DSA:2.40.50.100 188 253 8.2E-21 T 12-10-2018 Alide_1343 2e193441f1c67817df45833d228b2ffd 263 Gene3D G3DSA:2.40.50.100 124 258 8.2E-21 T 12-10-2018 Alide_1343 2e193441f1c67817df45833d228b2ffd 263 SUPERFAMILY SSF46785 21 100 1.41E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1343 2e193441f1c67817df45833d228b2ffd 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 85 6.3E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1343 2e193441f1c67817df45833d228b2ffd 263 PIRSF PIRSF005763 4 263 1.1E-48 T 12-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 Alide_1343 2e193441f1c67817df45833d228b2ffd 263 Pfam PF03459 TOBE domain 125 192 4.9E-14 T 12-10-2018 IPR005116 Transport-associated OB, type 1 Alide_1343 2e193441f1c67817df45833d228b2ffd 263 SUPERFAMILY SSF50331 124 193 1.41E-13 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_1834 a13f9535259aa5969da53dade47f79f5 369 Gene3D G3DSA:3.40.50.150 20 206 3.5E-18 T 12-10-2018 Alide_1834 a13f9535259aa5969da53dade47f79f5 369 SUPERFAMILY SSF53335 18 178 6.19E-24 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_1834 a13f9535259aa5969da53dade47f79f5 369 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 130 154 7.6E-8 T 12-10-2018 Alide_1834 a13f9535259aa5969da53dade47f79f5 369 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 41 55 7.6E-8 T 12-10-2018 Alide_1834 a13f9535259aa5969da53dade47f79f5 369 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 101 113 7.6E-8 T 12-10-2018 Alide_1834 a13f9535259aa5969da53dade47f79f5 369 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 104 110 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 Gene3D G3DSA:3.40.50.620 6 331 1.3E-113 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 332 36.176 T 12-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 4 331 5.1E-88 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 12-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 Gene3D G3DSA:1.10.240.10 197 299 1.3E-113 T 12-10-2018 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 SUPERFAMILY SSF160113 353 401 1.44E-10 T 12-10-2018 IPR036913 YegP-like superfamily Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 SUPERFAMILY SSF52374 5 331 3.43E-82 T 12-10-2018 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 Pfam PF07411 Domain of unknown function (DUF1508) 361 400 3.4E-6 T 12-10-2018 IPR010879 Domain of unknown function DUF1508 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 68 87 8.5E-18 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 202 212 8.5E-18 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 151 172 8.5E-18 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 8.5E-18 T 12-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Alide_3353 5bfa0094e152c1f84554b32362233c8e 433 Pfam PF00579 tRNA synthetases class I (W and Y) 4 281 1.1E-54 T 12-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0715 075b1f009493922428cd1af4f13c059b 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 4.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0715 075b1f009493922428cd1af4f13c059b 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 4.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0715 075b1f009493922428cd1af4f13c059b 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 4.7E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0715 075b1f009493922428cd1af4f13c059b 318 Gene3D G3DSA:3.40.190.10 109 303 6.0E-51 T 12-10-2018 Alide_0715 075b1f009493922428cd1af4f13c059b 318 Gene3D G3DSA:3.40.190.10 169 276 6.0E-51 T 12-10-2018 Alide_0715 075b1f009493922428cd1af4f13c059b 318 SUPERFAMILY SSF53850 99 307 1.13E-31 T 12-10-2018 Alide_0715 075b1f009493922428cd1af4f13c059b 318 Gene3D G3DSA:1.10.10.10 13 102 1.3E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0715 075b1f009493922428cd1af4f13c059b 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 72 3.7E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0715 075b1f009493922428cd1af4f13c059b 318 Pfam PF03466 LysR substrate binding domain 99 304 5.1E-30 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0715 075b1f009493922428cd1af4f13c059b 318 SUPERFAMILY SSF46785 13 94 1.28E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 Gene3D G3DSA:3.40.50.300 452 672 2.9E-69 T 12-10-2018 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 TIGRFAM TIGR00017 cmk: cytidylate kinase 456 665 9.3E-65 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 ProSitePatterns PS00885 EPSP synthase signature 2. 357 375 - T 12-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 17 444 5.7E-122 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 ProSitePatterns PS00104 EPSP synthase signature 1. 94 108 - T 12-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 Hamap MF_00238 Cytidylate kinase [cmk]. 456 672 31.683 T 12-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 13 450 33.098 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 SUPERFAMILY SSF55205 11 444 1.96E-117 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 Gene3D G3DSA:3.65.10.10 23 235 4.3E-65 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 17 444 1.4E-129 T 12-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 Gene3D G3DSA:3.65.10.10 239 447 3.2E-65 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 Pfam PF02224 Cytidylate kinase 458 666 1.0E-64 T 12-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Alide_1851 4b2ebfa4a113a25273ddc89106318fdd 674 SUPERFAMILY SSF52540 456 671 1.22E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0670 939e717068a67b40a57114216772eb6b 214 Gene3D G3DSA:1.10.530.10 78 214 6.5E-42 T 12-10-2018 Alide_0670 939e717068a67b40a57114216772eb6b 214 SUPERFAMILY SSF53955 77 212 1.18E-41 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_0670 939e717068a67b40a57114216772eb6b 214 Pfam PF13511 Domain of unknown function (DUF4124) 16 61 2.9E-7 T 12-10-2018 IPR025392 Domain of unknown function DUF4124 Alide_0670 939e717068a67b40a57114216772eb6b 214 Pfam PF01464 Transglycosylase SLT domain 84 189 4.6E-29 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_0670 939e717068a67b40a57114216772eb6b 214 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 101 129 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 SUPERFAMILY SSF54211 258 458 3.07E-38 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 452 7.1E-190 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 Gene3D G3DSA:3.30.230.10 334 459 4.2E-15 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 Gene3D G3DSA:3.40.50.300 68 286 1.7E-41 T 12-10-2018 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 SUPERFAMILY SSF52540 72 296 1.52E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 Pfam PF13481 AAA domain 68 225 7.7E-17 T 12-10-2018 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 Hamap MF_01498 DNA repair protein RadA [radA]. 21 457 43.591 T 12-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 PRINTS PR01874 DNA repair protein radA signature 85 113 2.7E-93 T 12-10-2018 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 PRINTS PR01874 DNA repair protein radA signature 127 144 2.7E-93 T 12-10-2018 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 PRINTS PR01874 DNA repair protein radA signature 10 34 2.7E-93 T 12-10-2018 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 PRINTS PR01874 DNA repair protein radA signature 177 201 2.7E-93 T 12-10-2018 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 PRINTS PR01874 DNA repair protein radA signature 251 277 2.7E-93 T 12-10-2018 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 PRINTS PR01874 DNA repair protein radA signature 216 244 2.7E-93 T 12-10-2018 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 PRINTS PR01874 DNA repair protein radA signature 324 347 2.7E-93 T 12-10-2018 Alide_0293 db4f7433daea145bfd6cc6dad0d7315d 460 SMART SM00382 93 247 1.4E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3120 052f4386e32bba072ced45b1460d5f91 492 SUPERFAMILY SSF48024 46 157 2.22E-35 T 12-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 Alide_3120 052f4386e32bba072ced45b1460d5f91 492 SMART SM00382 243 443 7.5E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3120 052f4386e32bba072ced45b1460d5f91 492 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 48 485 5.3E-177 T 12-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 Alide_3120 052f4386e32bba072ced45b1460d5f91 492 Gene3D G3DSA:3.40.50.300 208 488 3.5E-109 T 12-10-2018 Alide_3120 052f4386e32bba072ced45b1460d5f91 492 Pfam PF03796 DnaB-like helicase C terminal domain 226 483 7.1E-114 T 12-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Alide_3120 052f4386e32bba072ced45b1460d5f91 492 SUPERFAMILY SSF52540 224 476 3.6E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3120 052f4386e32bba072ced45b1460d5f91 492 Pfam PF00772 DnaB-like helicase N terminal domain 48 149 1.1E-32 T 12-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Alide_3120 052f4386e32bba072ced45b1460d5f91 492 Gene3D G3DSA:1.10.860.10 40 207 3.5E-52 T 12-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Alide_3310 0e76172a47caee2198af50fb2d513323 347 Gene3D G3DSA:1.10.3470.10 18 343 8.0E-80 T 12-10-2018 IPR037294 ABC transporter, BtuC-like Alide_3310 0e76172a47caee2198af50fb2d513323 347 Pfam PF01032 FecCD transport family 35 340 5.8E-74 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Alide_3310 0e76172a47caee2198af50fb2d513323 347 SUPERFAMILY SSF81345 19 341 7.98E-68 T 12-10-2018 IPR037294 ABC transporter, BtuC-like Alide_2555 8b23f0b5fc60c88f0869424ef5c5fd2c 505 Gene3D G3DSA:3.40.605.10 31 465 7.5E-147 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_2555 8b23f0b5fc60c88f0869424ef5c5fd2c 505 SUPERFAMILY SSF53720 9 491 5.24E-147 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_2555 8b23f0b5fc60c88f0869424ef5c5fd2c 505 Pfam PF00171 Aldehyde dehydrogenase family 22 484 2.9E-140 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_2555 8b23f0b5fc60c88f0869424ef5c5fd2c 505 Gene3D G3DSA:3.40.309.10 257 457 7.5E-147 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_2555 8b23f0b5fc60c88f0869424ef5c5fd2c 505 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_2555 8b23f0b5fc60c88f0869424ef5c5fd2c 505 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 12 488 1.4E-220 T 12-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 Alide_3579 8000614c39ca09d1560c692ffd4bc850 288 Pfam PF10065 Uncharacterized conserved protein (DUF2303) 21 288 1.0E-62 T 12-10-2018 IPR019276 Protein of unkown function DUF2303 Alide_2256 ae3f0d71f522d3c1f1ef0acdb94f4c47 182 Pfam PF14803 Nudix N-terminal 8 42 1.1E-14 T 12-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 Alide_2256 ae3f0d71f522d3c1f1ef0acdb94f4c47 182 Pfam PF00293 NUDIX domain 48 150 2.6E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Alide_2256 ae3f0d71f522d3c1f1ef0acdb94f4c47 182 Gene3D G3DSA:3.90.79.10 43 182 1.2E-35 T 12-10-2018 Alide_2256 ae3f0d71f522d3c1f1ef0acdb94f4c47 182 SUPERFAMILY SSF55811 8 170 3.38E-34 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_2256 ae3f0d71f522d3c1f1ef0acdb94f4c47 182 Gene3D G3DSA:2.20.70.10 6 42 1.4E-12 T 12-10-2018 Alide_2256 ae3f0d71f522d3c1f1ef0acdb94f4c47 182 ProSitePatterns PS00893 Nudix box signature. 77 98 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Alide_3399 b9f6fb3e45e0d014d62958e90f58df78 363 Hamap MF_02040 Iron-sulfur cluster carrier protein. 92 340 37.629 T 12-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein Alide_3399 b9f6fb3e45e0d014d62958e90f58df78 363 SUPERFAMILY SSF52540 90 324 2.0E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3399 b9f6fb3e45e0d014d62958e90f58df78 363 Gene3D G3DSA:3.40.50.300 88 338 4.5E-87 T 12-10-2018 Alide_3399 b9f6fb3e45e0d014d62958e90f58df78 363 SUPERFAMILY SSF117916 1 85 6.87E-17 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Alide_3399 b9f6fb3e45e0d014d62958e90f58df78 363 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 96 339 4.3E-103 T 12-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Alide_3399 b9f6fb3e45e0d014d62958e90f58df78 363 ProSitePatterns PS01215 Mrp family signature. 203 219 - T 12-10-2018 IPR000808 Mrp, conserved site GO:0005524 Alide_3399 b9f6fb3e45e0d014d62958e90f58df78 363 Pfam PF01883 Iron-sulfur cluster assembly protein 5 77 1.0E-20 T 12-10-2018 IPR002744 MIP18 family-like Alide_3399 b9f6fb3e45e0d014d62958e90f58df78 363 Gene3D G3DSA:3.30.300.130 1 87 1.7E-9 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Alide_0798 7229a8e6e9b221c34fe2cd68b0a6cd8b 121 SUPERFAMILY SSF54523 10 51 1.26E-5 T 12-10-2018 Alide_0798 7229a8e6e9b221c34fe2cd68b0a6cd8b 121 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0798 7229a8e6e9b221c34fe2cd68b0a6cd8b 121 TIGRFAM TIGR01707 gspI: type II secretion system protein I 9 105 3.9E-16 T 12-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 Alide_0798 7229a8e6e9b221c34fe2cd68b0a6cd8b 121 SUPERFAMILY SSF54523 45 116 2.28E-12 T 12-10-2018 Alide_0798 7229a8e6e9b221c34fe2cd68b0a6cd8b 121 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 4.6E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0798 7229a8e6e9b221c34fe2cd68b0a6cd8b 121 Pfam PF02501 Type II secretion system (T2SS), protein I 45 119 4.5E-22 T 12-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 Alide_0798 7229a8e6e9b221c34fe2cd68b0a6cd8b 121 Gene3D G3DSA:3.30.1300.30 37 119 2.9E-13 T 12-10-2018 Alide_0798 7229a8e6e9b221c34fe2cd68b0a6cd8b 121 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 29 5.2E-9 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 12-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 SMART SM00344 4 113 3.7E-46 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 SUPERFAMILY SSF54909 66 153 2.55E-17 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 SUPERFAMILY SSF46785 4 63 1.8E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 Gene3D G3DSA:1.10.10.10 1 55 3.3E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 Pfam PF01037 Lrp/AsnC ligand binding domain 70 144 1.2E-17 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 Gene3D G3DSA:3.30.70.920 56 149 3.2E-22 T 12-10-2018 Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 5.7E-19 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 5.7E-19 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 5.7E-19 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_4225 f956b1f3a0af1812931845cc76df60b2 170 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 1.3E-19 T 12-10-2018 Alide_0345 d106771a89c33de9e7e9d71e6d506357 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 321 7.4E-90 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0345 d106771a89c33de9e7e9d71e6d506357 326 SUPERFAMILY SSF53850 114 287 4.42E-18 T 12-10-2018 Alide_0345 d106771a89c33de9e7e9d71e6d506357 326 Gene3D G3DSA:3.40.190.150 30 316 3.7E-115 T 12-10-2018 Alide_0345 d106771a89c33de9e7e9d71e6d506357 326 PIRSF PIRSF017082 1 326 9.6E-86 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0345 d106771a89c33de9e7e9d71e6d506357 326 Gene3D G3DSA:3.40.190.10 128 251 3.7E-115 T 12-10-2018 Alide_0374 f6c8e325927863fc20222b372b1b262a 496 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 18 487 3.4E-168 T 12-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_0374 f6c8e325927863fc20222b372b1b262a 496 Pfam PF01425 Amidase 28 476 1.3E-149 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_0374 f6c8e325927863fc20222b372b1b262a 496 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 14 487 90.605 T 12-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_0374 f6c8e325927863fc20222b372b1b262a 496 SUPERFAMILY SSF75304 6 493 1.09E-155 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_0374 f6c8e325927863fc20222b372b1b262a 496 Gene3D G3DSA:3.90.1300.10 5 496 1.8E-189 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_4306 5e5ada26e3d9e443f6293db8fec0a673 325 Gene3D G3DSA:3.40.190.150 30 315 1.5E-104 T 12-10-2018 Alide_4306 5e5ada26e3d9e443f6293db8fec0a673 325 Gene3D G3DSA:3.40.190.10 127 250 1.5E-104 T 12-10-2018 Alide_4306 5e5ada26e3d9e443f6293db8fec0a673 325 SUPERFAMILY SSF53850 114 295 5.65E-14 T 12-10-2018 Alide_4306 5e5ada26e3d9e443f6293db8fec0a673 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 321 2.2E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4306 5e5ada26e3d9e443f6293db8fec0a673 325 PIRSF PIRSF017082 1 325 1.7E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0498 ad4556e0de946f377ddd88465987b762 497 SUPERFAMILY SSF56176 17 229 3.83E-63 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_0498 ad4556e0de946f377ddd88465987b762 497 Pfam PF02913 FAD linked oxidases, C-terminal domain 229 469 7.9E-66 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Alide_0498 ad4556e0de946f377ddd88465987b762 497 Pfam PF01565 FAD binding domain 54 192 2.4E-37 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Alide_0498 ad4556e0de946f377ddd88465987b762 497 Gene3D G3DSA:3.30.70.2740 348 429 6.0E-8 T 12-10-2018 Alide_0498 ad4556e0de946f377ddd88465987b762 497 Gene3D G3DSA:1.10.45.10 430 470 9.1E-8 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Alide_0498 ad4556e0de946f377ddd88465987b762 497 SUPERFAMILY SSF55103 202 472 1.54E-68 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Alide_0498 ad4556e0de946f377ddd88465987b762 497 Gene3D G3DSA:3.30.465.40 16 249 2.3E-57 T 12-10-2018 Alide_0996 e7d7c1b8847ae33032833136416b6b83 406 Pfam PF00155 Aminotransferase class I and II 30 389 2.7E-67 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_0996 e7d7c1b8847ae33032833136416b6b83 406 SUPERFAMILY SSF53383 2 394 1.9E-108 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_0996 e7d7c1b8847ae33032833136416b6b83 406 Gene3D G3DSA:3.40.640.10 61 284 5.7E-128 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_0996 e7d7c1b8847ae33032833136416b6b83 406 Gene3D G3DSA:3.90.1150.10 24 388 5.7E-128 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_0996 e7d7c1b8847ae33032833136416b6b83 406 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Alide_4610 5db420eb2a547d6b57ec7f70a9e5ba5b 105 PRINTS PR00606 Class ID cytochrome C signature 81 91 1.4E-21 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Alide_4610 5db420eb2a547d6b57ec7f70a9e5ba5b 105 PRINTS PR00606 Class ID cytochrome C signature 43 56 1.4E-21 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Alide_4610 5db420eb2a547d6b57ec7f70a9e5ba5b 105 PRINTS PR00606 Class ID cytochrome C signature 93 103 1.4E-21 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Alide_4610 5db420eb2a547d6b57ec7f70a9e5ba5b 105 PRINTS PR00606 Class ID cytochrome C signature 66 79 1.4E-21 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Alide_4610 5db420eb2a547d6b57ec7f70a9e5ba5b 105 PRINTS PR00606 Class ID cytochrome C signature 28 41 1.4E-21 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Alide_4610 5db420eb2a547d6b57ec7f70a9e5ba5b 105 SUPERFAMILY SSF46626 28 104 3.05E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_4610 5db420eb2a547d6b57ec7f70a9e5ba5b 105 Gene3D G3DSA:1.10.760.10 25 105 9.6E-30 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_4610 5db420eb2a547d6b57ec7f70a9e5ba5b 105 Pfam PF00034 Cytochrome c 31 105 9.1E-5 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2732 66dc6266842b517514e4aaba544a8ba4 620 Gene3D G3DSA:2.130.10.10 586 620 7.4E-6 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Alide_2732 66dc6266842b517514e4aaba544a8ba4 620 Pfam PF11339 Protein of unknown function (DUF3141) 33 570 3.7E-209 T 12-10-2018 IPR024501 Protein of unknown function DUF3141 Alide_2732 66dc6266842b517514e4aaba544a8ba4 620 SUPERFAMILY SSF53474 60 401 7.69E-24 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2732 66dc6266842b517514e4aaba544a8ba4 620 Gene3D G3DSA:3.40.50.1820 106 392 5.5E-8 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2991 01359b56ae0d10b5d25a5330107b9bf4 423 Gene3D G3DSA:1.10.287.470 128 193 1.1E-66 T 12-10-2018 Alide_2991 01359b56ae0d10b5d25a5330107b9bf4 423 Gene3D G3DSA:2.40.30.170 79 314 1.1E-66 T 12-10-2018 Alide_2991 01359b56ae0d10b5d25a5330107b9bf4 423 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 81 296 3.5E-19 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_2991 01359b56ae0d10b5d25a5330107b9bf4 423 Gene3D G3DSA:2.40.420.20 72 392 1.1E-66 T 12-10-2018 Alide_2991 01359b56ae0d10b5d25a5330107b9bf4 423 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 70 394 2.2E-71 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_2991 01359b56ae0d10b5d25a5330107b9bf4 423 Gene3D G3DSA:2.40.50.100 94 240 1.1E-66 T 12-10-2018 Alide_2991 01359b56ae0d10b5d25a5330107b9bf4 423 SUPERFAMILY SSF111369 83 296 5.36E-22 T 12-10-2018 Alide_2568 32c083fbcf604f00fed0735039143ddc 328 Gene3D G3DSA:3.40.190.150 34 318 6.9E-102 T 12-10-2018 Alide_2568 32c083fbcf604f00fed0735039143ddc 328 SUPERFAMILY SSF53850 119 288 7.06E-9 T 12-10-2018 Alide_2568 32c083fbcf604f00fed0735039143ddc 328 PIRSF PIRSF017082 3 327 3.4E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2568 32c083fbcf604f00fed0735039143ddc 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 324 3.3E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2568 32c083fbcf604f00fed0735039143ddc 328 Gene3D G3DSA:3.40.190.10 132 253 6.9E-102 T 12-10-2018 Alide_3145 477df0a727050c444ba959b513c1a15a 272 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 255 31.289 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3145 477df0a727050c444ba959b513c1a15a 272 Pfam PF01416 tRNA pseudouridine synthase 8 100 2.3E-8 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3145 477df0a727050c444ba959b513c1a15a 272 Pfam PF01416 tRNA pseudouridine synthase 142 250 2.5E-27 T 12-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3145 477df0a727050c444ba959b513c1a15a 272 PIRSF PIRSF001430 1 265 3.9E-63 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3145 477df0a727050c444ba959b513c1a15a 272 Gene3D G3DSA:3.30.70.580 1 104 2.4E-35 T 12-10-2018 Alide_3145 477df0a727050c444ba959b513c1a15a 272 Gene3D G3DSA:3.30.70.660 105 252 8.4E-43 T 12-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 Alide_3145 477df0a727050c444ba959b513c1a15a 272 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 249 6.3E-60 T 12-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3145 477df0a727050c444ba959b513c1a15a 272 SUPERFAMILY SSF55120 1 263 3.31E-82 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_1912 6d924bd25bf855b62cf60aec4fe9316e 227 SUPERFAMILY SSF46894 129 224 2.83E-18 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_1912 6d924bd25bf855b62cf60aec4fe9316e 227 Gene3D G3DSA:3.40.50.2300 1 130 4.3E-34 T 12-10-2018 Alide_1912 6d924bd25bf855b62cf60aec4fe9316e 227 SUPERFAMILY SSF52172 2 121 1.57E-37 T 12-10-2018 IPR011006 CheY-like superfamily Alide_1912 6d924bd25bf855b62cf60aec4fe9316e 227 Pfam PF00072 Response regulator receiver domain 4 112 1.6E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1912 6d924bd25bf855b62cf60aec4fe9316e 227 SMART SM00862 150 223 1.7E-15 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_1912 6d924bd25bf855b62cf60aec4fe9316e 227 SMART SM00448 1 112 1.2E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1912 6d924bd25bf855b62cf60aec4fe9316e 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 223 4.4E-16 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_1912 6d924bd25bf855b62cf60aec4fe9316e 227 Gene3D G3DSA:1.10.10.10 131 227 3.2E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2651 b950243b6e82e2c84962a4210b2cd110 391 Pfam PF13378 Enolase C-terminal domain-like 162 373 5.4E-42 T 12-10-2018 IPR029065 Enolase C-terminal domain-like Alide_2651 b950243b6e82e2c84962a4210b2cd110 391 TIGRFAM TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases 16 381 4.4E-165 T 12-10-2018 IPR013370 Muconate/chloromuconate cycloisomerase GO:0018849|GO:0018850|GO:0030145 Alide_2651 b950243b6e82e2c84962a4210b2cd110 391 SUPERFAMILY SSF54826 15 140 3.09E-32 T 12-10-2018 Alide_2651 b950243b6e82e2c84962a4210b2cd110 391 Gene3D G3DSA:3.30.390.10 42 376 1.8E-115 T 12-10-2018 IPR029017 Enolase-like, N-terminal Alide_2651 b950243b6e82e2c84962a4210b2cd110 391 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 25 139 2.2E-29 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Alide_2651 b950243b6e82e2c84962a4210b2cd110 391 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 205 236 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 Alide_2651 b950243b6e82e2c84962a4210b2cd110 391 Gene3D G3DSA:3.20.20.120 132 365 1.8E-115 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_2651 b950243b6e82e2c84962a4210b2cd110 391 SMART SM00922 157 253 2.9E-13 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Alide_2651 b950243b6e82e2c84962a4210b2cd110 391 SUPERFAMILY SSF51604 139 379 1.97E-59 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_3849 2221076eea80b67643ffc7efb2b591c0 151 Gene3D G3DSA:2.30.330.10 59 150 1.4E-33 T 12-10-2018 IPR036429 SpoA-like superfamily Alide_3849 2221076eea80b67643ffc7efb2b591c0 151 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 67 141 7.2E-32 T 12-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 Alide_3849 2221076eea80b67643ffc7efb2b591c0 151 SUPERFAMILY SSF101801 66 148 1.29E-24 T 12-10-2018 IPR036429 SpoA-like superfamily Alide_3849 2221076eea80b67643ffc7efb2b591c0 151 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 69 139 2.2E-24 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) Alide_3849 2221076eea80b67643ffc7efb2b591c0 151 PRINTS PR00956 Flagellar motor switch protein FliN signature 102 115 1.2E-27 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Alide_3849 2221076eea80b67643ffc7efb2b591c0 151 PRINTS PR00956 Flagellar motor switch protein FliN signature 115 130 1.2E-27 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Alide_3849 2221076eea80b67643ffc7efb2b591c0 151 PRINTS PR00956 Flagellar motor switch protein FliN signature 69 85 1.2E-27 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Alide_3849 2221076eea80b67643ffc7efb2b591c0 151 PRINTS PR00956 Flagellar motor switch protein FliN signature 86 102 1.2E-27 T 12-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.4E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 Gene3D G3DSA:3.40.190.10 163 273 8.0E-54 T 12-10-2018 Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 Gene3D G3DSA:1.10.10.10 1 85 1.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 SUPERFAMILY SSF53850 89 301 4.19E-35 T 12-10-2018 Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.1E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.1E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.1E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 Pfam PF03466 LysR substrate binding domain 90 296 2.5E-37 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 Gene3D G3DSA:3.40.190.10 88 291 8.0E-54 T 12-10-2018 Alide_4253 de60643f0de9a77a45f1541d0a7e05d0 306 SUPERFAMILY SSF46785 1 84 5.45E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1074 284c1565dbd8ef7f21d2b1e7ea78008e 169 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 22 154 5.7E-33 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Alide_1074 284c1565dbd8ef7f21d2b1e7ea78008e 169 SUPERFAMILY SSF52540 42 149 5.29E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1074 284c1565dbd8ef7f21d2b1e7ea78008e 169 Gene3D G3DSA:3.40.50.300 15 168 4.8E-38 T 12-10-2018 Alide_1074 284c1565dbd8ef7f21d2b1e7ea78008e 169 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 22 144 1.5E-33 T 12-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Alide_2219 d41871d91f5a26fb3fa51340aee5087d 348 Gene3D G3DSA:3.20.20.70 6 343 1.3E-132 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2219 d41871d91f5a26fb3fa51340aee5087d 348 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 5 344 48.331 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Alide_2219 d41871d91f5a26fb3fa51340aee5087d 348 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 300 320 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Alide_2219 d41871d91f5a26fb3fa51340aee5087d 348 SUPERFAMILY SSF51395 4 345 4.66E-101 T 12-10-2018 Alide_2219 d41871d91f5a26fb3fa51340aee5087d 348 Pfam PF01180 Dihydroorotate dehydrogenase 50 345 5.2E-87 T 12-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Alide_2219 d41871d91f5a26fb3fa51340aee5087d 348 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 83 102 - T 12-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Alide_2219 d41871d91f5a26fb3fa51340aee5087d 348 PIRSF PIRSF000164 16 348 1.0E-95 T 12-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Alide_2219 d41871d91f5a26fb3fa51340aee5087d 348 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 6 345 2.4E-120 T 12-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Alide_2131 7273af858856306bd243cecf3282f1da 442 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 73 367 1.1E-110 T 12-10-2018 IPR011970 Lytic murein transglycosylase Alide_2131 7273af858856306bd243cecf3282f1da 442 Gene3D G3DSA:1.10.530.10 115 362 2.9E-83 T 12-10-2018 Alide_2131 7273af858856306bd243cecf3282f1da 442 Pfam PF13406 Transglycosylase SLT domain 73 363 3.3E-109 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 Alide_2131 7273af858856306bd243cecf3282f1da 442 SUPERFAMILY SSF47090 373 440 2.51E-17 T 12-10-2018 IPR036365 PGBD-like superfamily Alide_2131 7273af858856306bd243cecf3282f1da 442 Pfam PF01471 Putative peptidoglycan binding domain 384 439 3.3E-14 T 12-10-2018 IPR002477 Peptidoglycan binding-like Alide_2131 7273af858856306bd243cecf3282f1da 442 Gene3D G3DSA:1.10.8.350 87 248 2.9E-83 T 12-10-2018 Alide_2131 7273af858856306bd243cecf3282f1da 442 Gene3D G3DSA:1.10.101.10 376 442 1.4E-13 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Alide_2131 7273af858856306bd243cecf3282f1da 442 SUPERFAMILY SSF53955 66 368 1.41E-98 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_1242 b5b11bbbd61d51aa8e10951a5559c07d 658 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 153 400 8.4E-59 T 12-10-2018 IPR008766 Replication gene A protein GO:0006260 Alide_1861 1b24f86b42eba68b7bcaaaefafea9e06 428 Gene3D G3DSA:1.10.150.20 177 236 6.6E-11 T 12-10-2018 Alide_1861 1b24f86b42eba68b7bcaaaefafea9e06 428 Pfam PF00817 impB/mucB/samB family 5 144 3.0E-33 T 12-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Alide_1861 1b24f86b42eba68b7bcaaaefafea9e06 428 SUPERFAMILY SSF56672 1 242 4.18E-63 T 12-10-2018 Alide_1861 1b24f86b42eba68b7bcaaaefafea9e06 428 Pfam PF13438 Domain of unknown function (DUF4113) 375 426 1.7E-18 T 12-10-2018 IPR025188 Domain of unknown function DUF4113 Alide_1861 1b24f86b42eba68b7bcaaaefafea9e06 428 Gene3D G3DSA:3.30.70.270 4 150 1.3E-38 T 12-10-2018 Alide_1861 1b24f86b42eba68b7bcaaaefafea9e06 428 Pfam PF11799 impB/mucB/samB family C-terminal domain 246 359 4.2E-11 T 12-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Alide_1861 1b24f86b42eba68b7bcaaaefafea9e06 428 Gene3D G3DSA:2.30.40.20 10 72 1.3E-38 T 12-10-2018 Alide_2917 7ccf8c11d663e3598934640007bb1ed4 495 SUPERFAMILY SSF53720 8 485 1.3E-168 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_2917 7ccf8c11d663e3598934640007bb1ed4 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_2917 7ccf8c11d663e3598934640007bb1ed4 495 Pfam PF00171 Aldehyde dehydrogenase family 20 481 1.9E-171 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_2917 7ccf8c11d663e3598934640007bb1ed4 495 Gene3D G3DSA:3.40.309.10 259 452 4.6E-177 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_2917 7ccf8c11d663e3598934640007bb1ed4 495 Gene3D G3DSA:3.40.605.10 16 479 4.6E-177 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_0166 80e24a142520f0038ec73aa533c102d7 264 SUPERFAMILY SSF52096 2 260 2.05E-75 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0166 80e24a142520f0038ec73aa533c102d7 264 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 102 122 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_0166 80e24a142520f0038ec73aa533c102d7 264 Gene3D G3DSA:1.10.12.10 205 264 8.2E-9 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_0166 80e24a142520f0038ec73aa533c102d7 264 Gene3D G3DSA:3.90.226.10 2 204 3.4E-65 T 12-10-2018 Alide_0166 80e24a142520f0038ec73aa533c102d7 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 259 7.0E-57 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3682 a8d112837dcce234798268c79e13a26b 286 Gene3D G3DSA:3.30.1150.10 120 278 6.9E-13 T 12-10-2018 Alide_3682 a8d112837dcce234798268c79e13a26b 286 SUPERFAMILY SSF74653 164 278 7.72E-17 T 12-10-2018 Alide_3682 a8d112837dcce234798268c79e13a26b 286 Pfam PF13103 TonB C terminal 183 255 8.7E-7 T 12-10-2018 Alide_3682 a8d112837dcce234798268c79e13a26b 286 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 202 276 9.6E-9 T 12-10-2018 IPR006260 TonB/TolA, C-terminal Alide_4289 e84c913d488c4242d4988ae07476d05c 327 PIRSF PIRSF017082 2 326 4.2E-66 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4289 e84c913d488c4242d4988ae07476d05c 327 Gene3D G3DSA:3.40.190.10 129 252 1.2E-95 T 12-10-2018 Alide_4289 e84c913d488c4242d4988ae07476d05c 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 323 5.1E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4289 e84c913d488c4242d4988ae07476d05c 327 Gene3D G3DSA:3.40.190.150 32 317 1.2E-95 T 12-10-2018 Alide_4289 e84c913d488c4242d4988ae07476d05c 327 SUPERFAMILY SSF53850 140 287 1.68E-8 T 12-10-2018 Alide_4427 db8fd81400a631b90f7c54379a0133d4 178 Pfam PF10502 Signal peptidase, peptidase S26 32 177 9.7E-44 T 12-10-2018 IPR019533 Peptidase S26 Alide_4427 db8fd81400a631b90f7c54379a0133d4 178 TIGRFAM TIGR02771 TraF_Ti: conjugative transfer signal peptidase TraF 14 178 4.2E-61 T 12-10-2018 IPR014139 Peptidase S26C, conjugative transfer signal peptidase TraF GO:0000746|GO:0042597 Alide_4427 db8fd81400a631b90f7c54379a0133d4 178 SUPERFAMILY SSF51306 22 176 5.75E-18 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_4427 db8fd81400a631b90f7c54379a0133d4 178 Gene3D G3DSA:2.10.109.10 73 177 5.3E-11 T 12-10-2018 Alide_3458 19dcf2192c6036da3929847e0d8262eb 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 326 5.7E-90 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3458 19dcf2192c6036da3929847e0d8262eb 329 SUPERFAMILY SSF53850 124 289 6.25E-14 T 12-10-2018 Alide_3458 19dcf2192c6036da3929847e0d8262eb 329 Gene3D G3DSA:3.40.190.150 34 319 3.6E-111 T 12-10-2018 Alide_3458 19dcf2192c6036da3929847e0d8262eb 329 Gene3D G3DSA:3.40.190.10 131 254 3.6E-111 T 12-10-2018 Alide_3458 19dcf2192c6036da3929847e0d8262eb 329 PIRSF PIRSF017082 3 329 4.7E-87 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1014 ec53cf0f18155b2c14aea54ca0825387 300 SMART SM00332 2 236 1.0E-9 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_1014 ec53cf0f18155b2c14aea54ca0825387 300 Gene3D G3DSA:3.60.40.10 1 240 6.1E-50 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_1014 ec53cf0f18155b2c14aea54ca0825387 300 SMART SM00331 3 238 1.4E-14 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_1014 ec53cf0f18155b2c14aea54ca0825387 300 SUPERFAMILY SSF81606 1 237 1.15E-50 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_1014 ec53cf0f18155b2c14aea54ca0825387 300 Pfam PF13672 Protein phosphatase 2C 9 211 8.9E-17 T 12-10-2018 Alide_3219 153b1f486b654a869fc277a55aa05faa 293 Gene3D G3DSA:3.40.190.10 90 281 1.8E-29 T 12-10-2018 Alide_3219 153b1f486b654a869fc277a55aa05faa 293 Gene3D G3DSA:3.40.190.10 160 258 1.8E-29 T 12-10-2018 Alide_3219 153b1f486b654a869fc277a55aa05faa 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 61 5.9E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3219 153b1f486b654a869fc277a55aa05faa 293 SUPERFAMILY SSF53850 86 287 8.01E-26 T 12-10-2018 Alide_3219 153b1f486b654a869fc277a55aa05faa 293 Pfam PF03466 LysR substrate binding domain 85 284 1.2E-29 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3219 153b1f486b654a869fc277a55aa05faa 293 SUPERFAMILY SSF46785 2 107 1.78E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3219 153b1f486b654a869fc277a55aa05faa 293 Gene3D G3DSA:1.10.10.10 2 87 7.2E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4160 edd440bcfad68dd49dbd9c6afe8655d6 460 Gene3D G3DSA:3.90.230.10 167 460 3.1E-92 T 12-10-2018 Alide_4160 edd440bcfad68dd49dbd9c6afe8655d6 460 Pfam PF00557 Metallopeptidase family M24 176 437 8.3E-62 T 12-10-2018 IPR000994 Peptidase M24 Alide_4160 edd440bcfad68dd49dbd9c6afe8655d6 460 SUPERFAMILY SSF55920 170 458 4.32E-80 T 12-10-2018 IPR036005 Creatinase/aminopeptidase-like Alide_4160 edd440bcfad68dd49dbd9c6afe8655d6 460 Pfam PF05195 Aminopeptidase P, N-terminal domain 5 121 1.5E-34 T 12-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 Alide_4160 edd440bcfad68dd49dbd9c6afe8655d6 460 SUPERFAMILY SSF53092 3 169 1.31E-49 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Alide_4160 edd440bcfad68dd49dbd9c6afe8655d6 460 SMART SM01011 1 131 5.2E-60 T 12-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 Alide_4160 edd440bcfad68dd49dbd9c6afe8655d6 460 Gene3D G3DSA:3.40.350.10 2 166 3.7E-47 T 12-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Alide_4385 d64710d9433a6a71e18cc402029ae729 487 Pfam PF07687 Peptidase dimerisation domain 215 382 1.8E-11 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_4385 d64710d9433a6a71e18cc402029ae729 487 Gene3D G3DSA:3.40.630.10 366 486 1.8E-20 T 12-10-2018 Alide_4385 d64710d9433a6a71e18cc402029ae729 487 Gene3D G3DSA:3.40.630.10 11 238 6.6E-53 T 12-10-2018 Alide_4385 d64710d9433a6a71e18cc402029ae729 487 SUPERFAMILY SSF53187 22 484 2.11E-47 T 12-10-2018 Alide_4385 d64710d9433a6a71e18cc402029ae729 487 Pfam PF01546 Peptidase family M20/M25/M40 103 483 6.2E-24 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_2146 5426f7fcbded254efc75d6d1cfea56b9 475 SUPERFAMILY SSF46785 2 76 1.03E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2146 5426f7fcbded254efc75d6d1cfea56b9 475 SMART SM00345 7 66 2.0E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2146 5426f7fcbded254efc75d6d1cfea56b9 475 SUPERFAMILY SSF53383 94 466 1.95E-89 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2146 5426f7fcbded254efc75d6d1cfea56b9 475 Gene3D G3DSA:3.40.640.10 141 359 1.1E-97 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2146 5426f7fcbded254efc75d6d1cfea56b9 475 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 5.3E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2146 5426f7fcbded254efc75d6d1cfea56b9 475 Gene3D G3DSA:1.10.10.10 1 68 4.7E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2146 5426f7fcbded254efc75d6d1cfea56b9 475 Pfam PF00155 Aminotransferase class I and II 147 459 1.3E-21 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_2146 5426f7fcbded254efc75d6d1cfea56b9 475 Gene3D G3DSA:3.90.1150.10 97 463 1.1E-97 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2122 d1198589ae400cac87faeaa3bebbe644 335 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 18 202 6.8E-44 T 12-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Alide_2122 d1198589ae400cac87faeaa3bebbe644 335 Gene3D G3DSA:3.40.50.620 7 228 3.1E-66 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2122 d1198589ae400cac87faeaa3bebbe644 335 SUPERFAMILY SSF52402 17 232 1.31E-52 T 12-10-2018 Alide_2122 d1198589ae400cac87faeaa3bebbe644 335 SUPERFAMILY SSF82829 235 315 1.15E-16 T 12-10-2018 Alide_2122 d1198589ae400cac87faeaa3bebbe644 335 Pfam PF01171 PP-loop family 19 198 1.4E-48 T 12-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Alide_2122 d1198589ae400cac87faeaa3bebbe644 335 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 9 306 21.793 T 12-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Alide_2122 d1198589ae400cac87faeaa3bebbe644 335 Gene3D G3DSA:1.20.59.20 229 313 8.9E-8 T 12-10-2018 Alide_2122 d1198589ae400cac87faeaa3bebbe644 335 Pfam PF09179 TilS substrate binding domain 246 311 4.4E-13 T 12-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Alide_2788 7ebe72c540baa71a3d042798245bf20e 329 Gene3D G3DSA:3.40.190.10 132 254 1.8E-104 T 12-10-2018 Alide_2788 7ebe72c540baa71a3d042798245bf20e 329 SUPERFAMILY SSF53850 94 283 1.38E-15 T 12-10-2018 Alide_2788 7ebe72c540baa71a3d042798245bf20e 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 325 4.5E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2788 7ebe72c540baa71a3d042798245bf20e 329 Gene3D G3DSA:3.40.190.150 34 319 1.8E-104 T 12-10-2018 Alide_2788 7ebe72c540baa71a3d042798245bf20e 329 PIRSF PIRSF017082 2 327 1.2E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0339 0b901741ea8b8d3ba36adec46c0c6cb7 345 SUPERFAMILY SSF89000 290 339 1.8E-15 T 12-10-2018 Alide_0339 0b901741ea8b8d3ba36adec46c0c6cb7 345 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 274 336 2.0E-29 T 12-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 Alide_0339 0b901741ea8b8d3ba36adec46c0c6cb7 345 Gene3D G3DSA:3.20.20.70 3 270 8.6E-83 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0339 0b901741ea8b8d3ba36adec46c0c6cb7 345 SUPERFAMILY SSF51569 4 276 9.52E-66 T 12-10-2018 Alide_0339 0b901741ea8b8d3ba36adec46c0c6cb7 345 Pfam PF07836 DmpG-like communication domain 276 336 2.0E-29 T 12-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 Alide_0339 0b901741ea8b8d3ba36adec46c0c6cb7 345 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 6 339 7.5E-167 T 12-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 Alide_0339 0b901741ea8b8d3ba36adec46c0c6cb7 345 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 344 211.844 T 12-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 Alide_0339 0b901741ea8b8d3ba36adec46c0c6cb7 345 Gene3D G3DSA:1.10.8.60 277 345 4.7E-30 T 12-10-2018 Alide_0339 0b901741ea8b8d3ba36adec46c0c6cb7 345 Pfam PF00682 HMGL-like 8 264 6.4E-56 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Alide_1619 22fd7bc4b40f7506673734d55eb9e3eb 163 Gene3D G3DSA:3.40.140.10 10 153 1.5E-39 T 12-10-2018 Alide_1619 22fd7bc4b40f7506673734d55eb9e3eb 163 SUPERFAMILY SSF53927 4 138 7.7E-38 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Alide_1619 22fd7bc4b40f7506673734d55eb9e3eb 163 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 60 97 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Alide_1619 22fd7bc4b40f7506673734d55eb9e3eb 163 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 11 108 4.5E-20 T 12-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 Gene3D G3DSA:3.40.47.10 9 280 7.7E-135 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 89 107 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 Pfam PF00108 Thiolase, N-terminal domain 8 266 3.9E-68 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 ProSitePatterns PS00099 Thiolases active site. 378 391 - T 12-10-2018 IPR020610 Thiolase, active site GO:0016747 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 SUPERFAMILY SSF53901 6 274 6.01E-69 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 Gene3D G3DSA:3.40.47.10 131 393 7.7E-135 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 395 6.9E-135 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 ProSitePatterns PS00737 Thiolases signature 2. 343 359 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 Pfam PF02803 Thiolase, C-terminal domain 276 396 2.3E-42 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 PIRSF PIRSF000429 1 397 2.5E-124 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_0678 6077057b1d305200b8ce8db79cd7ef29 397 SUPERFAMILY SSF53901 276 396 1.02E-40 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2409 49934a7270a8c55bcb7b92d485a5176d 326 Gene3D G3DSA:3.40.50.920 199 326 1.5E-44 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2409 49934a7270a8c55bcb7b92d485a5176d 326 SUPERFAMILY SSF52518 6 187 2.84E-68 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2409 49934a7270a8c55bcb7b92d485a5176d 326 Pfam PF02779 Transketolase, pyrimidine binding domain 7 181 5.5E-52 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_2409 49934a7270a8c55bcb7b92d485a5176d 326 Pfam PF02780 Transketolase, C-terminal domain 195 317 1.1E-39 T 12-10-2018 IPR033248 Transketolase, C-terminal domain Alide_2409 49934a7270a8c55bcb7b92d485a5176d 326 SUPERFAMILY SSF52922 193 325 1.44E-38 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2409 49934a7270a8c55bcb7b92d485a5176d 326 Gene3D G3DSA:3.40.50.970 3 198 3.0E-85 T 12-10-2018 Alide_2409 49934a7270a8c55bcb7b92d485a5176d 326 SMART SM00861 7 182 2.7E-67 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_4364 856280201cd1c35ccd0011494eea489f 505 Gene3D G3DSA:3.40.605.10 29 465 8.6E-156 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_4364 856280201cd1c35ccd0011494eea489f 505 Pfam PF00171 Aldehyde dehydrogenase family 23 484 1.6E-136 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_4364 856280201cd1c35ccd0011494eea489f 505 SUPERFAMILY SSF53720 6 489 6.54E-147 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_4364 856280201cd1c35ccd0011494eea489f 505 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 13 488 3.6E-197 T 12-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 Alide_4364 856280201cd1c35ccd0011494eea489f 505 Gene3D G3DSA:3.40.309.10 255 457 8.6E-156 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 12-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 5.4E-24 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.4E-14 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.4E-14 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.4E-14 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.4E-14 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 Gene3D G3DSA:1.20.5.1150 16 54 7.1E-19 T 12-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 Pfam PF01165 Ribosomal protein S21 3 57 5.1E-20 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 42 3.0E-8 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2424 0f9e771feb884cf6a445db75e03a64ee 70 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 20.093 T 12-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1226 c9daa8448fd263e69543b404c968852e 389 Pfam PF05940 NnrS protein 2 377 9.7E-66 T 12-10-2018 IPR010266 NnrS Alide_2970 610226a08fd7e2e6d85ad8e8aced60b1 656 Gene3D G3DSA:3.20.20.70 2 371 3.3E-98 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2970 610226a08fd7e2e6d85ad8e8aced60b1 656 SUPERFAMILY SSF51905 354 656 1.81E-25 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2970 610226a08fd7e2e6d85ad8e8aced60b1 656 Gene3D G3DSA:3.40.50.720 379 649 5.6E-72 T 12-10-2018 Alide_2970 610226a08fd7e2e6d85ad8e8aced60b1 656 SUPERFAMILY SSF51395 5 357 2.02E-83 T 12-10-2018 Alide_2970 610226a08fd7e2e6d85ad8e8aced60b1 656 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 379 616 2.1E-8 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_2970 610226a08fd7e2e6d85ad8e8aced60b1 656 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 379 404 2.3E-7 T 12-10-2018 Alide_2970 610226a08fd7e2e6d85ad8e8aced60b1 656 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 463 477 2.3E-7 T 12-10-2018 Alide_2970 610226a08fd7e2e6d85ad8e8aced60b1 656 Gene3D G3DSA:3.50.50.60 474 611 5.6E-72 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2970 610226a08fd7e2e6d85ad8e8aced60b1 656 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 330 1.8E-49 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Alide_0413 5c1ab70fb31d095762274c301b91ea79 104 Pfam PF00276 Ribosomal protein L23 13 98 1.0E-26 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Alide_0413 5c1ab70fb31d095762274c301b91ea79 104 Gene3D G3DSA:3.30.70.330 6 103 1.7E-31 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Alide_0413 5c1ab70fb31d095762274c301b91ea79 104 SUPERFAMILY SSF54189 8 96 1.04E-28 T 12-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0413 5c1ab70fb31d095762274c301b91ea79 104 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 12 102 21.346 T 12-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 151 163 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 SUPERFAMILY SSF47203 254 406 1.22E-45 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 SUPERFAMILY SSF56645 25 265 4.71E-53 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 149 242 4.6E-19 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 Gene3D G3DSA:2.40.110.10 148 264 2.2E-33 T 12-10-2018 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 256 404 5.0E-42 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 29 144 2.5E-10 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 Gene3D G3DSA:1.20.140.10 265 408 7.5E-44 T 12-10-2018 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 PIRSF PIRSF016578 23 106 11.0 T 12-10-2018 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 PIRSF PIRSF016578 156 409 8.9E-12 T 12-10-2018 Alide_2266 762dc0a2e852f8ec74d91421e2aaaddb 409 Gene3D G3DSA:1.10.540.10 16 146 5.4E-14 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2377 21971a1309d1f570f968bc234a230f68 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2377 21971a1309d1f570f968bc234a230f68 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2377 21971a1309d1f570f968bc234a230f68 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.5E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2377 21971a1309d1f570f968bc234a230f68 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.4E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2377 21971a1309d1f570f968bc234a230f68 304 SUPERFAMILY SSF53850 92 302 3.98E-46 T 12-10-2018 Alide_2377 21971a1309d1f570f968bc234a230f68 304 Gene3D G3DSA:1.10.10.10 3 90 9.8E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2377 21971a1309d1f570f968bc234a230f68 304 SUPERFAMILY SSF46785 4 114 1.01E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2377 21971a1309d1f570f968bc234a230f68 304 Pfam PF03466 LysR substrate binding domain 91 299 2.6E-47 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2377 21971a1309d1f570f968bc234a230f68 304 Gene3D G3DSA:3.40.190.290 95 302 2.3E-41 T 12-10-2018 Alide_0621 df90a2f7d228e3b23c4cc5a59718276e 168 SUPERFAMILY SSF54637 4 163 1.16E-50 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0621 df90a2f7d228e3b23c4cc5a59718276e 168 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 3 165 4.7E-82 T 12-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Alide_0621 df90a2f7d228e3b23c4cc5a59718276e 168 Pfam PF07977 FabA-like domain 26 155 5.7E-49 T 12-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Alide_0621 df90a2f7d228e3b23c4cc5a59718276e 168 Gene3D G3DSA:3.10.129.10 2 167 1.8E-61 T 12-10-2018 Alide_3804 104eb42d937abc4958f109be307f1a64 537 SUPERFAMILY SSF54373 296 478 1.18E-44 T 12-10-2018 Alide_3804 104eb42d937abc4958f109be307f1a64 537 Pfam PF00732 GMC oxidoreductase 7 300 2.0E-77 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_3804 104eb42d937abc4958f109be307f1a64 537 Pfam PF05199 GMC oxidoreductase 392 530 1.6E-39 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Alide_3804 104eb42d937abc4958f109be307f1a64 537 Gene3D G3DSA:4.10.450.10 40 199 1.1E-167 T 12-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 Alide_3804 104eb42d937abc4958f109be307f1a64 537 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 84 107 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_3804 104eb42d937abc4958f109be307f1a64 537 SUPERFAMILY SSF51905 5 535 2.07E-83 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3804 104eb42d937abc4958f109be307f1a64 537 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 259 273 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_3804 104eb42d937abc4958f109be307f1a64 537 Gene3D G3DSA:3.50.50.60 7 534 1.1E-167 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3804 104eb42d937abc4958f109be307f1a64 537 Gene3D G3DSA:1.10.1220.110 99 153 1.1E-167 T 12-10-2018 Alide_3804 104eb42d937abc4958f109be307f1a64 537 PIRSF PIRSF000137 1 537 1.6E-138 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_3804 104eb42d937abc4958f109be307f1a64 537 Gene3D G3DSA:3.30.410.40 154 475 1.1E-167 T 12-10-2018 Alide_3696 9db7cd15a65fbe61bbab374a45a7a641 572 Pfam PF00501 AMP-binding enzyme 28 466 2.1E-61 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_3696 9db7cd15a65fbe61bbab374a45a7a641 572 Gene3D G3DSA:3.30.300.30 462 572 4.3E-20 T 12-10-2018 Alide_3696 9db7cd15a65fbe61bbab374a45a7a641 572 SUPERFAMILY SSF56801 25 565 6.93E-100 T 12-10-2018 Alide_3696 9db7cd15a65fbe61bbab374a45a7a641 572 Gene3D G3DSA:3.40.50.12780 176 459 5.0E-47 T 12-10-2018 Alide_3696 9db7cd15a65fbe61bbab374a45a7a641 572 Pfam PF13193 AMP-binding enzyme C-terminal domain 475 545 8.7E-8 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_3696 9db7cd15a65fbe61bbab374a45a7a641 572 Gene3D G3DSA:3.40.50.980 17 133 7.5E-23 T 12-10-2018 Alide_3739 a28167869613477b613ee40629af867d 585 Gene3D G3DSA:3.30.70.2700 1 90 1.7E-13 T 12-10-2018 Alide_3739 a28167869613477b613ee40629af867d 585 Gene3D G3DSA:3.50.50.60 506 570 2.1E-13 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3739 a28167869613477b613ee40629af867d 585 Gene3D G3DSA:3.50.50.60 97 323 1.2E-77 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3739 a28167869613477b613ee40629af867d 585 PIRSF PIRSF038984 7 571 3.1E-220 T 12-10-2018 IPR028348 FAD dependent protein Alide_3739 a28167869613477b613ee40629af867d 585 SUPERFAMILY SSF51905 110 570 5.01E-30 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1541 b7534eed686cf5db139b8d684b977c67 131 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 4 121 17.53 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Alide_1541 b7534eed686cf5db139b8d684b977c67 131 TIGRFAM TIGR00494 crcB: protein CrcB 5 116 4.9E-27 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Alide_1541 b7534eed686cf5db139b8d684b977c67 131 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 116 2.5E-23 T 12-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Alide_0354 8c7ccb1d4f26c55ff73ed2aee533df24 327 Gene3D G3DSA:3.40.190.10 129 252 1.4E-105 T 12-10-2018 Alide_0354 8c7ccb1d4f26c55ff73ed2aee533df24 327 SUPERFAMILY SSF53850 118 287 1.5E-11 T 12-10-2018 Alide_0354 8c7ccb1d4f26c55ff73ed2aee533df24 327 PIRSF PIRSF017082 2 327 1.6E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0354 8c7ccb1d4f26c55ff73ed2aee533df24 327 Gene3D G3DSA:3.40.190.150 32 317 1.4E-105 T 12-10-2018 Alide_0354 8c7ccb1d4f26c55ff73ed2aee533df24 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 322 3.6E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2019 7076e8e148bfafe58576e671afc5dccd 282 SUPERFAMILY SSF55120 33 252 1.76E-51 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_2019 7076e8e148bfafe58576e671afc5dccd 282 Gene3D G3DSA:3.30.2350.10 26 250 5.1E-52 T 12-10-2018 Alide_2019 7076e8e148bfafe58576e671afc5dccd 282 Pfam PF00849 RNA pseudouridylate synthase 43 197 1.5E-25 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_2019 7076e8e148bfafe58576e671afc5dccd 282 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 83 97 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_1624 03398b6a9068d343e5a8c702ad00eb0f 119 Gene3D G3DSA:2.40.10.220 4 119 2.6E-43 T 12-10-2018 Alide_1624 03398b6a9068d343e5a8c702ad00eb0f 119 Pfam PF07238 PilZ domain 15 97 2.1E-6 T 12-10-2018 IPR009875 PilZ domain GO:0035438 Alide_0204 daf026212a6c3046bd713748270f26bf 911 TIGRFAM TIGR02082 metH: methionine synthase 5 880 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 SUPERFAMILY SSF52242 426 577 3.27E-40 T 12-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Alide_0204 daf026212a6c3046bd713748270f26bf 911 SUPERFAMILY SSF47644 329 415 1.7E-25 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 Gene3D G3DSA:1.10.288.10 619 781 3.7E-132 T 12-10-2018 Alide_0204 daf026212a6c3046bd713748270f26bf 911 SUPERFAMILY SSF56507 588 910 7.32E-122 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 Pfam PF02310 B12 binding domain 431 523 1.9E-17 T 12-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Alide_0204 daf026212a6c3046bd713748270f26bf 911 Pfam PF00809 Pterin binding enzyme 29 267 2.7E-61 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 SMART SM01018 328 416 3.6E-42 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 Gene3D G3DSA:1.10.1240.10 317 413 6.5E-35 T 12-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 PIRSF PIRSF000381 2 883 0.0 T 12-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 620 896 2.7E-120 T 12-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 Gene3D G3DSA:3.40.50.280 427 581 1.9E-51 T 12-10-2018 Alide_0204 daf026212a6c3046bd713748270f26bf 911 SUPERFAMILY SSF51717 25 299 1.83E-93 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 Pfam PF02607 B12 binding domain 332 408 5.0E-25 T 12-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 Gene3D G3DSA:3.10.196.10 593 911 3.7E-132 T 12-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0204 daf026212a6c3046bd713748270f26bf 911 Gene3D G3DSA:3.20.20.20 9 311 2.5E-130 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_0197 989688b279b59192bbd16d69e31e87b6 425 Pfam PF02515 CoA-transferase family III 15 401 3.2E-125 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0197 989688b279b59192bbd16d69e31e87b6 425 SUPERFAMILY SSF89796 11 425 3.27E-136 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0197 989688b279b59192bbd16d69e31e87b6 425 Gene3D G3DSA:3.40.50.10540 15 419 6.6E-142 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0197 989688b279b59192bbd16d69e31e87b6 425 Gene3D G3DSA:3.30.1540.10 253 343 6.6E-142 T 12-10-2018 Alide_1526 a2076031d109d91f66ea7c81b6011d0f 414 SMART SM01126 212 352 1.2E-16 T 12-10-2018 IPR024445 ISXO2-like transposase domain Alide_1526 a2076031d109d91f66ea7c81b6011d0f 414 Pfam PF12762 ISXO2-like transposase domain 220 352 1.6E-25 T 12-10-2018 IPR024445 ISXO2-like transposase domain Alide_1526 a2076031d109d91f66ea7c81b6011d0f 414 Pfam PF12760 Transposase zinc-ribbon domain 55 93 2.7E-6 T 12-10-2018 IPR024442 Transposase, zinc-ribbon Alide_3440 ddf26e0ec6360a09bec5a1cb9b273ee6 254 Pfam PF00899 ThiF family 9 243 3.5E-63 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Alide_3440 ddf26e0ec6360a09bec5a1cb9b273ee6 254 SUPERFAMILY SSF69572 2 248 4.05E-87 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 Alide_3440 ddf26e0ec6360a09bec5a1cb9b273ee6 254 Gene3D G3DSA:3.40.50.720 1 253 3.6E-93 T 12-10-2018 Alide_4299 3b1634349f3d187faed84e8758172f8a 313 SUPERFAMILY SSF53850 95 297 6.15E-43 T 12-10-2018 Alide_4299 3b1634349f3d187faed84e8758172f8a 313 Gene3D G3DSA:1.10.10.10 3 84 7.1E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4299 3b1634349f3d187faed84e8758172f8a 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.0E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4299 3b1634349f3d187faed84e8758172f8a 313 Pfam PF03466 LysR substrate binding domain 93 294 1.4E-44 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4299 3b1634349f3d187faed84e8758172f8a 313 Gene3D G3DSA:3.40.190.290 95 299 2.8E-49 T 12-10-2018 Alide_4299 3b1634349f3d187faed84e8758172f8a 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.8E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4299 3b1634349f3d187faed84e8758172f8a 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.8E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4299 3b1634349f3d187faed84e8758172f8a 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.8E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4299 3b1634349f3d187faed84e8758172f8a 313 SUPERFAMILY SSF46785 4 115 3.66E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1922 eb4fb2e5bbc18986686aefcbe10fd511 241 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 132 206 5.2E-8 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1922 eb4fb2e5bbc18986686aefcbe10fd511 241 Gene3D G3DSA:1.20.120.1600 31 115 3.0E-57 T 12-10-2018 Alide_1922 eb4fb2e5bbc18986686aefcbe10fd511 241 Pfam PF13419 Haloacid dehalogenase-like hydrolase 144 211 3.0E-8 T 12-10-2018 Alide_1922 eb4fb2e5bbc18986686aefcbe10fd511 241 SUPERFAMILY SSF56784 17 240 7.37E-40 T 12-10-2018 IPR036412 HAD-like superfamily Alide_1922 eb4fb2e5bbc18986686aefcbe10fd511 241 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 171 4.6E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1922 eb4fb2e5bbc18986686aefcbe10fd511 241 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 201 214 4.6E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1922 eb4fb2e5bbc18986686aefcbe10fd511 241 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 17 28 4.6E-5 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_1922 eb4fb2e5bbc18986686aefcbe10fd511 241 Gene3D G3DSA:3.40.50.1000 18 233 3.0E-57 T 12-10-2018 IPR023214 HAD superfamily Alide_3902 549e542dbbe1e61029d6ec3c403dfeea 167 Pfam PF07987 Domain of unkown function (DUF1775) 23 153 5.6E-23 T 12-10-2018 IPR012533 YcnI-like Alide_3902 549e542dbbe1e61029d6ec3c403dfeea 167 Gene3D G3DSA:2.60.40.2230 20 167 4.5E-24 T 12-10-2018 IPR038507 YcnI-like superfamily Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 383 4.8E-39 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 343 362 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 Gene3D G3DSA:2.40.110.10 124 241 3.2E-41 T 12-10-2018 Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 SUPERFAMILY SSF47203 234 384 3.7E-42 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 127 139 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 224 4.5E-25 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 Gene3D G3DSA:1.10.540.10 1 123 2.4E-37 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 SUPERFAMILY SSF56645 7 248 3.4E-82 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 121 1.7E-34 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0138 9de06a28fc841d872d4c7d9e63f3bd43 384 Gene3D G3DSA:1.20.140.10 242 384 6.8E-40 T 12-10-2018 Alide_3142 6cf048a0072d0a63599c9c84480ff285 356 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 2 350 3.7E-151 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Alide_3142 6cf048a0072d0a63599c9c84480ff285 356 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 1 355 51.122 T 12-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Alide_3142 6cf048a0072d0a63599c9c84480ff285 356 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 242 261 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Alide_3142 6cf048a0072d0a63599c9c84480ff285 356 Gene3D G3DSA:3.40.718.10 1 355 1.3E-158 T 12-10-2018 Alide_3142 6cf048a0072d0a63599c9c84480ff285 356 SMART SM01329 2 351 9.0E-209 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_3142 6cf048a0072d0a63599c9c84480ff285 356 SUPERFAMILY SSF53659 1 355 1.06E-123 T 12-10-2018 Alide_3142 6cf048a0072d0a63599c9c84480ff285 356 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 2 351 9.3E-134 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_1101 5fd5de5ed39e7c900255b5a913a0c073 362 Gene3D G3DSA:3.30.310.170 246 362 5.1E-15 T 12-10-2018 Alide_1101 5fd5de5ed39e7c900255b5a913a0c073 362 Pfam PF06804 NlpB/DapX lipoprotein 28 359 1.8E-55 T 12-10-2018 IPR010653 NlpB/DapX lipoprotein Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.833 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 SUPERFAMILY SSF46906 68 141 3.53E-24 T 12-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 5.5E-28 T 12-10-2018 IPR020784 Ribosomal protein L11, N-terminal Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 2.0E-21 T 12-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 SMART SM00649 9 141 1.6E-80 T 12-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 Gene3D G3DSA:3.30.1550.10 2 72 3.2E-34 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 3.0E-16 T 12-10-2018 Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 12-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 Gene3D G3DSA:1.10.10.250 73 141 2.2E-25 T 12-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.0E-62 T 12-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0458 4eb4c589f61d389c45a68249c25d22be 143 SUPERFAMILY SSF54747 3 73 7.85E-30 T 12-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Alide_2943 77873ba9f3f9b93f5245f7dc8de83fcb 478 Pfam PF03972 MmgE/PrpD family 27 441 1.5E-77 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_2943 77873ba9f3f9b93f5245f7dc8de83fcb 478 Gene3D G3DSA:1.10.4100.10 47 441 1.7E-79 T 12-10-2018 Alide_2943 77873ba9f3f9b93f5245f7dc8de83fcb 478 SUPERFAMILY SSF103378 25 450 1.83E-76 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_2943 77873ba9f3f9b93f5245f7dc8de83fcb 478 Gene3D G3DSA:3.30.1330.120 295 427 1.7E-79 T 12-10-2018 Alide_0151 71d887cc8f1a662cea0de393a840305e 513 Gene3D G3DSA:3.30.300.310 403 507 1.7E-27 T 12-10-2018 Alide_0151 71d887cc8f1a662cea0de393a840305e 513 SUPERFAMILY SSF56801 4 507 7.2E-119 T 12-10-2018 Alide_0151 71d887cc8f1a662cea0de393a840305e 513 Pfam PF00501 AMP-binding enzyme 4 407 4.2E-70 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0151 71d887cc8f1a662cea0de393a840305e 513 Pfam PF13193 AMP-binding enzyme C-terminal domain 416 494 3.4E-20 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_0151 71d887cc8f1a662cea0de393a840305e 513 Gene3D G3DSA:3.40.50.12780 1 399 2.1E-87 T 12-10-2018 Alide_3073 845762873e03336b7ba6ffc00b2b13e4 281 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 259 3.4E-80 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Alide_3073 845762873e03336b7ba6ffc00b2b13e4 281 PIRSF PIRSF000903 1 279 4.4E-99 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Alide_3073 845762873e03336b7ba6ffc00b2b13e4 281 Gene3D G3DSA:3.60.21.10 1 278 3.2E-72 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like Alide_3073 845762873e03336b7ba6ffc00b2b13e4 281 Pfam PF00149 Calcineurin-like phosphoesterase 3 129 3.7E-12 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Alide_3073 845762873e03336b7ba6ffc00b2b13e4 281 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 272 44.234 T 12-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 Alide_3073 845762873e03336b7ba6ffc00b2b13e4 281 SUPERFAMILY SSF56300 1 256 3.14E-50 T 12-10-2018 Alide_2175 ca1e78b2c2ea584c99236eb21acb7e2d 377 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 28 44 1.7E-6 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2175 ca1e78b2c2ea584c99236eb21acb7e2d 377 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 50 66 1.7E-6 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2175 ca1e78b2c2ea584c99236eb21acb7e2d 377 Pfam PF13458 Periplasmic binding protein 28 372 1.8E-58 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_2175 ca1e78b2c2ea584c99236eb21acb7e2d 377 Gene3D G3DSA:3.40.50.2300 29 349 1.0E-96 T 12-10-2018 Alide_2175 ca1e78b2c2ea584c99236eb21acb7e2d 377 Gene3D G3DSA:3.40.50.2300 149 281 1.0E-96 T 12-10-2018 Alide_2175 ca1e78b2c2ea584c99236eb21acb7e2d 377 SUPERFAMILY SSF53822 28 373 3.3E-92 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_3250 6c76dcb7c4db84cd805803eedbf0bbba 249 Pfam PF13681 Type IV pilus assembly protein PilX C-term 119 243 1.8E-18 T 12-10-2018 IPR025205 PilX/PilW C-terminal domain Alide_3250 6c76dcb7c4db84cd805803eedbf0bbba 249 Pfam PF14341 PilX N-terminal 15 62 4.0E-7 T 12-10-2018 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 SUPERFAMILY SSF51735 4 231 2.04E-58 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.6E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.6E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.6E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 Gene3D G3DSA:3.40.50.720 6 251 4.7E-66 T 12-10-2018 Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.1E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.1E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.1E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.1E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.1E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 Pfam PF00106 short chain dehydrogenase 6 199 2.7E-49 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1934 32697bb1fd61893d08de3767b4b3868d 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_1786 20538d75399c30ebf23915889edda4a8 282 Gene3D G3DSA:3.40.1190.20 1 279 3.2E-106 T 12-10-2018 IPR029056 Ribokinase-like Alide_1786 20538d75399c30ebf23915889edda4a8 282 SUPERFAMILY SSF53613 12 272 4.99E-80 T 12-10-2018 IPR029056 Ribokinase-like Alide_1786 20538d75399c30ebf23915889edda4a8 282 Pfam PF08543 Phosphomethylpyrimidine kinase 22 269 1.3E-93 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Alide_1786 20538d75399c30ebf23915889edda4a8 282 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 15 270 4.7E-94 T 12-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Alide_4029 18a3301ef84f57ab96cd8fb4f7149047 164 Gene3D G3DSA:3.40.140.10 42 164 4.4E-38 T 12-10-2018 Alide_4029 18a3301ef84f57ab96cd8fb4f7149047 164 Pfam PF04002 RadC-like JAB domain 44 162 4.2E-39 T 12-10-2018 IPR025657 RadC-like JAB domain Alide_4029 18a3301ef84f57ab96cd8fb4f7149047 164 SUPERFAMILY SSF102712 60 141 1.83E-5 T 12-10-2018 Alide_1979 5601b7f4c6f7c5291232f4a066f56605 215 Gene3D G3DSA:3.90.550.10 4 208 1.3E-51 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_1979 5601b7f4c6f7c5291232f4a066f56605 215 SUPERFAMILY SSF53448 8 202 1.91E-33 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_1979 5601b7f4c6f7c5291232f4a066f56605 215 Pfam PF12804 MobA-like NTP transferase domain 10 181 3.8E-35 T 12-10-2018 IPR025877 MobA-like NTP transferase Alide_1087 e2f86e76bd9737850c9eb06492134b88 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 114 5.1E-19 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_1087 e2f86e76bd9737850c9eb06492134b88 229 Gene3D G3DSA:1.10.3720.10 1 222 1.8E-45 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1087 e2f86e76bd9737850c9eb06492134b88 229 SUPERFAMILY SSF161098 8 205 1.23E-36 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1087 e2f86e76bd9737850c9eb06492134b88 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 219 7.2E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_2293 36e061787386b8a83f887af1a8643763 335 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 328 5.0E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2293 36e061787386b8a83f887af1a8643763 335 PIRSF PIRSF017082 4 331 2.4E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2293 36e061787386b8a83f887af1a8643763 335 SUPERFAMILY SSF53850 121 281 2.06E-11 T 12-10-2018 Alide_2293 36e061787386b8a83f887af1a8643763 335 Gene3D G3DSA:3.40.190.150 37 322 6.6E-103 T 12-10-2018 Alide_2293 36e061787386b8a83f887af1a8643763 335 Gene3D G3DSA:3.40.190.10 134 257 6.6E-103 T 12-10-2018 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 ProSitePatterns PS00632 Ribosomal protein S4 signature. 112 136 - T 12-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 Pfam PF01479 S4 domain 115 161 1.5E-19 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 20 224 6.3E-82 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 18 224 34.989 T 12-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 SMART SM01390 20 113 7.1E-47 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 Gene3D G3DSA:1.10.1050.10 23 224 4.1E-79 T 12-10-2018 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 20 113 1.4E-30 T 12-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 Gene3D G3DSA:3.10.290.10 113 209 4.1E-79 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 SMART SM00363 114 178 6.8E-19 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3959 c0c5a03faa135919129eed50e89c627c 224 SUPERFAMILY SSF55174 19 224 1.31E-68 T 12-10-2018 Alide_1847 8197b0c58efc85bcfbbdbed668acffd1 349 SUPERFAMILY SSF55073 187 344 8.63E-47 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_1847 8197b0c58efc85bcfbbdbed668acffd1 349 Gene3D G3DSA:3.30.70.270 177 346 1.3E-53 T 12-10-2018 Alide_1847 8197b0c58efc85bcfbbdbed668acffd1 349 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 179 342 3.6E-47 T 12-10-2018 IPR000160 GGDEF domain Alide_1847 8197b0c58efc85bcfbbdbed668acffd1 349 Pfam PF00990 Diguanylate cyclase, GGDEF domain 181 339 7.8E-44 T 12-10-2018 IPR000160 GGDEF domain Alide_1847 8197b0c58efc85bcfbbdbed668acffd1 349 SMART SM00267 170 343 1.0E-57 T 12-10-2018 IPR000160 GGDEF domain Alide_1090 b71c0f9be002f06080787c6f574903e4 95 Pfam PF04977 Septum formation initiator 14 91 5.7E-22 T 12-10-2018 IPR007060 Septum formation initiator FtsL/DivIC Alide_1090 b71c0f9be002f06080787c6f574903e4 95 Hamap MF_00599 Cell division protein FtsB [ftsB]. 4 92 26.052 T 12-10-2018 IPR023081 Cell division protein FtsB Alide_3340 ab793c5e9b1f5f5c625e3f701da3408d 618 Gene3D G3DSA:3.50.30.80 426 578 1.0E-55 T 12-10-2018 Alide_3340 ab793c5e9b1f5f5c625e3f701da3408d 618 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3340 ab793c5e9b1f5f5c625e3f701da3408d 618 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 514 525 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3340 ab793c5e9b1f5f5c625e3f701da3408d 618 SUPERFAMILY SSF143975 4 425 2.62E-137 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3340 ab793c5e9b1f5f5c625e3f701da3408d 618 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 613 1.9E-257 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3340 ab793c5e9b1f5f5c625e3f701da3408d 618 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 613 45.129 T 12-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3340 ab793c5e9b1f5f5c625e3f701da3408d 618 Pfam PF00920 Dehydratase family 34 610 3.1E-223 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_3340 ab793c5e9b1f5f5c625e3f701da3408d 618 SUPERFAMILY SSF52016 426 614 2.82E-62 T 12-10-2018 Alide_3372 0569784e4cb68fbb2329173d389d6314 252 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 71 1.4E-18 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3372 0569784e4cb68fbb2329173d389d6314 252 SMART SM00345 14 73 1.0E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3372 0569784e4cb68fbb2329173d389d6314 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 8.7E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3372 0569784e4cb68fbb2329173d389d6314 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 8.7E-10 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3372 0569784e4cb68fbb2329173d389d6314 252 SMART SM00866 95 234 1.7E-31 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_3372 0569784e4cb68fbb2329173d389d6314 252 SUPERFAMILY SSF64288 61 241 2.98E-38 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_3372 0569784e4cb68fbb2329173d389d6314 252 Gene3D G3DSA:1.10.10.10 4 82 4.7E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3372 0569784e4cb68fbb2329173d389d6314 252 Gene3D G3DSA:3.40.1410.10 87 246 1.0E-37 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_3372 0569784e4cb68fbb2329173d389d6314 252 Pfam PF07702 UTRA domain 97 234 1.1E-32 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_3372 0569784e4cb68fbb2329173d389d6314 252 SUPERFAMILY SSF46785 2 78 2.35E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4406 f613fe40a7ef60f4fd076c1a447c3973 301 SUPERFAMILY SSF46785 1 80 8.71E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4406 f613fe40a7ef60f4fd076c1a447c3973 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.3E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4406 f613fe40a7ef60f4fd076c1a447c3973 301 SUPERFAMILY SSF53850 90 295 6.02E-32 T 12-10-2018 Alide_4406 f613fe40a7ef60f4fd076c1a447c3973 301 Gene3D G3DSA:3.40.190.290 92 299 3.8E-31 T 12-10-2018 Alide_4406 f613fe40a7ef60f4fd076c1a447c3973 301 Gene3D G3DSA:1.10.10.10 1 91 1.5E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4406 f613fe40a7ef60f4fd076c1a447c3973 301 Pfam PF03466 LysR substrate binding domain 90 293 9.6E-33 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1799 ca29ac70043c4d71bdfbbe3cfdf74ce5 90 Gene3D G3DSA:1.10.3880.10 1 90 7.6E-42 T 12-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 Alide_1799 ca29ac70043c4d71bdfbbe3cfdf74ce5 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 29.341 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Alide_1799 ca29ac70043c4d71bdfbbe3cfdf74ce5 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 75 4.0E-38 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Alide_1799 ca29ac70043c4d71bdfbbe3cfdf74ce5 90 PIRSF PIRSF029827 1 90 2.1E-41 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Alide_1799 ca29ac70043c4d71bdfbbe3cfdf74ce5 90 SUPERFAMILY SSF111148 1 89 1.96E-40 T 12-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 Alide_1799 ca29ac70043c4d71bdfbbe3cfdf74ce5 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 3.3E-44 T 12-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 Alide_3808 37b8e7cfe4599d69d8ec9f3a2f4f089d 240 Gene3D G3DSA:3.40.50.300 1 240 2.0E-62 T 12-10-2018 Alide_3808 37b8e7cfe4599d69d8ec9f3a2f4f089d 240 SUPERFAMILY SSF52540 5 237 1.74E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3808 37b8e7cfe4599d69d8ec9f3a2f4f089d 240 PIRSF PIRSF039137 1 240 1.3E-104 T 12-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Alide_3808 37b8e7cfe4599d69d8ec9f3a2f4f089d 240 Pfam PF00005 ABC transporter 21 167 4.4E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3808 37b8e7cfe4599d69d8ec9f3a2f4f089d 240 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3808 37b8e7cfe4599d69d8ec9f3a2f4f089d 240 SMART SM00382 30 218 1.5E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4072 24905a91ce45fae33c04d55d635d5367 544 Gene3D G3DSA:1.10.287.950 214 516 7.9E-76 T 12-10-2018 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 Pfam PF00672 HAMP domain 215 262 4.6E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 Pfam PF02203 Tar ligand binding domain homologue 2 176 1.2E-34 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 SUPERFAMILY SSF58104 234 515 2.09E-64 T 12-10-2018 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 SMART SM00283 267 514 3.6E-75 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 SMART SM00304 214 266 3.5E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 3.9E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 3.9E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 3.9E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 3.9E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 3.9E-49 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4072 24905a91ce45fae33c04d55d635d5367 544 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 480 8.6E-47 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_0662 670ef6eb173c37b026148e57a828bf91 293 SUPERFAMILY SSF54534 142 242 1.33E-6 T 12-10-2018 Alide_0662 670ef6eb173c37b026148e57a828bf91 293 Gene3D G3DSA:3.10.50.40 140 244 5.0E-5 T 12-10-2018 Alide_0662 670ef6eb173c37b026148e57a828bf91 293 Pfam PF13145 PPIC-type PPIASE domain 121 249 3.4E-9 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Alide_2393 77a15017de2048660aca6cae84326d48 930 Gene3D G3DSA:2.20.25.90 2 55 3.3E-17 T 12-10-2018 Alide_2393 77a15017de2048660aca6cae84326d48 930 PIRSF PIRSF036643 1 746 1.4E-146 T 12-10-2018 Alide_2393 77a15017de2048660aca6cae84326d48 930 Gene3D G3DSA:3.40.228.10 143 351 2.7E-181 T 12-10-2018 Alide_2393 77a15017de2048660aca6cae84326d48 930 Pfam PF00384 Molybdopterin oxidoreductase 63 498 1.2E-75 T 12-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_2393 77a15017de2048660aca6cae84326d48 930 SUPERFAMILY SSF53706 3 599 2.09E-186 T 12-10-2018 Alide_2393 77a15017de2048660aca6cae84326d48 930 Gene3D G3DSA:3.40.50.740 73 554 2.7E-181 T 12-10-2018 Alide_2393 77a15017de2048660aca6cae84326d48 930 Pfam PF04324 BFD-like [2Fe-2S] binding domain 874 926 1.5E-7 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Alide_2393 77a15017de2048660aca6cae84326d48 930 SMART SM00926 2 56 2.5E-20 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_2393 77a15017de2048660aca6cae84326d48 930 Gene3D G3DSA:1.10.10.1100 874 930 1.1E-6 T 12-10-2018 Alide_2393 77a15017de2048660aca6cae84326d48 930 SUPERFAMILY SSF50692 551 723 1.51E-40 T 12-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Alide_2393 77a15017de2048660aca6cae84326d48 930 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 4 51 3.6E-19 T 12-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_2393 77a15017de2048660aca6cae84326d48 930 Gene3D G3DSA:2.40.40.20 588 723 1.5E-35 T 12-10-2018 Alide_2393 77a15017de2048660aca6cae84326d48 930 Pfam PF01568 Molydopterin dinucleotide binding domain 598 716 8.7E-27 T 12-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 Alide_3669 fa836daddef910e177f9b83b3c9c72c2 191 Gene3D G3DSA:3.40.30.10 60 191 6.6E-32 T 12-10-2018 Alide_3669 fa836daddef910e177f9b83b3c9c72c2 191 SUPERFAMILY SSF52833 22 187 1.02E-30 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3669 fa836daddef910e177f9b83b3c9c72c2 191 ProSitePatterns PS00194 Thioredoxin family active site. 82 100 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Alide_3669 fa836daddef910e177f9b83b3c9c72c2 191 Pfam PF08534 Redoxin 60 180 8.0E-20 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 SUPERFAMILY SSF51735 5 140 6.75E-34 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 Gene3D G3DSA:3.40.50.261 134 297 7.8E-39 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 Pfam PF13380 CoA binding domain 12 135 1.5E-21 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 SUPERFAMILY SSF52210 135 297 7.98E-37 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 Gene3D G3DSA:3.30.470.20 479 690 2.6E-58 T 12-10-2018 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 Pfam PF13549 ATP-grasp domain 475 692 2.2E-51 T 12-10-2018 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 Gene3D G3DSA:3.30.1490.20 498 573 2.6E-58 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 Gene3D G3DSA:3.40.50.720 5 132 5.9E-39 T 12-10-2018 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 Gene3D G3DSA:3.40.50.261 301 457 7.7E-27 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 SMART SM00881 8 103 1.6E-32 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 159 295 3.1E-38 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 SUPERFAMILY SSF52210 302 453 2.62E-25 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4194 7ea59fa0f6ee3d7bf17ccc840a1d2006 695 SUPERFAMILY SSF56059 480 692 7.86E-31 T 12-10-2018 Alide_4506 3993d736479aa99f6ebdf27ab837f034 280 Pfam PF12833 Helix-turn-helix domain 192 269 5.3E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_4506 3993d736479aa99f6ebdf27ab837f034 280 SUPERFAMILY SSF46689 169 219 5.18E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4506 3993d736479aa99f6ebdf27ab837f034 280 Pfam PF12852 Cupin 3 155 2.3E-26 T 12-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain Alide_4506 3993d736479aa99f6ebdf27ab837f034 280 SMART SM00342 186 268 5.7E-25 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_4506 3993d736479aa99f6ebdf27ab837f034 280 SUPERFAMILY SSF46689 222 270 6.72E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4506 3993d736479aa99f6ebdf27ab837f034 280 Gene3D G3DSA:1.10.10.60 166 273 5.4E-23 T 12-10-2018 Alide_0284 ef7f56e52130ddcd545a5a0a55b32232 370 SUPERFAMILY SSF56176 7 174 4.67E-36 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_0284 ef7f56e52130ddcd545a5a0a55b32232 370 Gene3D G3DSA:1.10.45.10 335 369 1.6E-6 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Alide_0284 ef7f56e52130ddcd545a5a0a55b32232 370 Pfam PF01565 FAD binding domain 7 136 2.1E-20 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Alide_0284 ef7f56e52130ddcd545a5a0a55b32232 370 Gene3D G3DSA:3.30.465.10 54 173 8.6E-37 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Alide_0284 ef7f56e52130ddcd545a5a0a55b32232 370 SUPERFAMILY SSF55103 137 369 8.11E-17 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Alide_0905 affbafb66cd3ef9e30d68f9df57ba6da 251 Gene3D G3DSA:1.10.760.10 24 216 1.8E-19 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0905 affbafb66cd3ef9e30d68f9df57ba6da 251 Pfam PF02167 Cytochrome C1 family 30 249 1.2E-19 T 12-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 Alide_0905 affbafb66cd3ef9e30d68f9df57ba6da 251 SUPERFAMILY SSF46626 19 215 2.85E-50 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0682 6e6dd5c86df2e607a2ca33bf446c56f0 141 Pfam PF03061 Thioesterase superfamily 32 106 3.1E-14 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_0682 6e6dd5c86df2e607a2ca33bf446c56f0 141 SUPERFAMILY SSF54637 15 136 4.23E-35 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0682 6e6dd5c86df2e607a2ca33bf446c56f0 141 Gene3D G3DSA:3.10.129.10 5 140 3.3E-38 T 12-10-2018 Alide_1080 a8f1ef963183e49d2f94854bfa253269 327 Gene3D G3DSA:3.40.190.10 128 252 2.7E-98 T 12-10-2018 Alide_1080 a8f1ef963183e49d2f94854bfa253269 327 Gene3D G3DSA:3.40.190.150 31 316 2.7E-98 T 12-10-2018 Alide_1080 a8f1ef963183e49d2f94854bfa253269 327 PIRSF PIRSF017082 1 327 2.3E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1080 a8f1ef963183e49d2f94854bfa253269 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 323 1.1E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0336 9df4c8d5c48e3c3598689494d0670e91 287 Gene3D G3DSA:3.40.50.1820 6 281 2.6E-110 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0336 9df4c8d5c48e3c3598689494d0670e91 287 Pfam PF00561 alpha/beta hydrolase fold 31 262 3.2E-30 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0336 9df4c8d5c48e3c3598689494d0670e91 287 SUPERFAMILY SSF53474 5 275 2.24E-70 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0336 9df4c8d5c48e3c3598689494d0670e91 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 58 73 2.4E-28 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0336 9df4c8d5c48e3c3598689494d0670e91 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 117 130 2.4E-28 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0336 9df4c8d5c48e3c3598689494d0670e91 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 220 234 2.4E-28 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0336 9df4c8d5c48e3c3598689494d0670e91 287 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 2.4E-28 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_1999 2dab9e6e681dcbd5dc52356d8be7ae65 233 TIGRFAM TIGR02796 tolQ: protein TolQ 7 221 6.2E-86 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 Alide_1999 2dab9e6e681dcbd5dc52356d8be7ae65 233 Pfam PF01618 MotA/TolQ/ExbB proton channel family 79 206 5.2E-40 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Alide_1999 2dab9e6e681dcbd5dc52356d8be7ae65 233 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 6 226 41.389 T 12-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 Alide_1186 6b8121c1253667ea47116cb80ef36d28 77 Gene3D G3DSA:2.30.170.40 2 77 2.5E-33 T 12-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1186 6b8121c1253667ea47116cb80ef36d28 77 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 5.3E-29 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1186 6b8121c1253667ea47116cb80ef36d28 77 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 22.228 T 12-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1186 6b8121c1253667ea47116cb80ef36d28 77 Pfam PF00830 Ribosomal L28 family 3 62 1.9E-29 T 12-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1186 6b8121c1253667ea47116cb80ef36d28 77 SUPERFAMILY SSF143800 2 75 1.45E-31 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 15 204 2.9E-81 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 SUPERFAMILY SSF142695 211 371 1.22E-43 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 Gene3D G3DSA:3.90.870.10 4 213 1.7E-85 T 12-10-2018 Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 11 206 1.2E-71 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 8 210 38.03 T 12-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 Pfam PF00925 GTP cyclohydrolase II 218 371 4.1E-36 T 12-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 PIRSF PIRSF001259 9 373 9.2E-119 T 12-10-2018 Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 SUPERFAMILY SSF55821 8 209 2.52E-84 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 Gene3D G3DSA:3.40.50.10990 314 372 5.6E-6 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Alide_2004 cf28ea019a456354f834c7a3f0ebc0a3 373 Gene3D G3DSA:3.40.50.10990 214 313 1.1E-18 T 12-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Alide_4480 66b325cbd378a0a40a8355beccffdd7e 473 Gene3D G3DSA:1.10.1200.160 404 443 2.8E-64 T 12-10-2018 Alide_4480 66b325cbd378a0a40a8355beccffdd7e 473 Pfam PF03743 Bacterial conjugation TrbI-like protein 280 464 5.5E-62 T 12-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI Alide_4480 66b325cbd378a0a40a8355beccffdd7e 473 Gene3D G3DSA:2.40.128.260 283 462 2.8E-64 T 12-10-2018 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 Gene3D G3DSA:2.40.30.10 239 330 3.7E-13 T 12-10-2018 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 PRINTS PR00315 GTP-binding elongation factor signature 79 87 3.7E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 PRINTS PR00315 GTP-binding elongation factor signature 26 39 3.7E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 PRINTS PR00315 GTP-binding elongation factor signature 99 109 3.7E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 PRINTS PR00315 GTP-binding elongation factor signature 160 169 3.7E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 PRINTS PR00315 GTP-binding elongation factor signature 115 126 3.7E-13 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 SUPERFAMILY SSF52540 25 249 8.4E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 SUPERFAMILY SSF50447 238 330 3.06E-12 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 Pfam PF00009 Elongation factor Tu GTP binding domain 25 223 3.0E-34 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 72 87 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 Gene3D G3DSA:2.40.30.10 352 453 7.7E-24 T 12-10-2018 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 452 9.5E-116 T 12-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 Gene3D G3DSA:3.40.50.300 7 233 2.8E-51 T 12-10-2018 Alide_1791 9e8c28aaecbd0528ce11b8b69d998883 455 SUPERFAMILY SSF50465 354 453 1.73E-24 T 12-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Alide_3105 729225a902a5c3f6d9df574ad32985f5 225 Pfam PF07729 FCD domain 77 199 2.7E-21 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3105 729225a902a5c3f6d9df574ad32985f5 225 SUPERFAMILY SSF46785 6 71 3.17E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3105 729225a902a5c3f6d9df574ad32985f5 225 Gene3D G3DSA:1.10.10.10 3 68 1.1E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3105 729225a902a5c3f6d9df574ad32985f5 225 SMART SM00345 9 67 5.5E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3105 729225a902a5c3f6d9df574ad32985f5 225 Gene3D G3DSA:1.20.120.530 70 208 2.8E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_3105 729225a902a5c3f6d9df574ad32985f5 225 SMART SM00895 77 200 1.4E-14 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3105 729225a902a5c3f6d9df574ad32985f5 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 67 4.7E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3105 729225a902a5c3f6d9df574ad32985f5 225 SUPERFAMILY SSF48008 72 203 1.05E-25 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2966 6cc651db66ae4d1de53725e17a615b9d 322 Gene3D G3DSA:3.40.190.10 123 246 5.3E-97 T 12-10-2018 Alide_2966 6cc651db66ae4d1de53725e17a615b9d 322 Gene3D G3DSA:3.40.190.150 26 311 5.3E-97 T 12-10-2018 Alide_2966 6cc651db66ae4d1de53725e17a615b9d 322 SUPERFAMILY SSF53850 109 283 4.02E-13 T 12-10-2018 Alide_2966 6cc651db66ae4d1de53725e17a615b9d 322 PIRSF PIRSF017082 1 321 4.5E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2966 6cc651db66ae4d1de53725e17a615b9d 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 314 6.6E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4538 c966fe04c3754b771689c1b18d575d53 183 Gene3D G3DSA:2.10.109.10 71 183 1.2E-13 T 12-10-2018 Alide_4538 c966fe04c3754b771689c1b18d575d53 183 Pfam PF10502 Signal peptidase, peptidase S26 61 183 5.6E-17 T 12-10-2018 IPR019533 Peptidase S26 Alide_4538 c966fe04c3754b771689c1b18d575d53 183 SUPERFAMILY SSF51306 63 183 1.41E-22 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_4538 c966fe04c3754b771689c1b18d575d53 183 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 69 180 1.7E-13 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Alide_3307 c9588b19ac396727beaa3e053fa3d225 170 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 7 165 34.717 T 12-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 Alide_3307 c9588b19ac396727beaa3e053fa3d225 170 Gene3D G3DSA:1.10.10.10 84 167 1.3E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3307 c9588b19ac396727beaa3e053fa3d225 170 Gene3D G3DSA:3.30.160.70 3 81 8.0E-17 T 12-10-2018 Alide_3307 c9588b19ac396727beaa3e053fa3d225 170 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 4 82 4.7E-6 T 12-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Alide_3307 c9588b19ac396727beaa3e053fa3d225 170 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 86 165 1.7E-29 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Alide_3307 c9588b19ac396727beaa3e053fa3d225 170 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 135 141 - T 12-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Alide_3307 c9588b19ac396727beaa3e053fa3d225 170 SUPERFAMILY SSF53155 3 89 6.08E-19 T 12-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Alide_3307 c9588b19ac396727beaa3e053fa3d225 170 SUPERFAMILY SSF46767 84 165 1.44E-29 T 12-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 Alide_3307 c9588b19ac396727beaa3e053fa3d225 170 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 85 164 8.0E-33 T 12-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Alide_4298 91223700701b79681507eb5733da8e5a 373 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 369 38.559 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Alide_4298 91223700701b79681507eb5733da8e5a 373 Gene3D G3DSA:3.40.50.620 1 214 3.1E-91 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_4298 91223700701b79681507eb5733da8e5a 373 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 368 8.3E-126 T 12-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Alide_4298 91223700701b79681507eb5733da8e5a 373 Pfam PF03054 tRNA methyl transferase 7 368 3.6E-131 T 12-10-2018 Alide_4298 91223700701b79681507eb5733da8e5a 373 SUPERFAMILY SSF52402 5 246 5.07E-57 T 12-10-2018 Alide_4298 91223700701b79681507eb5733da8e5a 373 Gene3D G3DSA:2.40.30.10 291 372 3.2E-25 T 12-10-2018 Alide_4298 91223700701b79681507eb5733da8e5a 373 Gene3D G3DSA:2.30.30.280 215 289 4.6E-24 T 12-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Alide_3216 5d4e65e9b96149cbdd463c84e1d7295c 385 Gene3D G3DSA:1.10.540.10 1 119 6.3E-25 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3216 5d4e65e9b96149cbdd463c84e1d7295c 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 4.7E-20 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3216 5d4e65e9b96149cbdd463c84e1d7295c 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 225 372 3.9E-37 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3216 5d4e65e9b96149cbdd463c84e1d7295c 385 SUPERFAMILY SSF47203 225 377 7.93E-41 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3216 5d4e65e9b96149cbdd463c84e1d7295c 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 213 3.3E-18 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3216 5d4e65e9b96149cbdd463c84e1d7295c 385 SUPERFAMILY SSF56645 1 221 2.36E-57 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3216 5d4e65e9b96149cbdd463c84e1d7295c 385 Gene3D G3DSA:2.40.110.10 121 230 2.3E-28 T 12-10-2018 Alide_3216 5d4e65e9b96149cbdd463c84e1d7295c 385 Gene3D G3DSA:1.20.140.10 231 377 3.5E-39 T 12-10-2018 Alide_3130 bed0e5109068f900d04462b591ef19f0 373 Pfam PF01136 Peptidase family U32 118 372 1.4E-67 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Alide_3130 bed0e5109068f900d04462b591ef19f0 373 ProSitePatterns PS01276 Peptidase family U32 signature. 202 220 - T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Alide_3716 77643278cb7d420fc97d578a6442fe6a 434 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 326 395 5.0E-5 T 12-10-2018 IPR019489 Clp ATPase, C-terminal Alide_3716 77643278cb7d420fc97d578a6442fe6a 434 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 434 42.083 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Alide_3716 77643278cb7d420fc97d578a6442fe6a 434 SMART SM00382 46 323 1.4E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3716 77643278cb7d420fc97d578a6442fe6a 434 Gene3D G3DSA:1.10.8.60 326 431 8.4E-37 T 12-10-2018 Alide_3716 77643278cb7d420fc97d578a6442fe6a 434 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 50 96 3.7E-6 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_3716 77643278cb7d420fc97d578a6442fe6a 434 Pfam PF07724 AAA domain (Cdc48 subfamily) 175 320 4.1E-42 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_3716 77643278cb7d420fc97d578a6442fe6a 434 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 1 434 1.0E-203 T 12-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Alide_3716 77643278cb7d420fc97d578a6442fe6a 434 SMART SM01086 326 422 2.5E-21 T 12-10-2018 IPR019489 Clp ATPase, C-terminal Alide_3716 77643278cb7d420fc97d578a6442fe6a 434 SUPERFAMILY SSF52540 1 432 2.62E-87 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2422 31daa3acd9eb542824ecf81c1bf7e4bf 257 Gene3D G3DSA:3.40.50.300 7 244 1.8E-57 T 12-10-2018 Alide_2422 31daa3acd9eb542824ecf81c1bf7e4bf 257 SUPERFAMILY SSF52540 6 237 3.38E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2422 31daa3acd9eb542824ecf81c1bf7e4bf 257 SMART SM00382 32 229 4.2E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2422 31daa3acd9eb542824ecf81c1bf7e4bf 257 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2422 31daa3acd9eb542824ecf81c1bf7e4bf 257 Pfam PF00005 ABC transporter 23 177 9.5E-19 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2422 31daa3acd9eb542824ecf81c1bf7e4bf 257 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 8 249 4.2E-91 T 12-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 Pfam PF00258 Flavodoxin 337 456 6.5E-14 T 12-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 Gene3D G3DSA:2.40.30.10 522 586 1.3E-8 T 12-10-2018 Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 Gene3D G3DSA:3.40.50.360 319 479 6.7E-25 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 Pfam PF00970 Oxidoreductase FAD-binding domain 539 584 3.1E-5 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 SUPERFAMILY SSF52218 332 480 3.49E-30 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 SUPERFAMILY SSF63380 527 596 1.36E-15 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 SUPERFAMILY SSF52343 601 734 3.27E-27 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 Pfam PF00175 Oxidoreductase NAD-binding domain 605 705 1.3E-9 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 546 553 7.0E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 529 539 7.0E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 669 685 7.0E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 604 623 7.0E-9 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 Pfam PF03929 PepSY-associated TM region 6 316 6.8E-37 T 12-10-2018 IPR005625 PepSY-associated TM protein Alide_2868 c08ba6dd1d630fcddd91015acf3a4468 734 Gene3D G3DSA:3.40.50.80 598 734 9.3E-28 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 Gene3D G3DSA:3.30.70.1430 568 670 2.9E-256 T 12-10-2018 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 SUPERFAMILY SSF82693 46 127 5.75E-20 T 12-10-2018 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 Gene3D G3DSA:3.30.70.1440 671 868 2.9E-256 T 12-10-2018 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 Gene3D G3DSA:1.20.1640.10 15 515 2.9E-256 T 12-10-2018 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 SUPERFAMILY SSF82866 805 1038 2.22E-44 T 12-10-2018 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 Pfam PF00873 AcrB/AcrD/AcrF family 6 1035 9.7E-234 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1037 0.0 T 12-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 SUPERFAMILY SSF82714 185 268 6.93E-18 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 2.5E-22 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 2.5E-22 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 2.5E-22 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 2.5E-22 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 PRINTS PR00702 Acriflavin resistance protein family signature 360 381 2.5E-22 T 12-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 SUPERFAMILY SSF82866 293 505 1.96E-39 T 12-10-2018 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 Gene3D G3DSA:3.30.70.1430 42 818 2.9E-256 T 12-10-2018 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 Gene3D G3DSA:3.30.2090.10 722 810 2.9E-256 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 Gene3D G3DSA:1.20.1640.10 516 1032 2.9E-256 T 12-10-2018 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 SUPERFAMILY SSF82693 137 327 4.45E-20 T 12-10-2018 Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 SUPERFAMILY SSF82714 722 806 1.44E-14 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 Gene3D G3DSA:3.30.2090.10 182 273 2.9E-256 T 12-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Alide_2726 a0c43a43b18b5def38533392ec0d4255 1039 Gene3D G3DSA:3.30.70.1320 135 327 2.9E-256 T 12-10-2018 Alide_1622 30de244491ddf92f79c9cdd0b26158ae 218 Gene3D G3DSA:3.40.50.300 1 210 5.5E-62 T 12-10-2018 Alide_1622 30de244491ddf92f79c9cdd0b26158ae 218 SUPERFAMILY SSF52540 1 203 2.77E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1622 30de244491ddf92f79c9cdd0b26158ae 218 Pfam PF02223 Thymidylate kinase 9 201 6.9E-44 T 12-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 Alide_1622 30de244491ddf92f79c9cdd0b26158ae 218 Hamap MF_00165 Thymidylate kinase [tmk]. 5 211 28.764 T 12-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Alide_1622 30de244491ddf92f79c9cdd0b26158ae 218 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 201 6.2E-44 T 12-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Alide_1733 cc9d0be8f5d0ed4c3f5b0b0911dccbb2 224 Pfam PF03737 Aldolase/RraA 21 175 2.4E-33 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_1733 cc9d0be8f5d0ed4c3f5b0b0911dccbb2 224 Gene3D G3DSA:3.50.30.100 1 198 1.4E-56 T 12-10-2018 Alide_1733 cc9d0be8f5d0ed4c3f5b0b0911dccbb2 224 SUPERFAMILY SSF89562 19 186 4.45E-38 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_2691 8a04f2b829766f0ef3c7a871e6cfa21a 574 SUPERFAMILY SSF52518 22 196 7.99E-51 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2691 8a04f2b829766f0ef3c7a871e6cfa21a 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 23 187 1.1E-51 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Alide_2691 8a04f2b829766f0ef3c7a871e6cfa21a 574 Gene3D G3DSA:3.40.50.970 379 570 5.5E-59 T 12-10-2018 Alide_2691 8a04f2b829766f0ef3c7a871e6cfa21a 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 208 345 5.7E-24 T 12-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Alide_2691 8a04f2b829766f0ef3c7a871e6cfa21a 574 Gene3D G3DSA:3.40.50.970 11 194 4.3E-60 T 12-10-2018 Alide_2691 8a04f2b829766f0ef3c7a871e6cfa21a 574 Gene3D G3DSA:3.40.50.1220 197 371 1.7E-32 T 12-10-2018 Alide_2691 8a04f2b829766f0ef3c7a871e6cfa21a 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 404 550 3.4E-42 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Alide_2691 8a04f2b829766f0ef3c7a871e6cfa21a 574 SUPERFAMILY SSF52467 173 372 2.84E-34 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_2691 8a04f2b829766f0ef3c7a871e6cfa21a 574 SUPERFAMILY SSF52518 382 560 1.57E-59 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_3782 cb4e33d47aa637e79c543c83156343ee 152 SUPERFAMILY SSF69118 7 144 3.65E-47 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_3782 cb4e33d47aa637e79c543c83156343ee 152 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 78 1.9E-18 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_3782 cb4e33d47aa637e79c543c83156343ee 152 Pfam PF02627 Carboxymuconolactone decarboxylase family 13 94 1.9E-21 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_3782 cb4e33d47aa637e79c543c83156343ee 152 Gene3D G3DSA:1.20.1290.10 1 146 8.7E-53 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_3790 982a052cd9487b2e4803abdaf449ed07 221 Gene3D G3DSA:3.30.420.10 39 218 1.3E-34 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_3790 982a052cd9487b2e4803abdaf449ed07 221 SMART SM00479 41 220 5.3E-23 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_3790 982a052cd9487b2e4803abdaf449ed07 221 Pfam PF00929 Exonuclease 43 210 2.1E-18 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_3790 982a052cd9487b2e4803abdaf449ed07 221 SUPERFAMILY SSF53098 40 216 1.18E-35 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_2675 6d039832f0dcb34dd7a57d9e414b32af 301 Gene3D G3DSA:3.40.190.290 94 298 2.0E-47 T 12-10-2018 Alide_2675 6d039832f0dcb34dd7a57d9e414b32af 301 Pfam PF03466 LysR substrate binding domain 91 296 1.3E-45 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2675 6d039832f0dcb34dd7a57d9e414b32af 301 Gene3D G3DSA:1.10.10.10 3 93 5.9E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2675 6d039832f0dcb34dd7a57d9e414b32af 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 7.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2675 6d039832f0dcb34dd7a57d9e414b32af 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 7.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2675 6d039832f0dcb34dd7a57d9e414b32af 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 7.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2675 6d039832f0dcb34dd7a57d9e414b32af 301 SUPERFAMILY SSF46785 3 113 1.43E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2675 6d039832f0dcb34dd7a57d9e414b32af 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 5.1E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2675 6d039832f0dcb34dd7a57d9e414b32af 301 SUPERFAMILY SSF53850 92 297 1.48E-44 T 12-10-2018 Alide_3680 221db8592e13a9ea39bd58f9096f3137 239 Gene3D G3DSA:1.10.1740.10 14 122 4.3E-27 T 12-10-2018 Alide_3680 221db8592e13a9ea39bd58f9096f3137 239 Pfam PF08281 Sigma-70, region 4 146 198 6.4E-12 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_3680 221db8592e13a9ea39bd58f9096f3137 239 SUPERFAMILY SSF88946 16 119 3.77E-26 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_3680 221db8592e13a9ea39bd58f9096f3137 239 SUPERFAMILY SSF88659 123 203 9.35E-15 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_3680 221db8592e13a9ea39bd58f9096f3137 239 Pfam PF04542 Sigma-70 region 2 39 105 4.7E-14 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Alide_3680 221db8592e13a9ea39bd58f9096f3137 239 Gene3D G3DSA:1.10.10.10 123 205 8.3E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3680 221db8592e13a9ea39bd58f9096f3137 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 34 202 1.4E-30 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_2431 23b07538ce51a483c66a3f96574fdb86 448 PIRSF PIRSF000423 2 448 9.4E-178 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Alide_2431 23b07538ce51a483c66a3f96574fdb86 448 Pfam PF00696 Amino acid kinase family 27 274 1.8E-25 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Alide_2431 23b07538ce51a483c66a3f96574fdb86 448 SUPERFAMILY SSF53633 5 299 2.23E-61 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_2431 23b07538ce51a483c66a3f96574fdb86 448 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 448 218.348 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Alide_2431 23b07538ce51a483c66a3f96574fdb86 448 SUPERFAMILY SSF55729 303 425 1.45E-18 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_2431 23b07538ce51a483c66a3f96574fdb86 448 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 9 448 2.5E-180 T 12-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 Alide_2431 23b07538ce51a483c66a3f96574fdb86 448 Gene3D G3DSA:3.40.1160.10 7 300 1.9E-84 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_2431 23b07538ce51a483c66a3f96574fdb86 448 Gene3D G3DSA:3.40.630.30 301 448 5.5E-37 T 12-10-2018 Alide_2431 23b07538ce51a483c66a3f96574fdb86 448 Pfam PF00583 Acetyltransferase (GNAT) family 322 408 4.9E-9 T 12-10-2018 IPR000182 GNAT domain Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 SUPERFAMILY SSF52540 5 225 6.74E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 Gene3D G3DSA:1.20.272.10 230 334 8.8E-46 T 12-10-2018 Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 Pfam PF16193 AAA C-terminal domain 182 256 2.0E-23 T 12-10-2018 IPR032423 AAA C-terminal domain Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 Gene3D G3DSA:3.40.50.300 1 160 3.0E-40 T 12-10-2018 Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 Gene3D G3DSA:1.10.8.60 162 229 3.9E-7 T 12-10-2018 Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 Gene3D G3DSA:1.10.3710.10 335 433 4.3E-34 T 12-10-2018 Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 Pfam PF12002 MgsA AAA+ ATPase C terminal 257 423 9.2E-68 T 12-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 49 157 1.5E-13 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 SUPERFAMILY SSF48019 241 423 2.15E-75 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Alide_1192 c467ecea7c6e8554d32ef44159a61093 437 SMART SM00382 44 162 4.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1274 70962dc7e91447007839980d2010156f 163 Pfam PF06891 P2 phage tail completion protein R (GpR) 2 133 3.7E-39 T 12-10-2018 IPR009678 Bacteriophage tail completion protein R Alide_2364 22c7384a882844eaf6e76faf531efc99 306 Gene3D G3DSA:1.10.8.300 198 304 1.5E-25 T 12-10-2018 Alide_2364 22c7384a882844eaf6e76faf531efc99 306 Gene3D G3DSA:3.40.50.300 18 183 4.1E-45 T 12-10-2018 Alide_2364 22c7384a882844eaf6e76faf531efc99 306 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 37 167 6.0E-62 T 12-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Alide_2364 22c7384a882844eaf6e76faf531efc99 306 SMART SM00382 34 175 2.0E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2364 22c7384a882844eaf6e76faf531efc99 306 SUPERFAMILY SSF52540 5 281 2.83E-42 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2364 22c7384a882844eaf6e76faf531efc99 306 PIRSF PIRSF002849 1 306 3.0E-120 T 12-10-2018 Alide_1259 4428d6585b32dcde03d49266509d3ac2 38 Pfam PF06528 Phage P2 GpE 1 36 1.5E-20 T 12-10-2018 IPR009493 Burkholderia phage phiE202, Gp27 Alide_1800 3550056cf09dcd89967cb8d309ce2a7e 339 Gene3D G3DSA:3.40.190.10 124 334 1.6E-131 T 12-10-2018 Alide_1800 3550056cf09dcd89967cb8d309ce2a7e 339 SUPERFAMILY SSF53850 32 337 2.32E-86 T 12-10-2018 Alide_1800 3550056cf09dcd89967cb8d309ce2a7e 339 Gene3D G3DSA:3.40.190.10 37 304 1.6E-131 T 12-10-2018 Alide_1800 3550056cf09dcd89967cb8d309ce2a7e 339 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 28 335 3.0E-141 T 12-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 Alide_1800 3550056cf09dcd89967cb8d309ce2a7e 339 Pfam PF13531 Bacterial extracellular solute-binding protein 52 289 1.1E-46 T 12-10-2018 Alide_1800 3550056cf09dcd89967cb8d309ce2a7e 339 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 155 163 - T 12-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 Alide_3010 cfece6ac5128dbb8fb71af0f70361cb5 210 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 24 205 1.9E-52 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Alide_3010 cfece6ac5128dbb8fb71af0f70361cb5 210 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 22 206 31.597 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Alide_3010 cfece6ac5128dbb8fb71af0f70361cb5 210 Pfam PF02669 K+-transporting ATPase, c chain 27 204 4.2E-63 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Alide_3010 cfece6ac5128dbb8fb71af0f70361cb5 210 PIRSF PIRSF001296 22 210 6.8E-64 T 12-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Alide_2351 81f778243b742454c8dd650a4f803c36 371 Gene3D G3DSA:3.90.180.10 6 364 1.6E-146 T 12-10-2018 Alide_2351 81f778243b742454c8dd650a4f803c36 371 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 2.0E-217 T 12-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 Alide_2351 81f778243b742454c8dd650a4f803c36 371 SUPERFAMILY SSF50129 318 369 8.47E-10 T 12-10-2018 IPR011032 GroES-like superfamily Alide_2351 81f778243b742454c8dd650a4f803c36 371 SUPERFAMILY SSF50129 1 184 3.65E-70 T 12-10-2018 IPR011032 GroES-like superfamily Alide_2351 81f778243b742454c8dd650a4f803c36 371 Pfam PF00107 Zinc-binding dehydrogenase 197 329 1.0E-24 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_2351 81f778243b742454c8dd650a4f803c36 371 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Alide_2351 81f778243b742454c8dd650a4f803c36 371 Gene3D G3DSA:3.40.50.720 174 312 1.6E-146 T 12-10-2018 Alide_2351 81f778243b742454c8dd650a4f803c36 371 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 1.8E-25 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_2351 81f778243b742454c8dd650a4f803c36 371 SMART SM00829 12 367 7.3E-4 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_2351 81f778243b742454c8dd650a4f803c36 371 SUPERFAMILY SSF51735 161 334 2.88E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Gene3D G3DSA:3.90.1110.10 319 453 7.8E-32 T 12-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Pfam PF10385 RNA polymerase beta subunit external 1 domain 603 668 1.5E-25 T 12-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Gene3D G3DSA:2.40.50.100 726 800 5.4E-29 T 12-10-2018 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Gene3D G3DSA:3.90.1100.10 22 182 9.9E-50 T 12-10-2018 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Gene3D G3DSA:3.90.1100.10 655 725 2.3E-20 T 12-10-2018 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Gene3D G3DSA:3.90.1800.10 1284 1337 4.5E-11 T 12-10-2018 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Gene3D G3DSA:2.40.50.150 845 965 1.4E-43 T 12-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Pfam PF04560 RNA polymerase Rpb2, domain 7 1298 1372 6.0E-27 T 12-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Pfam PF04563 RNA polymerase beta subunit 30 512 2.4E-33 T 12-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Pfam PF04565 RNA polymerase Rpb2, domain 3 525 592 7.9E-31 T 12-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 SUPERFAMILY SSF64484 15 1372 0.0 T 12-10-2018 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Pfam PF00562 RNA polymerase Rpb2, domain 6 730 1296 1.9E-156 T 12-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Gene3D G3DSA:2.40.270.10 802 844 1.2E-6 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1088 1100 - T 12-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Gene3D G3DSA:3.90.1100.10 454 637 4.6E-70 T 12-10-2018 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Gene3D G3DSA:2.40.270.10 1060 1274 1.1E-79 T 12-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 17 1374 12.218 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Pfam PF04561 RNA polymerase Rpb2, domain 2 162 234 1.3E-6 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 Pfam PF04561 RNA polymerase Rpb2, domain 2 374 466 4.1E-14 T 12-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0462 b9f7bc81376402cf48dbc9b2ba569990 1374 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 13 1371 0.0 T 12-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0427 dd1e3007fd0ecb7c94d6d162c995a2fd 89 Pfam PF00381 PTS HPr component phosphorylation site 3 81 3.5E-25 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like Alide_0427 dd1e3007fd0ecb7c94d6d162c995a2fd 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 2.6E-29 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like Alide_0427 dd1e3007fd0ecb7c94d6d162c995a2fd 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 12-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Alide_0427 dd1e3007fd0ecb7c94d6d162c995a2fd 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 5.5E-12 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like Alide_0427 dd1e3007fd0ecb7c94d6d162c995a2fd 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 5.5E-12 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like Alide_0427 dd1e3007fd0ecb7c94d6d162c995a2fd 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 5.5E-12 T 12-10-2018 IPR000032 Phosphocarrier protein HPr-like Alide_0427 dd1e3007fd0ecb7c94d6d162c995a2fd 89 SUPERFAMILY SSF55594 1 87 1.96E-27 T 12-10-2018 IPR035895 HPr-like superfamily Alide_0427 dd1e3007fd0ecb7c94d6d162c995a2fd 89 Gene3D G3DSA:3.30.1340.10 1 88 2.1E-29 T 12-10-2018 IPR035895 HPr-like superfamily Alide_0427 dd1e3007fd0ecb7c94d6d162c995a2fd 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 12-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Alide_1216 44262cdd334a0271e50fdd91a01775a3 584 Pfam PF00271 Helicase conserved C-terminal domain 319 418 2.0E-24 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1216 44262cdd334a0271e50fdd91a01775a3 584 Pfam PF00270 DEAD/DEAH box helicase 55 268 2.2E-42 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_1216 44262cdd334a0271e50fdd91a01775a3 584 Gene3D G3DSA:3.40.50.300 291 460 5.3E-45 T 12-10-2018 Alide_1216 44262cdd334a0271e50fdd91a01775a3 584 SMART SM00490 337 418 2.0E-29 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_1216 44262cdd334a0271e50fdd91a01775a3 584 SMART SM00487 50 288 7.6E-45 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_1216 44262cdd334a0271e50fdd91a01775a3 584 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 227 235 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Alide_1216 44262cdd334a0271e50fdd91a01775a3 584 SUPERFAMILY SSF52540 151 437 6.54E-66 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3518 a6dfab50488d5fa16090586ee1740c2a 219 SUPERFAMILY SSF46626 133 209 1.41E-16 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3518 a6dfab50488d5fa16090586ee1740c2a 219 Gene3D G3DSA:1.10.760.10 27 107 1.1E-19 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3518 a6dfab50488d5fa16090586ee1740c2a 219 Gene3D G3DSA:1.10.760.10 126 206 1.8E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3518 a6dfab50488d5fa16090586ee1740c2a 219 SUPERFAMILY SSF46626 7 107 5.27E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3518 a6dfab50488d5fa16090586ee1740c2a 219 PIRSF PIRSF000005 1 208 1.0E-36 T 12-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Alide_3518 a6dfab50488d5fa16090586ee1740c2a 219 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 124 203 2.4E-5 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3518 a6dfab50488d5fa16090586ee1740c2a 219 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 37 104 3.8E-5 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0500 40a5305e3da26864622fe408f6598538 282 SUPERFAMILY SSF53328 86 282 2.62E-61 T 12-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_0500 40a5305e3da26864622fe408f6598538 282 Pfam PF00551 Formyl transferase 86 263 1.4E-39 T 12-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Alide_0500 40a5305e3da26864622fe408f6598538 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 2 281 47.22 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Alide_0500 40a5305e3da26864622fe408f6598538 282 PIRSF PIRSF036480 2 282 2.0E-109 T 12-10-2018 Alide_0500 40a5305e3da26864622fe408f6598538 282 Gene3D G3DSA:3.30.70.260 1 84 5.0E-26 T 12-10-2018 Alide_0500 40a5305e3da26864622fe408f6598538 282 Gene3D G3DSA:3.40.50.170 86 282 8.3E-70 T 12-10-2018 Alide_0500 40a5305e3da26864622fe408f6598538 282 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 6 281 2.6E-101 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Alide_0500 40a5305e3da26864622fe408f6598538 282 SUPERFAMILY SSF55021 3 80 2.66E-16 T 12-10-2018 Alide_0500 40a5305e3da26864622fe408f6598538 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 109 136 4.8E-54 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Alide_0500 40a5305e3da26864622fe408f6598538 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 87 109 4.8E-54 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Alide_0500 40a5305e3da26864622fe408f6598538 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 233 255 4.8E-54 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Alide_0500 40a5305e3da26864622fe408f6598538 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 39 51 4.8E-54 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Alide_0500 40a5305e3da26864622fe408f6598538 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 255 280 4.8E-54 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Alide_0500 40a5305e3da26864622fe408f6598538 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 7 33 4.8E-54 T 12-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 Alide_1615 5a3e007879da619a270ce1c80853d51a 193 Pfam PF03928 Haem-degrading 61 185 3.6E-26 T 12-10-2018 IPR005624 Haem-degrading Alide_1615 5a3e007879da619a270ce1c80853d51a 193 Gene3D G3DSA:3.30.450.150 27 190 9.7E-38 T 12-10-2018 IPR038084 GlcG-like domain superfamily Alide_1615 5a3e007879da619a270ce1c80853d51a 193 SUPERFAMILY SSF143744 54 188 2.88E-33 T 12-10-2018 IPR038084 GlcG-like domain superfamily Alide_0529 0107ef86f7f8b5bf5989c5db3b1fdd0a 291 SUPERFAMILY SSF51621 10 241 3.14E-58 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_0529 0107ef86f7f8b5bf5989c5db3b1fdd0a 291 Gene3D G3DSA:3.20.20.60 2 291 7.0E-84 T 12-10-2018 Alide_0529 0107ef86f7f8b5bf5989c5db3b1fdd0a 291 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 12 231 8.1E-42 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Alide_0529 0107ef86f7f8b5bf5989c5db3b1fdd0a 291 PIRSF PIRSF015582 1 291 5.7E-70 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like Alide_2441 9374b451fae8b54658f85b892fe0423c 302 SUPERFAMILY SSF51569 13 300 1.15E-99 T 12-10-2018 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 145 175 - T 12-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 Gene3D G3DSA:3.20.20.70 10 301 2.4E-104 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 140 157 2.2E-30 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 47 68 2.2E-30 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 115 131 2.2E-30 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 83 101 2.2E-30 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 13 299 60.54 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 Pfam PF00701 Dihydrodipicolinate synthetase family 15 298 1.3E-85 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 17 298 1.5E-93 T 12-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 PIRSF PIRSF001365 12 302 2.2E-88 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_2441 9374b451fae8b54658f85b892fe0423c 302 SMART SM01130 13 301 1.4E-131 T 12-10-2018 IPR002220 DapA-like GO:0016829 Alide_1552 7d12b7db06d50537fd2327eb274e277b 261 Gene3D G3DSA:3.10.50.40 126 248 8.8E-33 T 12-10-2018 Alide_1552 7d12b7db06d50537fd2327eb274e277b 261 SUPERFAMILY SSF109998 27 161 2.51E-16 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily Alide_1552 7d12b7db06d50537fd2327eb274e277b 261 SUPERFAMILY SSF54534 133 227 2.22E-28 T 12-10-2018 Alide_1552 7d12b7db06d50537fd2327eb274e277b 261 Pfam PF13616 PPIC-type PPIASE domain 129 223 1.0E-22 T 12-10-2018 Alide_0301 efa4cd76ea746fbea76c212a6ca3df5e 348 Pfam PF00535 Glycosyl transferase family 2 10 146 2.1E-28 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Alide_0301 efa4cd76ea746fbea76c212a6ca3df5e 348 SUPERFAMILY SSF53448 7 239 1.22E-42 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0301 efa4cd76ea746fbea76c212a6ca3df5e 348 Gene3D G3DSA:3.90.550.10 1 262 2.8E-35 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0424 2fcaf6e4dfd631ad2f8472a0b44ba5df 167 Pfam PF08534 Redoxin 28 151 7.8E-26 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Alide_0424 2fcaf6e4dfd631ad2f8472a0b44ba5df 167 SUPERFAMILY SSF52833 30 166 5.28E-37 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0424 2fcaf6e4dfd631ad2f8472a0b44ba5df 167 Gene3D G3DSA:3.40.30.10 24 167 4.7E-38 T 12-10-2018 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 Gene3D G3DSA:1.10.1040.50 485 703 2.0E-75 T 12-10-2018 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 SUPERFAMILY SSF52096 8 290 5.94E-63 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 SUPERFAMILY SSF48179 481 624 6.29E-28 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 482 575 3.3E-24 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 611 696 1.5E-5 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 224 1.1E-32 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 Gene3D G3DSA:3.90.226.10 10 287 1.4E-82 T 12-10-2018 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 SUPERFAMILY SSF51735 299 477 1.65E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 301 477 3.0E-57 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 97 117 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 Gene3D G3DSA:3.40.50.720 298 484 1.8E-60 T 12-10-2018 Alide_3762 ae1a0d27d4aa31b895c70021d7d6ee46 705 SUPERFAMILY SSF48179 607 698 3.06E-22 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_3884 e24766bc0a37b20663dd15a5f8c455c4 227 Hamap MF_00415 Flagellar L-ring protein [flgH]. 5 225 23.475 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Alide_3884 e24766bc0a37b20663dd15a5f8c455c4 227 Pfam PF02107 Flagellar L-ring protein 49 226 7.3E-56 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Alide_3884 e24766bc0a37b20663dd15a5f8c455c4 227 PRINTS PR01008 Flagellar L-ring protein signature 188 202 1.3E-19 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Alide_3884 e24766bc0a37b20663dd15a5f8c455c4 227 PRINTS PR01008 Flagellar L-ring protein signature 70 82 1.3E-19 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Alide_3884 e24766bc0a37b20663dd15a5f8c455c4 227 PRINTS PR01008 Flagellar L-ring protein signature 141 156 1.3E-19 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Alide_3884 e24766bc0a37b20663dd15a5f8c455c4 227 PRINTS PR01008 Flagellar L-ring protein signature 167 183 1.3E-19 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Alide_3884 e24766bc0a37b20663dd15a5f8c455c4 227 PRINTS PR01008 Flagellar L-ring protein signature 204 218 1.3E-19 T 12-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 Alide_0255 68612101164ab7b6bfa443cc31f1eb81 454 Gene3D G3DSA:3.30.160.390 4 93 8.2E-10 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Alide_0255 68612101164ab7b6bfa443cc31f1eb81 454 SUPERFAMILY SSF56349 98 379 2.71E-55 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_0255 68612101164ab7b6bfa443cc31f1eb81 454 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 99 153 2.2E-13 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Alide_0255 68612101164ab7b6bfa443cc31f1eb81 454 Pfam PF13356 Arm DNA-binding domain 6 91 1.9E-15 T 12-10-2018 IPR025166 Integrase, DNA-binding domain Alide_0255 68612101164ab7b6bfa443cc31f1eb81 454 Pfam PF00589 Phage integrase family 204 370 3.1E-18 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_0255 68612101164ab7b6bfa443cc31f1eb81 454 Gene3D G3DSA:1.10.150.130 94 203 2.7E-23 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_0255 68612101164ab7b6bfa443cc31f1eb81 454 Gene3D G3DSA:1.10.443.10 204 391 7.8E-22 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_3712 6e080f3702397af9152574919c6e73dd 582 Gene3D G3DSA:3.90.1310.30 59 233 1.1E-45 T 12-10-2018 Alide_3712 6e080f3702397af9152574919c6e73dd 582 SUPERFAMILY SSF56519 62 232 6.02E-45 T 12-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Alide_3712 6e080f3702397af9152574919c6e73dd 582 Gene3D G3DSA:3.30.450.330 234 559 4.3E-110 T 12-10-2018 Alide_3712 6e080f3702397af9152574919c6e73dd 582 SUPERFAMILY SSF56601 184 567 6.15E-89 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Alide_3712 6e080f3702397af9152574919c6e73dd 582 Gene3D G3DSA:3.40.710.10 294 476 4.3E-110 T 12-10-2018 Alide_3712 6e080f3702397af9152574919c6e73dd 582 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 18 570 42.257 T 12-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_3712 6e080f3702397af9152574919c6e73dd 582 Pfam PF00905 Penicillin binding protein transpeptidase domain 258 554 4.9E-72 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Alide_3712 6e080f3702397af9152574919c6e73dd 582 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 216 7.3E-19 T 12-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Alide_3299 0525a670e63fa49ec2df702419c80286 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 63 74 2.1E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3299 0525a670e63fa49ec2df702419c80286 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 116 124 2.1E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3299 0525a670e63fa49ec2df702419c80286 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 155 2.1E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3299 0525a670e63fa49ec2df702419c80286 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 123 151 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_3299 0525a670e63fa49ec2df702419c80286 241 SUPERFAMILY SSF51735 1 239 2.98E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3299 0525a670e63fa49ec2df702419c80286 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 63 74 3.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3299 0525a670e63fa49ec2df702419c80286 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 174 3.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3299 0525a670e63fa49ec2df702419c80286 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 110 126 3.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3299 0525a670e63fa49ec2df702419c80286 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 155 3.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3299 0525a670e63fa49ec2df702419c80286 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 3.6E-31 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3299 0525a670e63fa49ec2df702419c80286 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 1 236 2.4E-46 T 12-10-2018 Alide_3299 0525a670e63fa49ec2df702419c80286 241 Gene3D G3DSA:3.40.50.720 1 240 3.9E-64 T 12-10-2018 Alide_2614 78296d1507282a8374d94c5c67f8ae24 492 Pfam PF00860 Permease family 26 403 1.5E-87 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Alide_2614 78296d1507282a8374d94c5c67f8ae24 492 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 351 371 - T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Alide_2614 78296d1507282a8374d94c5c67f8ae24 492 TIGRFAM TIGR03173 pbuX: xanthine permease 28 436 3.8E-151 T 12-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 Alide_2614 78296d1507282a8374d94c5c67f8ae24 492 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 25 434 9.0E-102 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Alide_4323 c2aa35a0aa26d2a959628e06fcc55d24 235 Pfam PF00677 Lumazine binding domain 3 88 4.8E-19 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_4323 c2aa35a0aa26d2a959628e06fcc55d24 235 Pfam PF00677 Lumazine binding domain 101 186 3.4E-18 T 12-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_4323 c2aa35a0aa26d2a959628e06fcc55d24 235 SUPERFAMILY SSF63380 1 89 5.1E-23 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_4323 c2aa35a0aa26d2a959628e06fcc55d24 235 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 1.1E-54 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_4323 c2aa35a0aa26d2a959628e06fcc55d24 235 SUPERFAMILY SSF63380 94 201 2.21E-25 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_4323 c2aa35a0aa26d2a959628e06fcc55d24 235 Gene3D G3DSA:2.40.30.20 1 88 2.1E-26 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_4323 c2aa35a0aa26d2a959628e06fcc55d24 235 Gene3D G3DSA:2.40.30.20 103 205 3.7E-23 T 12-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_4323 c2aa35a0aa26d2a959628e06fcc55d24 235 PIRSF PIRSF000498 1 213 4.7E-54 T 12-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_3706 c65febeaaad85060a5228e6b8edafcc0 354 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 183 337 1.7E-39 T 12-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Alide_3706 c65febeaaad85060a5228e6b8edafcc0 354 SUPERFAMILY SSF53756 5 352 2.3E-120 T 12-10-2018 Alide_3706 c65febeaaad85060a5228e6b8edafcc0 354 Gene3D G3DSA:3.40.50.2000 7 159 1.1E-113 T 12-10-2018 Alide_3706 c65febeaaad85060a5228e6b8edafcc0 354 Gene3D G3DSA:3.40.50.2000 160 319 1.1E-113 T 12-10-2018 Alide_3706 c65febeaaad85060a5228e6b8edafcc0 354 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 6 353 35.569 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3706 c65febeaaad85060a5228e6b8edafcc0 354 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 7 143 4.0E-37 T 12-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3706 c65febeaaad85060a5228e6b8edafcc0 354 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 4 347 9.4E-101 T 12-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 SUPERFAMILY SSF46785 4 111 3.18E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 Gene3D G3DSA:1.10.10.10 2 84 1.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 Gene3D G3DSA:3.40.190.10 92 277 4.9E-54 T 12-10-2018 Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 Gene3D G3DSA:3.40.190.10 162 267 4.9E-54 T 12-10-2018 Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 SUPERFAMILY SSF53850 87 298 1.55E-36 T 12-10-2018 Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.2E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 Pfam PF03466 LysR substrate binding domain 88 293 3.0E-39 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2786 30f3f9c4cd5326576deb15ba5ceba78a 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 66 4.2E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 SUPERFAMILY SSF51735 1 140 1.64E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 Pfam PF13549 ATP-grasp domain 478 690 2.0E-62 T 12-10-2018 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 Gene3D G3DSA:3.40.50.261 305 467 9.2E-26 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 Gene3D G3DSA:3.40.50.720 4 133 3.8E-37 T 12-10-2018 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 SUPERFAMILY SSF52210 307 457 1.09E-25 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 SUPERFAMILY SSF56059 480 693 1.11E-43 T 12-10-2018 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 Gene3D G3DSA:3.40.50.261 134 302 1.7E-42 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 161 298 1.1E-42 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 Gene3D G3DSA:3.30.1490.20 498 575 5.2E-75 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 SMART SM00881 9 104 9.2E-32 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 Gene3D G3DSA:3.30.470.20 479 691 5.2E-75 T 12-10-2018 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 Pfam PF13380 CoA binding domain 14 137 2.6E-18 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_0026 e82f92dcf45cb072e4ce6bb5bd9e8074 697 SUPERFAMILY SSF52210 158 297 5.36E-31 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_3750 fd0a7fc2c0677270986960a45d66b60c 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 5.1E-22 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3750 fd0a7fc2c0677270986960a45d66b60c 385 Gene3D G3DSA:1.20.140.10 237 381 6.8E-34 T 12-10-2018 Alide_3750 fd0a7fc2c0677270986960a45d66b60c 385 SUPERFAMILY SSF47203 228 379 7.41E-39 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3750 fd0a7fc2c0677270986960a45d66b60c 385 TIGRFAM TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase 8 378 1.2E-209 T 12-10-2018 IPR017620 Cyclohexanecarboxyl-CoA dehydrogenase Alide_3750 fd0a7fc2c0677270986960a45d66b60c 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 119 5.5E-22 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3750 fd0a7fc2c0677270986960a45d66b60c 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 375 5.8E-37 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3750 fd0a7fc2c0677270986960a45d66b60c 385 Gene3D G3DSA:1.10.540.10 4 121 3.0E-26 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3750 fd0a7fc2c0677270986960a45d66b60c 385 SUPERFAMILY SSF56645 4 241 1.57E-68 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3750 fd0a7fc2c0677270986960a45d66b60c 385 Gene3D G3DSA:2.40.110.10 122 236 1.3E-35 T 12-10-2018 Alide_3898 c3dd379e45df6db8ccd1f7936db177a1 413 Gene3D G3DSA:3.40.50.2300 62 369 2.7E-104 T 12-10-2018 Alide_3898 c3dd379e45df6db8ccd1f7936db177a1 413 SUPERFAMILY SSF53822 38 411 2.53E-87 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_3898 c3dd379e45df6db8ccd1f7936db177a1 413 Pfam PF13458 Periplasmic binding protein 38 377 9.3E-88 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_3898 c3dd379e45df6db8ccd1f7936db177a1 413 Gene3D G3DSA:3.40.50.2300 157 376 2.7E-104 T 12-10-2018 Alide_2770 80c98fe3361737ee02440f3465d99933 412 Gene3D G3DSA:2.30.40.10 24 406 4.0E-153 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Alide_2770 80c98fe3361737ee02440f3465d99933 412 Gene3D G3DSA:3.20.20.140 71 369 4.0E-153 T 12-10-2018 Alide_2770 80c98fe3361737ee02440f3465d99933 412 Hamap MF_00372 Imidazolonepropionase [hutI]. 8 409 41.403 T 12-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2770 80c98fe3361737ee02440f3465d99933 412 TIGRFAM TIGR01224 hutI: imidazolonepropionase 31 407 1.1E-138 T 12-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2770 80c98fe3361737ee02440f3465d99933 412 SUPERFAMILY SSF51338 8 409 2.44E-17 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Alide_2770 80c98fe3361737ee02440f3465d99933 412 SUPERFAMILY SSF51556 70 369 3.14E-90 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_2770 80c98fe3361737ee02440f3465d99933 412 Pfam PF01979 Amidohydrolase family 68 408 9.9E-18 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_4038 69cecf4adde98fe17fa5a7ff183dcfb9 620 Gene3D G3DSA:1.10.3210.40 31 250 7.3E-41 T 12-10-2018 Alide_4038 69cecf4adde98fe17fa5a7ff183dcfb9 620 SUPERFAMILY SSF46785 491 615 1.14E-41 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4038 69cecf4adde98fe17fa5a7ff183dcfb9 620 Gene3D G3DSA:1.10.10.10 494 564 1.3E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4038 69cecf4adde98fe17fa5a7ff183dcfb9 620 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 493 615 2.3E-46 T 12-10-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal Alide_4038 69cecf4adde98fe17fa5a7ff183dcfb9 620 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 26 243 9.0E-91 T 12-10-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class Alide_4038 69cecf4adde98fe17fa5a7ff183dcfb9 620 Gene3D G3DSA:2.40.10.200 510 611 1.3E-24 T 12-10-2018 Alide_4038 69cecf4adde98fe17fa5a7ff183dcfb9 620 Pfam PF07514 Putative helicase 27 340 5.6E-130 T 12-10-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative Alide_2152 d61d49cb789053015e6be553cbe8b251 221 Pfam PF02410 Ribosomal silencing factor during starvation 21 116 1.2E-22 T 12-10-2018 Alide_2152 d61d49cb789053015e6be553cbe8b251 221 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 11 117 21.39 T 12-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Alide_2152 d61d49cb789053015e6be553cbe8b251 221 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 20 116 7.6E-29 T 12-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Alide_2152 d61d49cb789053015e6be553cbe8b251 221 Gene3D G3DSA:3.30.460.10 13 126 4.9E-30 T 12-10-2018 Alide_2152 d61d49cb789053015e6be553cbe8b251 221 SUPERFAMILY SSF81301 15 121 1.05E-31 T 12-10-2018 Alide_3622 13ddfba21b44c56b4947044e10fc1f28 354 Gene3D G3DSA:3.40.50.300 1 252 1.2E-66 T 12-10-2018 Alide_3622 13ddfba21b44c56b4947044e10fc1f28 354 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3622 13ddfba21b44c56b4947044e10fc1f28 354 Pfam PF00005 ABC transporter 21 164 2.5E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3622 13ddfba21b44c56b4947044e10fc1f28 354 SUPERFAMILY SSF50331 259 352 8.5E-12 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_3622 13ddfba21b44c56b4947044e10fc1f28 354 SMART SM00382 29 214 2.0E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3622 13ddfba21b44c56b4947044e10fc1f28 354 Pfam PF08402 TOBE domain 282 351 8.7E-7 T 12-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Alide_3622 13ddfba21b44c56b4947044e10fc1f28 354 SUPERFAMILY SSF52540 3 239 8.12E-77 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 Gene3D G3DSA:3.30.410.40 150 470 7.7E-185 T 12-10-2018 Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 PIRSF PIRSF000137 1 530 2.5E-156 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 SUPERFAMILY SSF54373 289 473 4.41E-51 T 12-10-2018 Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 253 267 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 Gene3D G3DSA:3.50.50.60 4 527 7.7E-185 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 Gene3D G3DSA:4.10.450.10 37 195 7.7E-185 T 12-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 Pfam PF00732 GMC oxidoreductase 4 294 7.2E-94 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 Pfam PF05199 GMC oxidoreductase 387 523 1.6E-41 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 SUPERFAMILY SSF51905 3 529 4.05E-90 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0561 bdcf146f9c57ecea242deae3a490b403 530 Gene3D G3DSA:1.10.1220.110 96 149 7.7E-185 T 12-10-2018 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 Pfam PF00682 HMGL-like 6 275 3.0E-94 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 SUPERFAMILY SSF110921 396 502 8.24E-27 T 12-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 SUPERFAMILY SSF51569 3 293 2.56E-97 T 12-10-2018 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 Gene3D G3DSA:1.10.238.260 282 396 7.9E-35 T 12-10-2018 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 5 500 2.3E-211 T 12-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 13 29 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 Pfam PF08502 LeuA allosteric (dimerisation) domain 372 502 3.8E-35 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 3 512 41.954 T 12-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 Gene3D G3DSA:3.30.160.270 397 504 7.5E-14 T 12-10-2018 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 Gene3D G3DSA:3.20.20.70 2 278 8.9E-108 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 SMART SM00917 372 503 1.9E-40 T 12-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1771 f1aa9342a350154348c8e3af85c59807 513 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 200 213 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_1450 04d1ca24938eadcbc9eb358cc6fec5c3 337 Gene3D G3DSA:3.60.70.12 6 337 3.3E-111 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Alide_1450 04d1ca24938eadcbc9eb358cc6fec5c3 337 Pfam PF03576 Peptidase family S58 12 324 8.8E-61 T 12-10-2018 IPR005321 Peptidase S58, DmpA Alide_1450 04d1ca24938eadcbc9eb358cc6fec5c3 337 SUPERFAMILY SSF56266 7 320 5.36E-68 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Alide_4277 14eb3f93161fe4017f56cec039668f03 184 PIRSF PIRSF028688 1 182 1.3E-12 T 12-10-2018 IPR014549 Flagellar protein FlgO Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 Gene3D G3DSA:3.30.450.20 55 183 6.1E-7 T 12-10-2018 Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 SUPERFAMILY SSF55785 222 324 4.89E-10 T 12-10-2018 IPR035965 PAS domain superfamily Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 Gene3D G3DSA:3.30.70.270 321 479 1.6E-37 T 12-10-2018 Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 SMART SM00267 317 479 8.7E-33 T 12-10-2018 IPR000160 GGDEF domain Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 Pfam PF13188 PAS domain 11 99 0.1 T 12-10-2018 IPR000014 PAS domain Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 Pfam PF13188 PAS domain 169 269 2.6E-8 T 12-10-2018 IPR000014 PAS domain Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 SUPERFAMILY SSF55073 333 475 2.28E-32 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 324 475 1.2E-27 T 12-10-2018 IPR000160 GGDEF domain Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 Gene3D G3DSA:3.30.450.20 213 320 6.4E-8 T 12-10-2018 Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 SUPERFAMILY SSF55785 59 166 2.09E-7 T 12-10-2018 IPR035965 PAS domain superfamily Alide_1217 cab160b5f08c64a44ae7c2a58c8aaebd 487 Pfam PF00990 Diguanylate cyclase, GGDEF domain 329 474 1.3E-31 T 12-10-2018 IPR000160 GGDEF domain Alide_0382 438ddc870911da09b3101f1f238c6e0b 560 Gene3D G3DSA:3.50.50.60 6 556 3.6E-165 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0382 438ddc870911da09b3101f1f238c6e0b 560 SUPERFAMILY SSF51905 1 558 2.37E-76 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0382 438ddc870911da09b3101f1f238c6e0b 560 Pfam PF05199 GMC oxidoreductase 409 552 2.4E-32 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Alide_0382 438ddc870911da09b3101f1f238c6e0b 560 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 276 290 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_0382 438ddc870911da09b3101f1f238c6e0b 560 PIRSF PIRSF000137 1 560 2.1E-140 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_0382 438ddc870911da09b3101f1f238c6e0b 560 Gene3D G3DSA:3.30.560.10 44 490 3.6E-165 T 12-10-2018 Alide_0382 438ddc870911da09b3101f1f238c6e0b 560 Pfam PF00732 GMC oxidoreductase 6 317 7.2E-76 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_0382 438ddc870911da09b3101f1f238c6e0b 560 SUPERFAMILY SSF54373 312 495 1.18E-62 T 12-10-2018 Alide_0577 4b0ab339a774f49bbc41f46865df3edc 150 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 41 143 1.8E-31 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Alide_0577 4b0ab339a774f49bbc41f46865df3edc 150 Pfam PF02130 Uncharacterized protein family UPF0054 27 142 7.0E-30 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Alide_0577 4b0ab339a774f49bbc41f46865df3edc 150 Gene3D G3DSA:3.40.390.30 4 150 7.5E-42 T 12-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 Alide_0577 4b0ab339a774f49bbc41f46865df3edc 150 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 111 121 - T 12-10-2018 IPR020549 Endoribonuclease YbeY, conserved site Alide_0577 4b0ab339a774f49bbc41f46865df3edc 150 SUPERFAMILY SSF55486 26 148 7.81E-41 T 12-10-2018 Alide_0577 4b0ab339a774f49bbc41f46865df3edc 150 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 7 146 21.391 T 12-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Alide_3392 d2a57237bf5b5f5044a976a17150aac2 400 Gene3D G3DSA:1.20.1250.20 1 185 1.5E-21 T 12-10-2018 Alide_3392 d2a57237bf5b5f5044a976a17150aac2 400 Gene3D G3DSA:1.20.1250.20 200 391 2.2E-28 T 12-10-2018 Alide_3392 d2a57237bf5b5f5044a976a17150aac2 400 Pfam PF07690 Major Facilitator Superfamily 14 341 5.6E-35 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_3392 d2a57237bf5b5f5044a976a17150aac2 400 SUPERFAMILY SSF103473 2 389 3.66E-56 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_0312 5520ebd2c1ac8ee8eeacb3a44a57ceb5 388 SUPERFAMILY SSF89796 8 388 4.32E-124 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0312 5520ebd2c1ac8ee8eeacb3a44a57ceb5 388 Gene3D G3DSA:3.30.1540.10 239 332 7.2E-122 T 12-10-2018 Alide_0312 5520ebd2c1ac8ee8eeacb3a44a57ceb5 388 Pfam PF02515 CoA-transferase family III 14 379 2.6E-116 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0312 5520ebd2c1ac8ee8eeacb3a44a57ceb5 388 Gene3D G3DSA:3.40.50.10540 13 388 7.2E-122 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4266 cef53433349adb547049f1a809f05b4b 386 Pfam PF08442 ATP-grasp domain 2 201 5.4E-79 T 12-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_4266 cef53433349adb547049f1a809f05b4b 386 Gene3D G3DSA:3.30.1490.20 21 104 3.8E-96 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_4266 cef53433349adb547049f1a809f05b4b 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 12-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4266 cef53433349adb547049f1a809f05b4b 386 Pfam PF00549 CoA-ligase 262 381 1.0E-26 T 12-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4266 cef53433349adb547049f1a809f05b4b 386 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.534 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_4266 cef53433349adb547049f1a809f05b4b 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 2.1E-158 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_4266 cef53433349adb547049f1a809f05b4b 386 SUPERFAMILY SSF52210 239 385 1.83E-54 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4266 cef53433349adb547049f1a809f05b4b 386 PIRSF PIRSF001554 1 386 8.4E-153 T 12-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Alide_4266 cef53433349adb547049f1a809f05b4b 386 Gene3D G3DSA:3.40.50.261 240 386 9.2E-59 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_4266 cef53433349adb547049f1a809f05b4b 386 Gene3D G3DSA:3.30.470.20 1 234 3.8E-96 T 12-10-2018 Alide_4266 cef53433349adb547049f1a809f05b4b 386 SUPERFAMILY SSF56059 1 238 5.3E-83 T 12-10-2018 Alide_0925 6049cb0b866e0267af0b94ffd8ca03ca 349 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 230 242 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site Alide_0925 6049cb0b866e0267af0b94ffd8ca03ca 349 Pfam PF00348 Polyprenyl synthetase 59 292 1.4E-74 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 Alide_0925 6049cb0b866e0267af0b94ffd8ca03ca 349 SUPERFAMILY SSF48576 29 348 1.17E-96 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily Alide_0925 6049cb0b866e0267af0b94ffd8ca03ca 349 Gene3D G3DSA:1.10.600.10 22 349 1.1E-107 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily Alide_0925 6049cb0b866e0267af0b94ffd8ca03ca 349 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 108 122 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site Alide_0315 a8356e18eb2ac491b83c016a5009d665 452 Gene3D G3DSA:1.20.1250.20 1 202 4.5E-8 T 12-10-2018 Alide_0315 a8356e18eb2ac491b83c016a5009d665 452 SUPERFAMILY SSF103473 36 445 5.89E-29 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_0315 a8356e18eb2ac491b83c016a5009d665 452 Gene3D G3DSA:1.20.1250.20 256 451 6.8E-12 T 12-10-2018 Alide_0315 a8356e18eb2ac491b83c016a5009d665 452 Pfam PF07690 Major Facilitator Superfamily 60 402 2.5E-11 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_0364 212b3d7c1be277a20124b7f8a18f610e 237 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0364 212b3d7c1be277a20124b7f8a18f610e 237 SMART SM00382 28 214 1.8E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0364 212b3d7c1be277a20124b7f8a18f610e 237 Gene3D G3DSA:3.40.50.300 2 237 7.7E-61 T 12-10-2018 Alide_0364 212b3d7c1be277a20124b7f8a18f610e 237 Pfam PF00005 ABC transporter 19 164 7.3E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0364 212b3d7c1be277a20124b7f8a18f610e 237 SUPERFAMILY SSF52540 3 228 3.29E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3141 0f673bee73ebe1deda956f64eb617326 216 Gene3D G3DSA:3.20.19.10 1 184 3.8E-78 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Alide_3141 0f673bee73ebe1deda956f64eb617326 216 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 44.169 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 Alide_3141 0f673bee73ebe1deda956f64eb617326 216 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 8.6E-82 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 Alide_3141 0f673bee73ebe1deda956f64eb617326 216 Pfam PF00694 Aconitase C-terminal domain 1 132 6.4E-39 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Alide_3141 0f673bee73ebe1deda956f64eb617326 216 SUPERFAMILY SSF52016 1 201 9.61E-64 T 12-10-2018 Alide_0317 6340e70312c059d5fb725bb3a914d800 297 Pfam PF00892 EamA-like transporter family 8 136 1.7E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_0317 6340e70312c059d5fb725bb3a914d800 297 Pfam PF00892 EamA-like transporter family 152 285 4.0E-18 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_0317 6340e70312c059d5fb725bb3a914d800 297 SUPERFAMILY SSF103481 189 289 5.89E-12 T 12-10-2018 Alide_0317 6340e70312c059d5fb725bb3a914d800 297 SUPERFAMILY SSF103481 42 144 3.66E-7 T 12-10-2018 Alide_2808 d8942fe90c15e1361a4012ac7690536c 109 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 10 102 1.0E-30 T 12-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 Alide_2808 d8942fe90c15e1361a4012ac7690536c 109 SUPERFAMILY SSF63592 1 102 1.01E-30 T 12-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily Alide_2808 d8942fe90c15e1361a4012ac7690536c 109 Pfam PF05247 Flagellar transcriptional activator (FlhD) 1 106 3.7E-40 T 12-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 Alide_2808 d8942fe90c15e1361a4012ac7690536c 109 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 1 109 25.688 T 12-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 Alide_2808 d8942fe90c15e1361a4012ac7690536c 109 Gene3D G3DSA:1.10.4000.10 1 109 7.2E-39 T 12-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 Gene3D G3DSA:3.40.50.720 10 269 2.8E-100 T 12-10-2018 Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 156 173 - T 12-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 SUPERFAMILY SSF51735 9 272 3.36E-47 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 9 271 34.391 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 10 131 5.2E-39 T 12-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 134 270 5.6E-42 T 12-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 PIRSF PIRSF000161 8 273 4.9E-86 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 Gene3D G3DSA:3.30.360.10 133 240 2.8E-100 T 12-10-2018 Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 10 270 3.0E-94 T 12-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_4120 52ea0c3ad7b7011e5c0436d660ad1d93 273 SUPERFAMILY SSF55347 133 242 4.14E-37 T 12-10-2018 Alide_2472 d8cdf2efc82d0b48b5db975efad6ab44 659 Pfam PF00593 TonB dependent receptor 203 658 1.7E-36 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_2472 d8cdf2efc82d0b48b5db975efad6ab44 659 Gene3D G3DSA:2.170.130.10 51 163 4.2E-23 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_2472 d8cdf2efc82d0b48b5db975efad6ab44 659 SUPERFAMILY SSF56935 41 659 7.73E-92 T 12-10-2018 Alide_2472 d8cdf2efc82d0b48b5db975efad6ab44 659 Gene3D G3DSA:2.40.170.20 164 659 2.6E-60 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Alide_2472 d8cdf2efc82d0b48b5db975efad6ab44 659 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 154 1.4E-18 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_1253 f2ba21f8ad0bbd5af1a23cec3aac4ba9 149 Gene3D G3DSA:1.10.260.40 88 149 2.1E-25 T 12-10-2018 Alide_1253 f2ba21f8ad0bbd5af1a23cec3aac4ba9 149 Pfam PF02954 Bacterial regulatory protein, Fis family 93 122 4.4E-5 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_1253 f2ba21f8ad0bbd5af1a23cec3aac4ba9 149 Pfam PF10387 Protein of unknown function (DUF2442) 8 83 2.0E-10 T 12-10-2018 IPR018841 Protein of unknown function DUF2442 Alide_1253 f2ba21f8ad0bbd5af1a23cec3aac4ba9 149 Gene3D G3DSA:3.30.2020.10 4 87 2.7E-24 T 12-10-2018 IPR036782 NE0471-like, N-terminal Alide_1253 f2ba21f8ad0bbd5af1a23cec3aac4ba9 149 SUPERFAMILY SSF47413 92 144 1.23E-19 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_1253 f2ba21f8ad0bbd5af1a23cec3aac4ba9 149 SUPERFAMILY SSF143880 5 87 1.44E-16 T 12-10-2018 IPR036782 NE0471-like, N-terminal Alide_3023 7560a0a698550265e97902a82ab54774 321 Pfam PF02239 Cytochrome D1 heme domain 191 298 1.5E-7 T 12-10-2018 Alide_3023 7560a0a698550265e97902a82ab54774 321 Gene3D G3DSA:2.130.10.10 227 315 9.4E-19 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Alide_3023 7560a0a698550265e97902a82ab54774 321 Gene3D G3DSA:2.130.10.10 16 197 3.1E-33 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Alide_3023 7560a0a698550265e97902a82ab54774 321 SUPERFAMILY SSF50974 10 315 8.11E-74 T 12-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 653 672 1.8E-36 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 175 189 1.8E-36 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 677 689 1.8E-36 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 342 356 1.8E-36 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 551 562 1.8E-36 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 573 583 1.8E-36 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 SUPERFAMILY SSF81660 349 555 1.13E-45 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 Pfam PF00122 E1-E2 ATPase 125 322 7.5E-45 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 344 350 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 SUPERFAMILY SSF56784 340 769 1.08E-56 T 12-10-2018 IPR036412 HAD-like superfamily Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 Gene3D G3DSA:3.40.50.1000 339 698 0.0 T 12-10-2018 IPR023214 HAD superfamily Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 SUPERFAMILY SSF81653 130 236 6.02E-26 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 Gene3D G3DSA:3.40.1110.10 352 558 0.0 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 Gene3D G3DSA:1.20.1110.10 61 923 0.0 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 623 732 2.3E-31 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 96 363 3.5E-36 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 Gene3D G3DSA:2.70.150.10 22 240 0.0 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 SMART SM00831 9 83 2.4E-25 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 Pfam PF00702 haloacid dehalogenase-like hydrolase 340 667 6.6E-23 T 12-10-2018 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 Pfam PF00690 Cation transporter/ATPase, N-terminus 12 77 7.0E-19 T 12-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 SUPERFAMILY SSF81665 11 928 3.79E-121 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 Pfam PF00689 Cation transporting ATPase, C-terminus 749 924 1.8E-48 T 12-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 625 641 6.2E-17 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 653 669 6.2E-17 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 685 710 6.2E-17 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2695 a1a8243d5491dd7b62a80af859b31a83 934 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 509 527 6.2E-17 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 PIRSF PIRSF015589 18 719 2.2E-234 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 SUPERFAMILY SSF140356 40 136 1.7E-26 T 12-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 Gene3D G3DSA:3.30.870.10 534 711 1.8E-54 T 12-10-2018 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 Pfam PF02503 Polyphosphate kinase middle domain 150 351 4.8E-57 T 12-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 Hamap MF_00347 Polyphosphate kinase [ppk]. 36 711 25.711 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 SUPERFAMILY SSF56024 344 524 3.45E-55 T 12-10-2018 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 Pfam PF13090 Polyphosphate kinase C-terminal domain 360 705 1.7E-138 T 12-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 SUPERFAMILY SSF143724 138 342 4.12E-59 T 12-10-2018 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 Gene3D G3DSA:3.30.1840.10 34 340 1.5E-85 T 12-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 SUPERFAMILY SSF56024 530 707 1.26E-58 T 12-10-2018 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 Pfam PF13089 Polyphosphate kinase N-terminal domain 41 141 2.9E-26 T 12-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 40 706 5.8E-257 T 12-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Alide_2493 6163a3df4bb0f94704b8f9430e14271e 724 Gene3D G3DSA:3.30.870.10 347 530 2.7E-67 T 12-10-2018 Alide_2821 7039c749e4067f3d0c101a5e40d34944 294 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 6 270 4.3E-113 T 12-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 Alide_2821 7039c749e4067f3d0c101a5e40d34944 294 Pfam PF00483 Nucleotidyl transferase 13 273 3.0E-27 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Alide_2821 7039c749e4067f3d0c101a5e40d34944 294 SUPERFAMILY SSF53448 7 282 1.82E-64 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_2821 7039c749e4067f3d0c101a5e40d34944 294 Gene3D G3DSA:3.90.550.10 1 293 4.6E-89 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_2157 6c354a8b3b4259cde35e3e0aca9fab8d 406 PIRSF PIRSF037420 13 393 1.6E-129 T 12-10-2018 IPR017200 Coenzyme PQQ synthesis protein E Alide_2157 6c354a8b3b4259cde35e3e0aca9fab8d 406 Gene3D G3DSA:3.20.20.70 31 244 6.7E-46 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2157 6c354a8b3b4259cde35e3e0aca9fab8d 406 SUPERFAMILY SSF102114 29 355 6.93E-67 T 12-10-2018 Alide_2157 6c354a8b3b4259cde35e3e0aca9fab8d 406 Pfam PF13353 4Fe-4S single cluster domain 34 121 3.1E-7 T 12-10-2018 Alide_2157 6c354a8b3b4259cde35e3e0aca9fab8d 406 Pfam PF04055 Radical SAM superfamily 37 179 1.1E-20 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_2157 6c354a8b3b4259cde35e3e0aca9fab8d 406 TIGRFAM TIGR04051 rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ 30 383 8.6E-187 T 12-10-2018 IPR023992 Heme D1 biosynthesis, radical SAM protein NirJ Alide_2165 6041496b6b8b7a8b38b564bd7d43f841 561 SMART SM00267 380 554 3.6E-69 T 12-10-2018 IPR000160 GGDEF domain Alide_2165 6041496b6b8b7a8b38b564bd7d43f841 561 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 387 553 5.9E-56 T 12-10-2018 IPR000160 GGDEF domain Alide_2165 6041496b6b8b7a8b38b564bd7d43f841 561 Pfam PF00990 Diguanylate cyclase, GGDEF domain 392 549 2.7E-49 T 12-10-2018 IPR000160 GGDEF domain Alide_2165 6041496b6b8b7a8b38b564bd7d43f841 561 SUPERFAMILY SSF55073 396 552 2.04E-49 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_2165 6041496b6b8b7a8b38b564bd7d43f841 561 Gene3D G3DSA:3.30.70.270 377 554 1.1E-61 T 12-10-2018 Alide_0155 9f54dcc84707206534126f51088624f8 261 Gene3D G3DSA:3.30.450.40 78 253 6.8E-45 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0155 9f54dcc84707206534126f51088624f8 261 SUPERFAMILY SSF46785 10 80 1.36E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0155 9f54dcc84707206534126f51088624f8 261 Gene3D G3DSA:1.10.10.10 2 76 2.3E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0155 9f54dcc84707206534126f51088624f8 261 SUPERFAMILY SSF55781 75 250 2.16E-42 T 12-10-2018 Alide_0155 9f54dcc84707206534126f51088624f8 261 SMART SM00346 10 98 3.0E-13 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0155 9f54dcc84707206534126f51088624f8 261 Pfam PF01614 Bacterial transcriptional regulator 129 250 2.6E-28 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_0155 9f54dcc84707206534126f51088624f8 261 Pfam PF09339 IclR helix-turn-helix domain 14 57 3.7E-8 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0214 32005ca2973067adad924e4891ba90c9 811 Gene3D G3DSA:3.40.50.300 560 758 3.9E-25 T 12-10-2018 Alide_0214 32005ca2973067adad924e4891ba90c9 811 Gene3D G3DSA:3.40.50.300 417 500 1.7E-6 T 12-10-2018 Alide_0214 32005ca2973067adad924e4891ba90c9 811 SUPERFAMILY SSF52540 400 724 7.04E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0214 32005ca2973067adad924e4891ba90c9 811 SMART SM00382 440 704 3.2E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0214 32005ca2973067adad924e4891ba90c9 811 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 182 388 1.1E-13 T 12-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 Alide_0218 4a3c5f97b1dbddb18b0c6c8f82a33670 148 SUPERFAMILY SSF47598 4 42 3.5E-6 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Alide_0637 d36c4894cdc1f02e834244a25326a72c 144 Gene3D G3DSA:3.40.250.10 16 144 3.1E-28 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_0637 d36c4894cdc1f02e834244a25326a72c 144 Pfam PF00581 Rhodanese-like domain 25 119 6.0E-6 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_0637 d36c4894cdc1f02e834244a25326a72c 144 SUPERFAMILY SSF52821 19 120 1.78E-19 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_0637 d36c4894cdc1f02e834244a25326a72c 144 SMART SM00450 22 127 2.2E-9 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_4063 2f18ee8f4661f0a41c0451732371110d 580 Pfam PF12551 Poly-beta-hydroxybutyrate polymerase N terminal 11 51 1.9E-14 T 12-10-2018 IPR022211 Poly-beta-hydroxybutyrate polymerase N-terminal Alide_4063 2f18ee8f4661f0a41c0451732371110d 580 SUPERFAMILY SSF53474 205 513 3.48E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4063 2f18ee8f4661f0a41c0451732371110d 580 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 91 260 1.3E-56 T 12-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 Alide_4063 2f18ee8f4661f0a41c0451732371110d 580 Gene3D G3DSA:3.40.50.1820 233 512 3.2E-11 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1793 d59d51b3d8de3ec6479b9375ea0a8c43 207 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 41 186 2.7E-25 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 Alide_1793 d59d51b3d8de3ec6479b9375ea0a8c43 207 Gene3D G3DSA:3.40.50.620 1 207 2.6E-36 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1793 d59d51b3d8de3ec6479b9375ea0a8c43 207 SUPERFAMILY SSF52402 15 189 2.55E-38 T 12-10-2018 Alide_3024 ecc331d280d02104aeea283651505eb7 245 Gene3D G3DSA:3.30.70.1560 142 223 6.0E-49 T 12-10-2018 Alide_3024 ecc331d280d02104aeea283651505eb7 245 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 72 236 4.5E-39 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Alide_3024 ecc331d280d02104aeea283651505eb7 245 Pfam PF00849 RNA pseudouridylate synthase 68 206 2.5E-15 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3024 ecc331d280d02104aeea283651505eb7 245 SUPERFAMILY SSF55120 67 241 9.12E-40 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_3024 ecc331d280d02104aeea283651505eb7 245 SUPERFAMILY SSF55174 1 95 1.26E-5 T 12-10-2018 Alide_3024 ecc331d280d02104aeea283651505eb7 245 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 113 127 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Alide_3024 ecc331d280d02104aeea283651505eb7 245 Gene3D G3DSA:3.30.70.580 68 240 6.0E-49 T 12-10-2018 Alide_0690 efb9446b385fe1b26ad94d8eac73c62d 343 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 37 322 1.3E-76 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Alide_0690 efb9446b385fe1b26ad94d8eac73c62d 343 PIRSF PIRSF006470 1 340 2.9E-86 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Alide_0690 efb9446b385fe1b26ad94d8eac73c62d 343 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 43 280 2.6E-62 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Alide_0690 efb9446b385fe1b26ad94d8eac73c62d 343 SUPERFAMILY SSF53850 72 260 1.92E-8 T 12-10-2018 Alide_0690 efb9446b385fe1b26ad94d8eac73c62d 343 Gene3D G3DSA:3.40.190.170 28 341 7.7E-129 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Alide_1736 a83cc341b013a0ea78a54d2f835d3239 225 SUPERFAMILY SSF89562 17 186 1.44E-31 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_1736 a83cc341b013a0ea78a54d2f835d3239 225 Pfam PF03737 Aldolase/RraA 21 174 2.3E-29 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_1736 a83cc341b013a0ea78a54d2f835d3239 225 Gene3D G3DSA:3.50.30.100 2 197 2.5E-41 T 12-10-2018 Alide_1306 254534a188f56f15a2d315b38b3e6fc7 239 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 25 204 1.2E-31 T 12-10-2018 Alide_1306 254534a188f56f15a2d315b38b3e6fc7 239 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 21 238 4.4E-64 T 12-10-2018 Alide_1306 254534a188f56f15a2d315b38b3e6fc7 239 Pfam PF12710 haloacid dehalogenase-like hydrolase 26 203 2.6E-20 T 12-10-2018 Alide_1306 254534a188f56f15a2d315b38b3e6fc7 239 SUPERFAMILY SSF56784 19 235 1.29E-48 T 12-10-2018 IPR036412 HAD-like superfamily Alide_1306 254534a188f56f15a2d315b38b3e6fc7 239 Gene3D G3DSA:3.40.50.1000 2 239 3.6E-73 T 12-10-2018 IPR023214 HAD superfamily Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 SUPERFAMILY SSF54909 72 152 3.08E-11 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 Pfam PF01037 Lrp/AsnC ligand binding domain 77 149 4.1E-11 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 SMART SM00344 8 120 1.7E-22 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 Pfam PF13404 AsnC-type helix-turn-helix domain 8 48 2.4E-16 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 Gene3D G3DSA:1.10.10.10 8 59 9.2E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 Gene3D G3DSA:3.30.70.920 66 148 4.9E-15 T 12-10-2018 Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 SUPERFAMILY SSF46785 8 65 1.25E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 6.3E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 6.3E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_0720 ce4bb7767f01f4db3fb99d00870386b0 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 6.3E-9 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_2692 63a675050e5c0dca69ea44d839c595d6 110 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 3 108 1.2E-37 T 12-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 Alide_2692 63a675050e5c0dca69ea44d839c595d6 110 SUPERFAMILY SSF103481 10 108 2.35E-7 T 12-10-2018 Alide_2692 63a675050e5c0dca69ea44d839c595d6 110 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 4 108 22.917 T 12-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 Alide_0316 7c1f8e6e4f54351d23ebb37cb53ac519 221 SMART SM00342 134 216 1.2E-11 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_0316 7c1f8e6e4f54351d23ebb37cb53ac519 221 Pfam PF12833 Helix-turn-helix domain 140 213 4.6E-12 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_0316 7c1f8e6e4f54351d23ebb37cb53ac519 221 Gene3D G3DSA:2.60.120.10 11 83 9.8E-10 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_0316 7c1f8e6e4f54351d23ebb37cb53ac519 221 Pfam PF07883 Cupin domain 17 66 1.9E-7 T 12-10-2018 IPR013096 Cupin 2, conserved barrel Alide_0316 7c1f8e6e4f54351d23ebb37cb53ac519 221 Gene3D G3DSA:1.10.10.60 120 219 9.8E-14 T 12-10-2018 Alide_0316 7c1f8e6e4f54351d23ebb37cb53ac519 221 SUPERFAMILY SSF51182 19 114 3.9E-12 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_0491 b35996535ac6b172bf37d082d6a4024c 378 SUPERFAMILY SSF52540 7 344 9.54E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0491 b35996535ac6b172bf37d082d6a4024c 378 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 200 214 - T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0491 b35996535ac6b172bf37d082d6a4024c 378 Pfam PF00437 Type II/IV secretion system protein 126 276 1.8E-36 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0491 b35996535ac6b172bf37d082d6a4024c 378 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 10 350 1.2E-136 T 12-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 Alide_0491 b35996535ac6b172bf37d082d6a4024c 378 Gene3D G3DSA:3.40.50.300 109 364 3.5E-88 T 12-10-2018 Alide_0491 b35996535ac6b172bf37d082d6a4024c 378 Gene3D G3DSA:3.30.450.90 2 106 1.9E-29 T 12-10-2018 Alide_3805 249390e85f18d581f024cf5773bdcac9 399 Gene3D G3DSA:3.40.50.2300 30 351 3.5E-76 T 12-10-2018 Alide_3805 249390e85f18d581f024cf5773bdcac9 399 Pfam PF13458 Periplasmic binding protein 29 378 9.3E-63 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_3805 249390e85f18d581f024cf5773bdcac9 399 Gene3D G3DSA:3.40.50.2300 153 281 3.5E-76 T 12-10-2018 Alide_3805 249390e85f18d581f024cf5773bdcac9 399 SUPERFAMILY SSF53822 29 383 2.59E-76 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_3188 07656cfcbb191f038e54f4a9c142fdbe 60 Pfam PF01783 Ribosomal L32p protein family 2 55 1.2E-19 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3188 07656cfcbb191f038e54f4a9c142fdbe 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 16.956 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3188 07656cfcbb191f038e54f4a9c142fdbe 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 5.7E-21 T 12-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3188 07656cfcbb191f038e54f4a9c142fdbe 60 SUPERFAMILY SSF57829 2 55 1.77E-17 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Alide_1603 f40649135423a84da507faa779b7b49e 330 PIRSF PIRSF017082 4 330 7.9E-61 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1603 f40649135423a84da507faa779b7b49e 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 325 2.9E-64 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1603 f40649135423a84da507faa779b7b49e 330 Gene3D G3DSA:3.40.190.10 132 255 3.4E-88 T 12-10-2018 Alide_1603 f40649135423a84da507faa779b7b49e 330 Gene3D G3DSA:3.40.190.150 35 319 3.4E-88 T 12-10-2018 Alide_3503 e9c6eda677193af81f474dae7593b6a6 477 Pfam PF03972 MmgE/PrpD family 12 429 1.8E-98 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_3503 e9c6eda677193af81f474dae7593b6a6 477 Gene3D G3DSA:1.10.4100.10 34 426 5.1E-117 T 12-10-2018 Alide_3503 e9c6eda677193af81f474dae7593b6a6 477 SUPERFAMILY SSF103378 8 457 2.88E-97 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_3503 e9c6eda677193af81f474dae7593b6a6 477 Gene3D G3DSA:3.30.1330.120 281 408 5.1E-117 T 12-10-2018 Alide_1944 e0a91bd927e9b64408c315ec0a06844e 292 Gene3D G3DSA:3.40.50.150 28 254 3.8E-24 T 12-10-2018 Alide_1944 e0a91bd927e9b64408c315ec0a06844e 292 SUPERFAMILY SSF53335 31 262 1.01E-36 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_1944 e0a91bd927e9b64408c315ec0a06844e 292 Pfam PF04072 Leucine carboxyl methyltransferase 81 200 8.8E-10 T 12-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 Alide_0297 575590318cf6e6f47309af197126a59f 312 Gene3D G3DSA:3.20.10.10 138 301 5.8E-53 T 12-10-2018 Alide_0297 575590318cf6e6f47309af197126a59f 312 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 16 312 4.1E-136 T 12-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 Alide_0297 575590318cf6e6f47309af197126a59f 312 ProSitePatterns PS00770 Aminotransferases class-IV signature. 199 228 - T 12-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 Alide_0297 575590318cf6e6f47309af197126a59f 312 SUPERFAMILY SSF56752 8 309 2.62E-104 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 Alide_0297 575590318cf6e6f47309af197126a59f 312 Pfam PF01063 Amino-transferase class IV 41 272 2.6E-57 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 Alide_0297 575590318cf6e6f47309af197126a59f 312 Gene3D G3DSA:3.30.470.10 12 137 3.0E-42 T 12-10-2018 Alide_1380 bb2615c4759e870ecd8ca1b60722a34e 332 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.7E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1380 bb2615c4759e870ecd8ca1b60722a34e 332 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.7E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1380 bb2615c4759e870ecd8ca1b60722a34e 332 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.7E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1380 bb2615c4759e870ecd8ca1b60722a34e 332 SUPERFAMILY SSF46785 1 87 1.69E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1380 bb2615c4759e870ecd8ca1b60722a34e 332 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 7.4E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1380 bb2615c4759e870ecd8ca1b60722a34e 332 Pfam PF03466 LysR substrate binding domain 87 291 1.9E-26 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1380 bb2615c4759e870ecd8ca1b60722a34e 332 Gene3D G3DSA:3.40.190.290 93 295 8.8E-24 T 12-10-2018 Alide_1380 bb2615c4759e870ecd8ca1b60722a34e 332 Gene3D G3DSA:1.10.10.10 1 92 1.4E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1380 bb2615c4759e870ecd8ca1b60722a34e 332 SUPERFAMILY SSF53850 87 295 5.79E-24 T 12-10-2018 Alide_3515 e3d7a5a6125e8694466dd46b0e6feb18 267 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 18 264 1.7E-101 T 12-10-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 Alide_3515 e3d7a5a6125e8694466dd46b0e6feb18 267 SUPERFAMILY SSF55781 86 264 3.92E-52 T 12-10-2018 Alide_3515 e3d7a5a6125e8694466dd46b0e6feb18 267 Gene3D G3DSA:3.30.450.40 88 267 4.9E-58 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_3515 e3d7a5a6125e8694466dd46b0e6feb18 267 SUPERFAMILY SSF46785 21 93 1.07E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3515 e3d7a5a6125e8694466dd46b0e6feb18 267 SMART SM00346 21 109 7.6E-26 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_3515 e3d7a5a6125e8694466dd46b0e6feb18 267 Pfam PF09339 IclR helix-turn-helix domain 25 74 3.9E-13 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_3515 e3d7a5a6125e8694466dd46b0e6feb18 267 Pfam PF01614 Bacterial transcriptional regulator 137 262 3.2E-36 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_3515 e3d7a5a6125e8694466dd46b0e6feb18 267 Gene3D G3DSA:1.10.10.10 11 87 2.9E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.9E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.9E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.9E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 Gene3D G3DSA:1.10.10.10 5 94 1.0E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 Pfam PF03466 LysR substrate binding domain 91 296 1.2E-36 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 Gene3D G3DSA:3.40.190.10 95 295 4.7E-72 T 12-10-2018 Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 57 2.0E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 SUPERFAMILY SSF53850 93 297 3.74E-36 T 12-10-2018 Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 SUPERFAMILY SSF46785 5 116 3.57E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1897 09a7f208dd7d4cac0b8ccc7e403c98fa 308 Gene3D G3DSA:3.40.190.10 168 272 4.7E-72 T 12-10-2018 Alide_0342 1806a487c3771282dada89610fabd586 63 Gene3D G3DSA:3.30.429.10 2 63 3.5E-26 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily Alide_0342 1806a487c3771282dada89610fabd586 63 Pfam PF01361 Tautomerase enzyme 2 60 1.7E-24 T 12-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 Alide_0342 1806a487c3771282dada89610fabd586 63 SUPERFAMILY SSF55331 2 61 5.24E-21 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily Alide_0342 1806a487c3771282dada89610fabd586 63 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 61 6.5E-24 T 12-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 1.2E-34 T 12-10-2018 IPR027486 Ribosomal protein S10 domain Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 2.8E-17 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 2.8E-17 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 2.8E-17 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 SMART SM01403 7 101 7.2E-54 T 12-10-2018 IPR027486 Ribosomal protein S10 domain Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 Gene3D G3DSA:3.30.70.600 1 102 6.0E-36 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 12-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 5.5E-45 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 SUPERFAMILY SSF54999 5 102 7.46E-37 T 12-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Alide_0410 d3de122db76cc4cc5d9d372ca95583e6 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.264 T 12-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0186 de04b5114228d1b0e68e38c2714bb36a 328 PIRSF PIRSF017082 1 324 2.1E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0186 de04b5114228d1b0e68e38c2714bb36a 328 Gene3D G3DSA:3.40.190.10 129 250 5.0E-92 T 12-10-2018 Alide_0186 de04b5114228d1b0e68e38c2714bb36a 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 321 7.2E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0186 de04b5114228d1b0e68e38c2714bb36a 328 SUPERFAMILY SSF53850 117 288 3.86E-9 T 12-10-2018 Alide_0186 de04b5114228d1b0e68e38c2714bb36a 328 Gene3D G3DSA:3.40.190.150 33 312 5.0E-92 T 12-10-2018 Alide_4165 bed0f1abd0bdd42f13c5f5a4ffcb6bcd 133 Gene3D G3DSA:1.10.12.20 6 59 2.3E-5 T 12-10-2018 Alide_4165 bed0f1abd0bdd42f13c5f5a4ffcb6bcd 133 SUPERFAMILY SSF50249 12 120 1.22E-31 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_4165 bed0f1abd0bdd42f13c5f5a4ffcb6bcd 133 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 57 113 1.4E-15 T 12-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Alide_4165 bed0f1abd0bdd42f13c5f5a4ffcb6bcd 133 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 21 56 2.5E-14 T 12-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 SUPERFAMILY SSF47781 450 630 4.45E-61 T 12-10-2018 IPR010994 RuvA domain 2-like Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 SUPERFAMILY SSF56091 20 362 2.7E-107 T 12-10-2018 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Gene3D G3DSA:1.10.150.20 552 628 8.3E-31 T 12-10-2018 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 SMART SM00278 492 511 27.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 SMART SM00278 590 609 19.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 SMART SM00278 526 545 150.0 T 12-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Pfam PF12826 Helix-hairpin-helix motif 556 619 1.4E-26 T 12-10-2018 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Gene3D G3DSA:1.10.150.20 478 551 1.7E-27 T 12-10-2018 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Gene3D G3DSA:3.40.50.10190 629 714 1.0E-28 T 12-10-2018 IPR036420 BRCT domain superfamily Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Gene3D G3DSA:3.30.470.90 84 363 4.6E-91 T 12-10-2018 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 26 708 8.0E-239 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Gene3D G3DSA:2.40.50.140 364 436 2.7E-31 T 12-10-2018 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 21 182 1.3E-53 T 12-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 210 364 7.1E-56 T 12-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Gene3D G3DSA:2.20.70.80 439 477 4.6E-12 T 12-10-2018 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 135 164 - T 12-10-2018 IPR018239 NAD-dependent DNA ligase, active site Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 377 392 - T 12-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Gene3D G3DSA:1.10.287.610 10 82 5.8E-25 T 12-10-2018 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 PIRSF PIRSF001604 13 717 8.7E-229 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 453 480 7.6E-9 T 12-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Hamap MF_01588 DNA ligase [ligA]. 17 713 52.985 T 12-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 SMART SM00292 639 716 2.1E-15 T 12-10-2018 IPR001357 BRCT domain Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 368 442 1.2E-31 T 12-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 SUPERFAMILY SSF52113 640 713 1.31E-19 T 12-10-2018 IPR036420 BRCT domain superfamily Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 SMART SM00532 18 494 2.2E-226 T 12-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 640 713 3.2E-14 T 12-10-2018 IPR001357 BRCT domain Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 Pfam PF14520 Helix-hairpin-helix domain 494 548 3.1E-5 T 12-10-2018 Alide_2252 5f77665e7d2a7125af1dc01c34ba4ab1 717 SUPERFAMILY SSF50249 364 442 1.88E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0083 4035b06947788ca0197e88edda769131 268 SUPERFAMILY SSF51735 10 264 3.03E-75 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0083 4035b06947788ca0197e88edda769131 268 Gene3D G3DSA:3.40.50.720 1 266 7.0E-78 T 12-10-2018 Alide_0083 4035b06947788ca0197e88edda769131 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 29 263 2.5E-61 T 12-10-2018 Alide_0083 4035b06947788ca0197e88edda769131 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 1.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0083 4035b06947788ca0197e88edda769131 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 1.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0083 4035b06947788ca0197e88edda769131 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 1.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0083 4035b06947788ca0197e88edda769131 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 227 247 1.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0083 4035b06947788ca0197e88edda769131 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 1.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0083 4035b06947788ca0197e88edda769131 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 1.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0083 4035b06947788ca0197e88edda769131 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0083 4035b06947788ca0197e88edda769131 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 1.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0083 4035b06947788ca0197e88edda769131 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.3E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0746 f5657adde1690fe07803721d15351b54 380 Pfam PF00534 Glycosyl transferases group 1 197 355 1.5E-30 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 Alide_0746 f5657adde1690fe07803721d15351b54 380 TIGRFAM TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated 7 376 4.7E-151 T 12-10-2018 IPR017522 Sugar transferase, PEP-CTERM, Stp2 Alide_0746 f5657adde1690fe07803721d15351b54 380 Gene3D G3DSA:3.40.50.2000 174 361 5.9E-64 T 12-10-2018 Alide_0746 f5657adde1690fe07803721d15351b54 380 SUPERFAMILY SSF53756 8 375 8.24E-75 T 12-10-2018 Alide_0746 f5657adde1690fe07803721d15351b54 380 Gene3D G3DSA:3.40.50.2000 18 372 5.9E-64 T 12-10-2018 Alide_0746 f5657adde1690fe07803721d15351b54 380 Pfam PF13439 Glycosyltransferase Family 4 18 177 6.9E-19 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Alide_1746 317ed8ffd6fb03baaae0d6ea233025fb 477 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_1746 317ed8ffd6fb03baaae0d6ea233025fb 477 Gene3D G3DSA:3.40.309.10 249 441 2.7E-171 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_1746 317ed8ffd6fb03baaae0d6ea233025fb 477 Pfam PF00171 Aldehyde dehydrogenase family 13 472 1.4E-155 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_1746 317ed8ffd6fb03baaae0d6ea233025fb 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_1746 317ed8ffd6fb03baaae0d6ea233025fb 477 SUPERFAMILY SSF53720 4 476 2.62E-151 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_1746 317ed8ffd6fb03baaae0d6ea233025fb 477 Gene3D G3DSA:3.40.605.10 21 467 2.7E-171 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_2764 a7a57fde2ee7793328c1ab7a4b0f0864 489 Gene3D G3DSA:3.40.309.10 264 454 7.1E-180 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_2764 a7a57fde2ee7793328c1ab7a4b0f0864 489 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 31 481 1.8E-201 T 12-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 Alide_2764 a7a57fde2ee7793328c1ab7a4b0f0864 489 SUPERFAMILY SSF53720 10 485 1.09E-168 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_2764 a7a57fde2ee7793328c1ab7a4b0f0864 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 286 297 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_2764 a7a57fde2ee7793328c1ab7a4b0f0864 489 Pfam PF00171 Aldehyde dehydrogenase family 21 483 8.0E-169 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_2764 a7a57fde2ee7793328c1ab7a4b0f0864 489 Gene3D G3DSA:3.40.605.10 29 478 7.1E-180 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_2764 a7a57fde2ee7793328c1ab7a4b0f0864 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 258 265 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_3798 3b9d27513eb2925bec6a06e5b13ce749 239 Pfam PF13548 Domain of unknown function (DUF4126) 44 214 1.6E-47 T 12-10-2018 IPR025196 Domain of unknown function DUF4126 Alide_0475 986a49a0bbf605a10d1dd9e2a119c71e 259 Pfam PF06114 IrrE N-terminal-like domain 21 141 1.0E-19 T 12-10-2018 IPR010359 IrrE N-terminal-like domain Alide_0707 dd61ae1315f121ebf9b3e3dce993141f 598 Gene3D G3DSA:1.10.510.10 123 301 1.4E-47 T 12-10-2018 Alide_0707 dd61ae1315f121ebf9b3e3dce993141f 598 Pfam PF00069 Protein kinase domain 23 293 5.6E-27 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Alide_0707 dd61ae1315f121ebf9b3e3dce993141f 598 Gene3D G3DSA:3.30.200.20 8 122 1.4E-47 T 12-10-2018 Alide_0707 dd61ae1315f121ebf9b3e3dce993141f 598 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 28 51 - T 12-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 Alide_0707 dd61ae1315f121ebf9b3e3dce993141f 598 SUPERFAMILY SSF56112 18 301 1.48E-45 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_4232 10bff9a9d2ab73ce1e5f5583df98450f 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 24 104 1.9E-27 T 12-10-2018 IPR003849 Preprotein translocase YajC Alide_4232 10bff9a9d2ab73ce1e5f5583df98450f 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 44 62 3.0E-14 T 12-10-2018 IPR003849 Preprotein translocase YajC Alide_4232 10bff9a9d2ab73ce1e5f5583df98450f 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 24 44 3.0E-14 T 12-10-2018 IPR003849 Preprotein translocase YajC Alide_4232 10bff9a9d2ab73ce1e5f5583df98450f 110 SMART SM01323 22 104 8.3E-44 T 12-10-2018 IPR003849 Preprotein translocase YajC Alide_4232 10bff9a9d2ab73ce1e5f5583df98450f 110 Pfam PF02699 Preprotein translocase subunit 27 102 1.3E-29 T 12-10-2018 IPR003849 Preprotein translocase YajC Alide_2035 4406580b57babd648dc69804b996981b 278 SUPERFAMILY SSF53213 15 271 3.92E-84 T 12-10-2018 Alide_2035 4406580b57babd648dc69804b996981b 278 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 17 271 6.2E-40 T 12-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 Alide_2035 4406580b57babd648dc69804b996981b 278 Gene3D G3DSA:3.40.830.10 7 273 1.9E-85 T 12-10-2018 Alide_2035 4406580b57babd648dc69804b996981b 278 PIRSF PIRSF006157 12 274 8.5E-80 T 12-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 331 485 6.4E-52 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 Pfam PF00672 HAMP domain 222 265 1.3E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 Gene3D G3DSA:1.10.287.950 217 520 1.6E-86 T 12-10-2018 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 SMART SM00283 271 518 2.4E-87 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 369 396 6.1E-51 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 292 321 6.1E-51 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 446 475 6.1E-51 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 193 213 6.1E-51 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 427 6.1E-51 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 SUPERFAMILY SSF58104 238 519 3.79E-71 T 12-10-2018 Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 Pfam PF12729 Four helix bundle sensory module for signal transduction 10 178 1.6E-8 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Alide_0038 bc56ebf3a2224908b863c0f1694da4b3 549 SMART SM00304 218 270 1.4E-8 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_0490 d12ac98ec80618c048aeae79c4eddb05 310 Gene3D G3DSA:3.40.50.720 15 183 4.7E-50 T 12-10-2018 Alide_0490 d12ac98ec80618c048aeae79c4eddb05 310 PIRSF PIRSF000103 12 308 8.7E-67 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_0490 d12ac98ec80618c048aeae79c4eddb05 310 SUPERFAMILY SSF51735 18 183 4.07E-48 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0490 d12ac98ec80618c048aeae79c4eddb05 310 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 19 179 1.4E-44 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Alide_0490 d12ac98ec80618c048aeae79c4eddb05 310 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 21 34 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_0490 d12ac98ec80618c048aeae79c4eddb05 310 Gene3D G3DSA:1.10.1040.10 184 306 1.7E-37 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_0490 d12ac98ec80618c048aeae79c4eddb05 310 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 185 303 1.4E-32 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Alide_0490 d12ac98ec80618c048aeae79c4eddb05 310 SUPERFAMILY SSF48179 183 305 5.21E-38 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_0686 749391034c53b238c3e9b3729735af32 331 SUPERFAMILY SSF53850 116 288 6.32E-11 T 12-10-2018 Alide_0686 749391034c53b238c3e9b3729735af32 331 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 317 1.3E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0686 749391034c53b238c3e9b3729735af32 331 Gene3D G3DSA:3.40.190.10 129 255 8.4E-96 T 12-10-2018 Alide_0686 749391034c53b238c3e9b3729735af32 331 PIRSF PIRSF017082 1 329 2.8E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0686 749391034c53b238c3e9b3729735af32 331 Gene3D G3DSA:3.40.190.150 31 315 8.4E-96 T 12-10-2018 Alide_1353 13d1c0af907c554abccbd5d075861105 142 SUPERFAMILY SSF49764 9 141 5.49E-38 T 12-10-2018 IPR008978 HSP20-like chaperone Alide_1353 13d1c0af907c554abccbd5d075861105 142 Pfam PF00011 Hsp20/alpha crystallin family 41 137 1.9E-22 T 12-10-2018 IPR002068 Alpha crystallin/Hsp20 domain Alide_1353 13d1c0af907c554abccbd5d075861105 142 Gene3D G3DSA:2.60.40.790 4 142 5.6E-35 T 12-10-2018 IPR008978 HSP20-like chaperone Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2 155 3.6E-34 T 12-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 5 22 7.1E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 195 219 7.1E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 170 194 7.1E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 130 150 7.1E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 235 252 7.1E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 58 85 7.1E-36 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 177 317 3.3E-47 T 12-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 1 319 34.445 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 PIRSF PIRSF000114 1 329 1.1E-92 T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 185 206 - T 12-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 SUPERFAMILY SSF48179 176 327 7.99E-52 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 SUPERFAMILY SSF51735 1 177 7.24E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 Gene3D G3DSA:1.10.1040.10 186 329 8.1E-46 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_3434 26138432d90cc4747080fe20eaa51e7b 330 Gene3D G3DSA:3.40.50.720 1 184 4.7E-47 T 12-10-2018 Alide_4473 dad4ae72731a586f22692247c0105c3b 320 Gene3D G3DSA:3.40.50.300 124 319 9.9E-53 T 12-10-2018 Alide_4473 dad4ae72731a586f22692247c0105c3b 320 TIGRFAM TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB 14 317 3.6E-145 T 12-10-2018 IPR014149 Conjugative transfer, TrbB GO:0000746|GO:0005737 Alide_4473 dad4ae72731a586f22692247c0105c3b 320 SUPERFAMILY SSF52540 13 308 6.26E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4473 dad4ae72731a586f22692247c0105c3b 320 Gene3D G3DSA:3.30.450.90 23 123 2.7E-14 T 12-10-2018 Alide_4473 dad4ae72731a586f22692247c0105c3b 320 Pfam PF00437 Type II/IV secretion system protein 29 294 6.9E-73 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_1106 51f69dacb71c891500e15984d93ce86a 658 SMART SM00433 39 652 4.9E-177 T 12-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 ProSitePatterns PS00177 DNA topoisomerase II signature. 431 439 - T 12-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 Gene3D G3DSA:3.30.230.10 226 404 7.2E-45 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_1106 51f69dacb71c891500e15984d93ce86a 658 Gene3D G3DSA:3.30.565.10 8 225 3.5E-68 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1106 51f69dacb71c891500e15984d93ce86a 658 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 584 648 2.6E-22 T 12-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 Gene3D G3DSA:3.40.50.670 405 651 4.2E-77 T 12-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 39 181 3.8E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1106 51f69dacb71c891500e15984d93ce86a 658 SUPERFAMILY SSF55874 11 225 8.64E-58 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1106 51f69dacb71c891500e15984d93ce86a 658 SUPERFAMILY SSF54211 228 402 4.36E-35 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR00418 DNA topoisomerase II family signature 37 52 2.4E-60 T 12-10-2018 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR00418 DNA topoisomerase II family signature 281 294 2.4E-60 T 12-10-2018 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR00418 DNA topoisomerase II family signature 588 604 2.4E-60 T 12-10-2018 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR00418 DNA topoisomerase II family signature 516 533 2.4E-60 T 12-10-2018 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR00418 DNA topoisomerase II family signature 498 514 2.4E-60 T 12-10-2018 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR00418 DNA topoisomerase II family signature 429 443 2.4E-60 T 12-10-2018 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR00418 DNA topoisomerase II family signature 72 85 2.4E-60 T 12-10-2018 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR00418 DNA topoisomerase II family signature 118 132 2.4E-60 T 12-10-2018 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR00418 DNA topoisomerase II family signature 536 548 2.4E-60 T 12-10-2018 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 SMART SM00387 33 183 1.1E-16 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1106 51f69dacb71c891500e15984d93ce86a 658 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 8 656 43.433 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR01098 Topoisomerase IV subunit B signature 326 341 5.0E-40 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR01098 Topoisomerase IV subunit B signature 377 402 5.0E-40 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR01098 Topoisomerase IV subunit B signature 463 484 5.0E-40 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR01098 Topoisomerase IV subunit B signature 184 201 5.0E-40 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR01098 Topoisomerase IV subunit B signature 309 325 5.0E-40 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR01098 Topoisomerase IV subunit B signature 353 376 5.0E-40 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR01098 Topoisomerase IV subunit B signature 32 45 5.0E-40 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR01098 Topoisomerase IV subunit B signature 202 223 5.0E-40 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 PRINTS PR01098 Topoisomerase IV subunit B signature 144 158 5.0E-40 T 12-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 Pfam PF01751 Toprim domain 428 542 1.6E-11 T 12-10-2018 IPR006171 TOPRIM domain Alide_1106 51f69dacb71c891500e15984d93ce86a 658 SUPERFAMILY SSF56719 403 649 7.32E-71 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Alide_1106 51f69dacb71c891500e15984d93ce86a 658 Pfam PF00204 DNA gyrase B 229 400 3.4E-33 T 12-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_1320 62fe38f096b4ce6c1caeae067cd79e41 179 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 15 121 1.6E-44 T 12-10-2018 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 Alide_1320 62fe38f096b4ce6c1caeae067cd79e41 179 Pfam PF05233 PHB accumulation regulatory domain 125 164 1.8E-15 T 12-10-2018 IPR007897 PHB accumulation regulatory Alide_1320 62fe38f096b4ce6c1caeae067cd79e41 179 Pfam PF05233 PHB accumulation regulatory domain 80 118 5.2E-17 T 12-10-2018 IPR007897 PHB accumulation regulatory Alide_1320 62fe38f096b4ce6c1caeae067cd79e41 179 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 16 75 3.7E-30 T 12-10-2018 IPR012909 PHA accumulation regulator DNA-binding, N-terminal Alide_3590 e626704cecd89e3e04686e22433364d5 686 Pfam PF00145 C-5 cytosine-specific DNA methylase 17 133 7.2E-7 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Alide_3590 e626704cecd89e3e04686e22433364d5 686 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 121 135 8.3E-5 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Alide_3590 e626704cecd89e3e04686e22433364d5 686 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 16 32 8.3E-5 T 12-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Alide_3590 e626704cecd89e3e04686e22433364d5 686 SUPERFAMILY SSF53335 17 671 5.81E-60 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_3906 d1790f96b16fea80b8778f93de23e31d 326 PIRSF PIRSF017082 1 326 6.9E-66 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3906 d1790f96b16fea80b8778f93de23e31d 326 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 30 3.6E-5 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Alide_3906 d1790f96b16fea80b8778f93de23e31d 326 Gene3D G3DSA:3.40.190.10 131 251 7.7E-89 T 12-10-2018 Alide_3906 d1790f96b16fea80b8778f93de23e31d 326 Gene3D G3DSA:3.40.190.150 34 316 7.7E-89 T 12-10-2018 Alide_3906 d1790f96b16fea80b8778f93de23e31d 326 SUPERFAMILY SSF53850 118 292 1.96E-9 T 12-10-2018 Alide_3906 d1790f96b16fea80b8778f93de23e31d 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 322 9.4E-67 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3777 0917d097ccc26168e8612e8814b212d3 290 Pfam PF01435 Peptidase family M48 79 289 3.0E-41 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Alide_3777 0917d097ccc26168e8612e8814b212d3 290 Gene3D G3DSA:3.30.2010.10 70 162 6.3E-31 T 12-10-2018 Alide_3777 0917d097ccc26168e8612e8814b212d3 290 Hamap MF_00188 Protease HtpX [htpX]. 1 289 25.22 T 12-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 Alide_3747 e25d137e00eb92a02e7261773bd75b75 168 ProSitePatterns PS01117 MarR-type HTH domain signature. 76 110 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Alide_3747 e25d137e00eb92a02e7261773bd75b75 168 SUPERFAMILY SSF46785 6 152 2.54E-29 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3747 e25d137e00eb92a02e7261773bd75b75 168 Pfam PF12802 MarR family 42 101 5.1E-13 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_3747 e25d137e00eb92a02e7261773bd75b75 168 SMART SM00347 36 138 7.1E-24 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_3747 e25d137e00eb92a02e7261773bd75b75 168 Gene3D G3DSA:1.10.10.10 2 160 8.8E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 Pfam PF08448 PAS fold 328 432 8.0E-12 T 12-10-2018 IPR013656 PAS fold-4 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 Gene3D G3DSA:1.10.287.130 451 510 5.3E-36 T 12-10-2018 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 Gene3D G3DSA:3.30.450.20 308 431 8.2E-19 T 12-10-2018 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 SMART SM00387 559 677 1.6E-13 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 SUPERFAMILY SSF55785 313 431 9.77E-20 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 560 675 5.7E-11 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 655 1.4E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 597 611 1.4E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 674 1.4E-7 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 SMART SM00388 447 513 1.5E-5 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 SMART SM00091 322 388 1.9E-6 T 12-10-2018 IPR000014 PAS domain Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 SUPERFAMILY SSF47384 449 511 8.63E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 Gene3D G3DSA:3.30.450.20 14 149 3.3E-10 T 12-10-2018 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 Gene3D G3DSA:3.30.565.10 511 674 5.3E-36 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 320 433 3.0E-16 T 12-10-2018 IPR000014 PAS domain Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 Pfam PF00512 His Kinase A (phospho-acceptor) domain 450 511 6.6E-9 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_3728 0d6c4064c5ea531193c712fbcba7ffb2 692 SUPERFAMILY SSF55874 502 675 8.72E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0947 88f551762072e2f03ff72b18f6ae8dbf 293 SUPERFAMILY SSF161098 55 282 5.76E-51 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0947 88f551762072e2f03ff72b18f6ae8dbf 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 292 1.3E-18 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0947 88f551762072e2f03ff72b18f6ae8dbf 293 Gene3D G3DSA:1.10.3720.10 51 292 6.8E-61 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2454 f602c8ccc5d84bb79551ed5d982630d9 266 Pfam PF03180 NLPA lipoprotein 31 266 1.2E-93 T 12-10-2018 IPR004872 Lipoprotein NlpA family Alide_2454 f602c8ccc5d84bb79551ed5d982630d9 266 Gene3D G3DSA:3.40.190.10 112 216 7.3E-98 T 12-10-2018 Alide_2454 f602c8ccc5d84bb79551ed5d982630d9 266 Gene3D G3DSA:3.40.190.10 31 262 7.3E-98 T 12-10-2018 Alide_2454 f602c8ccc5d84bb79551ed5d982630d9 266 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 26 266 1.7E-81 T 12-10-2018 IPR004872 Lipoprotein NlpA family Alide_2454 f602c8ccc5d84bb79551ed5d982630d9 266 SUPERFAMILY SSF53850 31 266 1.31E-89 T 12-10-2018 Alide_2454 f602c8ccc5d84bb79551ed5d982630d9 266 PIRSF PIRSF002854 1 266 1.1E-101 T 12-10-2018 IPR004872 Lipoprotein NlpA family Alide_0459 b58f09fa3f4a3083ae1c16295e0bc783 231 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 5.2E-49 T 12-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein Alide_0459 b58f09fa3f4a3083ae1c16295e0bc783 231 PIRSF PIRSF002155 1 227 6.2E-75 T 12-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0459 b58f09fa3f4a3083ae1c16295e0bc783 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 5.9E-102 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Alide_0459 b58f09fa3f4a3083ae1c16295e0bc783 231 Gene3D G3DSA:3.40.50.790 68 159 2.3E-77 T 12-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich Alide_0459 b58f09fa3f4a3083ae1c16295e0bc783 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 12-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0459 b58f09fa3f4a3083ae1c16295e0bc783 231 SUPERFAMILY SSF56808 6 226 1.19E-79 T 12-10-2018 IPR023674 Ribosomal protein L1-like Alide_0459 b58f09fa3f4a3083ae1c16295e0bc783 231 Gene3D G3DSA:3.30.190.20 21 225 2.3E-77 T 12-10-2018 Alide_0459 b58f09fa3f4a3083ae1c16295e0bc783 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.486 T 12-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Alide_3074 4a295643910660921c222438235f11fa 346 SUPERFAMILY SSF143631 40 340 1.7E-77 T 12-10-2018 IPR003374 ApbE-like superfamily Alide_3074 4a295643910660921c222438235f11fa 346 PIRSF PIRSF006268 11 343 1.4E-66 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Alide_3074 4a295643910660921c222438235f11fa 346 Gene3D G3DSA:3.10.520.20 33 345 5.9E-81 T 12-10-2018 Alide_3074 4a295643910660921c222438235f11fa 346 Pfam PF02424 ApbE family 46 322 3.4E-64 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 Gene3D G3DSA:3.40.47.10 4 272 5.3E-140 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 SUPERFAMILY SSF53901 267 388 1.41E-41 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 ProSitePatterns PS00737 Thiolases signature 2. 335 351 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 Pfam PF00108 Thiolase, N-terminal domain 5 259 1.9E-61 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 387 6.8E-126 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 Gene3D G3DSA:3.40.47.10 126 381 5.3E-140 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 SUPERFAMILY SSF53901 1 261 1.03E-69 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 Pfam PF02803 Thiolase, C-terminal domain 266 387 6.5E-43 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_1564 dd9b7e7062911a4a604f3c166a584d3d 389 PIRSF PIRSF000429 1 389 3.0E-116 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_0017 0949594ce6688df5609bdd35911dfd70 209 SMART SM00479 4 171 4.9E-34 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_0017 0949594ce6688df5609bdd35911dfd70 209 Gene3D G3DSA:3.30.420.10 3 172 8.8E-46 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_0017 0949594ce6688df5609bdd35911dfd70 209 SUPERFAMILY SSF53098 3 172 2.13E-48 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_0017 0949594ce6688df5609bdd35911dfd70 209 Pfam PF00929 Exonuclease 7 162 3.7E-30 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_3502 e9b73df2b884c021b63875b9b33eaee9 392 Gene3D G3DSA:3.10.310.10 10 383 4.7E-126 T 12-10-2018 Alide_3502 e9b73df2b884c021b63875b9b33eaee9 392 Gene3D G3DSA:3.10.310.10 172 370 4.7E-126 T 12-10-2018 Alide_3502 e9b73df2b884c021b63875b9b33eaee9 392 Pfam PF04303 PrpF protein 8 385 9.5E-108 T 12-10-2018 IPR007400 PrpF protein Alide_3502 e9b73df2b884c021b63875b9b33eaee9 392 SUPERFAMILY SSF54506 6 171 4.24E-54 T 12-10-2018 Alide_3502 e9b73df2b884c021b63875b9b33eaee9 392 SUPERFAMILY SSF54506 176 389 5.73E-52 T 12-10-2018 Alide_3058 494972b094ef8529ba9ed98df1337944 470 Gene3D G3DSA:1.20.1600.10 60 466 2.3E-128 T 12-10-2018 Alide_3058 494972b094ef8529ba9ed98df1337944 470 Pfam PF02321 Outer membrane efflux protein 70 256 1.0E-29 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_3058 494972b094ef8529ba9ed98df1337944 470 Pfam PF02321 Outer membrane efflux protein 278 459 1.4E-28 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_3058 494972b094ef8529ba9ed98df1337944 470 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 460 4.4E-121 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Alide_3058 494972b094ef8529ba9ed98df1337944 470 Gene3D G3DSA:2.20.200.10 107 354 2.3E-128 T 12-10-2018 Alide_3058 494972b094ef8529ba9ed98df1337944 470 SUPERFAMILY SSF56954 1 468 1.83E-110 T 12-10-2018 Alide_3801 3a92493400b42852fe055092945a0b6b 573 Gene3D G3DSA:3.30.300.30 463 566 1.4E-32 T 12-10-2018 Alide_3801 3a92493400b42852fe055092945a0b6b 573 ProSitePatterns PS00455 Putative AMP-binding domain signature. 216 227 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_3801 3a92493400b42852fe055092945a0b6b 573 Gene3D G3DSA:3.40.50.12780 20 462 2.1E-124 T 12-10-2018 Alide_3801 3a92493400b42852fe055092945a0b6b 573 SUPERFAMILY SSF56801 21 563 3.4E-164 T 12-10-2018 Alide_3801 3a92493400b42852fe055092945a0b6b 573 Pfam PF13193 AMP-binding enzyme C-terminal domain 476 551 1.6E-19 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_3801 3a92493400b42852fe055092945a0b6b 573 Pfam PF00501 AMP-binding enzyme 35 467 1.5E-109 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 SMART SM00878 344 452 1.9E-49 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 Gene3D G3DSA:3.30.470.130 2 456 6.2E-188 T 12-10-2018 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 Pfam PF00364 Biotin-requiring enzyme 595 660 4.5E-14 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_0192 d460fea241901772ee44f1d6bebf9600 664 SUPERFAMILY SSF56059 91 351 1.47E-66 T 12-10-2018 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 SUPERFAMILY SSF51246 339 455 1.15E-32 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 617 634 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 161 175 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 SUPERFAMILY SSF52440 5 121 9.35E-48 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_0192 d460fea241901772ee44f1d6bebf9600 664 Gene3D G3DSA:2.40.50.100 586 664 6.7E-21 T 12-10-2018 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 Pfam PF00289 Biotin carboxylase, N-terminal domain 10 118 1.6E-42 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 294 301 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 Pfam PF02785 Biotin carboxylase C-terminal domain 344 452 2.4E-28 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 124 330 3.7E-75 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_0192 d460fea241901772ee44f1d6bebf9600 664 SUPERFAMILY SSF51230 587 661 5.5E-19 T 12-10-2018 IPR011053 Single hybrid motif Alide_3839 d465ac21872e0d155dc00df418d73bbb 160 Gene3D G3DSA:2.40.50.180 36 145 1.2E-40 T 12-10-2018 Alide_3839 d465ac21872e0d155dc00df418d73bbb 160 Gene3D G3DSA:2.30.30.40 19 144 1.2E-40 T 12-10-2018 Alide_3839 d465ac21872e0d155dc00df418d73bbb 160 SUPERFAMILY SSF50341 16 152 1.22E-37 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Alide_3839 d465ac21872e0d155dc00df418d73bbb 160 SMART SM00260 13 150 2.0E-38 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_3839 d465ac21872e0d155dc00df418d73bbb 160 Pfam PF01584 CheW-like domain 17 151 3.9E-36 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_4437 9229a72930bce942f1f4cb649d84f689 349 SUPERFAMILY SSF109709 133 242 2.49E-19 T 12-10-2018 Alide_4437 9229a72930bce942f1f4cb649d84f689 349 Gene3D G3DSA:2.30.30.150 288 349 2.4E-31 T 12-10-2018 IPR037048 KorB, C-terminal domain superfamily GO:0003677|GO:0045892 Alide_4437 9229a72930bce942f1f4cb649d84f689 349 Pfam PF06613 KorB C-terminal beta-barrel domain 291 349 1.2E-31 T 12-10-2018 IPR010575 KorB, C-terminal GO:0003677|GO:0045892 Alide_4437 9229a72930bce942f1f4cb649d84f689 349 Gene3D G3DSA:3.90.1530.30 59 127 6.4E-13 T 12-10-2018 Alide_4437 9229a72930bce942f1f4cb649d84f689 349 Gene3D G3DSA:1.10.10.730 131 186 2.6E-28 T 12-10-2018 Alide_4437 9229a72930bce942f1f4cb649d84f689 349 Pfam PF08535 KorB domain 159 245 9.0E-15 T 12-10-2018 IPR013741 Repressor KorB domain Alide_4437 9229a72930bce942f1f4cb649d84f689 349 SUPERFAMILY SSF50037 291 349 4.94E-23 T 12-10-2018 IPR008988 Transcriptional repressor, C-terminal Alide_4437 9229a72930bce942f1f4cb649d84f689 349 Pfam PF02195 ParB-like nuclease domain 47 138 3.3E-19 T 12-10-2018 IPR003115 ParB/Sulfiredoxin Alide_4437 9229a72930bce942f1f4cb649d84f689 349 SUPERFAMILY SSF110849 46 141 4.53E-16 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Alide_4437 9229a72930bce942f1f4cb649d84f689 349 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 43 223 2.2E-62 T 12-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Alide_4437 9229a72930bce942f1f4cb649d84f689 349 SMART SM00470 46 139 1.0E-24 T 12-10-2018 IPR003115 ParB/Sulfiredoxin Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 PIRSF PIRSF016578 2 191 1.9E-9 T 12-10-2018 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 PIRSF PIRSF016578 219 374 7.1E-13 T 12-10-2018 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 Gene3D G3DSA:2.40.110.10 119 231 9.3E-43 T 12-10-2018 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 SUPERFAMILY SSF56645 2 240 1.57E-81 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 Gene3D G3DSA:1.20.140.10 232 376 3.2E-54 T 12-10-2018 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 SUPERFAMILY SSF47203 226 375 6.44E-56 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 7.6E-49 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 2.5E-24 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 Gene3D G3DSA:1.10.540.10 1 118 4.8E-40 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 116 1.1E-35 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3828 76a79152539b67dc66ee6a8256adcc54 376 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 5.7E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 5.7E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 5.7E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 Pfam PF00106 short chain dehydrogenase 6 193 1.1E-46 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 SUPERFAMILY SSF51735 1 232 4.08E-61 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 Gene3D G3DSA:3.40.50.720 1 250 3.6E-62 T 12-10-2018 Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 0.0015 T 12-10-2018 Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 9.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 9.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 9.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 9.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4464 006ef716b8c9bb5ce0bc3017bbf1f412 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.1E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3861 2b6663a740502cc7f87c72fe9c8514f2 481 Pfam PF07196 Flagellin hook IN motif 147 195 2.0E-9 T 12-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Alide_3861 2b6663a740502cc7f87c72fe9c8514f2 481 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 232 465 1.3E-45 T 12-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 Alide_3861 2b6663a740502cc7f87c72fe9c8514f2 481 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 15 112 2.8E-14 T 12-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 Alide_2637 bdbad052117007b37b03384429085eb1 194 PIRSF PIRSF016661 1 188 6.7E-45 T 12-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 Alide_2637 bdbad052117007b37b03384429085eb1 194 Gene3D G3DSA:1.10.1760.20 2 184 2.3E-50 T 12-10-2018 Alide_2637 bdbad052117007b37b03384429085eb1 194 Pfam PF02632 BioY family 37 181 3.3E-33 T 12-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 45.297 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 SUPERFAMILY SSF50104 126 272 4.09E-59 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 274 2.3E-124 T 12-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.0E-33 T 12-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 Gene3D G3DSA:4.10.950.10 196 274 4.6E-35 T 12-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 12-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 PIRSF PIRSF002158 9 274 4.2E-98 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 SMART SM01383 42 118 9.1E-42 T 12-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 Gene3D G3DSA:2.30.30.30 118 195 4.4E-32 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 Gene3D G3DSA:2.40.50.140 1 114 1.4E-46 T 12-10-2018 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 2.6E-55 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 SUPERFAMILY SSF50249 3 124 4.8E-46 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0414 2cf233a1cc49286d4e1e3f3c8440f64f 274 SMART SM01382 124 252 1.5E-86 T 12-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Alide_2288 7f4cd083191f5769f5d72430b034254c 335 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 19 327 3.7E-99 T 12-10-2018 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Alide_2288 7f4cd083191f5769f5d72430b034254c 335 Gene3D G3DSA:1.20.5.170 2 50 2.2E-14 T 12-10-2018 Alide_2288 7f4cd083191f5769f5d72430b034254c 335 Gene3D G3DSA:1.10.287.130 271 333 5.2E-18 T 12-10-2018 Alide_2288 7f4cd083191f5769f5d72430b034254c 335 Pfam PF03308 ArgK protein 22 299 2.2E-102 T 12-10-2018 Alide_2288 7f4cd083191f5769f5d72430b034254c 335 Gene3D G3DSA:3.40.50.300 51 270 2.6E-78 T 12-10-2018 Alide_2288 7f4cd083191f5769f5d72430b034254c 335 SUPERFAMILY SSF52540 19 330 4.83E-84 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4476 d53ce4c7348f5105ec0fbff411a2fdc8 852 SMART SM00382 487 748 8.9E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4476 d53ce4c7348f5105ec0fbff411a2fdc8 852 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 218 431 2.3E-64 T 12-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 Alide_4476 d53ce4c7348f5105ec0fbff411a2fdc8 852 SUPERFAMILY SSF52540 463 797 1.47E-45 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4476 d53ce4c7348f5105ec0fbff411a2fdc8 852 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 36 841 3.6E-223 T 12-10-2018 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 Alide_4476 d53ce4c7348f5105ec0fbff411a2fdc8 852 Gene3D G3DSA:3.40.50.300 613 814 4.0E-25 T 12-10-2018 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 SMART SM00382 173 330 5.2E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 103 374 57.488 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 SUPERFAMILY SSF52540 172 373 3.72E-48 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 Pfam PF00448 SRP54-type protein, GTPase domain 174 373 1.1E-70 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 SMART SM00963 84 160 2.8E-16 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 347 360 - T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 104 373 1.0E-98 T 12-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 SMART SM00962 174 374 2.2E-107 T 12-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 Gene3D G3DSA:3.40.50.300 174 362 2.4E-105 T 12-10-2018 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 Gene3D G3DSA:1.20.120.140 82 372 2.4E-105 T 12-10-2018 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 Pfam PF02881 SRP54-type protein, helical bundle domain 93 156 5.0E-11 T 12-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Alide_3451 56ade41ffb2fc4c341268057dee52e61 374 SUPERFAMILY SSF47364 79 154 5.23E-17 T 12-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 Alide_1727 697142d2ecdd51df57a8ac67782a2e1a 504 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 132 160 - T 12-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Alide_1727 697142d2ecdd51df57a8ac67782a2e1a 504 Gene3D G3DSA:1.10.530.10 106 260 2.4E-32 T 12-10-2018 Alide_1727 697142d2ecdd51df57a8ac67782a2e1a 504 SUPERFAMILY SSF53955 111 270 2.53E-41 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_1727 697142d2ecdd51df57a8ac67782a2e1a 504 Gene3D G3DSA:3.10.350.10 395 459 9.1E-9 T 12-10-2018 IPR036779 LysM domain superfamily Alide_1727 697142d2ecdd51df57a8ac67782a2e1a 504 Pfam PF01476 LysM domain 355 386 0.12 T 12-10-2018 IPR018392 LysM domain Alide_1727 697142d2ecdd51df57a8ac67782a2e1a 504 Pfam PF01476 LysM domain 422 451 2.9E-4 T 12-10-2018 IPR018392 LysM domain Alide_1727 697142d2ecdd51df57a8ac67782a2e1a 504 Pfam PF01464 Transglycosylase SLT domain 120 222 1.0E-25 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_1727 697142d2ecdd51df57a8ac67782a2e1a 504 SUPERFAMILY SSF54106 417 459 8.11E-5 T 12-10-2018 Alide_1727 697142d2ecdd51df57a8ac67782a2e1a 504 Gene3D G3DSA:3.10.350.10 342 394 9.1E-9 T 12-10-2018 IPR036779 LysM domain superfamily Alide_4162 48e429407ee45b3e59b1692006663b3e 323 Gene3D G3DSA:3.40.190.150 27 313 9.7E-107 T 12-10-2018 Alide_4162 48e429407ee45b3e59b1692006663b3e 323 Gene3D G3DSA:3.40.190.10 125 248 9.7E-107 T 12-10-2018 Alide_4162 48e429407ee45b3e59b1692006663b3e 323 SUPERFAMILY SSF53850 106 286 6.33E-14 T 12-10-2018 Alide_4162 48e429407ee45b3e59b1692006663b3e 323 PIRSF PIRSF017082 2 323 3.8E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4162 48e429407ee45b3e59b1692006663b3e 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 319 3.3E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4202 ffd2ee641b76b48cf7c148f7a0f2dfa4 345 Pfam PF00107 Zinc-binding dehydrogenase 178 301 3.6E-36 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_4202 ffd2ee641b76b48cf7c148f7a0f2dfa4 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 134 5.2E-23 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_4202 ffd2ee641b76b48cf7c148f7a0f2dfa4 345 SMART SM00829 10 340 6.1E-14 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_4202 ffd2ee641b76b48cf7c148f7a0f2dfa4 345 Gene3D G3DSA:3.40.50.720 148 290 6.9E-107 T 12-10-2018 Alide_4202 ffd2ee641b76b48cf7c148f7a0f2dfa4 345 Gene3D G3DSA:3.90.180.10 22 333 6.9E-107 T 12-10-2018 Alide_4202 ffd2ee641b76b48cf7c148f7a0f2dfa4 345 SUPERFAMILY SSF51735 143 314 2.03E-48 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4202 ffd2ee641b76b48cf7c148f7a0f2dfa4 345 SUPERFAMILY SSF50129 1 172 1.07E-40 T 12-10-2018 IPR011032 GroES-like superfamily Alide_1768 e26591eb23a299f8c29bc5fc500006ce 184 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 117 136 - T 12-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 Alide_1768 e26591eb23a299f8c29bc5fc500006ce 184 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 137 1.0E-12 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Alide_1768 e26591eb23a299f8c29bc5fc500006ce 184 Gene3D G3DSA:3.10.180.10 3 167 1.6E-30 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_1768 e26591eb23a299f8c29bc5fc500006ce 184 SUPERFAMILY SSF54593 4 151 2.15E-31 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0843 72f64564c75d0dacbc2946873266ca1a 185 PIRSF PIRSF016481 3 181 1.2E-43 T 12-10-2018 IPR007446 Pilus assembly protein PilP Alide_0843 72f64564c75d0dacbc2946873266ca1a 185 Pfam PF04351 Pilus assembly protein, PilP 28 177 2.7E-48 T 12-10-2018 IPR007446 Pilus assembly protein PilP Alide_0843 72f64564c75d0dacbc2946873266ca1a 185 Gene3D G3DSA:2.30.30.830 86 178 8.7E-30 T 12-10-2018 Alide_1751 8da2e1c9d191b8f5ff2fa986dd93a7b8 407 SUPERFAMILY SSF55729 191 373 2.88E-36 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_1751 8da2e1c9d191b8f5ff2fa986dd93a7b8 407 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 25 403 1.3E-148 T 12-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition Alide_1751 8da2e1c9d191b8f5ff2fa986dd93a7b8 407 Gene3D G3DSA:3.40.630.30 190 354 1.4E-6 T 12-10-2018 Alide_4205 13f1951ac2f6707d139fedcf2c7e2cd6 398 Pfam PF13458 Periplasmic binding protein 27 362 9.8E-80 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_4205 13f1951ac2f6707d139fedcf2c7e2cd6 398 SUPERFAMILY SSF53822 28 397 5.0E-87 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_4205 13f1951ac2f6707d139fedcf2c7e2cd6 398 Gene3D G3DSA:3.40.50.2300 147 278 5.4E-108 T 12-10-2018 Alide_4205 13f1951ac2f6707d139fedcf2c7e2cd6 398 Gene3D G3DSA:3.40.50.2300 28 329 5.4E-108 T 12-10-2018 Alide_1594 733c89bc7f41018ed842cd42e78d1e7a 348 Pfam PF01904 Protein of unknown function DUF72 72 339 8.6E-42 T 12-10-2018 IPR002763 Protein of unknown function DUF72 Alide_1594 733c89bc7f41018ed842cd42e78d1e7a 348 Gene3D G3DSA:3.20.20.410 39 343 5.7E-32 T 12-10-2018 IPR036520 UPF0759 superfamily Alide_1594 733c89bc7f41018ed842cd42e78d1e7a 348 SUPERFAMILY SSF117396 47 341 5.49E-52 T 12-10-2018 IPR036520 UPF0759 superfamily Alide_3398 89a942f4ab70df5a50b7346353e85c17 167 SUPERFAMILY SSF54637 13 163 1.4E-47 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_3398 89a942f4ab70df5a50b7346353e85c17 167 Gene3D G3DSA:3.10.129.10 10 161 1.6E-50 T 12-10-2018 Alide_3398 89a942f4ab70df5a50b7346353e85c17 167 Pfam PF01575 MaoC like domain 25 136 3.6E-20 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_4167 02a0e084cc33bedfb555f6cd0f80b9f1 302 Gene3D G3DSA:3.40.190.290 92 300 1.8E-36 T 12-10-2018 Alide_4167 02a0e084cc33bedfb555f6cd0f80b9f1 302 SUPERFAMILY SSF53850 90 293 2.01E-39 T 12-10-2018 Alide_4167 02a0e084cc33bedfb555f6cd0f80b9f1 302 Pfam PF03466 LysR substrate binding domain 90 293 3.1E-35 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4167 02a0e084cc33bedfb555f6cd0f80b9f1 302 SUPERFAMILY SSF46785 2 113 1.96E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4167 02a0e084cc33bedfb555f6cd0f80b9f1 302 Gene3D G3DSA:1.10.10.10 3 90 3.8E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4167 02a0e084cc33bedfb555f6cd0f80b9f1 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.8E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2161 4176a7d9e0920618adfc0e77f4f83ed3 117 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 32 101 6.4E-11 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2161 4176a7d9e0920618adfc0e77f4f83ed3 117 SUPERFAMILY SSF46626 7 106 1.7E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2161 4176a7d9e0920618adfc0e77f4f83ed3 117 Gene3D G3DSA:1.10.760.10 2 109 4.4E-14 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 SMART SM00419 184 232 2.3E-14 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 Pfam PF00027 Cyclic nucleotide-binding domain 46 129 5.4E-15 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 SUPERFAMILY SSF46785 163 240 1.03E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 SMART SM00100 27 148 1.1E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 Gene3D G3DSA:1.10.10.10 162 245 1.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 SUPERFAMILY SSF51206 20 159 1.57E-29 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 Gene3D G3DSA:2.60.120.10 40 160 2.9E-40 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 190 206 1.0E-9 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 206 221 1.0E-9 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_3321 9b17f9eaaf953c02b6b5e7194bf48e70 247 Pfam PF13545 Crp-like helix-turn-helix domain 165 239 3.4E-19 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_0309 f080c0e89855d4899ad0f4960ab1e992 153 Pfam PF01575 MaoC like domain 17 132 7.6E-14 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_0309 f080c0e89855d4899ad0f4960ab1e992 153 Gene3D G3DSA:3.10.129.10 4 153 3.3E-38 T 12-10-2018 Alide_0309 f080c0e89855d4899ad0f4960ab1e992 153 SUPERFAMILY SSF54637 8 151 6.76E-35 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 1.0E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 1.0E-5 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 Pfam PF07729 FCD domain 83 203 1.9E-18 T 12-10-2018 IPR011711 GntR, C-terminal Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 Gene3D G3DSA:1.10.10.10 8 74 8.1E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 SUPERFAMILY SSF46785 6 91 4.31E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 73 8.2E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 SMART SM00345 15 73 7.9E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 Gene3D G3DSA:1.20.120.530 76 219 2.4E-31 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 SMART SM00895 83 205 2.5E-16 T 12-10-2018 IPR011711 GntR, C-terminal Alide_1629 36a5564850f9611d445f14a2c8c4d6f3 225 SUPERFAMILY SSF48008 81 213 3.14E-27 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2947 457c29d71c1ff60a5b99d8267212589e 490 Gene3D G3DSA:3.40.309.10 262 453 6.8E-157 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_2947 457c29d71c1ff60a5b99d8267212589e 490 SUPERFAMILY SSF53720 10 486 3.67E-143 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_2947 457c29d71c1ff60a5b99d8267212589e 490 Gene3D G3DSA:3.40.605.10 19 478 6.8E-157 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_2947 457c29d71c1ff60a5b99d8267212589e 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 257 264 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_2947 457c29d71c1ff60a5b99d8267212589e 490 Pfam PF00171 Aldehyde dehydrogenase family 20 483 6.0E-146 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_0373 53c154ee71237507e60387f71ca59d55 481 SUPERFAMILY SSF55931 10 300 5.23E-117 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Alide_0373 53c154ee71237507e60387f71ca59d55 481 Gene3D G3DSA:1.10.10.410 420 481 3.5E-28 T 12-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Alide_0373 53c154ee71237507e60387f71ca59d55 481 Pfam PF02637 GatB domain 333 480 2.3E-53 T 12-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Alide_0373 53c154ee71237507e60387f71ca59d55 481 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 149 163 - T 12-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 Alide_0373 53c154ee71237507e60387f71ca59d55 481 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 9 480 2.6E-168 T 12-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Alide_0373 53c154ee71237507e60387f71ca59d55 481 SMART SM00845 332 480 6.7E-79 T 12-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Alide_0373 53c154ee71237507e60387f71ca59d55 481 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 8 481 37.02 T 12-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Alide_0373 53c154ee71237507e60387f71ca59d55 481 Pfam PF02934 GatB/GatE catalytic domain 11 293 9.2E-110 T 12-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 Alide_0373 53c154ee71237507e60387f71ca59d55 481 Gene3D G3DSA:1.10.150.380 301 419 5.7E-32 T 12-10-2018 Alide_0373 53c154ee71237507e60387f71ca59d55 481 SUPERFAMILY SSF89095 301 406 1.44E-33 T 12-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Alide_0485 36b23eafc642092afada4853b56de035 309 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 12 292 1.7E-44 T 12-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Alide_3205 787dcd33a16a80641534845b5b88d707 612 Gene3D G3DSA:1.20.140.10 305 463 4.8E-34 T 12-10-2018 Alide_3205 787dcd33a16a80641534845b5b88d707 612 SUPERFAMILY SSF47203 303 464 3.87E-34 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3205 787dcd33a16a80641534845b5b88d707 612 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 198 293 5.1E-14 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3205 787dcd33a16a80641534845b5b88d707 612 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 305 460 1.1E-31 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3205 787dcd33a16a80641534845b5b88d707 612 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 419 438 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_3205 787dcd33a16a80641534845b5b88d707 612 SUPERFAMILY SSF56645 115 313 2.36E-36 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3205 787dcd33a16a80641534845b5b88d707 612 Gene3D G3DSA:2.40.110.20 152 304 1.1E-42 T 12-10-2018 Alide_0160 60820c321ea92b57ea30697ee79d2792 461 SUPERFAMILY SSF103378 10 452 4.32E-114 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_0160 60820c321ea92b57ea30697ee79d2792 461 Pfam PF03972 MmgE/PrpD family 12 446 4.2E-129 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_0160 60820c321ea92b57ea30697ee79d2792 461 Gene3D G3DSA:1.10.4100.10 30 422 3.2E-99 T 12-10-2018 Alide_0160 60820c321ea92b57ea30697ee79d2792 461 Gene3D G3DSA:3.30.1330.120 276 407 3.2E-99 T 12-10-2018 Alide_1044 c48e02e687938d2c1406df077bb4eea1 267 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 10 241 2.3E-66 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_1044 c48e02e687938d2c1406df077bb4eea1 267 ProSitePatterns PS00171 Triosephosphate isomerase active site. 168 178 - T 12-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_1044 c48e02e687938d2c1406df077bb4eea1 267 Pfam PF00121 Triosephosphate isomerase 9 248 1.5E-90 T 12-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_1044 c48e02e687938d2c1406df077bb4eea1 267 Gene3D G3DSA:3.20.20.70 1 259 9.2E-100 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1044 c48e02e687938d2c1406df077bb4eea1 267 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 7 250 61.849 T 12-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_1044 c48e02e687938d2c1406df077bb4eea1 267 SUPERFAMILY SSF51351 4 250 2.23E-89 T 12-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 269 291 4.1E-59 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 128 145 4.1E-59 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 146 164 4.1E-59 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 184 201 4.1E-59 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 219 231 4.1E-59 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 4.1E-59 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 166 182 4.1E-59 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 101 117 4.1E-59 T 12-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 PIRSF PIRSF000532 1 355 1.8E-109 T 12-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 Gene3D G3DSA:3.40.50.450 5 329 1.0E-99 T 12-10-2018 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 Pfam PF00365 Phosphofructokinase 4 304 5.5E-94 T 12-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 Gene3D G3DSA:3.40.50.460 148 285 1.0E-99 T 12-10-2018 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 3 354 38.513 T 12-10-2018 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Alide_3167 e7a0011b6998651f48b0b4141a07cbd8 355 SUPERFAMILY SSF53784 3 346 2.22E-111 T 12-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Alide_1958 a23db9cf8437f47b073b58ce56c8d23b 234 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 108 4.4E-33 T 12-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1958 a23db9cf8437f47b073b58ce56c8d23b 234 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 226 5.8E-86 T 12-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1958 a23db9cf8437f47b073b58ce56c8d23b 234 SUPERFAMILY SSF54292 2 102 6.46E-29 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_1958 a23db9cf8437f47b073b58ce56c8d23b 234 Gene3D G3DSA:1.10.1060.10 103 234 3.8E-58 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Alide_1958 a23db9cf8437f47b073b58ce56c8d23b 234 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_1958 a23db9cf8437f47b073b58ce56c8d23b 234 Gene3D G3DSA:3.10.20.30 1 102 8.2E-37 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_1958 a23db9cf8437f47b073b58ce56c8d23b 234 SUPERFAMILY SSF46548 103 232 2.44E-40 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Alide_1958 a23db9cf8437f47b073b58ce56c8d23b 234 Pfam PF13534 4Fe-4S dicluster domain 144 216 1.6E-9 T 12-10-2018 Alide_0140 37a786fe295cd14896c5e38801e4d091 392 SUPERFAMILY SSF53901 1 264 2.76E-69 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0140 37a786fe295cd14896c5e38801e4d091 392 Gene3D G3DSA:3.40.47.10 6 289 3.7E-137 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0140 37a786fe295cd14896c5e38801e4d091 392 Pfam PF00108 Thiolase, N-terminal domain 5 262 1.8E-64 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_0140 37a786fe295cd14896c5e38801e4d091 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 1.4E-129 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_0140 37a786fe295cd14896c5e38801e4d091 392 Gene3D G3DSA:3.40.47.10 125 386 3.7E-137 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0140 37a786fe295cd14896c5e38801e4d091 392 Pfam PF02803 Thiolase, C-terminal domain 270 391 3.3E-40 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_0140 37a786fe295cd14896c5e38801e4d091 392 PIRSF PIRSF000429 1 392 4.9E-117 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_0140 37a786fe295cd14896c5e38801e4d091 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_0140 37a786fe295cd14896c5e38801e4d091 392 SUPERFAMILY SSF53901 270 391 1.23E-40 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0650 90d399086fc951ea5265018a5ab691df 146 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 17 38 2.3E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0650 90d399086fc951ea5265018a5ab691df 146 Pfam PF07963 Prokaryotic N-terminal methylation motif 14 38 1.6E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0650 90d399086fc951ea5265018a5ab691df 146 SUPERFAMILY SSF54523 44 145 2.15E-35 T 12-10-2018 Alide_0650 90d399086fc951ea5265018a5ab691df 146 Pfam PF08334 Type II secretion system (T2SS), protein G 41 146 1.2E-39 T 12-10-2018 IPR013545 Type II secretion system protein G Alide_0650 90d399086fc951ea5265018a5ab691df 146 Gene3D G3DSA:3.30.700.10 41 146 3.0E-34 T 12-10-2018 Alide_0650 90d399086fc951ea5265018a5ab691df 146 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 17 145 9.2E-47 T 12-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 Alide_0650 90d399086fc951ea5265018a5ab691df 146 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 17 37 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0650 90d399086fc951ea5265018a5ab691df 146 PRINTS PR00813 Bacterial general secretion pathway protein G signature 18 43 8.0E-14 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Alide_0650 90d399086fc951ea5265018a5ab691df 146 PRINTS PR00813 Bacterial general secretion pathway protein G signature 54 72 8.0E-14 T 12-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Alide_1413 a665eb5f60d5bacf421db2c5c144ecd0 382 Gene3D G3DSA:3.40.50.1100 29 327 3.7E-67 T 12-10-2018 Alide_1413 a665eb5f60d5bacf421db2c5c144ecd0 382 SUPERFAMILY SSF53686 24 340 1.31E-69 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_1413 a665eb5f60d5bacf421db2c5c144ecd0 382 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 37 319 5.4E-45 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_1413 a665eb5f60d5bacf421db2c5c144ecd0 382 Gene3D G3DSA:3.40.50.1100 55 161 3.7E-67 T 12-10-2018 Alide_4019 74d98742c0f980d77c82d2882a82200b 127 Pfam PF09686 Plasmid protein of unknown function (Plasmid_RAQPRD) 35 109 2.0E-26 T 12-10-2018 IPR019110 Uncharacterised protein family, RAQPRD Alide_4019 74d98742c0f980d77c82d2882a82200b 127 TIGRFAM TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family 18 110 7.3E-34 T 12-10-2018 IPR019110 Uncharacterised protein family, RAQPRD Alide_3268 cdd6285b3f0a1494d00b4fc3c9815e11 183 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 3 140 1.7E-48 T 12-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 Alide_3268 cdd6285b3f0a1494d00b4fc3c9815e11 183 Gene3D G3DSA:2.20.25.120 47 79 3.9E-54 T 12-10-2018 Alide_3268 cdd6285b3f0a1494d00b4fc3c9815e11 183 SUPERFAMILY SSF52540 1 163 5.57E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3268 cdd6285b3f0a1494d00b4fc3c9815e11 183 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 3 166 8.0E-45 T 12-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 Alide_3268 cdd6285b3f0a1494d00b4fc3c9815e11 183 Gene3D G3DSA:3.40.50.300 4 165 3.9E-54 T 12-10-2018 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 SUPERFAMILY SSF47240 1 156 8.34E-53 T 12-10-2018 IPR009078 Ferritin-like superfamily Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 PIRSF PIRSF002560 1 157 1.1E-71 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 Gene3D G3DSA:1.20.1260.10 1 157 4.3E-68 T 12-10-2018 IPR012347 Ferritin-like Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 Pfam PF00210 Ferritin-like domain 8 143 3.9E-40 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 4.7E-73 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 PRINTS PR00601 Bacterioferritin signature 23 43 5.3E-66 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 PRINTS PR00601 Bacterioferritin signature 44 64 5.3E-66 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 PRINTS PR00601 Bacterioferritin signature 86 106 5.3E-66 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 PRINTS PR00601 Bacterioferritin signature 128 149 5.3E-66 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 PRINTS PR00601 Bacterioferritin signature 107 127 5.3E-66 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 PRINTS PR00601 Bacterioferritin signature 65 85 5.3E-66 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_2807 1fa1923cafb0e5ba7b4dd1408f69c9bf 158 PRINTS PR00601 Bacterioferritin signature 3 22 5.3E-66 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_0451 6e867429d2da711f14875e642c430b56 481 Gene3D G3DSA:2.20.200.10 109 359 3.4E-142 T 12-10-2018 Alide_0451 6e867429d2da711f14875e642c430b56 481 Pfam PF02321 Outer membrane efflux protein 288 468 2.0E-27 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_0451 6e867429d2da711f14875e642c430b56 481 Pfam PF02321 Outer membrane efflux protein 72 256 4.6E-24 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_0451 6e867429d2da711f14875e642c430b56 481 SUPERFAMILY SSF56954 5 473 2.35E-114 T 12-10-2018 Alide_0451 6e867429d2da711f14875e642c430b56 481 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 19 470 1.7E-120 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Alide_0451 6e867429d2da711f14875e642c430b56 481 Gene3D G3DSA:1.20.1600.10 61 470 3.4E-142 T 12-10-2018 Alide_3464 5804a12dbe4eb59caa47fe5cc462ca5f 355 Gene3D G3DSA:3.90.180.10 17 342 2.1E-96 T 12-10-2018 Alide_3464 5804a12dbe4eb59caa47fe5cc462ca5f 355 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 71 85 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Alide_3464 5804a12dbe4eb59caa47fe5cc462ca5f 355 SMART SM00829 10 349 2.1E-8 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_3464 5804a12dbe4eb59caa47fe5cc462ca5f 355 Gene3D G3DSA:3.40.50.720 159 299 2.1E-96 T 12-10-2018 Alide_3464 5804a12dbe4eb59caa47fe5cc462ca5f 355 Pfam PF00107 Zinc-binding dehydrogenase 187 313 1.4E-27 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_3464 5804a12dbe4eb59caa47fe5cc462ca5f 355 SUPERFAMILY SSF51735 148 318 4.05E-36 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3464 5804a12dbe4eb59caa47fe5cc462ca5f 355 SUPERFAMILY SSF50129 6 192 2.28E-43 T 12-10-2018 IPR011032 GroES-like superfamily Alide_3464 5804a12dbe4eb59caa47fe5cc462ca5f 355 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 139 1.1E-31 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_0487 1fe81b4337288c8bd9adad2714cfa105 132 Gene3D G3DSA:3.40.1350.10 23 132 4.1E-27 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 Alide_0487 1fe81b4337288c8bd9adad2714cfa105 132 SUPERFAMILY SSF52980 19 124 3.35E-16 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Alide_0487 1fe81b4337288c8bd9adad2714cfa105 132 Pfam PF02021 Uncharacterised protein family UPF0102 24 117 1.6E-23 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 Alide_0487 1fe81b4337288c8bd9adad2714cfa105 132 Hamap MF_00048 UPF0102 protein YraN [yraN]. 17 130 21.135 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 Alide_0487 1fe81b4337288c8bd9adad2714cfa105 132 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 17 130 2.8E-22 T 12-10-2018 IPR003509 Uncharacterised protein family UPF0102 Alide_4246 a9852b50c77e330aa2eed13367a08305 204 Gene3D G3DSA:3.40.30.10 3 198 5.6E-70 T 12-10-2018 Alide_4246 a9852b50c77e330aa2eed13367a08305 204 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 75 1.5E-18 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_4246 a9852b50c77e330aa2eed13367a08305 204 Gene3D G3DSA:1.20.1050.10 79 195 5.6E-70 T 12-10-2018 Alide_4246 a9852b50c77e330aa2eed13367a08305 204 Pfam PF13410 Glutathione S-transferase, C-terminal domain 123 187 7.7E-9 T 12-10-2018 Alide_4246 a9852b50c77e330aa2eed13367a08305 204 SUPERFAMILY SSF47616 69 203 1.81E-22 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_4246 a9852b50c77e330aa2eed13367a08305 204 SUPERFAMILY SSF52833 1 101 3.2E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 Gene3D G3DSA:1.10.8.870 434 530 1.2E-19 T 12-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 437 515 1.5E-16 T 12-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 Pfam PF01266 FAD dependent oxidoreductase 28 390 9.8E-56 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 101 113 2.5E-30 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 378 390 2.5E-30 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 27 39 2.5E-30 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 40 50 2.5E-30 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 345 351 2.5E-30 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 56 68 2.5E-30 T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 Gene3D G3DSA:3.30.9.10 105 352 3.4E-129 T 12-10-2018 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 383 393 - T 12-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 Gene3D G3DSA:3.50.50.60 28 397 3.4E-129 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3974 0ef2d0891d8f239570afe09768d4f554 532 SUPERFAMILY SSF51905 26 355 3.18E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0466 aefb4665e1c8ab9ee0d55d30dcd36b2b 193 Pfam PF14334 Domain of unknown function (DUF4390) 22 180 1.3E-53 T 12-10-2018 IPR025500 Protein of unknown function DUF4390 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 3.9E-64 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 3.9E-64 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 3 19 3.9E-64 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 3.9E-64 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 112 135 3.9E-64 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 3.9E-64 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 32 58 3.9E-64 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 7 329 3.3E-106 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 Gene3D G3DSA:1.10.220.30 193 331 2.0E-45 T 12-10-2018 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 Pfam PF14842 FliG N-terminal domain 5 102 2.9E-30 T 12-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 Pfam PF01706 FliG C-terminal domain 216 322 1.9E-40 T 12-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 Pfam PF14841 FliG middle domain 115 182 3.4E-24 T 12-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 Gene3D G3DSA:1.10.220.30 89 188 5.7E-27 T 12-10-2018 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 PIRSF PIRSF003161 1 331 1.4E-113 T 12-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 SUPERFAMILY SSF48029 3 122 2.22E-23 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 Gene3D G3DSA:1.10.220.30 3 84 3.0E-21 T 12-10-2018 Alide_3856 28db8179bd50763f45d43455b2a4b8eb 331 SUPERFAMILY SSF48029 113 323 1.31E-65 T 12-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical Alide_2655 19acf2e3b24e1015fcc43c9fdfb1a1c7 336 PIRSF PIRSF006470 1 331 2.3E-115 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Alide_2655 19acf2e3b24e1015fcc43c9fdfb1a1c7 336 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 311 1.0E-89 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Alide_2655 19acf2e3b24e1015fcc43c9fdfb1a1c7 336 Gene3D G3DSA:3.40.190.170 28 329 8.0E-101 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Alide_2655 19acf2e3b24e1015fcc43c9fdfb1a1c7 336 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 32 286 6.8E-82 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Alide_0792 6597394b8eb33b7583d93e7443696b92 777 PRINTS PR00811 Bacterial general secretion pathway protein D signature 434 444 1.3E-29 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0792 6597394b8eb33b7583d93e7443696b92 777 PRINTS PR00811 Bacterial general secretion pathway protein D signature 522 546 1.3E-29 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0792 6597394b8eb33b7583d93e7443696b92 777 PRINTS PR00811 Bacterial general secretion pathway protein D signature 681 695 1.3E-29 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0792 6597394b8eb33b7583d93e7443696b92 777 PRINTS PR00811 Bacterial general secretion pathway protein D signature 658 676 1.3E-29 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0792 6597394b8eb33b7583d93e7443696b92 777 PRINTS PR00811 Bacterial general secretion pathway protein D signature 557 567 1.3E-29 T 12-10-2018 IPR001775 GspD/PilQ family Alide_0792 6597394b8eb33b7583d93e7443696b92 777 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 50 702 6.5E-183 T 12-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 Alide_0792 6597394b8eb33b7583d93e7443696b92 777 Pfam PF03958 Bacterial type II/III secretion system short domain 306 434 1.8E-13 T 12-10-2018 IPR005644 NolW-like Alide_0792 6597394b8eb33b7583d93e7443696b92 777 Pfam PF03958 Bacterial type II/III secretion system short domain 213 295 8.6E-15 T 12-10-2018 IPR005644 NolW-like Alide_0792 6597394b8eb33b7583d93e7443696b92 777 Pfam PF03958 Bacterial type II/III secretion system short domain 150 209 6.8E-9 T 12-10-2018 IPR005644 NolW-like Alide_0792 6597394b8eb33b7583d93e7443696b92 777 Gene3D G3DSA:3.30.1370.120 210 294 1.1E-14 T 12-10-2018 IPR038591 NolW-like superfamily Alide_0792 6597394b8eb33b7583d93e7443696b92 777 Pfam PF00263 Bacterial type II and III secretion system protein 527 694 1.4E-50 T 12-10-2018 IPR004846 Type II/III secretion system GO:0009306 Alide_0792 6597394b8eb33b7583d93e7443696b92 777 Gene3D G3DSA:3.30.1370.120 41 208 8.9E-55 T 12-10-2018 IPR038591 NolW-like superfamily Alide_3226 c881ff8d804c9234da03fe57ad10ebc6 543 Pfam PF04293 SpoVR like protein 51 484 7.1E-172 T 12-10-2018 IPR007390 Sporulation stage V, protein R Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 SUPERFAMILY SSF81301 18 248 2.62E-54 T 12-10-2018 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Gene3D G3DSA:1.20.120.330 265 423 1.1E-52 T 12-10-2018 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 SUPERFAMILY SSF81301 504 784 1.9E-67 T 12-10-2018 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 7 914 17.003 T 12-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 58 242 2.4E-48 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 530 775 4.9E-60 T 12-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Pfam PF08335 GlnD PII-uridylyltransferase 809 885 1.4E-7 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Pfam PF08335 GlnD PII-uridylyltransferase 288 419 3.6E-39 T 12-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 SUPERFAMILY SSF81593 267 420 1.65E-40 T 12-10-2018 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Gene3D G3DSA:1.20.120.330 782 914 3.8E-37 T 12-10-2018 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Gene3D G3DSA:1.20.120.1510 435 538 9.6E-6 T 12-10-2018 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Gene3D G3DSA:3.30.460.100 539 781 4.6E-73 T 12-10-2018 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 Gene3D G3DSA:3.30.460.100 33 258 5.6E-55 T 12-10-2018 Alide_4243 70e7d9b10fdce2acc5b7e733aeb768a3 915 SUPERFAMILY SSF81593 785 913 8.63E-27 T 12-10-2018 Alide_0099 55506ad4b3d92e9608d5eea234dca52b 253 Gene3D G3DSA:2.160.20.70 145 253 1.3E-31 T 12-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 Alide_0099 55506ad4b3d92e9608d5eea234dca52b 253 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 149 251 5.1E-30 T 12-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 Alide_0099 55506ad4b3d92e9608d5eea234dca52b 253 Gene3D G3DSA:3.30.750.120 8 123 1.2E-18 T 12-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily Alide_0099 55506ad4b3d92e9608d5eea234dca52b 253 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 13 253 4.6E-58 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Alide_0099 55506ad4b3d92e9608d5eea234dca52b 253 SUPERFAMILY SSF63848 148 253 5.23E-29 T 12-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 Alide_0099 55506ad4b3d92e9608d5eea234dca52b 253 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 12 92 1.4E-12 T 12-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 Alide_0099 55506ad4b3d92e9608d5eea234dca52b 253 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 12 253 24.089 T 12-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Alide_3402 c286fa88b901c37ffbdda9d04203b426 349 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 15 320 7.5E-108 T 12-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 Alide_3402 c286fa88b901c37ffbdda9d04203b426 349 Gene3D G3DSA:3.40.250.10 12 132 3.9E-38 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_3402 c286fa88b901c37ffbdda9d04203b426 349 Pfam PF00581 Rhodanese-like domain 16 127 6.8E-9 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_3402 c286fa88b901c37ffbdda9d04203b426 349 SMART SM00450 2 131 1.3E-8 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_3402 c286fa88b901c37ffbdda9d04203b426 349 SUPERFAMILY SSF52821 17 132 2.1E-24 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_3186 056dba587eab0c5627a83df9dcbd111d 326 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 326 69.688 T 12-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Alide_3186 056dba587eab0c5627a83df9dcbd111d 326 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 114 191 9.4E-34 T 12-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Alide_3186 056dba587eab0c5627a83df9dcbd111d 326 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 4 326 8.9E-121 T 12-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Alide_3186 056dba587eab0c5627a83df9dcbd111d 326 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 237 325 1.1E-36 T 12-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Alide_3186 056dba587eab0c5627a83df9dcbd111d 326 Gene3D G3DSA:3.40.47.10 1 326 8.9E-129 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3186 056dba587eab0c5627a83df9dcbd111d 326 SUPERFAMILY SSF53901 4 325 4.62E-75 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 Gene3D G3DSA:3.20.20.120 129 428 2.8E-136 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 Gene3D G3DSA:3.30.390.10 1 127 1.8E-55 T 12-10-2018 IPR029017 Enolase-like, N-terminal Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 Pfam PF03952 Enolase, N-terminal domain 4 133 1.1E-58 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 Hamap MF_00318 Enolase [eno]. 2 412 45.345 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 424 7.9E-134 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 PIRSF PIRSF001400 1 426 3.0E-193 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 ProSitePatterns PS00164 Enolase signature. 335 348 - T 12-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 SUPERFAMILY SSF51604 140 427 2.18E-130 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 SMART SM01193 4 134 1.4E-94 T 12-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 SUPERFAMILY SSF54826 4 138 2.09E-56 T 12-10-2018 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 426 1.3E-208 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 SMART SM01192 139 426 3.1E-222 T 12-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 PRINTS PR00148 Enolase signature 335 349 1.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 PRINTS PR00148 Enolase signature 37 51 1.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 PRINTS PR00148 Enolase signature 107 123 1.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 PRINTS PR00148 Enolase signature 161 174 1.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 PRINTS PR00148 Enolase signature 312 323 1.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_1091 de70bce6c50eab0144d5fa8bdee35cb4 428 PRINTS PR00148 Enolase signature 364 381 1.9E-45 T 12-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Alide_0148 7ab214accc33197651ae4e2bbc2064f3 138 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 57 122 3.8E-24 T 12-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Alide_0148 7ab214accc33197651ae4e2bbc2064f3 138 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 20 55 4.1E-14 T 12-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Alide_0148 7ab214accc33197651ae4e2bbc2064f3 138 SUPERFAMILY SSF50249 5 129 9.59E-40 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0369 495e460d3f9b4cc2d9de58dd060ad9d1 346 SUPERFAMILY SSF56112 7 332 2.96E-63 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_0369 495e460d3f9b4cc2d9de58dd060ad9d1 346 Gene3D G3DSA:3.90.1200.10 110 343 8.5E-95 T 12-10-2018 Alide_0369 495e460d3f9b4cc2d9de58dd060ad9d1 346 Gene3D G3DSA:3.30.200.20 8 109 1.8E-35 T 12-10-2018 Alide_0369 495e460d3f9b4cc2d9de58dd060ad9d1 346 Pfam PF01636 Phosphotransferase enzyme family 30 251 1.6E-57 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase Alide_3650 b03382c0ce18a042d2875508ff2a3e02 239 Pfam PF13098 Thioredoxin-like domain 110 230 2.9E-31 T 12-10-2018 IPR012336 Thioredoxin-like fold Alide_3650 b03382c0ce18a042d2875508ff2a3e02 239 Gene3D G3DSA:3.40.30.10 106 235 3.4E-38 T 12-10-2018 Alide_3650 b03382c0ce18a042d2875508ff2a3e02 239 ProSitePatterns PS00194 Thioredoxin family active site. 117 135 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Alide_3650 b03382c0ce18a042d2875508ff2a3e02 239 SUPERFAMILY SSF52833 80 231 9.36E-32 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3650 b03382c0ce18a042d2875508ff2a3e02 239 SUPERFAMILY SSF54423 24 80 9.42E-11 T 12-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 Alide_3650 b03382c0ce18a042d2875508ff2a3e02 239 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 81 2.0E-20 T 12-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal Alide_3650 b03382c0ce18a042d2875508ff2a3e02 239 Gene3D G3DSA:3.10.450.70 19 84 1.9E-11 T 12-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 SUPERFAMILY SSF68912 1 46 1.45E-10 T 12-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 2.9E-13 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 SUPERFAMILY SSF50249 49 125 1.16E-27 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 Gene3D G3DSA:3.40.50.300 130 417 2.9E-127 T 12-10-2018 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 Gene3D G3DSA:1.10.720.10 1 46 3.2E-15 T 12-10-2018 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 239.424 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 1.2E-29 T 12-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 3.2E-207 T 12-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 SUPERFAMILY SSF52540 90 371 5.46E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 SMART SM00959 5 47 1.4E-14 T 12-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 SMART SM00382 170 349 2.4E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 5.3E-22 T 12-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 Gene3D G3DSA:2.40.50.140 47 123 3.7E-32 T 12-10-2018 Alide_2480 d4481adcecbed70da8ff3c1808c4f803 420 SMART SM00357 52 118 4.9E-16 T 12-10-2018 IPR011129 Cold shock domain GO:0003676 Alide_2600 614057412a10f44b570b2a84ffd6ab51 307 SUPERFAMILY SSF103481 49 150 1.2E-18 T 12-10-2018 Alide_2600 614057412a10f44b570b2a84ffd6ab51 307 Pfam PF00892 EamA-like transporter family 21 147 1.3E-20 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_2600 614057412a10f44b570b2a84ffd6ab51 307 Pfam PF00892 EamA-like transporter family 163 295 3.9E-17 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_2600 614057412a10f44b570b2a84ffd6ab51 307 SUPERFAMILY SSF103481 200 295 1.57E-13 T 12-10-2018 Alide_0154 9c787c4feb8b99ed37f8e1e2f058faa2 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 324 6.4E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0154 9c787c4feb8b99ed37f8e1e2f058faa2 327 SUPERFAMILY SSF53850 123 290 4.1E-17 T 12-10-2018 Alide_0154 9c787c4feb8b99ed37f8e1e2f058faa2 327 Gene3D G3DSA:3.40.190.10 130 253 1.9E-100 T 12-10-2018 Alide_0154 9c787c4feb8b99ed37f8e1e2f058faa2 327 PIRSF PIRSF017082 1 326 6.3E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0154 9c787c4feb8b99ed37f8e1e2f058faa2 327 Gene3D G3DSA:3.40.190.150 34 318 1.9E-100 T 12-10-2018 Alide_4412 b5d25659369e7474a3c5ec937d5ca2f8 514 Gene3D G3DSA:3.40.190.10 187 498 1.6E-160 T 12-10-2018 Alide_4412 b5d25659369e7474a3c5ec937d5ca2f8 514 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 430 3.9E-98 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain Alide_4412 b5d25659369e7474a3c5ec937d5ca2f8 514 Gene3D G3DSA:3.10.105.10 262 488 1.6E-160 T 12-10-2018 Alide_4412 b5d25659369e7474a3c5ec937d5ca2f8 514 PIRSF PIRSF002741 11 514 1.2E-116 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Alide_4412 b5d25659369e7474a3c5ec937d5ca2f8 514 Gene3D G3DSA:3.90.76.10 37 186 1.6E-160 T 12-10-2018 Alide_4412 b5d25659369e7474a3c5ec937d5ca2f8 514 SUPERFAMILY SSF53850 31 511 2.86E-141 T 12-10-2018 Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SMART SM00086 436 477 7.1E-4 T 12-10-2018 IPR001610 PAC motif Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SMART SM01079 78 276 2.5E-44 T 12-10-2018 IPR006189 CHASE domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 Pfam PF00990 Diguanylate cyclase, GGDEF domain 616 778 1.8E-45 T 12-10-2018 IPR000160 GGDEF domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 Gene3D G3DSA:3.30.450.350 83 300 8.7E-21 T 12-10-2018 Alide_2247 eee3aedec0d4240828a18031381f6270 1058 Gene3D G3DSA:3.30.450.20 349 474 7.6E-24 T 12-10-2018 Alide_2247 eee3aedec0d4240828a18031381f6270 1058 Gene3D G3DSA:3.30.450.20 475 601 7.6E-10 T 12-10-2018 Alide_2247 eee3aedec0d4240828a18031381f6270 1058 Pfam PF00563 EAL domain 800 1033 3.4E-68 T 12-10-2018 IPR001633 EAL domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SMART SM00052 793 1038 5.8E-116 T 12-10-2018 IPR001633 EAL domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 615 781 1.3E-38 T 12-10-2018 IPR000160 GGDEF domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 Pfam PF03924 CHASE domain 81 264 8.3E-40 T 12-10-2018 IPR006189 CHASE domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SUPERFAMILY SSF55073 621 785 2.28E-45 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SMART SM00091 362 429 7.1E-8 T 12-10-2018 IPR000014 PAS domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SMART SM00091 489 555 5.6 T 12-10-2018 IPR000014 PAS domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SMART SM00267 605 783 3.0E-60 T 12-10-2018 IPR000160 GGDEF domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SUPERFAMILY SSF55785 474 594 8.03E-11 T 12-10-2018 IPR035965 PAS domain superfamily Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SUPERFAMILY SSF141868 799 1046 2.22E-84 T 12-10-2018 IPR035919 EAL domain superfamily Alide_2247 eee3aedec0d4240828a18031381f6270 1058 SUPERFAMILY SSF55785 349 474 5.06E-23 T 12-10-2018 IPR035965 PAS domain superfamily Alide_2247 eee3aedec0d4240828a18031381f6270 1058 Gene3D G3DSA:3.30.70.270 610 795 4.5E-57 T 12-10-2018 Alide_2247 eee3aedec0d4240828a18031381f6270 1058 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 358 484 2.7E-26 T 12-10-2018 IPR000014 PAS domain Alide_2247 eee3aedec0d4240828a18031381f6270 1058 Gene3D G3DSA:3.20.20.450 796 1047 1.2E-93 T 12-10-2018 IPR035919 EAL domain superfamily Alide_2247 eee3aedec0d4240828a18031381f6270 1058 Pfam PF13426 PAS domain 374 475 1.9E-9 T 12-10-2018 IPR000014 PAS domain Alide_1485 52910767b04310392b85415409794517 902 Gene3D G3DSA:1.25.50.10 563 901 3.3E-109 T 12-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily Alide_1485 52910767b04310392b85415409794517 902 Gene3D G3DSA:1.10.1740.60 200 283 1.2E-30 T 12-10-2018 Alide_1485 52910767b04310392b85415409794517 902 SUPERFAMILY SSF63737 7 196 1.57E-41 T 12-10-2018 Alide_1485 52910767b04310392b85415409794517 902 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 262 272 2.3E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Alide_1485 52910767b04310392b85415409794517 902 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 180 195 2.3E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Alide_1485 52910767b04310392b85415409794517 902 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 130 145 2.3E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Alide_1485 52910767b04310392b85415409794517 902 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 298 313 2.3E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Alide_1485 52910767b04310392b85415409794517 902 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 317 329 2.3E-9 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Alide_1485 52910767b04310392b85415409794517 902 Gene3D G3DSA:1.10.390.10 284 456 1.6E-62 T 12-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily Alide_1485 52910767b04310392b85415409794517 902 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 900 0.0 T 12-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 Alide_1485 52910767b04310392b85415409794517 902 Gene3D G3DSA:2.60.40.1730 16 198 4.8E-71 T 12-10-2018 Alide_1485 52910767b04310392b85415409794517 902 SUPERFAMILY SSF55486 213 462 2.32E-70 T 12-10-2018 Alide_1485 52910767b04310392b85415409794517 902 Gene3D G3DSA:2.60.40.1840 457 562 1.4E-31 T 12-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily Alide_1485 52910767b04310392b85415409794517 902 Pfam PF01433 Peptidase family M1 domain 215 437 4.6E-51 T 12-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Alide_1485 52910767b04310392b85415409794517 902 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 565 901 2.0E-116 T 12-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal Alide_1485 52910767b04310392b85415409794517 902 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 457 560 3.2E-27 T 12-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold Alide_1349 06eb6f87420f469c0e16699179eb2213 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 32 304 2.2E-33 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_2231 13923a9bd8bb56227ed495d0039a1bc5 322 Gene3D G3DSA:3.40.190.150 24 312 8.5E-109 T 12-10-2018 Alide_2231 13923a9bd8bb56227ed495d0039a1bc5 322 SUPERFAMILY SSF53850 105 284 1.47E-12 T 12-10-2018 Alide_2231 13923a9bd8bb56227ed495d0039a1bc5 322 Gene3D G3DSA:3.40.190.10 121 247 8.5E-109 T 12-10-2018 Alide_2231 13923a9bd8bb56227ed495d0039a1bc5 322 PIRSF PIRSF017082 1 321 3.8E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2231 13923a9bd8bb56227ed495d0039a1bc5 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 44 317 7.1E-86 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4065 7ce62846afd119d0a3430fe8307d44ed 357 SUPERFAMILY SSF111369 43 111 6.93E-7 T 12-10-2018 Alide_4065 7ce62846afd119d0a3430fe8307d44ed 357 Gene3D G3DSA:2.40.30.170 251 300 5.7E-17 T 12-10-2018 Alide_4065 7ce62846afd119d0a3430fe8307d44ed 357 SUPERFAMILY SSF111369 116 300 1.44E-8 T 12-10-2018 Alide_4065 7ce62846afd119d0a3430fe8307d44ed 357 Pfam PF13437 HlyD family secretion protein 216 321 3.9E-12 T 12-10-2018 Alide_4065 7ce62846afd119d0a3430fe8307d44ed 357 Gene3D G3DSA:1.10.287.470 83 111 1.7E-9 T 12-10-2018 Alide_4065 7ce62846afd119d0a3430fe8307d44ed 357 Gene3D G3DSA:2.40.50.100 216 250 5.7E-17 T 12-10-2018 Alide_4065 7ce62846afd119d0a3430fe8307d44ed 357 Gene3D G3DSA:1.10.287.470 112 187 6.0E-8 T 12-10-2018 Alide_4065 7ce62846afd119d0a3430fe8307d44ed 357 Gene3D G3DSA:1.10.287.470 188 215 5.7E-17 T 12-10-2018 Alide_4065 7ce62846afd119d0a3430fe8307d44ed 357 Gene3D G3DSA:2.40.50.100 48 82 1.7E-9 T 12-10-2018 Alide_0400 52e2bd62f855ea71e7b8c9a98210eabf 240 SUPERFAMILY SSF55681 17 230 1.49E-26 T 12-10-2018 Alide_0400 52e2bd62f855ea71e7b8c9a98210eabf 240 Gene3D G3DSA:3.30.930.10 2 234 8.9E-27 T 12-10-2018 Alide_2588 603f028b7ebbe4175263d21db1f4b981 224 Pfam PF07729 FCD domain 90 211 8.6E-14 T 12-10-2018 IPR011711 GntR, C-terminal Alide_2588 603f028b7ebbe4175263d21db1f4b981 224 SUPERFAMILY SSF48008 87 220 1.1E-12 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2588 603f028b7ebbe4175263d21db1f4b981 224 SMART SM00345 22 80 6.6E-11 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2588 603f028b7ebbe4175263d21db1f4b981 224 Gene3D G3DSA:1.10.10.10 3 81 1.3E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2588 603f028b7ebbe4175263d21db1f4b981 224 Gene3D G3DSA:1.20.120.530 86 218 3.1E-14 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2588 603f028b7ebbe4175263d21db1f4b981 224 SMART SM00895 90 213 6.1E-8 T 12-10-2018 IPR011711 GntR, C-terminal Alide_2588 603f028b7ebbe4175263d21db1f4b981 224 SUPERFAMILY SSF46785 15 84 9.25E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2588 603f028b7ebbe4175263d21db1f4b981 224 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 80 1.6E-12 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 Gene3D G3DSA:3.50.50.60 13 317 2.8E-84 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 297 3.5E-12 T 12-10-2018 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 117 135 3.5E-12 T 12-10-2018 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 161 179 3.5E-12 T 12-10-2018 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 248 264 3.5E-12 T 12-10-2018 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 3.5E-12 T 12-10-2018 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 SUPERFAMILY SSF51905 138 256 1.68E-8 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 SUPERFAMILY SSF51905 11 321 1.53E-29 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 Gene3D G3DSA:3.50.50.60 133 255 2.8E-84 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 Hamap MF_01685 Ferredoxin--NADP reductase. 11 337 35.119 T 12-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 300 3.0E-20 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 13 35 4.2E-9 T 12-10-2018 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 290 297 4.2E-9 T 12-10-2018 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 249 263 4.2E-9 T 12-10-2018 Alide_1789 e2f1679e6cf717bc8f72d5f49a78a89d 348 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 161 186 4.2E-9 T 12-10-2018 Alide_2822 3dbc43f82d380960544771df228d667b 75 Gene3D G3DSA:3.30.110.40 2 75 3.6E-28 T 12-10-2018 IPR036868 TusA-like domain superfamily Alide_2822 3dbc43f82d380960544771df228d667b 75 Pfam PF01206 Sulfurtransferase TusA 5 73 6.3E-23 T 12-10-2018 IPR001455 TusA-like domain Alide_2822 3dbc43f82d380960544771df228d667b 75 SUPERFAMILY SSF64307 3 74 6.28E-24 T 12-10-2018 IPR036868 TusA-like domain superfamily Alide_2822 3dbc43f82d380960544771df228d667b 75 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 7 31 - T 12-10-2018 IPR001455 TusA-like domain Alide_3414 587e0519924f5c1aff28b045f19b0ed5 550 Gene3D G3DSA:3.40.50.970 325 520 1.6E-47 T 12-10-2018 Alide_3414 587e0519924f5c1aff28b045f19b0ed5 550 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 166 3.8E-35 T 12-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Alide_3414 587e0519924f5c1aff28b045f19b0ed5 550 SUPERFAMILY SSF52518 335 516 2.32E-43 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_3414 587e0519924f5c1aff28b045f19b0ed5 550 SUPERFAMILY SSF52467 171 229 8.41E-5 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_3414 587e0519924f5c1aff28b045f19b0ed5 550 Gene3D G3DSA:3.40.50.970 1 172 8.6E-39 T 12-10-2018 Alide_3414 587e0519924f5c1aff28b045f19b0ed5 550 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 375 511 4.2E-28 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Alide_3414 587e0519924f5c1aff28b045f19b0ed5 550 SUPERFAMILY SSF52518 1 180 5.89E-37 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_4003 bf7515230a7ae6fda11d608197825e0d 150 PIRSF PIRSF002070 1 149 1.5E-22 T 12-10-2018 Alide_4003 bf7515230a7ae6fda11d608197825e0d 150 Gene3D G3DSA:2.40.50.140 3 149 1.1E-21 T 12-10-2018 Alide_4003 bf7515230a7ae6fda11d608197825e0d 150 Pfam PF00436 Single-strand binding protein family 9 109 1.2E-11 T 12-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Alide_4003 bf7515230a7ae6fda11d608197825e0d 150 SUPERFAMILY SSF50249 3 136 1.37E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_2147 3a5f82f8b65666e519bd8309598eac14 233 Pfam PF00043 Glutathione S-transferase, C-terminal domain 132 197 7.1E-10 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal Alide_2147 3a5f82f8b65666e519bd8309598eac14 233 Gene3D G3DSA:3.40.30.10 1 90 9.9E-31 T 12-10-2018 Alide_2147 3a5f82f8b65666e519bd8309598eac14 233 SUPERFAMILY SSF47616 78 208 2.18E-36 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_2147 3a5f82f8b65666e519bd8309598eac14 233 Gene3D G3DSA:1.20.1050.10 91 228 1.3E-50 T 12-10-2018 Alide_2147 3a5f82f8b65666e519bd8309598eac14 233 SUPERFAMILY SSF52833 1 84 2.6E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2147 3a5f82f8b65666e519bd8309598eac14 233 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 80 3.3E-14 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_1587 2e585ae8357e5b73e90b611e9627e137 683 Pfam PF00593 TonB dependent receptor 350 682 1.0E-36 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_1587 2e585ae8357e5b73e90b611e9627e137 683 Pfam PF07715 TonB-dependent Receptor Plug Domain 55 158 3.9E-17 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_1587 2e585ae8357e5b73e90b611e9627e137 683 Gene3D G3DSA:2.170.130.10 39 167 3.6E-27 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_1587 2e585ae8357e5b73e90b611e9627e137 683 SUPERFAMILY SSF56935 41 683 2.66E-88 T 12-10-2018 Alide_1587 2e585ae8357e5b73e90b611e9627e137 683 Gene3D G3DSA:2.40.170.20 171 683 1.8E-58 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Alide_2358 75c6d49c520144c6461bd2ef21857c54 318 SUPERFAMILY SSF51412 8 306 4.03E-57 T 12-10-2018 Alide_2358 75c6d49c520144c6461bd2ef21857c54 318 Pfam PF03060 Nitronate monooxygenase 86 304 1.5E-19 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Alide_2358 75c6d49c520144c6461bd2ef21857c54 318 Gene3D G3DSA:3.20.20.70 6 317 2.2E-59 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3261 19a5d6529d80da59a339d364a6118c3e 158 Gene3D G3DSA:3.90.1170.40 1 149 5.2E-49 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 Alide_3261 19a5d6529d80da59a339d364a6118c3e 158 SUPERFAMILY SSF54690 4 149 7.45E-51 T 12-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 Alide_3261 19a5d6529d80da59a339d364a6118c3e 158 Pfam PF02391 MoaE protein 6 120 1.3E-35 T 12-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 Alide_4171 d1efcca34a81efa9e13ddbab83cf987b 114 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 8 94 9.7E-7 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Alide_4171 d1efcca34a81efa9e13ddbab83cf987b 114 SUPERFAMILY SSF69754 1 94 2.35E-7 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 SUPERFAMILY SSF50447 257 395 6.63E-28 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 1 531 48.535 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 SUPERFAMILY SSF52540 7 273 4.53E-85 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 150 3.2E-23 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 55 70 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 PRINTS PR00315 GTP-binding elongation factor signature 82 92 1.8E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 PRINTS PR00315 GTP-binding elongation factor signature 134 143 1.8E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 PRINTS PR00315 GTP-binding elongation factor signature 98 109 1.8E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.8E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 PRINTS PR00315 GTP-binding elongation factor signature 62 70 1.8E-11 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 533 1.7E-198 T 12-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 Gene3D G3DSA:3.40.50.300 18 271 1.1E-103 T 12-10-2018 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 Gene3D G3DSA:3.30.70.3280 394 533 3.2E-47 T 12-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 Pfam PF00009 Elongation factor Tu GTP binding domain 9 273 5.9E-51 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 Pfam PF16658 Class II release factor RF3, C-terminal domain 391 518 3.7E-42 T 12-10-2018 IPR032090 Peptide chain release factor 3, C-terminal Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 Gene3D G3DSA:3.40.50.300 11 382 1.1E-103 T 12-10-2018 Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 SUPERFAMILY SSF54980 396 469 9.71E-17 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_0700 3539ad998a153eb00ceb0145e2231a9b 541 Pfam PF03144 Elongation factor Tu domain 2 318 384 6.2E-10 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Alide_2596 c4dc1293196a8381e2cccf45f04b8876 651 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 13 336 6.1E-110 T 12-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 Alide_2596 c4dc1293196a8381e2cccf45f04b8876 651 Gene3D G3DSA:3.40.1190.20 17 319 2.1E-82 T 12-10-2018 IPR029056 Ribokinase-like Alide_2596 c4dc1293196a8381e2cccf45f04b8876 651 Gene3D G3DSA:3.20.20.70 347 645 1.7E-43 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2596 c4dc1293196a8381e2cccf45f04b8876 651 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 281 294 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Alide_2596 c4dc1293196a8381e2cccf45f04b8876 651 SUPERFAMILY SSF53613 12 336 2.03E-66 T 12-10-2018 IPR029056 Ribokinase-like Alide_2596 c4dc1293196a8381e2cccf45f04b8876 651 Gene3D G3DSA:2.20.150.10 21 116 2.1E-82 T 12-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 Alide_2596 c4dc1293196a8381e2cccf45f04b8876 651 Pfam PF00294 pfkB family carbohydrate kinase 13 329 3.5E-43 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB Alide_2596 c4dc1293196a8381e2cccf45f04b8876 651 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 332 641 1.1E-127 T 12-10-2018 IPR018659 Protein of unknown function DUF2090 Alide_1567 561ad55968a7fe385f600e732ba9f7db 266 SUPERFAMILY SSF161098 65 251 7.59E-36 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1567 561ad55968a7fe385f600e732ba9f7db 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 256 1.9E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1567 561ad55968a7fe385f600e732ba9f7db 266 Gene3D G3DSA:1.10.3720.10 52 265 3.5E-42 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1567 561ad55968a7fe385f600e732ba9f7db 266 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 63 160 2.9E-19 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_0165 f158bd840f1cb6650692eaaefd1c5d33 297 Pfam PF01575 MaoC like domain 173 274 6.8E-25 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_0165 f158bd840f1cb6650692eaaefd1c5d33 297 Gene3D G3DSA:3.10.129.10 15 297 3.6E-81 T 12-10-2018 Alide_0165 f158bd840f1cb6650692eaaefd1c5d33 297 SUPERFAMILY SSF54637 176 290 1.74E-27 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0165 f158bd840f1cb6650692eaaefd1c5d33 297 SUPERFAMILY SSF54637 10 159 9.05E-40 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0165 f158bd840f1cb6650692eaaefd1c5d33 297 Pfam PF13452 N-terminal half of MaoC dehydratase 52 139 5.5E-12 T 12-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Alide_1000 56861c349ef8ab3980dbe249fe6660ff 277 Gene3D G3DSA:3.40.190.10 128 218 8.2E-61 T 12-10-2018 Alide_1000 56861c349ef8ab3980dbe249fe6660ff 277 SUPERFAMILY SSF53850 13 259 4.71E-56 T 12-10-2018 Alide_1000 56861c349ef8ab3980dbe249fe6660ff 277 SMART SM00062 40 261 2.0E-54 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1000 56861c349ef8ab3980dbe249fe6660ff 277 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 64 77 - T 12-10-2018 IPR018313 Solute-binding protein family 3, conserved site Alide_1000 56861c349ef8ab3980dbe249fe6660ff 277 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 259 2.5E-54 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1000 56861c349ef8ab3980dbe249fe6660ff 277 Gene3D G3DSA:3.40.190.10 30 260 8.2E-61 T 12-10-2018 Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 SUPERFAMILY SSF111369 121 178 4.05E-5 T 12-10-2018 Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 39 298 1.0E-13 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 Gene3D G3DSA:1.10.287.470 181 213 1.3E-20 T 12-10-2018 Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 Gene3D G3DSA:2.40.50.100 50 83 2.9E-15 T 12-10-2018 Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 Gene3D G3DSA:1.10.287.470 118 179 3.0E-10 T 12-10-2018 Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 Gene3D G3DSA:2.40.50.100 214 248 1.3E-20 T 12-10-2018 Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 Gene3D G3DSA:2.40.30.170 249 333 1.3E-20 T 12-10-2018 Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 SUPERFAMILY SSF111369 49 117 5.75E-9 T 12-10-2018 Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 SUPERFAMILY SSF111369 183 296 7.19E-9 T 12-10-2018 Alide_2848 964eabd0fc07e1922fdf6df2bff19181 346 Gene3D G3DSA:1.10.287.470 84 117 2.9E-15 T 12-10-2018 Alide_4496 3b27b10ddbcb0993db806be5e4d21cd2 204 SUPERFAMILY SSF46689 145 187 1.33E-5 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4496 3b27b10ddbcb0993db806be5e4d21cd2 204 SUPERFAMILY SSF53041 1 142 8.37E-41 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Alide_4496 3b27b10ddbcb0993db806be5e4d21cd2 204 Pfam PF00239 Resolvase, N terminal domain 3 143 1.0E-41 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_4496 3b27b10ddbcb0993db806be5e4d21cd2 204 ProSitePatterns PS00398 Site-specific recombinases signature 2. 59 71 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Alide_4496 3b27b10ddbcb0993db806be5e4d21cd2 204 Gene3D G3DSA:3.40.50.1390 1 132 6.8E-43 T 12-10-2018 Alide_4496 3b27b10ddbcb0993db806be5e4d21cd2 204 SMART SM00857 2 143 2.3E-53 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_0958 813f08412b432815e48f26ded59c552c 93 SMART SM00834 1 42 6.2E-18 T 12-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Alide_0958 813f08412b432815e48f26ded59c552c 93 Pfam PF09723 Zinc ribbon domain 1 40 2.0E-16 T 12-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Alide_0958 813f08412b432815e48f26ded59c552c 93 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 5.5E-22 T 12-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Alide_4420 172f59e9958f13bd3258415819c87da5 97 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 69 2.0E-21 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Alide_4420 172f59e9958f13bd3258415819c87da5 97 SMART SM01234 2 69 3.4E-40 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Alide_4420 172f59e9958f13bd3258415819c87da5 97 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 2 70 23.053 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Alide_4420 172f59e9958f13bd3258415819c87da5 97 Pfam PF01809 Haemolytic domain 4 69 1.3E-26 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Alide_4420 172f59e9958f13bd3258415819c87da5 97 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 6 75 1.7E-26 T 12-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Alide_1807 0f63e0b4cb101894308186fb1b88caf4 398 SUPERFAMILY SSF53822 35 373 4.37E-81 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_1807 0f63e0b4cb101894308186fb1b88caf4 398 Gene3D G3DSA:3.40.50.2300 151 370 7.0E-82 T 12-10-2018 Alide_1807 0f63e0b4cb101894308186fb1b88caf4 398 Pfam PF13458 Periplasmic binding protein 36 371 1.6E-67 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_1807 0f63e0b4cb101894308186fb1b88caf4 398 Gene3D G3DSA:3.40.50.2300 55 362 7.0E-82 T 12-10-2018 Alide_4261 36420c32ec4e2b901910db14e727d0a7 262 SUPERFAMILY SSF56281 3 239 1.44E-37 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_4261 36420c32ec4e2b901910db14e727d0a7 262 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 49 67 3.3E-10 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 Alide_4261 36420c32ec4e2b901910db14e727d0a7 262 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 200 213 3.3E-10 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 Alide_4261 36420c32ec4e2b901910db14e727d0a7 262 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 81 102 3.3E-10 T 12-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 Alide_4261 36420c32ec4e2b901910db14e727d0a7 262 Pfam PF12706 Beta-lactamase superfamily domain 26 218 1.5E-15 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_4261 36420c32ec4e2b901910db14e727d0a7 262 Gene3D G3DSA:3.60.15.10 2 260 2.3E-29 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_4261 36420c32ec4e2b901910db14e727d0a7 262 SMART SM00849 17 190 3.6E-8 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_0196 0a7b6a2e88e7bd4bce5c5ec8638326dc 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 3.6E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0196 0a7b6a2e88e7bd4bce5c5ec8638326dc 305 SUPERFAMILY SSF53850 92 299 6.92E-44 T 12-10-2018 Alide_0196 0a7b6a2e88e7bd4bce5c5ec8638326dc 305 SUPERFAMILY SSF46785 3 115 1.4E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0196 0a7b6a2e88e7bd4bce5c5ec8638326dc 305 Gene3D G3DSA:3.40.190.290 95 300 1.9E-40 T 12-10-2018 Alide_0196 0a7b6a2e88e7bd4bce5c5ec8638326dc 305 Pfam PF03466 LysR substrate binding domain 92 295 3.5E-40 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0196 0a7b6a2e88e7bd4bce5c5ec8638326dc 305 Gene3D G3DSA:1.10.10.10 5 94 6.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 SUPERFAMILY SSF141868 346 590 2.22E-95 T 12-10-2018 IPR035919 EAL domain superfamily Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 Pfam PF00990 Diguanylate cyclase, GGDEF domain 170 326 6.8E-51 T 12-10-2018 IPR000160 GGDEF domain Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 Pfam PF00563 EAL domain 346 581 1.7E-79 T 12-10-2018 IPR001633 EAL domain Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 SMART SM00267 159 330 2.0E-68 T 12-10-2018 IPR000160 GGDEF domain Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 SUPERFAMILY SSF55073 175 332 2.51E-53 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 SMART SM00052 340 586 4.5E-128 T 12-10-2018 IPR001633 EAL domain Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 Gene3D G3DSA:3.30.450.20 23 139 1.1E-22 T 12-10-2018 Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 168 328 1.2E-46 T 12-10-2018 IPR000160 GGDEF domain Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 Gene3D G3DSA:3.30.70.270 164 342 1.6E-64 T 12-10-2018 Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 Gene3D G3DSA:3.20.20.450 343 592 1.7E-108 T 12-10-2018 IPR035919 EAL domain superfamily Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 SUPERFAMILY SSF55785 16 134 1.47E-12 T 12-10-2018 IPR035965 PAS domain superfamily Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 Pfam PF13426 PAS domain 35 134 1.6E-6 T 12-10-2018 IPR000014 PAS domain Alide_2495 c5d86423472af546f2ee02e19184b1f9 597 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 27 141 4.3E-9 T 12-10-2018 IPR000014 PAS domain Alide_2428 e02522b60b087dbb7be587f6680a64ae 235 SMART SM00882 5 217 7.5E-95 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Alide_2428 e02522b60b087dbb7be587f6680a64ae 235 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 2 216 2.4E-76 T 12-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 Alide_2428 e02522b60b087dbb7be587f6680a64ae 235 SUPERFAMILY SSF100950 2 228 8.97E-90 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_2428 e02522b60b087dbb7be587f6680a64ae 235 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 12-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 Alide_2428 e02522b60b087dbb7be587f6680a64ae 235 Gene3D G3DSA:3.40.1080.10 1 227 8.3E-98 T 12-10-2018 Alide_2428 e02522b60b087dbb7be587f6680a64ae 235 Pfam PF01144 Coenzyme A transferase 7 217 7.3E-79 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Alide_1743 266736b6468bcc4ac88d1a0525f10fcb 389 Pfam PF04055 Radical SAM superfamily 54 223 5.0E-30 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_1743 266736b6468bcc4ac88d1a0525f10fcb 389 Pfam PF13353 4Fe-4S single cluster domain 58 148 1.0E-7 T 12-10-2018 Alide_1743 266736b6468bcc4ac88d1a0525f10fcb 389 SUPERFAMILY SSF102114 42 350 1.28E-71 T 12-10-2018 Alide_1743 266736b6468bcc4ac88d1a0525f10fcb 389 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 56 67 - T 12-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_1743 266736b6468bcc4ac88d1a0525f10fcb 389 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 41 389 40.706 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_1743 266736b6468bcc4ac88d1a0525f10fcb 389 SMART SM00729 50 263 8.6E-13 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Alide_1743 266736b6468bcc4ac88d1a0525f10fcb 389 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 41 389 3.7E-113 T 12-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_1743 266736b6468bcc4ac88d1a0525f10fcb 389 Gene3D G3DSA:3.20.20.70 38 389 1.2E-92 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1743 266736b6468bcc4ac88d1a0525f10fcb 389 Pfam PF06463 Molybdenum Cofactor Synthesis C 230 364 3.8E-33 T 12-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_1778 4f5690871e4d003c834894d618c51c46 239 SMART SM00100 19 137 1.0E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_1778 4f5690871e4d003c834894d618c51c46 239 Pfam PF13545 Crp-like helix-turn-helix domain 158 234 1.2E-14 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_1778 4f5690871e4d003c834894d618c51c46 239 Gene3D G3DSA:1.10.10.10 155 236 2.7E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1778 4f5690871e4d003c834894d618c51c46 239 Gene3D G3DSA:2.60.120.10 7 153 4.7E-28 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1778 4f5690871e4d003c834894d618c51c46 239 SUPERFAMILY SSF46785 156 235 1.99E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1778 4f5690871e4d003c834894d618c51c46 239 SMART SM00419 179 227 1.7E-5 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_1778 4f5690871e4d003c834894d618c51c46 239 SUPERFAMILY SSF51206 13 150 1.44E-31 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_1778 4f5690871e4d003c834894d618c51c46 239 Pfam PF00027 Cyclic nucleotide-binding domain 38 125 2.9E-17 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_4572 3dc4c66ba8d83588feb1b6dc57babc0a 219 Pfam PF00589 Phage integrase family 6 202 2.8E-13 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_4572 3dc4c66ba8d83588feb1b6dc57babc0a 219 SUPERFAMILY SSF56349 3 215 2.06E-23 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_4572 3dc4c66ba8d83588feb1b6dc57babc0a 219 Gene3D G3DSA:1.10.443.10 4 206 1.4E-21 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_1524 5d73cdfcdc14b6b73f12666bf675b60e 270 Gene3D G3DSA:3.30.420.10 103 250 3.9E-18 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1524 5d73cdfcdc14b6b73f12666bf675b60e 270 Pfam PF13683 Integrase core domain 192 257 4.0E-27 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_1524 5d73cdfcdc14b6b73f12666bf675b60e 270 SUPERFAMILY SSF53098 101 262 2.28E-39 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_3770 5d73cdfcdc14b6b73f12666bf675b60e 270 Gene3D G3DSA:3.30.420.10 103 250 3.9E-18 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_3770 5d73cdfcdc14b6b73f12666bf675b60e 270 Pfam PF13683 Integrase core domain 192 257 4.0E-27 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_3770 5d73cdfcdc14b6b73f12666bf675b60e 270 SUPERFAMILY SSF53098 101 262 2.28E-39 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_3686 5d73cdfcdc14b6b73f12666bf675b60e 270 Gene3D G3DSA:3.30.420.10 103 250 3.9E-18 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_3686 5d73cdfcdc14b6b73f12666bf675b60e 270 Pfam PF13683 Integrase core domain 192 257 4.0E-27 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_3686 5d73cdfcdc14b6b73f12666bf675b60e 270 SUPERFAMILY SSF53098 101 262 2.28E-39 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_4402 30a88c29e96375f23b8ff806b8a631ec 161 SUPERFAMILY SSF51206 30 140 3.01E-24 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_4402 30a88c29e96375f23b8ff806b8a631ec 161 Gene3D G3DSA:2.60.120.10 27 160 5.4E-28 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_4402 30a88c29e96375f23b8ff806b8a631ec 161 SMART SM00100 27 144 1.2E-14 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_4402 30a88c29e96375f23b8ff806b8a631ec 161 Pfam PF00027 Cyclic nucleotide-binding domain 46 131 3.0E-19 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_1474 98ec1c2312a8334fbad4459eb16fa80b 332 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 91 1.2E-23 T 12-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 Alide_1474 98ec1c2312a8334fbad4459eb16fa80b 332 Gene3D G3DSA:2.160.10.10 97 293 3.2E-55 T 12-10-2018 Alide_1474 98ec1c2312a8334fbad4459eb16fa80b 332 Gene3D G3DSA:3.40.1390.10 1 96 3.2E-25 T 12-10-2018 Alide_1474 98ec1c2312a8334fbad4459eb16fa80b 332 SUPERFAMILY SSF51161 32 302 6.99E-68 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily Alide_1474 98ec1c2312a8334fbad4459eb16fa80b 332 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 8 312 32.465 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Alide_1474 98ec1c2312a8334fbad4459eb16fa80b 332 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 245 278 0.0063 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_1474 98ec1c2312a8334fbad4459eb16fa80b 332 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 7 315 1.7E-96 T 12-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Alide_1474 98ec1c2312a8334fbad4459eb16fa80b 332 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 131 165 8.1E-6 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_1474 98ec1c2312a8334fbad4459eb16fa80b 332 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 208 241 2.0E-4 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 5.3E-39 T 12-10-2018 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 5.3E-39 T 12-10-2018 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 5.3E-39 T 12-10-2018 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 5.3E-39 T 12-10-2018 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 5.3E-39 T 12-10-2018 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 Gene3D G3DSA:3.50.50.60 11 312 2.0E-122 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 4.9E-47 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 8.4E-118 T 12-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 2.0E-72 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 2.0E-72 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 2.0E-72 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 2.0E-72 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 2.0E-72 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 2.0E-72 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 2.0E-72 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 2.0E-72 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 2.0E-72 T 12-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 12-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 SUPERFAMILY SSF51905 1 313 3.89E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1187 79153fad4e2b1ca8763014e1579bc43a 316 Gene3D G3DSA:3.50.50.60 118 244 2.0E-122 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2849 0586b8f9d0caade8cd4f923b6cfaf389 590 Pfam PF00005 ABC transporter 35 177 1.5E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2849 0586b8f9d0caade8cd4f923b6cfaf389 590 SMART SM00382 44 225 4.1E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2849 0586b8f9d0caade8cd4f923b6cfaf389 590 SMART SM00382 365 555 3.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2849 0586b8f9d0caade8cd4f923b6cfaf389 590 SUPERFAMILY SSF52540 20 240 1.15E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2849 0586b8f9d0caade8cd4f923b6cfaf389 590 Gene3D G3DSA:3.40.50.300 11 249 5.2E-59 T 12-10-2018 Alide_2849 0586b8f9d0caade8cd4f923b6cfaf389 590 Gene3D G3DSA:3.40.50.300 334 568 3.8E-64 T 12-10-2018 Alide_2849 0586b8f9d0caade8cd4f923b6cfaf389 590 Pfam PF00005 ABC transporter 357 500 1.7E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2849 0586b8f9d0caade8cd4f923b6cfaf389 590 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2849 0586b8f9d0caade8cd4f923b6cfaf389 590 SUPERFAMILY SSF52540 340 559 3.59E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0379 83eeeb13e4680d3934602c7ffa382430 647 SUPERFAMILY SSF56519 54 250 1.15E-47 T 12-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Alide_0379 83eeeb13e4680d3934602c7ffa382430 647 Pfam PF00905 Penicillin binding protein transpeptidase domain 268 606 3.4E-72 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Alide_0379 83eeeb13e4680d3934602c7ffa382430 647 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 614 47.833 T 12-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_0379 83eeeb13e4680d3934602c7ffa382430 647 Gene3D G3DSA:3.90.1310.10 61 245 5.1E-42 T 12-10-2018 Alide_0379 83eeeb13e4680d3934602c7ffa382430 647 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 17 610 1.6E-229 T 12-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_0379 83eeeb13e4680d3934602c7ffa382430 647 Gene3D G3DSA:3.40.710.10 250 613 1.6E-99 T 12-10-2018 Alide_0379 83eeeb13e4680d3934602c7ffa382430 647 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 235 1.8E-42 T 12-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Alide_0379 83eeeb13e4680d3934602c7ffa382430 647 Gene3D G3DSA:3.30.1390.30 82 157 5.1E-42 T 12-10-2018 Alide_0379 83eeeb13e4680d3934602c7ffa382430 647 SUPERFAMILY SSF56601 251 610 9.09E-101 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Alide_2448 5de3399cf108f26a476206af6c31d7e0 288 SUPERFAMILY SSF161098 31 273 1.96E-55 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2448 5de3399cf108f26a476206af6c31d7e0 288 Gene3D G3DSA:1.10.3720.10 24 284 1.3E-70 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2448 5de3399cf108f26a476206af6c31d7e0 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 279 5.3E-27 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_2448 5de3399cf108f26a476206af6c31d7e0 288 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 19 278 7.6E-100 T 12-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 Alide_2448 5de3399cf108f26a476206af6c31d7e0 288 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 19 282 1.5E-128 T 12-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 Alide_3371 0d97e8e7143c723d39c12749053584c6 284 ProSitePatterns PS00161 Isocitrate lyase signature. 113 118 - T 12-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 Alide_3371 0d97e8e7143c723d39c12749053584c6 284 Gene3D G3DSA:3.20.20.60 1 282 1.2E-99 T 12-10-2018 Alide_3371 0d97e8e7143c723d39c12749053584c6 284 SUPERFAMILY SSF51621 3 283 1.26E-90 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_3371 0d97e8e7143c723d39c12749053584c6 284 Pfam PF13714 Phosphoenolpyruvate phosphomutase 7 243 9.7E-52 T 12-10-2018 Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 Gene3D G3DSA:3.30.559.10 196 432 1.7E-80 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 Pfam PF02817 e3 binding domain 148 182 9.3E-11 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 SUPERFAMILY SSF51230 2 95 6.28E-24 T 12-10-2018 IPR011053 Single hybrid motif Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 Gene3D G3DSA:2.40.50.100 4 81 1.7E-19 T 12-10-2018 Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 SUPERFAMILY SSF47005 142 187 2.35E-10 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 205 433 3.1E-79 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 Pfam PF00364 Biotin-requiring enzyme 6 77 8.2E-17 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 SUPERFAMILY SSF52777 201 433 2.0E-77 T 12-10-2018 Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 Gene3D G3DSA:4.10.320.10 137 190 1.3E-14 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Alide_0630 421fa8292cf5c6b0c8b4ac09eb6d6d42 435 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Alide_2700 b2ea2f60c289b76b819327684178a54c 145 Gene3D G3DSA:3.30.300.20 2 127 4.8E-18 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta Alide_2700 b2ea2f60c289b76b819327684178a54c 145 SUPERFAMILY SSF82784 4 135 5.1E-25 T 12-10-2018 IPR036102 OsmC/Ohr superfamily Alide_2700 b2ea2f60c289b76b819327684178a54c 145 Pfam PF02566 OsmC-like protein 40 133 3.1E-15 T 12-10-2018 IPR003718 OsmC/Ohr family Alide_0351 50074e7a1ec8af0930e07d66114d7979 318 PIRSF PIRSF017082 2 316 2.8E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0351 50074e7a1ec8af0930e07d66114d7979 318 SUPERFAMILY SSF53850 109 281 4.55E-15 T 12-10-2018 Alide_0351 50074e7a1ec8af0930e07d66114d7979 318 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 43 312 1.1E-87 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0351 50074e7a1ec8af0930e07d66114d7979 318 Gene3D G3DSA:3.40.190.10 120 243 1.6E-114 T 12-10-2018 Alide_0351 50074e7a1ec8af0930e07d66114d7979 318 Gene3D G3DSA:3.40.190.150 24 308 1.6E-114 T 12-10-2018 Alide_2546 04acc66d67e6931bae0b318ba579e0fa 409 SUPERFAMILY SSF53383 27 405 1.99E-78 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2546 04acc66d67e6931bae0b318ba579e0fa 409 Gene3D G3DSA:3.40.640.10 6 263 3.6E-65 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2546 04acc66d67e6931bae0b318ba579e0fa 409 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 11 404 9.8E-76 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_2546 04acc66d67e6931bae0b318ba579e0fa 409 PIRSF PIRSF001434 1 406 1.3E-101 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_2546 04acc66d67e6931bae0b318ba579e0fa 409 Gene3D G3DSA:3.90.1150.10 266 406 1.4E-29 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2910 7e47ccc1c8aae553a8f3ab4658210d10 161 SUPERFAMILY SSF103473 29 148 1.96E-5 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_2910 7e47ccc1c8aae553a8f3ab4658210d10 161 Pfam PF05977 Transmembrane secretion effector 25 122 5.5E-22 T 12-10-2018 IPR010290 Transmembrane secretion effector Alide_2458 3e290355d953b9f5b07244366349597f 196 Gene3D G3DSA:1.10.8.420 1 52 5.3E-18 T 12-10-2018 Alide_2458 3e290355d953b9f5b07244366349597f 196 SUPERFAMILY SSF111304 4 196 7.19E-70 T 12-10-2018 IPR023627 Recombination protein RecR Alide_2458 3e290355d953b9f5b07244366349597f 196 TIGRFAM TIGR00615 recR: recombination protein RecR 5 196 1.5E-67 T 12-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Alide_2458 3e290355d953b9f5b07244366349597f 196 Pfam PF02132 RecR protein 40 78 2.4E-14 T 12-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger Alide_2458 3e290355d953b9f5b07244366349597f 196 Hamap MF_00017 Recombination protein RecR [recR]. 1 196 96.921 T 12-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Alide_2458 3e290355d953b9f5b07244366349597f 196 Gene3D G3DSA:3.40.1360.10 77 196 2.2E-40 T 12-10-2018 Alide_2458 3e290355d953b9f5b07244366349597f 196 Pfam PF13662 Toprim domain 81 171 3.0E-23 T 12-10-2018 IPR006171 TOPRIM domain Alide_2458 3e290355d953b9f5b07244366349597f 196 SMART SM00493 80 165 2.4E-10 T 12-10-2018 IPR006171 TOPRIM domain Alide_1968 1d0df954d0c369daf124defe3692f7f7 568 SUPERFAMILY SSF47203 299 459 3.22E-36 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_1968 1d0df954d0c369daf124defe3692f7f7 568 Gene3D G3DSA:2.40.110.20 148 301 1.1E-45 T 12-10-2018 Alide_1968 1d0df954d0c369daf124defe3692f7f7 568 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 416 435 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_1968 1d0df954d0c369daf124defe3692f7f7 568 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 192 290 1.3E-15 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_1968 1d0df954d0c369daf124defe3692f7f7 568 Gene3D G3DSA:1.20.140.10 302 459 4.4E-34 T 12-10-2018 Alide_1968 1d0df954d0c369daf124defe3692f7f7 568 SUPERFAMILY SSF56645 107 310 3.66E-39 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_1968 1d0df954d0c369daf124defe3692f7f7 568 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 301 457 1.9E-30 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0112 dfea1386e009689b6e29649716ad2113 622 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 25 246 1.4E-105 T 12-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Alide_0112 dfea1386e009689b6e29649716ad2113 622 SUPERFAMILY SSF68923 12 249 9.42E-105 T 12-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Alide_0112 dfea1386e009689b6e29649716ad2113 622 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 250 620 3.2E-162 T 12-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Alide_0112 dfea1386e009689b6e29649716ad2113 622 Gene3D G3DSA:2.170.8.10 60 413 7.9E-257 T 12-10-2018 Alide_0112 dfea1386e009689b6e29649716ad2113 622 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 274 282 - T 12-10-2018 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Alide_0112 dfea1386e009689b6e29649716ad2113 622 Gene3D G3DSA:3.90.228.20 250 619 7.9E-257 T 12-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Alide_0112 dfea1386e009689b6e29649716ad2113 622 Gene3D G3DSA:3.40.449.10 25 249 7.9E-257 T 12-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Alide_0112 dfea1386e009689b6e29649716ad2113 622 SUPERFAMILY SSF53795 250 620 5.04E-150 T 12-10-2018 Alide_0112 dfea1386e009689b6e29649716ad2113 622 PIRSF PIRSF001348 3 622 4.4E-278 T 12-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Alide_0112 dfea1386e009689b6e29649716ad2113 622 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 13 621 49.613 T 12-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 Alide_3951 0df44c4d78e9a13b43634d5f9f17d1f8 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 47 66 2.2E-7 T 12-10-2018 Alide_3951 0df44c4d78e9a13b43634d5f9f17d1f8 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 2.2E-7 T 12-10-2018 Alide_3951 0df44c4d78e9a13b43634d5f9f17d1f8 488 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 227 245 2.2E-7 T 12-10-2018 Alide_3951 0df44c4d78e9a13b43634d5f9f17d1f8 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 46 68 6.7E-10 T 12-10-2018 Alide_3951 0df44c4d78e9a13b43634d5f9f17d1f8 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 185 194 6.7E-10 T 12-10-2018 Alide_3951 0df44c4d78e9a13b43634d5f9f17d1f8 488 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 227 252 6.7E-10 T 12-10-2018 Alide_3951 0df44c4d78e9a13b43634d5f9f17d1f8 488 Gene3D G3DSA:3.50.50.60 36 303 8.2E-41 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3951 0df44c4d78e9a13b43634d5f9f17d1f8 488 SUPERFAMILY SSF51905 46 396 7.22E-27 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3951 0df44c4d78e9a13b43634d5f9f17d1f8 488 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 44 268 6.2E-16 T 12-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase Alide_1529 d610ed45135903eb89fb1be488435518 193 SUPERFAMILY SSF51306 70 189 4.36E-29 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_1529 d610ed45135903eb89fb1be488435518 193 Gene3D G3DSA:2.10.109.10 78 193 5.9E-32 T 12-10-2018 Alide_1529 d610ed45135903eb89fb1be488435518 193 SUPERFAMILY SSF46785 1 59 3.09E-8 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1529 d610ed45135903eb89fb1be488435518 193 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 116 127 7.1E-8 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Alide_1529 d610ed45135903eb89fb1be488435518 193 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 105 115 7.1E-8 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Alide_1529 d610ed45135903eb89fb1be488435518 193 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 144 156 7.1E-8 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Alide_1529 d610ed45135903eb89fb1be488435518 193 Gene3D G3DSA:1.10.10.10 1 60 3.4E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1529 d610ed45135903eb89fb1be488435518 193 Pfam PF00717 Peptidase S24-like 108 173 2.5E-13 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Alide_2551 e7f8ae447cd40661f6ca3024493c00e9 634 TIGRFAM TIGR02316 propion_prpE: propionate--CoA ligase 7 631 0.0 T 12-10-2018 IPR012694 Propionate--CoA ligase GO:0019629|GO:0050218 KEGG: 00640+6.2.1.17|MetaCyc: PWY-3941|MetaCyc: PWY-5104|MetaCyc: PWY-5747 Alide_2551 e7f8ae447cd40661f6ca3024493c00e9 634 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 8 62 2.4E-20 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Alide_2551 e7f8ae447cd40661f6ca3024493c00e9 634 Pfam PF00501 AMP-binding enzyme 72 507 9.7E-84 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_2551 e7f8ae447cd40661f6ca3024493c00e9 634 Pfam PF13193 AMP-binding enzyme C-terminal domain 516 599 6.3E-23 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_2551 e7f8ae447cd40661f6ca3024493c00e9 634 SUPERFAMILY SSF56801 7 634 2.22E-162 T 12-10-2018 Alide_2551 e7f8ae447cd40661f6ca3024493c00e9 634 Gene3D G3DSA:3.30.300.30 503 633 1.1E-27 T 12-10-2018 Alide_2551 e7f8ae447cd40661f6ca3024493c00e9 634 Gene3D G3DSA:3.40.50.12780 45 500 1.5E-96 T 12-10-2018 Alide_0266 85caf97776aaedc74be79f1d8b894983 511 SUPERFAMILY SSF54211 10 171 1.67E-25 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0266 85caf97776aaedc74be79f1d8b894983 511 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 503 1.9E-173 T 12-10-2018 IPR004482 Mg chelatase-related protein Alide_0266 85caf97776aaedc74be79f1d8b894983 511 SMART SM00382 220 401 1.1E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0266 85caf97776aaedc74be79f1d8b894983 511 Gene3D G3DSA:3.40.50.300 199 508 6.5E-59 T 12-10-2018 Alide_0266 85caf97776aaedc74be79f1d8b894983 511 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 411 503 1.6E-27 T 12-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain Alide_0266 85caf97776aaedc74be79f1d8b894983 511 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 134 1.9E-38 T 12-10-2018 Alide_0266 85caf97776aaedc74be79f1d8b894983 511 Pfam PF01078 Magnesium chelatase, subunit ChlI 200 404 8.4E-93 T 12-10-2018 IPR000523 Magnesium chelatase ChlI domain Alide_0266 85caf97776aaedc74be79f1d8b894983 511 SUPERFAMILY SSF52540 200 504 1.08E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 SUPERFAMILY SSF56059 474 686 1.0E-27 T 12-10-2018 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 Gene3D G3DSA:3.40.50.261 139 300 1.9E-38 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 SMART SM00881 13 108 7.1E-29 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 163 297 4.8E-34 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 SUPERFAMILY SSF52210 310 459 2.75E-18 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 Gene3D G3DSA:3.30.470.20 475 685 1.1E-54 T 12-10-2018 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 Pfam PF13380 CoA binding domain 18 143 8.4E-22 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 SUPERFAMILY SSF52210 139 299 4.06E-29 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 Gene3D G3DSA:3.40.50.720 10 137 1.1E-36 T 12-10-2018 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 Gene3D G3DSA:3.30.1490.20 493 568 1.1E-54 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 SUPERFAMILY SSF51735 6 147 3.45E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 Pfam PF13549 ATP-grasp domain 472 685 1.6E-48 T 12-10-2018 Alide_0283 7d0d3affc5cfc80d5dd5aff26108f3a5 691 Gene3D G3DSA:3.40.50.261 309 461 1.1E-14 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_0292 f7fd2284db7d65175819ca7577d03f9c 204 Pfam PF14497 Glutathione S-transferase, C-terminal domain 120 201 6.6E-9 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal Alide_0292 f7fd2284db7d65175819ca7577d03f9c 204 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 76 6.4E-15 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_0292 f7fd2284db7d65175819ca7577d03f9c 204 SUPERFAMILY SSF52833 1 85 2.61E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0292 f7fd2284db7d65175819ca7577d03f9c 204 Gene3D G3DSA:3.40.30.10 1 87 4.0E-26 T 12-10-2018 Alide_0292 f7fd2284db7d65175819ca7577d03f9c 204 SUPERFAMILY SSF47616 82 203 1.39E-22 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_0292 f7fd2284db7d65175819ca7577d03f9c 204 Gene3D G3DSA:1.20.1050.10 88 196 1.5E-44 T 12-10-2018 Alide_3683 37bf338af6f7a0495d33e476bca5ff32 282 SUPERFAMILY SSF51735 105 276 6.3E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3683 37bf338af6f7a0495d33e476bca5ff32 282 Gene3D G3DSA:3.40.50.10860 8 262 8.1E-72 T 12-10-2018 Alide_3683 37bf338af6f7a0495d33e476bca5ff32 282 Gene3D G3DSA:3.40.50.720 119 243 8.1E-72 T 12-10-2018 Alide_3683 37bf338af6f7a0495d33e476bca5ff32 282 SUPERFAMILY SSF53223 3 104 5.47E-28 T 12-10-2018 Alide_3683 37bf338af6f7a0495d33e476bca5ff32 282 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 5 277 29.192 T 12-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Alide_3683 37bf338af6f7a0495d33e476bca5ff32 282 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 10 92 2.9E-20 T 12-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Alide_3683 37bf338af6f7a0495d33e476bca5ff32 282 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 7 278 8.4E-74 T 12-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Alide_3683 37bf338af6f7a0495d33e476bca5ff32 282 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 121 200 6.3E-11 T 12-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Alide_0610 5964170c8ca7a2c4efec586895768cb4 190 SUPERFAMILY SSF100950 1 188 1.95E-41 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_0610 5964170c8ca7a2c4efec586895768cb4 190 Gene3D G3DSA:3.40.50.10420 1 189 6.7E-37 T 12-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily Alide_0610 5964170c8ca7a2c4efec586895768cb4 190 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 3 181 6.2E-34 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Alide_0610 5964170c8ca7a2c4efec586895768cb4 190 PIRSF PIRSF006806 1 186 4.1E-26 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Alide_0610 5964170c8ca7a2c4efec586895768cb4 190 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 3 181 4.7E-22 T 12-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase Alide_2392 a67479e6156a01dc6f7e70130c3d7961 125 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 101 8.5E-25 T 12-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 Alide_2392 a67479e6156a01dc6f7e70130c3d7961 125 SUPERFAMILY SSF50022 1 106 1.26E-33 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Alide_2392 a67479e6156a01dc6f7e70130c3d7961 125 Pfam PF00355 Rieske [2Fe-2S] domain 3 81 3.0E-14 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Alide_2392 a67479e6156a01dc6f7e70130c3d7961 125 Gene3D G3DSA:2.102.10.10 1 113 2.1E-28 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Alide_1493 731e233a79c2fbb2bac22d854c6547b1 166 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 13 157 7.5E-47 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Alide_1493 731e233a79c2fbb2bac22d854c6547b1 166 Gene3D G3DSA:3.90.960.10 6 163 1.7E-44 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Alide_1493 731e233a79c2fbb2bac22d854c6547b1 166 PIRSF PIRSF006181 8 165 2.2E-45 T 12-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Alide_1493 731e233a79c2fbb2bac22d854c6547b1 166 Pfam PF04073 Aminoacyl-tRNA editing domain 40 149 1.4E-24 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Alide_1493 731e233a79c2fbb2bac22d854c6547b1 166 SUPERFAMILY SSF55826 10 162 2.35E-40 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Alide_4303 cee985be60fdfb38725f7bede77ab086 314 Gene3D G3DSA:1.10.10.10 1 89 6.2E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4303 cee985be60fdfb38725f7bede77ab086 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 7.6E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4303 cee985be60fdfb38725f7bede77ab086 314 SUPERFAMILY SSF53850 87 300 1.43E-33 T 12-10-2018 Alide_4303 cee985be60fdfb38725f7bede77ab086 314 Gene3D G3DSA:3.40.190.290 90 301 3.5E-40 T 12-10-2018 Alide_4303 cee985be60fdfb38725f7bede77ab086 314 Pfam PF03466 LysR substrate binding domain 85 290 1.1E-34 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4303 cee985be60fdfb38725f7bede77ab086 314 SUPERFAMILY SSF46785 1 108 1.9E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1909 350f2339b18e05bbaa8ed405a4ed34c9 355 SUPERFAMILY SSF53474 84 349 2.32E-26 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1909 350f2339b18e05bbaa8ed405a4ed34c9 355 Gene3D G3DSA:3.40.50.1820 24 352 2.5E-96 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2919 622881f4be30948dea333d4f275ac206 377 Pfam PF13458 Periplasmic binding protein 35 372 7.9E-55 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_2919 622881f4be30948dea333d4f275ac206 377 Gene3D G3DSA:3.40.50.2300 146 284 1.3E-70 T 12-10-2018 Alide_2919 622881f4be30948dea333d4f275ac206 377 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 52 68 3.1E-9 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2919 622881f4be30948dea333d4f275ac206 377 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 30 46 3.1E-9 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2919 622881f4be30948dea333d4f275ac206 377 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 71 89 3.1E-9 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2919 622881f4be30948dea333d4f275ac206 377 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 284 297 3.1E-9 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2919 622881f4be30948dea333d4f275ac206 377 Gene3D G3DSA:3.40.50.2300 37 348 1.3E-70 T 12-10-2018 Alide_2919 622881f4be30948dea333d4f275ac206 377 SUPERFAMILY SSF53822 34 375 8.75E-73 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 PIRSF PIRSF004749 1 172 1.6E-47 T 12-10-2018 IPR023635 Peptide deformylase Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 160 2.3E-33 T 12-10-2018 IPR023635 Peptide deformylase Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 PRINTS PR01576 Peptide deformylase signature 34 63 4.4E-28 T 12-10-2018 IPR023635 Peptide deformylase Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 PRINTS PR01576 Peptide deformylase signature 111 129 4.4E-28 T 12-10-2018 IPR023635 Peptide deformylase Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 PRINTS PR01576 Peptide deformylase signature 130 159 4.4E-28 T 12-10-2018 IPR023635 Peptide deformylase Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 PRINTS PR01576 Peptide deformylase signature 99 110 4.4E-28 T 12-10-2018 IPR023635 Peptide deformylase Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 Pfam PF01327 Polypeptide deformylase 4 159 6.4E-45 T 12-10-2018 IPR023635 Peptide deformylase Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 SUPERFAMILY SSF56420 1 167 6.8E-57 T 12-10-2018 IPR036821 Peptide deformylase superfamily Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 Gene3D G3DSA:3.90.45.10 1 179 9.2E-63 T 12-10-2018 IPR036821 Peptide deformylase superfamily Alide_2615 ec54d519054317eb8a068f39e1f507bc 179 Hamap MF_00163 Peptide deformylase [def]. 2 172 25.725 T 12-10-2018 IPR023635 Peptide deformylase Alide_0019 2dd360a6d2aea14975646410ce7fbc1a 367 Pfam PF00793 DAHP synthetase I family 58 348 5.3E-103 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Alide_0019 2dd360a6d2aea14975646410ce7fbc1a 367 PIRSF PIRSF001361 9 366 4.4E-157 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Alide_0019 2dd360a6d2aea14975646410ce7fbc1a 367 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 20 363 5.7E-155 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Alide_0019 2dd360a6d2aea14975646410ce7fbc1a 367 Gene3D G3DSA:3.20.20.70 16 364 3.8E-158 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0019 2dd360a6d2aea14975646410ce7fbc1a 367 SUPERFAMILY SSF51569 21 362 3.3E-133 T 12-10-2018 Alide_2023 ff2bd0c930d1245980fa47c8db86b09d 141 SMART SM00318 6 125 1.1E-24 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Alide_2023 ff2bd0c930d1245980fa47c8db86b09d 141 Pfam PF00565 Staphylococcal nuclease homologue 32 125 1.7E-19 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Alide_2023 ff2bd0c930d1245980fa47c8db86b09d 141 SUPERFAMILY SSF50199 5 132 1.7E-31 T 12-10-2018 Alide_2023 ff2bd0c930d1245980fa47c8db86b09d 141 Gene3D G3DSA:2.40.50.90 7 135 3.5E-26 T 12-10-2018 IPR035437 SNase-like, OB-fold superfamily Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 SUPERFAMILY SSF52540 6 288 1.11E-105 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Gene3D G3DSA:3.30.70.240 612 683 6.2E-90 T 12-10-2018 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 SMART SM00889 487 606 2.2E-72 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 SUPERFAMILY SSF54980 611 698 2.4E-29 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Gene3D G3DSA:3.40.50.300 1 293 1.9E-111 T 12-10-2018 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Pfam PF03764 Elongation factor G, domain IV 486 606 2.2E-47 T 12-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 SMART SM00838 608 696 1.6E-55 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Pfam PF03144 Elongation factor Tu domain 2 331 398 2.3E-19 T 12-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 12-10-2018 IPR031157 Tr-type G domain, conserved site Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Pfam PF00679 Elongation factor G C-terminus 608 694 2.7E-31 T 12-10-2018 IPR000640 Elongation factor EFG, domain V-like Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 SUPERFAMILY SSF54211 486 607 2.43E-44 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Hamap MF_00054_B Elongation factor G [fusA]. 6 700 111.891 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 701 0.0 T 12-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 PRINTS PR00315 GTP-binding elongation factor signature 137 146 8.4E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 PRINTS PR00315 GTP-binding elongation factor signature 12 25 8.4E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 PRINTS PR00315 GTP-binding elongation factor signature 58 66 8.4E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 PRINTS PR00315 GTP-binding elongation factor signature 85 95 8.4E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 PRINTS PR00315 GTP-binding elongation factor signature 101 112 8.4E-16 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Gene3D G3DSA:2.40.30.10 294 407 1.8E-46 T 12-10-2018 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 7.2E-64 T 12-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 SUPERFAMILY SSF54980 411 488 1.33E-24 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Gene3D G3DSA:3.30.230.10 491 696 6.2E-90 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Gene3D G3DSA:3.30.70.870 412 490 1.1E-32 T 12-10-2018 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 Pfam PF14492 Elongation Factor G, domain II 411 485 1.5E-33 T 12-10-2018 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 186 5.2E-29 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_0408 51d4c7e763af641cc3a17a0fb13ae32f 702 SUPERFAMILY SSF50447 255 409 9.94E-37 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_2562 0996c7ec82733dac562077a6f0ca9bdd 402 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 15 398 6.6E-165 T 12-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_2562 0996c7ec82733dac562077a6f0ca9bdd 402 Gene3D G3DSA:3.40.50.1100 18 214 1.2E-167 T 12-10-2018 Alide_2562 0996c7ec82733dac562077a6f0ca9bdd 402 PIRSF PIRSF001413 3 402 1.5E-155 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_2562 0996c7ec82733dac562077a6f0ca9bdd 402 SUPERFAMILY SSF53686 11 399 9.56E-132 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_2562 0996c7ec82733dac562077a6f0ca9bdd 402 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 61 387 1.8E-45 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_2562 0996c7ec82733dac562077a6f0ca9bdd 402 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 89 103 - T 12-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_2562 0996c7ec82733dac562077a6f0ca9bdd 402 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 10 400 48.704 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_2562 0996c7ec82733dac562077a6f0ca9bdd 402 Gene3D G3DSA:3.40.50.1100 62 392 1.2E-167 T 12-10-2018 Alide_0606 9da45733b58559605193fed31cc20797 106 Pfam PF14330 Domain of unknown function (DUF4387) 6 102 5.3E-34 T 12-10-2018 IPR025496 Protein of unknown function DUF4387 Alide_1730 d2385beaf07a1dc3b8ec713d13453f73 148 Gene3D G3DSA:3.30.420.10 2 146 8.5E-60 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1730 d2385beaf07a1dc3b8ec713d13453f73 148 SUPERFAMILY SSF53098 2 144 2.02E-58 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_1730 d2385beaf07a1dc3b8ec713d13453f73 148 Pfam PF00075 RNase H 2 142 7.1E-51 T 12-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 Alide_1730 d2385beaf07a1dc3b8ec713d13453f73 148 Hamap MF_00042 Ribonuclease H [rnhA]. 1 148 33.59 T 12-10-2018 IPR022892 Ribonuclease HI GO:0004523 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 155 6.8E-52 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 152 2.8E-47 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 Gene3D G3DSA:3.30.420.10 3 159 4.7E-47 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 115 149 - T 12-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 SUPERFAMILY SSF53098 1 155 2.05E-50 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 63 79 1.2E-32 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 109 128 1.2E-32 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 140 152 1.2E-32 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 1.2E-32 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 85 101 1.2E-32 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Alide_3688 e58a398c454d28abea6af1cd1b4f0255 182 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 155 45.221 T 12-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 PIRSF PIRSF001535 1 581 3.3E-262 T 12-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.5E-17 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.5E-17 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.5E-17 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.5E-17 T 12-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 Pfam PF04073 Aminoacyl-tRNA editing domain 257 387 3.0E-27 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 Gene3D G3DSA:3.40.50.800 4 560 2.2E-233 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 Gene3D G3DSA:3.30.930.10 11 474 2.2E-233 T 12-10-2018 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 SUPERFAMILY SSF52954 473 579 3.27E-31 T 12-10-2018 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 Gene3D G3DSA:3.90.960.10 240 398 2.2E-233 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 SUPERFAMILY SSF55681 10 487 1.65E-97 T 12-10-2018 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 580 40.431 T 12-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 468 1.3E-43 T 12-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 Pfam PF03129 Anticodon binding domain 485 577 6.2E-18 T 12-10-2018 IPR004154 Anticodon-binding Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 SUPERFAMILY SSF55826 218 398 4.32E-32 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Alide_0931 95492f80dcf75530f8ad08c58df6b6d6 581 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 575 3.4E-222 T 12-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 Alide_3834 88a9c466f5c4581c604833e518b2257c 135 Gene3D G3DSA:1.10.1660.10 2 134 2.4E-25 T 12-10-2018 Alide_3834 88a9c466f5c4581c604833e518b2257c 135 SUPERFAMILY SSF46955 3 112 4.4E-25 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_3834 88a9c466f5c4581c604833e518b2257c 135 Pfam PF13411 MerR HTH family regulatory protein 4 72 4.8E-15 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_3834 88a9c466f5c4581c604833e518b2257c 135 SMART SM00422 4 74 1.4E-15 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1146 b452c6e380555c7029f0c3029ff9d31a 434 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1146 b452c6e380555c7029f0c3029ff9d31a 434 SUPERFAMILY SSF52540 43 269 9.78E-76 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1146 b452c6e380555c7029f0c3029ff9d31a 434 Pfam PF00571 CBS domain 348 395 1.9E-4 T 12-10-2018 IPR000644 CBS domain Alide_1146 b452c6e380555c7029f0c3029ff9d31a 434 SMART SM00382 53 242 1.1E-18 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1146 b452c6e380555c7029f0c3029ff9d31a 434 SUPERFAMILY SSF54631 275 394 2.02E-15 T 12-10-2018 Alide_1146 b452c6e380555c7029f0c3029ff9d31a 434 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 37 395 2.7E-144 T 12-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 Alide_1146 b452c6e380555c7029f0c3029ff9d31a 434 Gene3D G3DSA:3.10.580.10 270 396 1.0E-10 T 12-10-2018 Alide_1146 b452c6e380555c7029f0c3029ff9d31a 434 Gene3D G3DSA:3.40.50.300 29 268 1.4E-71 T 12-10-2018 Alide_1146 b452c6e380555c7029f0c3029ff9d31a 434 Pfam PF00005 ABC transporter 46 192 6.9E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 Pfam PF07724 AAA domain (Cdc48 subfamily) 492 653 1.8E-47 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 Gene3D G3DSA:3.40.50.300 164 356 2.5E-65 T 12-10-2018 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.6E-14 T 12-10-2018 IPR004176 Clp, N-terminal Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 SMART SM00382 493 660 2.3E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 SMART SM00382 212 356 6.4E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 524 542 - T 12-10-2018 IPR028299 ClpA/B, conserved site 2 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 SUPERFAMILY SSF52540 443 742 5.4E-79 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 539 557 2.9E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 568 586 2.9E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 615 2.9E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 497 515 2.9E-38 T 12-10-2018 IPR001270 ClpA/B family GO:0005524 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 SUPERFAMILY SSF52540 174 427 1.82E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 SUPERFAMILY SSF81923 1 143 3.01E-57 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 217 329 1.2E-11 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 Gene3D G3DSA:3.40.50.300 445 657 4.5E-79 T 12-10-2018 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 Gene3D G3DSA:1.10.8.60 659 756 5.6E-27 T 12-10-2018 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 659 739 6.0E-23 T 12-10-2018 IPR019489 Clp ATPase, C-terminal Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 Gene3D G3DSA:1.10.8.60 357 444 5.0E-32 T 12-10-2018 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 SMART SM01086 659 750 7.1E-31 T 12-10-2018 IPR019489 Clp ATPase, C-terminal Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 740 0.0 T 12-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 308 320 - T 12-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Alide_2660 744a478e53aa8653120d5f8b0c8ab30b 782 Gene3D G3DSA:1.10.1780.10 1 144 1.0E-40 T 12-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Alide_0217 207bdec2482c776164a7954965ba3227 344 TIGRFAM TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB 14 313 1.7E-121 T 12-10-2018 IPR014149 Conjugative transfer, TrbB GO:0000746|GO:0005737 Alide_0217 207bdec2482c776164a7954965ba3227 344 Pfam PF00437 Type II/IV secretion system protein 26 293 5.6E-78 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0217 207bdec2482c776164a7954965ba3227 344 Gene3D G3DSA:3.30.450.90 19 122 1.9E-13 T 12-10-2018 Alide_0217 207bdec2482c776164a7954965ba3227 344 SUPERFAMILY SSF52540 8 287 1.14E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0217 207bdec2482c776164a7954965ba3227 344 Gene3D G3DSA:3.40.50.300 124 320 9.9E-54 T 12-10-2018 Alide_4545 784d771c08d84ca836bedb2f81df3384 1924 Pfam PF07916 TraG-like protein, N-terminal region 4 469 1.2E-36 T 12-10-2018 IPR012931 TraG-like, N-terminal Alide_0440 0937f547d474a2cf631a0afe38d099b3 138 Gene3D G3DSA:1.20.5.440 90 132 1.7E-7 T 12-10-2018 Alide_0440 0937f547d474a2cf631a0afe38d099b3 138 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 131 1.8E-40 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0440 0937f547d474a2cf631a0afe38d099b3 138 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 3.0E-28 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0440 0937f547d474a2cf631a0afe38d099b3 138 Gene3D G3DSA:2.60.15.10 2 89 2.7E-30 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0440 0937f547d474a2cf631a0afe38d099b3 138 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 130 21.068 T 12-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0440 0937f547d474a2cf631a0afe38d099b3 138 SUPERFAMILY SSF46604 87 135 3.14E-9 T 12-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0440 0937f547d474a2cf631a0afe38d099b3 138 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 89 2.0E-36 T 12-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0440 0937f547d474a2cf631a0afe38d099b3 138 SUPERFAMILY SSF51344 2 85 4.58E-24 T 12-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Pfam PF08448 PAS fold 92 200 1.1E-8 T 12-10-2018 IPR013656 PAS fold-4 Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Pfam PF00563 EAL domain 639 874 1.7E-75 T 12-10-2018 IPR001633 EAL domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Gene3D G3DSA:3.30.450.20 88 210 1.2E-13 T 12-10-2018 Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Gene3D G3DSA:3.30.450.20 329 463 1.9E-37 T 12-10-2018 Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Gene3D G3DSA:3.30.70.270 464 634 8.7E-48 T 12-10-2018 Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SMART SM00086 158 201 5.9 T 12-10-2018 IPR001610 PAC motif Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SMART SM00086 408 450 3.8E-8 T 12-10-2018 IPR001610 PAC motif Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SMART SM00086 286 328 5.1E-4 T 12-10-2018 IPR001610 PAC motif Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SUPERFAMILY SSF55073 466 625 1.02E-40 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SUPERFAMILY SSF141868 639 885 8.11E-89 T 12-10-2018 IPR035919 EAL domain superfamily Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Pfam PF13426 PAS domain 347 449 1.5E-17 T 12-10-2018 IPR000014 PAS domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Pfam PF00990 Diguanylate cyclase, GGDEF domain 462 617 7.4E-40 T 12-10-2018 IPR000160 GGDEF domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Gene3D G3DSA:3.20.20.450 635 888 8.4E-103 T 12-10-2018 IPR035919 EAL domain superfamily Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Pfam PF08447 PAS fold 251 321 9.1E-15 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 Gene3D G3DSA:3.30.450.20 211 324 1.3E-26 T 12-10-2018 Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SMART SM00267 450 623 6.9E-52 T 12-10-2018 IPR000160 GGDEF domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SUPERFAMILY SSF55785 70 197 3.14E-12 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 340 457 6.8E-19 T 12-10-2018 IPR000014 PAS domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 210 334 8.5E-10 T 12-10-2018 IPR000014 PAS domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 457 619 1.8E-39 T 12-10-2018 IPR000160 GGDEF domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SMART SM00052 633 879 8.6E-118 T 12-10-2018 IPR001633 EAL domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SMART SM00091 213 280 0.003 T 12-10-2018 IPR000014 PAS domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SMART SM00091 84 151 7.3E-6 T 12-10-2018 IPR000014 PAS domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SMART SM00091 336 402 4.3E-6 T 12-10-2018 IPR000014 PAS domain Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SUPERFAMILY SSF55785 341 448 5.41E-29 T 12-10-2018 IPR035965 PAS domain superfamily Alide_0501 d93a32d5a5b9082e84a1d6906269493d 888 SUPERFAMILY SSF55785 201 326 3.66E-21 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3123 a3e0f09e646e348275b98a24f71defeb 96 Hamap MF_00720 Primosomal replication protein N [priB]. 2 96 22.729 T 12-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 Alide_3123 a3e0f09e646e348275b98a24f71defeb 96 PIRSF PIRSF003135 1 96 1.5E-13 T 12-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 Alide_3123 a3e0f09e646e348275b98a24f71defeb 96 Gene3D G3DSA:2.40.50.140 2 96 3.4E-30 T 12-10-2018 Alide_3123 a3e0f09e646e348275b98a24f71defeb 96 SUPERFAMILY SSF50249 2 94 7.28E-19 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_3123 a3e0f09e646e348275b98a24f71defeb 96 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 3 95 2.6E-31 T 12-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 Alide_0008 09e5064acda778366ff499952bc68776 340 SUPERFAMILY SSF53850 93 297 7.27E-10 T 12-10-2018 Alide_0008 09e5064acda778366ff499952bc68776 340 Gene3D G3DSA:3.40.190.150 45 330 2.9E-89 T 12-10-2018 Alide_0008 09e5064acda778366ff499952bc68776 340 Gene3D G3DSA:3.40.190.10 142 264 2.9E-89 T 12-10-2018 Alide_0008 09e5064acda778366ff499952bc68776 340 PIRSF PIRSF017082 7 340 4.3E-55 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0008 09e5064acda778366ff499952bc68776 340 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 63 336 1.3E-57 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1423 df5f6f0f895a369c51a239e635aef1fa 130 Pfam PF04172 LrgB-like family 45 125 2.8E-22 T 12-10-2018 IPR007300 CidB/LrgB family Alide_2319 f70d6c75740f5f95eba574bf085fd4d2 224 Gene3D G3DSA:3.40.50.2300 1 122 8.3E-35 T 12-10-2018 Alide_2319 f70d6c75740f5f95eba574bf085fd4d2 224 SUPERFAMILY SSF52172 1 172 4.38E-35 T 12-10-2018 IPR011006 CheY-like superfamily Alide_2319 f70d6c75740f5f95eba574bf085fd4d2 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 216 3.3E-20 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_2319 f70d6c75740f5f95eba574bf085fd4d2 224 Gene3D G3DSA:1.10.10.10 124 220 1.8E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2319 f70d6c75740f5f95eba574bf085fd4d2 224 SMART SM00448 1 112 5.0E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2319 f70d6c75740f5f95eba574bf085fd4d2 224 Pfam PF00072 Response regulator receiver domain 3 112 8.4E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2319 f70d6c75740f5f95eba574bf085fd4d2 224 SMART SM00862 145 216 5.5E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_2112 0d1a4a80bb792df7aa9f20039e4c4a56 269 PIRSF PIRSF006241 1 268 9.0E-87 T 12-10-2018 IPR026040 Hydroxypyruvate isomerase-like Alide_2112 0d1a4a80bb792df7aa9f20039e4c4a56 269 Gene3D G3DSA:3.20.20.150 1 266 2.2E-72 T 12-10-2018 Alide_2112 0d1a4a80bb792df7aa9f20039e4c4a56 269 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 3.2E-33 T 12-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Alide_2112 0d1a4a80bb792df7aa9f20039e4c4a56 269 SUPERFAMILY SSF51658 1 268 7.46E-79 T 12-10-2018 IPR036237 Xylose isomerase-like superfamily Alide_1394 f78c2a50b0abd16676301f006610a8f9 99 SUPERFAMILY SSF46992 14 95 5.89E-27 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1394 f78c2a50b0abd16676301f006610a8f9 99 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 21 84 4.0E-26 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1394 f78c2a50b0abd16676301f006610a8f9 99 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 94 15.768 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1394 f78c2a50b0abd16676301f006610a8f9 99 Gene3D G3DSA:1.20.58.110 11 96 7.7E-24 T 12-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1394 f78c2a50b0abd16676301f006610a8f9 99 TIGRFAM TIGR00029 S20: ribosomal protein bS20 14 95 7.0E-23 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1394 f78c2a50b0abd16676301f006610a8f9 99 Pfam PF01649 Ribosomal protein S20 14 93 5.7E-24 T 12-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_2538 249322c3fa2c51922613f6cdf295046a 161 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 6 121 3.6E-47 T 12-10-2018 IPR028973 PhnB-like Alide_2538 249322c3fa2c51922613f6cdf295046a 161 Gene3D G3DSA:3.10.180.70 2 161 1.5E-62 T 12-10-2018 Alide_2538 249322c3fa2c51922613f6cdf295046a 161 SUPERFAMILY SSF54593 6 159 1.85E-49 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2538 249322c3fa2c51922613f6cdf295046a 161 PIRSF PIRSF021700 2 161 1.5E-67 T 12-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase Alide_4524 8049d277c44e8ca341341e5897c1f582 202 Pfam PF14348 Domain of unknown function (DUF4400) 86 193 4.8E-11 T 12-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Alide_2898 7806a0367e23d4d311be06bb4a21a14e 90 SMART SM00528 51 90 0.0012 T 12-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 Alide_2898 7806a0367e23d4d311be06bb4a21a14e 90 Gene3D G3DSA:3.30.160.420 61 87 8.9E-12 T 12-10-2018 Alide_2898 7806a0367e23d4d311be06bb4a21a14e 90 Pfam PF00816 H-NS histone family 7 82 1.0E-20 T 12-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 Alide_2898 7806a0367e23d4d311be06bb4a21a14e 90 SUPERFAMILY SSF81273 55 90 2.43E-8 T 12-10-2018 Alide_2202 16bbfd5813a57863a3fa3bbc252e75e2 196 Gene3D G3DSA:3.30.230.30 2 125 7.2E-42 T 12-10-2018 IPR036956 Impact, N-terminal domain superfamily Alide_2202 16bbfd5813a57863a3fa3bbc252e75e2 196 SUPERFAMILY SSF54980 129 194 1.15E-11 T 12-10-2018 IPR035647 EF-G domain III/V-like Alide_2202 16bbfd5813a57863a3fa3bbc252e75e2 196 SUPERFAMILY SSF54211 3 123 6.45E-37 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_2202 16bbfd5813a57863a3fa3bbc252e75e2 196 Pfam PF09186 Domain of unknown function (DUF1949) 134 189 3.9E-13 T 12-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal Alide_2202 16bbfd5813a57863a3fa3bbc252e75e2 196 Pfam PF01205 Uncharacterized protein family UPF0029 16 118 5.3E-25 T 12-10-2018 IPR001498 Impact, N-terminal Alide_2378 11b1a364cd42e2ba81b50116b8f5169c 368 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 22 360 1.2E-109 T 12-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 Alide_2378 11b1a364cd42e2ba81b50116b8f5169c 368 Pfam PF03601 Conserved hypothetical protein 698 23 346 3.1E-105 T 12-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 Alide_3238 17409fc5588e2f470920609de5a122e4 328 SUPERFAMILY SSF53850 120 288 7.06E-10 T 12-10-2018 Alide_3238 17409fc5588e2f470920609de5a122e4 328 PIRSF PIRSF017082 1 328 1.8E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3238 17409fc5588e2f470920609de5a122e4 328 Gene3D G3DSA:3.40.190.150 32 318 4.5E-106 T 12-10-2018 Alide_3238 17409fc5588e2f470920609de5a122e4 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 306 5.6E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3238 17409fc5588e2f470920609de5a122e4 328 Gene3D G3DSA:3.40.190.10 130 253 4.5E-106 T 12-10-2018 Alide_0595 cf37e6088494bde7c798a45f4b280ddb 361 Gene3D G3DSA:3.40.50.12710 2 361 9.1E-122 T 12-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 Alide_0595 cf37e6088494bde7c798a45f4b280ddb 361 SUPERFAMILY SSF53335 9 353 1.3E-87 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0595 cf37e6088494bde7c798a45f4b280ddb 361 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 78 296 9.3E-44 T 12-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 Alide_4075 99aebde52ad634c989667414ca4c21b5 504 Gene3D G3DSA:3.30.565.10 369 482 3.9E-10 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_4075 99aebde52ad634c989667414ca4c21b5 504 SUPERFAMILY SSF55785 171 280 1.37E-17 T 12-10-2018 IPR035965 PAS domain superfamily Alide_4075 99aebde52ad634c989667414ca4c21b5 504 Pfam PF13426 PAS domain 171 270 2.5E-11 T 12-10-2018 IPR000014 PAS domain Alide_4075 99aebde52ad634c989667414ca4c21b5 504 Gene3D G3DSA:3.30.450.20 153 304 2.7E-24 T 12-10-2018 Alide_4075 99aebde52ad634c989667414ca4c21b5 504 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 165 274 1.1E-9 T 12-10-2018 IPR000014 PAS domain Alide_4075 99aebde52ad634c989667414ca4c21b5 504 Pfam PF07568 Histidine kinase 292 358 1.9E-8 T 12-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain Alide_4075 99aebde52ad634c989667414ca4c21b5 504 SUPERFAMILY SSF55874 385 440 6.96E-6 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_4290 d586fff13e5761258d3fc4b85dda8b1f 147 Gene3D G3DSA:3.10.129.10 6 138 2.8E-38 T 12-10-2018 Alide_4290 d586fff13e5761258d3fc4b85dda8b1f 147 Pfam PF03061 Thioesterase superfamily 55 127 1.9E-17 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_4290 d586fff13e5761258d3fc4b85dda8b1f 147 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 133 1.2E-25 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_4290 d586fff13e5761258d3fc4b85dda8b1f 147 SUPERFAMILY SSF54637 9 136 1.01E-29 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0835 fb29ce9d3a91972f6d16b61f5af3ee4b 267 SMART SM00849 31 223 4.0E-10 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_0835 fb29ce9d3a91972f6d16b61f5af3ee4b 267 Pfam PF00753 Metallo-beta-lactamase superfamily 30 223 5.2E-17 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_0835 fb29ce9d3a91972f6d16b61f5af3ee4b 267 Gene3D G3DSA:3.60.15.10 9 241 6.0E-29 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_0835 fb29ce9d3a91972f6d16b61f5af3ee4b 267 SUPERFAMILY SSF56281 32 244 1.76E-25 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_1623 b7fb991793a3f6436f452ddfc54be968 331 Gene3D G3DSA:3.40.50.300 6 183 5.4E-44 T 12-10-2018 Alide_1623 b7fb991793a3f6436f452ddfc54be968 331 Pfam PF13177 DNA polymerase III, delta subunit 20 179 8.6E-35 T 12-10-2018 Alide_1623 b7fb991793a3f6436f452ddfc54be968 331 SUPERFAMILY SSF52540 18 224 1.0E-38 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3272 7275923ebec202247fecf69c9dfc2866 444 SUPERFAMILY SSF55021 356 432 3.44E-10 T 12-10-2018 Alide_3272 7275923ebec202247fecf69c9dfc2866 444 Gene3D G3DSA:3.30.360.10 136 352 9.2E-161 T 12-10-2018 Alide_3272 7275923ebec202247fecf69c9dfc2866 444 SUPERFAMILY SSF51735 1 158 5.23E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3272 7275923ebec202247fecf69c9dfc2866 444 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 12-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Alide_3272 7275923ebec202247fecf69c9dfc2866 444 SUPERFAMILY SSF55347 137 302 1.5E-52 T 12-10-2018 Alide_3272 7275923ebec202247fecf69c9dfc2866 444 Gene3D G3DSA:3.30.70.260 353 431 9.2E-161 T 12-10-2018 Alide_3272 7275923ebec202247fecf69c9dfc2866 444 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 1.6E-19 T 12-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Alide_3272 7275923ebec202247fecf69c9dfc2866 444 Pfam PF01842 ACT domain 358 429 1.8E-11 T 12-10-2018 IPR002912 ACT domain Alide_3272 7275923ebec202247fecf69c9dfc2866 444 PIRSF PIRSF000098 1 442 3.4E-161 T 12-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Alide_3272 7275923ebec202247fecf69c9dfc2866 444 Gene3D G3DSA:3.40.50.720 4 340 9.2E-161 T 12-10-2018 Alide_3272 7275923ebec202247fecf69c9dfc2866 444 Pfam PF00742 Homoserine dehydrogenase 137 315 7.7E-65 T 12-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 Pfam PF08245 Mur ligase middle domain 116 303 7.9E-22 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 460 3.7E-199 T 12-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 SUPERFAMILY SSF53623 104 320 1.96E-49 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 SUPERFAMILY SSF51984 1 74 2.22E-16 T 12-10-2018 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 SUPERFAMILY SSF53244 323 459 1.24E-33 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 Gene3D G3DSA:3.40.50.720 1 98 5.5E-32 T 12-10-2018 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 Gene3D G3DSA:3.90.190.20 326 462 2.0E-25 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 461 57.195 T 12-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 Pfam PF01225 Mur ligase family, catalytic domain 2 106 7.1E-12 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 Pfam PF02875 Mur ligase family, glutamate ligase domain 323 372 7.6E-9 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Alide_3671 e8f12d63e5eacf0b28a9f72c701513d4 463 Gene3D G3DSA:3.40.1190.10 99 325 2.1E-56 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 494 1.2E-209 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 249 1.0E-75 T 12-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 Hamap MF_00186 Glycerol kinase [glpK]. 1 498 55.422 T 12-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 PIRSF PIRSF000538 1 497 3.4E-173 T 12-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 258 451 8.0E-62 T 12-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 SUPERFAMILY SSF53067 252 495 2.03E-75 T 12-10-2018 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 Gene3D G3DSA:3.30.420.40 251 497 1.4E-82 T 12-10-2018 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 359 379 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 133 145 - T 12-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 SUPERFAMILY SSF53067 3 252 2.24E-94 T 12-10-2018 Alide_3976 a720dd0141c5314e28f2688f49cfd382 501 Gene3D G3DSA:3.30.420.40 1 250 1.4E-108 T 12-10-2018 Alide_1077 073ef23f5cf65af6ce888d104aa4d6a3 321 Gene3D G3DSA:3.40.190.150 25 311 2.1E-105 T 12-10-2018 Alide_1077 073ef23f5cf65af6ce888d104aa4d6a3 321 Gene3D G3DSA:3.40.190.10 123 246 2.1E-105 T 12-10-2018 Alide_1077 073ef23f5cf65af6ce888d104aa4d6a3 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 44 317 1.1E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1077 073ef23f5cf65af6ce888d104aa4d6a3 321 PIRSF PIRSF017082 1 321 6.6E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1077 073ef23f5cf65af6ce888d104aa4d6a3 321 SUPERFAMILY SSF53850 110 283 6.51E-10 T 12-10-2018 Alide_0125 a99f2f11cf2880a9df8c41028820ee8a 676 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 131 671 8.1E-137 T 12-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Alide_0125 a99f2f11cf2880a9df8c41028820ee8a 676 Pfam PF03477 ATP cone domain 15 101 6.0E-16 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Alide_0125 a99f2f11cf2880a9df8c41028820ee8a 676 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 132 671 1.1E-170 T 12-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Alide_0125 a99f2f11cf2880a9df8c41028820ee8a 676 Gene3D G3DSA:3.20.70.20 144 672 1.1E-103 T 12-10-2018 Alide_0125 a99f2f11cf2880a9df8c41028820ee8a 676 SUPERFAMILY SSF51998 132 667 6.1E-155 T 12-10-2018 Alide_2003 4836d087b9aae106498bcb6ba8e63e74 154 Gene3D G3DSA:3.40.50.960 7 154 1.7E-52 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_2003 4836d087b9aae106498bcb6ba8e63e74 154 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 12 153 27.02 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_2003 4836d087b9aae106498bcb6ba8e63e74 154 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 16 150 4.8E-48 T 12-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_2003 4836d087b9aae106498bcb6ba8e63e74 154 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 18 149 3.1E-41 T 12-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_2003 4836d087b9aae106498bcb6ba8e63e74 154 SUPERFAMILY SSF52121 11 153 3.79E-52 T 12-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Alide_0330 9fc57ffd5405041dcab0a063abc17f39 308 Gene3D G3DSA:3.10.180.10 150 308 1.3E-40 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0330 9fc57ffd5405041dcab0a063abc17f39 308 SUPERFAMILY SSF54593 1 274 4.01E-41 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0330 9fc57ffd5405041dcab0a063abc17f39 308 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 245 266 - T 12-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 Alide_0330 9fc57ffd5405041dcab0a063abc17f39 308 Gene3D G3DSA:3.10.180.10 1 131 5.1E-36 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0330 9fc57ffd5405041dcab0a063abc17f39 308 TIGRFAM TIGR03211 catechol_2_3: catechol 2,3 dioxygenase 5 308 4.0E-130 T 12-10-2018 IPR017624 Catechol 2,3 dioxygenase GO:0008198|GO:0018577|GO:0019439|GO:0055114 KEGG: 00361+1.13.11.2|KEGG: 00362+1.13.11.2|KEGG: 00622+1.13.11.2|KEGG: 00643+1.13.11.2|MetaCyc: PWY-5419|MetaCyc: PWY-5641 Alide_0330 9fc57ffd5405041dcab0a063abc17f39 308 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 151 266 2.7E-18 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Alide_0330 9fc57ffd5405041dcab0a063abc17f39 308 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 120 3.4E-8 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Alide_0326 1b693f74ae74329e887ff42efd0dcdf0 515 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 24 252 8.9E-69 T 12-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 Alide_0326 1b693f74ae74329e887ff42efd0dcdf0 515 SUPERFAMILY SSF47240 7 512 2.92E-161 T 12-10-2018 IPR009078 Ferritin-like superfamily Alide_0326 1b693f74ae74329e887ff42efd0dcdf0 515 Pfam PF04945 YHS domain 410 452 5.8E-16 T 12-10-2018 IPR007029 YHS domain Alide_0326 1b693f74ae74329e887ff42efd0dcdf0 515 Gene3D G3DSA:1.10.620.20 3 515 3.2E-207 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 Alide_2064 499b0e8f163e5fd9e93b5299419448d6 65 TIGRFAM TIGR04111 BcepMu_gp16: phage-associated protein, BcepMu gp16 family 9 61 2.0E-20 T 12-10-2018 IPR026365 Phage-associated protein, BcepMu gp16 family Alide_2064 499b0e8f163e5fd9e93b5299419448d6 65 SUPERFAMILY SSF47413 8 64 6.22E-5 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_1049 292e7703c4571200ebc9db96f225b368 417 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 6 417 6.4E-182 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1049 292e7703c4571200ebc9db96f225b368 417 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 417 49.777 T 12-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1049 292e7703c4571200ebc9db96f225b368 417 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 43 54 - T 12-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1049 292e7703c4571200ebc9db96f225b368 417 Gene3D G3DSA:1.10.645.20 4 417 2.0E-172 T 12-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1049 292e7703c4571200ebc9db96f225b368 417 SUPERFAMILY SSF56762 16 417 3.4E-135 T 12-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1049 292e7703c4571200ebc9db96f225b368 417 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 417 5.2E-123 T 12-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 Gene3D G3DSA:3.40.50.720 2 138 3.6E-38 T 12-10-2018 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 SUPERFAMILY SSF51735 1 150 1.08E-27 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 Pfam PF02080 TrkA-C domain 155 227 2.0E-6 T 12-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.0E-20 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.0E-20 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.0E-20 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.0E-20 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.0E-20 T 12-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 SUPERFAMILY SSF51735 241 388 7.88E-24 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 Gene3D G3DSA:3.40.50.720 241 378 2.5E-29 T 12-10-2018 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 SUPERFAMILY SSF116726 136 226 8.63E-6 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 Gene3D G3DSA:3.30.70.1450 139 232 1.4E-15 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 Pfam PF02254 TrkA-N domain 3 115 4.1E-22 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 Pfam PF02254 TrkA-N domain 243 362 3.7E-19 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Alide_4103 b9b50201e7486ff426a78a1f184999cb 491 Gene3D G3DSA:3.30.70.1450 379 491 3.4E-27 T 12-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Alide_3528 afb53113eb817ff0f1bd8417f243d017 631 Pfam PF01103 Surface antigen 419 630 1.0E-26 T 12-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Alide_3528 afb53113eb817ff0f1bd8417f243d017 631 Gene3D G3DSA:2.40.160.50 312 630 1.0E-53 T 12-10-2018 Alide_3528 afb53113eb817ff0f1bd8417f243d017 631 Pfam PF17243 POTRA domain TamA domain 1 57 138 8.8E-7 T 12-10-2018 IPR035243 TamA, POTRA domain 1 Alide_3528 afb53113eb817ff0f1bd8417f243d017 631 Gene3D G3DSA:3.10.20.310 235 310 4.9E-12 T 12-10-2018 Alide_0370 c6ca8960ade0ae4cab987467f5f565ba 266 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 6 255 8.2E-18 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Alide_0370 c6ca8960ade0ae4cab987467f5f565ba 266 Gene3D G3DSA:3.60.10.10 2 265 1.3E-72 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Alide_0370 c6ca8960ade0ae4cab987467f5f565ba 266 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 3 260 1.7E-65 T 12-10-2018 Alide_0370 c6ca8960ade0ae4cab987467f5f565ba 266 SUPERFAMILY SSF56219 2 262 1.57E-67 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Alide_0370 c6ca8960ade0ae4cab987467f5f565ba 266 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 3 261 1.2E-68 T 12-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Alide_3168 a186de2a6179f814973c514d7a77bd58 360 Gene3D G3DSA:3.20.20.300 1 359 1.4E-112 T 12-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 Alide_3168 a186de2a6179f814973c514d7a77bd58 360 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 9 310 1.5E-67 T 12-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Alide_3168 a186de2a6179f814973c514d7a77bd58 360 SUPERFAMILY SSF51445 6 334 8.84E-77 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily Alide_3168 a186de2a6179f814973c514d7a77bd58 360 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 6 360 49.608 T 12-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 Alide_1597 a1a87114423848380120c7bd635dd0e2 324 Gene3D G3DSA:3.40.190.10 128 249 4.6E-109 T 12-10-2018 Alide_1597 a1a87114423848380120c7bd635dd0e2 324 PIRSF PIRSF017082 3 324 5.1E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1597 a1a87114423848380120c7bd635dd0e2 324 Gene3D G3DSA:3.40.190.150 31 314 4.6E-109 T 12-10-2018 Alide_1597 a1a87114423848380120c7bd635dd0e2 324 SUPERFAMILY SSF53850 115 284 8.38E-12 T 12-10-2018 Alide_1597 a1a87114423848380120c7bd635dd0e2 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 319 7.2E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0460 11abb8b504727eda042b9ba5dd0387fa 168 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 160 26.147 T 12-10-2018 IPR022973 Ribosomal protein L10 Alide_0460 11abb8b504727eda042b9ba5dd0387fa 168 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 12-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0460 11abb8b504727eda042b9ba5dd0387fa 168 SUPERFAMILY SSF160369 4 159 4.32E-48 T 12-10-2018 Alide_0460 11abb8b504727eda042b9ba5dd0387fa 168 Pfam PF00466 Ribosomal protein L10 4 100 3.7E-23 T 12-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 Alide_0460 11abb8b504727eda042b9ba5dd0387fa 168 Gene3D G3DSA:3.30.70.1730 3 132 1.6E-34 T 12-10-2018 Alide_4207 8132b9466ae905b1529d11e6584a8a9d 168 Pfam PF12802 MarR family 42 103 2.2E-12 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_4207 8132b9466ae905b1529d11e6584a8a9d 168 Gene3D G3DSA:1.10.10.10 3 155 5.0E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4207 8132b9466ae905b1529d11e6584a8a9d 168 SMART SM00347 36 140 5.6E-21 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_4207 8132b9466ae905b1529d11e6584a8a9d 168 SUPERFAMILY SSF46785 7 157 1.03E-28 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4207 8132b9466ae905b1529d11e6584a8a9d 168 ProSitePatterns PS01117 MarR-type HTH domain signature. 78 112 - T 12-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Alide_0833 97e0d2e85cbadf34a600b2b37a84d4aa 332 SUPERFAMILY SSF56524 76 328 2.62E-92 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Alide_0833 97e0d2e85cbadf34a600b2b37a84d4aa 332 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 10 332 54.672 T 12-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 Alide_0833 97e0d2e85cbadf34a600b2b37a84d4aa 332 Pfam PF00174 Oxidoreductase molybdopterin binding domain 111 266 1.4E-31 T 12-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Alide_0833 97e0d2e85cbadf34a600b2b37a84d4aa 332 Gene3D G3DSA:3.90.420.10 74 332 5.5E-107 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Alide_3508 182fe482ae93a86a67fbf83aa4c42d15 274 Gene3D G3DSA:3.40.190.10 135 233 9.5E-49 T 12-10-2018 Alide_3508 182fe482ae93a86a67fbf83aa4c42d15 274 SUPERFAMILY SSF53850 54 258 3.08E-33 T 12-10-2018 Alide_3508 182fe482ae93a86a67fbf83aa4c42d15 274 Pfam PF03466 LysR substrate binding domain 60 262 5.2E-20 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3508 182fe482ae93a86a67fbf83aa4c42d15 274 Gene3D G3DSA:3.40.190.10 56 257 9.5E-49 T 12-10-2018 Alide_3508 182fe482ae93a86a67fbf83aa4c42d15 274 Gene3D G3DSA:1.10.10.10 1 51 3.3E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4316 e1b09f4c6e3f0314b9f937bdd5cf266c 705 SUPERFAMILY SSF56935 59 705 6.72E-90 T 12-10-2018 Alide_4316 e1b09f4c6e3f0314b9f937bdd5cf266c 705 Gene3D G3DSA:2.40.170.20 180 705 4.3E-70 T 12-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Alide_4316 e1b09f4c6e3f0314b9f937bdd5cf266c 705 Gene3D G3DSA:2.170.130.10 62 178 4.4E-14 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_4316 e1b09f4c6e3f0314b9f937bdd5cf266c 705 Pfam PF00593 TonB dependent receptor 223 703 9.9E-45 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_4316 e1b09f4c6e3f0314b9f937bdd5cf266c 705 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 72 705 1.2E-242 T 12-10-2018 IPR010100 TonB-dependent copper receptor Alide_4316 e1b09f4c6e3f0314b9f937bdd5cf266c 705 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 171 4.8E-12 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_0764 34a94db5f4d8a1e1b20d419a947f8ccd 280 Pfam PF12697 Alpha/beta hydrolase family 35 259 1.5E-9 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0764 34a94db5f4d8a1e1b20d419a947f8ccd 280 SUPERFAMILY SSF53474 10 277 9.97E-26 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0764 34a94db5f4d8a1e1b20d419a947f8ccd 280 TIGRFAM TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1 5 276 2.2E-89 T 12-10-2018 IPR017531 Hydrolase, ortholog 1, exosortase system type 1 associated Alide_0764 34a94db5f4d8a1e1b20d419a947f8ccd 280 Gene3D G3DSA:3.40.50.1820 10 280 3.7E-25 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4546 ba4d4f49a3e59874771921929947dbdc 271 Pfam PF08238 Sel1 repeat 182 217 9.7E-4 T 12-10-2018 IPR006597 Sel1-like repeat Alide_4546 ba4d4f49a3e59874771921929947dbdc 271 Pfam PF08238 Sel1 repeat 219 253 9.7E-4 T 12-10-2018 IPR006597 Sel1-like repeat Alide_4546 ba4d4f49a3e59874771921929947dbdc 271 Pfam PF08238 Sel1 repeat 146 180 0.5 T 12-10-2018 IPR006597 Sel1-like repeat Alide_4546 ba4d4f49a3e59874771921929947dbdc 271 Pfam PF08238 Sel1 repeat 96 112 110.0 T 12-10-2018 IPR006597 Sel1-like repeat Alide_4546 ba4d4f49a3e59874771921929947dbdc 271 Gene3D G3DSA:1.25.40.10 65 269 8.8E-34 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_4546 ba4d4f49a3e59874771921929947dbdc 271 SUPERFAMILY SSF81901 84 261 2.79E-26 T 12-10-2018 Alide_4546 ba4d4f49a3e59874771921929947dbdc 271 SMART SM00671 145 181 5.3E-4 T 12-10-2018 IPR006597 Sel1-like repeat Alide_4546 ba4d4f49a3e59874771921929947dbdc 271 SMART SM00671 218 253 0.0014 T 12-10-2018 IPR006597 Sel1-like repeat Alide_4546 ba4d4f49a3e59874771921929947dbdc 271 SMART SM00671 182 217 4.3E-4 T 12-10-2018 IPR006597 Sel1-like repeat Alide_4131 616c85b517f38c0bf83e762e0fb85cbb 318 SUPERFAMILY SSF52266 59 317 1.07E-7 T 12-10-2018 Alide_4131 616c85b517f38c0bf83e762e0fb85cbb 318 Gene3D G3DSA:3.40.50.1110 27 318 2.8E-44 T 12-10-2018 IPR036514 SGNH hydrolase superfamily Alide_4131 616c85b517f38c0bf83e762e0fb85cbb 318 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 39 231 2.8E-5 T 12-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 Alide_0107 bfbec22f5e1c7ff82a9a9cb41e93c6d5 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 71 1.6E-14 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0107 bfbec22f5e1c7ff82a9a9cb41e93c6d5 221 Gene3D G3DSA:1.10.357.10 20 190 3.2E-26 T 12-10-2018 Alide_0107 bfbec22f5e1c7ff82a9a9cb41e93c6d5 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 1.8E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0107 bfbec22f5e1c7ff82a9a9cb41e93c6d5 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 1.8E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0107 bfbec22f5e1c7ff82a9a9cb41e93c6d5 221 SUPERFAMILY SSF46689 16 88 6.14E-17 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0107 bfbec22f5e1c7ff82a9a9cb41e93c6d5 221 SUPERFAMILY SSF48498 89 205 8.9E-5 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_0107 bfbec22f5e1c7ff82a9a9cb41e93c6d5 221 ProSitePatterns PS01081 TetR-type HTH domain signature. 38 68 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Alide_3620 81eedd36364174b592269d181c0ec855 116 Gene3D G3DSA:3.40.30.10 1 116 2.6E-47 T 12-10-2018 Alide_3620 81eedd36364174b592269d181c0ec855 116 SUPERFAMILY SSF52833 3 116 1.18E-33 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3620 81eedd36364174b592269d181c0ec855 116 Pfam PF03960 ArsC family 7 112 8.8E-16 T 12-10-2018 IPR006660 Arsenate reductase-like Alide_3620 81eedd36364174b592269d181c0ec855 116 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 3.4E-43 T 12-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 Alide_2025 0bf53dbb6cb37b8bf4fc37ee84e14c3a 188 Gene3D G3DSA:3.30.70.1560 71 171 2.3E-41 T 12-10-2018 Alide_2025 0bf53dbb6cb37b8bf4fc37ee84e14c3a 188 SUPERFAMILY SSF55120 6 179 1.14E-39 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_2025 0bf53dbb6cb37b8bf4fc37ee84e14c3a 188 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 42 56 - T 12-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Alide_2025 0bf53dbb6cb37b8bf4fc37ee84e14c3a 188 Pfam PF00849 RNA pseudouridylate synthase 7 152 2.7E-14 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_2025 0bf53dbb6cb37b8bf4fc37ee84e14c3a 188 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 11 181 4.4E-49 T 12-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Alide_2025 0bf53dbb6cb37b8bf4fc37ee84e14c3a 188 Gene3D G3DSA:3.30.70.580 1 70 8.0E-22 T 12-10-2018 Alide_1412 09cedc746f76d337c28753db0399485d 305 Gene3D G3DSA:3.40.190.290 96 299 1.4E-34 T 12-10-2018 Alide_1412 09cedc746f76d337c28753db0399485d 305 Pfam PF03466 LysR substrate binding domain 93 297 7.2E-33 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1412 09cedc746f76d337c28753db0399485d 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 68 1.8E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1412 09cedc746f76d337c28753db0399485d 305 Gene3D G3DSA:1.10.10.10 7 93 1.2E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1412 09cedc746f76d337c28753db0399485d 305 SUPERFAMILY SSF53850 94 302 3.26E-35 T 12-10-2018 Alide_1412 09cedc746f76d337c28753db0399485d 305 SUPERFAMILY SSF46785 5 116 6.53E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3448 75230e87f4ee75c2751531b2763a1109 196 SUPERFAMILY SSF53335 12 187 1.88E-41 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_3448 75230e87f4ee75c2751531b2763a1109 196 Pfam PF03602 Conserved hypothetical protein 95 12 186 1.8E-41 T 12-10-2018 Alide_3448 75230e87f4ee75c2751531b2763a1109 196 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 5 187 6.1E-39 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Alide_3448 75230e87f4ee75c2751531b2763a1109 196 PIRSF PIRSF004553 11 190 3.7E-38 T 12-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Alide_3448 75230e87f4ee75c2751531b2763a1109 196 Gene3D G3DSA:3.40.50.150 2 195 7.8E-46 T 12-10-2018 Alide_1411 07a2e4e183874d69f6c3388847b00693 336 SUPERFAMILY SSF51726 3 330 2.35E-45 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Alide_1411 07a2e4e183874d69f6c3388847b00693 336 Gene3D G3DSA:3.20.20.210 1 329 1.3E-60 T 12-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Alide_1411 07a2e4e183874d69f6c3388847b00693 336 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 7 328 5.4E-29 T 12-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Alide_3938 71ba21522e8973324377bf8a3be43391 137 Pfam PF00989 PAS fold 12 121 1.6E-14 T 12-10-2018 IPR013767 PAS fold GO:0006355 Alide_3938 71ba21522e8973324377bf8a3be43391 137 Gene3D G3DSA:3.30.450.20 18 130 1.5E-24 T 12-10-2018 Alide_3938 71ba21522e8973324377bf8a3be43391 137 SMART SM00091 9 75 7.8E-8 T 12-10-2018 IPR000014 PAS domain Alide_3938 71ba21522e8973324377bf8a3be43391 137 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 130 2.4E-23 T 12-10-2018 IPR000014 PAS domain Alide_3938 71ba21522e8973324377bf8a3be43391 137 SUPERFAMILY SSF55785 20 134 2.09E-24 T 12-10-2018 IPR035965 PAS domain superfamily Alide_3938 71ba21522e8973324377bf8a3be43391 137 SMART SM00086 83 125 6.4E-4 T 12-10-2018 IPR001610 PAC motif Alide_1166 2e93bf7e92bb55520e5549e7a0ab48fd 272 Pfam PF00293 NUDIX domain 129 253 5.1E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Alide_1166 2e93bf7e92bb55520e5549e7a0ab48fd 272 Gene3D G3DSA:3.30.750.160 27 213 2.2E-38 T 12-10-2018 Alide_1166 2e93bf7e92bb55520e5549e7a0ab48fd 272 Gene3D G3DSA:3.90.79.10 125 266 2.2E-38 T 12-10-2018 Alide_1166 2e93bf7e92bb55520e5549e7a0ab48fd 272 SUPERFAMILY SSF55811 100 268 1.21E-26 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 Pfam PF00717 Peptidase S24-like 126 208 1.0E-20 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 105 313 1.7E-50 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 Gene3D G3DSA:2.10.109.10 118 314 1.4E-74 T 12-10-2018 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 120 136 7.8E-26 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 184 196 7.8E-26 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 274 293 7.8E-26 T 12-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 Gene3D G3DSA:2.170.230.10 195 273 1.4E-74 T 12-10-2018 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 ProSitePatterns PS00760 Signal peptidases I lysine active site. 186 198 - T 12-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 ProSitePatterns PS00501 Signal peptidases I serine active site. 129 136 - T 12-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 ProSitePatterns PS00761 Signal peptidases I signature 3. 279 292 - T 12-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 Pfam PF10502 Signal peptidase, peptidase S26 272 311 1.1E-7 T 12-10-2018 IPR019533 Peptidase S26 Alide_3175 ef8e7f1015aa574dc8b400a4b6d19246 324 SUPERFAMILY SSF51306 118 320 1.18E-70 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_3099 a9cefc0e4e36b4447207d950ffdc1e12 442 PIRSF PIRSF000521 124 430 1.1E-24 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_3099 a9cefc0e4e36b4447207d950ffdc1e12 442 PIRSF PIRSF000521 4 132 3.9E-8 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_3099 a9cefc0e4e36b4447207d950ffdc1e12 442 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 275 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_3099 a9cefc0e4e36b4447207d950ffdc1e12 442 SUPERFAMILY SSF53383 19 429 2.69E-107 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3099 a9cefc0e4e36b4447207d950ffdc1e12 442 Gene3D G3DSA:3.90.1150.10 28 422 1.9E-125 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_3099 a9cefc0e4e36b4447207d950ffdc1e12 442 Gene3D G3DSA:3.40.640.10 57 322 1.9E-125 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3099 a9cefc0e4e36b4447207d950ffdc1e12 442 Pfam PF00202 Aminotransferase class-III 23 427 1.2E-83 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_1755 84868d10712e2b1f388041d1bc569bd8 197 Pfam PF03641 Possible lysine decarboxylase 50 178 1.8E-38 T 12-10-2018 IPR031100 LOG family Alide_1755 84868d10712e2b1f388041d1bc569bd8 197 SUPERFAMILY SSF102405 6 180 2.75E-58 T 12-10-2018 Alide_1755 84868d10712e2b1f388041d1bc569bd8 197 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 7 178 1.4E-56 T 12-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG Alide_1755 84868d10712e2b1f388041d1bc569bd8 197 Gene3D G3DSA:3.40.50.450 2 189 5.8E-67 T 12-10-2018 Alide_2356 2609ba66f5ca1bfd32d83bf645dc7e10 135 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 124 3.3E-19 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Alide_2356 2609ba66f5ca1bfd32d83bf645dc7e10 135 Gene3D G3DSA:3.10.50.30 45 135 3.7E-29 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Alide_2356 2609ba66f5ca1bfd32d83bf645dc7e10 135 SUPERFAMILY SSF54534 49 125 2.88E-18 T 12-10-2018 Alide_2356 2609ba66f5ca1bfd32d83bf645dc7e10 135 Pfam PF14760 Rnk N-terminus 5 43 6.5E-13 T 12-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain Alide_2356 2609ba66f5ca1bfd32d83bf645dc7e10 135 Gene3D G3DSA:1.10.286.20 1 44 1.8E-15 T 12-10-2018 Alide_2356 2609ba66f5ca1bfd32d83bf645dc7e10 135 PIRSF PIRSF006092 7 27 2700.0 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Alide_2356 2609ba66f5ca1bfd32d83bf645dc7e10 135 PIRSF PIRSF006092 30 127 2.3E-24 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 Gene3D G3DSA:3.10.580.10 192 345 1.4E-44 T 12-10-2018 Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 SMART SM00116 284 332 0.0089 T 12-10-2018 IPR000644 CBS domain Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 SMART SM00116 220 269 53.0 T 12-10-2018 IPR000644 CBS domain Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 Gene3D G3DSA:3.30.465.10 346 428 2.5E-32 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 SUPERFAMILY SSF56176 344 430 3.27E-21 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 Pfam PF00571 CBS domain 275 332 2.7E-7 T 12-10-2018 IPR000644 CBS domain Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 Pfam PF01595 Domain of unknown function DUF21 5 196 1.3E-45 T 12-10-2018 IPR002550 CNNM, transmembrane domain Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 Pfam PF03471 Transporter associated domain 347 427 4.0E-21 T 12-10-2018 IPR005170 Transporter-associated domain Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 SUPERFAMILY SSF54631 198 335 5.68E-28 T 12-10-2018 Alide_3362 a447b4e18468d9c9d5cefdb504e60763 442 SMART SM01091 346 428 1.1E-26 T 12-10-2018 IPR005170 Transporter-associated domain Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 Pfam PF13180 PDZ domain 102 179 5.3E-15 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 Gene3D G3DSA:2.30.42.10 100 187 2.7E-90 T 12-10-2018 Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 53 384 2.2E-98 T 12-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 Pfam PF03572 Peptidase family S41 199 377 1.0E-49 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 SUPERFAMILY SSF50156 93 183 4.12E-20 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 Gene3D G3DSA:3.90.226.10 188 377 2.7E-90 T 12-10-2018 Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 SUPERFAMILY SSF52096 38 388 4.31E-74 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 SMART SM00245 173 380 4.7E-62 T 12-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 SMART SM00228 100 171 8.5E-17 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_3439 e9f9a9da5dbc17a2c2fe32fc8d7a0892 478 Gene3D G3DSA:3.30.750.44 51 355 2.7E-90 T 12-10-2018 Alide_0185 3e27328f8516d961a12b5cbc8624ca4e 249 SUPERFAMILY SSF55781 78 241 2.16E-18 T 12-10-2018 Alide_0185 3e27328f8516d961a12b5cbc8624ca4e 249 Gene3D G3DSA:1.10.10.10 8 82 2.5E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0185 3e27328f8516d961a12b5cbc8624ca4e 249 Pfam PF09339 IclR helix-turn-helix domain 12 63 7.7E-9 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0185 3e27328f8516d961a12b5cbc8624ca4e 249 Gene3D G3DSA:3.30.450.40 83 242 1.2E-14 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0185 3e27328f8516d961a12b5cbc8624ca4e 249 SUPERFAMILY SSF46785 11 84 4.96E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0185 3e27328f8516d961a12b5cbc8624ca4e 249 SMART SM00346 10 101 4.5E-17 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2725 32d9a878e2b3d31068159fd70b627e7c 298 Pfam PF03466 LysR substrate binding domain 90 291 3.9E-32 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2725 32d9a878e2b3d31068159fd70b627e7c 298 Gene3D G3DSA:3.40.190.290 93 293 8.0E-29 T 12-10-2018 Alide_2725 32d9a878e2b3d31068159fd70b627e7c 298 Gene3D G3DSA:1.10.10.10 1 92 3.6E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2725 32d9a878e2b3d31068159fd70b627e7c 298 SUPERFAMILY SSF53850 92 291 6.21E-31 T 12-10-2018 Alide_2725 32d9a878e2b3d31068159fd70b627e7c 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2725 32d9a878e2b3d31068159fd70b627e7c 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2725 32d9a878e2b3d31068159fd70b627e7c 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.0E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2725 32d9a878e2b3d31068159fd70b627e7c 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.2E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2725 32d9a878e2b3d31068159fd70b627e7c 298 SUPERFAMILY SSF46785 1 85 2.44E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0540 90b44c3ceed9972ff5bc8e4a107c5c15 415 Pfam PF00501 AMP-binding enzyme 123 280 1.2E-12 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0540 90b44c3ceed9972ff5bc8e4a107c5c15 415 SUPERFAMILY SSF56801 113 385 1.31E-34 T 12-10-2018 Alide_0540 90b44c3ceed9972ff5bc8e4a107c5c15 415 Gene3D G3DSA:3.40.50.12780 1 319 1.3E-68 T 12-10-2018 Alide_0540 90b44c3ceed9972ff5bc8e4a107c5c15 415 Gene3D G3DSA:3.30.300.30 320 413 1.5E-13 T 12-10-2018 Alide_1750 c6bef8677fe580e87355cda918643c01 585 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 1.4E-61 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_1750 c6bef8677fe580e87355cda918643c01 585 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 1.4E-61 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_1750 c6bef8677fe580e87355cda918643c01 585 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 1.4E-61 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_1750 c6bef8677fe580e87355cda918643c01 585 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 1.4E-61 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_1750 c6bef8677fe580e87355cda918643c01 585 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 1.4E-61 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_1750 c6bef8677fe580e87355cda918643c01 585 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 185 3.7E-19 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Alide_1750 c6bef8677fe580e87355cda918643c01 585 SMART SM00304 212 264 2.1E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_1750 c6bef8677fe580e87355cda918643c01 585 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 479 1.4E-53 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_1750 c6bef8677fe580e87355cda918643c01 585 Pfam PF00672 HAMP domain 212 260 1.3E-12 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_1750 c6bef8677fe580e87355cda918643c01 585 SUPERFAMILY SSF58104 232 513 2.75E-72 T 12-10-2018 Alide_1750 c6bef8677fe580e87355cda918643c01 585 SMART SM00283 265 512 8.0E-89 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_1750 c6bef8677fe580e87355cda918643c01 585 Gene3D G3DSA:1.10.287.950 212 514 2.3E-89 T 12-10-2018 Alide_1582 010d9732504703ffff56da82a78140dc 112 SMART SM00450 8 107 3.9E-12 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_1582 010d9732504703ffff56da82a78140dc 112 SUPERFAMILY SSF52821 4 110 3.14E-23 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_1582 010d9732504703ffff56da82a78140dc 112 Pfam PF00581 Rhodanese-like domain 11 103 2.9E-8 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_1582 010d9732504703ffff56da82a78140dc 112 Gene3D G3DSA:3.40.250.10 1 110 4.2E-20 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_2149 c114a2d5da76287d05aa5cbdc2ce7b64 239 Gene3D G3DSA:3.30.70.980 86 236 8.3E-54 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2149 c114a2d5da76287d05aa5cbdc2ce7b64 239 SUPERFAMILY SSF75625 3 238 9.16E-96 T 12-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2149 c114a2d5da76287d05aa5cbdc2ce7b64 239 Pfam PF01709 Transcriptional regulator 5 237 5.9E-94 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2149 c114a2d5da76287d05aa5cbdc2ce7b64 239 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 36.056 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2149 c114a2d5da76287d05aa5cbdc2ce7b64 239 Gene3D G3DSA:3.30.70.980 130 205 8.3E-54 T 12-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2149 c114a2d5da76287d05aa5cbdc2ce7b64 239 Gene3D G3DSA:1.10.10.200 1 80 3.4E-32 T 12-10-2018 IPR017856 Integrase-like, N-terminal Alide_2149 c114a2d5da76287d05aa5cbdc2ce7b64 239 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 2 238 1.6E-93 T 12-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2603 21978d799dc1a34cac209cf9d845160e 358 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 56 93 - T 12-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Alide_2603 21978d799dc1a34cac209cf9d845160e 358 Pfam PF14437 MafB19-like deaminase 6 152 6.6E-34 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Alide_2603 21978d799dc1a34cac209cf9d845160e 358 Pfam PF00561 alpha/beta hydrolase fold 212 282 3.3E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2603 21978d799dc1a34cac209cf9d845160e 358 SUPERFAMILY SSF53927 4 153 8.36E-58 T 12-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Alide_2603 21978d799dc1a34cac209cf9d845160e 358 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 11 152 50.528 T 12-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Alide_2603 21978d799dc1a34cac209cf9d845160e 358 SUPERFAMILY SSF53474 177 284 1.47E-23 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2603 21978d799dc1a34cac209cf9d845160e 358 Gene3D G3DSA:3.40.140.10 2 163 9.8E-65 T 12-10-2018 Alide_2603 21978d799dc1a34cac209cf9d845160e 358 PRINTS PR00412 Epoxide hydrolase signature 215 233 8.1E-6 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_2603 21978d799dc1a34cac209cf9d845160e 358 PRINTS PR00412 Epoxide hydrolase signature 235 250 8.1E-6 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_2603 21978d799dc1a34cac209cf9d845160e 358 Gene3D G3DSA:3.40.50.1820 164 284 5.7E-33 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_3335 54339c17fa1804cbdae61c6a5838e593 475 Gene3D G3DSA:3.40.630.150 191 475 7.6E-107 T 12-10-2018 Alide_3335 54339c17fa1804cbdae61c6a5838e593 475 Pfam PF05292 Malonyl-CoA decarboxylase C-terminal domain 192 447 2.2E-107 T 12-10-2018 IPR007956 Malonyl-CoA decarboxylase, C-terminal GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 Alide_3335 54339c17fa1804cbdae61c6a5838e593 475 Pfam PF17408 Malonyl-CoA decarboxylase N-terminal domain 102 189 9.7E-25 T 12-10-2018 IPR035372 Malonyl-CoA decarboxylase, N-terminal KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 Alide_3335 54339c17fa1804cbdae61c6a5838e593 475 Gene3D G3DSA:1.20.140.90 48 190 1.3E-29 T 12-10-2018 IPR038351 Malonyl-CoA decarboxylase, N-terminal domain superfamily KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 Alide_2791 20a5f6f8648a605bb19743acac1c35a5 300 Gene3D G3DSA:1.10.10.10 3 90 2.9E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2791 20a5f6f8648a605bb19743acac1c35a5 300 Pfam PF03466 LysR substrate binding domain 89 294 1.6E-37 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2791 20a5f6f8648a605bb19743acac1c35a5 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 1.3E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2791 20a5f6f8648a605bb19743acac1c35a5 300 SUPERFAMILY SSF46785 3 112 3.89E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2791 20a5f6f8648a605bb19743acac1c35a5 300 Gene3D G3DSA:3.40.190.290 92 299 1.2E-40 T 12-10-2018 Alide_2791 20a5f6f8648a605bb19743acac1c35a5 300 SUPERFAMILY SSF53850 90 297 1.3E-39 T 12-10-2018 Alide_1161 b01431adadf1cb6740a128399e4872dc 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.5E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1161 b01431adadf1cb6740a128399e4872dc 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 96 107 5.5E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1161 b01431adadf1cb6740a128399e4872dc 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 5.5E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1161 b01431adadf1cb6740a128399e4872dc 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 159 5.5E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1161 b01431adadf1cb6740a128399e4872dc 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 235 255 5.5E-21 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1161 b01431adadf1cb6740a128399e4872dc 276 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 270 2.3E-32 T 12-10-2018 Alide_1161 b01431adadf1cb6740a128399e4872dc 276 SUPERFAMILY SSF51735 7 271 1.6E-53 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1161 b01431adadf1cb6740a128399e4872dc 276 Gene3D G3DSA:3.40.50.720 1 276 6.6E-54 T 12-10-2018 Alide_1313 d4b85ba7bc2059809507bbcdcabc6bed 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 237 2.9E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_1313 d4b85ba7bc2059809507bbcdcabc6bed 243 SUPERFAMILY SSF52172 8 131 1.71E-43 T 12-10-2018 IPR011006 CheY-like superfamily Alide_1313 d4b85ba7bc2059809507bbcdcabc6bed 243 SMART SM00448 9 120 2.6E-44 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1313 d4b85ba7bc2059809507bbcdcabc6bed 243 Gene3D G3DSA:3.40.50.2300 6 134 5.6E-40 T 12-10-2018 Alide_1313 d4b85ba7bc2059809507bbcdcabc6bed 243 Pfam PF00072 Response regulator receiver domain 11 120 2.0E-32 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1313 d4b85ba7bc2059809507bbcdcabc6bed 243 SMART SM00862 161 237 1.3E-23 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_1313 d4b85ba7bc2059809507bbcdcabc6bed 243 SUPERFAMILY SSF46894 138 239 5.39E-27 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_1313 d4b85ba7bc2059809507bbcdcabc6bed 243 Gene3D G3DSA:1.10.10.10 135 243 1.3E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0147 5d1e45f6e11eda0995b679e441086519 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 326 6.3E-55 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0147 5d1e45f6e11eda0995b679e441086519 329 Gene3D G3DSA:3.40.190.10 128 255 5.5E-80 T 12-10-2018 Alide_0147 5d1e45f6e11eda0995b679e441086519 329 SUPERFAMILY SSF53850 95 292 1.52E-8 T 12-10-2018 Alide_0147 5d1e45f6e11eda0995b679e441086519 329 PIRSF PIRSF017082 5 329 2.3E-63 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0147 5d1e45f6e11eda0995b679e441086519 329 Gene3D G3DSA:3.40.190.150 38 320 5.5E-80 T 12-10-2018 Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 4.3E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.3E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.3E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 4.3E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 238 258 4.3E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.3E-34 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 Gene3D G3DSA:3.40.50.720 3 276 1.6E-72 T 12-10-2018 Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 275 6.6E-47 T 12-10-2018 Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 SUPERFAMILY SSF51735 6 275 4.0E-71 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.9E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 4.9E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 4.9E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_1814 9b41ae009d3fcc83d4a79e7bd683cc69 277 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 202 7.1E-4 T 12-10-2018 Alide_3721 ef0b6e153c2ffe667ffc924a5883d6da 371 Gene3D G3DSA:1.10.150.500 296 371 1.1E-36 T 12-10-2018 IPR038125 HTHP domain superfamily Alide_3721 ef0b6e153c2ffe667ffc924a5883d6da 371 Pfam PF11534 Hexameric tyrosine-coordinated heme protein (HTHP) 299 370 6.7E-35 T 12-10-2018 IPR021111 Hexameric tyrosine-coordinated heme protein (HTHP) Alide_3721 ef0b6e153c2ffe667ffc924a5883d6da 371 Pfam PF00072 Response regulator receiver domain 8 117 2.0E-14 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3721 ef0b6e153c2ffe667ffc924a5883d6da 371 SMART SM00448 6 117 6.6E-17 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3721 ef0b6e153c2ffe667ffc924a5883d6da 371 Gene3D G3DSA:1.20.120.160 140 232 5.4E-9 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3721 ef0b6e153c2ffe667ffc924a5883d6da 371 SUPERFAMILY SSF52172 6 126 7.97E-26 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3721 ef0b6e153c2ffe667ffc924a5883d6da 371 Gene3D G3DSA:3.40.50.2300 5 139 2.9E-22 T 12-10-2018 Alide_3721 ef0b6e153c2ffe667ffc924a5883d6da 371 SUPERFAMILY SSF47226 103 215 3.14E-13 T 12-10-2018 IPR036641 HPT domain superfamily GO:0000160 Alide_3774 039427818a593e7202feed0d3d0adf47 504 Pfam PF13005 zinc-finger binding domain of transposase IS66 116 158 1.0E-12 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 Alide_3774 039427818a593e7202feed0d3d0adf47 504 Pfam PF03050 Transposase IS66 family 172 453 3.2E-103 T 12-10-2018 IPR004291 Transposase, IS66 Alide_3774 039427818a593e7202feed0d3d0adf47 504 Pfam PF13007 Transposase C of IS166 homeodomain 37 109 2.7E-13 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain Alide_3774 039427818a593e7202feed0d3d0adf47 504 Pfam PF13817 IS66 C-terminal element 460 497 4.2E-18 T 12-10-2018 IPR039552 Transposase IS66, C-terminal Alide_1873 039427818a593e7202feed0d3d0adf47 504 Pfam PF13005 zinc-finger binding domain of transposase IS66 116 158 1.0E-12 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 Alide_1873 039427818a593e7202feed0d3d0adf47 504 Pfam PF03050 Transposase IS66 family 172 453 3.2E-103 T 12-10-2018 IPR004291 Transposase, IS66 Alide_1873 039427818a593e7202feed0d3d0adf47 504 Pfam PF13007 Transposase C of IS166 homeodomain 37 109 2.7E-13 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain Alide_1873 039427818a593e7202feed0d3d0adf47 504 Pfam PF13817 IS66 C-terminal element 460 497 4.2E-18 T 12-10-2018 IPR039552 Transposase IS66, C-terminal Alide_4592 039427818a593e7202feed0d3d0adf47 504 Pfam PF13005 zinc-finger binding domain of transposase IS66 116 158 1.0E-12 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 Alide_4592 039427818a593e7202feed0d3d0adf47 504 Pfam PF03050 Transposase IS66 family 172 453 3.2E-103 T 12-10-2018 IPR004291 Transposase, IS66 Alide_4592 039427818a593e7202feed0d3d0adf47 504 Pfam PF13007 Transposase C of IS166 homeodomain 37 109 2.7E-13 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain Alide_4592 039427818a593e7202feed0d3d0adf47 504 Pfam PF13817 IS66 C-terminal element 460 497 4.2E-18 T 12-10-2018 IPR039552 Transposase IS66, C-terminal Alide_1520 039427818a593e7202feed0d3d0adf47 504 Pfam PF13005 zinc-finger binding domain of transposase IS66 116 158 1.0E-12 T 12-10-2018 IPR024474 Zinc-finger binding domain of transposase IS66 Alide_1520 039427818a593e7202feed0d3d0adf47 504 Pfam PF03050 Transposase IS66 family 172 453 3.2E-103 T 12-10-2018 IPR004291 Transposase, IS66 Alide_1520 039427818a593e7202feed0d3d0adf47 504 Pfam PF13007 Transposase C of IS166 homeodomain 37 109 2.7E-13 T 12-10-2018 IPR024463 Transposase TnpC, homeodomain Alide_1520 039427818a593e7202feed0d3d0adf47 504 Pfam PF13817 IS66 C-terminal element 460 497 4.2E-18 T 12-10-2018 IPR039552 Transposase IS66, C-terminal Alide_1782 dd15fb1e58faf5e203716caa3fb6df2b 300 Pfam PF02581 Thiamine monophosphate synthase 110 281 5.7E-47 T 12-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Alide_1782 dd15fb1e58faf5e203716caa3fb6df2b 300 Gene3D G3DSA:3.20.20.70 96 300 9.3E-51 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1782 dd15fb1e58faf5e203716caa3fb6df2b 300 SUPERFAMILY SSF51391 92 298 2.49E-55 T 12-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Alide_3036 f7fb1a206efcbf16b3eda671f64e2e27 429 Gene3D G3DSA:3.30.930.10 1 322 8.4E-121 T 12-10-2018 Alide_3036 f7fb1a206efcbf16b3eda671f64e2e27 429 Pfam PF13393 Histidyl-tRNA synthetase 9 311 5.1E-51 T 12-10-2018 Alide_3036 f7fb1a206efcbf16b3eda671f64e2e27 429 Gene3D G3DSA:3.40.50.800 325 421 3.8E-16 T 12-10-2018 IPR036621 Anticodon-binding domain superfamily Alide_3036 f7fb1a206efcbf16b3eda671f64e2e27 429 PIRSF PIRSF001549 1 424 1.8E-111 T 12-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Alide_3036 f7fb1a206efcbf16b3eda671f64e2e27 429 SUPERFAMILY SSF55681 7 319 1.55E-100 T 12-10-2018 Alide_3036 f7fb1a206efcbf16b3eda671f64e2e27 429 Pfam PF03129 Anticodon binding domain 338 422 6.1E-6 T 12-10-2018 IPR004154 Anticodon-binding Alide_3036 f7fb1a206efcbf16b3eda671f64e2e27 429 SUPERFAMILY SSF52954 328 421 2.45E-13 T 12-10-2018 Alide_3036 f7fb1a206efcbf16b3eda671f64e2e27 429 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 427 31.597 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Alide_3036 f7fb1a206efcbf16b3eda671f64e2e27 429 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 410 3.6E-146 T 12-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 13 465 5.7E-92 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 Pfam PF10396 GTP-binding protein TrmE N-terminus 8 127 5.2E-35 T 12-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 223 379 2.5E-18 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 Pfam PF01926 50S ribosome-binding GTPase 225 346 2.9E-22 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 SUPERFAMILY SSF116878 128 465 2.48E-49 T 12-10-2018 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 Gene3D G3DSA:1.20.120.430 129 465 2.4E-100 T 12-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 Gene3D G3DSA:3.30.1360.120 1 128 1.1E-39 T 12-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 Gene3D G3DSA:3.40.50.300 224 392 2.4E-100 T 12-10-2018 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 7 465 32.219 T 12-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 226 246 7.6E-6 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 275 290 7.6E-6 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 Pfam PF12631 MnmE helical domain 130 462 4.7E-58 T 12-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 Alide_4403 61e0fb34b18c7537054f5ef2b94f5759 465 SUPERFAMILY SSF52540 73 382 2.28E-44 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3593 02ebb4bcaa02759aeb6ad466f0145f94 350 SUPERFAMILY SSF56349 60 339 5.59E-46 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_3593 02ebb4bcaa02759aeb6ad466f0145f94 350 Pfam PF00589 Phage integrase family 176 333 1.1E-16 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_3593 02ebb4bcaa02759aeb6ad466f0145f94 350 Gene3D G3DSA:1.10.443.10 176 342 2.1E-25 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_0327 7b3c36013f8cd73f70549fb2d245a6df 118 Gene3D G3DSA:3.10.20.560 17 118 6.0E-39 T 12-10-2018 Alide_0327 7b3c36013f8cd73f70549fb2d245a6df 118 Pfam PF04663 Phenol hydroxylase conserved region 14 78 1.3E-29 T 12-10-2018 IPR006756 Phenol hydroxylase KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 187 4.2E-63 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 SUPERFAMILY SSF52413 306 435 9.55E-39 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 PIRSF PIRSF000124 1 439 1.2E-146 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 Gene3D G3DSA:3.40.50.720 235 446 2.7E-76 T 12-10-2018 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 Gene3D G3DSA:3.40.50.720 1 202 1.2E-78 T 12-10-2018 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 3.3E-135 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 3.3E-37 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 Gene3D G3DSA:1.20.5.100 203 234 4.3E-19 T 12-10-2018 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 423 2.0E-29 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 PIRSF PIRSF500134 1 442 5.7E-185 T 12-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 SUPERFAMILY SSF48179 204 298 4.22E-33 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 SMART SM00984 320 424 4.6E-48 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0481 ff31bf5dcfcf3c0f5719306f3a2e2498 446 SUPERFAMILY SSF51735 1 195 1.11E-55 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2548 473765b2cd461198a5a360f79cc3b9f2 561 Pfam PF01740 STAS domain 445 532 4.1E-10 T 12-10-2018 IPR002645 STAS domain Alide_2548 473765b2cd461198a5a360f79cc3b9f2 561 Gene3D G3DSA:3.30.750.24 431 557 3.7E-16 T 12-10-2018 IPR036513 STAS domain superfamily Alide_2548 473765b2cd461198a5a360f79cc3b9f2 561 Pfam PF00916 Sulfate permease family 23 385 3.8E-77 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Alide_2548 473765b2cd461198a5a360f79cc3b9f2 561 SUPERFAMILY SSF52091 443 552 1.16E-11 T 12-10-2018 IPR036513 STAS domain superfamily Alide_0340 8bc7ece5f8e4fbc8070e4df1396f02df 262 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 86 260 3.4E-7 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Alide_0340 8bc7ece5f8e4fbc8070e4df1396f02df 262 TIGRFAM TIGR03218 catechol_dmpH: 4-oxalocrotonate decarboxylase 1 261 5.4E-142 T 12-10-2018 IPR017630 4-oxalocrotonate decarboxylase KEGG: 00362+4.1.1.77|KEGG: 00621+4.1.1.77|KEGG: 00622+4.1.1.77|MetaCyc: PWY-5419|MetaCyc: PWY-5644|MetaCyc: PWY-5645|MetaCyc: PWY-5647|MetaCyc: PWY-5654|MetaCyc: PWY-6210|MetaCyc: PWY-6214|MetaCyc: PWY-6336|MetaCyc: PWY-7006|MetaCyc: PWY-7009|MetaCyc: PWY-7480 Alide_0340 8bc7ece5f8e4fbc8070e4df1396f02df 262 SUPERFAMILY SSF56529 3 261 4.19E-76 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_0340 8bc7ece5f8e4fbc8070e4df1396f02df 262 Gene3D G3DSA:3.90.850.10 1 262 6.1E-80 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_0375 bc04b34fa501c7f136f608835c3d79e9 99 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 94 1.5E-14 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Alide_0375 bc04b34fa501c7f136f608835c3d79e9 99 Gene3D G3DSA:1.10.20.60 1 97 3.8E-18 T 12-10-2018 Alide_0375 bc04b34fa501c7f136f608835c3d79e9 99 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 99 19.86 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Alide_0375 bc04b34fa501c7f136f608835c3d79e9 99 SUPERFAMILY SSF141000 3 97 1.02E-22 T 12-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 Alide_0375 bc04b34fa501c7f136f608835c3d79e9 99 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 5 99 1.2E-23 T 12-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Alide_1969 d7e4028cc00f0044e9baf27f165e129a 330 Gene3D G3DSA:3.40.190.10 128 254 2.0E-110 T 12-10-2018 Alide_1969 d7e4028cc00f0044e9baf27f165e129a 330 PIRSF PIRSF017082 1 329 1.4E-75 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1969 d7e4028cc00f0044e9baf27f165e129a 330 Gene3D G3DSA:3.40.190.150 30 320 2.0E-110 T 12-10-2018 Alide_1969 d7e4028cc00f0044e9baf27f165e129a 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 326 6.2E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1969 d7e4028cc00f0044e9baf27f165e129a 330 SUPERFAMILY SSF53850 119 289 7.76E-15 T 12-10-2018 Alide_0294 9441309f06151b5554cfaf4c3b43a68c 328 PIRSF PIRSF017082 1 327 1.0E-58 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0294 9441309f06151b5554cfaf4c3b43a68c 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 323 5.3E-55 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0294 9441309f06151b5554cfaf4c3b43a68c 328 Gene3D G3DSA:3.40.190.10 128 251 1.0E-81 T 12-10-2018 Alide_0294 9441309f06151b5554cfaf4c3b43a68c 328 Gene3D G3DSA:3.40.190.150 35 317 1.0E-81 T 12-10-2018 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 SUPERFAMILY SSF51735 7 198 2.58E-44 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 Gene3D G3DSA:3.40.50.720 203 406 3.1E-61 T 12-10-2018 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 Gene3D G3DSA:3.40.50.720 1 202 5.6E-64 T 12-10-2018 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 PIRSF PIRSF000124 6 406 1.6E-79 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 SUPERFAMILY SSF52413 307 405 2.75E-26 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 PIRSF PIRSF500136 1 406 1.3E-143 T 12-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 SUPERFAMILY SSF48179 204 297 2.89E-29 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 315 405 5.2E-22 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 7 184 1.7E-54 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 SMART SM00984 314 406 2.6E-28 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 7 402 3.2E-125 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Alide_0749 baebe03a40a1a1846635cc85b6565efc 406 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 291 2.6E-27 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_2563 39337364b37f556c4efe6fbc038811fc 112 Pfam PF04320 Protein with unknown function (DUF469) 11 109 4.4E-30 T 12-10-2018 IPR007416 Protein of unknown function DUF469 Alide_0627 3f2bdb2b92e9ce649510d1aded58d635 274 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 34 248 2.8E-43 T 12-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Alide_0627 3f2bdb2b92e9ce649510d1aded58d635 274 Gene3D G3DSA:1.10.800.10 6 273 2.2E-97 T 12-10-2018 IPR036951 Aromatic amino acid hydroxylase superfamily GO:0004497|GO:0005506|GO:0009072|GO:0055114 Alide_0627 3f2bdb2b92e9ce649510d1aded58d635 274 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 25 265 4.7E-96 T 12-10-2018 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|KEGG: 00790+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158 Alide_0627 3f2bdb2b92e9ce649510d1aded58d635 274 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 132 143 - T 12-10-2018 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 Alide_0627 3f2bdb2b92e9ce649510d1aded58d635 274 SUPERFAMILY SSF56534 15 265 6.41E-93 T 12-10-2018 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily Alide_0627 3f2bdb2b92e9ce649510d1aded58d635 274 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 226 245 8.8E-11 T 12-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Alide_0627 3f2bdb2b92e9ce649510d1aded58d635 274 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 194 212 8.8E-11 T 12-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Alide_0627 3f2bdb2b92e9ce649510d1aded58d635 274 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 89 111 8.8E-11 T 12-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 Alide_1960 f12d28a1a074cfd785d898d5273c3d06 121 PIRSF PIRSF000169 6 121 3.0E-32 T 12-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 Alide_1960 f12d28a1a074cfd785d898d5273c3d06 121 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 8 91 1.6E-9 T 12-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1960 f12d28a1a074cfd785d898d5273c3d06 121 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 14 119 7.7E-29 T 12-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 Alide_1960 f12d28a1a074cfd785d898d5273c3d06 121 SUPERFAMILY SSF81343 9 121 3.92E-25 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_1960 f12d28a1a074cfd785d898d5273c3d06 121 Gene3D G3DSA:1.20.1300.10 8 121 2.0E-25 T 12-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_0808 3b8fae1dce594f17efbf7514dc1f40d8 403 SUPERFAMILY SSF56935 30 403 1.47E-53 T 12-10-2018 Alide_0808 3b8fae1dce594f17efbf7514dc1f40d8 403 Pfam PF13609 Gram-negative porin 10 375 4.5E-35 T 12-10-2018 Alide_0808 3b8fae1dce594f17efbf7514dc1f40d8 403 Gene3D G3DSA:2.40.160.10 30 403 2.0E-59 T 12-10-2018 IPR023614 Porin domain superfamily Alide_2323 6c0520d4e3314e44f4e1cbce8d38403e 335 Gene3D G3DSA:3.90.180.10 15 326 7.0E-96 T 12-10-2018 Alide_2323 6c0520d4e3314e44f4e1cbce8d38403e 335 Pfam PF00107 Zinc-binding dehydrogenase 153 267 4.4E-34 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_2323 6c0520d4e3314e44f4e1cbce8d38403e 335 SMART SM00829 10 330 6.6E-38 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_2323 6c0520d4e3314e44f4e1cbce8d38403e 335 SUPERFAMILY SSF51735 113 269 7.4E-50 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2323 6c0520d4e3314e44f4e1cbce8d38403e 335 Gene3D G3DSA:3.40.50.720 123 267 7.0E-96 T 12-10-2018 Alide_2323 6c0520d4e3314e44f4e1cbce8d38403e 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 88 4.5E-8 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_2323 6c0520d4e3314e44f4e1cbce8d38403e 335 SUPERFAMILY SSF50129 1 138 8.07E-35 T 12-10-2018 IPR011032 GroES-like superfamily Alide_2955 bd20e87d005ae201d133d40901da25ed 166 Gene3D G3DSA:3.10.129.10 5 166 1.0E-38 T 12-10-2018 Alide_2955 bd20e87d005ae201d133d40901da25ed 166 SUPERFAMILY SSF54637 7 148 3.92E-36 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2955 bd20e87d005ae201d133d40901da25ed 166 Pfam PF01575 MaoC like domain 24 118 6.2E-21 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_0669 b22c79c80ff65285da04c64d92e6a84f 334 Pfam PF13489 Methyltransferase domain 20 175 3.6E-17 T 12-10-2018 Alide_0669 b22c79c80ff65285da04c64d92e6a84f 334 Gene3D G3DSA:3.40.50.150 23 223 3.1E-32 T 12-10-2018 Alide_0669 b22c79c80ff65285da04c64d92e6a84f 334 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 32 59 - T 12-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 Alide_0669 b22c79c80ff65285da04c64d92e6a84f 334 SUPERFAMILY SSF53335 16 199 8.28E-32 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0131 71702982f8c81d422c0f6d9624a1397e 462 SUPERFAMILY SSF143548 17 157 2.25E-46 T 12-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 Alide_0131 71702982f8c81d422c0f6d9624a1397e 462 Pfam PF03313 Serine dehydratase alpha chain 195 456 3.0E-101 T 12-10-2018 IPR005130 Serine dehydratase-like, alpha subunit Alide_0131 71702982f8c81d422c0f6d9624a1397e 462 Gene3D G3DSA:3.30.1330.90 11 160 1.5E-53 T 12-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 Alide_0131 71702982f8c81d422c0f6d9624a1397e 462 Pfam PF03315 Serine dehydratase beta chain 4 156 7.9E-58 T 12-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Alide_0131 71702982f8c81d422c0f6d9624a1397e 462 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 459 5.2E-209 T 12-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Alide_3868 2ba2cb46e7916be8ce99d502b29b39f8 128 SMART SM00448 5 119 4.1E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3868 2ba2cb46e7916be8ce99d502b29b39f8 128 Gene3D G3DSA:3.40.50.12740 4 127 4.7E-37 T 12-10-2018 Alide_3868 2ba2cb46e7916be8ce99d502b29b39f8 128 Pfam PF00072 Response regulator receiver domain 8 119 5.0E-32 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3868 2ba2cb46e7916be8ce99d502b29b39f8 128 SUPERFAMILY SSF52172 5 124 4.13E-35 T 12-10-2018 IPR011006 CheY-like superfamily Alide_4100 ad110eea911ab9adc0363869e6564187 642 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 23 642 33.48 T 12-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup Alide_4100 ad110eea911ab9adc0363869e6564187 642 Pfam PF02705 K+ potassium transporter 32 563 9.8E-204 T 12-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 Alide_0329 717cd2398e018619062c0e43c209968e 113 Gene3D G3DSA:3.10.20.30 3 96 6.2E-21 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_0329 717cd2398e018619062c0e43c209968e 113 SUPERFAMILY SSF54292 2 92 1.19E-20 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_0329 717cd2398e018619062c0e43c209968e 113 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 12-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Alide_0329 717cd2398e018619062c0e43c209968e 113 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 83 5.5E-14 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Alide_1729 f3050ce7e0ad68922d0c903f919d0f17 260 SUPERFAMILY SSF53335 85 231 1.25E-18 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_1729 f3050ce7e0ad68922d0c903f919d0f17 260 Pfam PF08241 Methyltransferase domain 84 133 4.0E-8 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Alide_1729 f3050ce7e0ad68922d0c903f919d0f17 260 Gene3D G3DSA:3.40.50.150 9 203 1.9E-17 T 12-10-2018 Alide_1175 5c667dde8639e4631acf3bd97e262d0d 340 Gene3D G3DSA:1.10.260.40 2 59 3.1E-22 T 12-10-2018 Alide_1175 5c667dde8639e4631acf3bd97e262d0d 340 Pfam PF13377 Periplasmic binding protein-like domain 171 332 1.2E-30 T 12-10-2018 Alide_1175 5c667dde8639e4631acf3bd97e262d0d 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 4.5E-16 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Alide_1175 5c667dde8639e4631acf3bd97e262d0d 340 Gene3D G3DSA:3.40.50.2300 163 290 5.6E-70 T 12-10-2018 Alide_1175 5c667dde8639e4631acf3bd97e262d0d 340 SMART SM00354 5 75 2.4E-28 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Alide_1175 5c667dde8639e4631acf3bd97e262d0d 340 Gene3D G3DSA:3.40.50.2300 60 307 5.6E-70 T 12-10-2018 Alide_1175 5c667dde8639e4631acf3bd97e262d0d 340 SUPERFAMILY SSF53822 62 314 1.59E-61 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_1175 5c667dde8639e4631acf3bd97e262d0d 340 SUPERFAMILY SSF47413 6 63 7.31E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_3297 cfecfcc647d37ca7f0e77133417e9772 189 Pfam PF13577 SnoaL-like domain 10 131 4.5E-19 T 12-10-2018 IPR037401 SnoaL-like domain Alide_3297 cfecfcc647d37ca7f0e77133417e9772 189 Gene3D G3DSA:3.10.450.50 12 147 7.1E-36 T 12-10-2018 Alide_3297 cfecfcc647d37ca7f0e77133417e9772 189 SUPERFAMILY SSF54427 9 139 7.69E-33 T 12-10-2018 IPR032710 NTF2-like domain superfamily Alide_0175 b5d5cbed6ddb385d40802e9773b9891f 399 PIRSF PIRSF005962 12 399 2.1E-126 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_0175 b5d5cbed6ddb385d40802e9773b9891f 399 Pfam PF01546 Peptidase family M20/M25/M40 83 395 3.5E-35 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_0175 b5d5cbed6ddb385d40802e9773b9891f 399 Pfam PF07687 Peptidase dimerisation domain 200 289 9.0E-8 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_0175 b5d5cbed6ddb385d40802e9773b9891f 399 SUPERFAMILY SSF55031 193 311 8.64E-31 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_0175 b5d5cbed6ddb385d40802e9773b9891f 399 SUPERFAMILY SSF53187 17 398 3.59E-86 T 12-10-2018 Alide_0175 b5d5cbed6ddb385d40802e9773b9891f 399 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 24 382 2.1E-107 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_0175 b5d5cbed6ddb385d40802e9773b9891f 399 Gene3D G3DSA:3.40.630.10 24 380 1.2E-134 T 12-10-2018 Alide_0175 b5d5cbed6ddb385d40802e9773b9891f 399 Gene3D G3DSA:3.30.70.360 193 307 1.2E-134 T 12-10-2018 Alide_4172 3e3da406a3173108f5d54b7784737f8f 295 Gene3D G3DSA:3.40.50.880 9 271 3.2E-64 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_4172 3e3da406a3173108f5d54b7784737f8f 295 Pfam PF07722 Peptidase C26 13 241 3.7E-51 T 12-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 Alide_4172 3e3da406a3173108f5d54b7784737f8f 295 SUPERFAMILY SSF52317 34 264 2.92E-35 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_0674 e8c9f42fb34f4ca87c517be13d0f2f46 218 SUPERFAMILY SSF48498 97 212 8.53E-24 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_0674 e8c9f42fb34f4ca87c517be13d0f2f46 218 Gene3D G3DSA:1.10.10.60 15 67 3.5E-19 T 12-10-2018 Alide_0674 e8c9f42fb34f4ca87c517be13d0f2f46 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 73 1.0E-7 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0674 e8c9f42fb34f4ca87c517be13d0f2f46 218 Gene3D G3DSA:1.10.357.10 68 213 1.2E-33 T 12-10-2018 Alide_0674 e8c9f42fb34f4ca87c517be13d0f2f46 218 SUPERFAMILY SSF46689 23 89 1.69E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0882 30dc4ea926adc3ae25741b00703044c7 457 Pfam PF16933 Putative exopolysaccharide Exporter (EPS-E) 1 454 1.6E-162 T 12-10-2018 IPR031617 Putative exopolysaccharide exporter Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 235 251 2.2E-59 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 414 429 2.2E-59 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 27 52 2.2E-59 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 361 379 2.2E-59 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 383 401 2.2E-59 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 438 455 2.2E-59 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 110 128 2.2E-59 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 264 283 2.2E-59 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 128 147 2.2E-59 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 SUPERFAMILY SSF56235 3 528 1.72E-146 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 Pfam PF01019 Gamma-glutamyltranspeptidase 20 532 2.4E-124 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 Gene3D G3DSA:1.10.246.130 251 361 7.8E-30 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 Gene3D G3DSA:3.60.20.40 362 536 4.7E-46 T 12-10-2018 Alide_4353 dfc0c9933d5adaec5674ede231a1c689 539 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 6 528 2.0E-112 T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 Alide_1181 32ba1bf903f47e228b859fc76de33794 393 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 219 3.8E-19 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_1181 32ba1bf903f47e228b859fc76de33794 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 121 3.9E-23 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_1181 32ba1bf903f47e228b859fc76de33794 393 Gene3D G3DSA:2.40.110.10 125 234 8.3E-35 T 12-10-2018 Alide_1181 32ba1bf903f47e228b859fc76de33794 393 Gene3D G3DSA:1.20.140.10 235 393 1.7E-33 T 12-10-2018 Alide_1181 32ba1bf903f47e228b859fc76de33794 393 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 391 1.2E-16 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_1181 32ba1bf903f47e228b859fc76de33794 393 SUPERFAMILY SSF47203 231 393 1.3E-16 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_1181 32ba1bf903f47e228b859fc76de33794 393 Gene3D G3DSA:1.10.540.10 2 120 2.8E-29 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_1181 32ba1bf903f47e228b859fc76de33794 393 SUPERFAMILY SSF56645 2 244 9.42E-75 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3239 14e3056a57052399491b49568a89829b 487 Gene3D G3DSA:3.90.1300.10 9 484 1.3E-125 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_3239 14e3056a57052399491b49568a89829b 487 Pfam PF01425 Amidase 34 466 4.6E-83 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_3239 14e3056a57052399491b49568a89829b 487 SUPERFAMILY SSF75304 13 483 6.02E-114 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_3138 0ff325d835d9d4d130586d145abf96d7 312 SUPERFAMILY SSF46785 11 121 1.61E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3138 0ff325d835d9d4d130586d145abf96d7 312 SUPERFAMILY SSF53850 99 309 2.35E-38 T 12-10-2018 Alide_3138 0ff325d835d9d4d130586d145abf96d7 312 Gene3D G3DSA:3.40.190.290 101 309 9.3E-35 T 12-10-2018 Alide_3138 0ff325d835d9d4d130586d145abf96d7 312 Pfam PF03466 LysR substrate binding domain 98 305 3.7E-34 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3138 0ff325d835d9d4d130586d145abf96d7 312 Gene3D G3DSA:1.10.10.10 12 99 1.6E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3138 0ff325d835d9d4d130586d145abf96d7 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 3.2E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 SMART SM00825 Beta-ketoacyl synthase 6 414 6.0E-19 T 12-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 Gene3D G3DSA:3.40.47.10 261 403 2.3E-51 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 412 1.7E-198 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 159 175 - T 12-10-2018 IPR018201 Beta-ketoacyl synthase, active site Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 PIRSF PIRSF000447 1 414 6.8E-186 T 12-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 259 371 3.0E-37 T 12-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 Gene3D G3DSA:3.40.47.10 1 259 1.4E-96 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 SUPERFAMILY SSF53901 4 256 4.9E-81 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 251 3.7E-62 T 12-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Alide_3182 6416e1f3f7dc3517974c632e0e00cf95 414 SUPERFAMILY SSF53901 218 413 8.06E-72 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0302 73ab2a508be4b8868d254bc00d6ec866 324 SUPERFAMILY SSF53448 52 195 2.06E-21 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0302 73ab2a508be4b8868d254bc00d6ec866 324 Pfam PF05704 Capsular polysaccharide synthesis protein 58 193 9.4E-17 T 12-10-2018 IPR008441 Capsular polysaccharide synthesis protein Alide_0302 73ab2a508be4b8868d254bc00d6ec866 324 Gene3D G3DSA:3.90.550.20 56 213 2.7E-9 T 12-10-2018 Alide_4195 ba4df3152ce19a9eac5416742c3ad356 232 Gene3D G3DSA:1.20.1050.10 104 219 1.1E-110 T 12-10-2018 Alide_4195 ba4df3152ce19a9eac5416742c3ad356 232 SUPERFAMILY SSF52833 8 104 4.35E-23 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_4195 ba4df3152ce19a9eac5416742c3ad356 232 Pfam PF00043 Glutathione S-transferase, C-terminal domain 153 220 2.4E-8 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal Alide_4195 ba4df3152ce19a9eac5416742c3ad356 232 Pfam PF02798 Glutathione S-transferase, N-terminal domain 19 97 4.9E-13 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_4195 ba4df3152ce19a9eac5416742c3ad356 232 SUPERFAMILY SSF47616 100 228 1.67E-33 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_4195 ba4df3152ce19a9eac5416742c3ad356 232 Gene3D G3DSA:3.40.30.10 6 229 1.1E-110 T 12-10-2018 Alide_1724 da2d5e6c31ba30b9b6f535a51ccff260 445 Gene3D G3DSA:3.30.160.390 11 117 2.8E-12 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Alide_1724 da2d5e6c31ba30b9b6f535a51ccff260 445 Pfam PF00589 Phage integrase family 248 404 1.5E-14 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1724 da2d5e6c31ba30b9b6f535a51ccff260 445 SUPERFAMILY SSF56349 170 404 1.94E-34 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_1724 da2d5e6c31ba30b9b6f535a51ccff260 445 Pfam PF13356 Arm DNA-binding domain 31 98 6.0E-12 T 12-10-2018 IPR025166 Integrase, DNA-binding domain Alide_1724 da2d5e6c31ba30b9b6f535a51ccff260 445 Gene3D G3DSA:1.10.443.10 242 416 4.6E-22 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_0523 d1c9fe61f7e04b818e3a0abb10507e17 302 PIRSF PIRSF015582 1 302 2.8E-82 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like Alide_0523 d1c9fe61f7e04b818e3a0abb10507e17 302 SUPERFAMILY SSF51621 6 248 1.63E-60 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_0523 d1c9fe61f7e04b818e3a0abb10507e17 302 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 10 237 7.5E-40 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Alide_0523 d1c9fe61f7e04b818e3a0abb10507e17 302 Gene3D G3DSA:3.20.20.60 1 302 1.6E-99 T 12-10-2018 Alide_4264 19a26f6bc337b3c1920795d691a4fe84 227 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 13 186 4.6E-68 T 12-10-2018 IPR022301 Integral membrane protein YjbE Alide_4264 19a26f6bc337b3c1920795d691a4fe84 227 Pfam PF03741 Integral membrane protein TerC family 15 184 3.6E-46 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 Alide_1078 7574981e733294a1d664f94be5f93ed3 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 1.2E-18 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Alide_1078 7574981e733294a1d664f94be5f93ed3 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 299 54.276 T 12-10-2018 IPR023009 Tyrosine recombinase XerC/XerD Alide_1078 7574981e733294a1d664f94be5f93ed3 299 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 11 298 3.9E-109 T 12-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 Alide_1078 7574981e733294a1d664f94be5f93ed3 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 299 58.142 T 12-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 Alide_1078 7574981e733294a1d664f94be5f93ed3 299 Gene3D G3DSA:1.10.150.130 5 101 7.8E-18 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_1078 7574981e733294a1d664f94be5f93ed3 299 SUPERFAMILY SSF56349 110 297 9.71E-55 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_1078 7574981e733294a1d664f94be5f93ed3 299 Pfam PF00589 Phage integrase family 113 284 1.2E-48 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1078 7574981e733294a1d664f94be5f93ed3 299 Gene3D G3DSA:1.10.443.10 112 293 2.8E-66 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_1078 7574981e733294a1d664f94be5f93ed3 299 SUPERFAMILY SSF47823 5 102 2.75E-29 T 12-10-2018 Alide_2292 73cc3f87c36dad65a7be991925f613c6 357 SUPERFAMILY SSF102114 39 345 3.27E-84 T 12-10-2018 Alide_2292 73cc3f87c36dad65a7be991925f613c6 357 SMART SM00876 254 346 5.7E-42 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Alide_2292 73cc3f87c36dad65a7be991925f613c6 357 Gene3D G3DSA:3.20.20.70 39 348 2.5E-116 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2292 73cc3f87c36dad65a7be991925f613c6 357 Hamap MF_01694 Biotin synthase [bioB]. 39 347 40.347 T 12-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Alide_2292 73cc3f87c36dad65a7be991925f613c6 357 PIRSF PIRSF001619 29 353 1.7E-120 T 12-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Alide_2292 73cc3f87c36dad65a7be991925f613c6 357 Pfam PF04055 Radical SAM superfamily 83 229 1.4E-14 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_2292 73cc3f87c36dad65a7be991925f613c6 357 TIGRFAM TIGR00433 bioB: biotin synthase 48 344 3.0E-115 T 12-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Alide_2292 73cc3f87c36dad65a7be991925f613c6 357 SMART SM00729 77 289 8.2E-33 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Alide_2292 73cc3f87c36dad65a7be991925f613c6 357 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 254 344 6.5E-17 T 12-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Alide_2002 8bc26ad0771df0c8e4dd163e952d6f48 181 Pfam PF01029 NusB family 40 162 3.5E-31 T 12-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Alide_2002 8bc26ad0771df0c8e4dd163e952d6f48 181 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 36 167 19.459 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 Alide_2002 8bc26ad0771df0c8e4dd163e952d6f48 181 SUPERFAMILY SSF48013 36 167 1.44E-37 T 12-10-2018 IPR035926 NusB-like superfamily Alide_2002 8bc26ad0771df0c8e4dd163e952d6f48 181 Gene3D G3DSA:1.10.940.10 32 171 5.3E-38 T 12-10-2018 IPR035926 NusB-like superfamily Alide_2002 8bc26ad0771df0c8e4dd163e952d6f48 181 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 38 165 8.6E-34 T 12-10-2018 IPR011605 NusB antitermination factor GO:0006353 Alide_0106 b465cbe959b102d20190af13898b8b3e 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 5.9E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0106 b465cbe959b102d20190af13898b8b3e 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 83 96 5.9E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0106 b465cbe959b102d20190af13898b8b3e 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 197 211 5.9E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0106 b465cbe959b102d20190af13898b8b3e 258 PRINTS PR00111 Alpha/beta hydrolase fold signature 40 55 5.9E-15 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0106 b465cbe959b102d20190af13898b8b3e 258 SUPERFAMILY SSF53474 10 252 2.94E-56 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0106 b465cbe959b102d20190af13898b8b3e 258 Gene3D G3DSA:3.40.50.1820 7 252 5.8E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0106 b465cbe959b102d20190af13898b8b3e 258 PRINTS PR00412 Epoxide hydrolase signature 83 96 8.4E-9 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_0106 b465cbe959b102d20190af13898b8b3e 258 PRINTS PR00412 Epoxide hydrolase signature 228 250 8.4E-9 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_0106 b465cbe959b102d20190af13898b8b3e 258 PRINTS PR00412 Epoxide hydrolase signature 40 55 8.4E-9 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_0106 b465cbe959b102d20190af13898b8b3e 258 Pfam PF12697 Alpha/beta hydrolase family 16 243 2.8E-20 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_1613 a3d3c3a475b15241a6694bf81aa88ffa 327 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 95 111 - T 12-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 Alide_1613 a3d3c3a475b15241a6694bf81aa88ffa 327 Pfam PF07859 alpha/beta hydrolase fold 95 300 1.2E-72 T 12-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 Alide_1613 a3d3c3a475b15241a6694bf81aa88ffa 327 Gene3D G3DSA:3.40.50.1820 4 325 7.6E-93 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1613 a3d3c3a475b15241a6694bf81aa88ffa 327 SUPERFAMILY SSF53474 35 322 6.49E-71 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1905 a1a95b3a54aa06512b560556267fa0c0 131 Gene3D G3DSA:3.10.129.10 1 129 3.7E-28 T 12-10-2018 Alide_1905 a1a95b3a54aa06512b560556267fa0c0 131 Pfam PF03061 Thioesterase superfamily 22 93 3.7E-7 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_1905 a1a95b3a54aa06512b560556267fa0c0 131 SUPERFAMILY SSF54637 4 126 1.75E-25 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_1534 a148085615eab31fe07b7f86a3452065 157 Pfam PF03061 Thioesterase superfamily 41 122 1.5E-13 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_1534 a148085615eab31fe07b7f86a3452065 157 SUPERFAMILY SSF54637 22 155 1.0E-35 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_1534 a148085615eab31fe07b7f86a3452065 157 Gene3D G3DSA:3.10.129.10 16 155 1.9E-43 T 12-10-2018 Alide_0149 e9fb8ead1941adaf79798b1075fab37a 386 Gene3D G3DSA:3.40.47.10 3 385 8.2E-114 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0149 e9fb8ead1941adaf79798b1075fab37a 386 SUPERFAMILY SSF53901 256 376 5.64E-24 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0149 e9fb8ead1941adaf79798b1075fab37a 386 PIRSF PIRSF000429 4 381 3.4E-30 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_0149 e9fb8ead1941adaf79798b1075fab37a 386 Pfam PF02803 Thiolase, C-terminal domain 256 360 1.4E-6 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_0149 e9fb8ead1941adaf79798b1075fab37a 386 SUPERFAMILY SSF53901 6 230 7.2E-25 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0601 00425deeeee2545d466f1d694ef360ee 251 Pfam PF02358 Trehalose-phosphatase 14 217 5.3E-36 T 12-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 Alide_0601 00425deeeee2545d466f1d694ef360ee 251 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 13 202 4.1E-16 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Alide_0601 00425deeeee2545d466f1d694ef360ee 251 SUPERFAMILY SSF56784 12 237 1.81E-39 T 12-10-2018 IPR036412 HAD-like superfamily Alide_0601 00425deeeee2545d466f1d694ef360ee 251 Gene3D G3DSA:3.40.50.1000 13 224 9.8E-49 T 12-10-2018 IPR023214 HAD superfamily Alide_0601 00425deeeee2545d466f1d694ef360ee 251 Gene3D G3DSA:3.30.70.1020 91 165 9.8E-49 T 12-10-2018 Alide_0601 00425deeeee2545d466f1d694ef360ee 251 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 10 236 7.0E-43 T 12-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 Alide_2327 08e460fc2e7a411da49fcc95968bc068 378 SUPERFAMILY SSF89796 8 370 1.57E-119 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2327 08e460fc2e7a411da49fcc95968bc068 378 Gene3D G3DSA:3.30.1540.10 231 322 3.4E-118 T 12-10-2018 Alide_2327 08e460fc2e7a411da49fcc95968bc068 378 Pfam PF02515 CoA-transferase family III 10 369 1.1E-114 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2327 08e460fc2e7a411da49fcc95968bc068 378 Gene3D G3DSA:3.40.50.10540 10 355 3.4E-118 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3274 666da557182f5342b4d7849703735b36 123 Gene3D G3DSA:3.40.1230.10 4 123 8.2E-35 T 12-10-2018 IPR036748 MTH938-like superfamily Alide_3274 666da557182f5342b4d7849703735b36 123 SUPERFAMILY SSF64076 8 121 4.71E-36 T 12-10-2018 IPR036748 MTH938-like superfamily Alide_3274 666da557182f5342b4d7849703735b36 123 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 13 120 2.8E-31 T 12-10-2018 IPR007523 NDUFAF3/Mth938 domain-containing protein Alide_0259 b88a40864715437893f526f07264fff8 257 Pfam PF00175 Oxidoreductase NAD-binding domain 112 227 1.8E-7 T 12-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Alide_0259 b88a40864715437893f526f07264fff8 257 Gene3D G3DSA:3.40.50.80 100 253 1.1E-42 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_0259 b88a40864715437893f526f07264fff8 257 SUPERFAMILY SSF63380 4 99 9.68E-25 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_0259 b88a40864715437893f526f07264fff8 257 SUPERFAMILY SSF52343 103 255 1.44E-37 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_0259 b88a40864715437893f526f07264fff8 257 Gene3D G3DSA:2.40.30.10 1 97 1.1E-27 T 12-10-2018 Alide_0259 b88a40864715437893f526f07264fff8 257 Pfam PF00970 Oxidoreductase FAD-binding domain 18 98 1.5E-7 T 12-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Alide_0259 b88a40864715437893f526f07264fff8 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 6.9E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_0259 b88a40864715437893f526f07264fff8 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 136 145 6.9E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_0259 b88a40864715437893f526f07264fff8 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 6.9E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_0259 b88a40864715437893f526f07264fff8 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 51 58 6.9E-6 T 12-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Alide_4380 33bb8d36e1f4f510970b53c85979bd54 371 Pfam PF01636 Phosphotransferase enzyme family 48 275 1.4E-31 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase Alide_4380 33bb8d36e1f4f510970b53c85979bd54 371 Gene3D G3DSA:3.30.200.20 24 117 1.1E-24 T 12-10-2018 Alide_4380 33bb8d36e1f4f510970b53c85979bd54 371 Gene3D G3DSA:3.90.1200.10 118 364 6.9E-70 T 12-10-2018 Alide_4380 33bb8d36e1f4f510970b53c85979bd54 371 SUPERFAMILY SSF56112 33 345 2.04E-52 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_1351 145ca7d606cb5c2b0dde624ad9bf492f 356 Gene3D G3DSA:3.40.50.1100 58 164 4.2E-68 T 12-10-2018 Alide_1351 145ca7d606cb5c2b0dde624ad9bf492f 356 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 36 322 3.1E-51 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_1351 145ca7d606cb5c2b0dde624ad9bf492f 356 SUPERFAMILY SSF53686 29 340 2.88E-70 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_1351 145ca7d606cb5c2b0dde624ad9bf492f 356 Gene3D G3DSA:3.40.50.1100 30 328 4.2E-68 T 12-10-2018 Alide_4233 9f609e067362697656375e2cbac5ea36 1205 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 483 584 4.1E-7 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Alide_4233 9f609e067362697656375e2cbac5ea36 1205 Gene3D G3DSA:3.40.50.970 18 234 3.8E-27 T 12-10-2018 Alide_4233 9f609e067362697656375e2cbac5ea36 1205 Gene3D G3DSA:3.40.920.10 766 968 3.1E-16 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Alide_4233 9f609e067362697656375e2cbac5ea36 1205 SUPERFAMILY SSF52518 29 205 2.5E-19 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_4233 9f609e067362697656375e2cbac5ea36 1205 SUPERFAMILY SSF53323 768 1019 6.02E-33 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Alide_4233 9f609e067362697656375e2cbac5ea36 1205 Gene3D G3DSA:3.40.50.970 468 620 3.1E-6 T 12-10-2018 Alide_4233 9f609e067362697656375e2cbac5ea36 1205 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 776 963 4.3E-20 T 12-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Alide_4233 9f609e067362697656375e2cbac5ea36 1205 SUPERFAMILY SSF52518 463 668 2.36E-15 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_0299 279540ce4aaf173c8c195bb4cc758e7e 450 Pfam PF04932 O-Antigen ligase 190 343 3.7E-19 T 12-10-2018 IPR007016 O-antigen ligase-related Alide_1757 7929099d18bdfcfcc485440b79267f2a 190 Pfam PF06271 RDD family 31 174 2.9E-17 T 12-10-2018 IPR010432 RDD Alide_1997 31b3521ee350b546af96694a83f7b511 320 SUPERFAMILY SSF74653 231 318 3.4E-14 T 12-10-2018 Alide_1997 31b3521ee350b546af96694a83f7b511 320 TIGRFAM TIGR02794 tolA_full: protein TolA 20 303 4.0E-29 T 12-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 Alide_1997 31b3521ee350b546af96694a83f7b511 320 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 259 316 4.4E-7 T 12-10-2018 IPR006260 TonB/TolA, C-terminal Alide_1997 31b3521ee350b546af96694a83f7b511 320 Pfam PF13103 TonB C terminal 234 316 3.6E-21 T 12-10-2018 Alide_1997 31b3521ee350b546af96694a83f7b511 320 SUPERFAMILY SSF101447 86 96 9.68E-6 T 12-10-2018 Alide_1997 31b3521ee350b546af96694a83f7b511 320 Gene3D G3DSA:3.30.1150.10 223 318 5.9E-10 T 12-10-2018 Alide_0901 99608d952f4c2bff37f8b39c6ebd1064 350 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 40 345 1.6E-99 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 Alide_0901 99608d952f4c2bff37f8b39c6ebd1064 350 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 10 349 2.1E-115 T 12-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 Alide_0901 99608d952f4c2bff37f8b39c6ebd1064 350 Gene3D G3DSA:3.40.718.10 1 349 1.1E-120 T 12-10-2018 Alide_0901 99608d952f4c2bff37f8b39c6ebd1064 350 SUPERFAMILY SSF53659 9 349 6.34E-99 T 12-10-2018 Alide_4268 23446511b805bc8f3937cbe04bc38f70 379 Pfam PF02481 DNA recombination-mediator protein A 83 294 1.3E-72 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Alide_4268 23446511b805bc8f3937cbe04bc38f70 379 Gene3D G3DSA:3.40.50.450 1 303 4.6E-104 T 12-10-2018 Alide_4268 23446511b805bc8f3937cbe04bc38f70 379 SUPERFAMILY SSF102405 86 303 1.01E-39 T 12-10-2018 Alide_4268 23446511b805bc8f3937cbe04bc38f70 379 Gene3D G3DSA:1.10.10.10 304 374 4.3E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4268 23446511b805bc8f3937cbe04bc38f70 379 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 82 303 4.1E-73 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Alide_3459 84c3c059443d02760ab283a464229082 323 PIRSF PIRSF017082 1 322 2.6E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3459 84c3c059443d02760ab283a464229082 323 Gene3D G3DSA:3.40.190.10 124 248 2.0E-105 T 12-10-2018 Alide_3459 84c3c059443d02760ab283a464229082 323 SUPERFAMILY SSF53850 109 287 6.71E-13 T 12-10-2018 Alide_3459 84c3c059443d02760ab283a464229082 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 44 318 2.5E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3459 84c3c059443d02760ab283a464229082 323 Gene3D G3DSA:3.40.190.150 25 313 2.0E-105 T 12-10-2018 Alide_2410 5cec93396b0d362e3b25652fd97d03be 333 SUPERFAMILY SSF52518 16 328 2.28E-89 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2410 5cec93396b0d362e3b25652fd97d03be 333 Gene3D G3DSA:3.40.50.970 1 333 9.4E-112 T 12-10-2018 Alide_2410 5cec93396b0d362e3b25652fd97d03be 333 Pfam PF00676 Dehydrogenase E1 component 26 312 1.3E-73 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Alide_3492 a6fbad0a4f2af46408480f6c3f6397aa 307 Pfam PF03466 LysR substrate binding domain 84 293 5.8E-35 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_3492 a6fbad0a4f2af46408480f6c3f6397aa 307 SUPERFAMILY SSF53850 83 296 2.53E-36 T 12-10-2018 Alide_3492 a6fbad0a4f2af46408480f6c3f6397aa 307 Gene3D G3DSA:3.40.190.10 88 290 3.5E-47 T 12-10-2018 Alide_3492 a6fbad0a4f2af46408480f6c3f6397aa 307 Gene3D G3DSA:1.10.10.10 1 85 5.6E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3492 a6fbad0a4f2af46408480f6c3f6397aa 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 58 9.9E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3492 a6fbad0a4f2af46408480f6c3f6397aa 307 SUPERFAMILY SSF46785 3 84 8.35E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3492 a6fbad0a4f2af46408480f6c3f6397aa 307 Gene3D G3DSA:3.40.190.10 159 264 3.5E-47 T 12-10-2018 Alide_1383 ea97bf940fc7af767eb84c858d181a0e 99 SMART SM00899 14 92 1.1E-15 T 12-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Alide_1383 ea97bf940fc7af767eb84c858d181a0e 99 Gene3D G3DSA:2.30.30.90 13 96 1.2E-20 T 12-10-2018 IPR038157 Ferrous iron transporter, core domain Alide_1383 ea97bf940fc7af767eb84c858d181a0e 99 SUPERFAMILY SSF50037 16 91 5.26E-12 T 12-10-2018 IPR008988 Transcriptional repressor, C-terminal Alide_1383 ea97bf940fc7af767eb84c858d181a0e 99 Pfam PF04023 FeoA domain 16 91 1.2E-16 T 12-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Alide_3171 2266bbeecc466539f19016e77f8daf0a 257 Gene3D G3DSA:2.40.50.140 7 85 4.5E-25 T 12-10-2018 Alide_3171 2266bbeecc466539f19016e77f8daf0a 257 SUPERFAMILY SSF50249 6 83 3.08E-11 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_3171 2266bbeecc466539f19016e77f8daf0a 257 Gene3D G3DSA:1.20.1440.120 90 257 8.8E-29 T 12-10-2018 Alide_3171 2266bbeecc466539f19016e77f8daf0a 257 SUPERFAMILY SSF57863 95 161 6.8E-7 T 12-10-2018 IPR037278 ARFGAP/RecO-like zinc finger Alide_3171 2266bbeecc466539f19016e77f8daf0a 257 TIGRFAM TIGR00613 reco: DNA repair protein RecO 13 164 4.8E-18 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Alide_3171 2266bbeecc466539f19016e77f8daf0a 257 Hamap MF_00201 DNA repair protein RecO [recO]. 5 254 21.507 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Alide_3171 2266bbeecc466539f19016e77f8daf0a 257 Pfam PF11967 Recombination protein O N terminal 7 85 3.5E-18 T 12-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal Alide_3171 2266bbeecc466539f19016e77f8daf0a 257 Pfam PF02565 Recombination protein O C terminal 91 244 1.5E-13 T 12-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 SUPERFAMILY SSF52210 147 306 3.92E-33 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 Gene3D G3DSA:3.40.50.261 310 472 1.1E-24 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 Pfam PF13380 CoA binding domain 22 149 1.9E-23 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 Gene3D G3DSA:3.40.50.261 145 308 5.9E-42 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 Gene3D G3DSA:3.40.50.720 15 144 5.9E-39 T 12-10-2018 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 172 306 4.0E-42 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 Gene3D G3DSA:3.30.470.20 502 712 2.7E-79 T 12-10-2018 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 SUPERFAMILY SSF51735 15 154 4.78E-33 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 Pfam PF13549 ATP-grasp domain 497 712 4.0E-68 T 12-10-2018 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 SUPERFAMILY SSF52210 313 470 6.41E-23 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 SUPERFAMILY SSF56059 502 712 1.2E-39 T 12-10-2018 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 SMART SM00881 18 114 3.6E-24 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_3286 2911acf582768ecfbb794efa64b6e3b7 717 Gene3D G3DSA:3.30.1490.20 520 597 2.7E-79 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_4050 d44f6fb683cae0a0fd657e737de598b0 109 SMART SM00830 18 97 4.7E-19 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Alide_4050 d44f6fb683cae0a0fd657e737de598b0 109 Pfam PF01817 Chorismate mutase type II 18 95 1.0E-12 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Alide_4050 d44f6fb683cae0a0fd657e737de598b0 109 SUPERFAMILY SSF48600 8 96 2.9E-21 T 12-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Alide_4050 d44f6fb683cae0a0fd657e737de598b0 109 Gene3D G3DSA:1.20.59.10 5 104 2.0E-26 T 12-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Alide_4130 8ec934018e27fb553b8ef453c95b4eae 332 Pfam PF01300 Telomere recombination 17 197 3.0E-50 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 Alide_4130 8ec934018e27fb553b8ef453c95b4eae 332 Gene3D G3DSA:3.90.870.10 4 211 7.0E-72 T 12-10-2018 Alide_4130 8ec934018e27fb553b8ef453c95b4eae 332 Gene3D G3DSA:3.40.50.11030 213 332 1.8E-12 T 12-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily Alide_4130 8ec934018e27fb553b8ef453c95b4eae 332 Pfam PF03481 Putative GTP-binding controlling metal-binding 217 330 2.4E-18 T 12-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain Alide_4130 8ec934018e27fb553b8ef453c95b4eae 332 SUPERFAMILY SSF55821 8 205 1.34E-57 T 12-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Alide_4130 8ec934018e27fb553b8ef453c95b4eae 332 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 10 205 6.8E-48 T 12-10-2018 IPR006070 YrdC-like domain GO:0003725 Alide_4130 8ec934018e27fb553b8ef453c95b4eae 332 PIRSF PIRSF004930 4 332 9.7E-97 T 12-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 Alide_1611 a5130b01238be931fbd6992549c7c7e3 277 Pfam PF08668 HDOD domain 16 208 2.9E-40 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD Alide_1611 a5130b01238be931fbd6992549c7c7e3 277 SUPERFAMILY SSF109604 2 261 1.98E-56 T 12-10-2018 Alide_1611 a5130b01238be931fbd6992549c7c7e3 277 Gene3D G3DSA:1.10.3210.10 1 269 2.1E-53 T 12-10-2018 Alide_2681 83187f5cc86e708e51ee7e84f710e9c6 607 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 103 515 2.5E-75 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain Alide_2681 83187f5cc86e708e51ee7e84f710e9c6 607 Gene3D G3DSA:3.10.105.10 320 578 2.7E-204 T 12-10-2018 Alide_2681 83187f5cc86e708e51ee7e84f710e9c6 607 PIRSF PIRSF002741 3 604 3.4E-91 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Alide_2681 83187f5cc86e708e51ee7e84f710e9c6 607 Gene3D G3DSA:3.40.190.10 27 603 2.7E-204 T 12-10-2018 Alide_2681 83187f5cc86e708e51ee7e84f710e9c6 607 SUPERFAMILY SSF53850 50 598 7.96E-112 T 12-10-2018 Alide_2648 db4264141ce1a47fe5b45f1dae9f3763 267 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 19 264 3.9E-87 T 12-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 Alide_2648 db4264141ce1a47fe5b45f1dae9f3763 267 Gene3D G3DSA:3.40.50.1820 6 265 3.8E-64 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2648 db4264141ce1a47fe5b45f1dae9f3763 267 Pfam PF00561 alpha/beta hydrolase fold 26 136 2.7E-13 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2648 db4264141ce1a47fe5b45f1dae9f3763 267 SUPERFAMILY SSF53474 11 265 5.31E-61 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2648 db4264141ce1a47fe5b45f1dae9f3763 267 Pfam PF08386 TAP-like protein 207 264 7.6E-5 T 12-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal Alide_3309 8c28ce92981fa043b61b632ffd9ce543 258 SUPERFAMILY SSF52540 4 231 3.27E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3309 8c28ce92981fa043b61b632ffd9ce543 258 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3309 8c28ce92981fa043b61b632ffd9ce543 258 Pfam PF00005 ABC transporter 21 171 2.7E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3309 8c28ce92981fa043b61b632ffd9ce543 258 Gene3D G3DSA:3.40.50.300 6 252 8.9E-58 T 12-10-2018 Alide_3309 8c28ce92981fa043b61b632ffd9ce543 258 SMART SM00382 30 249 3.1E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2927 c7ed65de3740f362e996d7d2f0ef23dd 282 Gene3D G3DSA:3.10.129.10 75 279 1.4E-27 T 12-10-2018 Alide_2927 c7ed65de3740f362e996d7d2f0ef23dd 282 SUPERFAMILY SSF54637 169 278 3.05E-14 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2927 c7ed65de3740f362e996d7d2f0ef23dd 282 Pfam PF13452 N-terminal half of MaoC dehydratase 76 142 2.5E-9 T 12-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Alide_2927 c7ed65de3740f362e996d7d2f0ef23dd 282 SUPERFAMILY SSF54637 88 144 1.63E-5 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_1224 e4704ac607c6bdc9e117cd563990ca35 268 SUPERFAMILY SSF161098 63 244 1.19E-19 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1224 e4704ac607c6bdc9e117cd563990ca35 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 242 6.1E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1224 e4704ac607c6bdc9e117cd563990ca35 268 Gene3D G3DSA:1.10.3720.10 62 250 4.5E-16 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2339 6ae02350e8dc0a30ddc4594535c810cf 81 Pfam PF00364 Biotin-requiring enzyme 19 79 3.3E-14 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_2339 6ae02350e8dc0a30ddc4594535c810cf 81 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 31 60 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Alide_2339 6ae02350e8dc0a30ddc4594535c810cf 81 SUPERFAMILY SSF51230 15 80 2.22E-14 T 12-10-2018 IPR011053 Single hybrid motif Alide_2339 6ae02350e8dc0a30ddc4594535c810cf 81 Gene3D G3DSA:2.40.50.100 11 81 1.2E-15 T 12-10-2018 Alide_1088 5526a8a7bb84f210fc51b1dd53aae73e 237 Gene3D G3DSA:1.10.3720.10 9 229 2.4E-46 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1088 5526a8a7bb84f210fc51b1dd53aae73e 237 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 120 3.3E-17 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_1088 5526a8a7bb84f210fc51b1dd53aae73e 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 228 6.3E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1088 5526a8a7bb84f210fc51b1dd53aae73e 237 SUPERFAMILY SSF161098 15 220 2.22E-37 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1780 7bd7262408eac5c49822493b84994a5a 506 SUPERFAMILY SSF48179 415 494 1.02E-15 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_1780 7bd7262408eac5c49822493b84994a5a 506 Gene3D G3DSA:3.30.750.190 291 412 9.5E-90 T 12-10-2018 Alide_1780 7bd7262408eac5c49822493b84994a5a 506 Gene3D G3DSA:3.40.50.720 1 190 3.5E-59 T 12-10-2018 Alide_1780 7bd7262408eac5c49822493b84994a5a 506 SUPERFAMILY SSF51735 6 187 2.45E-48 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1780 7bd7262408eac5c49822493b84994a5a 506 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8 186 2.4E-54 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_1780 7bd7262408eac5c49822493b84994a5a 506 SUPERFAMILY SSF48179 187 294 1.36E-27 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_1780 7bd7262408eac5c49822493b84994a5a 506 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 188 285 6.7E-26 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_1780 7bd7262408eac5c49822493b84994a5a 506 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 415 493 1.4E-14 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_1780 7bd7262408eac5c49822493b84994a5a 506 Gene3D G3DSA:1.10.1040.50 191 494 9.5E-90 T 12-10-2018 Alide_2672 93df807b2939c4a58f68c61c31516103 327 SUPERFAMILY SSF53850 118 282 1.35E-15 T 12-10-2018 Alide_2672 93df807b2939c4a58f68c61c31516103 327 Gene3D G3DSA:3.40.190.150 33 317 1.8E-107 T 12-10-2018 Alide_2672 93df807b2939c4a58f68c61c31516103 327 PIRSF PIRSF017082 1 326 3.2E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2672 93df807b2939c4a58f68c61c31516103 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 323 5.9E-86 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2672 93df807b2939c4a58f68c61c31516103 327 Gene3D G3DSA:3.40.190.10 131 252 1.8E-107 T 12-10-2018 Alide_3421 746ed651a8544c24700a9124ab58fdf3 120 Gene3D G3DSA:3.30.429.10 1 120 1.1E-31 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily Alide_3421 746ed651a8544c24700a9124ab58fdf3 120 SUPERFAMILY SSF55331 2 118 9.94E-25 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily Alide_3421 746ed651a8544c24700a9124ab58fdf3 120 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 89 1.9E-9 T 12-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 Alide_2532 f36861097ad5df163895d7c9457a792e 275 Gene3D G3DSA:3.30.1600.10 36 171 3.0E-73 T 12-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily Alide_2532 f36861097ad5df163895d7c9457a792e 275 SUPERFAMILY SSF52467 5 249 4.36E-77 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_2532 f36861097ad5df163895d7c9457a792e 275 Pfam PF02146 Sir2 family 27 201 4.2E-44 T 12-10-2018 IPR003000 Sirtuin family GO:0070403 Alide_2532 f36861097ad5df163895d7c9457a792e 275 Gene3D G3DSA:3.40.50.1220 18 244 3.0E-73 T 12-10-2018 Alide_2532 f36861097ad5df163895d7c9457a792e 275 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 20 247 54.355 T 12-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 SUPERFAMILY SSF52540 1020 1514 1.24E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:3.40.50.300 1598 1937 1.1E-132 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:3.30.190.20 1137 1256 1.7E-27 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:3.40.50.300 1005 1122 8.1E-22 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 ProSitePatterns PS00211 ABC transporters family signature. 1823 1837 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 ProSitePatterns PS00211 ABC transporters family signature. 1432 1446 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 963 1.5E-275 T 12-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:3.40.50.300 1281 1543 5.4E-62 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 SUPERFAMILY SSF52540 643 952 8.04E-35 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:1.10.8.280 282 388 1.4E-200 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:3.30.190.20 132 233 1.4E-200 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 SMART SM00382 1613 1908 3.4 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 SMART SM00382 1034 1509 3.7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 SMART SM00382 657 945 0.69 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:1.20.1580.10 1685 1823 1.1E-132 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:1.20.1580.10 716 858 8.0E-128 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 SUPERFAMILY SSF52540 1602 1916 2.67E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:3.40.50.300 641 975 8.0E-128 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:3.40.50.300 8 620 1.4E-200 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 SUPERFAMILY SSF52540 6 595 4.87E-37 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 Gene3D G3DSA:1.20.1580.10 92 518 1.4E-200 T 12-10-2018 Alide_3783 4bf677da0ca6e2a6332a71be3aa7b35a 1944 ProSitePatterns PS00211 ABC transporters family signature. 858 872 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1449 cbf8a4eeb6dbad2d7cd32e8b538dc02f 443 Gene3D G3DSA:3.40.190.10 124 271 8.1E-31 T 12-10-2018 Alide_1449 cbf8a4eeb6dbad2d7cd32e8b538dc02f 443 Pfam PF16868 NMT1-like family 52 255 2.0E-16 T 12-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Alide_1449 cbf8a4eeb6dbad2d7cd32e8b538dc02f 443 SUPERFAMILY SSF53850 44 294 1.37E-42 T 12-10-2018 Alide_1449 cbf8a4eeb6dbad2d7cd32e8b538dc02f 443 Gene3D G3DSA:3.40.190.10 50 288 8.1E-31 T 12-10-2018 Alide_2132 05b961d9a9b41be109b647f479f176a5 478 Gene3D G3DSA:1.20.1280.70 357 416 5.9E-24 T 12-10-2018 Alide_2132 05b961d9a9b41be109b647f479f176a5 478 Gene3D G3DSA:2.30.30.450 213 351 1.3E-45 T 12-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily Alide_2132 05b961d9a9b41be109b647f479f176a5 478 SUPERFAMILY SSF53098 1 473 1.01E-117 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_2132 05b961d9a9b41be109b647f479f176a5 478 Pfam PF08411 Exonuclease C-terminal 204 472 1.1E-95 T 12-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 Alide_2132 05b961d9a9b41be109b647f479f176a5 478 Pfam PF00929 Exonuclease 5 185 3.9E-26 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_2132 05b961d9a9b41be109b647f479f176a5 478 PIRSF PIRSF000977 1 477 2.6E-204 T 12-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 Alide_2132 05b961d9a9b41be109b647f479f176a5 478 Gene3D G3DSA:3.30.420.10 1 193 1.1E-68 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_2132 05b961d9a9b41be109b647f479f176a5 478 SMART SM00479 3 195 0.0036 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_0167 0176b0ac003fde5ba9f41bd97e88cee9 427 SUPERFAMILY SSF100950 9 215 1.61E-33 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_0167 0176b0ac003fde5ba9f41bd97e88cee9 427 Gene3D G3DSA:3.30.750.70 178 281 1.4E-31 T 12-10-2018 Alide_0167 0176b0ac003fde5ba9f41bd97e88cee9 427 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 12 156 5.1E-10 T 12-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 Alide_0167 0176b0ac003fde5ba9f41bd97e88cee9 427 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 264 413 3.4E-43 T 12-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Alide_0167 0176b0ac003fde5ba9f41bd97e88cee9 427 Gene3D G3DSA:3.40.1080.20 283 424 2.1E-45 T 12-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily Alide_0167 0176b0ac003fde5ba9f41bd97e88cee9 427 Gene3D G3DSA:3.40.1080.10 2 175 1.2E-38 T 12-10-2018 Alide_0167 0176b0ac003fde5ba9f41bd97e88cee9 427 SUPERFAMILY SSF100950 181 417 2.3E-54 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_3972 99c5145c90d010f6e0949afc6a6c6d2b 106 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 103 2.4E-33 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3972 99c5145c90d010f6e0949afc6a6c6d2b 106 Gene3D G3DSA:2.30.30.30 1 104 1.5E-33 T 12-10-2018 IPR014722 Ribosomal protein L2, domain 2 Alide_3972 99c5145c90d010f6e0949afc6a6c6d2b 106 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 12-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_3972 99c5145c90d010f6e0949afc6a6c6d2b 106 SMART SM00739 3 30 5.6E-4 T 12-10-2018 IPR005824 KOW Alide_3972 99c5145c90d010f6e0949afc6a6c6d2b 106 SUPERFAMILY SSF50104 3 100 1.1E-29 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily Alide_3972 99c5145c90d010f6e0949afc6a6c6d2b 106 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 103 7.2E-24 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3972 99c5145c90d010f6e0949afc6a6c6d2b 106 Pfam PF00467 KOW motif 6 25 1.7E-5 T 12-10-2018 IPR005824 KOW Alide_3972 99c5145c90d010f6e0949afc6a6c6d2b 106 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 97 18.251 T 12-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3813 990f074f41009fa2dc64fb08fc7787d5 220 Gene3D G3DSA:3.40.50.1000 5 208 2.5E-52 T 12-10-2018 IPR023214 HAD superfamily Alide_3813 990f074f41009fa2dc64fb08fc7787d5 220 SUPERFAMILY SSF56784 3 219 6.35E-50 T 12-10-2018 IPR036412 HAD-like superfamily Alide_3813 990f074f41009fa2dc64fb08fc7787d5 220 Gene3D G3DSA:1.10.150.240 18 84 2.5E-52 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Alide_3813 990f074f41009fa2dc64fb08fc7787d5 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 186 8.6E-19 T 12-10-2018 Alide_3813 990f074f41009fa2dc64fb08fc7787d5 220 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 62 187 2.7E-13 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_4595 0d3065af7c9d56403c754ff2739ea9dc 198 SUPERFAMILY SSF56024 52 194 5.61E-30 T 12-10-2018 Alide_4595 0d3065af7c9d56403c754ff2739ea9dc 198 Pfam PF13091 PLD-like domain 63 188 2.4E-23 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_4595 0d3065af7c9d56403c754ff2739ea9dc 198 Gene3D G3DSA:3.30.870.10 44 198 1.2E-35 T 12-10-2018 Alide_2654 ccc34d9f90ace436a7fb315fd67923ec 605 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 156 166 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_2654 ccc34d9f90ace436a7fb315fd67923ec 605 Pfam PF00920 Dehydratase family 68 601 3.9E-160 T 12-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_2654 ccc34d9f90ace436a7fb315fd67923ec 605 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 5 603 2.9E-277 T 12-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 Alide_2654 ccc34d9f90ace436a7fb315fd67923ec 605 Gene3D G3DSA:3.50.30.80 419 569 1.1E-51 T 12-10-2018 Alide_2654 ccc34d9f90ace436a7fb315fd67923ec 605 SUPERFAMILY SSF52016 419 604 5.89E-59 T 12-10-2018 Alide_2654 ccc34d9f90ace436a7fb315fd67923ec 605 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 505 516 - T 12-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_2654 ccc34d9f90ace436a7fb315fd67923ec 605 SUPERFAMILY SSF143975 4 418 5.75E-136 T 12-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Alide_2654 ccc34d9f90ace436a7fb315fd67923ec 605 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 3 605 55.76 T 12-10-2018 Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 Gene3D G3DSA:3.30.300.20 17 107 5.5E-29 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 Gene3D G3DSA:3.30.1140.32 108 208 3.9E-44 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 SUPERFAMILY SSF54821 108 206 1.96E-39 T 12-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 12-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 1.1E-40 T 12-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 SUPERFAMILY SSF54814 2 106 1.36E-36 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.979 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 SMART SM00322 60 125 6.3E-8 T 12-10-2018 IPR004087 K Homology domain GO:0003676 Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 7.1E-93 T 12-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Alide_0417 8f3cc22c1025878b76071af8b3b448cf 290 Pfam PF07650 KH domain 38 110 1.1E-19 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3500 0ed81a35e62f277fe29420e39dff1242 210 SUPERFAMILY SSF52016 1 191 3.92E-48 T 12-10-2018 Alide_3500 0ed81a35e62f277fe29420e39dff1242 210 Gene3D G3DSA:3.20.19.10 1 173 3.8E-62 T 12-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Alide_3500 0ed81a35e62f277fe29420e39dff1242 210 Pfam PF00694 Aconitase C-terminal domain 1 123 7.9E-29 T 12-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Alide_3500 0ed81a35e62f277fe29420e39dff1242 210 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 185 6.2E-52 T 12-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 Alide_3303 0673302cb12c6d0631c0f819498b9311 395 Gene3D G3DSA:3.30.1540.10 228 321 6.5E-127 T 12-10-2018 Alide_3303 0673302cb12c6d0631c0f819498b9311 395 Pfam PF02515 CoA-transferase family III 6 371 4.2E-118 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_3303 0673302cb12c6d0631c0f819498b9311 395 SUPERFAMILY SSF89796 1 395 3.01E-124 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3303 0673302cb12c6d0631c0f819498b9311 395 Gene3D G3DSA:3.40.50.10540 4 389 6.5E-127 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0907 bf6bae2f7edb3a96cd368425abd2a2fa 174 SUPERFAMILY SSF101738 8 115 4.84E-45 T 12-10-2018 IPR036760 SspB-like superfamily Alide_0907 bf6bae2f7edb3a96cd368425abd2a2fa 174 Gene3D G3DSA:2.30.30.220 4 125 5.8E-47 T 12-10-2018 IPR036760 SspB-like superfamily Alide_0907 bf6bae2f7edb3a96cd368425abd2a2fa 174 Pfam PF04386 Stringent starvation protein B 9 174 4.3E-36 T 12-10-2018 IPR007481 Stringent starvation protein B Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 321 442 1.0E-20 T 12-10-2018 IPR000014 PAS domain Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 580 691 1.9E-17 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 SMART SM00091 320 386 2.0E-6 T 12-10-2018 IPR000014 PAS domain Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 Gene3D G3DSA:3.30.565.10 535 696 3.8E-38 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 Gene3D G3DSA:1.10.287.130 464 533 1.6E-19 T 12-10-2018 Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 653 671 2.4E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 677 690 2.4E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 624 638 2.4E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 642 652 2.4E-16 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 SUPERFAMILY SSF47384 452 533 9.61E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 SMART SM00387 578 693 9.9E-25 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 SMART SM00388 459 536 2.9E-5 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 SUPERFAMILY SSF55874 539 690 2.23E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 Pfam PF00989 PAS fold 322 434 3.9E-14 T 12-10-2018 IPR013767 PAS fold GO:0006355 Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 SUPERFAMILY SSF55785 331 437 4.83E-21 T 12-10-2018 IPR035965 PAS domain superfamily Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 SMART SM00086 395 437 6.7E-4 T 12-10-2018 IPR001610 PAC motif Alide_4240 0a22ed5a004a391dfb6c546ef4898355 697 Gene3D G3DSA:3.30.450.20 322 455 7.1E-24 T 12-10-2018 Alide_4064 55a73d625a43797497abd730153bf33f 490 Gene3D G3DSA:1.20.1600.10 65 473 5.9E-136 T 12-10-2018 Alide_4064 55a73d625a43797497abd730153bf33f 490 Gene3D G3DSA:2.20.200.10 111 362 5.9E-136 T 12-10-2018 Alide_4064 55a73d625a43797497abd730153bf33f 490 SUPERFAMILY SSF56954 12 473 9.94E-108 T 12-10-2018 Alide_4064 55a73d625a43797497abd730153bf33f 490 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 23 473 8.9E-123 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Alide_4064 55a73d625a43797497abd730153bf33f 490 Pfam PF02321 Outer membrane efflux protein 74 264 8.0E-20 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_4064 55a73d625a43797497abd730153bf33f 490 Pfam PF02321 Outer membrane efflux protein 292 471 1.3E-32 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_1721 6ae6d5dd07f658812424896f078f5c7a 307 Pfam PF13362 Toprim domain 217 304 1.1E-17 T 12-10-2018 IPR006171 TOPRIM domain Alide_4109 7d906caa7b97a5a91a2361a29edd2973 359 Gene3D G3DSA:1.20.272.10 221 350 4.8E-23 T 12-10-2018 Alide_4109 7d906caa7b97a5a91a2361a29edd2973 359 Gene3D G3DSA:1.10.8.60 145 219 6.9E-26 T 12-10-2018 Alide_4109 7d906caa7b97a5a91a2361a29edd2973 359 Gene3D G3DSA:3.40.50.300 1 142 9.8E-48 T 12-10-2018 Alide_4109 7d906caa7b97a5a91a2361a29edd2973 359 SUPERFAMILY SSF52540 2 217 3.19E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4109 7d906caa7b97a5a91a2361a29edd2973 359 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 344 6.4E-72 T 12-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 Alide_4109 7d906caa7b97a5a91a2361a29edd2973 359 Pfam PF06144 DNA polymerase III, delta subunit 20 197 6.5E-20 T 12-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 Alide_4109 7d906caa7b97a5a91a2361a29edd2973 359 SUPERFAMILY SSF48019 219 347 4.76E-24 T 12-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 149 169 - T 12-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 Pfam PF00919 Uncharacterized protein family UPF0004 4 102 1.4E-30 T 12-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 SUPERFAMILY SSF102114 122 370 2.09E-58 T 12-10-2018 Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 Pfam PF04055 Radical SAM superfamily 149 324 1.1E-28 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 436 1.8E-151 T 12-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 Gene3D G3DSA:3.40.50.12160 3 136 2.3E-34 T 12-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 439 74.408 T 12-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 Pfam PF01938 TRAM domain 378 438 2.0E-16 T 12-10-2018 IPR002792 TRAM domain Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 438 4.8E-177 T 12-10-2018 Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 SMART SM00729 145 366 4.2E-57 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Alide_3654 8129ad1a100a0af6d45816e57c74f57f 449 Gene3D G3DSA:3.80.30.20 143 379 8.8E-84 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Alide_0227 a3ce742487e2065be7cc719f44b9b1f5 228 Gene3D G3DSA:1.10.10.10 126 228 6.4E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0227 a3ce742487e2065be7cc719f44b9b1f5 228 SUPERFAMILY SSF52172 1 123 3.56E-39 T 12-10-2018 IPR011006 CheY-like superfamily Alide_0227 a3ce742487e2065be7cc719f44b9b1f5 228 SUPERFAMILY SSF46894 129 224 6.8E-29 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_0227 a3ce742487e2065be7cc719f44b9b1f5 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 223 7.4E-25 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_0227 a3ce742487e2065be7cc719f44b9b1f5 228 Pfam PF00072 Response regulator receiver domain 4 112 1.4E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0227 a3ce742487e2065be7cc719f44b9b1f5 228 Gene3D G3DSA:3.40.50.2300 1 120 1.3E-38 T 12-10-2018 Alide_0227 a3ce742487e2065be7cc719f44b9b1f5 228 SMART SM00862 148 223 4.3E-25 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_0227 a3ce742487e2065be7cc719f44b9b1f5 228 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 223 8.4E-94 T 12-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Alide_0227 a3ce742487e2065be7cc719f44b9b1f5 228 SMART SM00448 1 111 1.6E-41 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2298 0d2f69ce1927cfaa226fad03614526c4 97 SMART SM00450 1 90 1.0E-10 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_2298 0d2f69ce1927cfaa226fad03614526c4 97 Pfam PF00581 Rhodanese-like domain 8 76 4.2E-10 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_2298 0d2f69ce1927cfaa226fad03614526c4 97 Gene3D G3DSA:3.40.250.10 1 78 6.8E-24 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_2298 0d2f69ce1927cfaa226fad03614526c4 97 SUPERFAMILY SSF52821 7 77 6.68E-24 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_3882 26ce3101831990d0c0de6dc9dc8ebda2 246 Pfam PF00460 Flagella basal body rod protein 5 35 2.0E-9 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Alide_3882 26ce3101831990d0c0de6dc9dc8ebda2 246 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 132 223 1.3E-20 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Alide_3882 26ce3101831990d0c0de6dc9dc8ebda2 246 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 1.5E-35 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Alide_3882 26ce3101831990d0c0de6dc9dc8ebda2 246 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 222 6.9E-55 T 12-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 Alide_3882 26ce3101831990d0c0de6dc9dc8ebda2 246 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 12-10-2018 IPR019776 Flagellar basal body rod protein, conserved site Alide_3882 26ce3101831990d0c0de6dc9dc8ebda2 246 SUPERFAMILY SSF117143 77 203 1.44E-22 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Alide_3882 26ce3101831990d0c0de6dc9dc8ebda2 246 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 171 241 8.3E-21 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Alide_0187 fa19f7e95fd08cfcba8d864142b41dc0 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 4.8E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0187 fa19f7e95fd08cfcba8d864142b41dc0 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 4.8E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0187 fa19f7e95fd08cfcba8d864142b41dc0 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 4.8E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0187 fa19f7e95fd08cfcba8d864142b41dc0 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 4.8E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0187 fa19f7e95fd08cfcba8d864142b41dc0 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 4.8E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0187 fa19f7e95fd08cfcba8d864142b41dc0 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 4.8E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0187 fa19f7e95fd08cfcba8d864142b41dc0 286 Gene3D G3DSA:3.40.50.720 1 272 2.1E-78 T 12-10-2018 Alide_0187 fa19f7e95fd08cfcba8d864142b41dc0 286 SUPERFAMILY SSF51735 14 254 7.52E-69 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0187 fa19f7e95fd08cfcba8d864142b41dc0 286 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 254 3.1E-53 T 12-10-2018 Alide_0305 116d8fb85a10a536931d32afd8cde3ef 409 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 22 397 5.6E-94 T 12-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB Alide_0305 116d8fb85a10a536931d32afd8cde3ef 409 SUPERFAMILY SSF103473 7 401 1.31E-20 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_0305 116d8fb85a10a536931d32afd8cde3ef 409 Gene3D G3DSA:1.20.1250.20 8 407 5.9E-12 T 12-10-2018 Alide_4158 9816b15231f66964a87d884aa00f792a 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 1.7E-179 T 12-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 Alide_4158 9816b15231f66964a87d884aa00f792a 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Alide_4158 9816b15231f66964a87d884aa00f792a 354 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Alide_4158 9816b15231f66964a87d884aa00f792a 354 PIRSF PIRSF001359 1 329 4.2E-82 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Alide_4158 9816b15231f66964a87d884aa00f792a 354 Gene3D G3DSA:3.20.20.70 1 354 7.3E-147 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_4158 9816b15231f66964a87d884aa00f792a 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 328 4.1E-96 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Alide_4158 9816b15231f66964a87d884aa00f792a 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 328 1.2E-92 T 12-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Alide_4158 9816b15231f66964a87d884aa00f792a 354 SUPERFAMILY SSF51569 3 328 3.22E-104 T 12-10-2018 Alide_1073 4cccc7568790f15b37d2f7a0e8b1dec7 468 SMART SM00646 298 453 9.1E-61 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Alide_1073 4cccc7568790f15b37d2f7a0e8b1dec7 468 Gene3D G3DSA:3.40.630.40 220 466 2.9E-77 T 12-10-2018 Alide_1073 4cccc7568790f15b37d2f7a0e8b1dec7 468 Gene3D G3DSA:2.60.40.3500 27 146 6.7E-29 T 12-10-2018 Alide_1073 4cccc7568790f15b37d2f7a0e8b1dec7 468 SUPERFAMILY SSF53187 233 456 4.39E-53 T 12-10-2018 Alide_1073 4cccc7568790f15b37d2f7a0e8b1dec7 468 Pfam PF11741 AMIN domain 40 143 1.1E-20 T 12-10-2018 IPR021731 AMIN domain Alide_1073 4cccc7568790f15b37d2f7a0e8b1dec7 468 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 234 453 5.6E-47 T 12-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Alide_2463 efc100bd7b67233045a999dd60843167 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 213 4.4E-15 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_2463 efc100bd7b67233045a999dd60843167 220 Gene3D G3DSA:1.10.3720.10 7 219 3.4E-55 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2463 efc100bd7b67233045a999dd60843167 220 SUPERFAMILY SSF161098 9 217 3.79E-50 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2463 efc100bd7b67233045a999dd60843167 220 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 214 5.7E-55 T 12-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 Alide_0191 4fc8534556cdbbd8d6b482e23feb43b0 273 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 263 1.7E-43 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_0191 4fc8534556cdbbd8d6b482e23feb43b0 273 SUPERFAMILY SSF52096 4 264 2.42E-64 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0191 4fc8534556cdbbd8d6b482e23feb43b0 273 Gene3D G3DSA:3.90.226.10 6 208 1.3E-56 T 12-10-2018 Alide_0191 4fc8534556cdbbd8d6b482e23feb43b0 273 Gene3D G3DSA:1.10.12.10 209 266 3.5E-18 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_1045 9e8e9b4cc568f6219eac9a9efd5cea2f 121 PRINTS PR01651 Protein-export SecG membrane protein signature 57 79 1.7E-36 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Alide_1045 9e8e9b4cc568f6219eac9a9efd5cea2f 121 PRINTS PR01651 Protein-export SecG membrane protein signature 41 57 1.7E-36 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Alide_1045 9e8e9b4cc568f6219eac9a9efd5cea2f 121 PRINTS PR01651 Protein-export SecG membrane protein signature 26 40 1.7E-36 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Alide_1045 9e8e9b4cc568f6219eac9a9efd5cea2f 121 PRINTS PR01651 Protein-export SecG membrane protein signature 6 26 1.7E-36 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Alide_1045 9e8e9b4cc568f6219eac9a9efd5cea2f 121 Pfam PF03840 Preprotein translocase SecG subunit 7 76 2.8E-21 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Alide_1045 9e8e9b4cc568f6219eac9a9efd5cea2f 121 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 6 76 4.1E-26 T 12-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Alide_0115 252078e47953bb5182033444f4af5c6f 553 Gene3D G3DSA:2.40.110.20 129 284 2.2E-53 T 12-10-2018 Alide_0115 252078e47953bb5182033444f4af5c6f 553 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 404 423 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0115 252078e47953bb5182033444f4af5c6f 553 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 179 279 1.6E-15 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0115 252078e47953bb5182033444f4af5c6f 553 Gene3D G3DSA:1.20.140.10 285 454 7.5E-39 T 12-10-2018 Alide_0115 252078e47953bb5182033444f4af5c6f 553 SUPERFAMILY SSF47203 287 450 2.9E-40 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0115 252078e47953bb5182033444f4af5c6f 553 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 289 445 8.3E-35 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0115 252078e47953bb5182033444f4af5c6f 553 SUPERFAMILY SSF56645 53 296 8.51E-34 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 332 339 - T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 PRINTS PR00481 Cytosol aminopeptidase signature 247 264 9.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 PRINTS PR00481 Cytosol aminopeptidase signature 269 290 9.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 PRINTS PR00481 Cytosol aminopeptidase signature 356 371 9.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 PRINTS PR00481 Cytosol aminopeptidase signature 306 327 9.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 PRINTS PR00481 Cytosol aminopeptidase signature 328 348 9.6E-56 T 12-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 6 480 34.446 T 12-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 SUPERFAMILY SSF52949 12 153 1.53E-17 T 12-10-2018 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 SUPERFAMILY SSF53187 165 477 1.16E-118 T 12-10-2018 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 Gene3D G3DSA:3.40.630.10 166 480 2.2E-134 T 12-10-2018 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 171 471 8.9E-124 T 12-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 40 133 3.1E-11 T 12-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Alide_2172 63eedc99a816dd8baec95ddf9a921917 497 Gene3D G3DSA:3.40.220.10 1 164 1.9E-20 T 12-10-2018 Alide_3965 820eefbb1895aadbe2ba44f9ee6ecefb 60 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 4 60 17.327 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3965 820eefbb1895aadbe2ba44f9ee6ecefb 60 Gene3D G3DSA:3.30.1390.20 3 60 3.0E-25 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Alide_3965 820eefbb1895aadbe2ba44f9ee6ecefb 60 Pfam PF00327 Ribosomal protein L30p/L7e 7 57 3.0E-18 T 12-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Alide_3965 820eefbb1895aadbe2ba44f9ee6ecefb 60 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 7 59 3.8E-24 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3965 820eefbb1895aadbe2ba44f9ee6ecefb 60 SUPERFAMILY SSF55129 5 59 9.03E-20 T 12-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Alide_3965 820eefbb1895aadbe2ba44f9ee6ecefb 60 PIRSF PIRSF002211 1 60 1.0E-25 T 12-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2242 0d59d74a203fe152a69ddf596423db72 83 Pfam PF04226 Transglycosylase associated protein 34 81 4.2E-15 T 12-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 Alide_1498 4ec49459aa7b062fd6a51860e56656a1 362 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 362 80.046 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_1498 4ec49459aa7b062fd6a51860e56656a1 362 Gene3D G3DSA:3.30.465.10 74 247 2.1E-52 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Alide_1498 4ec49459aa7b062fd6a51860e56656a1 362 SUPERFAMILY SSF56194 231 362 4.19E-43 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_1498 4ec49459aa7b062fd6a51860e56656a1 362 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 235 362 3.5E-30 T 12-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_1498 4ec49459aa7b062fd6a51860e56656a1 362 Gene3D G3DSA:3.30.43.10 1 71 1.6E-20 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Alide_1498 4ec49459aa7b062fd6a51860e56656a1 362 Pfam PF01565 FAD binding domain 24 154 8.5E-21 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Alide_1498 4ec49459aa7b062fd6a51860e56656a1 362 SUPERFAMILY SSF56176 9 218 4.67E-39 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_1498 4ec49459aa7b062fd6a51860e56656a1 362 Gene3D G3DSA:3.90.78.10 248 362 5.3E-43 T 12-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_1498 4ec49459aa7b062fd6a51860e56656a1 362 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 9 358 2.8E-65 T 12-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_0363 6191d069393c26ee0987d6a555acc94f 259 Gene3D G3DSA:3.40.50.300 1 253 2.7E-57 T 12-10-2018 Alide_0363 6191d069393c26ee0987d6a555acc94f 259 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 252 1.4E-13 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_0363 6191d069393c26ee0987d6a555acc94f 259 SMART SM00382 29 229 1.1E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0363 6191d069393c26ee0987d6a555acc94f 259 Pfam PF00005 ABC transporter 21 180 6.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0363 6191d069393c26ee0987d6a555acc94f 259 SUPERFAMILY SSF52540 4 252 7.61E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 Pfam PF02817 e3 binding domain 104 139 7.1E-14 T 12-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 182 400 1.2E-61 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 Gene3D G3DSA:2.40.50.100 1 102 6.6E-19 T 12-10-2018 Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 Gene3D G3DSA:3.30.559.10 160 398 8.2E-68 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 SUPERFAMILY SSF47005 98 139 1.57E-10 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 Pfam PF00364 Biotin-requiring enzyme 4 73 3.4E-14 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 SUPERFAMILY SSF52777 182 401 6.23E-63 T 12-10-2018 Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 Gene3D G3DSA:4.10.320.10 103 148 9.5E-14 T 12-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Alide_2407 6937126a9dff6812f09d4b8e811b1e19 402 SUPERFAMILY SSF51230 2 88 1.21E-20 T 12-10-2018 IPR011053 Single hybrid motif Alide_4023 33525fb28fc11ef64993b7f785bf2cce 230 TIGRFAM TIGR03746 conj_TIGR03746: integrating conjugative element protein, PFL_4703 family 4 207 5.8E-95 T 12-10-2018 IPR021548 Protein of unknown function DUF2895 Alide_4023 33525fb28fc11ef64993b7f785bf2cce 230 Pfam PF11444 Protein of unknown function (DUF2895) 6 206 1.3E-89 T 12-10-2018 IPR021548 Protein of unknown function DUF2895 Alide_1272 c77bca4951594638f258d866f05c4de5 158 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 9 153 9.2E-30 T 12-10-2018 IPR006522 Phage virion morphogensis protein Alide_1272 c77bca4951594638f258d866f05c4de5 158 Pfam PF05069 Phage virion morphogenesis family 9 155 5.3E-34 T 12-10-2018 IPR006522 Phage virion morphogensis protein Alide_1011 26256dccfb24452cfac4f6ab51690622 411 Pfam PF04055 Radical SAM superfamily 39 207 9.4E-21 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_1011 26256dccfb24452cfac4f6ab51690622 411 Pfam PF06969 HemN C-terminal domain 337 398 2.9E-14 T 12-10-2018 IPR010723 HemN, C-terminal Alide_1011 26256dccfb24452cfac4f6ab51690622 411 SUPERFAMILY SSF102114 26 409 7.59E-107 T 12-10-2018 Alide_1011 26256dccfb24452cfac4f6ab51690622 411 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 35 377 5.5E-107 T 12-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 Alide_1011 26256dccfb24452cfac4f6ab51690622 411 SMART SM00729 34 253 1.8E-55 T 12-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Alide_1011 26256dccfb24452cfac4f6ab51690622 411 Gene3D G3DSA:3.80.30.20 9 323 2.4E-97 T 12-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Alide_1462 52da976d37b4ea28572b4cfdbb850f3d 413 Pfam PF01266 FAD dependent oxidoreductase 3 395 3.9E-50 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_1462 52da976d37b4ea28572b4cfdbb850f3d 413 Gene3D G3DSA:3.50.50.60 78 396 6.9E-39 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1462 52da976d37b4ea28572b4cfdbb850f3d 413 SUPERFAMILY SSF51905 1 413 6.34E-43 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1462 52da976d37b4ea28572b4cfdbb850f3d 413 Gene3D G3DSA:3.50.50.60 1 60 4.7E-13 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1462 52da976d37b4ea28572b4cfdbb850f3d 413 Gene3D G3DSA:3.30.9.10 131 356 6.9E-39 T 12-10-2018 Alide_3494 3545a815bb12ee03d697f5e805ecbae1 206 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 181 4.0E-15 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_3494 3545a815bb12ee03d697f5e805ecbae1 206 Gene3D G3DSA:3.40.50.300 1 198 6.3E-37 T 12-10-2018 Alide_3494 3545a815bb12ee03d697f5e805ecbae1 206 PIRSF PIRSF009320 1 202 1.2E-27 T 12-10-2018 Alide_3494 3545a815bb12ee03d697f5e805ecbae1 206 SUPERFAMILY SSF52540 1 192 8.54E-32 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3336 738fa412354873fe562e7881eae848da 222 SMART SM00895 80 204 4.3E-17 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3336 738fa412354873fe562e7881eae848da 222 Gene3D G3DSA:1.10.10.10 5 72 7.1E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3336 738fa412354873fe562e7881eae848da 222 SUPERFAMILY SSF46785 7 74 2.51E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3336 738fa412354873fe562e7881eae848da 222 Pfam PF07729 FCD domain 81 203 7.0E-27 T 12-10-2018 IPR011711 GntR, C-terminal Alide_3336 738fa412354873fe562e7881eae848da 222 SMART SM00345 12 70 2.0E-16 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3336 738fa412354873fe562e7881eae848da 222 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 4.5E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3336 738fa412354873fe562e7881eae848da 222 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 4.5E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3336 738fa412354873fe562e7881eae848da 222 Gene3D G3DSA:1.20.120.530 73 211 4.2E-27 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_3336 738fa412354873fe562e7881eae848da 222 SUPERFAMILY SSF48008 77 209 2.62E-23 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_3336 738fa412354873fe562e7881eae848da 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 70 1.3E-17 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_0104 92094c13ae9a8c0d13ce7f3e75a84a91 387 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 80 105 - T 12-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 Alide_0104 92094c13ae9a8c0d13ce7f3e75a84a91 387 Gene3D G3DSA:3.20.20.120 100 351 6.8E-122 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_0104 92094c13ae9a8c0d13ce7f3e75a84a91 387 SMART SM00922 123 234 2.0E-10 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Alide_0104 92094c13ae9a8c0d13ce7f3e75a84a91 387 SUPERFAMILY SSF51604 93 363 2.1E-69 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_0104 92094c13ae9a8c0d13ce7f3e75a84a91 387 Gene3D G3DSA:3.30.390.10 13 363 6.8E-122 T 12-10-2018 IPR029017 Enolase-like, N-terminal Alide_0104 92094c13ae9a8c0d13ce7f3e75a84a91 387 Pfam PF13378 Enolase C-terminal domain-like 156 361 1.1E-53 T 12-10-2018 IPR029065 Enolase C-terminal domain-like Alide_0104 92094c13ae9a8c0d13ce7f3e75a84a91 387 SUPERFAMILY SSF54826 1 109 3.69E-30 T 12-10-2018 Alide_0104 92094c13ae9a8c0d13ce7f3e75a84a91 387 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 12 105 1.1E-20 T 12-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 10 200 2.7E-105 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 Gene3D G3DSA:3.90.226.10 1 202 4.9E-85 T 12-10-2018 Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 SUPERFAMILY SSF52096 19 200 3.4E-74 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 Pfam PF00574 Clp protease 21 200 1.0E-87 T 12-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 11 201 44.11 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 PRINTS PR00127 Clp protease catalytic subunit P signature 67 87 9.1E-51 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 PRINTS PR00127 Clp protease catalytic subunit P signature 176 195 9.1E-51 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 PRINTS PR00127 Clp protease catalytic subunit P signature 98 115 9.1E-51 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 PRINTS PR00127 Clp protease catalytic subunit P signature 119 138 9.1E-51 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_2988 a4400ee3f5d3015f33e61a4ec1345e45 202 PRINTS PR00127 Clp protease catalytic subunit P signature 27 42 9.1E-51 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_2920 513196d25818698990be85d4e2cc24cb 297 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 276 1.0E-41 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_2699 dac810b0130585793b7bfc77d71516d3 77 PIRSF PIRSF037031 1 77 1.4E-30 T 12-10-2018 IPR005243 Redox-active disulphide protein 2 Alide_2699 dac810b0130585793b7bfc77d71516d3 77 SUPERFAMILY SSF52833 2 76 4.49E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2699 dac810b0130585793b7bfc77d71516d3 77 Gene3D G3DSA:3.40.30.10 1 77 3.6E-27 T 12-10-2018 Alide_2699 dac810b0130585793b7bfc77d71516d3 77 Pfam PF13192 Thioredoxin domain 3 76 2.0E-26 T 12-10-2018 IPR012336 Thioredoxin-like fold Alide_1233 7140487a6bb5eb7177918233b05d878b 91 Pfam PF13986 Domain of unknown function (DUF4224) 7 50 1.6E-8 T 12-10-2018 IPR025319 Domain of unknown function DUF4224 Alide_0917 de21f2f6823950ca7b951ce80ba8350f 405 Pfam PF00482 Type II secretion system (T2SS), protein F 275 397 1.2E-28 T 12-10-2018 IPR018076 Type II secretion system F domain Alide_0917 de21f2f6823950ca7b951ce80ba8350f 405 Pfam PF00482 Type II secretion system (T2SS), protein F 71 194 2.2E-32 T 12-10-2018 IPR018076 Type II secretion system F domain Alide_0917 de21f2f6823950ca7b951ce80ba8350f 405 Gene3D G3DSA:1.20.81.30 258 368 8.3E-29 T 12-10-2018 Alide_0917 de21f2f6823950ca7b951ce80ba8350f 405 Gene3D G3DSA:1.20.81.30 59 173 1.6E-29 T 12-10-2018 Alide_0917 de21f2f6823950ca7b951ce80ba8350f 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 5.4E-19 T 12-10-2018 IPR003004 GspF/PilC family Alide_0917 de21f2f6823950ca7b951ce80ba8350f 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 5.4E-19 T 12-10-2018 IPR003004 GspF/PilC family Alide_0917 de21f2f6823950ca7b951ce80ba8350f 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 370 384 5.4E-19 T 12-10-2018 IPR003004 GspF/PilC family Alide_0917 de21f2f6823950ca7b951ce80ba8350f 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 386 405 5.4E-19 T 12-10-2018 IPR003004 GspF/PilC family Alide_3811 c6fb8987c3b17a30f234778266ffebf5 462 Gene3D G3DSA:3.90.1150.10 105 460 5.5E-70 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_3811 c6fb8987c3b17a30f234778266ffebf5 462 Gene3D G3DSA:3.40.640.10 143 359 5.5E-70 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3811 c6fb8987c3b17a30f234778266ffebf5 462 SUPERFAMILY SSF53383 100 461 2.36E-74 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3811 c6fb8987c3b17a30f234778266ffebf5 462 SUPERFAMILY SSF46785 5 75 2.38E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3811 c6fb8987c3b17a30f234778266ffebf5 462 Pfam PF00155 Aminotransferase class I and II 136 459 4.4E-34 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_3811 c6fb8987c3b17a30f234778266ffebf5 462 SMART SM00345 12 71 6.3E-14 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3811 c6fb8987c3b17a30f234778266ffebf5 462 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 71 1.7E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3811 c6fb8987c3b17a30f234778266ffebf5 462 Gene3D G3DSA:1.10.10.10 5 103 6.9E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2521 1accd24429d92843eea34bb3f2525111 239 Pfam PF01618 MotA/TolQ/ExbB proton channel family 95 205 1.2E-35 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Alide_4611 be2669bcb2dfe9c5fbd2eb38ac12fd97 239 SMART SM00887 54 229 0.0022 T 12-10-2018 IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain GO:0020037 Alide_4611 be2669bcb2dfe9c5fbd2eb38ac12fd97 239 Pfam PF09459 Ethylbenzene dehydrogenase 55 158 3.8E-7 T 12-10-2018 IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain GO:0020037 Alide_4611 be2669bcb2dfe9c5fbd2eb38ac12fd97 239 Pfam PF09459 Ethylbenzene dehydrogenase 173 228 1.9E-7 T 12-10-2018 IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain GO:0020037 Alide_4611 be2669bcb2dfe9c5fbd2eb38ac12fd97 239 Gene3D G3DSA:2.60.40.1190 39 239 4.7E-47 T 12-10-2018 Alide_4611 be2669bcb2dfe9c5fbd2eb38ac12fd97 239 TIGRFAM TIGR03477 DMSO_red_II_gam: DMSO reductase family type II enzyme, heme b subunit 40 239 2.3E-65 T 12-10-2018 IPR017838 DMSO reductase family, type II, haem b-binding subunit GO:0020037|GO:0042597 Alide_2812 b60dac6c3a98d4c4a95e4d59571dd588 274 Gene3D G3DSA:3.40.50.10090 11 260 1.6E-57 T 12-10-2018 Alide_2812 b60dac6c3a98d4c4a95e4d59571dd588 274 SUPERFAMILY SSF69618 9 268 6.8E-38 T 12-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2812 b60dac6c3a98d4c4a95e4d59571dd588 274 Pfam PF02602 Uroporphyrinogen-III synthase HemD 22 257 6.5E-26 T 12-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Alide_2812 b60dac6c3a98d4c4a95e4d59571dd588 274 Gene3D G3DSA:3.40.50.10090 39 192 1.6E-57 T 12-10-2018 Alide_1325 6316abf2942f3eb99d6b20bc48f18776 309 Gene3D G3DSA:3.20.20.70 7 301 2.2E-98 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1325 6316abf2942f3eb99d6b20bc48f18776 309 SUPERFAMILY SSF51569 7 289 1.48E-64 T 12-10-2018 Alide_1325 6316abf2942f3eb99d6b20bc48f18776 309 Pfam PF00682 HMGL-like 14 283 1.6E-42 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Alide_1325 6316abf2942f3eb99d6b20bc48f18776 309 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 17 33 - T 12-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Alide_2018 ba046cdba3613b889ecc1e6a98cce754 609 SUPERFAMILY SSF50998 456 579 5.49E-6 T 12-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Alide_2871 7838795ce77e003dd773f02451e6c6ad 191 SUPERFAMILY SSF81342 3 184 6.83E-29 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_2871 7838795ce77e003dd773f02451e6c6ad 191 Pfam PF01292 Prokaryotic cytochrome b561 7 177 4.0E-21 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Alide_3328 4f1f5def3ceacca9189193045cef71ba 479 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 205 260 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3328 4f1f5def3ceacca9189193045cef71ba 479 Gene3D G3DSA:1.20.210.10 4 475 8.0E-206 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3328 4f1f5def3ceacca9189193045cef71ba 479 SUPERFAMILY SSF81442 11 469 9.03E-127 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3328 4f1f5def3ceacca9189193045cef71ba 479 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 15 445 7.0E-115 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3328 4f1f5def3ceacca9189193045cef71ba 479 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 11 475 9.4E-237 T 12-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 Alide_3419 2d5ef6bb0d5e3adcab17e3e3fa8ad461 289 SMART SM00342 204 286 1.4E-24 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_3419 2d5ef6bb0d5e3adcab17e3e3fa8ad461 289 Pfam PF12852 Cupin 12 169 1.2E-28 T 12-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain Alide_3419 2d5ef6bb0d5e3adcab17e3e3fa8ad461 289 SUPERFAMILY SSF46689 188 237 5.65E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3419 2d5ef6bb0d5e3adcab17e3e3fa8ad461 289 Pfam PF12833 Helix-turn-helix domain 210 287 5.9E-18 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_3419 2d5ef6bb0d5e3adcab17e3e3fa8ad461 289 Gene3D G3DSA:1.10.10.60 189 247 2.2E-11 T 12-10-2018 Alide_3419 2d5ef6bb0d5e3adcab17e3e3fa8ad461 289 SUPERFAMILY SSF46689 240 287 1.03E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3419 2d5ef6bb0d5e3adcab17e3e3fa8ad461 289 Gene3D G3DSA:1.10.10.60 248 289 9.9E-10 T 12-10-2018 Alide_3419 2d5ef6bb0d5e3adcab17e3e3fa8ad461 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 241 282 - T 12-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Alide_2685 064230a92657030517641ad410a7ec46 304 SUPERFAMILY SSF50249 194 298 1.46E-25 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_2685 064230a92657030517641ad410a7ec46 304 Gene3D G3DSA:3.30.470.30 72 172 4.3E-50 T 12-10-2018 Alide_2685 064230a92657030517641ad410a7ec46 304 Pfam PF14743 DNA ligase OB-like domain 233 298 2.0E-24 T 12-10-2018 IPR029319 DNA ligase, OB-like domain Alide_2685 064230a92657030517641ad410a7ec46 304 Gene3D G3DSA:3.30.1490.70 52 211 4.3E-50 T 12-10-2018 Alide_2685 064230a92657030517641ad410a7ec46 304 SUPERFAMILY SSF56091 47 219 4.89E-36 T 12-10-2018 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 SMART SM00864 16 205 5.5E-102 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 Pfam PF12327 FtsZ family, C-terminal domain 222 317 1.2E-27 T 12-10-2018 IPR024757 Cell division protein FtsZ, C-terminal Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 SUPERFAMILY SSF55307 207 325 2.98E-37 T 12-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 173 2.5E-37 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 336 34.317 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 PRINTS PR00423 Cell division protein FtsZ signature 98 118 5.7E-45 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 PRINTS PR00423 Cell division protein FtsZ signature 189 211 5.7E-45 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 PRINTS PR00423 Cell division protein FtsZ signature 212 233 5.7E-45 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 PRINTS PR00423 Cell division protein FtsZ signature 126 147 5.7E-45 T 12-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 SUPERFAMILY SSF52490 16 208 1.01E-61 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 10 332 2.4E-114 T 12-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 SMART SM00865 207 326 5.1E-50 T 12-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 12-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Alide_3701 f0aef7e5408e152c2d4c25c882ce4a32 406 Gene3D G3DSA:3.40.50.1440 13 318 4.1E-111 T 12-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Alide_3744 f1b75dbefc088c0cfac7d2b92ed2096d 389 Gene3D G3DSA:3.30.1540.10 238 327 1.6E-107 T 12-10-2018 Alide_3744 f1b75dbefc088c0cfac7d2b92ed2096d 389 Gene3D G3DSA:3.40.50.10540 14 378 1.6E-107 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3744 f1b75dbefc088c0cfac7d2b92ed2096d 389 Pfam PF02515 CoA-transferase family III 15 376 8.4E-117 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_3744 f1b75dbefc088c0cfac7d2b92ed2096d 389 SUPERFAMILY SSF89796 13 379 3.14E-112 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0058 9cbf558182ba50e91483e880ccc4f524 421 Pfam PF07690 Major Facilitator Superfamily 23 370 1.7E-33 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_0058 9cbf558182ba50e91483e880ccc4f524 421 SUPERFAMILY SSF103473 8 406 3.79E-50 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_0058 9cbf558182ba50e91483e880ccc4f524 421 Gene3D G3DSA:1.20.1250.20 10 197 8.4E-29 T 12-10-2018 Alide_0058 9cbf558182ba50e91483e880ccc4f524 421 Gene3D G3DSA:1.20.1250.20 221 413 6.2E-13 T 12-10-2018 Alide_4059 6f28a38618aa6e5e1ad0ea6ac43641a1 421 Gene3D G3DSA:1.20.1530.20 19 400 2.9E-22 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily Alide_4059 6f28a38618aa6e5e1ad0ea6ac43641a1 421 Pfam PF00999 Sodium/hydrogen exchanger family 25 390 3.8E-19 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Alide_0810 be9503145dbeac9914f58b3a61a310af 406 Pfam PF01546 Peptidase family M20/M25/M40 85 397 9.6E-32 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_0810 be9503145dbeac9914f58b3a61a310af 406 Gene3D G3DSA:3.40.630.10 24 385 1.4E-125 T 12-10-2018 Alide_0810 be9503145dbeac9914f58b3a61a310af 406 Gene3D G3DSA:3.30.70.360 193 309 1.4E-125 T 12-10-2018 Alide_0810 be9503145dbeac9914f58b3a61a310af 406 SUPERFAMILY SSF53187 13 399 1.29E-80 T 12-10-2018 Alide_0810 be9503145dbeac9914f58b3a61a310af 406 PIRSF PIRSF005962 10 403 8.9E-117 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_0810 be9503145dbeac9914f58b3a61a310af 406 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 23 388 5.7E-103 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_0810 be9503145dbeac9914f58b3a61a310af 406 Pfam PF07687 Peptidase dimerisation domain 198 294 1.6E-4 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_0810 be9503145dbeac9914f58b3a61a310af 406 SUPERFAMILY SSF55031 196 310 2.88E-25 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_3247 fe66c7b6c338d9c55bb09451270aed0a 168 Pfam PF12019 Type II transport protein GspH 31 155 6.6E-13 T 12-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 Alide_3247 fe66c7b6c338d9c55bb09451270aed0a 168 SUPERFAMILY SSF54523 1 82 4.24E-12 T 12-10-2018 Alide_3247 fe66c7b6c338d9c55bb09451270aed0a 168 Gene3D G3DSA:3.30.700.10 1 148 1.7E-11 T 12-10-2018 Alide_0989 db70a329deaec235be1a3de412cd2146 287 PIRSF PIRSF005052 3 286 3.2E-104 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 Alide_0989 db70a329deaec235be1a3de412cd2146 287 SUPERFAMILY SSF52540 4 159 1.44E-11 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0989 db70a329deaec235be1a3de412cd2146 287 Pfam PF03668 P-loop ATPase protein family 3 285 4.0E-93 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 Alide_0989 db70a329deaec235be1a3de412cd2146 287 Gene3D G3DSA:3.40.50.300 32 167 3.2E-6 T 12-10-2018 Alide_0989 db70a329deaec235be1a3de412cd2146 287 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 3 286 39.262 T 12-10-2018 IPR005337 RapZ-like family GO:0005524 Alide_0205 eaa9ff37c5c101ba231df6f6d84afa35 1029 Gene3D G3DSA:3.30.420.10 699 799 1.3E-9 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_0205 eaa9ff37c5c101ba231df6f6d84afa35 1029 Pfam PF13395 HNH endonuclease 604 657 1.1E-18 T 12-10-2018 IPR003615 HNH nuclease Alide_0205 eaa9ff37c5c101ba231df6f6d84afa35 1029 Gene3D G3DSA:3.30.420.10 481 588 9.0E-7 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_0205 eaa9ff37c5c101ba231df6f6d84afa35 1029 TIGRFAM TIGR01865 cas_Csn1: CRISPR subtype II RNA-guided endonuclease Cas9 255 786 8.6E-53 T 12-10-2018 IPR028629 CRISPR-associated endonuclease Cas9 GO:0004519 Alide_0205 eaa9ff37c5c101ba231df6f6d84afa35 1029 Hamap MF_01480 CRISPR-associated endonuclease Cas9 [cas9]. 4 1024 15.712 T 12-10-2018 IPR028629 CRISPR-associated endonuclease Cas9 GO:0004519 Alide_4634 6004981a599149d93b9a60344df088f3 118 SUPERFAMILY SSF51182 23 113 1.95E-19 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_4634 6004981a599149d93b9a60344df088f3 118 Pfam PF07883 Cupin domain 36 105 3.1E-14 T 12-10-2018 IPR013096 Cupin 2, conserved barrel Alide_4634 6004981a599149d93b9a60344df088f3 118 Gene3D G3DSA:2.60.120.10 1 118 1.1E-35 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1105 a52be5db32b3361dfab799a740f6a0b0 405 SUPERFAMILY SSF103473 12 393 4.97E-61 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1105 a52be5db32b3361dfab799a740f6a0b0 405 Pfam PF07690 Major Facilitator Superfamily 15 327 3.1E-30 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_1105 a52be5db32b3361dfab799a740f6a0b0 405 Gene3D G3DSA:1.20.1250.20 2 394 1.1E-49 T 12-10-2018 Alide_0654 d53f7751543185f5e56acc3b5bbc8760 303 SUPERFAMILY SSF158544 99 191 8.11E-21 T 12-10-2018 IPR038072 GspK, central domain superfamily Alide_0654 d53f7751543185f5e56acc3b5bbc8760 303 Pfam PF03934 Type II secretion system (T2SS), protein K 99 213 1.9E-20 T 12-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 Alide_0654 d53f7751543185f5e56acc3b5bbc8760 303 Gene3D G3DSA:1.10.40.60 196 209 3.7E-17 T 12-10-2018 IPR038072 GspK, central domain superfamily Alide_0654 d53f7751543185f5e56acc3b5bbc8760 303 Gene3D G3DSA:1.10.40.60 108 195 3.7E-17 T 12-10-2018 IPR038072 GspK, central domain superfamily Alide_2630 6122160242e102d6020f68c738a48f14 218 SUPERFAMILY SSF52540 1 215 2.24E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2630 6122160242e102d6020f68c738a48f14 218 PRINTS PR00094 Adenylate kinase signature 4 17 3.2E-36 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Alide_2630 6122160242e102d6020f68c738a48f14 218 PRINTS PR00094 Adenylate kinase signature 81 97 3.2E-36 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Alide_2630 6122160242e102d6020f68c738a48f14 218 PRINTS PR00094 Adenylate kinase signature 173 187 3.2E-36 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Alide_2630 6122160242e102d6020f68c738a48f14 218 PRINTS PR00094 Adenylate kinase signature 32 46 3.2E-36 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Alide_2630 6122160242e102d6020f68c738a48f14 218 PRINTS PR00094 Adenylate kinase signature 156 171 3.2E-36 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Alide_2630 6122160242e102d6020f68c738a48f14 218 Gene3D G3DSA:3.40.50.300 1 218 1.5E-78 T 12-10-2018 Alide_2630 6122160242e102d6020f68c738a48f14 218 TIGRFAM TIGR01351 adk: adenylate kinase 2 216 3.3E-75 T 12-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Alide_2630 6122160242e102d6020f68c738a48f14 218 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 12-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Alide_2630 6122160242e102d6020f68c738a48f14 218 Hamap MF_00235 Adenylate kinase [adk]. 1 217 54.418 T 12-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Alide_2630 6122160242e102d6020f68c738a48f14 218 Pfam PF00406 Adenylate kinase 5 185 4.7E-58 T 12-10-2018 Alide_2630 6122160242e102d6020f68c738a48f14 218 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.2E-18 T 12-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Alide_2208 839e4bb17f7c4a34e0ed34d71314eb72 406 Gene3D G3DSA:3.40.640.10 20 264 3.6E-156 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2208 839e4bb17f7c4a34e0ed34d71314eb72 406 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 5 397 52.726 T 12-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 Alide_2208 839e4bb17f7c4a34e0ed34d71314eb72 406 SUPERFAMILY SSF53383 8 393 1.12E-110 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2208 839e4bb17f7c4a34e0ed34d71314eb72 406 Pfam PF00266 Aminotransferase class-V 9 370 9.7E-83 T 12-10-2018 IPR000192 Aminotransferase class V domain Alide_2208 839e4bb17f7c4a34e0ed34d71314eb72 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 199 218 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Alide_2208 839e4bb17f7c4a34e0ed34d71314eb72 406 PIRSF PIRSF005572 6 386 3.7E-127 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Alide_2208 839e4bb17f7c4a34e0ed34d71314eb72 406 Gene3D G3DSA:3.90.1150.10 9 377 3.6E-156 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2208 839e4bb17f7c4a34e0ed34d71314eb72 406 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 7 406 2.7E-220 T 12-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 SMART SM00881 15 110 6.8E-26 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 Gene3D G3DSA:3.30.470.20 485 694 1.6E-53 T 12-10-2018 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 Gene3D G3DSA:3.40.50.261 313 468 4.0E-18 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 Gene3D G3DSA:3.40.50.720 12 139 9.2E-32 T 12-10-2018 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 Pfam PF13380 CoA binding domain 19 146 1.9E-21 T 12-10-2018 IPR003781 CoA-binding GO:0048037 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 SUPERFAMILY SSF52210 315 465 6.28E-21 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 Gene3D G3DSA:3.40.50.261 150 304 4.0E-38 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 Pfam PF13549 ATP-grasp domain 482 694 2.0E-45 T 12-10-2018 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 SUPERFAMILY SSF51735 9 149 1.87E-30 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3215 4d46c820312ec7a89527bf80e3346712 699 SUPERFAMILY SSF56059 484 695 2.21E-25 T 12-10-2018 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 Gene3D G3DSA:3.30.1490.20 502 577 1.6E-53 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_3215 4d46c820312ec7a89527bf80e3346712 699 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 165 300 1.9E-36 T 12-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Alide_3215 4d46c820312ec7a89527bf80e3346712 699 SUPERFAMILY SSF52210 142 302 1.7E-28 T 12-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Alide_2576 6a6b70c72706e0c76a3bcf2dc4eaec9d 233 PIRSF PIRSF006232 1 233 5.3E-53 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Alide_2576 6a6b70c72706e0c76a3bcf2dc4eaec9d 233 Gene3D G3DSA:2.60.120.10 8 231 7.5E-88 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_2576 6a6b70c72706e0c76a3bcf2dc4eaec9d 233 Pfam PF02678 Pirin 7 119 2.2E-35 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Alide_2576 6a6b70c72706e0c76a3bcf2dc4eaec9d 233 SUPERFAMILY SSF51182 1 233 2.12E-75 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_2576 6a6b70c72706e0c76a3bcf2dc4eaec9d 233 Gene3D G3DSA:2.60.120.10 11 135 7.5E-88 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1494 48ea920aced1e8abbb29c4df75fc7684 210 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 9 206 20.153 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Alide_1494 48ea920aced1e8abbb29c4df75fc7684 210 SMART SM01207 12 198 2.3E-83 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Alide_1494 48ea920aced1e8abbb29c4df75fc7684 210 Pfam PF02660 Glycerol-3-phosphate acyltransferase 14 197 1.5E-50 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Alide_1494 48ea920aced1e8abbb29c4df75fc7684 210 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 5 206 7.4E-55 T 12-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 566 1.9E-102 T 12-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 Gene3D G3DSA:2.40.50.140 1 107 3.4E-36 T 12-10-2018 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 SUPERFAMILY SSF50249 3 107 3.43E-34 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 Gene3D G3DSA:3.30.930.10 120 590 1.5E-194 T 12-10-2018 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 Pfam PF01336 OB-fold nucleic acid binding domain 20 102 1.5E-17 T 12-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 3 590 1.2E-240 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 SUPERFAMILY SSF55261 293 418 7.36E-43 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 3 592 33.455 T 12-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 Gene3D G3DSA:3.30.1360.30 274 428 1.5E-194 T 12-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 Pfam PF02938 GAD domain 314 408 5.2E-28 T 12-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 SUPERFAMILY SSF55681 113 593 1.58E-102 T 12-10-2018 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 PRINTS PR01042 Aspartyl-tRNA synthetase signature 526 540 1.7E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 PRINTS PR01042 Aspartyl-tRNA synthetase signature 193 205 1.7E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 PRINTS PR01042 Aspartyl-tRNA synthetase signature 482 498 1.7E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0960 ddee8a6bd3a81a6e1dffdb7871e49100 599 PRINTS PR01042 Aspartyl-tRNA synthetase signature 210 223 1.7E-26 T 12-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Alide_0050 a8d24a346925f6acd380ac594ec27394 215 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 27 210 8.5E-47 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Alide_0050 a8d24a346925f6acd380ac594ec27394 215 PIRSF PIRSF003078 4 214 4.6E-50 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Alide_0050 a8d24a346925f6acd380ac594ec27394 215 Gene3D G3DSA:3.40.50.150 3 215 4.0E-68 T 12-10-2018 Alide_0050 a8d24a346925f6acd380ac594ec27394 215 SUPERFAMILY SSF53335 8 213 4.6E-40 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0050 a8d24a346925f6acd380ac594ec27394 215 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 15 210 26.37 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Alide_0050 a8d24a346925f6acd380ac594ec27394 215 Pfam PF02527 rRNA small subunit methyltransferase G 22 205 1.5E-47 T 12-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Alide_1457 3082d97454da80cf1f81b9baa5fa4cd2 271 Pfam PF02405 Permease MlaE 56 260 1.3E-26 T 12-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 Alide_1914 6fa8a17ddc2e7aa807b63047d2477d77 184 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 27 176 1.8E-17 T 12-10-2018 IPR009936 Protein of unknown function DUF1468 Alide_1584 2b2b44b0ad71d47b6f5167cd1f7fdeab 220 SUPERFAMILY SSF48498 94 216 1.71E-19 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_1584 2b2b44b0ad71d47b6f5167cd1f7fdeab 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 8.7E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_1584 2b2b44b0ad71d47b6f5167cd1f7fdeab 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 8.7E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_1584 2b2b44b0ad71d47b6f5167cd1f7fdeab 220 Pfam PF16859 Bacterial transcriptional repressor C-terminal 112 182 9.0E-12 T 12-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Alide_1584 2b2b44b0ad71d47b6f5167cd1f7fdeab 220 Gene3D G3DSA:1.10.357.10 70 220 1.2E-18 T 12-10-2018 Alide_1584 2b2b44b0ad71d47b6f5167cd1f7fdeab 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 73 2.9E-20 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_1584 2b2b44b0ad71d47b6f5167cd1f7fdeab 220 SUPERFAMILY SSF46689 14 89 1.35E-20 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1584 2b2b44b0ad71d47b6f5167cd1f7fdeab 220 Gene3D G3DSA:1.10.10.60 8 69 3.0E-23 T 12-10-2018 Alide_1620 300eaa85fccfb37a26d3f52e0122e5f6 313 Pfam PF01571 Aminomethyltransferase folate-binding domain 15 130 1.3E-12 T 12-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain Alide_1620 300eaa85fccfb37a26d3f52e0122e5f6 313 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 177 240 7.8E-23 T 12-10-2018 IPR017703 YgfZ/GcvT conserved site Alide_1620 300eaa85fccfb37a26d3f52e0122e5f6 313 Gene3D G3DSA:2.40.30.160 185 295 3.5E-30 T 12-10-2018 Alide_1620 300eaa85fccfb37a26d3f52e0122e5f6 313 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 215 271 2.0E-4 T 12-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Alide_1620 300eaa85fccfb37a26d3f52e0122e5f6 313 PIRSF PIRSF006487 156 305 0.06 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Alide_1620 300eaa85fccfb37a26d3f52e0122e5f6 313 PIRSF PIRSF006487 13 148 1.6E-10 T 12-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Alide_1620 300eaa85fccfb37a26d3f52e0122e5f6 313 SUPERFAMILY SSF103025 13 231 2.83E-51 T 12-10-2018 Alide_1620 300eaa85fccfb37a26d3f52e0122e5f6 313 Gene3D G3DSA:3.30.70.1400 23 108 5.0E-23 T 12-10-2018 Alide_0872 82ea1477f4ff34bbe171c3670f593e32 424 Gene3D G3DSA:3.65.10.10 6 420 4.0E-157 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Alide_0872 82ea1477f4ff34bbe171c3670f593e32 424 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 423 43.76 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_0872 82ea1477f4ff34bbe171c3670f593e32 424 SUPERFAMILY SSF55205 1 423 7.68E-135 T 12-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Alide_0872 82ea1477f4ff34bbe171c3670f593e32 424 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 422 3.1E-167 T 12-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_0872 82ea1477f4ff34bbe171c3670f593e32 424 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 413 1.9E-102 T 12-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Alide_0872 82ea1477f4ff34bbe171c3670f593e32 424 Gene3D G3DSA:3.65.10.10 21 234 4.0E-157 T 12-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Alide_0969 0e5388c6cae2f38979ae62a797cdfd3f 336 Gene3D G3DSA:1.10.760.10 171 294 6.5E-37 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0969 0e5388c6cae2f38979ae62a797cdfd3f 336 SUPERFAMILY SSF46626 175 282 2.44E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0969 0e5388c6cae2f38979ae62a797cdfd3f 336 SUPERFAMILY SSF46626 78 165 5.52E-25 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0969 0e5388c6cae2f38979ae62a797cdfd3f 336 Gene3D G3DSA:1.10.760.10 34 170 1.0E-40 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0969 0e5388c6cae2f38979ae62a797cdfd3f 336 Pfam PF00034 Cytochrome c 185 273 3.8E-10 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0574 6b2614b4385dcd3d7cebc12ee654e623 416 Gene3D G3DSA:3.40.50.10540 4 405 4.4E-109 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0574 6b2614b4385dcd3d7cebc12ee654e623 416 Pfam PF02515 CoA-transferase family III 5 387 2.6E-107 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0574 6b2614b4385dcd3d7cebc12ee654e623 416 SUPERFAMILY SSF89796 3 411 3.53E-112 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0574 6b2614b4385dcd3d7cebc12ee654e623 416 Gene3D G3DSA:3.30.1540.10 235 341 4.4E-109 T 12-10-2018 Alide_2841 d736cf226c3c5f1f53fc51e940632262 324 SUPERFAMILY SSF53659 21 311 6.58E-64 T 12-10-2018 Alide_2841 d736cf226c3c5f1f53fc51e940632262 324 Pfam PF01515 Phosphate acetyl/butaryl transferase 91 306 8.3E-42 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Alide_2841 d736cf226c3c5f1f53fc51e940632262 324 Gene3D G3DSA:3.40.718.10 15 312 2.8E-90 T 12-10-2018 Alide_2841 d736cf226c3c5f1f53fc51e940632262 324 PIRSF PIRSF000428 15 314 2.0E-81 T 12-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Alide_3748 0053bf766995345f58726561fdda0533 255 TIGRFAM TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase 4 253 3.8E-132 T 12-10-2018 IPR017619 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase Alide_3748 0053bf766995345f58726561fdda0533 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.4E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3748 0053bf766995345f58726561fdda0533 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.4E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3748 0053bf766995345f58726561fdda0533 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.4E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3748 0053bf766995345f58726561fdda0533 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.4E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3748 0053bf766995345f58726561fdda0533 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.4E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3748 0053bf766995345f58726561fdda0533 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.4E-40 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3748 0053bf766995345f58726561fdda0533 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_3748 0053bf766995345f58726561fdda0533 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 5.6E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3748 0053bf766995345f58726561fdda0533 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.6E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3748 0053bf766995345f58726561fdda0533 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 5.6E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3748 0053bf766995345f58726561fdda0533 255 SUPERFAMILY SSF51735 1 254 5.49E-83 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3748 0053bf766995345f58726561fdda0533 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 252 4.4E-66 T 12-10-2018 Alide_3748 0053bf766995345f58726561fdda0533 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 190 1.1E-4 T 12-10-2018 Alide_3748 0053bf766995345f58726561fdda0533 255 Gene3D G3DSA:3.40.50.720 1 254 1.2E-84 T 12-10-2018 Alide_3784 5fe1270aea3ddbadb275cbc16592b3e3 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 65 83 2.3E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3784 5fe1270aea3ddbadb275cbc16592b3e3 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 46 62 2.3E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3784 5fe1270aea3ddbadb275cbc16592b3e3 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 241 259 2.3E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3784 5fe1270aea3ddbadb275cbc16592b3e3 370 Pfam PF13458 Periplasmic binding protein 23 353 1.9E-59 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_3784 5fe1270aea3ddbadb275cbc16592b3e3 370 Gene3D G3DSA:3.40.50.2300 24 358 4.8E-104 T 12-10-2018 Alide_3784 5fe1270aea3ddbadb275cbc16592b3e3 370 SUPERFAMILY SSF53822 24 367 4.07E-72 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_3784 5fe1270aea3ddbadb275cbc16592b3e3 370 Gene3D G3DSA:3.40.50.2300 143 362 4.8E-104 T 12-10-2018 Alide_3939 1b0cf28d93813c9c0fd360fbd25f4394 276 SUPERFAMILY SSF48179 152 250 8.84E-18 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_3939 1b0cf28d93813c9c0fd360fbd25f4394 276 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 130 4.5E-8 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Alide_3939 1b0cf28d93813c9c0fd360fbd25f4394 276 Gene3D G3DSA:3.40.50.720 1 158 1.4E-27 T 12-10-2018 Alide_3939 1b0cf28d93813c9c0fd360fbd25f4394 276 SUPERFAMILY SSF51735 2 150 1.97E-17 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3939 1b0cf28d93813c9c0fd360fbd25f4394 276 Gene3D G3DSA:1.10.1040.10 159 258 1.5E-21 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_4371 6a005d3f1639471adaabebacde74296c 258 Pfam PF00005 ABC transporter 43 183 6.8E-30 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4371 6a005d3f1639471adaabebacde74296c 258 SMART SM00382 52 247 1.0E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4371 6a005d3f1639471adaabebacde74296c 258 Gene3D G3DSA:3.40.50.300 24 256 6.6E-58 T 12-10-2018 Alide_4371 6a005d3f1639471adaabebacde74296c 258 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_4371 6a005d3f1639471adaabebacde74296c 258 SUPERFAMILY SSF52540 26 251 1.11E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1046 030227c833dca27f3fe0c5a24593b8a0 129 Gene3D G3DSA:1.20.58.1610 7 129 4.5E-46 T 12-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1046 030227c833dca27f3fe0c5a24593b8a0 129 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 12 129 20.877 T 12-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 Alide_1046 030227c833dca27f3fe0c5a24593b8a0 129 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 32 128 5.9E-40 T 12-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_4076 fe67fa74cc7e7a3f226cd7f42e2de1f3 271 SUPERFAMILY SSF101327 19 193 1.02E-5 T 12-10-2018 IPR036255 YgfB-like superfamily Alide_4076 fe67fa74cc7e7a3f226cd7f42e2de1f3 271 Pfam PF02810 SEC-C motif 253 270 5.9E-11 T 12-10-2018 IPR004027 SEC-C motif Alide_4076 fe67fa74cc7e7a3f226cd7f42e2de1f3 271 Pfam PF03695 Uncharacterised protein family (UPF0149) 18 236 1.0E-36 T 12-10-2018 IPR011978 Uncharacterised protein family UPF0149 Alide_4076 fe67fa74cc7e7a3f226cd7f42e2de1f3 271 SUPERFAMILY SSF103642 250 270 6.87E-8 T 12-10-2018 Alide_4076 fe67fa74cc7e7a3f226cd7f42e2de1f3 271 Gene3D G3DSA:3.10.450.50 202 271 1.7E-10 T 12-10-2018 Alide_4329 b4b3556780e66d381a14282d6c5530e8 460 Gene3D G3DSA:3.40.50.80 333 457 1.4E-14 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_4329 b4b3556780e66d381a14282d6c5530e8 460 Pfam PF01794 Ferric reductase like transmembrane component 52 180 5.0E-17 T 12-10-2018 IPR013130 Ferric reductase transmembrane component-like domain Alide_4329 b4b3556780e66d381a14282d6c5530e8 460 SUPERFAMILY SSF63380 247 329 1.34E-13 T 12-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Alide_4329 b4b3556780e66d381a14282d6c5530e8 460 Gene3D G3DSA:2.40.30.10 221 327 9.1E-12 T 12-10-2018 Alide_4329 b4b3556780e66d381a14282d6c5530e8 460 Pfam PF08022 FAD-binding domain 247 327 9.2E-6 T 12-10-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 Alide_4329 b4b3556780e66d381a14282d6c5530e8 460 PRINTS PR00410 Phenol hydroxylase reductase family signature 340 359 3.5E-5 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_4329 b4b3556780e66d381a14282d6c5530e8 460 PRINTS PR00410 Phenol hydroxylase reductase family signature 427 435 3.5E-5 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_4329 b4b3556780e66d381a14282d6c5530e8 460 PRINTS PR00410 Phenol hydroxylase reductase family signature 324 333 3.5E-5 T 12-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 Alide_4329 b4b3556780e66d381a14282d6c5530e8 460 SUPERFAMILY SSF52343 325 459 9.17E-16 T 12-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Alide_1725 b44b4924e6cdd3151c817dd600dfde57 351 SUPERFAMILY SSF53850 39 285 5.79E-34 T 12-10-2018 Alide_1725 b44b4924e6cdd3151c817dd600dfde57 351 Gene3D G3DSA:3.40.190.10 121 231 1.6E-94 T 12-10-2018 Alide_1725 b44b4924e6cdd3151c817dd600dfde57 351 Pfam PF09084 NMT1/THI5 like 53 264 1.1E-15 T 12-10-2018 IPR015168 SsuA/THI5-like Alide_1725 b44b4924e6cdd3151c817dd600dfde57 351 Gene3D G3DSA:3.40.190.10 42 341 1.6E-94 T 12-10-2018 Alide_2664 347d2e180c9657ddd4b20a36f544b232 690 Pfam PF13307 Helicase C-terminal domain 498 661 2.7E-32 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Alide_2664 347d2e180c9657ddd4b20a36f544b232 690 Pfam PF06733 DEAD_2 181 250 1.8E-5 T 12-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 Alide_2664 347d2e180c9657ddd4b20a36f544b232 690 Gene3D G3DSA:3.40.50.300 479 677 3.0E-31 T 12-10-2018 Alide_2664 347d2e180c9657ddd4b20a36f544b232 690 Gene3D G3DSA:3.40.50.300 25 261 2.1E-43 T 12-10-2018 Alide_2664 347d2e180c9657ddd4b20a36f544b232 690 SMART SM00491 509 649 6.9E-31 T 12-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Alide_2664 347d2e180c9657ddd4b20a36f544b232 690 SUPERFAMILY SSF52540 14 636 1.54E-20 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0820 126731d7e48c4afa78b0ebb5c11e0c4e 342 Pfam PF00293 NUDIX domain 210 334 3.9E-17 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Alide_0820 126731d7e48c4afa78b0ebb5c11e0c4e 342 Pfam PF01467 Cytidylyltransferase-like 7 66 1.6E-10 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Alide_0820 126731d7e48c4afa78b0ebb5c11e0c4e 342 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 61 4.3E-12 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Alide_0820 126731d7e48c4afa78b0ebb5c11e0c4e 342 Gene3D G3DSA:3.40.50.620 1 197 1.0E-60 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_0820 126731d7e48c4afa78b0ebb5c11e0c4e 342 SUPERFAMILY SSF55811 187 340 3.38E-28 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_0820 126731d7e48c4afa78b0ebb5c11e0c4e 342 Gene3D G3DSA:3.90.79.10 198 340 2.3E-40 T 12-10-2018 Alide_0820 126731d7e48c4afa78b0ebb5c11e0c4e 342 SUPERFAMILY SSF52374 5 146 1.72E-19 T 12-10-2018 Alide_0762 0c70ef30b0b31eb1039e4c66c2182355 286 Pfam PF13480 Acetyltransferase (GNAT) domain 108 248 6.3E-20 T 12-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Alide_0762 0c70ef30b0b31eb1039e4c66c2182355 286 SUPERFAMILY SSF55729 97 262 3.18E-13 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_1639 3e0f9385c11493084154be5d632f6bc9 254 Gene3D G3DSA:3.40.50.720 3 253 5.2E-87 T 12-10-2018 Alide_1639 3e0f9385c11493084154be5d632f6bc9 254 Pfam PF00899 ThiF family 16 156 6.5E-35 T 12-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Alide_1639 3e0f9385c11493084154be5d632f6bc9 254 SUPERFAMILY SSF69572 8 253 3.66E-55 T 12-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 Alide_2108 5ca6e4038872497147c87ebc18e2d5f8 296 Gene3D G3DSA:3.40.50.720 2 168 5.3E-48 T 12-10-2018 Alide_2108 5ca6e4038872497147c87ebc18e2d5f8 296 SUPERFAMILY SSF48179 169 291 1.93E-37 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_2108 5ca6e4038872497147c87ebc18e2d5f8 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 7 164 2.0E-39 T 12-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Alide_2108 5ca6e4038872497147c87ebc18e2d5f8 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 289 2.7E-37 T 12-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Alide_2108 5ca6e4038872497147c87ebc18e2d5f8 296 SUPERFAMILY SSF51735 7 167 1.58E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2108 5ca6e4038872497147c87ebc18e2d5f8 296 Gene3D G3DSA:1.10.1040.10 169 293 6.6E-43 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_2108 5ca6e4038872497147c87ebc18e2d5f8 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 10 23 - T 12-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_2108 5ca6e4038872497147c87ebc18e2d5f8 296 PIRSF PIRSF000103 1 292 2.2E-67 T 12-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Alide_4377 f91629755064616bbf851198f402c25e 255 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 5 251 1.3E-74 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Alide_4377 f91629755064616bbf851198f402c25e 255 Gene3D G3DSA:3.40.50.150 1 190 3.5E-59 T 12-10-2018 Alide_4377 f91629755064616bbf851198f402c25e 255 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 3 253 53.336 T 12-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Alide_4377 f91629755064616bbf851198f402c25e 255 SUPERFAMILY SSF53335 3 253 3.31E-64 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_4377 f91629755064616bbf851198f402c25e 255 SMART SM00650 19 189 2.7E-72 T 12-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 Alide_4377 f91629755064616bbf851198f402c25e 255 Pfam PF00398 Ribosomal RNA adenine dimethylase 6 226 3.1E-55 T 12-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Alide_4377 f91629755064616bbf851198f402c25e 255 Gene3D G3DSA:1.10.8.100 192 255 1.6E-21 T 12-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 Alide_4377 f91629755064616bbf851198f402c25e 255 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 35 62 - T 12-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 Alide_0393 cc3c2661caec5b9a3a2e8f445d7e0b47 229 Pfam PF01738 Dienelactone hydrolase family 15 227 1.2E-48 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 Alide_0393 cc3c2661caec5b9a3a2e8f445d7e0b47 229 Gene3D G3DSA:3.40.50.1820 2 227 9.0E-53 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0393 cc3c2661caec5b9a3a2e8f445d7e0b47 229 SUPERFAMILY SSF53474 2 227 2.03E-46 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0911 418b70208038b0d71193b394d1a226da 290 SUPERFAMILY SSF52540 11 195 3.43E-27 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0911 418b70208038b0d71193b394d1a226da 290 Gene3D G3DSA:3.40.50.300 56 199 2.5E-10 T 12-10-2018 Alide_0911 418b70208038b0d71193b394d1a226da 290 Pfam PF05673 Protein of unknown function (DUF815) 35 287 3.4E-104 T 12-10-2018 IPR008533 Domain of unknown function DUF815 Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.4E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 1.4E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.4E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 1.4E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 1.4E-23 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 SUPERFAMILY SSF51735 1 242 2.82E-66 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 4.3E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 4.3E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 4.3E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 204 1.6E-4 T 12-10-2018 Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 Pfam PF00106 short chain dehydrogenase 9 203 1.3E-44 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2007 97a47e869dc71f4dc8495088e69f5ed3 302 Gene3D G3DSA:3.40.50.720 8 300 1.6E-76 T 12-10-2018 Alide_0298 56a186ef034794b2f2f6fbe78d2c42b5 68 Gene3D G3DSA:2.60.260.40 13 59 1.4E-10 T 12-10-2018 Alide_0298 56a186ef034794b2f2f6fbe78d2c42b5 68 Pfam PF10276 Zinc-finger domain 32 56 4.0E-10 T 12-10-2018 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3363 44142d359d810ab5ae99da498fa60266 318 Pfam PF02401 LytB protein 7 283 2.0E-94 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Alide_3363 44142d359d810ab5ae99da498fa60266 318 Gene3D G3DSA:3.40.1010.20 10 282 2.0E-114 T 12-10-2018 Alide_3363 44142d359d810ab5ae99da498fa60266 318 Gene3D G3DSA:3.40.50.11270 16 100 2.0E-114 T 12-10-2018 Alide_3363 44142d359d810ab5ae99da498fa60266 318 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 6 285 3.2E-102 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Alide_3363 44142d359d810ab5ae99da498fa60266 318 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 5 287 37.921 T 12-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Alide_3363 44142d359d810ab5ae99da498fa60266 318 Gene3D G3DSA:3.40.1010.20 101 197 2.0E-114 T 12-10-2018 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 SMART SM00316 622 692 1.7E-23 T 12-10-2018 IPR022967 RNA-binding domain, S1 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Pfam PF00575 S1 RNA binding domain 621 692 5.3E-16 T 12-10-2018 IPR003029 S1 domain GO:0003676 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Pfam PF01138 3' exoribonuclease family, domain 1 18 146 1.5E-18 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Pfam PF01138 3' exoribonuclease family, domain 1 326 458 2.9E-20 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Pfam PF03725 3' exoribonuclease family, domain 2 149 211 5.9E-8 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 SUPERFAMILY SSF54211 296 490 2.99E-47 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 SUPERFAMILY SSF54211 3 146 5.57E-50 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 SUPERFAMILY SSF54791 557 641 2.05E-22 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Pfam PF00013 KH domain 559 616 1.0E-11 T 12-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Gene3D G3DSA:3.30.230.70 235 551 5.1E-113 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 693 0.0 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 PIRSF PIRSF005499 3 725 5.8E-291 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 SUPERFAMILY SSF46915 241 323 1.15E-14 T 12-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 5 695 29.524 T 12-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 244 322 1.2E-14 T 12-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 SUPERFAMILY SSF50249 622 699 2.65E-20 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 SMART SM00322 554 619 3.3E-14 T 12-10-2018 IPR004087 K Homology domain GO:0003676 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 SUPERFAMILY SSF55666 455 562 4.35E-28 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 SUPERFAMILY SSF55666 147 237 1.82E-27 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Gene3D G3DSA:3.30.230.70 1 231 4.8E-78 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Gene3D G3DSA:3.30.1370.10 552 623 9.7E-21 T 12-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Alide_1042 164bdef7fbf6727cf23e70e62997ff74 731 Gene3D G3DSA:2.40.50.140 624 696 6.3E-27 T 12-10-2018 Alide_1769 0d89cf96dc9307e2465c9ec4e91d36b0 302 SUPERFAMILY SSF53850 92 294 1.17E-41 T 12-10-2018 Alide_1769 0d89cf96dc9307e2465c9ec4e91d36b0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.4E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1769 0d89cf96dc9307e2465c9ec4e91d36b0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.4E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1769 0d89cf96dc9307e2465c9ec4e91d36b0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.4E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1769 0d89cf96dc9307e2465c9ec4e91d36b0 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.2E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1769 0d89cf96dc9307e2465c9ec4e91d36b0 302 Pfam PF03466 LysR substrate binding domain 90 294 9.9E-42 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1769 0d89cf96dc9307e2465c9ec4e91d36b0 302 SUPERFAMILY SSF46785 3 113 2.9E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1769 0d89cf96dc9307e2465c9ec4e91d36b0 302 Gene3D G3DSA:1.10.10.10 3 93 4.9E-26 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1769 0d89cf96dc9307e2465c9ec4e91d36b0 302 Gene3D G3DSA:3.40.190.290 94 298 5.3E-40 T 12-10-2018 Alide_2619 590c6b9479f73f765a87426dcb49201f 200 SUPERFAMILY SSF52540 9 143 6.84E-9 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2619 590c6b9479f73f765a87426dcb49201f 200 Pfam PF13671 AAA domain 10 137 3.6E-8 T 12-10-2018 Alide_2619 590c6b9479f73f765a87426dcb49201f 200 Gene3D G3DSA:3.40.50.300 3 180 6.3E-24 T 12-10-2018 Alide_1747 da87e215764646f29af09c8fae534c44 693 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 8 688 25.67 T 12-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Alide_1747 da87e215764646f29af09c8fae534c44 693 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 12 689 3.6E-263 T 12-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Alide_1747 da87e215764646f29af09c8fae534c44 693 Pfam PF03030 Inorganic H+ pyrophosphatase 19 683 4.4E-269 T 12-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Alide_1747 da87e215764646f29af09c8fae534c44 693 PIRSF PIRSF001265 4 693 1.4E-270 T 12-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Alide_0014 000393ea21e2c37305573cf35edb1367 94 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 20 31 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_0014 000393ea21e2c37305573cf35edb1367 94 Gene3D G3DSA:3.30.70.20 4 41 1.1E-7 T 12-10-2018 Alide_0014 000393ea21e2c37305573cf35edb1367 94 SUPERFAMILY SSF54862 7 78 1.67E-18 T 12-10-2018 Alide_0014 000393ea21e2c37305573cf35edb1367 94 Gene3D G3DSA:3.30.70.20 42 94 4.2E-6 T 12-10-2018 Alide_0014 000393ea21e2c37305573cf35edb1367 94 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 58 69 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_0014 000393ea21e2c37305573cf35edb1367 94 Pfam PF14697 4Fe-4S dicluster domain 14 75 1.2E-10 T 12-10-2018 Alide_0323 ef9dde68b6acf9c2c3c9ad397314d0c5 103 ProDom PD468738 PHENOL HYDROXYLASE COMPONENT SUBUNIT PHENOLHYDROXYLASE MONOOXYGENASE TOMA0 P0 HYDROCARBONS IRON 19 63 2.0E-9 T 12-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 Alide_0323 ef9dde68b6acf9c2c3c9ad397314d0c5 103 Pfam PF06099 Phenol hydroxylase subunit 18 69 2.0E-22 T 12-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 4 160 33.937 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 SUPERFAMILY SSF52374 4 157 1.21E-43 T 12-10-2018 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 60 4.4E-18 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 Gene3D G3DSA:3.40.50.620 1 161 8.0E-56 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 Pfam PF01467 Cytidylyltransferase-like 7 135 5.5E-21 T 12-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 114 136 4.2E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 4 22 4.2E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 51 75 4.2E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 87 103 4.2E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 22 43 4.2E-47 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Alide_3447 9fc05ad433d9c3a23e2fd12100e7d669 162 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 158 3.0E-57 T 12-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Alide_1360 26421232770ebd49ca9b8254244a24cb 207 SUPERFAMILY SSF46785 130 205 2.4E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1360 26421232770ebd49ca9b8254244a24cb 207 SUPERFAMILY SSF51206 11 117 6.55E-8 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_1360 26421232770ebd49ca9b8254244a24cb 207 Gene3D G3DSA:1.10.10.10 130 204 4.0E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1360 26421232770ebd49ca9b8254244a24cb 207 Gene3D G3DSA:2.60.120.10 8 129 4.0E-5 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1360 26421232770ebd49ca9b8254244a24cb 207 SMART SM00419 149 197 1.4E-6 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_1360 26421232770ebd49ca9b8254244a24cb 207 Pfam PF13545 Crp-like helix-turn-helix domain 133 202 9.2E-13 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_2853 b3a02c6382dd3126d7d059f0366aee7f 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 375 2.0E-126 T 12-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Alide_2853 b3a02c6382dd3126d7d059f0366aee7f 383 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Alide_2853 b3a02c6382dd3126d7d059f0366aee7f 383 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 260 280 - T 12-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Alide_2853 b3a02c6382dd3126d7d059f0366aee7f 383 Gene3D G3DSA:3.40.50.1970 2 184 2.2E-56 T 12-10-2018 Alide_2853 b3a02c6382dd3126d7d059f0366aee7f 383 Gene3D G3DSA:1.20.1090.10 186 383 5.9E-74 T 12-10-2018 Alide_2853 b3a02c6382dd3126d7d059f0366aee7f 383 SUPERFAMILY SSF56796 4 381 3.4E-132 T 12-10-2018 Alide_4441 71ed40dd857aa0766c3771d57264f27f 109 Pfam PF17394 Uncharacterized KleE stable inheritance protein 1 109 3.5E-50 T 12-10-2018 IPR035362 Protein KleE Alide_4441 71ed40dd857aa0766c3771d57264f27f 109 ProDom PD030350 PLASMID KLEE KCRB3 STABLE INHERITANCE MEMBRANE TRANSMEMBRANE 1 109 6.0E-42 T 12-10-2018 IPR035362 Protein KleE Alide_0005 ef053eabafc316b14af4e3b7f558c9a0 397 Pfam PF02515 CoA-transferase family III 4 365 1.3E-117 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0005 ef053eabafc316b14af4e3b7f558c9a0 397 Gene3D G3DSA:3.30.1540.10 226 317 6.8E-128 T 12-10-2018 Alide_0005 ef053eabafc316b14af4e3b7f558c9a0 397 Gene3D G3DSA:3.40.50.10540 4 350 6.8E-128 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0005 ef053eabafc316b14af4e3b7f558c9a0 397 SUPERFAMILY SSF89796 3 390 8.5E-130 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2433 35de092e0f817b531038485465b19ef5 414 Gene3D G3DSA:3.30.9.10 134 362 3.5E-56 T 12-10-2018 Alide_2433 35de092e0f817b531038485465b19ef5 414 SUPERFAMILY SSF54373 270 360 2.75E-16 T 12-10-2018 Alide_2433 35de092e0f817b531038485465b19ef5 414 Pfam PF01266 FAD dependent oxidoreductase 2 398 1.5E-64 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_2433 35de092e0f817b531038485465b19ef5 414 Gene3D G3DSA:3.50.50.60 100 405 3.5E-56 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2433 35de092e0f817b531038485465b19ef5 414 Gene3D G3DSA:3.50.50.60 1 96 7.0E-13 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2433 35de092e0f817b531038485465b19ef5 414 SUPERFAMILY SSF51905 1 410 5.44E-48 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2244 ed35053c1462199e6a488ce7ee1a40d9 474 ProSitePatterns PS00218 Amino acid permeases signature. 51 81 - T 12-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 Alide_2244 ed35053c1462199e6a488ce7ee1a40d9 474 Pfam PF00324 Amino acid permease 26 461 3.9E-108 T 12-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 Alide_2244 ed35053c1462199e6a488ce7ee1a40d9 474 Gene3D G3DSA:1.20.1740.10 18 466 3.1E-57 T 12-10-2018 Alide_2244 ed35053c1462199e6a488ce7ee1a40d9 474 PIRSF PIRSF006060 6 462 2.9E-66 T 12-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 Alide_3037 64be7ff3c2be087edeeea85d92006ce6 424 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 19 410 4.9E-116 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Alide_3037 64be7ff3c2be087edeeea85d92006ce6 424 SUPERFAMILY SSF56014 307 394 4.45E-8 T 12-10-2018 Alide_3037 64be7ff3c2be087edeeea85d92006ce6 424 Gene3D G3DSA:3.20.20.20 17 304 2.5E-91 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_3037 64be7ff3c2be087edeeea85d92006ce6 424 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 19 413 28.369 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Alide_3037 64be7ff3c2be087edeeea85d92006ce6 424 PIRSF PIRSF004640 12 420 8.3E-125 T 12-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Alide_3037 64be7ff3c2be087edeeea85d92006ce6 424 Pfam PF04551 GcpE protein 32 411 3.4E-109 T 12-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Alide_3037 64be7ff3c2be087edeeea85d92006ce6 424 Gene3D G3DSA:3.30.413.10 305 422 3.5E-37 T 12-10-2018 Alide_3422 8472acd62c513996d52ef48a2f854478 580 SUPERFAMILY SSF56322 16 375 9.03E-99 T 12-10-2018 IPR005801 ADC synthase GO:0009058 Alide_3422 8472acd62c513996d52ef48a2f854478 580 PRINTS PR00095 Anthranilate synthase component I signature 307 321 6.8E-9 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_3422 8472acd62c513996d52ef48a2f854478 580 PRINTS PR00095 Anthranilate synthase component I signature 227 240 6.8E-9 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_3422 8472acd62c513996d52ef48a2f854478 580 PRINTS PR00095 Anthranilate synthase component I signature 213 226 6.8E-9 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_3422 8472acd62c513996d52ef48a2f854478 580 Pfam PF01063 Amino-transferase class IV 382 576 2.2E-28 T 12-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 Alide_3422 8472acd62c513996d52ef48a2f854478 580 Gene3D G3DSA:3.20.10.10 453 580 1.2E-30 T 12-10-2018 Alide_3422 8472acd62c513996d52ef48a2f854478 580 Gene3D G3DSA:3.30.470.10 371 451 5.5E-16 T 12-10-2018 Alide_3422 8472acd62c513996d52ef48a2f854478 580 SUPERFAMILY SSF56752 329 575 6.93E-34 T 12-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 Alide_3422 8472acd62c513996d52ef48a2f854478 580 Pfam PF00425 chorismate binding enzyme 113 369 2.8E-81 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Alide_3422 8472acd62c513996d52ef48a2f854478 580 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 57 372 1.4E-100 T 12-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 Alide_3422 8472acd62c513996d52ef48a2f854478 580 Gene3D G3DSA:3.60.120.10 85 370 3.5E-99 T 12-10-2018 IPR005801 ADC synthase GO:0009058 Alide_2109 929c8a5290a7e6b0cdb606586f33e7e9 337 Gene3D G3DSA:3.90.25.10 184 320 9.1E-106 T 12-10-2018 Alide_2109 929c8a5290a7e6b0cdb606586f33e7e9 337 Gene3D G3DSA:3.40.50.720 6 311 9.1E-106 T 12-10-2018 Alide_2109 929c8a5290a7e6b0cdb606586f33e7e9 337 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 214 1.6E-23 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Alide_2109 929c8a5290a7e6b0cdb606586f33e7e9 337 SUPERFAMILY SSF51735 1 325 9.85E-46 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4070 fdcd6c614e4e8c5013ff7f89a068a6c2 175 Pfam PF04608 Phosphatidylglycerophosphatase A 23 170 9.7E-48 T 12-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 Alide_4070 fdcd6c614e4e8c5013ff7f89a068a6c2 175 PIRSF PIRSF006162 13 175 1.5E-36 T 12-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Alide_4070 fdcd6c614e4e8c5013ff7f89a068a6c2 175 SUPERFAMILY SSF101307 17 172 6.28E-33 T 12-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 Alide_4052 d23cbc43d949798e8f228782740be982 586 SMART SM00283 263 510 4.2E-90 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_4052 d23cbc43d949798e8f228782740be982 586 Gene3D G3DSA:1.10.287.950 209 512 1.5E-89 T 12-10-2018 Alide_4052 d23cbc43d949798e8f228782740be982 586 SUPERFAMILY SSF58104 230 511 5.75E-73 T 12-10-2018 Alide_4052 d23cbc43d949798e8f228782740be982 586 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 1.5E-58 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4052 d23cbc43d949798e8f228782740be982 586 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 1.5E-58 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4052 d23cbc43d949798e8f228782740be982 586 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 284 313 1.5E-58 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4052 d23cbc43d949798e8f228782740be982 586 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 361 388 1.5E-58 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4052 d23cbc43d949798e8f228782740be982 586 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 438 467 1.5E-58 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4052 d23cbc43d949798e8f228782740be982 586 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 168 9.1E-15 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Alide_4052 d23cbc43d949798e8f228782740be982 586 SMART SM00304 210 262 1.0E-10 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4052 d23cbc43d949798e8f228782740be982 586 Pfam PF00672 HAMP domain 210 258 4.1E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4052 d23cbc43d949798e8f228782740be982 586 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 477 1.8E-53 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_0684 5b6c3fe3b4e8e2293167a6aa782d10ec 538 Gene3D G3DSA:3.40.50.12780 4 424 3.3E-82 T 12-10-2018 Alide_0684 5b6c3fe3b4e8e2293167a6aa782d10ec 538 Gene3D G3DSA:3.30.300.30 427 537 3.0E-20 T 12-10-2018 Alide_0684 5b6c3fe3b4e8e2293167a6aa782d10ec 538 SUPERFAMILY SSF56801 7 527 1.96E-108 T 12-10-2018 Alide_0684 5b6c3fe3b4e8e2293167a6aa782d10ec 538 Pfam PF00501 AMP-binding enzyme 11 431 1.2E-66 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0684 5b6c3fe3b4e8e2293167a6aa782d10ec 538 Pfam PF13193 AMP-binding enzyme C-terminal domain 440 509 7.0E-10 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_2581 04c2ba814df9f1f88561324ab6486ae1 334 SUPERFAMILY SSF55073 157 315 1.49E-41 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_2581 04c2ba814df9f1f88561324ab6486ae1 334 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 151 311 3.5E-39 T 12-10-2018 IPR000160 GGDEF domain Alide_2581 04c2ba814df9f1f88561324ab6486ae1 334 Pfam PF00990 Diguanylate cyclase, GGDEF domain 154 309 3.1E-36 T 12-10-2018 IPR000160 GGDEF domain Alide_2581 04c2ba814df9f1f88561324ab6486ae1 334 SMART SM00267 141 313 1.1E-47 T 12-10-2018 IPR000160 GGDEF domain Alide_2581 04c2ba814df9f1f88561324ab6486ae1 334 Gene3D G3DSA:3.30.70.270 141 316 2.4E-51 T 12-10-2018 Alide_1600 3d0e02db5e8af977ac9102dd66a13e07 327 Gene3D G3DSA:3.40.190.150 25 309 1.0E-95 T 12-10-2018 Alide_1600 3d0e02db5e8af977ac9102dd66a13e07 327 Gene3D G3DSA:3.40.190.10 122 244 1.0E-95 T 12-10-2018 Alide_1600 3d0e02db5e8af977ac9102dd66a13e07 327 PIRSF PIRSF017082 2 318 2.9E-67 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1600 3d0e02db5e8af977ac9102dd66a13e07 327 SUPERFAMILY SSF53850 108 280 3.62E-10 T 12-10-2018 Alide_1600 3d0e02db5e8af977ac9102dd66a13e07 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 313 3.8E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2753 b6c17f3e001635e6b07e1e40b2da35a3 160 SMART SM00530 99 154 9.2E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_2753 b6c17f3e001635e6b07e1e40b2da35a3 160 Gene3D G3DSA:1.10.260.40 93 156 1.2E-10 T 12-10-2018 Alide_2753 b6c17f3e001635e6b07e1e40b2da35a3 160 Pfam PF01381 Helix-turn-helix 102 151 1.8E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_2753 b6c17f3e001635e6b07e1e40b2da35a3 160 SUPERFAMILY SSF47413 97 151 1.61E-10 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_0078 e13b5edeb647a474f232dc6ccc82ebbc 140 Gene3D G3DSA:3.10.129.10 1 140 1.9E-55 T 12-10-2018 Alide_0078 e13b5edeb647a474f232dc6ccc82ebbc 140 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 135 4.1E-36 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_0078 e13b5edeb647a474f232dc6ccc82ebbc 140 Pfam PF03061 Thioesterase superfamily 51 128 1.4E-17 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_0078 e13b5edeb647a474f232dc6ccc82ebbc 140 SUPERFAMILY SSF54637 1 139 1.81E-32 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0588 780f576f1a1b3ffde0349988a30cd00d 387 Gene3D G3DSA:3.20.20.10 26 255 2.8E-116 T 12-10-2018 IPR029066 PLP-binding barrel Alide_0588 780f576f1a1b3ffde0349988a30cd00d 387 Gene3D G3DSA:2.40.37.20 17 383 2.8E-116 T 12-10-2018 Alide_0588 780f576f1a1b3ffde0349988a30cd00d 387 SUPERFAMILY SSF51419 24 270 3.18E-35 T 12-10-2018 IPR029066 PLP-binding barrel Alide_0588 780f576f1a1b3ffde0349988a30cd00d 387 Pfam PF01168 Alanine racemase, N-terminal domain 24 258 7.7E-28 T 12-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Alide_0588 780f576f1a1b3ffde0349988a30cd00d 387 Pfam PF14031 Putative serine dehydratase domain 275 364 6.1E-20 T 12-10-2018 IPR026956 D-serine dehydratase-like domain Alide_0588 780f576f1a1b3ffde0349988a30cd00d 387 SMART SM01119 275 366 3.3E-30 T 12-10-2018 IPR026956 D-serine dehydratase-like domain Alide_0753 93939ceab5d0d4663c46d3bcefec7fa5 320 Pfam PF01522 Polysaccharide deacetylase 67 269 4.5E-23 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Alide_0753 93939ceab5d0d4663c46d3bcefec7fa5 320 SUPERFAMILY SSF88713 35 291 1.65E-31 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Alide_0735 527d356d494394f353335c5cc6a7b28c 480 Gene3D G3DSA:2.60.120.10 362 468 6.9E-18 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_0735 527d356d494394f353335c5cc6a7b28c 480 Pfam PF00483 Nucleotidyl transferase 5 297 4.0E-63 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Alide_0735 527d356d494394f353335c5cc6a7b28c 480 Gene3D G3DSA:3.90.550.10 3 361 3.0E-114 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0735 527d356d494394f353335c5cc6a7b28c 480 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 3 480 2.5E-202 T 12-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Alide_0735 527d356d494394f353335c5cc6a7b28c 480 SUPERFAMILY SSF53448 1 291 2.94E-63 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0735 527d356d494394f353335c5cc6a7b28c 480 Pfam PF01050 Mannose-6-phosphate isomerase 326 476 1.9E-71 T 12-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 Alide_0735 527d356d494394f353335c5cc6a7b28c 480 SUPERFAMILY SSF51182 187 480 3.34E-84 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Pfam PF00623 RNA polymerase Rpb1, domain 2 390 483 9.1E-27 T 12-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Pfam PF00623 RNA polymerase Rpb1, domain 2 342 393 4.7E-8 T 12-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Gene3D G3DSA:1.10.150.390 1314 1375 9.9E-29 T 12-10-2018 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1375 18.63 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Gene3D G3DSA:1.10.274.100 488 639 4.1E-35 T 12-10-2018 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Pfam PF05000 RNA polymerase Rpb1, domain 4 673 762 3.8E-19 T 12-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Gene3D G3DSA:2.40.50.100 1150 1213 1.3E-63 T 12-10-2018 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Pfam PF04983 RNA polymerase Rpb1, domain 3 487 643 3.7E-22 T 12-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Gene3D G3DSA:1.10.1790.20 1134 1312 1.3E-63 T 12-10-2018 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 SUPERFAMILY SSF64484 17 1361 0.0 T 12-10-2018 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Gene3D G3DSA:1.10.40.90 372 414 6.9E-19 T 12-10-2018 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 SMART SM00663 233 512 3.0E-169 T 12-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 340 8.4E-83 T 12-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Pfam PF04998 RNA polymerase Rpb1, domain 5 765 1314 6.3E-75 T 12-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1365 0.0 T 12-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Gene3D G3DSA:2.40.50.100 1023 1125 1.5E-26 T 12-10-2018 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Gene3D G3DSA:2.40.50.100 947 1022 1.8E-27 T 12-10-2018 Alide_0463 862edc7accfdd4415b79bd44b48a1503 1409 Gene3D G3DSA:1.10.132.30 640 789 1.1E-65 T 12-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Alide_2014 84b26d7277b4e377bb521ac253a64524 378 SUPERFAMILY SSF51905 6 368 2.81E-38 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2014 84b26d7277b4e377bb521ac253a64524 378 Gene3D G3DSA:3.30.9.10 91 310 3.2E-71 T 12-10-2018 Alide_2014 84b26d7277b4e377bb521ac253a64524 378 Gene3D G3DSA:3.50.50.60 7 341 3.2E-71 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2014 84b26d7277b4e377bb521ac253a64524 378 SUPERFAMILY SSF54373 228 311 7.46E-11 T 12-10-2018 Alide_2014 84b26d7277b4e377bb521ac253a64524 378 Pfam PF01266 FAD dependent oxidoreductase 6 335 1.8E-46 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_1396 1ec4f5dda6b7c3b9f219b38c4c16c8f3 282 Pfam PF13371 Tetratricopeptide repeat 205 276 1.7E-19 T 12-10-2018 Alide_1396 1ec4f5dda6b7c3b9f219b38c4c16c8f3 282 Pfam PF13369 Transglutaminase-like superfamily 47 203 5.2E-48 T 12-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 Alide_0672 489f345958f6a8754c50431b19d81f41 296 PIRSF PIRSF000728 14 295 1.5E-101 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Alide_0672 489f345958f6a8754c50431b19d81f41 296 Hamap MF_00082 Acetylglutamate kinase [argB]. 28 288 49.396 T 12-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Alide_0672 489f345958f6a8754c50431b19d81f41 296 Gene3D G3DSA:3.40.1160.10 6 296 8.3E-97 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_0672 489f345958f6a8754c50431b19d81f41 296 TIGRFAM TIGR00761 argB: acetylglutamate kinase 30 270 8.8E-73 T 12-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Alide_0672 489f345958f6a8754c50431b19d81f41 296 SUPERFAMILY SSF53633 9 295 3.8E-89 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_0672 489f345958f6a8754c50431b19d81f41 296 PRINTS PR00474 Glutamate 5-kinase family signature 245 265 1.6E-6 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Alide_0672 489f345958f6a8754c50431b19d81f41 296 PRINTS PR00474 Glutamate 5-kinase family signature 195 222 1.6E-6 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Alide_0672 489f345958f6a8754c50431b19d81f41 296 Pfam PF00696 Amino acid kinase family 29 271 1.2E-44 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Alide_3207 88695ae685556a4662fa389e1fc105df 390 Pfam PF01070 FMN-dependent dehydrogenase 17 379 9.9E-134 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 Alide_3207 88695ae685556a4662fa389e1fc105df 390 SUPERFAMILY SSF51395 6 379 2.56E-105 T 12-10-2018 Alide_3207 88695ae685556a4662fa389e1fc105df 390 PIRSF PIRSF000138 2 383 8.9E-126 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Alide_3207 88695ae685556a4662fa389e1fc105df 390 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 277 283 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Alide_3207 88695ae685556a4662fa389e1fc105df 390 Gene3D G3DSA:3.20.20.70 5 386 2.4E-132 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 Gene3D G3DSA:3.30.930.10 1 205 3.0E-112 T 12-10-2018 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 3 288 1.5E-156 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 2 282 59.925 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 4 280 1.3E-150 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 Gene3D G3DSA:1.20.58.180 206 287 3.8E-34 T 12-10-2018 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 108 132 7.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 77 97 7.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 242 258 7.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 56 71 7.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 134 154 7.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 157 172 7.3E-68 T 12-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0632 1c6b7bf0e24d1cc8ebc4622996ffcaf6 312 SUPERFAMILY SSF55681 3 281 4.05E-134 T 12-10-2018 Alide_3222 2715e5e169e9c89e106e719953a17336 324 Gene3D G3DSA:3.40.190.150 29 314 2.6E-85 T 12-10-2018 Alide_3222 2715e5e169e9c89e106e719953a17336 324 SUPERFAMILY SSF53850 107 281 6.15E-5 T 12-10-2018 Alide_3222 2715e5e169e9c89e106e719953a17336 324 Gene3D G3DSA:3.40.190.10 125 249 2.6E-85 T 12-10-2018 Alide_3222 2715e5e169e9c89e106e719953a17336 324 PIRSF PIRSF017082 1 324 1.6E-54 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3222 2715e5e169e9c89e106e719953a17336 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 320 1.6E-53 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2653 ebdd62f6c1c3074e42f6918a05d3489b 212 SUPERFAMILY SSF51569 4 209 4.76E-69 T 12-10-2018 Alide_2653 ebdd62f6c1c3074e42f6918a05d3489b 212 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 12-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Alide_2653 ebdd62f6c1c3074e42f6918a05d3489b 212 Gene3D G3DSA:3.20.20.70 2 211 7.5E-75 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2653 ebdd62f6c1c3074e42f6918a05d3489b 212 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 12-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Alide_2653 ebdd62f6c1c3074e42f6918a05d3489b 212 Pfam PF01081 KDPG and KHG aldolase 11 203 3.3E-70 T 12-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Alide_2653 ebdd62f6c1c3074e42f6918a05d3489b 212 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 10 209 1.4E-75 T 12-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 SUPERFAMILY SSF53633 4 254 1.7E-74 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 Pfam PF00696 Amino acid kinase family 3 233 7.1E-53 T 12-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 66 415 1.9E-113 T 12-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 2 417 1.5E-124 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 SUPERFAMILY SSF55021 344 418 1.59E-23 T 12-10-2018 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 Gene3D G3DSA:3.30.70.260 274 352 7.7E-56 T 12-10-2018 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 Gene3D G3DSA:3.40.1160.10 1 267 5.3E-84 T 12-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 PIRSF PIRSF000726 57 423 9.9E-136 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 PIRSF PIRSF000726 1 66 1.3E-20 T 12-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 12-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 Gene3D G3DSA:3.30.70.260 268 417 7.7E-56 T 12-10-2018 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 Pfam PF01842 ACT domain 280 336 5.8E-9 T 12-10-2018 IPR002912 ACT domain Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 Pfam PF13840 ACT domain 354 413 1.6E-15 T 12-10-2018 IPR027795 CASTOR, ACT domain Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 SUPERFAMILY SSF55021 261 339 2.62E-17 T 12-10-2018 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 3.3E-5 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Alide_2123 438e46878e5e32a64dd2bf2b54e2db86 423 PRINTS PR00474 Glutamate 5-kinase family signature 156 183 3.3E-5 T 12-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Alide_4446 b9a4c905073232a34feb6d48b726561d 142 Pfam PF03230 Antirestriction protein 48 142 1.1E-32 T 12-10-2018 IPR004914 Antirestriction protein Alide_4446 b9a4c905073232a34feb6d48b726561d 142 Gene3D G3DSA:1.10.472.120 1 142 1.3E-57 T 12-10-2018 Alide_4446 b9a4c905073232a34feb6d48b726561d 142 ProDom PD012854 PLASMID KLCA ANTIRESTRICTION YFJX YCIB ARDB STABLE YFEB Z1216 C0275 45 142 5.0E-43 T 12-10-2018 IPR004914 Antirestriction protein Alide_1347 e54b3d01c21d90796c59ac2ebc65229a 399 Gene3D G3DSA:3.40.50.2300 29 330 2.0E-108 T 12-10-2018 Alide_1347 e54b3d01c21d90796c59ac2ebc65229a 399 Pfam PF13458 Periplasmic binding protein 28 363 8.2E-83 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_1347 e54b3d01c21d90796c59ac2ebc65229a 399 SUPERFAMILY SSF53822 29 398 7.06E-90 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_1347 e54b3d01c21d90796c59ac2ebc65229a 399 Gene3D G3DSA:3.40.50.2300 148 279 2.0E-108 T 12-10-2018 Alide_2702 8d9f1bf829e32b08bb1a2608720999a2 427 SUPERFAMILY SSF56059 79 412 6.47E-10 T 12-10-2018 Alide_0879 58d4a37b146aa3ed38da622e3de3f682 222 SUPERFAMILY SSF52317 5 220 3.82E-52 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_0879 58d4a37b146aa3ed38da622e3de3f682 222 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 7 220 34.62 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Alide_0879 58d4a37b146aa3ed38da622e3de3f682 222 Pfam PF00117 Glutamine amidotransferase class-I 48 217 4.6E-14 T 12-10-2018 IPR017926 Glutamine amidotransferase Alide_0879 58d4a37b146aa3ed38da622e3de3f682 222 PIRSF PIRSF000495 6 222 6.6E-65 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Alide_0879 58d4a37b146aa3ed38da622e3de3f682 222 Gene3D G3DSA:3.40.50.880 3 221 1.4E-69 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_0879 58d4a37b146aa3ed38da622e3de3f682 222 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 8 219 6.0E-59 T 12-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 35 435 3.6E-154 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 Pfam PF04052 TolB amino-terminal domain 41 140 1.8E-29 T 12-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 SUPERFAMILY SSF69304 165 436 3.14E-60 T 12-10-2018 Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 Gene3D G3DSA:2.120.10.30 176 440 9.7E-90 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 SUPERFAMILY SSF52964 45 172 9.15E-36 T 12-10-2018 Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 Gene3D G3DSA:3.40.50.10070 36 175 1.5E-37 T 12-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 21 434 47.881 T 12-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 Pfam PF07676 WD40-like Beta Propeller Repeat 289 324 1.6E-13 T 12-10-2018 IPR011659 WD40-like Beta Propeller Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 Pfam PF07676 WD40-like Beta Propeller Repeat 333 366 2.5E-8 T 12-10-2018 IPR011659 WD40-like Beta Propeller Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 Pfam PF07676 WD40-like Beta Propeller Repeat 378 405 0.13 T 12-10-2018 IPR011659 WD40-like Beta Propeller Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 Pfam PF07676 WD40-like Beta Propeller Repeat 246 280 8.0E-9 T 12-10-2018 IPR011659 WD40-like Beta Propeller Alide_1636 c5c1d75332d6fc230b1a66c4920631c8 440 Pfam PF07676 WD40-like Beta Propeller Repeat 204 236 3.0E-4 T 12-10-2018 IPR011659 WD40-like Beta Propeller Alide_1471 d79b82123f47acbae4a504df68229355 453 Gene3D G3DSA:2.30.42.10 223 312 1.8E-13 T 12-10-2018 Alide_1471 d79b82123f47acbae4a504df68229355 453 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 452 1.7E-97 T 12-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 Alide_1471 d79b82123f47acbae4a504df68229355 453 SUPERFAMILY SSF50156 200 295 1.18E-11 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 Alide_1471 d79b82123f47acbae4a504df68229355 453 SMART SM00228 212 282 0.0051 T 12-10-2018 IPR001478 PDZ domain GO:0005515 Alide_1471 d79b82123f47acbae4a504df68229355 453 Pfam PF02163 Peptidase family M50 7 438 6.7E-72 T 12-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 Alide_1430 4762c274b6157d32770e85b7a6861e07 92 Gene3D G3DSA:1.10.3230.30 1 92 8.4E-21 T 12-10-2018 Alide_1430 4762c274b6157d32770e85b7a6861e07 92 Pfam PF05135 Phage gp6-like head-tail connector protein 1 89 1.9E-15 T 12-10-2018 IPR021146 Phage gp6-like head-tail connector protein Alide_1430 4762c274b6157d32770e85b7a6861e07 92 TIGRFAM TIGR01560 put_DNA_pack: uncharacterized phage protein (possible DNA packaging) 3 76 2.0E-10 T 12-10-2018 IPR006450 Phage protein of unkonwn function Alide_2864 aa6f492737ce49a38b8c76915acb8ca1 155 Pfam PF13490 Putative zinc-finger 7 35 8.0E-7 T 12-10-2018 IPR027383 Putative zinc-finger Alide_2864 aa6f492737ce49a38b8c76915acb8ca1 155 Gene3D G3DSA:1.10.10.1320 2 98 8.3E-8 T 12-10-2018 Alide_1421 2cd63002c0d467d39458d386070e2c51 398 Gene3D G3DSA:2.40.110.10 134 243 6.8E-38 T 12-10-2018 Alide_1421 2cd63002c0d467d39458d386070e2c51 398 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 349 368 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_1421 2cd63002c0d467d39458d386070e2c51 398 Gene3D G3DSA:1.20.140.10 245 398 4.7E-41 T 12-10-2018 Alide_1421 2cd63002c0d467d39458d386070e2c51 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 244 389 5.8E-28 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_1421 2cd63002c0d467d39458d386070e2c51 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 135 231 3.5E-22 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_1421 2cd63002c0d467d39458d386070e2c51 398 SUPERFAMILY SSF47203 246 393 2.74E-41 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_1421 2cd63002c0d467d39458d386070e2c51 398 Gene3D G3DSA:1.10.540.10 1 133 1.7E-43 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_1421 2cd63002c0d467d39458d386070e2c51 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 131 4.5E-35 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_1421 2cd63002c0d467d39458d386070e2c51 398 SUPERFAMILY SSF56645 6 242 1.14E-78 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_4236 bb5eba6100e09a4dbfadb0881c17a7d3 367 SMART SM00925 129 268 1.6E-66 T 12-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 Alide_4236 bb5eba6100e09a4dbfadb0881c17a7d3 367 Pfam PF03562 MltA specific insert domain 59 268 4.7E-54 T 12-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 Alide_4236 bb5eba6100e09a4dbfadb0881c17a7d3 367 Pfam PF06725 3D domain 293 364 1.0E-21 T 12-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 Alide_4236 bb5eba6100e09a4dbfadb0881c17a7d3 367 PIRSF PIRSF019422 1 367 4.0E-88 T 12-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A Alide_4236 bb5eba6100e09a4dbfadb0881c17a7d3 367 SUPERFAMILY SSF50685 41 367 1.12E-104 T 12-10-2018 IPR036908 RlpA-like domain superfamily Alide_4236 bb5eba6100e09a4dbfadb0881c17a7d3 367 Gene3D G3DSA:2.40.40.10 25 144 9.2E-18 T 12-10-2018 IPR036908 RlpA-like domain superfamily Alide_4236 bb5eba6100e09a4dbfadb0881c17a7d3 367 Gene3D G3DSA:2.40.40.10 277 367 2.1E-35 T 12-10-2018 IPR036908 RlpA-like domain superfamily Alide_4236 bb5eba6100e09a4dbfadb0881c17a7d3 367 Gene3D G3DSA:2.40.240.50 152 269 3.7E-38 T 12-10-2018 Alide_3709 e7124026341fcb20fd4241d8abbf89ff 392 ProSitePatterns PS01348 MraY family signature 2. 215 226 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3709 e7124026341fcb20fd4241d8abbf89ff 392 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 41 392 8.1E-122 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3709 e7124026341fcb20fd4241d8abbf89ff 392 Pfam PF00953 Glycosyl transferase family 4 102 310 1.6E-34 T 12-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Alide_3709 e7124026341fcb20fd4241d8abbf89ff 392 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 28 390 23.241 T 12-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3709 e7124026341fcb20fd4241d8abbf89ff 392 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 71 83 9.0E-6 T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3709 e7124026341fcb20fd4241d8abbf89ff 392 ProSitePatterns PS01347 MraY family signature 1. 71 83 - T 12-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_0623 6d8872cb555f4094142e237c49ffd7e2 295 Pfam PF00571 CBS domain 137 186 1.4E-4 T 12-10-2018 IPR000644 CBS domain Alide_0623 6d8872cb555f4094142e237c49ffd7e2 295 Pfam PF00571 CBS domain 77 124 3.4E-6 T 12-10-2018 IPR000644 CBS domain Alide_0623 6d8872cb555f4094142e237c49ffd7e2 295 SUPERFAMILY SSF56176 201 289 6.27E-19 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_0623 6d8872cb555f4094142e237c49ffd7e2 295 Gene3D G3DSA:3.30.465.10 193 283 7.3E-22 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Alide_0623 6d8872cb555f4094142e237c49ffd7e2 295 SMART SM01091 203 285 7.3E-26 T 12-10-2018 IPR005170 Transporter-associated domain Alide_0623 6d8872cb555f4094142e237c49ffd7e2 295 Gene3D G3DSA:3.10.580.10 50 192 3.6E-50 T 12-10-2018 Alide_0623 6d8872cb555f4094142e237c49ffd7e2 295 Pfam PF03471 Transporter associated domain 206 283 6.8E-17 T 12-10-2018 IPR005170 Transporter-associated domain Alide_0623 6d8872cb555f4094142e237c49ffd7e2 295 SUPERFAMILY SSF54631 58 197 1.39E-30 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 Pfam PF00702 haloacid dehalogenase-like hydrolase 358 572 2.7E-35 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 Gene3D G3DSA:3.40.50.1000 342 611 1.4E-74 T 12-10-2018 IPR023214 HAD superfamily Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 SUPERFAMILY SSF56784 359 659 1.56E-51 T 12-10-2018 IPR036412 HAD-like superfamily Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 132 392 4.1E-34 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 458 644 1.9E-33 T 12-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 363 369 - T 12-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 Gene3D G3DSA:2.70.150.20 153 265 8.5E-31 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 SUPERFAMILY SSF81653 165 260 1.7E-19 T 12-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 PRINTS PR00941 Cadmium-transporting ATPase signature 144 164 5.6E-6 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 PRINTS PR00941 Cadmium-transporting ATPase signature 90 102 5.6E-6 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 PRINTS PR00941 Cadmium-transporting ATPase signature 226 242 5.6E-6 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 109 663 2.2E-129 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 Pfam PF00122 E1-E2 ATPase 160 341 9.3E-48 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 361 375 1.4E-18 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 558 577 1.4E-18 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 505 515 1.4E-18 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 483 494 1.4E-18 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 210 224 1.4E-18 T 12-10-2018 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 109 662 3.4E-163 T 12-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 SUPERFAMILY SSF81665 111 352 4.97E-7 T 12-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Alide_1455 ad0c915aa95176ae6bd41846e4b0a341 671 Gene3D G3DSA:3.40.1110.10 372 490 1.4E-74 T 12-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Alide_4279 ce52a0c9bea11dc67c8b29dbe0440408 274 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 2 271 36.747 T 12-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_4279 ce52a0c9bea11dc67c8b29dbe0440408 274 Gene3D G3DSA:3.20.20.70 1 273 2.1E-99 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_4279 ce52a0c9bea11dc67c8b29dbe0440408 274 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 3 258 2.1E-75 T 12-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_4279 ce52a0c9bea11dc67c8b29dbe0440408 274 SMART SM00934 17 258 2.0E-45 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_4279 ce52a0c9bea11dc67c8b29dbe0440408 274 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 90 103 - T 12-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_4279 ce52a0c9bea11dc67c8b29dbe0440408 274 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 17 249 1.9E-30 T 12-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_4279 ce52a0c9bea11dc67c8b29dbe0440408 274 SUPERFAMILY SSF51366 3 264 3.93E-73 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Alide_1955 a2711390d73cb1987d60dab7757b2261 340 Gene3D G3DSA:1.10.150.130 90 196 2.6E-19 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_1955 a2711390d73cb1987d60dab7757b2261 340 Gene3D G3DSA:3.30.160.390 1 89 6.8E-22 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Alide_1955 a2711390d73cb1987d60dab7757b2261 340 Pfam PF13356 Arm DNA-binding domain 2 89 2.5E-15 T 12-10-2018 IPR025166 Integrase, DNA-binding domain Alide_1955 a2711390d73cb1987d60dab7757b2261 340 SUPERFAMILY SSF56349 99 282 8.75E-36 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_1955 a2711390d73cb1987d60dab7757b2261 340 Pfam PF00589 Phage integrase family 205 280 3.3E-9 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1955 a2711390d73cb1987d60dab7757b2261 340 Gene3D G3DSA:1.10.443.10 199 283 7.9E-9 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_1955 a2711390d73cb1987d60dab7757b2261 340 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 99 150 6.3E-6 T 12-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Alide_1562 0a958f8caeab2a77144853bb57d77253 231 Gene3D G3DSA:3.40.50.300 1 231 4.0E-56 T 12-10-2018 Alide_1562 0a958f8caeab2a77144853bb57d77253 231 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1562 0a958f8caeab2a77144853bb57d77253 231 SMART SM00382 26 208 6.8E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1562 0a958f8caeab2a77144853bb57d77253 231 Pfam PF00005 ABC transporter 17 159 3.0E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1562 0a958f8caeab2a77144853bb57d77253 231 SUPERFAMILY SSF52540 2 223 2.77E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 618 742 1.0E-45 T 12-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 Gene3D G3DSA:3.40.640.10 149 456 3.8E-93 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 392 406 - T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 PIRSF PIRSF009393 1 760 3.3E-271 T 12-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 SUPERFAMILY SSF55904 613 759 1.31E-42 T 12-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 Gene3D G3DSA:3.90.100.10 638 758 4.4E-36 T 12-10-2018 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 149 591 3.2E-146 T 12-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 Gene3D G3DSA:3.90.1150.10 459 637 1.2E-65 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 Gene3D G3DSA:3.40.50.2300 5 147 5.5E-19 T 12-10-2018 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 20 143 4.7E-37 T 12-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 Alide_2687 8a2590abe3d753124bed6831a56bcc7f 786 SUPERFAMILY SSF53383 149 610 6.34E-112 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3051 732a51f03240f634647bd6ae7a6bac1c 398 Gene3D G3DSA:3.20.20.70 18 398 1.2E-119 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3051 732a51f03240f634647bd6ae7a6bac1c 398 Pfam PF01070 FMN-dependent dehydrogenase 29 394 7.1E-122 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 Alide_3051 732a51f03240f634647bd6ae7a6bac1c 398 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 291 297 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Alide_3051 732a51f03240f634647bd6ae7a6bac1c 398 SUPERFAMILY SSF51395 18 394 1.53E-89 T 12-10-2018 Alide_3051 732a51f03240f634647bd6ae7a6bac1c 398 PIRSF PIRSF000138 1 398 1.2E-126 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 7 180 5.9E-30 T 12-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 PIRSF PIRSF000124 6 422 1.8E-49 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 SUPERFAMILY SSF51735 7 191 1.4E-42 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0758 015147644f603d1caba46bda3b95f0b9 425 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 416 1.4E-18 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 7 409 1.2E-113 T 12-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 SMART SM00984 317 418 1.3E-32 T 12-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 Gene3D G3DSA:3.40.50.720 200 422 3.4E-53 T 12-10-2018 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 SUPERFAMILY SSF48179 201 292 5.1E-25 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 SUPERFAMILY SSF52413 300 416 4.84E-25 T 12-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 202 290 7.8E-24 T 12-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 Gene3D G3DSA:3.40.50.720 1 198 3.3E-55 T 12-10-2018 Alide_0758 015147644f603d1caba46bda3b95f0b9 425 PIRSF PIRSF500136 1 425 3.2E-146 T 12-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 Alide_1950 572f630584153f26fe705ba078cc8fb9 146 SUPERFAMILY SSF55961 1 146 1.79E-36 T 12-10-2018 Alide_1950 572f630584153f26fe705ba078cc8fb9 146 Gene3D G3DSA:3.30.530.20 1 146 5.1E-41 T 12-10-2018 IPR023393 START-like domain superfamily Alide_1950 572f630584153f26fe705ba078cc8fb9 146 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 12 137 5.6E-32 T 12-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 Alide_4057 e5012925e672010801396a60a2c0069b 135 SUPERFAMILY SSF110069 5 118 1.18E-45 T 12-10-2018 IPR036767 ApaG domain superfamily Alide_4057 e5012925e672010801396a60a2c0069b 135 Pfam PF04379 ApaG domain 16 101 2.8E-35 T 12-10-2018 IPR007474 ApaG domain Alide_4057 e5012925e672010801396a60a2c0069b 135 Hamap MF_00791 Protein ApaG [apaG]. 1 135 29.694 T 12-10-2018 IPR023065 Uncharacterised protein family ApaG Alide_4057 e5012925e672010801396a60a2c0069b 135 Gene3D G3DSA:2.60.40.1470 1 125 8.3E-46 T 12-10-2018 IPR036767 ApaG domain superfamily Alide_3779 df0651485b0fa848b0de69b412ee88f4 349 Pfam PF01979 Amidohydrolase family 17 315 1.2E-17 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_3779 df0651485b0fa848b0de69b412ee88f4 349 ProSitePatterns PS00483 Dihydroorotase signature 2. 250 261 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_3779 df0651485b0fa848b0de69b412ee88f4 349 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 10 347 1.1E-137 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_3779 df0651485b0fa848b0de69b412ee88f4 349 Hamap MF_00219 Dihydroorotase [pyrC]. 8 348 46.016 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_3779 df0651485b0fa848b0de69b412ee88f4 349 Gene3D G3DSA:3.20.20.140 8 348 7.2E-106 T 12-10-2018 Alide_3779 df0651485b0fa848b0de69b412ee88f4 349 PIRSF PIRSF001237 6 349 7.8E-138 T 12-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_3779 df0651485b0fa848b0de69b412ee88f4 349 SUPERFAMILY SSF51556 8 347 1.88E-144 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_3779 df0651485b0fa848b0de69b412ee88f4 349 ProSitePatterns PS00482 Dihydroorotase signature 1. 17 25 - T 12-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_0542 e8a24d6154208cb682d79c64daaf1cca 437 Gene3D G3DSA:3.40.50.2300 150 290 6.7E-76 T 12-10-2018 Alide_0542 e8a24d6154208cb682d79c64daaf1cca 437 Gene3D G3DSA:3.40.50.2300 40 360 6.7E-76 T 12-10-2018 Alide_0542 e8a24d6154208cb682d79c64daaf1cca 437 Pfam PF13458 Periplasmic binding protein 34 398 4.4E-80 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_0542 e8a24d6154208cb682d79c64daaf1cca 437 SUPERFAMILY SSF53822 36 404 1.82E-49 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2036 3b13719b5eb4fa36402a99fc3bc36402 231 Pfam PF02230 Phospholipase/Carboxylesterase 28 222 6.8E-18 T 12-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 Alide_2036 3b13719b5eb4fa36402a99fc3bc36402 231 SUPERFAMILY SSF53474 29 225 1.33E-38 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2036 3b13719b5eb4fa36402a99fc3bc36402 231 Gene3D G3DSA:3.40.50.1820 23 226 1.5E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2942 daaebbbdd13651dc8c086d02246ae22e 264 Gene3D G3DSA:1.10.10.10 6 84 2.1E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2942 daaebbbdd13651dc8c086d02246ae22e 264 SUPERFAMILY SSF46785 15 85 1.04E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2942 daaebbbdd13651dc8c086d02246ae22e 264 SMART SM00346 13 103 1.9E-17 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2942 daaebbbdd13651dc8c086d02246ae22e 264 Pfam PF09339 IclR helix-turn-helix domain 15 65 1.3E-16 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2942 daaebbbdd13651dc8c086d02246ae22e 264 Pfam PF01614 Bacterial transcriptional regulator 133 254 1.8E-8 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_2942 daaebbbdd13651dc8c086d02246ae22e 264 SUPERFAMILY SSF55781 80 258 6.02E-34 T 12-10-2018 Alide_2942 daaebbbdd13651dc8c086d02246ae22e 264 Gene3D G3DSA:3.30.450.40 86 256 2.4E-29 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_2992 f851a4758be2ca84d297e9c25b2591c2 292 TIGRFAM TIGR03464 HpnC: squalene synthase HpnC 19 290 6.4E-93 T 12-10-2018 IPR017827 Hydroxysqualene synthase HpnC MetaCyc: PWY-7072 Alide_2992 f851a4758be2ca84d297e9c25b2591c2 292 SUPERFAMILY SSF48576 20 292 2.73E-60 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily Alide_2992 f851a4758be2ca84d297e9c25b2591c2 292 Gene3D G3DSA:1.10.600.10 8 268 2.2E-69 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily Alide_2992 f851a4758be2ca84d297e9c25b2591c2 292 Pfam PF00494 Squalene/phytoene synthase 21 277 3.8E-50 T 12-10-2018 Alide_3967 5c8b0a9bcac3cb3cc9b9577b5183398c 121 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 3 121 1.8E-34 T 12-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3967 5c8b0a9bcac3cb3cc9b9577b5183398c 121 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 121 24.594 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_3967 5c8b0a9bcac3cb3cc9b9577b5183398c 121 SUPERFAMILY SSF53137 4 119 4.8E-46 T 12-10-2018 Alide_3967 5c8b0a9bcac3cb3cc9b9577b5183398c 121 Gene3D G3DSA:3.30.420.100 2 121 9.4E-38 T 12-10-2018 Alide_3967 5c8b0a9bcac3cb3cc9b9577b5183398c 121 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 121 3.1E-32 T 12-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_4287 50aeb4c9da332abbdb99e2c857c81eac 282 Gene3D G3DSA:3.30.450.40 95 265 2.0E-37 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_4287 50aeb4c9da332abbdb99e2c857c81eac 282 SUPERFAMILY SSF46785 28 96 8.17E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4287 50aeb4c9da332abbdb99e2c857c81eac 282 Pfam PF01614 Bacterial transcriptional regulator 144 266 4.6E-19 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_4287 50aeb4c9da332abbdb99e2c857c81eac 282 Gene3D G3DSA:1.10.10.10 23 94 2.9E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4287 50aeb4c9da332abbdb99e2c857c81eac 282 Pfam PF09339 IclR helix-turn-helix domain 28 78 2.7E-10 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_4287 50aeb4c9da332abbdb99e2c857c81eac 282 SUPERFAMILY SSF55781 97 269 2.94E-35 T 12-10-2018 Alide_4287 50aeb4c9da332abbdb99e2c857c81eac 282 SMART SM00346 26 114 2.2E-7 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2554 1a9a15b4b464fafb0a1044a6aacde68f 304 Pfam PF03466 LysR substrate binding domain 89 287 1.9E-32 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2554 1a9a15b4b464fafb0a1044a6aacde68f 304 Gene3D G3DSA:1.10.10.10 2 87 7.9E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2554 1a9a15b4b464fafb0a1044a6aacde68f 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.6E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2554 1a9a15b4b464fafb0a1044a6aacde68f 304 SUPERFAMILY SSF46785 1 113 2.5E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2554 1a9a15b4b464fafb0a1044a6aacde68f 304 Gene3D G3DSA:3.40.190.290 92 287 5.6E-33 T 12-10-2018 Alide_2554 1a9a15b4b464fafb0a1044a6aacde68f 304 SUPERFAMILY SSF53850 90 290 3.08E-33 T 12-10-2018 Alide_2758 1f11da314908fca98a3fb20985a8d7c5 318 SUPERFAMILY SSF46785 23 132 5.99E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2758 1f11da314908fca98a3fb20985a8d7c5 318 Gene3D G3DSA:3.40.190.10 111 310 1.7E-63 T 12-10-2018 Alide_2758 1f11da314908fca98a3fb20985a8d7c5 318 Gene3D G3DSA:3.40.190.10 183 284 1.7E-63 T 12-10-2018 Alide_2758 1f11da314908fca98a3fb20985a8d7c5 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 83 7.1E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2758 1f11da314908fca98a3fb20985a8d7c5 318 SUPERFAMILY SSF53850 109 315 5.79E-43 T 12-10-2018 Alide_2758 1f11da314908fca98a3fb20985a8d7c5 318 Pfam PF03466 LysR substrate binding domain 108 312 1.7E-41 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2758 1f11da314908fca98a3fb20985a8d7c5 318 Gene3D G3DSA:1.10.10.10 23 110 1.2E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0267 b2aceb2d2c407f074731c7f65f1d4150 243 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 24 226 2.3E-41 T 12-10-2018 IPR010239 Conserved hypothetical protein CHP02001 Alide_0267 b2aceb2d2c407f074731c7f65f1d4150 243 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 9 242 7.0E-39 T 12-10-2018 IPR010239 Conserved hypothetical protein CHP02001 Alide_2722 50021547e6cfc2ff3313f91b337afafa 288 Gene3D G3DSA:3.40.50.300 1 270 2.6E-50 T 12-10-2018 Alide_2722 50021547e6cfc2ff3313f91b337afafa 288 SUPERFAMILY SSF52540 1 262 1.1E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2722 50021547e6cfc2ff3313f91b337afafa 288 Pfam PF13614 AAA domain 1 158 7.8E-28 T 12-10-2018 IPR025669 AAA domain Alide_1204 1eba7e40898f407c598879de52ab7be6 190 Gene3D G3DSA:2.40.30.60 8 111 1.3E-29 T 12-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 Alide_1204 1eba7e40898f407c598879de52ab7be6 190 SUPERFAMILY SSF50346 117 190 3.14E-18 T 12-10-2018 IPR011033 PRC-barrel-like superfamily Alide_1204 1eba7e40898f407c598879de52ab7be6 190 Pfam PF01782 RimM N-terminal domain 18 107 6.2E-26 T 12-10-2018 IPR002676 RimM, N-terminal GO:0006364 Alide_1204 1eba7e40898f407c598879de52ab7be6 190 SUPERFAMILY SSF50447 15 110 1.41E-19 T 12-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Alide_1204 1eba7e40898f407c598879de52ab7be6 190 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 17 189 1.8E-44 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Alide_1204 1eba7e40898f407c598879de52ab7be6 190 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 16 190 24.348 T 12-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Alide_1204 1eba7e40898f407c598879de52ab7be6 190 Gene3D G3DSA:2.30.30.240 112 190 1.2E-26 T 12-10-2018 Alide_1204 1eba7e40898f407c598879de52ab7be6 190 Pfam PF05239 PRC-barrel domain 115 185 3.3E-8 T 12-10-2018 IPR027275 PRC-barrel domain Alide_0806 7c304cd6ae07d9d235dfcf0e1456f172 205 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 46 203 1.2E-38 T 12-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 Alide_0806 7c304cd6ae07d9d235dfcf0e1456f172 205 SUPERFAMILY SSF47240 45 178 8.12E-15 T 12-10-2018 IPR009078 Ferritin-like superfamily Alide_0806 7c304cd6ae07d9d235dfcf0e1456f172 205 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 5 205 29.432 T 12-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 Alide_0806 7c304cd6ae07d9d235dfcf0e1456f172 205 Gene3D G3DSA:1.20.1260.10 45 194 2.6E-7 T 12-10-2018 IPR012347 Ferritin-like Alide_1060 0c4bd78c5609b86070538c4913c76a96 105 Pfam PF10993 Protein of unknown function (DUF2818) 6 98 1.3E-36 T 12-10-2018 IPR016768 Uncharacterised conserved protein UCP019883, membrane Alide_1060 0c4bd78c5609b86070538c4913c76a96 105 PIRSF PIRSF019883 1 102 1.0E-32 T 12-10-2018 IPR016768 Uncharacterised conserved protein UCP019883, membrane Alide_1162 5bd5096a74aa375e7128376363d7e3c4 355 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 50 273 2.0E-18 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Alide_1162 5bd5096a74aa375e7128376363d7e3c4 355 Gene3D G3DSA:3.40.190.170 38 342 2.6E-50 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 Pfam PF01493 GXGXG motif 1304 1486 1.1E-77 T 12-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 Pfam PF00310 Glutamine amidotransferases class-II 25 448 1.5E-183 T 12-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 Gene3D G3DSA:3.20.20.70 464 808 4.2E-121 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 SUPERFAMILY SSF56235 25 450 1.64E-150 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 Gene3D G3DSA:2.160.20.60 1274 1561 8.5E-110 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 Gene3D G3DSA:3.20.20.70 809 1273 3.3E-205 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 Pfam PF01645 Conserved region in glutamate synthase 825 1222 3.3E-152 T 12-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 Pfam PF04898 Glutamate synthase central domain 478 764 6.6E-111 T 12-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 SUPERFAMILY SSF69336 1271 1549 2.62E-90 T 12-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 SUPERFAMILY SSF51395 474 1268 4.03E-263 T 12-10-2018 Alide_0854 1095ddd00b2411a5f4e45458ad0c3101 1577 Gene3D G3DSA:3.60.20.10 25 460 1.1E-178 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_2858 c72ba2c1065d61b137a8303e4c9fdea9 104 Pfam PF01322 Cytochrome C' 48 93 8.0E-8 T 12-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 Alide_2858 c72ba2c1065d61b137a8303e4c9fdea9 104 SUPERFAMILY SSF47175 1 94 1.4E-17 T 12-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 Alide_2858 c72ba2c1065d61b137a8303e4c9fdea9 104 Gene3D G3DSA:1.20.120.10 2 95 1.9E-12 T 12-10-2018 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 SUPERFAMILY SSF51230 598 670 1.15E-21 T 12-10-2018 IPR011053 Single hybrid motif Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 Gene3D G3DSA:3.30.470.130 1 462 1.9E-198 T 12-10-2018 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 Gene3D G3DSA:2.40.50.100 606 671 1.8E-24 T 12-10-2018 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 331 1.7E-74 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 SUPERFAMILY SSF51246 339 457 2.09E-37 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 SUPERFAMILY SSF56059 83 356 3.18E-65 T 12-10-2018 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 627 644 - T 12-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 SUPERFAMILY SSF52440 1 113 1.08E-47 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 Pfam PF02785 Biotin carboxylase C-terminal domain 344 455 2.8E-37 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 SMART SM00878 344 455 2.7E-54 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 7.7E-44 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 294 301 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_3797 e545e14a913b9d07e5ebe2fea8bb3785 673 Pfam PF00364 Biotin-requiring enzyme 605 670 3.3E-18 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_1910 a7bab79d1d4d81856a11a843d4b865c2 148 PIRSF PIRSF016821 5 133 1.9E-42 T 12-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 Alide_1910 a7bab79d1d4d81856a11a843d4b865c2 148 Pfam PF01479 S4 domain 8 54 2.3E-10 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_1910 a7bab79d1d4d81856a11a843d4b865c2 148 SUPERFAMILY SSF55174 7 103 1.22E-27 T 12-10-2018 Alide_1910 a7bab79d1d4d81856a11a843d4b865c2 148 SMART SM00363 8 69 2.5E-7 T 12-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_1910 a7bab79d1d4d81856a11a843d4b865c2 148 Gene3D G3DSA:3.10.290.10 2 106 2.7E-35 T 12-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Alide_1147 7657f9aaa7dc38249a166fea154e3206 665 Gene3D G3DSA:3.30.300.30 535 665 2.5E-27 T 12-10-2018 Alide_1147 7657f9aaa7dc38249a166fea154e3206 665 SUPERFAMILY SSF56801 20 661 7.2E-167 T 12-10-2018 Alide_1147 7657f9aaa7dc38249a166fea154e3206 665 Pfam PF00501 AMP-binding enzyme 102 539 9.8E-92 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_1147 7657f9aaa7dc38249a166fea154e3206 665 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 13 665 49.714 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Alide_1147 7657f9aaa7dc38249a166fea154e3206 665 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 36 91 9.1E-19 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Alide_1147 7657f9aaa7dc38249a166fea154e3206 665 Pfam PF13193 AMP-binding enzyme C-terminal domain 548 630 5.1E-25 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1147 7657f9aaa7dc38249a166fea154e3206 665 Gene3D G3DSA:3.40.50.12780 62 532 1.8E-100 T 12-10-2018 Alide_1147 7657f9aaa7dc38249a166fea154e3206 665 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 32 663 1.6E-284 T 12-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 Alide_1147 7657f9aaa7dc38249a166fea154e3206 665 ProSitePatterns PS00455 Putative AMP-binding domain signature. 271 282 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_0130 c8cc42c3188a8a705f79971f4448a4da 220 PIRSF PIRSF036226 1 201 1.3E-61 T 12-10-2018 IPR014602 Uncharacterised conserved protein UCP036226 Alide_0130 c8cc42c3188a8a705f79971f4448a4da 220 Pfam PF08768 Domain of unknown function (DUF1794) 22 197 6.8E-20 T 12-10-2018 IPR014878 Domain of unknown function DUF1794 Alide_0130 c8cc42c3188a8a705f79971f4448a4da 220 SUPERFAMILY SSF50814 21 198 1.9E-24 T 12-10-2018 IPR012674 Calycin Alide_0130 c8cc42c3188a8a705f79971f4448a4da 220 Gene3D G3DSA:2.40.128.20 16 165 1.1E-5 T 12-10-2018 IPR012674 Calycin Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 Gene3D G3DSA:3.40.190.10 161 258 5.2E-54 T 12-10-2018 Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 Pfam PF03466 LysR substrate binding domain 93 286 1.6E-30 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.4E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 Gene3D G3DSA:3.40.190.10 101 285 5.2E-54 T 12-10-2018 Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 Gene3D G3DSA:1.10.10.10 5 94 1.3E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.2E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.2E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.2E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 SUPERFAMILY SSF53850 93 286 5.25E-30 T 12-10-2018 Alide_0270 16c831d947c787293d7f308cf6ad0a9b 292 SUPERFAMILY SSF46785 2 84 2.21E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2455 287e534735c37b7d19c0aa74921d64da 221 SUPERFAMILY SSF161098 13 205 2.35E-48 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2455 287e534735c37b7d19c0aa74921d64da 221 Gene3D G3DSA:1.10.3720.10 5 221 5.4E-54 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2455 287e534735c37b7d19c0aa74921d64da 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 219 6.1E-27 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_3270 b539f967ebd19d730c35d98b5c0e567b 142 SUPERFAMILY SSF88723 1 136 3.21E-26 T 12-10-2018 IPR029060 PIN-like domain superfamily Alide_3270 b539f967ebd19d730c35d98b5c0e567b 142 Pfam PF01850 PIN domain 4 126 5.6E-11 T 12-10-2018 IPR002716 PIN domain Alide_3270 b539f967ebd19d730c35d98b5c0e567b 142 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 3 135 10.857 T 12-10-2018 IPR022907 VapC family GO:0004540 Alide_3270 b539f967ebd19d730c35d98b5c0e567b 142 Gene3D G3DSA:3.40.50.1010 3 137 3.2E-37 T 12-10-2018 Alide_3418 50c295b2a2d1a06197f5bac831f2a850 184 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 57 104 4.0E-13 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_3418 50c295b2a2d1a06197f5bac831f2a850 184 Gene3D G3DSA:1.20.1290.10 14 177 1.3E-42 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_3418 50c295b2a2d1a06197f5bac831f2a850 184 Pfam PF02627 Carboxymuconolactone decarboxylase family 51 118 2.8E-10 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_3418 50c295b2a2d1a06197f5bac831f2a850 184 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 3 170 1.2E-27 T 12-10-2018 IPR010195 Uncharacterised peroxidase-related Alide_3418 50c295b2a2d1a06197f5bac831f2a850 184 SUPERFAMILY SSF69118 1 175 5.18E-51 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_3787 e71bdd87113fbd0dcb973fca9d697102 564 Gene3D G3DSA:1.20.1250.20 420 563 3.4E-10 T 12-10-2018 Alide_3787 e71bdd87113fbd0dcb973fca9d697102 564 SUPERFAMILY SSF103473 18 558 2.44E-58 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_3787 e71bdd87113fbd0dcb973fca9d697102 564 Gene3D G3DSA:1.20.1250.20 22 367 4.5E-55 T 12-10-2018 Alide_3787 e71bdd87113fbd0dcb973fca9d697102 564 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_3787 e71bdd87113fbd0dcb973fca9d697102 564 Pfam PF00083 Sugar (and other) transporter 27 345 3.2E-28 T 12-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 SUPERFAMILY SSF50891 413 529 3.64E-18 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 235 531 3.1E-70 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 SMART SM00796 1 191 1.0E-91 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 22 200 1.4E-43 T 12-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 SMART SM00797 256 533 1.5E-109 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 258 523 4.8E-83 T 12-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 Gene3D G3DSA:3.30.1360.40 2 72 2.0E-15 T 12-10-2018 Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 1 191 7.0E-67 T 12-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 SUPERFAMILY SSF50891 80 202 2.43E-41 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 Gene3D G3DSA:2.40.100.10 79 209 8.7E-54 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 SUPERFAMILY SSF160467 2 84 6.02E-12 T 12-10-2018 Alide_1633 aa0a32fa765c598d0cf3e5b3bda26d2f 533 Gene3D G3DSA:2.40.100.10 411 532 4.2E-41 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_2870 7767a2ff6f0c8e66c0000508d6d708ec 169 SUPERFAMILY SSF50952 71 153 3.92E-5 T 12-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 Alide_1606 2829d36b060b00d74137d9532aeb1cdb 400 SUPERFAMILY SSF89796 4 400 9.03E-129 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1606 2829d36b060b00d74137d9532aeb1cdb 400 Gene3D G3DSA:3.40.50.10540 5 393 1.8E-127 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1606 2829d36b060b00d74137d9532aeb1cdb 400 Pfam PF02515 CoA-transferase family III 6 377 1.0E-126 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_1606 2829d36b060b00d74137d9532aeb1cdb 400 Gene3D G3DSA:3.30.1540.10 235 326 1.8E-127 T 12-10-2018 Alide_3224 493993022cc1e5bc1e099d66fe2248ac 354 Gene3D G3DSA:3.30.565.10 216 353 6.4E-13 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3224 493993022cc1e5bc1e099d66fe2248ac 354 Pfam PF06580 Histidine kinase 163 241 1.6E-23 T 12-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Alide_3224 493993022cc1e5bc1e099d66fe2248ac 354 SUPERFAMILY SSF55874 220 330 6.02E-9 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0825 c62aba5a75c5f6f81831770406731ad5 326 Gene3D G3DSA:3.40.190.150 31 316 2.5E-109 T 12-10-2018 Alide_0825 c62aba5a75c5f6f81831770406731ad5 326 PIRSF PIRSF017082 4 324 7.1E-75 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0825 c62aba5a75c5f6f81831770406731ad5 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 317 7.6E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0825 c62aba5a75c5f6f81831770406731ad5 326 Gene3D G3DSA:3.40.190.10 128 251 2.5E-109 T 12-10-2018 Alide_0825 c62aba5a75c5f6f81831770406731ad5 326 SUPERFAMILY SSF53850 50 278 6.52E-14 T 12-10-2018 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 Pfam PF00330 Aconitase family (aconitate hydratase) 11 461 1.9E-137 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 SUPERFAMILY SSF53732 5 468 6.15E-147 T 12-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 PRINTS PR00415 Aconitase family signature 347 358 2.4E-37 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 PRINTS PR00415 Aconitase family signature 213 226 2.4E-37 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 PRINTS PR00415 Aconitase family signature 403 416 2.4E-37 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 PRINTS PR00415 Aconitase family signature 112 120 2.4E-37 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 PRINTS PR00415 Aconitase family signature 123 136 2.4E-37 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 PRINTS PR00415 Aconitase family signature 199 212 2.4E-37 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 PRINTS PR00415 Aconitase family signature 290 304 2.4E-37 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 PRINTS PR00415 Aconitase family signature 137 152 2.4E-37 T 12-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 ProSitePatterns PS01244 Aconitase family signature 2. 403 416 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 Gene3D G3DSA:3.30.499.10 332 469 5.3E-50 T 12-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 ProSitePatterns PS00450 Aconitase family signature 1. 343 359 - T 12-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 6 468 2.6E-169 T 12-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Alide_3499 d5d4f237b591b2a7edf648bbc771feba 469 Gene3D G3DSA:3.30.499.20 10 290 1.7E-77 T 12-10-2018 Alide_2967 e5f7d42844915eab823b14ada925b880 318 Pfam PF03466 LysR substrate binding domain 109 304 2.3E-18 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2967 e5f7d42844915eab823b14ada925b880 318 Gene3D G3DSA:1.10.10.10 9 94 4.4E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2967 e5f7d42844915eab823b14ada925b880 318 SUPERFAMILY SSF46785 14 91 1.36E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2967 e5f7d42844915eab823b14ada925b880 318 Gene3D G3DSA:3.40.190.10 180 278 9.3E-49 T 12-10-2018 Alide_2967 e5f7d42844915eab823b14ada925b880 318 SUPERFAMILY SSF53850 99 303 6.05E-34 T 12-10-2018 Alide_2967 e5f7d42844915eab823b14ada925b880 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 53 6.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2967 e5f7d42844915eab823b14ada925b880 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 43 6.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2967 e5f7d42844915eab823b14ada925b880 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 64 6.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2967 e5f7d42844915eab823b14ada925b880 318 Gene3D G3DSA:3.40.190.10 99 303 9.3E-49 T 12-10-2018 Alide_2967 e5f7d42844915eab823b14ada925b880 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 73 2.4E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2055 4df3db42496156ce60d1aa49951c28a5 430 SUPERFAMILY SSF52540 160 375 1.96E-10 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2055 4df3db42496156ce60d1aa49951c28a5 430 Pfam PF13401 AAA domain 174 317 3.4E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2346 d953807661d1badeb8b7fa916b5392d9 355 SUPERFAMILY SSF56281 9 351 4.46E-75 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_2346 d953807661d1badeb8b7fa916b5392d9 355 Gene3D G3DSA:3.60.15.10 28 291 1.1E-58 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_2346 d953807661d1badeb8b7fa916b5392d9 355 Pfam PF00753 Metallo-beta-lactamase superfamily 47 260 2.7E-28 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_2346 d953807661d1badeb8b7fa916b5392d9 355 SMART SM00849 48 264 3.3E-30 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_0973 7f609c813e0aa9cc9e545326a3c3a092 468 Gene3D G3DSA:3.90.1300.10 2 464 3.1E-127 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_0973 7f609c813e0aa9cc9e545326a3c3a092 468 Pfam PF01425 Amidase 25 445 1.4E-85 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_0973 7f609c813e0aa9cc9e545326a3c3a092 468 SUPERFAMILY SSF75304 4 455 1.7E-121 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 1.4E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 1.4E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 1.4E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 SUPERFAMILY SSF53474 10 304 1.49E-47 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 Pfam PF00561 alpha/beta hydrolase fold 33 290 1.2E-23 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 PRINTS PR00412 Epoxide hydrolase signature 123 136 2.0E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 PRINTS PR00412 Epoxide hydrolase signature 280 302 2.0E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 PRINTS PR00412 Epoxide hydrolase signature 62 77 2.0E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 PRINTS PR00412 Epoxide hydrolase signature 39 57 2.0E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_1488 95bb9b7582c884765a3dfd743b1f6025 310 Gene3D G3DSA:3.40.50.1820 8 299 1.6E-55 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_3225 eec70e910de9b1acb2bd637d29ddc705 261 Gene3D G3DSA:3.40.190.10 107 211 2.3E-103 T 12-10-2018 Alide_3225 eec70e910de9b1acb2bd637d29ddc705 261 Gene3D G3DSA:3.40.190.10 24 258 2.3E-103 T 12-10-2018 Alide_3225 eec70e910de9b1acb2bd637d29ddc705 261 SUPERFAMILY SSF53850 24 261 1.09E-84 T 12-10-2018 Alide_3225 eec70e910de9b1acb2bd637d29ddc705 261 PIRSF PIRSF002854 1 261 2.1E-102 T 12-10-2018 IPR004872 Lipoprotein NlpA family Alide_3225 eec70e910de9b1acb2bd637d29ddc705 261 Pfam PF03180 NLPA lipoprotein 24 261 3.2E-98 T 12-10-2018 IPR004872 Lipoprotein NlpA family Alide_3225 eec70e910de9b1acb2bd637d29ddc705 261 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 7 260 1.2E-70 T 12-10-2018 IPR004872 Lipoprotein NlpA family Alide_3246 ed3d1b0de831909a43d0f2b4b8091579 324 Pfam PF03186 CobD/Cbib protein 15 298 5.9E-81 T 12-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Alide_3246 ed3d1b0de831909a43d0f2b4b8091579 324 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 12 317 3.3E-61 T 12-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Alide_3246 ed3d1b0de831909a43d0f2b4b8091579 324 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 322 83.314 T 12-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Alide_3665 c335f87f68ca64f4b5f6f62532f2f41c 384 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 4 39 4.0E-12 T 12-10-2018 IPR011723 Zinc finger/thioredoxin putative Alide_3665 c335f87f68ca64f4b5f6f62532f2f41c 384 Pfam PF13719 zinc-ribbon domain 4 39 8.5E-15 T 12-10-2018 IPR011723 Zinc finger/thioredoxin putative Alide_3665 c335f87f68ca64f4b5f6f62532f2f41c 384 Pfam PF11906 Protein of unknown function (DUF3426) 239 380 8.2E-35 T 12-10-2018 IPR021834 Protein of unknown function DUF3426 Alide_0492 7fed9ed7129361e3ebe428b811720fe9 209 Pfam PF00027 Cyclic nucleotide-binding domain 94 178 1.3E-13 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_0492 7fed9ed7129361e3ebe428b811720fe9 209 SUPERFAMILY SSF51206 74 198 4.98E-23 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_0492 7fed9ed7129361e3ebe428b811720fe9 209 SMART SM00100 72 193 6.9E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_0492 7fed9ed7129361e3ebe428b811720fe9 209 Gene3D G3DSA:2.60.120.10 64 207 8.5E-26 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_2142 b33e7c331addefcdd87e29ff0c0bc8ad 336 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 5 215 5.3E-48 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Alide_2142 b33e7c331addefcdd87e29ff0c0bc8ad 336 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 325 1.1E-100 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Alide_2142 b33e7c331addefcdd87e29ff0c0bc8ad 336 PIRSF PIRSF000267 2 336 1.1E-91 T 12-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 Alide_1796 fa016f776d808bce4be88f1d2858c924 267 Pfam PF01925 Sulfite exporter TauE/SafE 6 264 3.5E-45 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 285 2.6E-118 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 SUPERFAMILY SSF52096 27 282 1.9E-81 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 283 37.192 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 Pfam PF01039 Carboxyl transferase domain 104 281 3.5E-15 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 165 183 2.0E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 131 145 2.0E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 231 242 2.0E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 253 262 2.0E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 202 219 2.0E-36 T 12-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 Alide_3149 4ab06cd28b59110c168b43b25c621f95 290 Gene3D G3DSA:3.90.226.10 27 288 1.2E-79 T 12-10-2018 Alide_0979 7adc7c294d55e1176960ed93af5a66e6 85 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_0979 7adc7c294d55e1176960ed93af5a66e6 85 Pfam PF12838 4Fe-4S dicluster domain 9 57 4.4E-6 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_0979 7adc7c294d55e1176960ed93af5a66e6 85 SUPERFAMILY SSF54862 4 76 2.51E-18 T 12-10-2018 Alide_0979 7adc7c294d55e1176960ed93af5a66e6 85 Gene3D G3DSA:3.30.70.20 2 81 5.3E-33 T 12-10-2018 Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 7 490 83.665 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 SMART SM01240 6 477 0.0 T 12-10-2018 Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 SMART SM00116 95 142 6.5E-8 T 12-10-2018 IPR000644 CBS domain Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 SMART SM00116 156 206 2.8E-4 T 12-10-2018 IPR000644 CBS domain Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 7 477 2.7E-162 T 12-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 Gene3D G3DSA:3.20.20.70 1 490 1.8E-210 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 SUPERFAMILY SSF54631 94 203 1.11E-24 T 12-10-2018 Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 12-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 PIRSF PIRSF000130 1 491 7.9E-200 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 7 457 7.2E-188 T 12-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 Pfam PF00571 CBS domain 147 201 5.7E-5 T 12-10-2018 IPR000644 CBS domain Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 Pfam PF00571 CBS domain 94 138 1.5E-7 T 12-10-2018 IPR000644 CBS domain Alide_1953 1c5db679ef6d95bd8f1683985bf41d41 491 SUPERFAMILY SSF51412 4 481 3.27E-124 T 12-10-2018 Alide_3821 bc8aa7c7d416efcb6d671897fec57a1e 271 Pfam PF09339 IclR helix-turn-helix domain 9 53 2.5E-9 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_3821 bc8aa7c7d416efcb6d671897fec57a1e 271 SUPERFAMILY SSF55781 76 250 5.95E-25 T 12-10-2018 Alide_3821 bc8aa7c7d416efcb6d671897fec57a1e 271 Gene3D G3DSA:1.10.10.10 4 62 2.1E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3821 bc8aa7c7d416efcb6d671897fec57a1e 271 SUPERFAMILY SSF46785 4 72 5.53E-9 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3821 bc8aa7c7d416efcb6d671897fec57a1e 271 Gene3D G3DSA:3.30.450.40 74 251 8.5E-24 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 31 379 3.0E-15 T 12-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 Gene3D G3DSA:2.40.37.10 27 401 2.7E-98 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 TIGRFAM TIGR03099 dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated 4 401 4.3E-183 T 12-10-2018 IPR017530 Pyridoxal-dependent decarboxylase, exosortase system type 1 associated Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 SUPERFAMILY SSF50621 267 401 6.91E-33 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 38 284 1.0E-34 T 12-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 Gene3D G3DSA:3.20.20.10 35 286 2.7E-98 T 12-10-2018 IPR029066 PLP-binding barrel Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 9.1E-10 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 9.1E-10 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 187 200 9.1E-10 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 274 293 9.1E-10 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Alide_0768 f9aba0302e2993b0bbbb862674a7e597 401 SUPERFAMILY SSF51419 27 286 3.93E-61 T 12-10-2018 IPR029066 PLP-binding barrel Alide_1460 3d86b07a9c6115da84623e03438b6159 277 SUPERFAMILY SSF51621 11 272 3.82E-63 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_1460 3d86b07a9c6115da84623e03438b6159 277 Pfam PF13714 Phosphoenolpyruvate phosphomutase 16 252 8.4E-70 T 12-10-2018 Alide_1460 3d86b07a9c6115da84623e03438b6159 277 Gene3D G3DSA:3.20.20.60 2 235 8.5E-65 T 12-10-2018 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 SUPERFAMILY SSF55424 437 560 3.26E-32 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 Gene3D G3DSA:3.50.50.60 103 420 2.1E-113 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 12-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 134 144 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 Gene3D G3DSA:3.50.50.60 246 362 2.1E-113 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 Gene3D G3DSA:3.30.390.30 437 562 1.7E-45 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 SUPERFAMILY SSF51905 102 458 2.29E-52 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 TIGRFAM TIGR02053 MerA: mercury(II) reductase 101 562 9.6E-185 T 12-10-2018 IPR021179 Mercury(II) reductase GO:0016152|GO:0016491|GO:0045340|GO:0050660|GO:0050661|GO:0050787|GO:0055114 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 101 419 3.5E-63 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 Pfam PF00403 Heavy-metal-associated domain 7 65 1.7E-10 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 438 546 3.9E-28 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 SUPERFAMILY SSF55008 5 73 5.11E-16 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 Gene3D G3DSA:3.30.70.100 5 71 7.3E-17 T 12-10-2018 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 PIRSF PIRSF000350 2 562 3.2E-262 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 PRINTS PR00945 Mercuric reductase class II signature 470 490 2.2E-86 T 12-10-2018 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 PRINTS PR00945 Mercuric reductase class II signature 146 165 2.2E-86 T 12-10-2018 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 PRINTS PR00945 Mercuric reductase class II signature 535 554 2.2E-86 T 12-10-2018 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 PRINTS PR00945 Mercuric reductase class II signature 273 290 2.2E-86 T 12-10-2018 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 PRINTS PR00945 Mercuric reductase class II signature 238 255 2.2E-86 T 12-10-2018 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 PRINTS PR00945 Mercuric reductase class II signature 16 26 2.2E-86 T 12-10-2018 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 PRINTS PR00945 Mercuric reductase class II signature 111 129 2.2E-86 T 12-10-2018 Alide_1826 8bdc93211f323f8f1fd250dbdaa686fa 562 PRINTS PR00945 Mercuric reductase class II signature 293 308 2.2E-86 T 12-10-2018 Alide_3635 980e65acc56733efcae841e92d21b34c 300 Pfam PF08543 Phosphomethylpyrimidine kinase 22 263 6.9E-33 T 12-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Alide_3635 980e65acc56733efcae841e92d21b34c 300 Gene3D G3DSA:3.40.1190.20 13 276 9.9E-40 T 12-10-2018 IPR029056 Ribokinase-like Alide_3635 980e65acc56733efcae841e92d21b34c 300 SUPERFAMILY SSF53613 14 272 1.31E-40 T 12-10-2018 IPR029056 Ribokinase-like Alide_2972 ef94ecd54bd4d6bab9f35191a4494f0f 249 Gene3D G3DSA:3.40.50.300 5 247 4.2E-60 T 12-10-2018 Alide_2972 ef94ecd54bd4d6bab9f35191a4494f0f 249 SUPERFAMILY SSF52540 7 245 2.66E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2972 ef94ecd54bd4d6bab9f35191a4494f0f 249 Pfam PF00005 ABC transporter 24 172 2.4E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2972 ef94ecd54bd4d6bab9f35191a4494f0f 249 SMART SM00382 32 245 2.3E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2972 ef94ecd54bd4d6bab9f35191a4494f0f 249 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 222 244 3.8E-6 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_3952 c83b52f8b50a185f047fb0242fc4b04c 368 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 250 279 1.1E-9 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_3952 c83b52f8b50a185f047fb0242fc4b04c 368 SUPERFAMILY SSF69118 12 143 3.74E-15 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_3952 c83b52f8b50a185f047fb0242fc4b04c 368 SUPERFAMILY SSF69118 189 364 1.01E-44 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_3952 c83b52f8b50a185f047fb0242fc4b04c 368 Pfam PF02627 Carboxymuconolactone decarboxylase family 238 313 1.2E-14 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_3952 c83b52f8b50a185f047fb0242fc4b04c 368 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 194 367 8.1E-58 T 12-10-2018 IPR010195 Uncharacterised peroxidase-related Alide_3952 c83b52f8b50a185f047fb0242fc4b04c 368 Gene3D G3DSA:1.20.1290.10 47 148 4.5E-5 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_3952 c83b52f8b50a185f047fb0242fc4b04c 368 Gene3D G3DSA:1.20.1290.10 252 368 1.0E-38 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_2075 9f66a112c3d96f32a860a398608054b7 180 Pfam PF11985 Protein of unknown function (DUF3486) 1 167 1.8E-25 T 12-10-2018 IPR021874 Bacteriophage Mu, Gp27 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 Gene3D G3DSA:1.10.10.10 138 203 3.1E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 SMART SM00448 8 119 1.5E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 Gene3D G3DSA:3.40.50.2300 3 135 8.1E-50 T 12-10-2018 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 5.2E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 5.2E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 5.2E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 SUPERFAMILY SSF52172 7 130 4.55E-33 T 12-10-2018 IPR011006 CheY-like superfamily Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 SMART SM00421 143 200 2.1E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 199 1.7E-19 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 SUPERFAMILY SSF46894 136 202 5.44E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_2224 09c5129cab74eca3ad6f3a6d6f8f7504 208 Pfam PF00072 Response regulator receiver domain 10 118 4.9E-27 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1301 2ee3e8d0423e46a938fe5c06d8f5d71d 397 Gene3D G3DSA:3.40.50.10540 3 386 7.3E-130 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1301 2ee3e8d0423e46a938fe5c06d8f5d71d 397 Pfam PF02515 CoA-transferase family III 4 369 1.8E-124 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_1301 2ee3e8d0423e46a938fe5c06d8f5d71d 397 Gene3D G3DSA:3.30.1540.10 229 320 7.3E-130 T 12-10-2018 Alide_1301 2ee3e8d0423e46a938fe5c06d8f5d71d 397 SUPERFAMILY SSF89796 1 392 2.88E-135 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4375 f80a2d292f37014fa9e043ad0930c2b4 134 SUPERFAMILY SSF53933 41 132 9.92E-35 T 12-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 Alide_4375 f80a2d292f37014fa9e043ad0930c2b4 134 Pfam PF00545 ribonuclease 48 130 3.4E-28 T 12-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 Alide_4375 f80a2d292f37014fa9e043ad0930c2b4 134 Gene3D G3DSA:3.10.450.30 35 134 4.6E-37 T 12-10-2018 Alide_4482 ce2a87955d9dc8366d7fa9015d3dda8f 75 TIGRFAM TIGR04359 TrbK_RP4: entry exclusion lipoprotein TrbK 8 75 5.1E-31 T 12-10-2018 IPR027584 Entry exclusion lipoprotein TrbK Alide_2754 bb9e11a59dc18ddfac50ea1657a2fa85 111 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 57 76 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Alide_2754 bb9e11a59dc18ddfac50ea1657a2fa85 111 Pfam PF00216 Bacterial DNA-binding protein 12 100 1.3E-28 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2754 bb9e11a59dc18ddfac50ea1657a2fa85 111 PRINTS PR01727 Prokaryotic integration host factor signature 85 99 2.2E-12 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2754 bb9e11a59dc18ddfac50ea1657a2fa85 111 PRINTS PR01727 Prokaryotic integration host factor signature 51 66 2.2E-12 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2754 bb9e11a59dc18ddfac50ea1657a2fa85 111 PRINTS PR01727 Prokaryotic integration host factor signature 69 82 2.2E-12 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2754 bb9e11a59dc18ddfac50ea1657a2fa85 111 SUPERFAMILY SSF47729 12 101 3.39E-28 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_2754 bb9e11a59dc18ddfac50ea1657a2fa85 111 SMART SM00411 12 101 5.6E-35 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2754 bb9e11a59dc18ddfac50ea1657a2fa85 111 Gene3D G3DSA:4.10.520.10 12 108 4.1E-31 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_4190 a66f1f6f1fad95ed4dd97b065f608a6d 280 Gene3D G3DSA:3.30.450.40 93 255 9.4E-32 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_4190 a66f1f6f1fad95ed4dd97b065f608a6d 280 Gene3D G3DSA:1.10.10.10 16 92 9.2E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4190 a66f1f6f1fad95ed4dd97b065f608a6d 280 SUPERFAMILY SSF46785 20 92 1.54E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4190 a66f1f6f1fad95ed4dd97b065f608a6d 280 Pfam PF09339 IclR helix-turn-helix domain 21 70 7.9E-11 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_4190 a66f1f6f1fad95ed4dd97b065f608a6d 280 SUPERFAMILY SSF55781 84 252 4.9E-36 T 12-10-2018 Alide_4190 a66f1f6f1fad95ed4dd97b065f608a6d 280 SMART SM00346 19 108 4.3E-17 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_4190 a66f1f6f1fad95ed4dd97b065f608a6d 280 Pfam PF01614 Bacterial transcriptional regulator 140 246 1.6E-13 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 Gene3D G3DSA:1.10.287.130 193 309 4.0E-22 T 12-10-2018 Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 11 461 1.9E-138 T 12-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 443 2.5E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 2.5E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 2.5E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 SUPERFAMILY SSF55874 298 462 5.11E-35 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 462 6.1E-20 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 SMART SM00304 189 242 7.9E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 SUPERFAMILY SSF47384 226 309 4.71E-16 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 SMART SM00388 243 309 2.1E-14 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 SMART SM00387 352 464 4.1E-35 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 Pfam PF00512 His Kinase A (phospho-acceptor) domain 244 309 1.8E-11 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2742 d5e4d7696e1d149c62b677fcef529b9a 467 Gene3D G3DSA:3.30.565.10 316 466 1.2E-32 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1704 7418ee1a0ef1986a6c83068ef97e3bd8 194 SUPERFAMILY SSF53955 14 193 1.59E-19 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_1704 7418ee1a0ef1986a6c83068ef97e3bd8 194 Gene3D G3DSA:1.10.530.40 9 193 4.4E-20 T 12-10-2018 Alide_3869 348436bfa5ed12442754baddd4a50fdc 210 PIRSF PIRSF002884 1 210 1.8E-55 T 12-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 Alide_3869 348436bfa5ed12442754baddd4a50fdc 210 Gene3D G3DSA:1.10.287.500 35 161 8.8E-35 T 12-10-2018 Alide_3869 348436bfa5ed12442754baddd4a50fdc 210 SUPERFAMILY SSF75708 11 209 1.27E-53 T 12-10-2018 Alide_3869 348436bfa5ed12442754baddd4a50fdc 210 Pfam PF04344 Chemotaxis phosphatase, CheZ 17 210 6.8E-60 T 12-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 Alide_1936 4be8d883ba50856d62e6037c6ccd4b89 429 Pfam PF00034 Cytochrome c 51 150 1.4E-5 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1936 4be8d883ba50856d62e6037c6ccd4b89 429 PIRSF PIRSF000018 21 428 2.9E-131 T 12-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 Alide_1936 4be8d883ba50856d62e6037c6ccd4b89 429 SUPERFAMILY SSF46626 321 424 1.41E-24 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_1936 4be8d883ba50856d62e6037c6ccd4b89 429 Gene3D G3DSA:1.10.760.10 186 302 6.9E-7 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_1936 4be8d883ba50856d62e6037c6ccd4b89 429 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 320 404 3.4E-10 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1936 4be8d883ba50856d62e6037c6ccd4b89 429 Gene3D G3DSA:1.10.760.10 311 429 1.3E-31 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_1936 4be8d883ba50856d62e6037c6ccd4b89 429 SUPERFAMILY SSF46626 193 302 2.68E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_1936 4be8d883ba50856d62e6037c6ccd4b89 429 SUPERFAMILY SSF46626 41 172 1.97E-26 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_1936 4be8d883ba50856d62e6037c6ccd4b89 429 Gene3D G3DSA:1.10.760.10 3 161 2.3E-12 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2516 6287e386c5a09a5f5e9f64217d265ac2 443 SUPERFAMILY SSF51621 13 442 2.06E-151 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_2516 6287e386c5a09a5f5e9f64217d265ac2 443 Pfam PF00463 Isocitrate lyase family 264 442 8.1E-51 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Alide_2516 6287e386c5a09a5f5e9f64217d265ac2 443 Pfam PF00463 Isocitrate lyase family 20 263 2.6E-62 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Alide_2516 6287e386c5a09a5f5e9f64217d265ac2 443 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 264 442 2.2E-84 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Alide_2516 6287e386c5a09a5f5e9f64217d265ac2 443 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 16 263 3.8E-109 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Alide_2516 6287e386c5a09a5f5e9f64217d265ac2 443 ProSitePatterns PS00161 Isocitrate lyase signature. 201 206 - T 12-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 Alide_2516 6287e386c5a09a5f5e9f64217d265ac2 443 Gene3D G3DSA:3.20.20.60 7 425 1.7E-179 T 12-10-2018 Alide_2516 6287e386c5a09a5f5e9f64217d265ac2 443 PIRSF PIRSF001362 7 443 9.2E-215 T 12-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 Alide_4077 bd5a64a23a35067e39a3e7f1c75c6ce9 161 SUPERFAMILY SSF88723 20 148 3.64E-11 T 12-10-2018 IPR029060 PIN-like domain superfamily Alide_4077 bd5a64a23a35067e39a3e7f1c75c6ce9 161 Gene3D G3DSA:3.40.50.1010 19 153 2.7E-6 T 12-10-2018 Alide_4077 bd5a64a23a35067e39a3e7f1c75c6ce9 161 TIGRFAM TIGR00305 TIGR00305: putative toxin-antitoxin system toxin component, PIN family 20 133 8.0E-11 T 12-10-2018 IPR002850 PIN family, putative toxin-antitoxin system toxin component Alide_4077 bd5a64a23a35067e39a3e7f1c75c6ce9 161 Pfam PF13470 PIN domain 20 131 4.1E-21 T 12-10-2018 IPR002716 PIN domain Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 Gene3D G3DSA:3.50.50.60 7 395 3.9E-157 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 Gene3D G3DSA:3.90.700.10 239 349 3.9E-157 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 SUPERFAMILY SSF46977 414 511 5.63E-29 T 12-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 Gene3D G3DSA:1.20.58.100 414 524 1.6E-39 T 12-10-2018 Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 Pfam PF02910 Fumarate reductase flavoprotein C-term 430 510 6.8E-13 T 12-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 SUPERFAMILY SSF51905 3 437 5.3E-72 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 Pfam PF00890 FAD binding domain 7 383 5.3E-100 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 SUPERFAMILY SSF56425 229 344 1.64E-42 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 4.1E-10 T 12-10-2018 Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 346 368 4.1E-10 T 12-10-2018 Alide_3420 5c6a8dec0afef7513d61bdc99e50824c 524 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 5 509 1.5E-189 T 12-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 Alide_1469 96b6b66775837eb9c1bde904007486af 281 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 240 266 - T 12-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 Alide_1469 96b6b66775837eb9c1bde904007486af 281 Pfam PF01148 Cytidylyltransferase family 3 279 2.0E-49 T 12-10-2018 Alide_2620 9d38fc4bde451b826a09a6e0b73f7fb6 419 SMART SM01329 31 415 2.3E-171 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_2620 9d38fc4bde451b826a09a6e0b73f7fb6 419 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 32 413 1.8E-114 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_2620 9d38fc4bde451b826a09a6e0b73f7fb6 419 SUPERFAMILY SSF53659 4 419 2.69E-143 T 12-10-2018 Alide_2620 9d38fc4bde451b826a09a6e0b73f7fb6 419 Gene3D G3DSA:3.40.718.10 1 419 2.3E-186 T 12-10-2018 Alide_2620 9d38fc4bde451b826a09a6e0b73f7fb6 419 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 4 419 7.5E-223 T 12-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Alide_2620 9d38fc4bde451b826a09a6e0b73f7fb6 419 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 306 325 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Alide_3243 b8ca54df97031cdb006260400f6d01c0 352 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 10 348 34.221 T 12-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Alide_3243 b8ca54df97031cdb006260400f6d01c0 352 SUPERFAMILY SSF52733 11 346 1.96E-106 T 12-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Alide_3243 b8ca54df97031cdb006260400f6d01c0 352 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 12 346 3.5E-125 T 12-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Alide_3243 b8ca54df97031cdb006260400f6d01c0 352 Gene3D G3DSA:3.40.50.10210 54 329 9.1E-118 T 12-10-2018 Alide_3243 b8ca54df97031cdb006260400f6d01c0 352 Pfam PF02277 Phosphoribosyltransferase 12 346 3.3E-122 T 12-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Alide_3243 b8ca54df97031cdb006260400f6d01c0 352 Gene3D G3DSA:1.10.1610.10 22 346 9.1E-118 T 12-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 Alide_3055 728e9bffc719b2848390f3892889326e 278 Gene3D G3DSA:3.90.850.10 68 278 7.9E-81 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_3055 728e9bffc719b2848390f3892889326e 278 SUPERFAMILY SSF56529 62 278 5.49E-77 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_3055 728e9bffc719b2848390f3892889326e 278 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 73 278 6.7E-68 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Alide_2491 bb5d08600b788c4d113213565ecdd7d1 493 Gene3D G3DSA:1.10.3210.10 307 492 9.0E-43 T 12-10-2018 Alide_2491 bb5d08600b788c4d113213565ecdd7d1 493 Gene3D G3DSA:3.30.420.150 111 290 5.9E-80 T 12-10-2018 Alide_2491 bb5d08600b788c4d113213565ecdd7d1 493 Gene3D G3DSA:3.30.420.40 8 298 5.9E-80 T 12-10-2018 Alide_2491 bb5d08600b788c4d113213565ecdd7d1 493 SUPERFAMILY SSF53067 7 128 3.04E-34 T 12-10-2018 Alide_2491 bb5d08600b788c4d113213565ecdd7d1 493 SUPERFAMILY SSF109604 309 488 4.32E-39 T 12-10-2018 Alide_2491 bb5d08600b788c4d113213565ecdd7d1 493 PIRSF PIRSF001267 1 492 2.1E-164 T 12-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 Alide_2491 bb5d08600b788c4d113213565ecdd7d1 493 SUPERFAMILY SSF53067 131 304 1.23E-39 T 12-10-2018 Alide_2491 bb5d08600b788c4d113213565ecdd7d1 493 Pfam PF02541 Ppx/GppA phosphatase family 26 304 2.8E-71 T 12-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 Alide_2763 3865a0c5b23ff2932561e07de286cf82 507 Gene3D G3DSA:3.90.1210.30 6 83 5.8E-21 T 12-10-2018 Alide_2763 3865a0c5b23ff2932561e07de286cf82 507 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 109 505 7.8E-153 T 12-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 Alide_2763 3865a0c5b23ff2932561e07de286cf82 507 SMART SM00858 13 82 1.1E-15 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Alide_2763 3865a0c5b23ff2932561e07de286cf82 507 Pfam PF08666 SAF domain 13 82 9.8E-13 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 177 190 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 Gene3D G3DSA:3.40.50.300 143 324 1.6E-62 T 12-10-2018 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 Gene3D G3DSA:3.40.50.2300 9 126 7.0E-34 T 12-10-2018 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 Pfam PF00072 Response regulator receiver domain 10 119 1.1E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 Pfam PF02954 Bacterial regulatory protein, Fis family 442 480 8.1E-11 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 Gene3D G3DSA:1.10.10.60 423 485 5.1E-12 T 12-10-2018 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 SMART SM00448 8 119 2.2E-33 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 SUPERFAMILY SSF52172 8 196 2.42E-40 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 SUPERFAMILY SSF46689 367 483 1.39E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 Gene3D G3DSA:1.10.8.60 325 401 4.1E-18 T 12-10-2018 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 SMART SM00382 173 316 1.5E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 SUPERFAMILY SSF52540 153 393 1.62E-67 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 464 484 7.1E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 447 464 7.1E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_3659 614cdef6b19a0a4509610b5b89afb6e8 496 Pfam PF00158 Sigma-54 interaction domain 153 319 6.3E-69 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 Pfam PF00072 Response regulator receiver domain 9 120 2.8E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 205 8.7E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 193 8.7E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 177 8.7E-15 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 ProSitePatterns PS00622 LuxR-type HTH domain signature. 177 204 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 SUPERFAMILY SSF46894 153 220 4.08E-22 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 Gene3D G3DSA:3.40.50.12740 6 221 1.2E-62 T 12-10-2018 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 SMART SM00448 6 119 4.5E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 Pfam PF00196 Bacterial regulatory proteins, luxR family 162 217 3.3E-23 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 SMART SM00421 160 217 3.4E-27 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_0505 71c31879aae168dbf5ce12afd70c1de5 224 SUPERFAMILY SSF52172 5 136 3.84E-31 T 12-10-2018 IPR011006 CheY-like superfamily Alide_4638 2ae5e48f7e49aa108de9a121122aa96a 192 Gene3D G3DSA:3.40.50.1390 1 124 4.0E-40 T 12-10-2018 Alide_4638 2ae5e48f7e49aa108de9a121122aa96a 192 Pfam PF00239 Resolvase, N terminal domain 1 134 1.6E-41 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_4638 2ae5e48f7e49aa108de9a121122aa96a 192 SUPERFAMILY SSF46689 137 177 9.86E-6 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4638 2ae5e48f7e49aa108de9a121122aa96a 192 SMART SM00857 1 135 1.6E-46 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_4638 2ae5e48f7e49aa108de9a121122aa96a 192 SUPERFAMILY SSF53041 1 135 2.22E-39 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Alide_4638 2ae5e48f7e49aa108de9a121122aa96a 192 ProSitePatterns PS00398 Site-specific recombinases signature 2. 54 66 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Alide_4422 a38dc8cfaf7098417e5de0e28ed4d631 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.9E-24 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_4422 a38dc8cfaf7098417e5de0e28ed4d631 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 7.0E-14 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_4422 a38dc8cfaf7098417e5de0e28ed4d631 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.46 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_4422 a38dc8cfaf7098417e5de0e28ed4d631 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 12-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_4422 a38dc8cfaf7098417e5de0e28ed4d631 44 Pfam PF00468 Ribosomal protein L34 1 44 2.8E-23 T 12-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2863 12ac554d8978e19d4edee7bc898c1dc5 153 Pfam PF13801 Heavy-metal resistance 13 131 8.3E-18 T 12-10-2018 IPR025961 Heavy-metal resistance protein Alide_2863 12ac554d8978e19d4edee7bc898c1dc5 153 Gene3D G3DSA:1.20.120.1490 38 144 2.9E-14 T 12-10-2018 Alide_0744 da1efd2479a509d0bc3ee127f7095969 533 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 35 284 3.9E-58 T 12-10-2018 IPR019127 Exosortase Alide_0744 da1efd2479a509d0bc3ee127f7095969 533 TIGRFAM TIGR02602 8TM_EpsH: exosortase 51 285 4.1E-74 T 12-10-2018 IPR013426 Exosortase, EpsH-like Alide_0744 da1efd2479a509d0bc3ee127f7095969 533 TIGRFAM TIGR02914 EpsI_fam: EpsI family protein 349 525 1.1E-35 T 12-10-2018 IPR014263 Methanolan biosynthesis EpsI Alide_0744 da1efd2479a509d0bc3ee127f7095969 533 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 192 285 4.3E-19 T 12-10-2018 IPR026392 Exosortase/Archaeosortase domain Alide_0744 da1efd2479a509d0bc3ee127f7095969 533 Pfam PF11984 Protein of unknown function (DUF3485) 319 523 1.2E-26 T 12-10-2018 IPR014263 Methanolan biosynthesis EpsI Alide_0744 da1efd2479a509d0bc3ee127f7095969 533 TIGRFAM TIGR03109 exosortase_1: exosortase A 22 286 5.4E-101 T 12-10-2018 IPR017540 Exosortase 1 Alide_3616 c5dcf44da608a559b82aa64cbc2e5a54 467 SUPERFAMILY SSF56024 254 431 1.14E-28 T 12-10-2018 Alide_3616 c5dcf44da608a559b82aa64cbc2e5a54 467 SMART SM00155 383 410 0.036 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Alide_3616 c5dcf44da608a559b82aa64cbc2e5a54 467 SMART SM00155 201 228 31.0 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Alide_3616 c5dcf44da608a559b82aa64cbc2e5a54 467 Gene3D G3DSA:3.30.870.10 302 437 3.9E-21 T 12-10-2018 Alide_3616 c5dcf44da608a559b82aa64cbc2e5a54 467 Pfam PF13091 PLD-like domain 317 434 2.9E-21 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_3616 c5dcf44da608a559b82aa64cbc2e5a54 467 Pfam PF13091 PLD-like domain 118 261 5.2E-15 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_3616 c5dcf44da608a559b82aa64cbc2e5a54 467 SUPERFAMILY SSF56024 86 301 1.2E-43 T 12-10-2018 Alide_3616 c5dcf44da608a559b82aa64cbc2e5a54 467 Gene3D G3DSA:3.30.870.10 96 280 1.8E-34 T 12-10-2018 Alide_4182 aa4532ecab0bb1922335f73dd6c1f575 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 319 9.0E-86 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4182 aa4532ecab0bb1922335f73dd6c1f575 323 Gene3D G3DSA:3.40.190.10 125 248 6.5E-119 T 12-10-2018 Alide_4182 aa4532ecab0bb1922335f73dd6c1f575 323 Gene3D G3DSA:3.40.190.150 27 313 6.5E-119 T 12-10-2018 Alide_4182 aa4532ecab0bb1922335f73dd6c1f575 323 PIRSF PIRSF017082 1 323 1.3E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4182 aa4532ecab0bb1922335f73dd6c1f575 323 SUPERFAMILY SSF53850 111 285 1.74E-13 T 12-10-2018 Alide_3349 6d081c0658c2f98f9a0026c9b3ce15ae 293 SUPERFAMILY SSF89550 5 280 5.69E-47 T 12-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Alide_3349 6d081c0658c2f98f9a0026c9b3ce15ae 293 Gene3D G3DSA:3.20.20.140 8 253 2.7E-83 T 12-10-2018 Alide_3349 6d081c0658c2f98f9a0026c9b3ce15ae 293 Gene3D G3DSA:1.10.150.650 100 172 2.7E-83 T 12-10-2018 Alide_3349 6d081c0658c2f98f9a0026c9b3ce15ae 293 Pfam PF02811 PHP domain 8 164 1.1E-8 T 12-10-2018 IPR004013 PHP domain GO:0003824 Alide_3349 6d081c0658c2f98f9a0026c9b3ce15ae 293 SMART SM00481 7 72 4.3E-11 T 12-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Alide_2585 3f584b58ff066148fb7ff1e44f2ba31d 421 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 414 1.1E-97 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Alide_2585 3f584b58ff066148fb7ff1e44f2ba31d 421 PIRSF PIRSF006066 1 421 1.1E-121 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_2585 3f584b58ff066148fb7ff1e44f2ba31d 421 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 14 417 9.7E-108 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_0954 7eeef1d6bce856e8558806117168be6b 332 SUPERFAMILY SSF54427 204 330 5.7E-8 T 12-10-2018 IPR032710 NTF2-like domain superfamily Alide_0954 7eeef1d6bce856e8558806117168be6b 332 Pfam PF04280 Tim44-like domain 195 329 2.6E-20 T 12-10-2018 IPR007379 Tim44-like domain Alide_0954 7eeef1d6bce856e8558806117168be6b 332 SMART SM00978 194 330 5.7E-41 T 12-10-2018 IPR007379 Tim44-like domain Alide_0287 0d1fc8f695f3a6d0711f374488a7205c 243 Gene3D G3DSA:1.10.1710.10 14 131 3.8E-22 T 12-10-2018 IPR036442 ProQ/FinO domain superfamily Alide_0287 0d1fc8f695f3a6d0711f374488a7205c 243 SMART SM00945 34 144 4.3E-39 T 12-10-2018 IPR016103 ProQ/FinO domain Alide_0287 0d1fc8f695f3a6d0711f374488a7205c 243 Pfam PF04352 ProQ/FINO family 39 136 3.5E-26 T 12-10-2018 IPR016103 ProQ/FinO domain Alide_0287 0d1fc8f695f3a6d0711f374488a7205c 243 SUPERFAMILY SSF48657 35 134 2.09E-28 T 12-10-2018 IPR036442 ProQ/FinO domain superfamily Alide_1477 fbf553f864f203f1fd75369082fa1331 384 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 5 372 6.7E-90 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Alide_1477 fbf553f864f203f1fd75369082fa1331 384 Pfam PF02684 Lipid-A-disaccharide synthetase 7 377 1.8E-93 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Alide_1477 fbf553f864f203f1fd75369082fa1331 384 SUPERFAMILY SSF53756 6 346 7.18E-25 T 12-10-2018 Alide_1477 fbf553f864f203f1fd75369082fa1331 384 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 4 384 35.101 T 12-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Alide_1377 0a914e5f0bc32a4ebd588851dfe5d64b 324 SMART SM00382 35 242 5.8E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1377 0a914e5f0bc32a4ebd588851dfe5d64b 324 SUPERFAMILY SSF52540 7 255 1.52E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1377 0a914e5f0bc32a4ebd588851dfe5d64b 324 Pfam PF00005 ABC transporter 27 184 8.8E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1377 0a914e5f0bc32a4ebd588851dfe5d64b 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 318 9.4E-25 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_1377 0a914e5f0bc32a4ebd588851dfe5d64b 324 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1377 0a914e5f0bc32a4ebd588851dfe5d64b 324 Gene3D G3DSA:3.40.50.300 5 323 2.1E-98 T 12-10-2018 Alide_1377 0a914e5f0bc32a4ebd588851dfe5d64b 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 8.8E-20 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_3354 250e8b55a1185a1e8273e95568c5757f 243 Gene3D G3DSA:1.10.10.10 128 230 4.3E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3354 250e8b55a1185a1e8273e95568c5757f 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 224 1.6E-18 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3354 250e8b55a1185a1e8273e95568c5757f 243 SUPERFAMILY SSF52172 1 177 4.98E-30 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3354 250e8b55a1185a1e8273e95568c5757f 243 SMART SM00448 1 113 1.3E-25 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3354 250e8b55a1185a1e8273e95568c5757f 243 SMART SM00862 148 224 4.7E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3354 250e8b55a1185a1e8273e95568c5757f 243 Pfam PF00072 Response regulator receiver domain 5 114 3.4E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3354 250e8b55a1185a1e8273e95568c5757f 243 Gene3D G3DSA:3.40.50.2300 1 127 2.0E-27 T 12-10-2018 Alide_3881 fc602a29df68c76c6d80853eaf6a0c0d 426 SUPERFAMILY SSF117143 79 387 6.67E-80 T 12-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Alide_3881 fc602a29df68c76c6d80853eaf6a0c0d 426 Gene3D G3DSA:2.60.98.20 153 308 1.2E-23 T 12-10-2018 IPR037058 Flagellar hook protein FlgE superfamily Alide_3881 fc602a29df68c76c6d80853eaf6a0c0d 426 Pfam PF00460 Flagella basal body rod protein 3 33 4.2E-10 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Alide_3881 fc602a29df68c76c6d80853eaf6a0c0d 426 Pfam PF07559 Flagellar basal body protein FlaE 188 307 3.5E-24 T 12-10-2018 IPR011491 Flagellar hook protein FlgE Alide_3881 fc602a29df68c76c6d80853eaf6a0c0d 426 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 347 425 6.5E-21 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Alide_3881 fc602a29df68c76c6d80853eaf6a0c0d 426 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 408 3.3E-104 T 12-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Alide_1371 fea17f016ecf8b137facb63eff3417e6 264 Gene3D G3DSA:1.10.10.10 9 86 3.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1371 fea17f016ecf8b137facb63eff3417e6 264 Pfam PF01614 Bacterial transcriptional regulator 136 259 2.4E-32 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_1371 fea17f016ecf8b137facb63eff3417e6 264 SUPERFAMILY SSF46785 17 88 3.2E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1371 fea17f016ecf8b137facb63eff3417e6 264 SUPERFAMILY SSF55781 82 259 5.89E-50 T 12-10-2018 Alide_1371 fea17f016ecf8b137facb63eff3417e6 264 Gene3D G3DSA:3.30.450.40 87 263 3.7E-50 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_1371 fea17f016ecf8b137facb63eff3417e6 264 SMART SM00346 16 106 1.5E-27 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_1371 fea17f016ecf8b137facb63eff3417e6 264 Pfam PF09339 IclR helix-turn-helix domain 18 69 2.6E-14 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2818 9cfd3d79111f9167df1e4b453921c5c2 211 Pfam PF02630 SCO1/SenC 70 134 5.1E-6 T 12-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2818 9cfd3d79111f9167df1e4b453921c5c2 211 SUPERFAMILY SSF52833 69 193 3.59E-20 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2818 9cfd3d79111f9167df1e4b453921c5c2 211 Gene3D G3DSA:3.40.30.10 64 208 1.4E-29 T 12-10-2018 Alide_1197 4848bacd3eac11dc65146d942b21a1ee 136 PIRSF PIRSF021239 23 136 3.2E-55 T 12-10-2018 IPR007437 Protein of unknown function DUF486 Alide_1197 4848bacd3eac11dc65146d942b21a1ee 136 Pfam PF04342 Putative member of DMT superfamily (DUF486) 29 133 4.1E-47 T 12-10-2018 IPR007437 Protein of unknown function DUF486 Alide_2499 6c58efba2a814bb679ff31e8cef41fc4 220 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 16 217 31.63 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 Alide_2499 6c58efba2a814bb679ff31e8cef41fc4 220 SUPERFAMILY SSF53335 31 217 4.09E-38 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2499 6c58efba2a814bb679ff31e8cef41fc4 220 PIRSF PIRSF005461 1 220 2.0E-71 T 12-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 Alide_2499 6c58efba2a814bb679ff31e8cef41fc4 220 Gene3D G3DSA:3.40.50.150 31 220 3.4E-61 T 12-10-2018 Alide_2499 6c58efba2a814bb679ff31e8cef41fc4 220 Pfam PF01728 FtsJ-like methyltransferase 32 214 3.4E-56 T 12-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Alide_1157 4688d15708ce00727eff6a93c46adc97 253 Gene3D G3DSA:3.40.50.150 13 249 1.9E-38 T 12-10-2018 Alide_1157 4688d15708ce00727eff6a93c46adc97 253 SUPERFAMILY SSF53335 22 245 3.45E-33 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0626 18cb762300cf709f4fd5892456d279d9 373 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 16 154 4.1E-68 T 12-10-2018 Alide_0626 18cb762300cf709f4fd5892456d279d9 373 Gene3D G3DSA:3.10.180.10 166 367 7.0E-61 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0626 18cb762300cf709f4fd5892456d279d9 373 SUPERFAMILY SSF54593 14 353 5.51E-81 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0626 18cb762300cf709f4fd5892456d279d9 373 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 23 365 7.8E-112 T 12-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 Alide_0626 18cb762300cf709f4fd5892456d279d9 373 Gene3D G3DSA:3.10.180.10 13 165 3.9E-51 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0626 18cb762300cf709f4fd5892456d279d9 373 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 171 286 1.4E-13 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Alide_0626 18cb762300cf709f4fd5892456d279d9 373 PIRSF PIRSF009283 7 367 9.2E-107 T 12-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 Alide_1365 e6b704d39373237755c3a53d556b08d1 381 Gene3D G3DSA:3.40.50.2300 48 304 3.4E-122 T 12-10-2018 Alide_1365 e6b704d39373237755c3a53d556b08d1 381 Gene3D G3DSA:3.40.50.2300 151 367 3.4E-122 T 12-10-2018 Alide_1365 e6b704d39373237755c3a53d556b08d1 381 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 47 321 1.1E-56 T 12-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Alide_3922 c3b174c08224318e488e8332f90ce898 235 Gene3D G3DSA:1.10.357.10 83 220 1.5E-29 T 12-10-2018 Alide_3922 c3b174c08224318e488e8332f90ce898 235 SUPERFAMILY SSF46689 30 112 5.64E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3922 c3b174c08224318e488e8332f90ce898 235 SUPERFAMILY SSF48498 108 218 2.72E-17 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_3922 c3b174c08224318e488e8332f90ce898 235 Gene3D G3DSA:1.10.10.60 22 82 4.2E-20 T 12-10-2018 Alide_3922 c3b174c08224318e488e8332f90ce898 235 Pfam PF00440 Bacterial regulatory proteins, tetR family 42 87 8.7E-16 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_3922 c3b174c08224318e488e8332f90ce898 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 62 85 4.9E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_3922 c3b174c08224318e488e8332f90ce898 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 54 4.9E-9 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_3922 c3b174c08224318e488e8332f90ce898 235 ProSitePatterns PS01081 TetR-type HTH domain signature. 53 84 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Alide_3478 2cdb1eaf7ac2ed0857e0ba0750b64d6b 308 Pfam PF01040 UbiA prenyltransferase family 39 289 3.3E-60 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Alide_3478 2cdb1eaf7ac2ed0857e0ba0750b64d6b 308 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 22 306 18.975 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Alide_3478 2cdb1eaf7ac2ed0857e0ba0750b64d6b 308 Gene3D G3DSA:1.10.357.140 33 187 1.8E-15 T 12-10-2018 Alide_3478 2cdb1eaf7ac2ed0857e0ba0750b64d6b 308 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 80 102 - T 12-10-2018 IPR030470 UbiA prenyltransferase conserved site Alide_3478 2cdb1eaf7ac2ed0857e0ba0750b64d6b 308 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 25 305 7.3E-93 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Alide_0390 fdad1b2885f6b9b545dd8ee04183770f 329 PIRSF PIRSF017082 1 329 1.8E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0390 fdad1b2885f6b9b545dd8ee04183770f 329 Gene3D G3DSA:3.40.190.150 35 319 1.5E-104 T 12-10-2018 Alide_0390 fdad1b2885f6b9b545dd8ee04183770f 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 325 9.5E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0390 fdad1b2885f6b9b545dd8ee04183770f 329 SUPERFAMILY SSF53850 115 286 1.74E-10 T 12-10-2018 Alide_0390 fdad1b2885f6b9b545dd8ee04183770f 329 Gene3D G3DSA:3.40.190.10 131 254 1.5E-104 T 12-10-2018 Alide_3212 ef2c71e4a730dcae01275592451f7c58 293 Gene3D G3DSA:3.40.50.1380 10 138 1.4E-9 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Alide_3212 ef2c71e4a730dcae01275592451f7c58 293 SUPERFAMILY SSF52335 150 285 2.75E-29 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Alide_3212 ef2c71e4a730dcae01275592451f7c58 293 Gene3D G3DSA:3.40.50.1380 152 289 1.4E-38 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Alide_3212 ef2c71e4a730dcae01275592451f7c58 293 SUPERFAMILY SSF52335 11 138 5.26E-20 T 12-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Alide_3212 ef2c71e4a730dcae01275592451f7c58 293 ProSitePatterns PS01335 Methylglyoxal synthase active site. 217 225 - T 12-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 Alide_3919 9c16ddd22f02078b12cc0834f9f7f776 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 320 1.3E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_1887 cc131fc894865d9ca149780893878b76 418 Pfam PF07690 Major Facilitator Superfamily 23 317 6.1E-32 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_1887 cc131fc894865d9ca149780893878b76 418 Gene3D G3DSA:1.20.1250.20 8 410 2.1E-43 T 12-10-2018 Alide_1887 cc131fc894865d9ca149780893878b76 418 SUPERFAMILY SSF103473 4 409 3.01E-54 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_2279 bb80bfc25888c4f30952a1968f155197 202 Gene3D G3DSA:1.10.10.60 5 52 3.3E-21 T 12-10-2018 Alide_2279 bb80bfc25888c4f30952a1968f155197 202 SUPERFAMILY SSF46689 3 79 3.85E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2279 bb80bfc25888c4f30952a1968f155197 202 Gene3D G3DSA:1.10.357.10 53 192 1.4E-19 T 12-10-2018 Alide_2279 bb80bfc25888c4f30952a1968f155197 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.2E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2279 bb80bfc25888c4f30952a1968f155197 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.2E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2279 bb80bfc25888c4f30952a1968f155197 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 3.7E-13 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2279 bb80bfc25888c4f30952a1968f155197 202 SUPERFAMILY SSF48498 85 188 1.25E-7 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_3045 86b4e269379f1cfac46ed91b4cd8aa6c 300 Pfam PF01476 LysM domain 68 110 7.4E-12 T 12-10-2018 IPR018392 LysM domain Alide_3045 86b4e269379f1cfac46ed91b4cd8aa6c 300 Gene3D G3DSA:3.10.350.10 58 121 1.4E-14 T 12-10-2018 IPR036779 LysM domain superfamily Alide_3045 86b4e269379f1cfac46ed91b4cd8aa6c 300 Pfam PF01551 Peptidase family M23 200 293 1.4E-30 T 12-10-2018 IPR016047 Peptidase M23 Alide_3045 86b4e269379f1cfac46ed91b4cd8aa6c 300 SMART SM00257 67 111 1.4E-9 T 12-10-2018 IPR018392 LysM domain Alide_3045 86b4e269379f1cfac46ed91b4cd8aa6c 300 Gene3D G3DSA:2.70.70.10 173 298 1.7E-34 T 12-10-2018 IPR011055 Duplicated hybrid motif Alide_3045 86b4e269379f1cfac46ed91b4cd8aa6c 300 SUPERFAMILY SSF51261 67 297 1.26E-48 T 12-10-2018 IPR011055 Duplicated hybrid motif Alide_4373 887121bcc82dd1d5728ccaa7f541f4df 488 PIRSF PIRSF012702 1 488 4.0E-161 T 12-10-2018 IPR009197 Microcystin LR degradation protein MlrC Alide_4373 887121bcc82dd1d5728ccaa7f541f4df 488 Pfam PF07171 MlrC C-terminus 296 477 8.3E-56 T 12-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal Alide_4373 887121bcc82dd1d5728ccaa7f541f4df 488 Pfam PF07364 Metallopeptidase family M81 2 283 8.4E-92 T 12-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal Alide_1155 75f80dc3705158f74e156e09a7940386 281 Gene3D G3DSA:3.20.20.140 5 273 2.2E-62 T 12-10-2018 Alide_1155 75f80dc3705158f74e156e09a7940386 281 PIRSF PIRSF005902 2 276 2.2E-57 T 12-10-2018 IPR001130 TatD family GO:0016788 Alide_1155 75f80dc3705158f74e156e09a7940386 281 Pfam PF01026 TatD related DNase 9 272 4.7E-55 T 12-10-2018 IPR001130 TatD family GO:0016788 Alide_1155 75f80dc3705158f74e156e09a7940386 281 SUPERFAMILY SSF51556 8 272 5.93E-68 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_1155 75f80dc3705158f74e156e09a7940386 281 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 199 215 - T 12-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Alide_1169 30c2de5556df3cb83d75dc623c289c9a 555 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 2 306 2.2E-74 T 12-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Alide_1169 30c2de5556df3cb83d75dc623c289c9a 555 Gene3D G3DSA:1.20.58.220 335 431 1.1E-9 T 12-10-2018 IPR038078 PhoU-like domain superfamily Alide_1169 30c2de5556df3cb83d75dc623c289c9a 555 Pfam PF02690 Na+/Pi-cotransporter 158 244 3.8E-8 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Alide_1169 30c2de5556df3cb83d75dc623c289c9a 555 Pfam PF02690 Na+/Pi-cotransporter 13 146 3.5E-34 T 12-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Alide_1169 30c2de5556df3cb83d75dc623c289c9a 555 Pfam PF01895 PhoU domain 343 424 5.1E-10 T 12-10-2018 IPR026022 PhoU domain Alide_1169 30c2de5556df3cb83d75dc623c289c9a 555 Pfam PF01895 PhoU domain 445 528 9.9E-6 T 12-10-2018 IPR026022 PhoU domain Alide_1169 30c2de5556df3cb83d75dc623c289c9a 555 SUPERFAMILY SSF109755 320 532 9.52E-34 T 12-10-2018 Alide_1169 30c2de5556df3cb83d75dc623c289c9a 555 Gene3D G3DSA:1.20.58.220 441 535 2.3E-6 T 12-10-2018 IPR038078 PhoU-like domain superfamily Alide_1659 61389b12b0aca8cfe8caa763af472706 159 SUPERFAMILY SSF50199 6 153 1.83E-32 T 12-10-2018 Alide_1659 61389b12b0aca8cfe8caa763af472706 159 Gene3D G3DSA:2.40.50.90 5 158 1.0E-28 T 12-10-2018 IPR035437 SNase-like, OB-fold superfamily Alide_1659 61389b12b0aca8cfe8caa763af472706 159 SMART SM00318 4 146 6.3E-29 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Alide_1659 61389b12b0aca8cfe8caa763af472706 159 Pfam PF00565 Staphylococcal nuclease homologue 36 146 2.8E-21 T 12-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Alide_4020 f0ef915901c6d58565ec0bcbca290c46 77 Pfam PF11660 Protein of unknown function (DUF3262) 1 76 2.4E-26 T 12-10-2018 IPR021676 Protein of unknown function DUF3262 Alide_4020 f0ef915901c6d58565ec0bcbca290c46 77 TIGRFAM TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family 2 77 4.6E-32 T 12-10-2018 IPR021676 Protein of unknown function DUF3262 Alide_1792 12362fd7d423d7b3947b9cc8881e33e1 318 SUPERFAMILY SSF52402 14 226 3.72E-56 T 12-10-2018 Alide_1792 12362fd7d423d7b3947b9cc8881e33e1 318 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 39 271 4.2E-43 T 12-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 Alide_1792 12362fd7d423d7b3947b9cc8881e33e1 318 Gene3D G3DSA:3.40.50.620 16 228 1.2E-50 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1792 12362fd7d423d7b3947b9cc8881e33e1 318 PIRSF PIRSF002936 9 318 1.2E-126 T 12-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Alide_1673 ce116c5240ed0b6e3f0f2010e0c4ef09 173 Pfam PF07105 Protein of unknown function (DUF1367) 86 139 1.4E-6 T 12-10-2018 IPR009797 Protein of unknown function DUF1367 Alide_0378 0dd497665245b48d5c2985220aa4fcc8 173 Pfam PF04093 rod shape-determining protein MreD 17 114 1.5E-14 T 12-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Alide_0378 0dd497665245b48d5c2985220aa4fcc8 173 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 16 158 9.7E-22 T 12-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Alide_0378 0dd497665245b48d5c2985220aa4fcc8 173 PIRSF PIRSF018472 6 166 1.3E-34 T 12-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type Alide_3910 1f54fe7751b8cc05e469d8f874cc0a3b 342 SUPERFAMILY SSF141523 227 342 9.94E-17 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Alide_3910 1f54fe7751b8cc05e469d8f874cc0a3b 342 Pfam PF01471 Putative peptidoglycan binding domain 58 113 3.2E-14 T 12-10-2018 IPR002477 Peptidoglycan binding-like Alide_3910 1f54fe7751b8cc05e469d8f874cc0a3b 342 Pfam PF01471 Putative peptidoglycan binding domain 143 195 2.7E-8 T 12-10-2018 IPR002477 Peptidoglycan binding-like Alide_3910 1f54fe7751b8cc05e469d8f874cc0a3b 342 SUPERFAMILY SSF47090 47 114 1.51E-16 T 12-10-2018 IPR036365 PGBD-like superfamily Alide_3910 1f54fe7751b8cc05e469d8f874cc0a3b 342 SUPERFAMILY SSF47090 141 196 1.24E-12 T 12-10-2018 IPR036365 PGBD-like superfamily Alide_3910 1f54fe7751b8cc05e469d8f874cc0a3b 342 Gene3D G3DSA:2.40.440.10 227 342 2.3E-16 T 12-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Alide_3910 1f54fe7751b8cc05e469d8f874cc0a3b 342 Pfam PF03734 L,D-transpeptidase catalytic domain 228 341 1.1E-9 T 12-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Alide_3910 1f54fe7751b8cc05e469d8f874cc0a3b 342 Gene3D G3DSA:1.10.101.10 135 201 9.5E-12 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Alide_3910 1f54fe7751b8cc05e469d8f874cc0a3b 342 Gene3D G3DSA:1.10.101.10 42 116 4.4E-16 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Alide_2366 151987e38d1db16c1c95a48e44003400 685 Pfam PF11992 Domain of unknown function (DUF3488) 17 343 9.2E-106 T 12-10-2018 IPR021878 Protein of unknown function DUF3488 Alide_2366 151987e38d1db16c1c95a48e44003400 685 Pfam PF01841 Transglutaminase-like superfamily 396 493 3.7E-24 T 12-10-2018 IPR002931 Transglutaminase-like Alide_2366 151987e38d1db16c1c95a48e44003400 685 SUPERFAMILY SSF54001 288 623 1.12E-62 T 12-10-2018 IPR038765 Papain-like cysteine peptidase superfamily Alide_2366 151987e38d1db16c1c95a48e44003400 685 Gene3D G3DSA:3.10.620.30 365 507 3.8E-20 T 12-10-2018 Alide_2366 151987e38d1db16c1c95a48e44003400 685 SMART SM00460 424 495 3.0E-21 T 12-10-2018 IPR002931 Transglutaminase-like Alide_4118 0d19275592dac32bd95600ba9f05381a 139 Gene3D G3DSA:3.30.420.270 63 132 1.5E-16 T 12-10-2018 Alide_4118 0d19275592dac32bd95600ba9f05381a 139 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 136 9.1E-30 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Alide_4623 807324169e78be440b9aaabc6a24ec41 637 Pfam PF00589 Phage integrase family 446 623 8.1E-17 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_4623 807324169e78be440b9aaabc6a24ec41 637 SUPERFAMILY SSF56349 429 632 1.29E-28 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_4623 807324169e78be440b9aaabc6a24ec41 637 Pfam PF12482 Phage integrase protein 146 219 5.8E-16 T 12-10-2018 IPR022169 Protein of unknown function DUF3701 Alide_4623 807324169e78be440b9aaabc6a24ec41 637 Gene3D G3DSA:1.10.443.10 423 636 9.1E-30 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_0269 a5962737add8a359e4a0e56ed1b391e1 462 Pfam PF00909 Ammonium Transporter Family 63 460 8.3E-121 T 12-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Alide_0269 a5962737add8a359e4a0e56ed1b391e1 462 ProSitePatterns PS01219 Ammonium transporters signature. 214 239 - T 12-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Alide_0269 a5962737add8a359e4a0e56ed1b391e1 462 Gene3D G3DSA:1.10.3430.10 40 462 1.3E-139 T 12-10-2018 IPR029020 Ammonium/urea transporter Alide_0269 a5962737add8a359e4a0e56ed1b391e1 462 PRINTS PR00342 Rhesus blood group protein signature 253 271 1.1E-9 T 12-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 Alide_0269 a5962737add8a359e4a0e56ed1b391e1 462 PRINTS PR00342 Rhesus blood group protein signature 339 357 1.1E-9 T 12-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 Alide_0269 a5962737add8a359e4a0e56ed1b391e1 462 PRINTS PR00342 Rhesus blood group protein signature 284 306 1.1E-9 T 12-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 Alide_0269 a5962737add8a359e4a0e56ed1b391e1 462 PRINTS PR00342 Rhesus blood group protein signature 158 174 1.1E-9 T 12-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 Alide_0269 a5962737add8a359e4a0e56ed1b391e1 462 SUPERFAMILY SSF111352 57 441 3.01E-126 T 12-10-2018 Alide_0269 a5962737add8a359e4a0e56ed1b391e1 462 TIGRFAM TIGR00836 amt: ammonium transporter 61 460 5.7E-134 T 12-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 Alide_4479 e36cc52ab977cb2bf61dae1283872df8 162 Pfam PF07283 Conjugal transfer protein TrbH 34 162 2.1E-58 T 12-10-2018 IPR010837 Conjugal transfer, TrbH Alide_2481 0241b20122ce21f5503e6a685d088bec 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 1.4E-19 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_2481 0241b20122ce21f5503e6a685d088bec 84 SUPERFAMILY SSF143800 1 80 1.14E-20 T 12-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2481 0241b20122ce21f5503e6a685d088bec 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.4E-7 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_2481 0241b20122ce21f5503e6a685d088bec 84 PRINTS PR01249 Ribosomal protein L31 signature 44 59 1.4E-7 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_2481 0241b20122ce21f5503e6a685d088bec 84 Pfam PF01197 Ribosomal protein L31 1 79 1.8E-27 T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_2481 0241b20122ce21f5503e6a685d088bec 84 Gene3D G3DSA:2.30.170.50 1 84 7.7E-23 T 12-10-2018 Alide_2481 0241b20122ce21f5503e6a685d088bec 84 ProSitePatterns PS01143 Ribosomal protein L31 signature. 48 70 - T 12-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0303 10f4f3c1f12f70704068ff7df583ad77 354 Gene3D G3DSA:3.20.20.70 1 353 2.4E-114 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0303 10f4f3c1f12f70704068ff7df583ad77 354 SUPERFAMILY SSF51412 1 351 1.21E-62 T 12-10-2018 Alide_0303 10f4f3c1f12f70704068ff7df583ad77 354 Pfam PF03060 Nitronate monooxygenase 5 343 1.5E-77 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Alide_3802 d0fcdeee26f8c7c1208b550eb3703373 352 Pfam PF12833 Helix-turn-helix domain 265 342 8.2E-20 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_3802 d0fcdeee26f8c7c1208b550eb3703373 352 Gene3D G3DSA:1.10.10.60 239 345 5.9E-24 T 12-10-2018 Alide_3802 d0fcdeee26f8c7c1208b550eb3703373 352 SUPERFAMILY SSF46689 294 344 9.47E-12 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3802 d0fcdeee26f8c7c1208b550eb3703373 352 SMART SM00342 259 341 1.7E-21 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_3802 d0fcdeee26f8c7c1208b550eb3703373 352 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 34 216 8.3E-50 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Alide_2069 6dbcdb146b8a14283fc04ac802cff601 215 Pfam PF01464 Transglycosylase SLT domain 66 167 9.8E-12 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_2069 6dbcdb146b8a14283fc04ac802cff601 215 SUPERFAMILY SSF53955 52 212 3.66E-27 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_2069 6dbcdb146b8a14283fc04ac802cff601 215 Gene3D G3DSA:1.10.530.10 34 202 6.6E-28 T 12-10-2018 Alide_2773 f3705f69b0ce749e5ce04d086d5d539c 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 110 1.1E-29 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_2773 f3705f69b0ce749e5ce04d086d5d539c 222 Gene3D G3DSA:1.10.3720.10 1 219 4.5E-58 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2773 f3705f69b0ce749e5ce04d086d5d539c 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 216 3.8E-22 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_2773 f3705f69b0ce749e5ce04d086d5d539c 222 SUPERFAMILY SSF161098 14 201 4.45E-47 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2148 21fd7af7f77c9bfd900cfbffc6a46cc8 501 Gene3D G3DSA:3.40.50.300 9 85 1.9E-10 T 12-10-2018 Alide_2148 21fd7af7f77c9bfd900cfbffc6a46cc8 501 Pfam PF05872 Bacterial protein of unknown function (DUF853) 5 501 7.1E-233 T 12-10-2018 IPR033186 Helicase HerA-like C-terminal Alide_2148 21fd7af7f77c9bfd900cfbffc6a46cc8 501 Gene3D G3DSA:3.40.50.300 200 367 8.9E-20 T 12-10-2018 Alide_2148 21fd7af7f77c9bfd900cfbffc6a46cc8 501 SUPERFAMILY SSF52540 18 367 4.05E-51 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0741 817506b06dbec871d560f27d233746dc 288 Pfam PF01522 Polysaccharide deacetylase 10 149 6.2E-19 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Alide_0741 817506b06dbec871d560f27d233746dc 288 TIGRFAM TIGR03006 pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily 9 277 2.2E-134 T 12-10-2018 IPR014344 PEP-CTERM locus, polysaccharide deactylase Alide_0741 817506b06dbec871d560f27d233746dc 288 Pfam PF11959 Domain of unknown function (DUF3473) 151 277 4.8E-51 T 12-10-2018 IPR022560 Domain of unknown function DUF3473 Alide_0741 817506b06dbec871d560f27d233746dc 288 SUPERFAMILY SSF88713 8 256 3.46E-45 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Alide_0741 817506b06dbec871d560f27d233746dc 288 Gene3D G3DSA:3.20.20.370 3 253 9.0E-45 T 12-10-2018 Alide_4330 66ac4ad3e3ba2d40c35046d1014ced7e 184 Pfam PF01292 Prokaryotic cytochrome b561 7 177 1.7E-23 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Alide_4330 66ac4ad3e3ba2d40c35046d1014ced7e 184 SUPERFAMILY SSF81342 6 177 3.77E-30 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_3737 a5b800b95d902de5161319cda529a14b 306 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 286 5.9E-66 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_3737 a5b800b95d902de5161319cda529a14b 306 Gene3D G3DSA:3.40.50.1100 43 144 8.0E-113 T 12-10-2018 Alide_3737 a5b800b95d902de5161319cda529a14b 306 SUPERFAMILY SSF53686 2 299 3.8E-92 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_3737 a5b800b95d902de5161319cda529a14b 306 Gene3D G3DSA:3.40.50.1100 8 297 8.0E-113 T 12-10-2018 Alide_3737 a5b800b95d902de5161319cda529a14b 306 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 300 2.5E-116 T 12-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Alide_3737 a5b800b95d902de5161319cda529a14b 306 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 300 1.6E-120 T 12-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Alide_3737 a5b800b95d902de5161319cda529a14b 306 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 12-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 Pfam PF13419 Haloacid dehalogenase-like hydrolase 26 220 1.2E-33 T 12-10-2018 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 Gene3D G3DSA:3.40.50.1000 26 236 2.8E-56 T 12-10-2018 IPR023214 HAD superfamily Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 SUPERFAMILY SSF56784 23 246 3.07E-55 T 12-10-2018 IPR036412 HAD-like superfamily Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 100 214 1.6E-12 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 112 220 5.1E-10 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 22 250 36.372 T 12-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 Gene3D G3DSA:1.10.150.240 37 115 2.8E-56 T 12-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 26 246 6.2E-60 T 12-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 22 33 1.1E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 164 180 1.1E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 133 146 1.1E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_4054 159e1154660244172b42bfe46a0f0e2a 257 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 209 222 1.1E-7 T 12-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Alide_2258 9cc2b006c8ee6c53dce8cf58c5794f14 221 SUPERFAMILY SSF47616 81 219 1.85E-26 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_2258 9cc2b006c8ee6c53dce8cf58c5794f14 221 Gene3D G3DSA:1.20.1050.10 89 221 5.5E-44 T 12-10-2018 Alide_2258 9cc2b006c8ee6c53dce8cf58c5794f14 221 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 81 8.6E-16 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_2258 9cc2b006c8ee6c53dce8cf58c5794f14 221 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 220 1.2E-74 T 12-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 Alide_2258 9cc2b006c8ee6c53dce8cf58c5794f14 221 Gene3D G3DSA:3.40.30.10 1 88 1.4E-25 T 12-10-2018 Alide_2258 9cc2b006c8ee6c53dce8cf58c5794f14 221 SUPERFAMILY SSF52833 1 90 3.43E-24 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0027 2b254fc7a87ab1f6791597e6d23f863c 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 236 1.1E-42 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_0027 2b254fc7a87ab1f6791597e6d23f863c 266 SUPERFAMILY SSF52096 2 250 1.16E-60 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0027 2b254fc7a87ab1f6791597e6d23f863c 266 Gene3D G3DSA:3.90.226.10 4 260 4.7E-76 T 12-10-2018 Alide_2534 2e6084815a4dd43e5bf69816d57a3921 117 Gene3D G3DSA:3.30.70.100 1 116 3.8E-44 T 12-10-2018 Alide_2534 2e6084815a4dd43e5bf69816d57a3921 117 SUPERFAMILY SSF54909 5 115 2.6E-49 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_2534 2e6084815a4dd43e5bf69816d57a3921 117 Pfam PF07237 Protein of unknown function (DUF1428) 5 103 1.1E-45 T 12-10-2018 IPR009874 Protein of unknown function DUF1428 Alide_2534 2e6084815a4dd43e5bf69816d57a3921 117 PIRSF PIRSF007028 4 117 1.1E-47 T 12-10-2018 IPR009874 Protein of unknown function DUF1428 Alide_0100 79c4290794b651c4fe75455cbd45e9e4 271 SUPERFAMILY SSF52540 1 269 2.0E-53 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0100 79c4290794b651c4fe75455cbd45e9e4 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 1.6E-103 T 12-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 Alide_0100 79c4290794b651c4fe75455cbd45e9e4 271 Gene3D G3DSA:3.40.50.300 1 260 6.4E-69 T 12-10-2018 Alide_0100 79c4290794b651c4fe75455cbd45e9e4 271 PIRSF PIRSF003092 1 271 2.2E-88 T 12-10-2018 IPR025501 ATP binding protein MinD Alide_0100 79c4290794b651c4fe75455cbd45e9e4 271 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 226 3.2E-19 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_3924 1c18173fdba5dc307e67c1d67dacfb66 686 Pfam PF13361 UvrD-like helicase C-terminal domain 268 632 9.7E-58 T 12-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Alide_3924 1c18173fdba5dc307e67c1d67dacfb66 686 Gene3D G3DSA:3.40.50.300 4 264 1.3E-87 T 12-10-2018 Alide_3924 1c18173fdba5dc307e67c1d67dacfb66 686 Gene3D G3DSA:1.10.486.10 376 552 3.4E-102 T 12-10-2018 Alide_3924 1c18173fdba5dc307e67c1d67dacfb66 686 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 2 682 36.017 T 12-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 Alide_3924 1c18173fdba5dc307e67c1d67dacfb66 686 Gene3D G3DSA:3.40.50.300 271 651 3.4E-102 T 12-10-2018 Alide_3924 1c18173fdba5dc307e67c1d67dacfb66 686 Gene3D G3DSA:1.10.10.160 104 180 1.3E-87 T 12-10-2018 IPR013986 DExx box DNA helicase domain superfamily Alide_3924 1c18173fdba5dc307e67c1d67dacfb66 686 Pfam PF00580 UvrD/REP helicase N-terminal domain 5 262 6.2E-67 T 12-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Alide_3924 1c18173fdba5dc307e67c1d67dacfb66 686 SUPERFAMILY SSF52540 2 653 7.73E-154 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0352 06638b85909e49ee1b69163bc48c3a7f 291 Pfam PF04909 Amidohydrolase 28 291 6.1E-36 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_0352 06638b85909e49ee1b69163bc48c3a7f 291 SUPERFAMILY SSF51556 23 291 3.61E-67 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_0352 06638b85909e49ee1b69163bc48c3a7f 291 Gene3D G3DSA:3.20.20.140 12 291 2.1E-79 T 12-10-2018 Alide_0639 d3560b16267ca3a21c4cbce78dd0610b 258 Hamap MF_01274 Type III pantothenate kinase [coaX]. 2 253 16.552 T 12-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Alide_0639 d3560b16267ca3a21c4cbce78dd0610b 258 Pfam PF03309 Type III pantothenate kinase 3 204 1.2E-53 T 12-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Alide_0639 d3560b16267ca3a21c4cbce78dd0610b 258 SUPERFAMILY SSF53067 3 116 8.74E-27 T 12-10-2018 Alide_0639 d3560b16267ca3a21c4cbce78dd0610b 258 Gene3D G3DSA:3.30.420.490 126 241 2.2E-64 T 12-10-2018 Alide_0639 d3560b16267ca3a21c4cbce78dd0610b 258 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 246 2.8E-21 T 12-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Alide_0639 d3560b16267ca3a21c4cbce78dd0610b 258 Gene3D G3DSA:3.30.420.40 4 245 2.2E-64 T 12-10-2018 Alide_0639 d3560b16267ca3a21c4cbce78dd0610b 258 SUPERFAMILY SSF53067 125 250 1.48E-27 T 12-10-2018 Alide_0760 a4feb47c2dc9f147b7fd2e6755513576 634 SUPERFAMILY SSF53649 267 571 7.03E-31 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Alide_0760 a4feb47c2dc9f147b7fd2e6755513576 634 Gene3D G3DSA:3.40.720.10 257 555 8.7E-44 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Alide_0760 a4feb47c2dc9f147b7fd2e6755513576 634 Pfam PF00884 Sulfatase 270 509 3.2E-20 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Alide_0641 ba004084340716bc738a76ca2742f100 147 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 22 135 1.9E-30 T 12-10-2018 IPR008769 Poly granule associated Alide_0641 ba004084340716bc738a76ca2742f100 147 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 15 135 2.9E-45 T 12-10-2018 IPR008769 Poly granule associated Alide_2577 2ff292830fcaef65df9178a26dbf8b36 311 Gene3D G3DSA:3.40.190.10 172 269 4.4E-16 T 12-10-2018 Alide_2577 2ff292830fcaef65df9178a26dbf8b36 311 Pfam PF03466 LysR substrate binding domain 95 295 1.4E-23 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2577 2ff292830fcaef65df9178a26dbf8b36 311 SUPERFAMILY SSF46785 7 89 8.03E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2577 2ff292830fcaef65df9178a26dbf8b36 311 Gene3D G3DSA:3.40.190.10 106 274 4.4E-16 T 12-10-2018 Alide_2577 2ff292830fcaef65df9178a26dbf8b36 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 68 5.7E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2577 2ff292830fcaef65df9178a26dbf8b36 311 SUPERFAMILY SSF53850 95 301 9.65E-28 T 12-10-2018 Alide_2577 2ff292830fcaef65df9178a26dbf8b36 311 Gene3D G3DSA:1.10.10.10 8 94 8.8E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4193 b0ff2eb322d77f773e3f91f1be5a2eca 325 PIRSF PIRSF017082 5 325 7.5E-89 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4193 b0ff2eb322d77f773e3f91f1be5a2eca 325 Gene3D G3DSA:3.40.190.150 30 315 1.7E-122 T 12-10-2018 Alide_4193 b0ff2eb322d77f773e3f91f1be5a2eca 325 SUPERFAMILY SSF53850 110 287 1.69E-14 T 12-10-2018 Alide_4193 b0ff2eb322d77f773e3f91f1be5a2eca 325 Gene3D G3DSA:3.40.190.10 127 250 1.7E-122 T 12-10-2018 Alide_4193 b0ff2eb322d77f773e3f91f1be5a2eca 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 320 4.7E-94 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2717 d7e0963711728d6079eace5f9bcf33f2 261 TIGRFAM TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family 14 226 1.9E-89 T 12-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Alide_2717 d7e0963711728d6079eace5f9bcf33f2 261 Pfam PF08900 Domain of unknown function (DUF1845) 13 223 3.0E-80 T 12-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 130 219 9.7E-25 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 SMART SM01232 130 222 8.9E-44 T 12-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 SUPERFAMILY SSF81624 2 139 1.96E-31 T 12-10-2018 IPR035937 MutM-like, N-terminal Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 SUPERFAMILY SSF57716 218 269 6.84E-17 T 12-10-2018 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 ProSitePatterns PS01242 Zinc finger FPG-type signature. 245 269 - T 12-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 Gene3D G3DSA:1.10.8.50 132 271 2.1E-46 T 12-10-2018 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 Pfam PF06827 Zinc finger found in FPG and IleRS 242 269 5.6E-10 T 12-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 112 1.5E-27 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 SUPERFAMILY SSF46946 131 222 2.21E-27 T 12-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 Gene3D G3DSA:3.20.190.10 2 125 1.4E-31 T 12-10-2018 IPR035937 MutM-like, N-terminal Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 SMART SM00898 2 113 2.7E-42 T 12-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 270 40.22 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 Alide_0986 23add076f34ca3f2bf66f89b37a7537a 271 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 269 1.5E-83 T 12-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 Alide_3111 506dd77e14c974b5e6e8af4bb00eea5d 495 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 15 473 4.9E-114 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Alide_3111 506dd77e14c974b5e6e8af4bb00eea5d 495 Pfam PF00860 Permease family 211 442 4.1E-69 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Alide_3111 506dd77e14c974b5e6e8af4bb00eea5d 495 Pfam PF00860 Permease family 18 172 6.3E-35 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Alide_3815 bb8ad452b7b249e285c7bfe272e90f8f 503 Gene3D G3DSA:3.10.105.10 268 476 1.4E-94 T 12-10-2018 Alide_3815 bb8ad452b7b249e285c7bfe272e90f8f 503 Gene3D G3DSA:3.90.76.10 46 192 1.4E-94 T 12-10-2018 Alide_3815 bb8ad452b7b249e285c7bfe272e90f8f 503 PIRSF PIRSF002741 3 503 3.8E-86 T 12-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Alide_3815 bb8ad452b7b249e285c7bfe272e90f8f 503 Gene3D G3DSA:3.40.190.10 193 485 1.4E-94 T 12-10-2018 Alide_3815 bb8ad452b7b249e285c7bfe272e90f8f 503 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 411 4.3E-73 T 12-10-2018 IPR000914 Solute-binding protein family 5 domain Alide_3815 bb8ad452b7b249e285c7bfe272e90f8f 503 SUPERFAMILY SSF53850 33 491 8.32E-109 T 12-10-2018 Alide_0139 e11b55fab8c23507a56eedd426b8feb2 515 Pfam PF00501 AMP-binding enzyme 7 404 4.3E-70 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0139 e11b55fab8c23507a56eedd426b8feb2 515 Gene3D G3DSA:3.40.50.12780 1 397 1.1E-91 T 12-10-2018 Alide_0139 e11b55fab8c23507a56eedd426b8feb2 515 Gene3D G3DSA:3.30.300.310 401 508 1.4E-31 T 12-10-2018 Alide_0139 e11b55fab8c23507a56eedd426b8feb2 515 SUPERFAMILY SSF56801 4 505 6.93E-122 T 12-10-2018 Alide_0139 e11b55fab8c23507a56eedd426b8feb2 515 ProSitePatterns PS00455 Putative AMP-binding domain signature. 154 165 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_0139 e11b55fab8c23507a56eedd426b8feb2 515 Pfam PF13193 AMP-binding enzyme C-terminal domain 414 492 2.8E-20 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 SUPERFAMILY SSF46689 361 451 6.45E-11 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 Gene3D G3DSA:3.40.50.300 141 319 2.3E-66 T 12-10-2018 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 Pfam PF00072 Response regulator receiver domain 11 119 3.3E-17 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 SMART SM00382 170 312 2.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 SMART SM00448 8 122 2.7E-15 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 Gene3D G3DSA:3.40.50.2300 2 140 3.1E-24 T 12-10-2018 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 Pfam PF00158 Sigma-54 interaction domain 151 315 2.2E-68 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 174 187 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 361 370 - T 12-10-2018 IPR025944 Sigma-54 interaction domain, conserved site Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 452 3.6E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 415 432 3.6E-7 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 SUPERFAMILY SSF52540 150 389 1.9E-68 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 SUPERFAMILY SSF52172 10 194 6.55E-32 T 12-10-2018 IPR011006 CheY-like superfamily Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 235 250 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 Gene3D G3DSA:1.10.8.60 320 385 9.6E-19 T 12-10-2018 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 Gene3D G3DSA:1.10.10.60 394 453 6.2E-11 T 12-10-2018 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 Pfam PF02954 Bacterial regulatory protein, Fis family 409 443 2.3E-9 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_0770 93caed10e365a01e20bfc3d1434572a8 453 TIGRFAM TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor 10 452 4.4E-217 T 12-10-2018 IPR014264 Signal transduction response regulator, PEP-CTERM system, putative Alide_3764 c6a55abc6df70b0c9bf984d92d1893f3 104 Gene3D G3DSA:1.10.10.10 1 75 1.9E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3764 c6a55abc6df70b0c9bf984d92d1893f3 104 SUPERFAMILY SSF48295 4 70 7.85E-15 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Alide_3764 c6a55abc6df70b0c9bf984d92d1893f3 104 Pfam PF06627 Protein of unknown function (DUF1153) 3 62 1.1E-7 T 12-10-2018 IPR009534 Protein of unknown function DUF1153 Alide_0137 0574d372568339afa4a3f2c26704e130 328 SUPERFAMILY SSF53850 121 290 1.54E-11 T 12-10-2018 Alide_0137 0574d372568339afa4a3f2c26704e130 328 PIRSF PIRSF017082 1 328 8.8E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0137 0574d372568339afa4a3f2c26704e130 328 Gene3D G3DSA:3.40.190.10 130 253 1.5E-108 T 12-10-2018 Alide_0137 0574d372568339afa4a3f2c26704e130 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 323 3.0E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0137 0574d372568339afa4a3f2c26704e130 328 Gene3D G3DSA:3.40.190.150 34 318 1.5E-108 T 12-10-2018 Alide_2715 157b8585498f6b32445dbc8e4618ae32 127 Gene3D G3DSA:2.40.50.140 2 116 8.7E-22 T 12-10-2018 Alide_2715 157b8585498f6b32445dbc8e4618ae32 127 SUPERFAMILY SSF50249 2 117 1.0E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_2715 157b8585498f6b32445dbc8e4618ae32 127 Pfam PF00436 Single-strand binding protein family 8 109 2.6E-12 T 12-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Alide_2715 157b8585498f6b32445dbc8e4618ae32 127 PIRSF PIRSF002070 1 126 9.0E-17 T 12-10-2018 Alide_4314 1842e509affa85a2651791091ce480fa 161 SUPERFAMILY SSF55811 3 146 3.66E-25 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_4314 1842e509affa85a2651791091ce480fa 161 Pfam PF00293 NUDIX domain 7 123 2.3E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Alide_4314 1842e509affa85a2651791091ce480fa 161 Gene3D G3DSA:3.90.79.10 2 155 9.9E-36 T 12-10-2018 Alide_1311 e8be623f5c7f07c54703fe1ede1da354 159 Gene3D G3DSA:3.30.1330.50 1 159 6.3E-64 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Alide_1311 e8be623f5c7f07c54703fe1ede1da354 159 Pfam PF02542 YgbB family 3 156 4.3E-61 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Alide_1311 e8be623f5c7f07c54703fe1ede1da354 159 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 37 52 - T 12-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Alide_1311 e8be623f5c7f07c54703fe1ede1da354 159 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4 158 2.4E-61 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Alide_1311 e8be623f5c7f07c54703fe1ede1da354 159 SUPERFAMILY SSF69765 1 158 6.41E-61 T 12-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Alide_1311 e8be623f5c7f07c54703fe1ede1da354 159 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 3 158 34.675 T 12-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Alide_2418 5c70d9f89fee2c904cd552c252ac4778 184 Pfam PF01883 Iron-sulfur cluster assembly protein 87 162 7.9E-15 T 12-10-2018 IPR002744 MIP18 family-like Alide_2418 5c70d9f89fee2c904cd552c252ac4778 184 Gene3D G3DSA:3.30.300.130 79 184 3.1E-34 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Alide_2418 5c70d9f89fee2c904cd552c252ac4778 184 TIGRFAM TIGR03406 FeS_long_SufT: probable FeS assembly SUF system protein SufT 10 184 7.9E-70 T 12-10-2018 IPR017776 FeS assembly SUF system protein SufT, putative Alide_2418 5c70d9f89fee2c904cd552c252ac4778 184 SUPERFAMILY SSF117916 84 183 3.6E-27 T 12-10-2018 IPR034904 Fe-S cluster assembly domain superfamily Alide_3245 9e4a34045e4b2a1aa855074ebcdbba16 328 Pfam PF00155 Aminotransferase class I and II 185 313 2.9E-4 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_3245 9e4a34045e4b2a1aa855074ebcdbba16 328 SUPERFAMILY SSF53383 17 324 5.7E-36 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3245 9e4a34045e4b2a1aa855074ebcdbba16 328 Gene3D G3DSA:3.90.1150.10 19 323 2.0E-41 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_3245 9e4a34045e4b2a1aa855074ebcdbba16 328 Gene3D G3DSA:3.40.640.10 30 231 2.0E-41 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3388 987a7aa449b37d87f14c7bd524fea17c 187 Pfam PF11749 Protein of unknown function (DUF3305) 9 153 3.7E-55 T 12-10-2018 IPR021736 Protein of unknown function DUF3305 Alide_3841 47e20d70bd46bf8a5376ecead4153a2b 120 SUPERFAMILY SSF52172 2 120 5.55E-38 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3841 47e20d70bd46bf8a5376ecead4153a2b 120 Pfam PF00072 Response regulator receiver domain 4 115 2.6E-29 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3841 47e20d70bd46bf8a5376ecead4153a2b 120 Gene3D G3DSA:3.40.50.12740 2 120 2.1E-38 T 12-10-2018 Alide_3841 47e20d70bd46bf8a5376ecead4153a2b 120 SMART SM00448 2 115 5.7E-38 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3275 2c16558f796a965887b4a75bfdd42b9d 318 Gene3D G3DSA:3.40.190.150 27 305 4.9E-102 T 12-10-2018 Alide_3275 2c16558f796a965887b4a75bfdd42b9d 318 SUPERFAMILY SSF53850 106 267 4.71E-9 T 12-10-2018 Alide_3275 2c16558f796a965887b4a75bfdd42b9d 318 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 312 8.0E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3275 2c16558f796a965887b4a75bfdd42b9d 318 Gene3D G3DSA:3.40.190.10 119 241 4.9E-102 T 12-10-2018 Alide_3275 2c16558f796a965887b4a75bfdd42b9d 318 PIRSF PIRSF017082 3 316 6.6E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4438 59cc2f75f953238ba92652d603681152 254 Gene3D G3DSA:3.40.50.300 1 254 1.4E-51 T 12-10-2018 Alide_4438 59cc2f75f953238ba92652d603681152 254 SUPERFAMILY SSF52540 1 251 2.56E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4438 59cc2f75f953238ba92652d603681152 254 Pfam PF13614 AAA domain 1 172 3.8E-29 T 12-10-2018 IPR025669 AAA domain Alide_3062 87cbc5c39492648177428d0a78537e8c 270 SUPERFAMILY SSF53474 4 262 5.91E-32 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_3062 87cbc5c39492648177428d0a78537e8c 270 Gene3D G3DSA:3.40.50.1820 2 264 3.8E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_3062 87cbc5c39492648177428d0a78537e8c 270 Pfam PF12697 Alpha/beta hydrolase family 4 257 4.2E-14 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0063 c7a1f8d077a8a886a12dab7e96ddc78c 181 Pfam PF05069 Phage virion morphogenesis family 14 178 4.4E-18 T 12-10-2018 IPR006522 Phage virion morphogensis protein Alide_1084 1678efabd4e2e2a3f9cce87c703de46d 174 Gene3D G3DSA:2.160.10.10 1 173 1.2E-65 T 12-10-2018 Alide_1084 1678efabd4e2e2a3f9cce87c703de46d 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 9.0E-9 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_1084 1678efabd4e2e2a3f9cce87c703de46d 174 SUPERFAMILY SSF51161 5 168 1.15E-47 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily Alide_3082 293986673ab488aa7b6e15b1f6ef4596 178 Gene3D G3DSA:3.30.70.2060 60 119 4.5E-19 T 12-10-2018 Alide_3082 293986673ab488aa7b6e15b1f6ef4596 178 Pfam PF05573 NosL 21 166 2.1E-55 T 12-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL Alide_3082 293986673ab488aa7b6e15b1f6ef4596 178 Gene3D G3DSA:3.30.70.2050 120 176 4.1E-10 T 12-10-2018 Alide_3082 293986673ab488aa7b6e15b1f6ef4596 178 SUPERFAMILY SSF160387 60 177 1.23E-36 T 12-10-2018 Alide_0933 4c1647c0b84c07548262b12c2cae1c41 444 Gene3D G3DSA:3.10.580.10 195 348 2.9E-35 T 12-10-2018 Alide_0933 4c1647c0b84c07548262b12c2cae1c41 444 Pfam PF00571 CBS domain 286 334 1.7E-4 T 12-10-2018 IPR000644 CBS domain Alide_0933 4c1647c0b84c07548262b12c2cae1c41 444 SUPERFAMILY SSF54631 202 337 1.93E-21 T 12-10-2018 Alide_0933 4c1647c0b84c07548262b12c2cae1c41 444 Gene3D G3DSA:3.30.465.10 349 427 2.3E-28 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Alide_0933 4c1647c0b84c07548262b12c2cae1c41 444 SMART SM01091 348 428 1.9E-29 T 12-10-2018 IPR005170 Transporter-associated domain Alide_0933 4c1647c0b84c07548262b12c2cae1c41 444 Pfam PF03471 Transporter associated domain 349 426 8.7E-22 T 12-10-2018 IPR005170 Transporter-associated domain Alide_0933 4c1647c0b84c07548262b12c2cae1c41 444 SUPERFAMILY SSF56176 346 433 7.63E-24 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_0933 4c1647c0b84c07548262b12c2cae1c41 444 Pfam PF01595 Domain of unknown function DUF21 9 199 2.3E-42 T 12-10-2018 IPR002550 CNNM, transmembrane domain Alide_2960 34cdd4b1002da1d3705ed0be1247ddce 410 Gene3D G3DSA:3.40.50.10540 4 386 5.8E-113 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2960 34cdd4b1002da1d3705ed0be1247ddce 410 SUPERFAMILY SSF89796 3 392 5.76E-124 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2960 34cdd4b1002da1d3705ed0be1247ddce 410 Gene3D G3DSA:3.30.1540.10 231 322 5.8E-113 T 12-10-2018 Alide_2960 34cdd4b1002da1d3705ed0be1247ddce 410 Pfam PF02515 CoA-transferase family III 5 371 8.4E-112 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_4281 11c477b232d9042181b700252add940d 330 PIRSF PIRSF017082 4 329 1.9E-67 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4281 11c477b232d9042181b700252add940d 330 SUPERFAMILY SSF53850 38 295 7.96E-6 T 12-10-2018 Alide_4281 11c477b232d9042181b700252add940d 330 Gene3D G3DSA:3.40.190.150 36 321 6.3E-97 T 12-10-2018 Alide_4281 11c477b232d9042181b700252add940d 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 325 3.9E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4281 11c477b232d9042181b700252add940d 330 Gene3D G3DSA:3.40.190.10 133 257 6.3E-97 T 12-10-2018 Alide_3206 0543c0636184a40d77b9857683c11f6d 310 SUPERFAMILY SSF103481 47 154 3.53E-10 T 12-10-2018 Alide_3206 0543c0636184a40d77b9857683c11f6d 310 SUPERFAMILY SSF103481 215 309 2.75E-10 T 12-10-2018 Alide_4274 b3ee53f14548f2b63cf8a9d10c6a4267 111 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 9 105 5.8E-27 T 12-10-2018 IPR008407 Branched-chain amino acid transport, AzlD Alide_2665 a2f5a8ad93c16e283f347acf7a7023ad 267 Pfam PF13672 Protein phosphatase 2C 14 217 8.3E-12 T 12-10-2018 Alide_2665 a2f5a8ad93c16e283f347acf7a7023ad 267 SMART SM00332 3 246 4.2E-6 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_2665 a2f5a8ad93c16e283f347acf7a7023ad 267 Gene3D G3DSA:3.60.40.10 1 251 1.4E-47 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_2665 a2f5a8ad93c16e283f347acf7a7023ad 267 SMART SM00331 20 248 8.4E-18 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_2665 a2f5a8ad93c16e283f347acf7a7023ad 267 SUPERFAMILY SSF81606 6 248 3.27E-48 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_3928 c1e1a9621be8ecbdd19f9ac6fad4939c 599 SUPERFAMILY SSF53649 54 564 1.08E-132 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Alide_3928 c1e1a9621be8ecbdd19f9ac6fad4939c 599 Gene3D G3DSA:3.30.1120.10 499 576 7.3E-19 T 12-10-2018 Alide_3928 c1e1a9621be8ecbdd19f9ac6fad4939c 599 ProSitePatterns PS00149 Sulfatases signature 2. 156 166 - T 12-10-2018 IPR024607 Sulfatase, conserved site Alide_3928 c1e1a9621be8ecbdd19f9ac6fad4939c 599 Gene3D G3DSA:3.40.720.10 51 490 8.6E-122 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Alide_3928 c1e1a9621be8ecbdd19f9ac6fad4939c 599 Pfam PF00884 Sulfatase 54 462 6.7E-75 T 12-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 Alide_4630 77e0d0897246b0a1d9400b701f9a8dd6 123 SMART SM00411 26 123 1.1E-4 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_4630 77e0d0897246b0a1d9400b701f9a8dd6 123 Gene3D G3DSA:4.10.520.10 26 122 1.9E-11 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_4630 77e0d0897246b0a1d9400b701f9a8dd6 123 SUPERFAMILY SSF47729 26 121 2.65E-13 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_4630 77e0d0897246b0a1d9400b701f9a8dd6 123 Pfam PF00216 Bacterial DNA-binding protein 26 121 2.3E-14 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_3605 c97a756ad567f834c7f39e8f1599dc5a 385 SUPERFAMILY SSF56349 64 374 8.24E-35 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_3605 c97a756ad567f834c7f39e8f1599dc5a 385 Gene3D G3DSA:1.10.443.10 194 380 2.7E-21 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_3605 c97a756ad567f834c7f39e8f1599dc5a 385 Pfam PF00589 Phage integrase family 198 371 7.1E-15 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1720 b2259255db037b84a4632efe1f4640ed 493 Pfam PF13148 Protein of unknown function (DUF3987) 152 358 4.0E-20 T 12-10-2018 IPR025048 Protein of unknown function DUF3987) Alide_2610 b8fd9dc909a87b4447faf90a3cdfaa48 330 PIRSF PIRSF016660 31 326 2.1E-112 T 12-10-2018 IPR008526 Inner membrane protein YedI Alide_2610 b8fd9dc909a87b4447faf90a3cdfaa48 330 PIRSF PIRSF016660 1 35 6.4E-8 T 12-10-2018 IPR008526 Inner membrane protein YedI Alide_2610 b8fd9dc909a87b4447faf90a3cdfaa48 330 Pfam PF05661 Protein of unknown function (DUF808) 28 313 2.1E-110 T 12-10-2018 IPR008526 Inner membrane protein YedI Alide_2376 0c86474e877617f8639f4386bc4c2755 320 Gene3D G3DSA:3.40.50.720 96 285 5.1E-112 T 12-10-2018 Alide_2376 0c86474e877617f8639f4386bc4c2755 320 SUPERFAMILY SSF52283 1 135 4.54E-34 T 12-10-2018 Alide_2376 0c86474e877617f8639f4386bc4c2755 320 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 286 1.7E-49 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Alide_2376 0c86474e877617f8639f4386bc4c2755 320 SUPERFAMILY SSF51735 100 287 1.73E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2376 0c86474e877617f8639f4386bc4c2755 320 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 34 316 2.4E-28 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Alide_2376 0c86474e877617f8639f4386bc4c2755 320 Gene3D G3DSA:3.40.50.720 24 315 5.1E-112 T 12-10-2018 Alide_2320 b5ac5ac0596f88f7a47f808a2dfbadd9 455 SUPERFAMILY SSF55874 293 438 2.1E-20 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2320 b5ac5ac0596f88f7a47f808a2dfbadd9 455 Gene3D G3DSA:1.10.287.130 191 304 1.2E-12 T 12-10-2018 Alide_2320 b5ac5ac0596f88f7a47f808a2dfbadd9 455 SMART SM00388 241 303 3.1E-10 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2320 b5ac5ac0596f88f7a47f808a2dfbadd9 455 Gene3D G3DSA:3.30.565.10 306 452 6.3E-17 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2320 b5ac5ac0596f88f7a47f808a2dfbadd9 455 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 302 2.2E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2320 b5ac5ac0596f88f7a47f808a2dfbadd9 455 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 439 9.1E-8 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2320 b5ac5ac0596f88f7a47f808a2dfbadd9 455 SMART SM00387 349 454 4.3E-12 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2320 b5ac5ac0596f88f7a47f808a2dfbadd9 455 SUPERFAMILY SSF47384 226 302 2.75E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_1987 50cb89f6c33f6d40c32814994704ee7b 293 Pfam PF03466 LysR substrate binding domain 89 291 1.5E-34 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1987 50cb89f6c33f6d40c32814994704ee7b 293 Gene3D G3DSA:1.10.10.10 3 89 1.1E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1987 50cb89f6c33f6d40c32814994704ee7b 293 Gene3D G3DSA:3.40.190.290 93 292 1.7E-37 T 12-10-2018 Alide_1987 50cb89f6c33f6d40c32814994704ee7b 293 SUPERFAMILY SSF53850 90 292 1.63E-36 T 12-10-2018 Alide_1987 50cb89f6c33f6d40c32814994704ee7b 293 SUPERFAMILY SSF46785 2 112 2.5E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1987 50cb89f6c33f6d40c32814994704ee7b 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 4.7E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3375 0bdaf7aca2e74c7ff83acc38400cf805 518 SUPERFAMILY SSF52540 337 498 2.19E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3375 0bdaf7aca2e74c7ff83acc38400cf805 518 Gene3D G3DSA:3.40.50.300 335 515 6.3E-32 T 12-10-2018 Alide_3375 0bdaf7aca2e74c7ff83acc38400cf805 518 Pfam PF13671 AAA domain 339 487 1.0E-32 T 12-10-2018 Alide_3375 0bdaf7aca2e74c7ff83acc38400cf805 518 SUPERFAMILY SSF56112 37 313 2.89E-16 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_2529 1e0b9fbf27a1622125443cd82280a69b 110 SUPERFAMILY SSF103481 7 106 2.75E-20 T 12-10-2018 Alide_2529 1e0b9fbf27a1622125443cd82280a69b 110 Gene3D G3DSA:1.10.3730.20 1 110 2.8E-35 T 12-10-2018 Alide_2529 1e0b9fbf27a1622125443cd82280a69b 110 Pfam PF00893 Small Multidrug Resistance protein 4 94 1.0E-27 T 12-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 Alide_3860 9c9096467e13561d5411ae5dda14f2de 146 Pfam PF02561 Flagellar protein FliS 11 128 5.0E-31 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Alide_3860 9c9096467e13561d5411ae5dda14f2de 146 PIRSF PIRSF039090 4 139 1.7E-36 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Alide_3860 9c9096467e13561d5411ae5dda14f2de 146 SUPERFAMILY SSF101116 12 130 2.49E-29 T 12-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 Alide_3860 9c9096467e13561d5411ae5dda14f2de 146 TIGRFAM TIGR00208 fliS: flagellar protein FliS 8 131 2.3E-27 T 12-10-2018 IPR003713 Flagellar protein FliS GO:0044780 Alide_3860 9c9096467e13561d5411ae5dda14f2de 146 Gene3D G3DSA:1.20.120.340 3 134 4.6E-34 T 12-10-2018 Alide_2974 cb5e7dfa059e70ebbb1808a1c14b2243 291 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 280 8.4E-39 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_4018 a29920bb896efa1e1ff0a636a1398628 253 TIGRFAM TIGR03747 conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family 15 253 7.7E-101 T 12-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Alide_4018 a29920bb896efa1e1ff0a636a1398628 253 Pfam PF14348 Domain of unknown function (DUF4400) 51 250 2.4E-75 T 12-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type Alide_1602 deced89e6ffa06a1864bc95e96c937eb 518 Gene3D G3DSA:3.30.300.310 412 514 1.2E-30 T 12-10-2018 Alide_1602 deced89e6ffa06a1864bc95e96c937eb 518 SUPERFAMILY SSF56801 3 513 5.36E-142 T 12-10-2018 Alide_1602 deced89e6ffa06a1864bc95e96c937eb 518 ProSitePatterns PS00455 Putative AMP-binding domain signature. 163 174 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_1602 deced89e6ffa06a1864bc95e96c937eb 518 Pfam PF13193 AMP-binding enzyme C-terminal domain 425 500 1.5E-17 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1602 deced89e6ffa06a1864bc95e96c937eb 518 Gene3D G3DSA:3.40.50.12780 1 409 6.5E-106 T 12-10-2018 Alide_1602 deced89e6ffa06a1864bc95e96c937eb 518 Pfam PF00501 AMP-binding enzyme 16 416 9.5E-92 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_3316 a714abef4ff47fe29346a5942683105e 118 SUPERFAMILY SSF102829 3 67 3.27E-17 T 12-10-2018 IPR036192 Cell division protein ZapA-like superfamily Alide_3316 a714abef4ff47fe29346a5942683105e 118 Pfam PF05164 Cell division protein ZapA 4 103 7.2E-20 T 12-10-2018 IPR007838 Cell division protein ZapA-like Alide_3316 a714abef4ff47fe29346a5942683105e 118 Gene3D G3DSA:1.10.20.30 1 45 4.5E-10 T 12-10-2018 Alide_3208 0341bf0782d9a2ee84b4fd26a188a7a1 171 Pfam PF00691 OmpA family 67 162 2.1E-19 T 12-10-2018 IPR006665 OmpA-like domain Alide_3208 0341bf0782d9a2ee84b4fd26a188a7a1 171 SUPERFAMILY SSF103088 54 168 4.19E-31 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_3208 0341bf0782d9a2ee84b4fd26a188a7a1 171 Gene3D G3DSA:3.30.1330.60 33 170 1.2E-36 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_3208 0341bf0782d9a2ee84b4fd26a188a7a1 171 PRINTS PR01021 OMPA domain signature 113 129 7.1E-11 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_3208 0341bf0782d9a2ee84b4fd26a188a7a1 171 PRINTS PR01021 OMPA domain signature 68 90 7.1E-11 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_3208 0341bf0782d9a2ee84b4fd26a188a7a1 171 PRINTS PR01021 OMPA domain signature 98 113 7.1E-11 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_4447 767c5cbbb4cd198a9d5d47c43512d237 108 Gene3D G3DSA:1.10.10.10 2 67 6.5E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4447 767c5cbbb4cd198a9d5d47c43512d237 108 SUPERFAMILY SSF46689 5 99 1.34E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4447 767c5cbbb4cd198a9d5d47c43512d237 108 Pfam PF01527 Transposase 5 87 8.9E-7 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_0114 ddb2667bd4914ff6ac3a43c493e2143e 399 Gene3D G3DSA:3.40.50.1100 7 305 4.5E-110 T 12-10-2018 Alide_0114 ddb2667bd4914ff6ac3a43c493e2143e 399 Gene3D G3DSA:3.40.50.1100 50 146 4.5E-110 T 12-10-2018 Alide_0114 ddb2667bd4914ff6ac3a43c493e2143e 399 SUPERFAMILY SSF53686 4 310 7.73E-92 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_0114 ddb2667bd4914ff6ac3a43c493e2143e 399 SUPERFAMILY SSF55021 325 391 2.2E-8 T 12-10-2018 Alide_0114 ddb2667bd4914ff6ac3a43c493e2143e 399 Gene3D G3DSA:3.30.70.260 323 396 4.6E-9 T 12-10-2018 Alide_0114 ddb2667bd4914ff6ac3a43c493e2143e 399 Pfam PF13291 ACT domain 324 392 4.4E-9 T 12-10-2018 IPR002912 ACT domain Alide_0114 ddb2667bd4914ff6ac3a43c493e2143e 399 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 301 3.1E-74 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_0114 ddb2667bd4914ff6ac3a43c493e2143e 399 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 21 392 9.4E-130 T 12-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Alide_0150 4af329f3c773e148d04a596f4752db26 385 SUPERFAMILY SSF56645 13 248 8.25E-80 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0150 4af329f3c773e148d04a596f4752db26 385 Gene3D G3DSA:1.10.540.10 5 128 3.4E-35 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0150 4af329f3c773e148d04a596f4752db26 385 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 133 145 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0150 4af329f3c773e148d04a596f4752db26 385 Gene3D G3DSA:1.20.140.10 244 385 6.3E-41 T 12-10-2018 Alide_0150 4af329f3c773e148d04a596f4752db26 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 238 385 9.0E-41 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0150 4af329f3c773e148d04a596f4752db26 385 Gene3D G3DSA:2.40.110.10 130 243 2.7E-39 T 12-10-2018 Alide_0150 4af329f3c773e148d04a596f4752db26 385 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0150 4af329f3c773e148d04a596f4752db26 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 226 1.9E-25 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0150 4af329f3c773e148d04a596f4752db26 385 SUPERFAMILY SSF47203 238 383 2.42E-41 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0150 4af329f3c773e148d04a596f4752db26 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 17 127 2.7E-34 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0091 fc6b441284d200bf1edfd91c0ddb4437 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 323 2.7E-67 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0091 fc6b441284d200bf1edfd91c0ddb4437 328 Gene3D G3DSA:3.40.190.10 132 253 2.7E-94 T 12-10-2018 Alide_0091 fc6b441284d200bf1edfd91c0ddb4437 328 Gene3D G3DSA:3.40.190.150 34 318 2.7E-94 T 12-10-2018 Alide_0091 fc6b441284d200bf1edfd91c0ddb4437 328 SUPERFAMILY SSF53850 120 291 1.0E-10 T 12-10-2018 Alide_0091 fc6b441284d200bf1edfd91c0ddb4437 328 PIRSF PIRSF017082 1 326 1.2E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3756 c676b3e080e40e7613edbda9c88e690b 410 Pfam PF02515 CoA-transferase family III 13 380 4.0E-124 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_3756 c676b3e080e40e7613edbda9c88e690b 410 SUPERFAMILY SSF89796 12 405 3.79E-131 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3756 c676b3e080e40e7613edbda9c88e690b 410 Gene3D G3DSA:3.30.1540.10 240 332 3.7E-130 T 12-10-2018 Alide_3756 c676b3e080e40e7613edbda9c88e690b 410 Gene3D G3DSA:3.40.50.10540 12 399 3.7E-130 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2914 2b73dd451f69f9e8cb201ca1547cdf05 468 Gene3D G3DSA:3.30.1330.120 278 413 3.6E-83 T 12-10-2018 Alide_2914 2b73dd451f69f9e8cb201ca1547cdf05 468 SUPERFAMILY SSF103378 10 460 9.15E-96 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_2914 2b73dd451f69f9e8cb201ca1547cdf05 468 Pfam PF03972 MmgE/PrpD family 14 452 9.4E-91 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_2914 2b73dd451f69f9e8cb201ca1547cdf05 468 Gene3D G3DSA:1.10.4100.10 37 430 3.6E-83 T 12-10-2018 Alide_1929 7acc1feda5f6494b306f1f2d664676cf 414 Gene3D G3DSA:3.40.640.10 37 286 7.9E-186 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_1929 7acc1feda5f6494b306f1f2d664676cf 414 Pfam PF00464 Serine hydroxymethyltransferase 8 381 3.3E-170 T 12-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Alide_1929 7acc1feda5f6494b306f1f2d664676cf 414 SUPERFAMILY SSF53383 6 413 2.34E-177 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_1929 7acc1feda5f6494b306f1f2d664676cf 414 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 414 51.676 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Alide_1929 7acc1feda5f6494b306f1f2d664676cf 414 Gene3D G3DSA:3.90.1150.10 10 391 7.9E-186 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_1929 7acc1feda5f6494b306f1f2d664676cf 414 PIRSF PIRSF000412 1 414 6.4E-166 T 12-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Alide_1929 7acc1feda5f6494b306f1f2d664676cf 414 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 12-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Alide_3483 c7c40007b07eb5623e4b68d48fb4af83 294 Pfam PF00510 Cytochrome c oxidase subunit III 126 293 4.1E-45 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3483 c7c40007b07eb5623e4b68d48fb4af83 294 Pfam PF00510 Cytochrome c oxidase subunit III 13 119 4.1E-11 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3483 c7c40007b07eb5623e4b68d48fb4af83 294 SUPERFAMILY SSF81452 10 294 1.57E-74 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3483 c7c40007b07eb5623e4b68d48fb4af83 294 Gene3D G3DSA:1.20.120.80 77 294 4.6E-65 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3483 c7c40007b07eb5623e4b68d48fb4af83 294 Gene3D G3DSA:1.10.287.70 8 75 2.7E-10 T 12-10-2018 Alide_2827 286a58bdbd98ce0eec0f8ab0af2604e6 330 Gene3D G3DSA:2.60.40.2500 231 326 1.7E-6 T 12-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily Alide_2827 286a58bdbd98ce0eec0f8ab0af2604e6 330 Pfam PF03524 Conjugal transfer protein 104 323 5.9E-65 T 12-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX Alide_2827 286a58bdbd98ce0eec0f8ab0af2604e6 330 TIGRFAM TIGR02775 TrbG_Ti: P-type conjugative transfer protein TrbG 105 312 4.8E-90 T 12-10-2018 IPR014142 P-type conjugative transfer protein TrbG Alide_4344 71f582b8c94fbf5d260e44cbfaba0ff6 446 Gene3D G3DSA:3.40.50.10540 54 440 1.1E-110 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4344 71f582b8c94fbf5d260e44cbfaba0ff6 446 Pfam PF02515 CoA-transferase family III 54 423 4.0E-106 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_4344 71f582b8c94fbf5d260e44cbfaba0ff6 446 Gene3D G3DSA:3.30.1540.10 282 374 1.1E-110 T 12-10-2018 Alide_4344 71f582b8c94fbf5d260e44cbfaba0ff6 446 SUPERFAMILY SSF89796 52 446 1.18E-114 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4061 796e1fd2b73a811202a6a642904de3d2 327 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 326 26.756 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 Alide_4061 796e1fd2b73a811202a6a642904de3d2 327 Gene3D G3DSA:3.90.650.10 143 327 1.2E-51 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_4061 796e1fd2b73a811202a6a642904de3d2 327 Pfam PF02769 AIR synthase related protein, C-terminal domain 182 309 4.8E-9 T 12-10-2018 IPR010918 PurM-like, C-terminal domain Alide_4061 796e1fd2b73a811202a6a642904de3d2 327 SUPERFAMILY SSF56042 141 310 3.66E-35 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_4061 796e1fd2b73a811202a6a642904de3d2 327 SUPERFAMILY SSF55326 2 136 1.64E-34 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_4061 796e1fd2b73a811202a6a642904de3d2 327 Pfam PF00586 AIR synthase related protein, N-terminal domain 27 136 1.1E-24 T 12-10-2018 IPR016188 PurM-like, N-terminal domain Alide_4061 796e1fd2b73a811202a6a642904de3d2 327 Gene3D G3DSA:3.30.1330.10 1 142 2.4E-48 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_4061 796e1fd2b73a811202a6a642904de3d2 327 PIRSF PIRSF005303 1 326 2.4E-77 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 Alide_4061 796e1fd2b73a811202a6a642904de3d2 327 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 2 326 1.3E-95 T 12-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 Alide_2832 e2ce27eb3a5bbfd9f0b92629466259cd 819 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 181 388 3.9E-16 T 12-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 Alide_2832 e2ce27eb3a5bbfd9f0b92629466259cd 819 Gene3D G3DSA:3.40.50.300 417 502 8.3E-6 T 12-10-2018 Alide_2832 e2ce27eb3a5bbfd9f0b92629466259cd 819 Gene3D G3DSA:3.40.50.300 558 759 5.6E-26 T 12-10-2018 Alide_2832 e2ce27eb3a5bbfd9f0b92629466259cd 819 SMART SM00382 440 704 4.0E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2832 e2ce27eb3a5bbfd9f0b92629466259cd 819 SUPERFAMILY SSF52540 397 738 7.23E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 3.4E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 3.4E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 3.4E-12 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.3E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.3E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.3E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.3E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.3E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.3E-36 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 SUPERFAMILY SSF51735 8 252 1.35E-70 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 Gene3D G3DSA:3.40.50.720 1 255 3.8E-75 T 12-10-2018 Alide_0368 3dd71bfd160cfecdcdb9ece446d39b09 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 250 1.6E-53 T 12-10-2018 Alide_0260 0c53782cfccdf7f3eb1cfd70742712ca 398 Gene3D G3DSA:3.40.50.2300 143 364 1.4E-124 T 12-10-2018 Alide_0260 0c53782cfccdf7f3eb1cfd70742712ca 398 Gene3D G3DSA:3.40.50.2300 44 356 1.4E-124 T 12-10-2018 Alide_0260 0c53782cfccdf7f3eb1cfd70742712ca 398 SUPERFAMILY SSF53822 38 382 2.73E-85 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_0260 0c53782cfccdf7f3eb1cfd70742712ca 398 Pfam PF13458 Periplasmic binding protein 40 363 1.9E-73 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_0260 0c53782cfccdf7f3eb1cfd70742712ca 398 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 46 62 1.2E-8 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_0260 0c53782cfccdf7f3eb1cfd70742712ca 398 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 333 348 1.2E-8 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_0260 0c53782cfccdf7f3eb1cfd70742712ca 398 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 257 275 1.2E-8 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_0260 0c53782cfccdf7f3eb1cfd70742712ca 398 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 65 83 1.2E-8 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 2.9E-46 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 Gene3D G3DSA:2.170.280.10 178 393 2.5E-145 T 12-10-2018 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 Gene3D G3DSA:1.20.1330.10 45 445 2.5E-145 T 12-10-2018 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 SUPERFAMILY SSF64518 1 486 6.02E-107 T 12-10-2018 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 Pfam PF00700 Bacterial flagellin C-terminal helical region 401 485 6.1E-27 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 Pfam PF07196 Flagellin hook IN motif 199 241 1.4E-7 T 12-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 Gene3D G3DSA:2.30.220.10 188 277 2.5E-145 T 12-10-2018 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 PRINTS PR00207 Flagellin signature 76 95 3.2E-25 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 PRINTS PR00207 Flagellin signature 37 54 3.2E-25 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 PRINTS PR00207 Flagellin signature 111 134 3.2E-25 T 12-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Alide_3862 cda642a2e875beb8c76212c14adf8c7f 486 Gene3D G3DSA:1.20.58.1830 5 485 2.5E-145 T 12-10-2018 Alide_0362 39ba27ca3caca5cf8ed9376625d9ddaf 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 311 4.5E-43 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 Gene3D G3DSA:3.40.190.10 94 287 7.5E-32 T 12-10-2018 Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 Gene3D G3DSA:1.10.10.10 1 93 5.0E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 Pfam PF03466 LysR substrate binding domain 87 289 2.0E-34 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 SUPERFAMILY SSF53850 88 292 3.41E-32 T 12-10-2018 Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 SUPERFAMILY SSF46785 2 87 6.56E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.5E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.5E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.5E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.3E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2839 0bb5fbd652ec33951dcd40d191cf370b 308 Gene3D G3DSA:3.40.190.10 163 268 7.5E-32 T 12-10-2018 Alide_1123 33d8414056c9b4da04dc7bf36322e05f 263 SUPERFAMILY SSF51161 3 172 1.05E-53 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily Alide_1123 33d8414056c9b4da04dc7bf36322e05f 263 Gene3D G3DSA:2.160.10.10 67 188 1.3E-33 T 12-10-2018 Alide_1123 33d8414056c9b4da04dc7bf36322e05f 263 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 2.9E-6 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_1123 33d8414056c9b4da04dc7bf36322e05f 263 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 152 1.9E-6 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_1123 33d8414056c9b4da04dc7bf36322e05f 263 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 167 6.2E-71 T 12-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 Alide_1123 33d8414056c9b4da04dc7bf36322e05f 263 Gene3D G3DSA:1.10.3130.10 1 66 2.6E-21 T 12-10-2018 Alide_3818 a8b0799edb22730c65ea39d648f7f5b8 131 Gene3D G3DSA:3.10.450.50 8 131 2.0E-34 T 12-10-2018 Alide_3818 a8b0799edb22730c65ea39d648f7f5b8 131 SUPERFAMILY SSF54427 32 130 1.42E-34 T 12-10-2018 IPR032710 NTF2-like domain superfamily Alide_3818 a8b0799edb22730c65ea39d648f7f5b8 131 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 6 129 26.669 T 12-10-2018 IPR023006 Uncharacterised protein family UPF0225 Alide_3980 a8eec8a188b5b56ade2928f4355ebbce 174 Pfam PF00210 Ferritin-like domain 34 173 5.7E-28 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Alide_3980 a8eec8a188b5b56ade2928f4355ebbce 174 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 54 70 2.8E-10 T 12-10-2018 IPR002177 DNA-binding protein Dps Alide_3980 a8eec8a188b5b56ade2928f4355ebbce 174 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 78 94 2.8E-10 T 12-10-2018 IPR002177 DNA-binding protein Dps Alide_3980 a8eec8a188b5b56ade2928f4355ebbce 174 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 150 168 2.8E-10 T 12-10-2018 IPR002177 DNA-binding protein Dps Alide_3980 a8eec8a188b5b56ade2928f4355ebbce 174 PIRSF PIRSF005900 12 174 4.4E-43 T 12-10-2018 IPR002177 DNA-binding protein Dps Alide_3980 a8eec8a188b5b56ade2928f4355ebbce 174 Gene3D G3DSA:1.20.1260.10 1 174 6.1E-57 T 12-10-2018 IPR012347 Ferritin-like Alide_3980 a8eec8a188b5b56ade2928f4355ebbce 174 SUPERFAMILY SSF47240 21 173 7.38E-50 T 12-10-2018 IPR009078 Ferritin-like superfamily Alide_3980 a8eec8a188b5b56ade2928f4355ebbce 174 ProSitePatterns PS00819 Dps protein family signature 2. 80 94 - T 12-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 Alide_1886 7b00027e3a43afe848586bc63cd31a77 88 SUPERFAMILY SSF47598 2 79 6.67E-22 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Alide_1886 7b00027e3a43afe848586bc63cd31a77 88 Gene3D G3DSA:1.20.5.780 1 82 2.1E-14 T 12-10-2018 Alide_1886 7b00027e3a43afe848586bc63cd31a77 88 Pfam PF08681 Protein of unknown function (DUF1778) 6 80 1.0E-25 T 12-10-2018 IPR014795 Vibrio phage ICP1, Orf50 Alide_0338 a108cd9b811a80774200c7a88efd0262 304 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 304 151.311 T 12-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 Alide_0338 a108cd9b811a80774200c7a88efd0262 304 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 131 268 6.6E-66 T 12-10-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 Alide_0338 a108cd9b811a80774200c7a88efd0262 304 SUPERFAMILY SSF55347 131 269 1.11E-60 T 12-10-2018 Alide_0338 a108cd9b811a80774200c7a88efd0262 304 SUPERFAMILY SSF51735 1 155 4.27E-30 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0338 a108cd9b811a80774200c7a88efd0262 304 Gene3D G3DSA:3.40.50.720 8 286 2.4E-126 T 12-10-2018 Alide_0338 a108cd9b811a80774200c7a88efd0262 304 SMART SM00859 6 121 7.9E-6 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Alide_0338 a108cd9b811a80774200c7a88efd0262 304 Gene3D G3DSA:3.30.360.10 131 274 2.4E-126 T 12-10-2018 Alide_0338 a108cd9b811a80774200c7a88efd0262 304 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 117 1.7E-12 T 12-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Alide_0338 a108cd9b811a80774200c7a88efd0262 304 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 4 293 4.2E-145 T 12-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 Alide_0338 a108cd9b811a80774200c7a88efd0262 304 PIRSF PIRSF015689 1 298 6.1E-135 T 12-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 Gene3D G3DSA:2.40.160.10 22 351 4.9E-77 T 12-10-2018 IPR023614 Porin domain superfamily Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 PRINTS PR00184 Neisseria sp. porin signature 54 79 1.9E-5 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 PRINTS PR00184 Neisseria sp. porin signature 296 320 1.9E-5 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 PRINTS PR00184 Neisseria sp. porin signature 147 164 1.9E-5 T 12-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 1.7E-5 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 299 316 1.7E-5 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 162 173 1.7E-5 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 201 213 1.7E-5 T 12-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 Pfam PF13609 Gram-negative porin 14 324 1.1E-48 T 12-10-2018 Alide_2909 e2e8a72f66b481a82c3a160aa484679d 351 SUPERFAMILY SSF56935 22 351 2.96E-72 T 12-10-2018 Alide_3147 ccc788e737c11cc8d052d7dea1d3bc03 422 SUPERFAMILY SSF53686 7 399 3.93E-144 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_3147 ccc788e737c11cc8d052d7dea1d3bc03 422 Gene3D G3DSA:3.40.50.1100 58 394 5.0E-185 T 12-10-2018 Alide_3147 ccc788e737c11cc8d052d7dea1d3bc03 422 PIRSF PIRSF001413 2 407 4.4E-163 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_3147 ccc788e737c11cc8d052d7dea1d3bc03 422 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 58 388 1.3E-49 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_3147 ccc788e737c11cc8d052d7dea1d3bc03 422 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 11 399 1.2E-187 T 12-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_3147 ccc788e737c11cc8d052d7dea1d3bc03 422 Gene3D G3DSA:3.40.50.1100 14 210 5.0E-185 T 12-10-2018 Alide_3147 ccc788e737c11cc8d052d7dea1d3bc03 422 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 85 99 - T 12-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_3147 ccc788e737c11cc8d052d7dea1d3bc03 422 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 6 401 52.11 T 12-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Alide_0404 b7c02775877c7081fd8096a4a8e806a2 211 SUPERFAMILY SSF53474 3 208 2.75E-38 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0404 b7c02775877c7081fd8096a4a8e806a2 211 Gene3D G3DSA:3.40.50.1820 1 210 4.1E-47 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0404 b7c02775877c7081fd8096a4a8e806a2 211 Pfam PF12146 Serine aminopeptidase, S33 49 140 1.3E-6 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 Alide_1867 dbaa6e60d45a8d7f04816c4c2e74fbee 92 Gene3D G3DSA:1.10.260.40 1 81 1.3E-13 T 12-10-2018 Alide_1867 dbaa6e60d45a8d7f04816c4c2e74fbee 92 SUPERFAMILY SSF47413 1 65 5.38E-11 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_1867 dbaa6e60d45a8d7f04816c4c2e74fbee 92 SMART SM00530 6 62 1.4E-7 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_1867 dbaa6e60d45a8d7f04816c4c2e74fbee 92 Pfam PF12844 Helix-turn-helix domain 4 60 4.9E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_2918 1c03af92fc66c9f2b47e824690e1ec20 356 Pfam PF00107 Zinc-binding dehydrogenase 191 314 1.0E-27 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_2918 1c03af92fc66c9f2b47e824690e1ec20 356 SUPERFAMILY SSF50129 1 188 2.52E-44 T 12-10-2018 IPR011032 GroES-like superfamily Alide_2918 1c03af92fc66c9f2b47e824690e1ec20 356 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 74 88 - T 12-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Alide_2918 1c03af92fc66c9f2b47e824690e1ec20 356 SMART SM00829 8 354 4.9E-5 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_2918 1c03af92fc66c9f2b47e824690e1ec20 356 SUPERFAMILY SSF51735 154 322 1.51E-40 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2918 1c03af92fc66c9f2b47e824690e1ec20 356 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 149 9.3E-25 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_2918 1c03af92fc66c9f2b47e824690e1ec20 356 Gene3D G3DSA:3.90.180.10 1 356 5.0E-89 T 12-10-2018 Alide_1327 d9be93a29a1929ea7aea8b60d6840828 333 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 58 328 1.9E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1327 d9be93a29a1929ea7aea8b60d6840828 333 Gene3D G3DSA:3.40.190.150 40 323 8.8E-100 T 12-10-2018 Alide_1327 d9be93a29a1929ea7aea8b60d6840828 333 Gene3D G3DSA:3.40.190.10 135 258 8.8E-100 T 12-10-2018 Alide_1327 d9be93a29a1929ea7aea8b60d6840828 333 PIRSF PIRSF017082 1 332 1.5E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1327 d9be93a29a1929ea7aea8b60d6840828 333 SUPERFAMILY SSF53850 56 247 2.14E-7 T 12-10-2018 Alide_0053 9336081585b37d5ab96ace435435767a 180 Gene3D G3DSA:3.40.50.1820 1 179 1.5E-51 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0053 9336081585b37d5ab96ace435435767a 180 Pfam PF06821 Serine hydrolase 6 174 1.8E-59 T 12-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 Alide_0053 9336081585b37d5ab96ace435435767a 180 SUPERFAMILY SSF53474 5 171 2.06E-31 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 SUPERFAMILY SSF47384 241 312 3.14E-11 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 Pfam PF00672 HAMP domain 200 250 4.4E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 312 2.3E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 464 1.4E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 SMART SM00304 200 254 5.5E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 SMART SM00387 352 467 4.3E-21 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 Gene3D G3DSA:3.30.450.300 52 177 1.7E-43 T 12-10-2018 IPR038421 Sensor histidine kinase RisS, periplasmic domain superfamily Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 Gene3D G3DSA:3.30.565.10 314 468 3.2E-28 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 Pfam PF16524 Periplasmic domain of Sensor histidine kinase RisS 68 172 7.8E-37 T 12-10-2018 IPR032408 Sensor histidine kinase RisS, periplasmic domain Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 3.6E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 421 3.6E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 445 3.6E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 SUPERFAMILY SSF55874 304 463 1.08E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 Gene3D G3DSA:1.10.287.130 198 309 2.7E-19 T 12-10-2018 Alide_1312 8c9dd6809f1cbecbdc066b1b43ab920a 501 SMART SM00388 255 314 2.2E-7 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_1690 5083f9fab857bac9527d0e4f74bd245b 298 Gene3D G3DSA:3.40.50.450 23 296 5.5E-67 T 12-10-2018 Alide_1690 5083f9fab857bac9527d0e4f74bd245b 298 SUPERFAMILY SSF102405 81 291 3.53E-34 T 12-10-2018 Alide_1690 5083f9fab857bac9527d0e4f74bd245b 298 Pfam PF02481 DNA recombination-mediator protein A 75 282 1.7E-59 T 12-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Alide_4153 ddf64180e38c95df28e0c98a15f3ac17 255 Gene3D G3DSA:3.40.50.1580 1 249 5.0E-59 T 12-10-2018 Alide_4153 ddf64180e38c95df28e0c98a15f3ac17 255 SUPERFAMILY SSF53167 1 252 1.83E-57 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Alide_4153 ddf64180e38c95df28e0c98a15f3ac17 255 Pfam PF01048 Phosphorylase superfamily 5 251 5.7E-46 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Alide_3633 9c73270a0311ffcf643ed0c61f20becf 134 SMART SM00448 10 123 3.2E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3633 9c73270a0311ffcf643ed0c61f20becf 134 Pfam PF00072 Response regulator receiver domain 12 124 9.2E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3633 9c73270a0311ffcf643ed0c61f20becf 134 Gene3D G3DSA:3.40.50.12740 9 133 4.5E-38 T 12-10-2018 Alide_3633 9c73270a0311ffcf643ed0c61f20becf 134 SUPERFAMILY SSF52172 9 127 1.31E-35 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3996 1e33b56062d1c92d1af6b26149b04c01 291 Pfam PF13614 AAA domain 1 168 1.1E-25 T 12-10-2018 IPR025669 AAA domain Alide_3996 1e33b56062d1c92d1af6b26149b04c01 291 SUPERFAMILY SSF52540 1 265 1.32E-43 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3996 1e33b56062d1c92d1af6b26149b04c01 291 Gene3D G3DSA:3.40.50.300 1 272 1.5E-48 T 12-10-2018 Alide_2388 b3dbb1439c07983cdc6133b932087231 412 Gene3D G3DSA:1.10.287.470 113 186 2.9E-106 T 12-10-2018 Alide_2388 b3dbb1439c07983cdc6133b932087231 412 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 54 390 7.9E-80 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_2388 b3dbb1439c07983cdc6133b932087231 412 SUPERFAMILY SSF111369 66 315 5.23E-78 T 12-10-2018 Alide_2388 b3dbb1439c07983cdc6133b932087231 412 Gene3D G3DSA:2.40.30.170 66 318 2.9E-106 T 12-10-2018 Alide_2388 b3dbb1439c07983cdc6133b932087231 412 Gene3D G3DSA:2.40.50.100 78 222 2.9E-106 T 12-10-2018 Alide_2388 b3dbb1439c07983cdc6133b932087231 412 Pfam PF13533 Biotin-lipoyl like 80 127 3.7E-12 T 12-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Alide_2388 b3dbb1439c07983cdc6133b932087231 412 Gene3D G3DSA:2.40.420.20 319 388 2.9E-106 T 12-10-2018 Alide_1658 27223ac1e3a2e92065afbf286270d52e 395 Pfam PF13191 AAA ATPase domain 19 202 7.2E-11 T 12-10-2018 Alide_1658 27223ac1e3a2e92065afbf286270d52e 395 Gene3D G3DSA:3.40.50.300 14 224 8.5E-15 T 12-10-2018 Alide_1658 27223ac1e3a2e92065afbf286270d52e 395 SUPERFAMILY SSF52540 6 294 1.14E-22 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1159 45de9003decc71588b0a1bdf5226da7e 162 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 10 154 7.6E-21 T 12-10-2018 IPR009936 Protein of unknown function DUF1468 Alide_2101 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF01609 Transposase DDE domain 187 347 6.6E-16 T 12-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Alide_2101 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF05598 Transposase domain (DUF772) 53 128 4.4E-26 T 12-10-2018 IPR008490 Transposase InsH, N-terminal Alide_4140 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF01609 Transposase DDE domain 187 347 6.6E-16 T 12-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Alide_4140 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF05598 Transposase domain (DUF772) 53 128 4.4E-26 T 12-10-2018 IPR008490 Transposase InsH, N-terminal Alide_2466 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF01609 Transposase DDE domain 187 347 6.6E-16 T 12-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Alide_2466 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF05598 Transposase domain (DUF772) 53 128 4.4E-26 T 12-10-2018 IPR008490 Transposase InsH, N-terminal Alide_0159 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF01609 Transposase DDE domain 187 347 6.6E-16 T 12-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Alide_0159 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF05598 Transposase domain (DUF772) 53 128 4.4E-26 T 12-10-2018 IPR008490 Transposase InsH, N-terminal Alide_1418 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF01609 Transposase DDE domain 187 347 6.6E-16 T 12-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Alide_1418 b68a8461df63aac8e58b2eb4a61dbdae 362 Pfam PF05598 Transposase domain (DUF772) 53 128 4.4E-26 T 12-10-2018 IPR008490 Transposase InsH, N-terminal Alide_4467 d58e06aecb0e4e0a09cfb432d1d70ab6 220 Gene3D G3DSA:3.40.30.10 40 215 3.9E-38 T 12-10-2018 Alide_4467 d58e06aecb0e4e0a09cfb432d1d70ab6 220 SUPERFAMILY SSF52833 44 216 7.41E-34 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_4467 d58e06aecb0e4e0a09cfb432d1d70ab6 220 Pfam PF00578 AhpC/TSA family 49 193 1.6E-32 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Alide_2912 09ffc519b1361522b08884d18f6c4c0d 497 Gene3D G3DSA:3.40.309.10 274 463 6.0E-186 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_2912 09ffc519b1361522b08884d18f6c4c0d 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 269 276 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_2912 09ffc519b1361522b08884d18f6c4c0d 497 SUPERFAMILY SSF53720 24 496 5.24E-172 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_2912 09ffc519b1361522b08884d18f6c4c0d 497 Gene3D G3DSA:3.40.605.10 29 491 6.0E-186 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_2912 09ffc519b1361522b08884d18f6c4c0d 497 Pfam PF00171 Aldehyde dehydrogenase family 33 493 1.1E-175 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_2926 51eb5c596d168fcdb748aac93057a6ed 399 Pfam PF02515 CoA-transferase family III 11 375 6.1E-110 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2926 51eb5c596d168fcdb748aac93057a6ed 399 SUPERFAMILY SSF89796 5 399 2.49E-126 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2926 51eb5c596d168fcdb748aac93057a6ed 399 Gene3D G3DSA:3.30.1540.10 236 329 6.1E-121 T 12-10-2018 Alide_2926 51eb5c596d168fcdb748aac93057a6ed 399 Gene3D G3DSA:3.40.50.10540 10 393 6.1E-121 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3435 fc1fdd917bf4d1f4d7325f341466cf38 151 Pfam PF02556 Preprotein translocase subunit SecB 4 141 1.8E-54 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Alide_3435 fc1fdd917bf4d1f4d7325f341466cf38 151 SUPERFAMILY SSF54611 5 139 6.32E-50 T 12-10-2018 IPR035958 SecB-like superfamily Alide_3435 fc1fdd917bf4d1f4d7325f341466cf38 151 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 4 141 1.3E-47 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Alide_3435 fc1fdd917bf4d1f4d7325f341466cf38 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 95 117 1.9E-29 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Alide_3435 fc1fdd917bf4d1f4d7325f341466cf38 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 11 28 1.9E-29 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Alide_3435 fc1fdd917bf4d1f4d7325f341466cf38 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 71 91 1.9E-29 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Alide_3435 fc1fdd917bf4d1f4d7325f341466cf38 151 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 121 139 1.9E-29 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Alide_3435 fc1fdd917bf4d1f4d7325f341466cf38 151 Gene3D G3DSA:3.10.420.10 1 151 6.5E-53 T 12-10-2018 IPR035958 SecB-like superfamily Alide_3435 fc1fdd917bf4d1f4d7325f341466cf38 151 Hamap MF_00821 Protein-export protein SecB [secB]. 1 143 30.071 T 12-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Alide_3333 58d890add3c26b8f74952ad35b29a60b 273 Gene3D G3DSA:1.10.12.10 251 273 2.0E-5 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3333 58d890add3c26b8f74952ad35b29a60b 273 SUPERFAMILY SSF52096 16 273 3.37E-57 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3333 58d890add3c26b8f74952ad35b29a60b 273 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_3333 58d890add3c26b8f74952ad35b29a60b 273 Gene3D G3DSA:3.90.226.10 14 250 3.1E-54 T 12-10-2018 Alide_3333 58d890add3c26b8f74952ad35b29a60b 273 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 273 1.4E-38 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_1210 407f130440e6781554227297bce2701b 552 SUPERFAMILY SSF52091 448 548 2.16E-14 T 12-10-2018 IPR036513 STAS domain superfamily Alide_1210 407f130440e6781554227297bce2701b 552 Gene3D G3DSA:3.30.750.24 439 551 3.7E-21 T 12-10-2018 IPR036513 STAS domain superfamily Alide_1210 407f130440e6781554227297bce2701b 552 Pfam PF00916 Sulfate permease family 26 387 1.8E-88 T 12-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Alide_1210 407f130440e6781554227297bce2701b 552 Pfam PF01740 STAS domain 474 545 2.7E-9 T 12-10-2018 IPR002645 STAS domain Alide_3940 8a973fed832b1ea1a86d24afb7f38f67 322 Gene3D G3DSA:3.40.190.10 124 247 8.0E-110 T 12-10-2018 Alide_3940 8a973fed832b1ea1a86d24afb7f38f67 322 PIRSF PIRSF017082 1 321 9.3E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3940 8a973fed832b1ea1a86d24afb7f38f67 322 SUPERFAMILY SSF53850 107 280 9.52E-19 T 12-10-2018 Alide_3940 8a973fed832b1ea1a86d24afb7f38f67 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 317 2.1E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3940 8a973fed832b1ea1a86d24afb7f38f67 322 Gene3D G3DSA:3.40.190.150 26 311 8.0E-110 T 12-10-2018 Alide_0713 08064fb950ff60af155cfcef7414d9fc 460 Gene3D G3DSA:3.10.450.350 196 426 3.3E-94 T 12-10-2018 Alide_0713 08064fb950ff60af155cfcef7414d9fc 460 Gene3D G3DSA:2.70.70.10 294 422 3.3E-94 T 12-10-2018 IPR011055 Duplicated hybrid motif Alide_0713 08064fb950ff60af155cfcef7414d9fc 460 Gene3D G3DSA:3.10.450.350 86 178 5.6E-7 T 12-10-2018 Alide_0713 08064fb950ff60af155cfcef7414d9fc 460 Pfam PF01551 Peptidase family M23 322 416 4.5E-33 T 12-10-2018 IPR016047 Peptidase M23 Alide_0713 08064fb950ff60af155cfcef7414d9fc 460 SUPERFAMILY SSF51261 170 418 1.1E-69 T 12-10-2018 IPR011055 Duplicated hybrid motif Alide_3684 ab16ec143ebd4f874a5ee74854945a7a 238 Gene3D G3DSA:1.10.3810.10 47 237 2.8E-55 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3684 ab16ec143ebd4f874a5ee74854945a7a 238 SUPERFAMILY SSF53955 55 234 3.37E-56 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_3684 ab16ec143ebd4f874a5ee74854945a7a 238 Pfam PF00912 Transglycosylase 57 232 2.1E-54 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3684 ab16ec143ebd4f874a5ee74854945a7a 238 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 7 237 1.2E-77 T 12-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3684 ab16ec143ebd4f874a5ee74854945a7a 238 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 3 238 38.291 T 12-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_4394 af8acbd255fb8e922b9659e1ac32428a 144 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 74 4.3E-24 T 12-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Alide_4394 af8acbd255fb8e922b9659e1ac32428a 144 Gene3D G3DSA:3.30.70.330 1 101 2.4E-32 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Alide_4394 af8acbd255fb8e922b9659e1ac32428a 144 SUPERFAMILY SSF54928 3 113 7.52E-37 T 12-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 Alide_4394 af8acbd255fb8e922b9659e1ac32428a 144 SMART SM00360 4 77 8.3E-31 T 12-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Alide_0195 5acac8c1f3dcfa057ff8cff2447717f0 406 Pfam PF02515 CoA-transferase family III 5 381 3.8E-125 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0195 5acac8c1f3dcfa057ff8cff2447717f0 406 Gene3D G3DSA:3.30.1540.10 243 334 1.5E-136 T 12-10-2018 Alide_0195 5acac8c1f3dcfa057ff8cff2447717f0 406 SUPERFAMILY SSF89796 4 406 6.8E-133 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0195 5acac8c1f3dcfa057ff8cff2447717f0 406 Gene3D G3DSA:3.40.50.10540 5 398 1.5E-136 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2476 00a23b5b11f13b842f2be6012d4c18f7 293 Gene3D G3DSA:2.60.120.10 5 245 1.8E-62 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_2476 00a23b5b11f13b842f2be6012d4c18f7 293 SUPERFAMILY SSF51182 16 282 4.18E-71 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_2476 00a23b5b11f13b842f2be6012d4c18f7 293 Pfam PF05726 Pirin C-terminal cupin domain 172 269 5.3E-16 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 Alide_2476 00a23b5b11f13b842f2be6012d4c18f7 293 PIRSF PIRSF006232 1 281 1.0E-73 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Alide_2476 00a23b5b11f13b842f2be6012d4c18f7 293 Pfam PF02678 Pirin 20 120 1.5E-30 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Alide_2340 44cfb244ebeb33a20bb9b363eabff13b 345 Gene3D G3DSA:3.40.50.970 3 202 7.9E-81 T 12-10-2018 Alide_2340 44cfb244ebeb33a20bb9b363eabff13b 345 Pfam PF02779 Transketolase, pyrimidine binding domain 5 178 1.3E-46 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_2340 44cfb244ebeb33a20bb9b363eabff13b 345 SUPERFAMILY SSF52518 4 214 3.09E-67 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2340 44cfb244ebeb33a20bb9b363eabff13b 345 SMART SM00861 6 181 4.9E-60 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_2340 44cfb244ebeb33a20bb9b363eabff13b 345 Pfam PF02780 Transketolase, C-terminal domain 204 327 2.8E-35 T 12-10-2018 IPR033248 Transketolase, C-terminal domain Alide_2340 44cfb244ebeb33a20bb9b363eabff13b 345 SUPERFAMILY SSF52922 201 335 2.09E-38 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2340 44cfb244ebeb33a20bb9b363eabff13b 345 Gene3D G3DSA:3.40.50.920 203 337 4.5E-45 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_0025 4036fbf45274eb5a7e0e47cd203883e7 321 PIRSF PIRSF017082 1 321 2.1E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0025 4036fbf45274eb5a7e0e47cd203883e7 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 316 2.1E-95 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0025 4036fbf45274eb5a7e0e47cd203883e7 321 Gene3D G3DSA:3.40.190.150 26 311 1.1E-119 T 12-10-2018 Alide_0025 4036fbf45274eb5a7e0e47cd203883e7 321 SUPERFAMILY SSF53850 108 282 1.19E-11 T 12-10-2018 Alide_0025 4036fbf45274eb5a7e0e47cd203883e7 321 Gene3D G3DSA:3.40.190.10 123 246 1.1E-119 T 12-10-2018 Alide_3193 df072404db58f0ea558a257a7b205683 123 SUPERFAMILY SSF50022 8 112 2.1E-22 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Alide_3193 df072404db58f0ea558a257a7b205683 123 Gene3D G3DSA:2.102.10.10 16 117 3.2E-15 T 12-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 Alide_3193 df072404db58f0ea558a257a7b205683 123 Pfam PF00355 Rieske [2Fe-2S] domain 38 101 6.4E-10 T 12-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Alide_3343 c25cd1f27966cb207e66918fdec29f7e 100 SUPERFAMILY SSF46626 23 99 5.91E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3343 c25cd1f27966cb207e66918fdec29f7e 100 Gene3D G3DSA:1.10.760.10 21 100 1.6E-32 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3343 c25cd1f27966cb207e66918fdec29f7e 100 PRINTS PR00606 Class ID cytochrome C signature 88 98 1.7E-17 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Alide_3343 c25cd1f27966cb207e66918fdec29f7e 100 PRINTS PR00606 Class ID cytochrome C signature 76 86 1.7E-17 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Alide_3343 c25cd1f27966cb207e66918fdec29f7e 100 PRINTS PR00606 Class ID cytochrome C signature 24 37 1.7E-17 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Alide_3343 c25cd1f27966cb207e66918fdec29f7e 100 PRINTS PR00606 Class ID cytochrome C signature 39 52 1.7E-17 T 12-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 Alide_3343 c25cd1f27966cb207e66918fdec29f7e 100 Pfam PF00034 Cytochrome c 27 100 3.8E-6 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3983 6a7dc4257b3f4d3ff29ce55c75c67cce 421 TIGRFAM TIGR00277 HDIG: HDIG domain 174 265 5.8E-10 T 12-10-2018 IPR006675 HDIG domain Alide_3983 6a7dc4257b3f4d3ff29ce55c75c67cce 421 SMART SM00471 170 305 1.1E-11 T 12-10-2018 IPR003607 HD/PDEase domain Alide_3983 6a7dc4257b3f4d3ff29ce55c75c67cce 421 SUPERFAMILY SSF109604 169 335 1.73E-33 T 12-10-2018 Alide_3983 6a7dc4257b3f4d3ff29ce55c75c67cce 421 Pfam PF01966 HD domain 175 295 3.6E-17 T 12-10-2018 IPR006674 HD domain Alide_3983 6a7dc4257b3f4d3ff29ce55c75c67cce 421 Pfam PF11871 Domain of unknown function (DUF3391) 2 141 2.3E-35 T 12-10-2018 IPR021812 Protein of unknown function DUF3391 Alide_3983 6a7dc4257b3f4d3ff29ce55c75c67cce 421 Gene3D G3DSA:1.10.3210.10 34 337 2.3E-73 T 12-10-2018 Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 Gene3D G3DSA:3.10.580.10 205 330 1.4E-41 T 12-10-2018 Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 SMART SM00116 284 332 0.0085 T 12-10-2018 IPR000644 CBS domain Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 SMART SM00116 219 267 0.0066 T 12-10-2018 IPR000644 CBS domain Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 Gene3D G3DSA:3.40.50.10490 12 204 2.7E-63 T 12-10-2018 Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 Pfam PF00571 CBS domain 278 330 3.4E-7 T 12-10-2018 IPR000644 CBS domain Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 Pfam PF00571 CBS domain 210 266 1.8E-8 T 12-10-2018 IPR000644 CBS domain Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 Pfam PF01380 SIS domain 50 181 1.6E-31 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 SUPERFAMILY SSF53697 19 330 1.31E-64 T 12-10-2018 Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 54 323 1.4E-107 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Alide_4398 124f4f8220c1d85a91d835ec2948cc88 333 PIRSF PIRSF004692 4 333 9.8E-129 T 12-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Alide_3233 ba63a52e7ff9c8c9d2deee7ef162945e 146 Pfam PF05425 Copper resistance protein D 45 136 3.9E-11 T 12-10-2018 IPR008457 Copper resistance protein D GO:0016021 Alide_3678 76f0cadb7392939c4affe945b7e9997c 137 Gene3D G3DSA:1.10.760.10 13 127 6.2E-36 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3678 76f0cadb7392939c4affe945b7e9997c 137 Pfam PF00034 Cytochrome c 33 126 1.2E-6 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3678 76f0cadb7392939c4affe945b7e9997c 137 SUPERFAMILY SSF46626 30 127 1.33E-29 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3678 76f0cadb7392939c4affe945b7e9997c 137 PRINTS PR00604 Class IA and IB cytochrome C signature 41 48 6.6E-15 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3678 76f0cadb7392939c4affe945b7e9997c 137 PRINTS PR00604 Class IA and IB cytochrome C signature 82 98 6.6E-15 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3678 76f0cadb7392939c4affe945b7e9997c 137 PRINTS PR00604 Class IA and IB cytochrome C signature 118 126 6.6E-15 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3678 76f0cadb7392939c4affe945b7e9997c 137 PRINTS PR00604 Class IA and IB cytochrome C signature 101 111 6.6E-15 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3678 76f0cadb7392939c4affe945b7e9997c 137 PRINTS PR00604 Class IA and IB cytochrome C signature 51 66 6.6E-15 T 12-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0044 fd03f54c56f292e5d2fc86da6b05d1c4 371 SUPERFAMILY SSF51395 1 369 6.48E-120 T 12-10-2018 Alide_0044 fd03f54c56f292e5d2fc86da6b05d1c4 371 Gene3D G3DSA:3.20.20.70 1 371 3.9E-149 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0044 fd03f54c56f292e5d2fc86da6b05d1c4 371 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 348 5.2E-82 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Alide_2522 f87285c27e4fb9dc8953ce3f31fd10cf 136 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 134 9.6E-33 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Alide_2522 f87285c27e4fb9dc8953ce3f31fd10cf 136 Gene3D G3DSA:3.30.420.270 62 130 1.1E-14 T 12-10-2018 Alide_2622 7e5eb4fe56c5af38a15bee88edf3bcf7 745 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 744 0.0 T 12-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Alide_2622 7e5eb4fe56c5af38a15bee88edf3bcf7 745 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 12-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Alide_2622 7e5eb4fe56c5af38a15bee88edf3bcf7 745 SUPERFAMILY SSF53659 5 743 0.0 T 12-10-2018 Alide_2622 7e5eb4fe56c5af38a15bee88edf3bcf7 745 PIRSF PIRSF009407 1 744 0.0 T 12-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 Alide_2622 7e5eb4fe56c5af38a15bee88edf3bcf7 745 Gene3D G3DSA:3.40.718.10 408 653 4.2E-6 T 12-10-2018 Alide_0431 0d6ec0ac771604404e30b13e13f932cd 98 SUPERFAMILY SSF117991 12 98 3.66E-27 T 12-10-2018 IPR027471 YbeD-like domain superfamily Alide_0431 0d6ec0ac771604404e30b13e13f932cd 98 Gene3D G3DSA:3.30.70.260 11 98 2.2E-30 T 12-10-2018 Alide_0431 0d6ec0ac771604404e30b13e13f932cd 98 Pfam PF04359 Protein of unknown function (DUF493) 16 98 2.0E-30 T 12-10-2018 IPR007454 Uncharacterised protein family UPF0250 Alide_0431 0d6ec0ac771604404e30b13e13f932cd 98 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 10 98 22.068 T 12-10-2018 IPR007454 Uncharacterised protein family UPF0250 Alide_2277 b9b433fcca5a7db41d80297c2a7b70ed 316 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 1 309 4.7E-126 T 12-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 Alide_2277 b9b433fcca5a7db41d80297c2a7b70ed 316 Pfam PF01207 Dihydrouridine synthase (Dus) 3 299 5.9E-77 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Alide_2277 b9b433fcca5a7db41d80297c2a7b70ed 316 SUPERFAMILY SSF51395 2 296 1.14E-67 T 12-10-2018 Alide_2277 b9b433fcca5a7db41d80297c2a7b70ed 316 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 82 100 - T 12-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Alide_2277 b9b433fcca5a7db41d80297c2a7b70ed 316 PIRSF PIRSF006621 1 310 1.8E-73 T 12-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Alide_2277 b9b433fcca5a7db41d80297c2a7b70ed 316 Gene3D G3DSA:3.20.20.70 1 239 2.2E-69 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2277 b9b433fcca5a7db41d80297c2a7b70ed 316 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 315 47.267 T 12-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 Alide_2277 b9b433fcca5a7db41d80297c2a7b70ed 316 Gene3D G3DSA:1.20.120.1460 242 311 3.9E-14 T 12-10-2018 Alide_2872 46a683ded6f8742e93b5d2dfe54dd398 254 Pfam PF00027 Cyclic nucleotide-binding domain 56 141 3.2E-16 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_2872 46a683ded6f8742e93b5d2dfe54dd398 254 Gene3D G3DSA:2.60.120.10 28 170 6.8E-31 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_2872 46a683ded6f8742e93b5d2dfe54dd398 254 Pfam PF13545 Crp-like helix-turn-helix domain 175 248 5.4E-18 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_2872 46a683ded6f8742e93b5d2dfe54dd398 254 SMART SM00419 194 242 3.1E-9 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_2872 46a683ded6f8742e93b5d2dfe54dd398 254 SUPERFAMILY SSF46785 173 250 6.96E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2872 46a683ded6f8742e93b5d2dfe54dd398 254 SMART SM00100 37 155 6.6E-23 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_2872 46a683ded6f8742e93b5d2dfe54dd398 254 Gene3D G3DSA:1.10.10.10 172 253 3.6E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2872 46a683ded6f8742e93b5d2dfe54dd398 254 SUPERFAMILY SSF51206 33 168 9.03E-30 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_2969 424658a34c56271fe87c0b3cd7f64340 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 254 1.7E-38 T 12-10-2018 Alide_2969 424658a34c56271fe87c0b3cd7f64340 260 Gene3D G3DSA:3.40.50.720 1 256 1.1E-64 T 12-10-2018 Alide_2969 424658a34c56271fe87c0b3cd7f64340 260 SUPERFAMILY SSF51735 2 256 1.22E-62 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2969 424658a34c56271fe87c0b3cd7f64340 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 9.1E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2969 424658a34c56271fe87c0b3cd7f64340 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 9.1E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2969 424658a34c56271fe87c0b3cd7f64340 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 9.1E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2969 424658a34c56271fe87c0b3cd7f64340 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 9.1E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2969 424658a34c56271fe87c0b3cd7f64340 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 9.1E-25 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0997 3bdf193462d61a2dbea8c829ae1ec7f5 232 Gene3D G3DSA:1.10.3720.10 6 229 1.1E-48 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0997 3bdf193462d61a2dbea8c829ae1ec7f5 232 SUPERFAMILY SSF161098 19 213 4.06E-40 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0997 3bdf193462d61a2dbea8c829ae1ec7f5 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 228 2.9E-17 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0997 3bdf193462d61a2dbea8c829ae1ec7f5 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 122 8.6E-19 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_3030 6091ec1191084de91c34278c99ee5db5 458 SUPERFAMILY SSF117892 191 311 4.18E-20 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily Alide_3030 6091ec1191084de91c34278c99ee5db5 458 Pfam PF01145 SPFH domain / Band 7 family 133 319 1.9E-26 T 12-10-2018 IPR001107 Band 7 domain Alide_3030 6091ec1191084de91c34278c99ee5db5 458 SMART SM00244 129 304 1.3E-26 T 12-10-2018 IPR001107 Band 7 domain Alide_3030 6091ec1191084de91c34278c99ee5db5 458 Gene3D G3DSA:3.30.479.30 183 295 9.0E-18 T 12-10-2018 Alide_3030 6091ec1191084de91c34278c99ee5db5 458 Pfam PF12221 Bacterial membrane protein N terminal 21 87 4.5E-8 T 12-10-2018 IPR020980 Menbrane protein HflK, N-terminal Alide_3030 6091ec1191084de91c34278c99ee5db5 458 TIGRFAM TIGR01933 hflK: HflK protein 131 406 3.8E-89 T 12-10-2018 IPR010201 HflK GO:0016021 Alide_0832 e01e0a790951142304dd623bcd74e78d 444 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 149 442 3.1E-78 T 12-10-2018 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 Alide_0832 e01e0a790951142304dd623bcd74e78d 444 Pfam PF01578 Cytochrome C assembly protein 179 439 4.4E-47 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Alide_3121 0faccdd597c2998da62275f4c2ace1d4 150 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 146 1.6E-42 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_3121 0faccdd597c2998da62275f4c2ace1d4 150 SUPERFAMILY SSF55653 60 147 4.19E-25 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Alide_3121 0faccdd597c2998da62275f4c2ace1d4 150 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3121 0faccdd597c2998da62275f4c2ace1d4 150 Gene3D G3DSA:3.40.5.10 1 50 2.9E-20 T 12-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3121 0faccdd597c2998da62275f4c2ace1d4 150 SUPERFAMILY SSF55658 1 56 2.79E-17 T 12-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Alide_3121 0faccdd597c2998da62275f4c2ace1d4 150 Gene3D G3DSA:3.10.430.100 61 148 2.1E-26 T 12-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Alide_3121 0faccdd597c2998da62275f4c2ace1d4 150 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 145 9.7E-26 T 12-10-2018 IPR020069 Ribosomal protein L9, C-terminal Alide_3121 0faccdd597c2998da62275f4c2ace1d4 150 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 4.1E-20 T 12-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3121 0faccdd597c2998da62275f4c2ace1d4 150 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.385 T 12-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_2994 39c0dc348e4e04da10384478133fedec 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 6.2E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_2994 39c0dc348e4e04da10384478133fedec 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 293 322 6.2E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_2994 39c0dc348e4e04da10384478133fedec 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 447 476 6.2E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_2994 39c0dc348e4e04da10384478133fedec 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 399 428 6.2E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_2994 39c0dc348e4e04da10384478133fedec 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 370 397 6.2E-55 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_2994 39c0dc348e4e04da10384478133fedec 544 Pfam PF02203 Tar ligand binding domain homologue 1 150 2.1E-9 T 12-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 Alide_2994 39c0dc348e4e04da10384478133fedec 544 SUPERFAMILY SSF58104 239 520 8.89E-72 T 12-10-2018 Alide_2994 39c0dc348e4e04da10384478133fedec 544 SMART SM00283 272 519 1.4E-87 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_2994 39c0dc348e4e04da10384478133fedec 544 SMART SM00304 219 271 8.7E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_2994 39c0dc348e4e04da10384478133fedec 544 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 331 487 3.4E-54 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_2994 39c0dc348e4e04da10384478133fedec 544 Gene3D G3DSA:1.10.287.950 220 521 8.5E-87 T 12-10-2018 Alide_1555 cb5cd76dd67133788b8cb9c32a976d22 137 Gene3D G3DSA:2.170.150.20 1 136 8.3E-56 T 12-10-2018 Alide_1555 cb5cd76dd67133788b8cb9c32a976d22 137 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 7 134 1.8E-49 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Alide_1555 cb5cd76dd67133788b8cb9c32a976d22 137 SUPERFAMILY SSF51316 6 135 1.88E-54 T 12-10-2018 IPR011057 Mss4-like superfamily Alide_1555 cb5cd76dd67133788b8cb9c32a976d22 137 Pfam PF01641 SelR domain 22 134 1.7E-48 T 12-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Alide_1811 7243447abf036556914428b838a30f31 235 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1811 7243447abf036556914428b838a30f31 235 SUPERFAMILY SSF52540 2 222 8.15E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1811 7243447abf036556914428b838a30f31 235 SMART SM00382 26 210 1.2E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1811 7243447abf036556914428b838a30f31 235 Pfam PF00005 ABC transporter 17 159 2.2E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1811 7243447abf036556914428b838a30f31 235 Gene3D G3DSA:3.40.50.300 1 228 6.7E-57 T 12-10-2018 Alide_3903 19ede8f315f7ff5bfd9c4694adbf2945 772 Gene3D G3DSA:2.170.130.10 36 180 9.1E-14 T 12-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Alide_3903 19ede8f315f7ff5bfd9c4694adbf2945 772 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 172 1.5E-10 T 12-10-2018 IPR012910 TonB-dependent receptor, plug domain Alide_3903 19ede8f315f7ff5bfd9c4694adbf2945 772 Pfam PF00593 TonB dependent receptor 322 770 1.3E-51 T 12-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Alide_3903 19ede8f315f7ff5bfd9c4694adbf2945 772 SUPERFAMILY SSF56935 32 771 8.6E-92 T 12-10-2018 Alide_3896 9605ebc705da8c19ab15fa191df8e8e3 324 Gene3D G3DSA:3.40.50.1100 19 313 2.3E-74 T 12-10-2018 Alide_3896 9605ebc705da8c19ab15fa191df8e8e3 324 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 61 - T 12-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Alide_3896 9605ebc705da8c19ab15fa191df8e8e3 324 Gene3D G3DSA:3.40.50.1100 56 153 2.3E-74 T 12-10-2018 Alide_3896 9605ebc705da8c19ab15fa191df8e8e3 324 SUPERFAMILY SSF53686 6 321 3.93E-74 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_3896 9605ebc705da8c19ab15fa191df8e8e3 324 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 308 2.4E-59 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_0172 be510840aa6d955a10de1da2d5114b9b 341 SUPERFAMILY SSF53850 130 308 2.29E-14 T 12-10-2018 Alide_0172 be510840aa6d955a10de1da2d5114b9b 341 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 65 334 7.7E-89 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0172 be510840aa6d955a10de1da2d5114b9b 341 Gene3D G3DSA:3.40.190.10 143 266 5.8E-116 T 12-10-2018 Alide_0172 be510840aa6d955a10de1da2d5114b9b 341 Gene3D G3DSA:3.40.190.150 46 331 5.8E-116 T 12-10-2018 Alide_0172 be510840aa6d955a10de1da2d5114b9b 341 PIRSF PIRSF017082 8 341 4.5E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4091 856a70140009491ec834768ae9509888 212 Pfam PF00072 Response regulator receiver domain 7 117 2.3E-17 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4091 856a70140009491ec834768ae9509888 212 Gene3D G3DSA:3.40.50.12740 5 206 4.6E-48 T 12-10-2018 Alide_4091 856a70140009491ec834768ae9509888 212 SUPERFAMILY SSF52172 1 153 5.69E-26 T 12-10-2018 IPR011006 CheY-like superfamily Alide_4091 856a70140009491ec834768ae9509888 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 6.4E-18 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4091 856a70140009491ec834768ae9509888 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4091 856a70140009491ec834768ae9509888 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 7.8E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4091 856a70140009491ec834768ae9509888 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 7.8E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4091 856a70140009491ec834768ae9509888 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 7.8E-11 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4091 856a70140009491ec834768ae9509888 212 SMART SM00448 4 118 4.6E-17 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4091 856a70140009491ec834768ae9509888 212 SMART SM00421 146 203 4.4E-21 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_4091 856a70140009491ec834768ae9509888 212 SUPERFAMILY SSF46894 129 204 3.23E-19 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_3391 170e543b809d5e97ac831ef5b030d3f4 268 PIRSF PIRSF015582 1 268 1.6E-75 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like Alide_3391 170e543b809d5e97ac831ef5b030d3f4 268 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 4 208 1.8E-31 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Alide_3391 170e543b809d5e97ac831ef5b030d3f4 268 Gene3D G3DSA:3.20.20.60 1 268 1.7E-83 T 12-10-2018 Alide_3391 170e543b809d5e97ac831ef5b030d3f4 268 SUPERFAMILY SSF51621 3 218 1.12E-59 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_1356 ae70a4da7c03c2e2945d0fd3ae318d83 322 SUPERFAMILY SSF103473 22 308 7.06E-47 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1356 ae70a4da7c03c2e2945d0fd3ae318d83 322 Pfam PF07690 Major Facilitator Superfamily 28 310 9.8E-32 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_1356 ae70a4da7c03c2e2945d0fd3ae318d83 322 Gene3D G3DSA:1.20.1720.10 23 319 1.9E-72 T 12-10-2018 Alide_1356 ae70a4da7c03c2e2945d0fd3ae318d83 322 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 23 289 9.8E-60 T 12-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 Alide_0930 5bec485fba09450469cd2ebd91812ccb 224 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.2E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Alide_0930 5bec485fba09450469cd2ebd91812ccb 224 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.2E-7 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Alide_0930 5bec485fba09450469cd2ebd91812ccb 224 Pfam PF00293 NUDIX domain 7 136 1.5E-24 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Alide_0930 5bec485fba09450469cd2ebd91812ccb 224 Gene3D G3DSA:3.90.79.10 1 157 3.5E-42 T 12-10-2018 Alide_0930 5bec485fba09450469cd2ebd91812ccb 224 SUPERFAMILY SSF55811 6 163 2.57E-30 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_0930 5bec485fba09450469cd2ebd91812ccb 224 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.424 T 12-10-2018 IPR022927 RNA pyrophosphohydrolase RppH Alide_0930 5bec485fba09450469cd2ebd91812ccb 224 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Alide_0717 db67d71357ea25bad3db64053fd24f1d 260 Gene3D G3DSA:3.30.565.10 110 260 3.3E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0717 db67d71357ea25bad3db64053fd24f1d 260 SUPERFAMILY SSF55874 106 258 9.56E-29 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_0717 db67d71357ea25bad3db64053fd24f1d 260 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 149 256 1.9E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_0717 db67d71357ea25bad3db64053fd24f1d 260 Gene3D G3DSA:1.10.287.130 8 104 2.5E-10 T 12-10-2018 Alide_0717 db67d71357ea25bad3db64053fd24f1d 260 PRINTS PR00344 Bacterial sensor protein C-terminal signature 220 238 1.1E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0717 db67d71357ea25bad3db64053fd24f1d 260 PRINTS PR00344 Bacterial sensor protein C-terminal signature 187 201 1.1E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0717 db67d71357ea25bad3db64053fd24f1d 260 PRINTS PR00344 Bacterial sensor protein C-terminal signature 244 257 1.1E-6 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_0717 db67d71357ea25bad3db64053fd24f1d 260 SUPERFAMILY SSF47384 17 105 1.26E-10 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_0717 db67d71357ea25bad3db64053fd24f1d 260 SMART SM00387 147 260 2.2E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1110 ecfa87a86353764c4edb0ea5ad8c651c 478 SUPERFAMILY SSF53720 4 475 8.51E-162 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_1110 ecfa87a86353764c4edb0ea5ad8c651c 478 Gene3D G3DSA:3.40.605.10 10 470 1.7E-163 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_1110 ecfa87a86353764c4edb0ea5ad8c651c 478 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_1110 ecfa87a86353764c4edb0ea5ad8c651c 478 Gene3D G3DSA:3.40.309.10 254 443 1.7E-163 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_1110 ecfa87a86353764c4edb0ea5ad8c651c 478 Pfam PF00171 Aldehyde dehydrogenase family 14 473 8.6E-160 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_0644 ba218bf247ce4054053b9df3480c27d1 296 Pfam PF00483 Nucleotidyl transferase 7 243 2.5E-70 T 12-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Alide_0644 ba218bf247ce4054053b9df3480c27d1 296 SUPERFAMILY SSF53448 6 291 4.28E-94 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0644 ba218bf247ce4054053b9df3480c27d1 296 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 7 291 8.9E-159 T 12-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Alide_0644 ba218bf247ce4054053b9df3480c27d1 296 Gene3D G3DSA:3.90.550.10 2 296 5.3E-89 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3211 2e1d7c6ac868be7280eae20eceea2760 721 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 27 706 2.8E-185 T 12-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3211 2e1d7c6ac868be7280eae20eceea2760 721 SUPERFAMILY SSF56601 201 607 3.68E-89 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Alide_3211 2e1d7c6ac868be7280eae20eceea2760 721 Pfam PF00905 Penicillin binding protein transpeptidase domain 296 560 1.3E-13 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Alide_3211 2e1d7c6ac868be7280eae20eceea2760 721 SUPERFAMILY SSF53955 34 229 8.15E-44 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_3211 2e1d7c6ac868be7280eae20eceea2760 721 Gene3D G3DSA:3.40.710.10 243 595 1.7E-80 T 12-10-2018 Alide_3211 2e1d7c6ac868be7280eae20eceea2760 721 Gene3D G3DSA:1.10.3810.10 38 235 5.2E-42 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3211 2e1d7c6ac868be7280eae20eceea2760 721 Pfam PF00912 Transglycosylase 45 219 7.6E-45 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3211 2e1d7c6ac868be7280eae20eceea2760 721 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 631 708 4.9E-20 T 12-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_1291 d3ffcd7375b99d6e66a74d653459ee4b 316 Gene3D G3DSA:3.90.1200.10 105 313 5.8E-73 T 12-10-2018 Alide_1291 d3ffcd7375b99d6e66a74d653459ee4b 316 Gene3D G3DSA:3.30.200.20 1 102 2.3E-34 T 12-10-2018 Alide_1291 d3ffcd7375b99d6e66a74d653459ee4b 316 Pfam PF01636 Phosphotransferase enzyme family 27 256 6.1E-32 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase Alide_1291 d3ffcd7375b99d6e66a74d653459ee4b 316 Hamap MF_00301 Homoserine kinase [thrB]. 1 316 164.575 T 12-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Alide_1291 d3ffcd7375b99d6e66a74d653459ee4b 316 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 307 1.8E-96 T 12-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Alide_1291 d3ffcd7375b99d6e66a74d653459ee4b 316 SUPERFAMILY SSF56112 5 311 9.04E-72 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_0257 e50a17046fcfa3670a435d362c06427e 299 PIRSF PIRSF035875 5 298 8.9E-52 T 12-10-2018 IPR017039 Virulence factor BrkB Alide_0257 e50a17046fcfa3670a435d362c06427e 299 Pfam PF03631 Virulence factor BrkB 28 287 1.3E-47 T 12-10-2018 IPR017039 Virulence factor BrkB Alide_2817 0aaa9a9650e24555f03e7f3decf6f6bf 197 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 73 157 7.8E-12 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2817 0aaa9a9650e24555f03e7f3decf6f6bf 197 SUPERFAMILY SSF46626 76 179 1.53E-24 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2817 0aaa9a9650e24555f03e7f3decf6f6bf 197 Gene3D G3DSA:1.10.760.10 57 185 3.1E-41 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0135 f14c1116c7ed8a58bacde8dc7b2a4c35 151 SUPERFAMILY SSF54637 25 149 4.6E-28 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0135 f14c1116c7ed8a58bacde8dc7b2a4c35 151 Gene3D G3DSA:3.10.129.10 19 151 9.8E-37 T 12-10-2018 Alide_0135 f14c1116c7ed8a58bacde8dc7b2a4c35 151 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 31 142 6.3E-16 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_0135 f14c1116c7ed8a58bacde8dc7b2a4c35 151 Pfam PF03061 Thioesterase superfamily 62 137 1.3E-12 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_2789 054077c788e44c6c46858bad8ab7a514 323 SUPERFAMILY SSF51569 9 302 7.51E-77 T 12-10-2018 Alide_2789 054077c788e44c6c46858bad8ab7a514 323 Gene3D G3DSA:3.20.20.70 7 303 1.4E-113 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2789 054077c788e44c6c46858bad8ab7a514 323 Pfam PF00682 HMGL-like 11 283 8.4E-50 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Alide_3084 291a77100d25db154a6d66fd31d9e45d 480 Pfam PF00270 DEAD/DEAH box helicase 27 201 2.9E-51 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_3084 291a77100d25db154a6d66fd31d9e45d 480 SMART SM00487 22 227 5.0E-62 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_3084 291a77100d25db154a6d66fd31d9e45d 480 SMART SM00490 263 344 6.9E-33 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_3084 291a77100d25db154a6d66fd31d9e45d 480 Gene3D G3DSA:3.40.50.300 2 215 8.6E-79 T 12-10-2018 Alide_3084 291a77100d25db154a6d66fd31d9e45d 480 Pfam PF00271 Helicase conserved C-terminal domain 236 344 4.7E-28 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_3084 291a77100d25db154a6d66fd31d9e45d 480 SUPERFAMILY SSF52540 79 364 1.05E-74 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3084 291a77100d25db154a6d66fd31d9e45d 480 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 12-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Alide_3084 291a77100d25db154a6d66fd31d9e45d 480 Gene3D G3DSA:3.40.50.300 218 388 7.6E-50 T 12-10-2018 Alide_1328 6f588ddd8bd54a34f9ba3fb02926e7a5 316 Gene3D G3DSA:1.10.1040.10 188 315 1.0E-41 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_1328 6f588ddd8bd54a34f9ba3fb02926e7a5 316 Gene3D G3DSA:3.40.50.720 17 187 2.1E-58 T 12-10-2018 Alide_1328 6f588ddd8bd54a34f9ba3fb02926e7a5 316 SUPERFAMILY SSF51735 18 186 5.07E-19 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1328 6f588ddd8bd54a34f9ba3fb02926e7a5 316 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 187 309 1.4E-34 T 12-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain Alide_1328 6f588ddd8bd54a34f9ba3fb02926e7a5 316 Pfam PF02558 Ketopantoate reductase PanE/ApbA 19 164 1.3E-38 T 12-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain Alide_1328 6f588ddd8bd54a34f9ba3fb02926e7a5 316 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 17 313 1.8E-80 T 12-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Alide_1328 6f588ddd8bd54a34f9ba3fb02926e7a5 316 SUPERFAMILY SSF48179 187 310 1.77E-31 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_4083 2f1ed90e71a80a5f5bae08928d553387 214 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 24 186 3.3E-30 T 12-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 Alide_4083 2f1ed90e71a80a5f5bae08928d553387 214 Pfam PF03968 OstA-like protein 34 154 7.6E-18 T 12-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal Alide_4083 2f1ed90e71a80a5f5bae08928d553387 214 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 3 186 26.045 T 12-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 Alide_4083 2f1ed90e71a80a5f5bae08928d553387 214 Gene3D G3DSA:2.60.450.10 26 189 2.7E-41 T 12-10-2018 Alide_4468 04dba3d97745096dfa3440f4ff9abcfc 93 PIRSF PIRSF006156 1 93 7.2E-26 T 12-10-2018 IPR004386 Toxin-antitoxin system, YafQ-like toxin Alide_4468 04dba3d97745096dfa3440f4ff9abcfc 93 Gene3D G3DSA:3.30.2310.20 1 93 4.8E-32 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Alide_4468 04dba3d97745096dfa3440f4ff9abcfc 93 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 92 1.9E-23 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Alide_4468 04dba3d97745096dfa3440f4ff9abcfc 93 Pfam PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ 2 93 8.6E-33 T 12-10-2018 IPR004386 Toxin-antitoxin system, YafQ-like toxin Alide_4468 04dba3d97745096dfa3440f4ff9abcfc 93 SUPERFAMILY SSF143011 1 92 9.02E-24 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Alide_2486 59cad9aa64a256703b1fd89da9e7e161 233 Pfam PF01895 PhoU domain 22 108 1.5E-16 T 12-10-2018 IPR026022 PhoU domain Alide_2486 59cad9aa64a256703b1fd89da9e7e161 233 Pfam PF01895 PhoU domain 129 210 6.7E-15 T 12-10-2018 IPR026022 PhoU domain Alide_2486 59cad9aa64a256703b1fd89da9e7e161 233 SUPERFAMILY SSF109755 8 229 6.49E-64 T 12-10-2018 Alide_2486 59cad9aa64a256703b1fd89da9e7e161 233 Gene3D G3DSA:1.20.58.220 118 232 5.0E-31 T 12-10-2018 IPR038078 PhoU-like domain superfamily Alide_2486 59cad9aa64a256703b1fd89da9e7e161 233 Gene3D G3DSA:1.20.58.220 1 117 4.9E-34 T 12-10-2018 IPR038078 PhoU-like domain superfamily Alide_2486 59cad9aa64a256703b1fd89da9e7e161 233 PIRSF PIRSF003107 3 225 3.4E-55 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Alide_2486 59cad9aa64a256703b1fd89da9e7e161 233 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 8 220 4.1E-63 T 12-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Alide_1989 9eddfb5e0b18c535671a52ff5f968b69 177 SMART SM00448 5 117 4.6E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1989 9eddfb5e0b18c535671a52ff5f968b69 177 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 158 177 1.4E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_1989 9eddfb5e0b18c535671a52ff5f968b69 177 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 141 158 1.4E-8 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_1989 9eddfb5e0b18c535671a52ff5f968b69 177 SUPERFAMILY SSF52172 7 117 3.27E-24 T 12-10-2018 IPR011006 CheY-like superfamily Alide_1989 9eddfb5e0b18c535671a52ff5f968b69 177 Pfam PF00072 Response regulator receiver domain 8 116 4.5E-19 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1989 9eddfb5e0b18c535671a52ff5f968b69 177 Pfam PF02954 Bacterial regulatory protein, Fis family 136 174 5.6E-13 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_1989 9eddfb5e0b18c535671a52ff5f968b69 177 Gene3D G3DSA:3.40.50.2300 6 119 1.9E-23 T 12-10-2018 Alide_1989 9eddfb5e0b18c535671a52ff5f968b69 177 SUPERFAMILY SSF46689 133 174 2.26E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1989 9eddfb5e0b18c535671a52ff5f968b69 177 Gene3D G3DSA:1.10.10.60 120 176 1.0E-19 T 12-10-2018 Alide_3899 5bfef27256c0ca7d56b22e162e0ef476 375 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 242 3.2E-6 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Alide_3899 5bfef27256c0ca7d56b22e162e0ef476 375 Gene3D G3DSA:3.40.50.720 2 362 4.6E-89 T 12-10-2018 Alide_3899 5bfef27256c0ca7d56b22e162e0ef476 375 SUPERFAMILY SSF51735 1 358 6.08E-31 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1849 f4daf78a6c2440d356c954dc2f90c382 100 Gene3D G3DSA:4.10.520.10 1 94 2.1E-34 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_1849 f4daf78a6c2440d356c954dc2f90c382 100 Pfam PF00216 Bacterial DNA-binding protein 1 90 4.7E-32 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_1849 f4daf78a6c2440d356c954dc2f90c382 100 SMART SM00411 1 91 7.8E-43 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_1849 f4daf78a6c2440d356c954dc2f90c382 100 SUPERFAMILY SSF47729 1 92 1.0E-31 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_1849 f4daf78a6c2440d356c954dc2f90c382 100 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.1E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_1849 f4daf78a6c2440d356c954dc2f90c382 100 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.1E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_1849 f4daf78a6c2440d356c954dc2f90c382 100 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.1E-17 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_0560 2dbb4ec2f31df730f47a095f0ca79ae4 282 SUPERFAMILY SSF48179 185 282 1.62E-33 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_0560 2dbb4ec2f31df730f47a095f0ca79ae4 282 SUPERFAMILY SSF51735 1 185 6.19E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0560 2dbb4ec2f31df730f47a095f0ca79ae4 282 PIRSF PIRSF000105 1 282 1.3E-85 T 12-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 Alide_0560 2dbb4ec2f31df730f47a095f0ca79ae4 282 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 183 207 - T 12-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_0560 2dbb4ec2f31df730f47a095f0ca79ae4 282 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 282 2.3E-35 T 12-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_0560 2dbb4ec2f31df730f47a095f0ca79ae4 282 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 183 1.7E-64 T 12-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 Alide_0560 2dbb4ec2f31df730f47a095f0ca79ae4 282 Gene3D G3DSA:3.40.50.720 1 189 8.1E-74 T 12-10-2018 Alide_0560 2dbb4ec2f31df730f47a095f0ca79ae4 282 Gene3D G3DSA:1.10.1040.10 193 278 1.2E-34 T 12-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Alide_0647 f2f117c6295e46725fe5e77cd0f08ab2 303 Pfam PF00535 Glycosyl transferase family 2 10 125 1.0E-14 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Alide_0647 f2f117c6295e46725fe5e77cd0f08ab2 303 SUPERFAMILY SSF53448 7 244 4.0E-37 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0647 f2f117c6295e46725fe5e77cd0f08ab2 303 Gene3D G3DSA:3.90.550.10 6 216 7.4E-28 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0647 f2f117c6295e46725fe5e77cd0f08ab2 303 TIGRFAM TIGR01556 rhamnosyltran: rhamnosyltransferase 13 289 3.2E-61 T 12-10-2018 IPR006446 Rhamnosyltransferase Alide_0842 5a0595f74640250f7156cbbf4d91c970 227 Pfam PF04350 Pilus assembly protein, PilO 67 211 3.4E-51 T 12-10-2018 IPR007445 Pilus assembly protein, PilO Alide_0842 5a0595f74640250f7156cbbf4d91c970 227 Gene3D G3DSA:3.30.70.60 112 220 1.1E-34 T 12-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Alide_0842 5a0595f74640250f7156cbbf4d91c970 227 PIRSF PIRSF016482 16 227 7.7E-55 T 12-10-2018 IPR007445 Pilus assembly protein, PilO Alide_1956 6f6e740150f166ca382f8423f24822e9 431 Gene3D G3DSA:2.20.28.60 1 54 7.2E-25 T 12-10-2018 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 PIRSF PIRSF001369 41 431 5.5E-154 T 12-10-2018 IPR024176 Citrate synthase, bacterial-type Alide_1956 6f6e740150f166ca382f8423f24822e9 431 Gene3D G3DSA:1.10.230.10 272 384 1.7E-139 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain Alide_1956 6f6e740150f166ca382f8423f24822e9 431 Pfam PF00285 Citrate synthase, C-terminal domain 52 419 1.1E-125 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 PRINTS PR00143 Citrate synthase signature 367 383 7.0E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 PRINTS PR00143 Citrate synthase signature 303 323 7.0E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 PRINTS PR00143 Citrate synthase signature 223 238 7.0E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 PRINTS PR00143 Citrate synthase signature 169 182 7.0E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 PRINTS PR00143 Citrate synthase signature 387 401 7.0E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 PRINTS PR00143 Citrate synthase signature 245 273 7.0E-54 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 18 430 1.8E-231 T 12-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 SUPERFAMILY SSF48256 9 429 1.18E-157 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 Gene3D G3DSA:1.10.580.10 61 419 1.7E-139 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Alide_1956 6f6e740150f166ca382f8423f24822e9 431 ProSitePatterns PS00480 Citrate synthase signature. 310 322 - T 12-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 SUPERFAMILY SSF53850 95 271 1.3E-50 T 12-10-2018 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 Pfam PF01842 ACT domain 285 349 8.9E-9 T 12-10-2018 IPR002912 ACT domain Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 Gene3D G3DSA:3.40.190.10 99 268 9.8E-52 T 12-10-2018 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 Gene3D G3DSA:3.40.190.10 176 260 9.8E-52 T 12-10-2018 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 PIRSF PIRSF001500 5 366 1.5E-120 T 12-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 Gene3D G3DSA:3.30.70.260 275 366 1.8E-27 T 12-10-2018 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 Pfam PF00800 Prephenate dehydratase 96 268 6.4E-55 T 12-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 TIGRFAM TIGR01807 CM_P2: chorismate mutase 11 84 3.6E-27 T 12-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 Gene3D G3DSA:1.20.59.10 13 98 4.7E-29 T 12-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 Pfam PF01817 Chorismate mutase type II 15 91 2.2E-23 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 SUPERFAMILY SSF55021 277 363 1.62E-24 T 12-10-2018 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 312 319 - T 12-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 SUPERFAMILY SSF48600 11 94 1.26E-21 T 12-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Alide_1853 21b7d551e0b333dbb9f05259ed62bbb0 366 SMART SM00830 15 94 5.1E-30 T 12-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Alide_4370 5b209ed6a44746b69a790c5dfc87eb29 260 Gene3D G3DSA:3.40.50.300 1 255 4.0E-57 T 12-10-2018 Alide_4370 5b209ed6a44746b69a790c5dfc87eb29 260 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_4370 5b209ed6a44746b69a790c5dfc87eb29 260 SMART SM00382 35 230 2.5E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4370 5b209ed6a44746b69a790c5dfc87eb29 260 Pfam PF00005 ABC transporter 28 183 1.9E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4370 5b209ed6a44746b69a790c5dfc87eb29 260 SUPERFAMILY SSF52540 10 252 9.53E-58 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4370 5b209ed6a44746b69a790c5dfc87eb29 260 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 252 4.2E-10 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_4154 9c9d763dc43a59e660c77d2fd39ab06a 558 Gene3D G3DSA:3.30.300.310 462 558 6.1E-30 T 12-10-2018 Alide_4154 9c9d763dc43a59e660c77d2fd39ab06a 558 Pfam PF00501 AMP-binding enzyme 32 465 1.9E-104 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_4154 9c9d763dc43a59e660c77d2fd39ab06a 558 SUPERFAMILY SSF56801 18 556 2.09E-150 T 12-10-2018 Alide_4154 9c9d763dc43a59e660c77d2fd39ab06a 558 Pfam PF13193 AMP-binding enzyme C-terminal domain 474 548 8.3E-17 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_4154 9c9d763dc43a59e660c77d2fd39ab06a 558 ProSitePatterns PS00455 Putative AMP-binding domain signature. 210 221 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_4154 9c9d763dc43a59e660c77d2fd39ab06a 558 Gene3D G3DSA:3.40.50.12780 14 461 1.2E-116 T 12-10-2018 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 PIRSF PIRSF016578 2 112 0.04 T 12-10-2018 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 PIRSF PIRSF016578 236 365 1.4E-7 T 12-10-2018 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 PIRSF PIRSF016578 128 199 0.37 T 12-10-2018 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 Gene3D G3DSA:1.10.540.10 1 119 3.5E-29 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 220 2.8E-19 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 Gene3D G3DSA:1.20.140.10 239 386 3.0E-40 T 12-10-2018 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 380 1.3E-34 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 SUPERFAMILY SSF47203 231 386 2.74E-45 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 Gene3D G3DSA:2.40.110.10 121 238 1.5E-28 T 12-10-2018 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 SUPERFAMILY SSF56645 1 232 2.23E-58 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2982 bafb7d757923d3a08db938b7693857f9 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 1.3E-24 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_1256 384622fe89fd4512d81524e1382055d6 147 PIRSF PIRSF029208 1 137 8.7E-51 T 12-10-2018 IPR016912 Bacteriophage P2, GpU Alide_1256 384622fe89fd4512d81524e1382055d6 147 Pfam PF06995 Phage P2 GpU 6 125 4.1E-44 T 12-10-2018 IPR009734 Myoviridae, GpU Alide_4229 465a70940f74079f17a16cbff64d11dd 764 Pfam PF07793 Protein of unknown function (DUF1631) 7 753 1.9E-146 T 12-10-2018 IPR012434 Protein of unknown function DUF1631 Alide_3214 2a9367de9edd353a5ae2dd291a4b5935 549 SUPERFAMILY SSF56645 144 404 6.54E-56 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3214 2a9367de9edd353a5ae2dd291a4b5935 549 Gene3D G3DSA:2.40.110.10 268 398 1.7E-33 T 12-10-2018 Alide_3214 2a9367de9edd353a5ae2dd291a4b5935 549 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 269 377 6.6E-19 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3214 2a9367de9edd353a5ae2dd291a4b5935 549 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 499 518 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_3214 2a9367de9edd353a5ae2dd291a4b5935 549 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 393 541 5.7E-38 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3214 2a9367de9edd353a5ae2dd291a4b5935 549 SUPERFAMILY SSF47203 392 539 1.61E-39 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3214 2a9367de9edd353a5ae2dd291a4b5935 549 Gene3D G3DSA:1.20.140.10 399 548 5.1E-40 T 12-10-2018 Alide_3214 2a9367de9edd353a5ae2dd291a4b5935 549 Gene3D G3DSA:1.10.540.10 147 266 2.7E-26 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3214 2a9367de9edd353a5ae2dd291a4b5935 549 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 153 265 1.9E-22 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3887 9454106b7ee21ed2e9527ba71aa1181e 660 PRINTS PR01005 Flagellar hook-associated protein signature 259 281 6.0E-10 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Alide_3887 9454106b7ee21ed2e9527ba71aa1181e 660 PRINTS PR01005 Flagellar hook-associated protein signature 411 428 6.0E-10 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Alide_3887 9454106b7ee21ed2e9527ba71aa1181e 660 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 6.0E-10 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Alide_3887 9454106b7ee21ed2e9527ba71aa1181e 660 PRINTS PR01005 Flagellar hook-associated protein signature 48 70 6.0E-10 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Alide_3887 9454106b7ee21ed2e9527ba71aa1181e 660 PRINTS PR01005 Flagellar hook-associated protein signature 155 179 6.0E-10 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Alide_3887 9454106b7ee21ed2e9527ba71aa1181e 660 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 603 656 2.5E-10 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Alide_3887 9454106b7ee21ed2e9527ba71aa1181e 660 Pfam PF00460 Flagella basal body rod protein 4 33 1.2E-4 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Alide_3887 9454106b7ee21ed2e9527ba71aa1181e 660 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 2 329 3.4E-66 T 12-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Alide_3887 9454106b7ee21ed2e9527ba71aa1181e 660 SUPERFAMILY SSF64518 133 656 5.89E-37 T 12-10-2018 Alide_2280 c4cc7cff4e56c320bc69cd98570a9409 374 Gene3D G3DSA:3.30.360.10 133 321 2.5E-63 T 12-10-2018 Alide_2280 c4cc7cff4e56c320bc69cd98570a9409 374 SUPERFAMILY SSF55347 133 367 7.19E-54 T 12-10-2018 Alide_2280 c4cc7cff4e56c320bc69cd98570a9409 374 Gene3D G3DSA:3.40.50.720 16 358 2.5E-63 T 12-10-2018 Alide_2280 c4cc7cff4e56c320bc69cd98570a9409 374 SUPERFAMILY SSF51735 13 187 7.68E-24 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2280 c4cc7cff4e56c320bc69cd98570a9409 374 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 132 354 6.1E-12 T 12-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 Alide_2280 c4cc7cff4e56c320bc69cd98570a9409 374 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 16 110 3.6E-15 T 12-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 Alide_4074 c9396d54dc33deadd7d181ea510400ae 201 SMART SM00448 11 122 2.4E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4074 c9396d54dc33deadd7d181ea510400ae 201 PIRSF PIRSF036382 4 200 3.1E-35 T 12-10-2018 IPR008327 Signal transduction response regulator, antiterminator Alide_4074 c9396d54dc33deadd7d181ea510400ae 201 SMART SM01012 138 193 3.0E-8 T 12-10-2018 IPR005561 ANTAR domain GO:0003723 Alide_4074 c9396d54dc33deadd7d181ea510400ae 201 Pfam PF03861 ANTAR domain 140 193 1.9E-10 T 12-10-2018 IPR005561 ANTAR domain GO:0003723 Alide_4074 c9396d54dc33deadd7d181ea510400ae 201 SUPERFAMILY SSF52172 10 193 7.68E-40 T 12-10-2018 IPR011006 CheY-like superfamily Alide_4074 c9396d54dc33deadd7d181ea510400ae 201 Gene3D G3DSA:1.10.10.10 140 198 6.2E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4074 c9396d54dc33deadd7d181ea510400ae 201 Gene3D G3DSA:3.40.50.2300 10 137 2.5E-28 T 12-10-2018 Alide_4074 c9396d54dc33deadd7d181ea510400ae 201 Pfam PF00072 Response regulator receiver domain 14 122 4.7E-21 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3063 4d66e902f9f53574c3ba4918c87ee490 274 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 258 1.3E-70 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Alide_3063 4d66e902f9f53574c3ba4918c87ee490 274 Pfam PF02673 Bacitracin resistance protein BacA 9 260 1.0E-85 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Alide_3063 4d66e902f9f53574c3ba4918c87ee490 274 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 265 17.864 T 12-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Alide_2678 c9941cb47396d36919716e627fd9aae7 346 SUPERFAMILY SSF161098 142 328 4.19E-21 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2678 c9941cb47396d36919716e627fd9aae7 346 Gene3D G3DSA:1.10.3720.10 136 342 2.9E-18 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2678 c9941cb47396d36919716e627fd9aae7 346 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 161 345 5.8E-30 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_2678 c9941cb47396d36919716e627fd9aae7 346 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 11 51 8.6E-8 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Alide_1081 3d86a54f7cc1a65d6b6cef668ffeae3d 428 SUPERFAMILY SSF141868 24 220 3.53E-21 T 12-10-2018 IPR035919 EAL domain superfamily Alide_1081 3d86a54f7cc1a65d6b6cef668ffeae3d 428 Gene3D G3DSA:3.20.20.450 73 219 2.9E-14 T 12-10-2018 IPR035919 EAL domain superfamily Alide_1081 3d86a54f7cc1a65d6b6cef668ffeae3d 428 SMART SM00052 16 220 9.6E-4 T 12-10-2018 IPR001633 EAL domain Alide_1081 3d86a54f7cc1a65d6b6cef668ffeae3d 428 Gene3D G3DSA:1.10.3210.10 220 419 4.8E-21 T 12-10-2018 Alide_1081 3d86a54f7cc1a65d6b6cef668ffeae3d 428 SUPERFAMILY SSF109604 206 424 4.71E-38 T 12-10-2018 Alide_1081 3d86a54f7cc1a65d6b6cef668ffeae3d 428 Pfam PF00563 EAL domain 98 215 2.7E-10 T 12-10-2018 IPR001633 EAL domain Alide_1081 3d86a54f7cc1a65d6b6cef668ffeae3d 428 Pfam PF08668 HDOD domain 232 343 1.1E-11 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD Alide_1081 3d86a54f7cc1a65d6b6cef668ffeae3d 428 PIRSF PIRSF003180 24 427 1.1E-93 T 12-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing Alide_4098 800ef67fd2b76a4fe9b5e60140e62ce2 339 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 22 141 6.5E-46 T 12-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Alide_4098 800ef67fd2b76a4fe9b5e60140e62ce2 339 Gene3D G3DSA:3.30.470.20 136 314 5.4E-102 T 12-10-2018 Alide_4098 800ef67fd2b76a4fe9b5e60140e62ce2 339 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 145 318 3.1E-69 T 12-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Alide_4098 800ef67fd2b76a4fe9b5e60140e62ce2 339 TIGRFAM TIGR01380 glut_syn: glutathione synthase 22 333 4.6E-121 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Alide_4098 800ef67fd2b76a4fe9b5e60140e62ce2 339 Gene3D G3DSA:3.30.1490.20 158 222 5.4E-102 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_4098 800ef67fd2b76a4fe9b5e60140e62ce2 339 SUPERFAMILY SSF56059 145 331 1.87E-54 T 12-10-2018 Alide_4098 800ef67fd2b76a4fe9b5e60140e62ce2 339 SUPERFAMILY SSF52440 22 143 1.7E-41 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_4098 800ef67fd2b76a4fe9b5e60140e62ce2 339 Gene3D G3DSA:3.40.50.20 27 135 5.4E-102 T 12-10-2018 Alide_4098 800ef67fd2b76a4fe9b5e60140e62ce2 339 Hamap MF_00162 Glutathione synthetase [gshB]. 1 337 153.523 T 12-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 Alide_3477 176af07d43a8a1110abb95f4b12417fe 187 Pfam PF02630 SCO1/SenC 28 162 5.6E-36 T 12-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3477 176af07d43a8a1110abb95f4b12417fe 187 SUPERFAMILY SSF52833 27 185 8.31E-50 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3477 176af07d43a8a1110abb95f4b12417fe 187 Gene3D G3DSA:3.40.30.10 15 183 1.4E-51 T 12-10-2018 Alide_0251 16f2cc0fbbc83addd1e0e3796701bbd5 102 SUPERFAMILY SSF47413 1 65 1.53E-17 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_0251 16f2cc0fbbc83addd1e0e3796701bbd5 102 Gene3D G3DSA:1.10.260.40 1 67 1.2E-19 T 12-10-2018 Alide_0251 16f2cc0fbbc83addd1e0e3796701bbd5 102 SMART SM00530 6 61 2.9E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_0251 16f2cc0fbbc83addd1e0e3796701bbd5 102 Pfam PF01381 Helix-turn-helix 8 54 1.6E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_4122 00b95665986ba63abbffce241ea9a77b 139 SUPERFAMILY SSF46785 4 133 2.64E-40 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4122 00b95665986ba63abbffce241ea9a77b 139 Gene3D G3DSA:3.30.1490.190 85 139 1.3E-22 T 12-10-2018 Alide_4122 00b95665986ba63abbffce241ea9a77b 139 Gene3D G3DSA:1.10.10.10 1 83 1.8E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4122 00b95665986ba63abbffce241ea9a77b 139 Pfam PF01475 Ferric uptake regulator family 10 129 1.9E-43 T 12-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Alide_2840 2ae7e3154477bd303455dce642b20bb4 674 Pfam PF12697 Alpha/beta hydrolase family 373 643 1.2E-7 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2840 2ae7e3154477bd303455dce642b20bb4 674 SUPERFAMILY SSF53474 367 626 8.18E-23 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 Gene3D G3DSA:3.40.50.720 9 289 3.6E-71 T 12-10-2018 Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 SUPERFAMILY SSF51735 7 256 4.21E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 4.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 4.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 4.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 4.4E-22 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 1.1E-40 T 12-10-2018 Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 1.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 1.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 1.2E-8 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0164 20a283dd8ba7f5e3f4bea44f270c26ed 305 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 205 2.1E-7 T 12-10-2018 Alide_0817 f459cca0c818c7e64db095a34f000374 531 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 267 280 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 Pfam PF00342 Phosphoglucose isomerase 56 524 8.6E-167 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 Gene3D G3DSA:3.40.50.10490 16 490 6.2E-191 T 12-10-2018 Alide_0817 f459cca0c818c7e64db095a34f000374 531 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 481 498 - T 12-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 SUPERFAMILY SSF53697 11 527 1.2E-180 T 12-10-2018 Alide_0817 f459cca0c818c7e64db095a34f000374 531 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 50 508 38.603 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 Gene3D G3DSA:1.10.1390.10 491 529 4.7E-16 T 12-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 Gene3D G3DSA:3.40.50.10490 102 293 6.2E-191 T 12-10-2018 Alide_0817 f459cca0c818c7e64db095a34f000374 531 PRINTS PR00662 Glucose-6-phosphate isomerase signature 153 172 6.2E-53 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 PRINTS PR00662 Glucose-6-phosphate isomerase signature 263 281 6.2E-53 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 PRINTS PR00662 Glucose-6-phosphate isomerase signature 481 494 6.2E-53 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 PRINTS PR00662 Glucose-6-phosphate isomerase signature 449 467 6.2E-53 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 PRINTS PR00662 Glucose-6-phosphate isomerase signature 467 481 6.2E-53 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_0817 f459cca0c818c7e64db095a34f000374 531 PRINTS PR00662 Glucose-6-phosphate isomerase signature 340 361 6.2E-53 T 12-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Alide_1039 f3168955321b9943af676b33a849a0aa 188 Hamap MF_00930 Transcription elongation factor GreB [greB]. 25 181 50.843 T 12-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 Alide_1039 f3168955321b9943af676b33a849a0aa 188 Gene3D G3DSA:1.10.287.180 26 100 5.4E-26 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Alide_1039 f3168955321b9943af676b33a849a0aa 188 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 41 72 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Alide_1039 f3168955321b9943af676b33a849a0aa 188 Gene3D G3DSA:3.10.50.30 104 183 5.4E-26 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Alide_1039 f3168955321b9943af676b33a849a0aa 188 SUPERFAMILY SSF46557 27 102 1.57E-25 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Alide_1039 f3168955321b9943af676b33a849a0aa 188 SUPERFAMILY SSF54534 106 180 5.62E-20 T 12-10-2018 Alide_1039 f3168955321b9943af676b33a849a0aa 188 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 107 180 1.5E-24 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Alide_1039 f3168955321b9943af676b33a849a0aa 188 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 144 160 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Alide_1039 f3168955321b9943af676b33a849a0aa 188 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 27 181 2.5E-65 T 12-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 Alide_1039 f3168955321b9943af676b33a849a0aa 188 PIRSF PIRSF006092 25 182 9.1E-42 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Alide_1039 f3168955321b9943af676b33a849a0aa 188 Pfam PF03449 Transcription elongation factor, N-terminal 28 98 4.6E-23 T 12-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Alide_1039 f3168955321b9943af676b33a849a0aa 188 Hamap MF_00105 Transcription elongation factor GreA [greA]. 26 179 26.079 T 12-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Alide_3948 f12efdd6d65e51bfa6007a45e6d15a1a 216 Gene3D G3DSA:3.40.50.1820 1 214 2.0E-60 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_3948 f12efdd6d65e51bfa6007a45e6d15a1a 216 SUPERFAMILY SSF53474 4 214 1.08E-33 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0747 db1780df285f4411a68cd4a96d425a7c 405 Gene3D G3DSA:3.40.50.2000 192 378 8.6E-72 T 12-10-2018 Alide_0747 db1780df285f4411a68cd4a96d425a7c 405 TIGRFAM TIGR04063 stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family 2 399 2.9E-195 T 12-10-2018 IPR024004 Glycosyltransferase family 1, Daro2409 family Alide_0747 db1780df285f4411a68cd4a96d425a7c 405 Pfam PF13579 Glycosyl transferase 4-like domain 15 190 1.6E-26 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Alide_0747 db1780df285f4411a68cd4a96d425a7c 405 Pfam PF00534 Glycosyl transferases group 1 213 369 1.4E-29 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 Alide_0747 db1780df285f4411a68cd4a96d425a7c 405 SUPERFAMILY SSF53756 2 398 8.79E-76 T 12-10-2018 Alide_0747 db1780df285f4411a68cd4a96d425a7c 405 Gene3D G3DSA:3.40.50.2000 7 395 8.6E-72 T 12-10-2018 Alide_4226 1c614ddaa801bfe75126ce362d3d6b6a 159 Pfam PF13463 Winged helix DNA-binding domain 56 119 1.1E-9 T 12-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Alide_4226 1c614ddaa801bfe75126ce362d3d6b6a 159 SUPERFAMILY SSF46785 44 145 2.44E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4226 1c614ddaa801bfe75126ce362d3d6b6a 159 Gene3D G3DSA:1.10.10.10 9 154 2.3E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0863 6b725d1588c124bfb06df60a1e0011ba 260 Pfam PF02405 Permease MlaE 46 256 2.7E-70 T 12-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 Alide_0863 6b725d1588c124bfb06df60a1e0011ba 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 22 258 2.5E-78 T 12-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 SUPERFAMILY SSF51735 195 429 2.85E-79 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 Gene3D G3DSA:3.40.50.720 195 402 3.4E-74 T 12-10-2018 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 PIRSF PIRSF000185 23 430 6.7E-162 T 12-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 Gene3D G3DSA:1.10.8.1210 1 56 1.0E-25 T 12-10-2018 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 114 127 - T 12-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 228 248 3.9E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 186 208 3.9E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 355 366 3.9E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 106 120 3.9E-32 T 12-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 Gene3D G3DSA:1.10.8.1210 403 430 8.2E-12 T 12-10-2018 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 Gene3D G3DSA:3.40.50.10860 57 194 1.0E-56 T 12-10-2018 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 49 177 8.7E-54 T 12-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 SMART SM00839 197 427 1.2E-101 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 SUPERFAMILY SSF53223 12 197 7.04E-68 T 12-10-2018 Alide_0201 8558800f69b8210bee48ac454d96c2a8 430 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 195 427 4.8E-75 T 12-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Alide_4006 b212fbc25c19171b64b9e9bf0e6b4597 508 Pfam PF00665 Integrase core domain 131 256 2.4E-13 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_4044 b212fbc25c19171b64b9e9bf0e6b4597 508 Pfam PF00665 Integrase core domain 131 256 2.4E-13 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_0473 b212fbc25c19171b64b9e9bf0e6b4597 508 Pfam PF00665 Integrase core domain 131 256 2.4E-13 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_4551 b212fbc25c19171b64b9e9bf0e6b4597 508 Pfam PF00665 Integrase core domain 131 256 2.4E-13 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 SMART SM01002 158 322 1.7E-83 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 13 148 2.6E-47 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 Gene3D G3DSA:3.40.50.720 12 375 3.1E-153 T 12-10-2018 Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 11 536 3.7E-217 T 12-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 SUPERFAMILY SSF52283 11 180 1.28E-54 T 12-10-2018 Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 PIRSF PIRSF000203 10 536 3.9E-236 T 12-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 SUPERFAMILY SSF51735 150 326 1.77E-38 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 Gene3D G3DSA:3.40.50.720 149 329 3.1E-153 T 12-10-2018 Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 445 536 3.8E-34 T 12-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 153 379 3.1E-73 T 12-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Alide_4156 7e7a5ebf901486ef511426af144e34f1 536 SMART SM01003 13 149 2.3E-70 T 12-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Alide_2938 d59ff1281a3e1af86d5b35f622bdfd9b 291 SUPERFAMILY SSF54637 10 159 3.29E-37 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2938 d59ff1281a3e1af86d5b35f622bdfd9b 291 Gene3D G3DSA:3.10.129.10 166 291 9.3E-41 T 12-10-2018 Alide_2938 d59ff1281a3e1af86d5b35f622bdfd9b 291 SUPERFAMILY SSF54637 170 285 3.65E-31 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2938 d59ff1281a3e1af86d5b35f622bdfd9b 291 Pfam PF13452 N-terminal half of MaoC dehydratase 55 141 1.0E-8 T 12-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Alide_2938 d59ff1281a3e1af86d5b35f622bdfd9b 291 Pfam PF01575 MaoC like domain 171 277 2.2E-24 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_2938 d59ff1281a3e1af86d5b35f622bdfd9b 291 Gene3D G3DSA:3.10.129.10 5 161 2.6E-43 T 12-10-2018 Alide_2946 9e418eb63798745b241a6fd67a72eecd 539 PIRSF PIRSF000137 1 535 5.2E-153 T 12-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_2946 9e418eb63798745b241a6fd67a72eecd 539 Gene3D G3DSA:3.30.560.10 42 468 4.9E-177 T 12-10-2018 Alide_2946 9e418eb63798745b241a6fd67a72eecd 539 Pfam PF00732 GMC oxidoreductase 4 293 6.6E-83 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_2946 9e418eb63798745b241a6fd67a72eecd 539 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 253 267 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_2946 9e418eb63798745b241a6fd67a72eecd 539 SUPERFAMILY SSF54373 289 473 3.14E-48 T 12-10-2018 Alide_2946 9e418eb63798745b241a6fd67a72eecd 539 SUPERFAMILY SSF51905 3 531 7.22E-86 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2946 9e418eb63798745b241a6fd67a72eecd 539 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_2946 9e418eb63798745b241a6fd67a72eecd 539 Pfam PF05199 GMC oxidoreductase 387 522 3.1E-42 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Alide_2946 9e418eb63798745b241a6fd67a72eecd 539 Gene3D G3DSA:3.50.50.60 5 521 4.9E-177 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1970 4e15eff67c57044d112da7e02feb710d 386 Gene3D G3DSA:3.40.50.10540 20 366 2.3E-127 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1970 4e15eff67c57044d112da7e02feb710d 386 SUPERFAMILY SSF89796 18 377 1.1E-121 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1970 4e15eff67c57044d112da7e02feb710d 386 Gene3D G3DSA:3.30.1540.10 241 332 2.3E-127 T 12-10-2018 Alide_1970 4e15eff67c57044d112da7e02feb710d 386 Pfam PF02515 CoA-transferase family III 20 376 6.9E-118 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_3100 00eaced734532981e79f6924c22f1301 297 Gene3D G3DSA:1.10.10.10 1 91 8.0E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3100 00eaced734532981e79f6924c22f1301 297 Gene3D G3DSA:3.40.190.10 170 262 2.0E-7 T 12-10-2018 Alide_3100 00eaced734532981e79f6924c22f1301 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.7E-16 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3100 00eaced734532981e79f6924c22f1301 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3100 00eaced734532981e79f6924c22f1301 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3100 00eaced734532981e79f6924c22f1301 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3100 00eaced734532981e79f6924c22f1301 297 SUPERFAMILY SSF46785 1 84 4.31E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3100 00eaced734532981e79f6924c22f1301 297 Gene3D G3DSA:3.40.190.10 116 166 2.0E-7 T 12-10-2018 Alide_3100 00eaced734532981e79f6924c22f1301 297 SUPERFAMILY SSF53850 90 295 2.17E-14 T 12-10-2018 Alide_3100 00eaced734532981e79f6924c22f1301 297 Pfam PF03466 LysR substrate binding domain 90 294 2.4E-13 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4078 7ae732ea235944577b8f6b7825376145 422 Pfam PF02926 THUMP domain 44 159 1.0E-14 T 12-10-2018 IPR004114 THUMP domain GO:0003723 Alide_4078 7ae732ea235944577b8f6b7825376145 422 Gene3D G3DSA:3.30.2130.30 7 259 3.1E-116 T 12-10-2018 Alide_4078 7ae732ea235944577b8f6b7825376145 422 Pfam PF01170 Putative RNA methylase family UPF0020 167 324 3.0E-35 T 12-10-2018 IPR000241 Putative RNA methylase domain Alide_4078 7ae732ea235944577b8f6b7825376145 422 SUPERFAMILY SSF53335 144 401 3.17E-39 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_4078 7ae732ea235944577b8f6b7825376145 422 SMART SM00981 61 159 3.9E-26 T 12-10-2018 IPR004114 THUMP domain GO:0003723 Alide_4078 7ae732ea235944577b8f6b7825376145 422 Gene3D G3DSA:3.40.50.150 174 398 3.1E-116 T 12-10-2018 Alide_2417 376de562a7eec97e183d8cba24befdc5 264 Pfam PF09339 IclR helix-turn-helix domain 16 63 4.4E-11 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2417 376de562a7eec97e183d8cba24befdc5 264 SMART SM00346 11 101 4.6E-15 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2417 376de562a7eec97e183d8cba24befdc5 264 Pfam PF01614 Bacterial transcriptional regulator 130 244 1.7E-15 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_2417 376de562a7eec97e183d8cba24befdc5 264 Gene3D G3DSA:1.10.10.10 10 85 1.3E-16 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2417 376de562a7eec97e183d8cba24befdc5 264 Gene3D G3DSA:3.30.450.40 86 255 6.6E-32 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_2417 376de562a7eec97e183d8cba24befdc5 264 SUPERFAMILY SSF46785 11 84 8.59E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2417 376de562a7eec97e183d8cba24befdc5 264 SUPERFAMILY SSF55781 84 250 4.97E-30 T 12-10-2018 Alide_3999 acba9370a413d7d4da72363eee8cdc05 186 Pfam PF11198 Protein of unknown function (DUF2857) 8 182 4.6E-63 T 12-10-2018 IPR021364 Protein of unknown function DUF2857 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 Hamap MF_02033 Cell division protein FtsA [ftsA]. 5 409 29.33 T 12-10-2018 IPR020823 Cell division protein FtsA Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 375 1.7E-138 T 12-10-2018 IPR020823 Cell division protein FtsA Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 Pfam PF14450 Cell division protein FtsA 205 359 1.0E-21 T 12-10-2018 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 Gene3D G3DSA:3.30.420.40 195 350 1.6E-111 T 12-10-2018 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 Pfam PF14450 Cell division protein FtsA 10 190 8.9E-9 T 12-10-2018 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 SUPERFAMILY SSF53067 196 374 7.78E-46 T 12-10-2018 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 PIRSF PIRSF003101 1 408 1.1E-137 T 12-10-2018 IPR020823 Cell division protein FtsA Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 323 337 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 Gene3D G3DSA:3.30.1490.110 86 167 1.6E-111 T 12-10-2018 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 SUPERFAMILY SSF53067 7 218 7.25E-56 T 12-10-2018 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 Gene3D G3DSA:3.30.420.40 12 369 1.6E-111 T 12-10-2018 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 SMART SM00842 9 194 6.2E-96 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 Pfam PF02491 SHS2 domain inserted in FTSA 84 160 5.0E-27 T 12-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Alide_3702 e5473dbe8682fc7793ab381770f1ac75 409 Gene3D G3DSA:3.90.640.10 233 298 1.6E-111 T 12-10-2018 Alide_2181 0855f9b067301315efd21b2392e631a4 249 Pfam PF10014 2OG-Fe dioxygenase 50 238 4.0E-62 T 12-10-2018 IPR018724 2OG-Fe dioxygenase Alide_2181 0855f9b067301315efd21b2392e631a4 249 Gene3D G3DSA:2.60.120.620 7 248 2.0E-83 T 12-10-2018 Alide_2338 e4390781eda5cecebae11cc85471cf73 237 Gene3D G3DSA:3.30.559.10 1 234 1.3E-69 T 12-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Alide_2338 e4390781eda5cecebae11cc85471cf73 237 SUPERFAMILY SSF52777 15 232 2.89E-64 T 12-10-2018 Alide_2338 e4390781eda5cecebae11cc85471cf73 237 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 14 233 2.6E-65 T 12-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Alide_4199 2cb763b60111a99268e79109eb700257 183 Gene3D G3DSA:2.170.270.10 12 162 1.9E-45 T 12-10-2018 Alide_4199 2cb763b60111a99268e79109eb700257 183 SMART SM00317 16 134 5.1E-31 T 12-10-2018 IPR001214 SET domain GO:0005515 Alide_4199 2cb763b60111a99268e79109eb700257 183 SUPERFAMILY SSF82199 17 154 4.19E-47 T 12-10-2018 Alide_4199 2cb763b60111a99268e79109eb700257 183 Pfam PF00856 SET domain 27 128 1.4E-18 T 12-10-2018 IPR001214 SET domain GO:0005515 Alide_0036 41075d27eca67ee18949e9fabd816874 65 Gene3D G3DSA:3.30.70.100 2 63 4.4E-19 T 12-10-2018 Alide_0036 41075d27eca67ee18949e9fabd816874 65 Pfam PF00403 Heavy-metal-associated domain 4 62 1.5E-12 T 12-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Alide_0036 41075d27eca67ee18949e9fabd816874 65 SUPERFAMILY SSF55008 1 63 2.49E-15 T 12-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Alide_1151 9c6ad1bef126888c06eb01e3cc7dc753 299 Pfam PF13365 Trypsin-like peptidase domain 126 265 2.0E-31 T 12-10-2018 Alide_1151 9c6ad1bef126888c06eb01e3cc7dc753 299 Gene3D G3DSA:2.40.10.120 83 296 3.2E-57 T 12-10-2018 Alide_1151 9c6ad1bef126888c06eb01e3cc7dc753 299 PRINTS PR00834 HtrA/DegQ protease family signature 135 147 3.8E-33 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_1151 9c6ad1bef126888c06eb01e3cc7dc753 299 PRINTS PR00834 HtrA/DegQ protease family signature 258 275 3.8E-33 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_1151 9c6ad1bef126888c06eb01e3cc7dc753 299 PRINTS PR00834 HtrA/DegQ protease family signature 236 253 3.8E-33 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_1151 9c6ad1bef126888c06eb01e3cc7dc753 299 PRINTS PR00834 HtrA/DegQ protease family signature 198 222 3.8E-33 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_1151 9c6ad1bef126888c06eb01e3cc7dc753 299 PRINTS PR00834 HtrA/DegQ protease family signature 156 176 3.8E-33 T 12-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Alide_1151 9c6ad1bef126888c06eb01e3cc7dc753 299 SUPERFAMILY SSF50494 93 291 3.13E-50 T 12-10-2018 IPR009003 Peptidase S1, PA clan Alide_0757 2fbe7f1df7efee755aba0c7f6204b887 482 Pfam PF13440 Polysaccharide biosynthesis protein 28 320 3.3E-54 T 12-10-2018 Alide_1334 59de59476b2ca33111e3eb955e339511 520 SMART SM00155 168 195 0.018 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Alide_1334 59de59476b2ca33111e3eb955e339511 520 SMART SM00155 411 438 1.2E-5 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Alide_1334 59de59476b2ca33111e3eb955e339511 520 Gene3D G3DSA:3.30.870.10 290 474 1.8E-35 T 12-10-2018 Alide_1334 59de59476b2ca33111e3eb955e339511 520 Gene3D G3DSA:3.30.870.10 59 259 2.8E-38 T 12-10-2018 Alide_1334 59de59476b2ca33111e3eb955e339511 520 SUPERFAMILY SSF56024 49 244 3.92E-41 T 12-10-2018 Alide_1334 59de59476b2ca33111e3eb955e339511 520 SUPERFAMILY SSF56024 283 466 4.49E-36 T 12-10-2018 Alide_1334 59de59476b2ca33111e3eb955e339511 520 Pfam PF13091 PLD-like domain 82 227 3.2E-12 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_1334 59de59476b2ca33111e3eb955e339511 520 Pfam PF13091 PLD-like domain 322 464 2.5E-21 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_3351 a0414ab9fb7f382671e994583bae1eb7 391 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 249 278 2.0E-51 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3351 a0414ab9fb7f382671e994583bae1eb7 391 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 220 247 2.0E-51 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3351 a0414ab9fb7f382671e994583bae1eb7 391 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 297 326 2.0E-51 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3351 a0414ab9fb7f382671e994583bae1eb7 391 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 143 172 2.0E-51 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3351 a0414ab9fb7f382671e994583bae1eb7 391 SUPERFAMILY SSF58104 89 370 3.53E-70 T 12-10-2018 Alide_3351 a0414ab9fb7f382671e994583bae1eb7 391 SMART SM00283 122 369 4.4E-85 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3351 a0414ab9fb7f382671e994583bae1eb7 391 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 181 335 5.1E-54 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3351 a0414ab9fb7f382671e994583bae1eb7 391 Gene3D G3DSA:1.10.287.950 69 371 1.9E-85 T 12-10-2018 Alide_0199 409588e0827a9c2c2aa4719953ce41ce 337 PIRSF PIRSF017082 1 337 1.4E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0199 409588e0827a9c2c2aa4719953ce41ce 337 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 332 1.3E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0199 409588e0827a9c2c2aa4719953ce41ce 337 Gene3D G3DSA:3.40.190.150 37 327 1.6E-108 T 12-10-2018 Alide_0199 409588e0827a9c2c2aa4719953ce41ce 337 SUPERFAMILY SSF53850 124 293 1.19E-11 T 12-10-2018 Alide_0199 409588e0827a9c2c2aa4719953ce41ce 337 Gene3D G3DSA:3.40.190.10 135 257 1.6E-108 T 12-10-2018 Alide_4124 23def1f68f555d9243b085a32ea570c7 155 Gene3D G3DSA:3.40.930.10 1 151 3.4E-51 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Alide_4124 23def1f68f555d9243b085a32ea570c7 155 SUPERFAMILY SSF55804 1 149 1.57E-38 T 12-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 Alide_4124 23def1f68f555d9243b085a32ea570c7 155 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 12-10-2018 IPR002178 PTS EIIA type-2 domain Alide_4124 23def1f68f555d9243b085a32ea570c7 155 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 7 146 2.2E-31 T 12-10-2018 IPR002178 PTS EIIA type-2 domain Alide_4258 9f9173607c622ee70bfd7809ed6d4aa0 161 Pfam PF01967 MoaC family 19 154 3.5E-56 T 12-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_4258 9f9173607c622ee70bfd7809ed6d4aa0 161 Gene3D G3DSA:3.30.70.640 5 161 6.4E-70 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_4258 9f9173607c622ee70bfd7809ed6d4aa0 161 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 6 161 34.928 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_4258 9f9173607c622ee70bfd7809ed6d4aa0 161 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 8 156 1.0E-61 T 12-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_4258 9f9173607c622ee70bfd7809ed6d4aa0 161 SUPERFAMILY SSF55040 15 159 7.06E-61 T 12-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Alide_0527 59006bbed1fca3f2f8e3f1c39c11bbe1 167 SUPERFAMILY SSF54637 20 166 5.6E-35 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0527 59006bbed1fca3f2f8e3f1c39c11bbe1 167 Pfam PF01575 MaoC like domain 29 131 8.5E-12 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_0527 59006bbed1fca3f2f8e3f1c39c11bbe1 167 Gene3D G3DSA:3.10.129.10 16 167 5.2E-43 T 12-10-2018 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 SUPERFAMILY SSF52540 138 442 3.05E-60 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 Hamap MF_00195 GTPase Der [der]. 2 438 37.929 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 SUPERFAMILY SSF52540 4 163 2.76E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 Gene3D G3DSA:3.40.50.300 1 160 2.8E-44 T 12-10-2018 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 355 435 4.9E-24 T 12-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 Pfam PF01926 50S ribosome-binding GTPase 182 299 1.1E-22 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 Pfam PF01926 50S ribosome-binding GTPase 5 120 1.2E-26 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 435 7.5E-170 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 73 91 6.4E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 6.4E-9 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 180 338 1.5E-26 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 158 8.9E-22 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 PIRSF PIRSF006485 1 443 6.3E-168 T 12-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 Gene3D G3DSA:3.30.300.20 355 437 9.7E-20 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta Alide_3033 6ebea550c4bc670892b21577f14a66d7 447 Gene3D G3DSA:3.40.50.300 175 352 7.0E-47 T 12-10-2018 Alide_4125 29bfedc56c096185de394a3aa0fa9462 115 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 97 1.8E-23 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Alide_4125 29bfedc56c096185de394a3aa0fa9462 115 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 103 8.3E-29 T 12-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Alide_4125 29bfedc56c096185de394a3aa0fa9462 115 SUPERFAMILY SSF69754 1 102 2.09E-30 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like Alide_4125 29bfedc56c096185de394a3aa0fa9462 115 Gene3D G3DSA:3.30.160.100 2 97 2.7E-31 T 12-10-2018 IPR036567 Ribosome hibernation promotion factor-like Alide_3466 a3a3f60332e688eba1f1e20a01d5a86f 221 SMART SM00448 1 112 1.4E-40 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3466 a3a3f60332e688eba1f1e20a01d5a86f 221 Gene3D G3DSA:3.40.50.2300 1 120 1.2E-36 T 12-10-2018 Alide_3466 a3a3f60332e688eba1f1e20a01d5a86f 221 Pfam PF00072 Response regulator receiver domain 3 112 5.4E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3466 a3a3f60332e688eba1f1e20a01d5a86f 221 SMART SM00862 145 220 1.4E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3466 a3a3f60332e688eba1f1e20a01d5a86f 221 Gene3D G3DSA:1.10.10.10 121 221 2.6E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3466 a3a3f60332e688eba1f1e20a01d5a86f 221 SUPERFAMILY SSF52172 1 176 8.54E-40 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3466 a3a3f60332e688eba1f1e20a01d5a86f 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 5.9E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_0502 a65494c9d1562ff642450c126fda79f8 286 Gene3D G3DSA:3.40.50.11550 52 241 1.4E-29 T 12-10-2018 Alide_0502 a65494c9d1562ff642450c126fda79f8 286 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 49 234 2.2E-33 T 12-10-2018 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN Alide_0502 a65494c9d1562ff642450c126fda79f8 286 Gene3D G3DSA:1.10.8.760 146 199 1.4E-29 T 12-10-2018 Alide_0502 a65494c9d1562ff642450c126fda79f8 286 SUPERFAMILY SSF159501 41 265 8.63E-53 T 12-10-2018 Alide_4206 277d163cec8167600f712cde294a6488 660 SUPERFAMILY SSF56801 31 652 9.16E-155 T 12-10-2018 Alide_4206 277d163cec8167600f712cde294a6488 660 Gene3D G3DSA:3.30.300.30 531 657 2.3E-20 T 12-10-2018 Alide_4206 277d163cec8167600f712cde294a6488 660 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 40 95 6.2E-7 T 12-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 Alide_4206 277d163cec8167600f712cde294a6488 660 Gene3D G3DSA:3.40.50.12780 81 530 9.1E-94 T 12-10-2018 Alide_4206 277d163cec8167600f712cde294a6488 660 ProSitePatterns PS00455 Putative AMP-binding domain signature. 276 287 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_4206 277d163cec8167600f712cde294a6488 660 Pfam PF13193 AMP-binding enzyme C-terminal domain 543 620 1.7E-15 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_4206 277d163cec8167600f712cde294a6488 660 Pfam PF00501 AMP-binding enzyme 104 534 9.4E-76 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_4155 a0663f6255ee2c64c65e18699ecd997b 470 PIRSF PIRSF000204 1 470 1.8E-217 T 12-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 Alide_4155 a0663f6255ee2c64c65e18699ecd997b 470 Gene3D G3DSA:3.40.50.1220 292 470 3.0E-88 T 12-10-2018 Alide_4155 a0663f6255ee2c64c65e18699ecd997b 470 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 465 1.6E-200 T 12-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 Alide_4155 a0663f6255ee2c64c65e18699ecd997b 470 SUPERFAMILY SSF52467 296 469 6.54E-77 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_3992 063206b771f8e1019111844de6bd54bb 343 Gene3D G3DSA:1.20.970.10 1 71 5.7E-33 T 12-10-2018 Alide_3992 063206b771f8e1019111844de6bd54bb 343 SUPERFAMILY SSF52418 77 339 6.02E-99 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Alide_3992 063206b771f8e1019111844de6bd54bb 343 Pfam PF00591 Glycosyl transferase family, a/b domain 77 327 4.6E-96 T 12-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Alide_3992 063206b771f8e1019111844de6bd54bb 343 SUPERFAMILY SSF47648 3 70 3.27E-16 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Alide_3992 063206b771f8e1019111844de6bd54bb 343 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 1.0E-11 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Alide_3992 063206b771f8e1019111844de6bd54bb 343 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 6 336 37.633 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Alide_3992 063206b771f8e1019111844de6bd54bb 343 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 335 4.3E-125 T 12-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Alide_3992 063206b771f8e1019111844de6bd54bb 343 Gene3D G3DSA:3.40.1030.10 72 343 1.3E-109 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Alide_2434 f45015ca4312cb8884633cc79ef4e530 258 Gene3D G3DSA:3.40.50.12500 25 258 1.7E-68 T 12-10-2018 Alide_2434 f45015ca4312cb8884633cc79ef4e530 258 Pfam PF01177 Asp/Glu/Hydantoin racemase 91 239 1.3E-9 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_2434 f45015ca4312cb8884633cc79ef4e530 258 PIRSF PIRSF015736 11 258 2.7E-88 T 12-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase Alide_0181 76472b53d43c7d5c450590b7298df232 139 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 25 57 5.3E-8 T 12-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Alide_0181 76472b53d43c7d5c450590b7298df232 139 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 59 118 1.4E-14 T 12-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Alide_0181 76472b53d43c7d5c450590b7298df232 139 SUPERFAMILY SSF50249 10 126 2.23E-27 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0181 76472b53d43c7d5c450590b7298df232 139 Gene3D G3DSA:1.10.12.20 15 61 8.7E-6 T 12-10-2018 Alide_1168 1f5aebc31a768c4a4cf8bd122d7fec59 321 Gene3D G3DSA:1.20.1530.20 7 320 7.9E-33 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily Alide_1168 1f5aebc31a768c4a4cf8bd122d7fec59 321 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 9 319 1.0E-92 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter Alide_1168 1f5aebc31a768c4a4cf8bd122d7fec59 321 PIRSF PIRSF026166 1 321 9.2E-125 T 12-10-2018 IPR016833 Putative sodium bile acid cotransporter Alide_0365 6a8ff217ed01b5f09814cadbd35bb38b 340 SUPERFAMILY SSF51556 30 339 1.91E-38 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_0365 6a8ff217ed01b5f09814cadbd35bb38b 340 Pfam PF04909 Amidohydrolase 32 339 6.7E-34 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_0365 6a8ff217ed01b5f09814cadbd35bb38b 340 Gene3D G3DSA:3.20.20.140 29 340 1.7E-73 T 12-10-2018 Alide_2560 111fcd391a5547554c1a4d93ec53a7ba 277 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 85 219 2.8E-29 T 12-10-2018 IPR006342 Methyltransferase FkbM Alide_2560 111fcd391a5547554c1a4d93ec53a7ba 277 Pfam PF05050 Methyltransferase FkbM domain 88 244 3.9E-16 T 12-10-2018 IPR006342 Methyltransferase FkbM Alide_2560 111fcd391a5547554c1a4d93ec53a7ba 277 SUPERFAMILY SSF53335 43 249 1.48E-49 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2560 111fcd391a5547554c1a4d93ec53a7ba 277 Gene3D G3DSA:3.40.50.150 74 262 1.6E-36 T 12-10-2018 Alide_4622 2b629788693e925b93b53cbbd0a8b0e7 298 Pfam PF13700 Domain of unknown function (DUF4158) 13 169 7.2E-24 T 12-10-2018 IPR025296 Domain of unknown function DUF4158 Alide_3693 6dc96f5aa10d0566fc666388f55141e7 307 SUPERFAMILY SSF54211 3 124 3.03E-39 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_3693 6dc96f5aa10d0566fc666388f55141e7 307 Gene3D G3DSA:3.30.230.20 1 127 4.0E-45 T 12-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Alide_3693 6dc96f5aa10d0566fc666388f55141e7 307 SUPERFAMILY SSF54211 134 282 6.9E-48 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_3693 6dc96f5aa10d0566fc666388f55141e7 307 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 279 7.5E-102 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Alide_3693 6dc96f5aa10d0566fc666388f55141e7 307 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 283 44.148 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Alide_3693 6dc96f5aa10d0566fc666388f55141e7 307 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3 303 4.1E-111 T 12-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Alide_3693 6dc96f5aa10d0566fc666388f55141e7 307 Gene3D G3DSA:3.30.1700.10 128 307 7.7E-65 T 12-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Alide_3547 c89f8b26c0e23a6e612f6deb7a908383 337 Pfam PF03864 Phage major capsid protein E 12 335 9.5E-85 T 12-10-2018 IPR005564 Major capsid protein GpE Alide_2435 a85b648585968ee427ccda78e46d3cb5 377 Gene3D G3DSA:3.40.50.2300 152 278 3.5E-69 T 12-10-2018 Alide_2435 a85b648585968ee427ccda78e46d3cb5 377 Gene3D G3DSA:3.40.50.2300 36 339 3.5E-69 T 12-10-2018 Alide_2435 a85b648585968ee427ccda78e46d3cb5 377 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 56 72 1.3E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2435 a85b648585968ee427ccda78e46d3cb5 377 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 34 50 1.3E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2435 a85b648585968ee427ccda78e46d3cb5 377 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 282 295 1.3E-5 T 12-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Alide_2435 a85b648585968ee427ccda78e46d3cb5 377 SUPERFAMILY SSF53822 32 376 3.08E-73 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2435 a85b648585968ee427ccda78e46d3cb5 377 Pfam PF13458 Periplasmic binding protein 33 359 2.2E-55 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_4350 5e16d3edec0eb77687049393ecd509c9 411 Gene3D G3DSA:3.30.1540.10 247 339 4.2E-113 T 12-10-2018 Alide_4350 5e16d3edec0eb77687049393ecd509c9 411 Gene3D G3DSA:3.40.50.10540 19 405 4.2E-113 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4350 5e16d3edec0eb77687049393ecd509c9 411 Pfam PF02515 CoA-transferase family III 19 388 7.1E-109 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_4350 5e16d3edec0eb77687049393ecd509c9 411 SUPERFAMILY SSF89796 17 411 3.4E-117 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0910 c5b95bbfb9c8461721dc45de5738232c 409 Gene3D G3DSA:3.10.20.340 280 409 8.9E-43 T 12-10-2018 Alide_0910 c5b95bbfb9c8461721dc45de5738232c 409 Pfam PF01960 ArgJ family 22 409 6.2E-143 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Alide_0910 c5b95bbfb9c8461721dc45de5738232c 409 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 409 158.998 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Alide_0910 c5b95bbfb9c8461721dc45de5738232c 409 Gene3D G3DSA:3.60.70.12 10 279 6.4E-90 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Alide_0910 c5b95bbfb9c8461721dc45de5738232c 409 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 16 409 6.1E-123 T 12-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Alide_0910 c5b95bbfb9c8461721dc45de5738232c 409 SUPERFAMILY SSF56266 16 406 4.32E-137 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Alide_0910 c5b95bbfb9c8461721dc45de5738232c 409 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 27 407 4.0E-153 T 12-10-2018 Alide_4355 6a65d6bc21a7a92f0e367309890025ec 555 SUPERFAMILY SSF51905 52 383 5.61E-33 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4355 6a65d6bc21a7a92f0e367309890025ec 555 Gene3D G3DSA:3.50.50.60 49 388 3.4E-31 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4355 6a65d6bc21a7a92f0e367309890025ec 555 Pfam PF01593 Flavin containing amine oxidoreductase 62 378 5.3E-17 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Alide_0103 df0a62443f479f474cc7b1e7e7c950e0 325 Gene3D G3DSA:3.40.190.10 127 250 2.5E-110 T 12-10-2018 Alide_0103 df0a62443f479f474cc7b1e7e7c950e0 325 PIRSF PIRSF017082 2 325 7.9E-84 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0103 df0a62443f479f474cc7b1e7e7c950e0 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 321 1.0E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0103 df0a62443f479f474cc7b1e7e7c950e0 325 Gene3D G3DSA:3.40.190.150 30 315 2.5E-110 T 12-10-2018 Alide_0103 df0a62443f479f474cc7b1e7e7c950e0 325 SUPERFAMILY SSF53850 114 279 1.09E-13 T 12-10-2018 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 TIGRFAM TIGR01083 nth: endonuclease III 9 194 8.2E-80 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 SMART SM00525 186 206 0.0041 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 PIRSF PIRSF001435 3 210 1.7E-46 T 12-10-2018 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 SUPERFAMILY SSF48150 2 208 7.38E-70 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 12-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 Pfam PF00633 Helix-hairpin-helix motif 99 127 1.4E-9 T 12-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 12-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.5E-4 T 12-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 Hamap MF_00942 Endonuclease III [nth]. 1 209 35.969 T 12-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 168 1.9E-17 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 Gene3D G3DSA:1.10.1670.10 12 203 1.3E-72 T 12-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 SMART SM00478 38 185 1.2E-53 T 12-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Alide_3241 e36ee863bf37c9b1e241908b58b786c5 212 Gene3D G3DSA:1.10.340.30 21 132 1.3E-72 T 12-10-2018 Alide_1539 48c9c158efe4925ac1096d866664463d 387 PRINTS PR01035 Tetracycline resistance protein signature 247 267 1.8E-5 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Alide_1539 48c9c158efe4925ac1096d866664463d 387 PRINTS PR01035 Tetracycline resistance protein signature 40 59 1.8E-5 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Alide_1539 48c9c158efe4925ac1096d866664463d 387 PRINTS PR01035 Tetracycline resistance protein signature 335 358 1.8E-5 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Alide_1539 48c9c158efe4925ac1096d866664463d 387 PRINTS PR01035 Tetracycline resistance protein signature 130 152 1.8E-5 T 12-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Alide_1539 48c9c158efe4925ac1096d866664463d 387 Gene3D G3DSA:1.20.1250.20 213 387 1.1E-15 T 12-10-2018 Alide_1539 48c9c158efe4925ac1096d866664463d 387 Gene3D G3DSA:1.20.1250.20 2 192 9.3E-18 T 12-10-2018 Alide_1539 48c9c158efe4925ac1096d866664463d 387 SUPERFAMILY SSF103473 3 385 1.44E-43 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1539 48c9c158efe4925ac1096d866664463d 387 Pfam PF07690 Major Facilitator Superfamily 216 377 1.7E-12 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_1539 48c9c158efe4925ac1096d866664463d 387 Pfam PF07690 Major Facilitator Superfamily 9 187 1.1E-17 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 Pfam PF02779 Transketolase, pyrimidine binding domain 363 520 1.1E-36 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 SUPERFAMILY SSF52518 6 315 1.42E-97 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 SUPERFAMILY SSF52518 364 522 3.82E-54 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 TIGRFAM TIGR00232 tktlase_bact: transketolase 9 658 1.8E-210 T 12-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 Pfam PF02780 Transketolase, C-terminal domain 546 650 1.6E-11 T 12-10-2018 IPR033248 Transketolase, C-terminal domain Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 9 330 9.7E-115 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 Gene3D G3DSA:3.40.50.970 3 323 8.5E-101 T 12-10-2018 Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 SMART SM00861 351 521 7.8E-46 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 SUPERFAMILY SSF52922 531 659 5.0E-37 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 Gene3D G3DSA:3.40.50.920 534 659 1.1E-38 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2375 5f15c4fdb7423d53b19e48ff8834d508 660 Gene3D G3DSA:3.40.50.970 324 528 1.1E-64 T 12-10-2018 Alide_0304 189e11e8b4434394c6b5eed814cee9c4 288 Gene3D G3DSA:1.10.10.10 1 89 7.2E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0304 189e11e8b4434394c6b5eed814cee9c4 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.8E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0304 189e11e8b4434394c6b5eed814cee9c4 288 Gene3D G3DSA:3.40.190.290 90 286 4.6E-29 T 12-10-2018 Alide_0304 189e11e8b4434394c6b5eed814cee9c4 288 SUPERFAMILY SSF46785 1 109 2.72E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0304 189e11e8b4434394c6b5eed814cee9c4 288 SUPERFAMILY SSF53850 87 281 3.34E-29 T 12-10-2018 Alide_0304 189e11e8b4434394c6b5eed814cee9c4 288 Pfam PF03466 LysR substrate binding domain 85 283 6.8E-32 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0304 189e11e8b4434394c6b5eed814cee9c4 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0304 189e11e8b4434394c6b5eed814cee9c4 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0304 189e11e8b4434394c6b5eed814cee9c4 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2040 e7a5ab811dc97e0ae7c6c1a35ff23b2c 428 Pfam PF01425 Amidase 26 412 7.0E-63 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_2040 e7a5ab811dc97e0ae7c6c1a35ff23b2c 428 Gene3D G3DSA:3.90.1300.10 6 425 8.8E-113 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_2040 e7a5ab811dc97e0ae7c6c1a35ff23b2c 428 SUPERFAMILY SSF75304 5 419 7.85E-99 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_1297 ffd593cfed9d097d56340327895dde6b 322 PIRSF PIRSF017082 1 321 8.5E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1297 ffd593cfed9d097d56340327895dde6b 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 314 3.0E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1297 ffd593cfed9d097d56340327895dde6b 322 SUPERFAMILY SSF53850 113 283 4.35E-13 T 12-10-2018 Alide_1297 ffd593cfed9d097d56340327895dde6b 322 Gene3D G3DSA:3.40.190.10 126 247 1.2E-99 T 12-10-2018 Alide_1297 ffd593cfed9d097d56340327895dde6b 322 Gene3D G3DSA:3.40.190.150 29 311 1.2E-99 T 12-10-2018 Alide_1806 185c9710d9b7460b1fc92e8538035739 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 2.5E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1806 185c9710d9b7460b1fc92e8538035739 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 2.5E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1806 185c9710d9b7460b1fc92e8538035739 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 2.5E-14 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1806 185c9710d9b7460b1fc92e8538035739 269 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 265 9.6E-62 T 12-10-2018 Alide_1806 185c9710d9b7460b1fc92e8538035739 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 228 248 2.7E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1806 185c9710d9b7460b1fc92e8538035739 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.7E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1806 185c9710d9b7460b1fc92e8538035739 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.7E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1806 185c9710d9b7460b1fc92e8538035739 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.7E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1806 185c9710d9b7460b1fc92e8538035739 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.7E-32 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1806 185c9710d9b7460b1fc92e8538035739 269 Gene3D G3DSA:3.40.50.720 1 269 7.7E-81 T 12-10-2018 Alide_1806 185c9710d9b7460b1fc92e8538035739 269 SUPERFAMILY SSF51735 6 266 4.38E-77 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1806 185c9710d9b7460b1fc92e8538035739 269 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_3760 5bcb2af9f0efeaa7722592ff8fc9fe09 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 395 4.5E-23 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3760 5bcb2af9f0efeaa7722592ff8fc9fe09 398 SUPERFAMILY SSF47203 231 398 1.93E-22 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3760 5bcb2af9f0efeaa7722592ff8fc9fe09 398 SUPERFAMILY SSF56645 1 243 2.75E-78 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3760 5bcb2af9f0efeaa7722592ff8fc9fe09 398 Gene3D G3DSA:2.40.110.10 125 234 1.8E-37 T 12-10-2018 Alide_3760 5bcb2af9f0efeaa7722592ff8fc9fe09 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 207 1.1E-21 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3760 5bcb2af9f0efeaa7722592ff8fc9fe09 398 Gene3D G3DSA:1.10.540.10 1 120 2.3E-33 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3760 5bcb2af9f0efeaa7722592ff8fc9fe09 398 Gene3D G3DSA:1.20.140.10 235 398 9.2E-36 T 12-10-2018 Alide_3760 5bcb2af9f0efeaa7722592ff8fc9fe09 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 120 8.3E-26 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_1570 eb8ece983074434f55663953972b2608 282 Pfam PF00892 EamA-like transporter family 149 278 7.8E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_1570 eb8ece983074434f55663953972b2608 282 Pfam PF00892 EamA-like transporter family 18 136 4.8E-7 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_1570 eb8ece983074434f55663953972b2608 282 SUPERFAMILY SSF103481 185 281 3.27E-13 T 12-10-2018 Alide_1570 eb8ece983074434f55663953972b2608 282 SUPERFAMILY SSF103481 44 139 7.32E-9 T 12-10-2018 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 Gene3D G3DSA:2.120.10.90 529 767 8.3E-20 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 SUPERFAMILY SSF101904 531 767 6.15E-43 T 12-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 Gene3D G3DSA:3.90.199.10 39 516 3.2E-182 T 12-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 18 772 8.8E-226 T 12-10-2018 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 SUPERFAMILY SSF56719 38 516 1.7E-143 T 12-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 Gene3D G3DSA:1.10.268.10 402 487 3.2E-182 T 12-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 Gene3D G3DSA:3.30.1360.40 248 364 3.2E-182 T 12-10-2018 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 SMART SM00434 18 494 3.9E-209 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 11 778 32.534 T 12-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 39 499 1.0E-125 T 12-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 683 726 4.5E-6 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Alide_1107 b4ea78688f5fbd5010d1ce5abfe1d933 780 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 574 600 0.43 T 12-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Alide_3610 a3f5da806d2d5b8ee70faf33fc03113d 300 Gene3D G3DSA:1.10.357.140 23 175 4.5E-15 T 12-10-2018 Alide_3610 a3f5da806d2d5b8ee70faf33fc03113d 300 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 16 298 15.897 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Alide_3610 a3f5da806d2d5b8ee70faf33fc03113d 300 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 19 296 5.6E-80 T 12-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 Alide_3610 a3f5da806d2d5b8ee70faf33fc03113d 300 Pfam PF01040 UbiA prenyltransferase family 33 282 1.0E-52 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Alide_0123 baa7f961bc8499f0a00e1045b9a18ee6 226 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 12 199 1.8E-59 T 12-10-2018 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein Alide_0123 baa7f961bc8499f0a00e1045b9a18ee6 226 Pfam PF13353 4Fe-4S single cluster domain 27 97 4.8E-7 T 12-10-2018 Alide_0123 baa7f961bc8499f0a00e1045b9a18ee6 226 Pfam PF04055 Radical SAM superfamily 30 162 1.9E-14 T 12-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Alide_0123 baa7f961bc8499f0a00e1045b9a18ee6 226 Gene3D G3DSA:3.20.20.70 10 208 2.8E-32 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0123 baa7f961bc8499f0a00e1045b9a18ee6 226 SUPERFAMILY SSF102114 24 205 9.81E-23 T 12-10-2018 Alide_3521 2830791f8419bf18c5f28f639261aa55 337 Gene3D G3DSA:3.40.190.10 137 261 1.7E-71 T 12-10-2018 Alide_3521 2830791f8419bf18c5f28f639261aa55 337 Gene3D G3DSA:3.40.190.150 39 326 1.7E-71 T 12-10-2018 Alide_3521 2830791f8419bf18c5f28f639261aa55 337 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 59 333 7.9E-50 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3521 2830791f8419bf18c5f28f639261aa55 337 SUPERFAMILY SSF53850 40 288 7.6E-9 T 12-10-2018 Alide_3521 2830791f8419bf18c5f28f639261aa55 337 PIRSF PIRSF017082 1 337 8.2E-54 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3110 9f7b1e4ba7108745bff7d7cffcdb19b1 491 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 362 391 4.9E-47 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3110 9f7b1e4ba7108745bff7d7cffcdb19b1 491 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 314 343 4.9E-47 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3110 9f7b1e4ba7108745bff7d7cffcdb19b1 491 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 208 237 4.9E-47 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3110 9f7b1e4ba7108745bff7d7cffcdb19b1 491 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 285 312 4.9E-47 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3110 9f7b1e4ba7108745bff7d7cffcdb19b1 491 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 246 401 4.5E-49 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3110 9f7b1e4ba7108745bff7d7cffcdb19b1 491 SUPERFAMILY SSF58104 184 429 1.1E-62 T 12-10-2018 Alide_3110 9f7b1e4ba7108745bff7d7cffcdb19b1 491 Gene3D G3DSA:1.10.287.950 143 430 1.9E-73 T 12-10-2018 Alide_3110 9f7b1e4ba7108745bff7d7cffcdb19b1 491 SMART SM00283 187 428 1.5E-81 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 SMART SM00490 514 597 4.3E-21 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 Pfam PF00271 Helicase conserved C-terminal domain 487 596 2.7E-17 T 12-10-2018 IPR001650 Helicase, C-terminal Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 SUPERFAMILY SSF52540 461 667 2.46E-41 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 SUPERFAMILY SSF52540 216 462 1.02E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 Gene3D G3DSA:3.40.50.300 212 458 1.1E-80 T 12-10-2018 Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 SMART SM00487 270 468 4.0E-27 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 SUPERFAMILY SSF50249 20 167 1.44E-24 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 Gene3D G3DSA:2.40.50.140 45 137 2.9E-10 T 12-10-2018 Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 Gene3D G3DSA:3.40.50.300 466 642 2.7E-56 T 12-10-2018 Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 32 676 7.3E-205 T 12-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 Pfam PF00270 DEAD/DEAH box helicase 298 442 4.1E-14 T 12-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Alide_3982 afbb03cc5d73b14fe3f25468d07f8a81 705 Pfam PF17191 RecG wedge domain 20 166 6.6E-12 T 12-10-2018 IPR033454 RecG, wedge domain Alide_2068 9d74bc41cbebe43c59e72a1b344396bb 119 Pfam PF13272 Putative 2/3 transmembrane domain holin 15 119 1.7E-35 T 12-10-2018 IPR025140 Putative 2/3 transmembrane domain holin Alide_1452 4aa9499017e3a6794f025c4958c46c1f 161 ProSitePatterns PS00079 Multicopper oxidases signature 1. 137 157 - T 12-10-2018 IPR033138 Multicopper oxidases, conserved site Alide_1452 4aa9499017e3a6794f025c4958c46c1f 161 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 58 159 3.1E-6 T 12-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 Alide_1452 4aa9499017e3a6794f025c4958c46c1f 161 SUPERFAMILY SSF49503 49 159 1.02E-29 T 12-10-2018 IPR008972 Cupredoxin Alide_1452 4aa9499017e3a6794f025c4958c46c1f 161 Gene3D G3DSA:2.60.40.420 37 161 7.5E-31 T 12-10-2018 IPR008972 Cupredoxin Alide_2626 91934756a70e10eb4260a38ac3943683 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 7 134 6.3E-29 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Alide_2626 91934756a70e10eb4260a38ac3943683 141 Gene3D G3DSA:3.30.420.270 60 131 2.5E-9 T 12-10-2018 Alide_1919 404a87a2a15995c7e302e599d07399fa 365 Pfam PF04143 Sulphur transport 43 354 1.2E-43 T 12-10-2018 IPR007272 Sulphur transport domain Alide_2162 642f70f598a33d127afaf72af187590b 574 Gene3D G3DSA:1.10.760.10 50 146 9.7E-34 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2162 642f70f598a33d127afaf72af187590b 574 Pfam PF02239 Cytochrome D1 heme domain 175 569 2.0E-153 T 12-10-2018 Alide_2162 642f70f598a33d127afaf72af187590b 574 SUPERFAMILY SSF46626 7 159 8.33E-19 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2162 642f70f598a33d127afaf72af187590b 574 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 67 138 1.1E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2162 642f70f598a33d127afaf72af187590b 574 Gene3D G3DSA:2.140.10.20 147 574 8.7E-194 T 12-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily Alide_2162 642f70f598a33d127afaf72af187590b 574 SUPERFAMILY SSF51004 147 574 4.45E-121 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily Alide_2187 dd37115cb4e1d545b374a7f6d22e09d1 225 Gene3D G3DSA:3.30.2350.10 7 223 3.0E-62 T 12-10-2018 Alide_2187 dd37115cb4e1d545b374a7f6d22e09d1 225 Pfam PF00849 RNA pseudouridylate synthase 22 176 3.8E-30 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_2187 dd37115cb4e1d545b374a7f6d22e09d1 225 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 59 73 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_2187 dd37115cb4e1d545b374a7f6d22e09d1 225 SUPERFAMILY SSF55120 9 224 1.38E-57 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_0246 eadaa62dc9d06e6650f220c0ce346f32 280 SUPERFAMILY SSF81301 3 166 8.17E-27 T 12-10-2018 Alide_0246 eadaa62dc9d06e6650f220c0ce346f32 280 Gene3D G3DSA:3.30.460.10 1 115 9.7E-16 T 12-10-2018 Alide_0246 eadaa62dc9d06e6650f220c0ce346f32 280 SMART SM00954 3 135 4.3E-13 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 Alide_0246 eadaa62dc9d06e6650f220c0ce346f32 280 Pfam PF04607 Region found in RelA / SpoT proteins 4 132 1.4E-15 T 12-10-2018 IPR007685 RelA/SpoT GO:0015969 Alide_2171 98636f939179a2eb9a13fedd0903d5e9 364 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 346 5.6E-111 T 12-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 Alide_2171 98636f939179a2eb9a13fedd0903d5e9 364 SUPERFAMILY SSF103473 14 353 5.23E-6 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_2171 98636f939179a2eb9a13fedd0903d5e9 364 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 345 7.5E-54 T 12-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Alide_0223 12aa71bf1d627c4172d51b84b37d4344 530 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 207 507 5.5E-48 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_0223 12aa71bf1d627c4172d51b84b37d4344 530 SUPERFAMILY SSF111369 227 449 7.98E-25 T 12-10-2018 Alide_0223 12aa71bf1d627c4172d51b84b37d4344 530 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 213 445 1.8E-42 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_0223 12aa71bf1d627c4172d51b84b37d4344 530 Gene3D G3DSA:2.40.50.100 230 372 8.2E-78 T 12-10-2018 Alide_0223 12aa71bf1d627c4172d51b84b37d4344 530 Gene3D G3DSA:2.40.420.20 206 506 8.2E-78 T 12-10-2018 Alide_0223 12aa71bf1d627c4172d51b84b37d4344 530 Gene3D G3DSA:1.10.287.470 264 334 8.2E-78 T 12-10-2018 Alide_0223 12aa71bf1d627c4172d51b84b37d4344 530 Gene3D G3DSA:2.40.30.170 216 451 8.2E-78 T 12-10-2018 Alide_4525 760ce1fe712ede6e3503f6cc29076618 258 Gene3D G3DSA:3.20.20.450 62 224 1.5E-11 T 12-10-2018 IPR035919 EAL domain superfamily Alide_4525 760ce1fe712ede6e3503f6cc29076618 258 SMART SM00052 17 222 2.8E-4 T 12-10-2018 IPR001633 EAL domain Alide_4525 760ce1fe712ede6e3503f6cc29076618 258 SUPERFAMILY SSF141868 32 216 1.29E-18 T 12-10-2018 IPR035919 EAL domain superfamily Alide_1537 74ecb9df59053ab0efbde8b28a4a10d3 326 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 150 178 - T 12-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Alide_1537 74ecb9df59053ab0efbde8b28a4a10d3 326 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 321 2.3E-26 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Alide_1537 74ecb9df59053ab0efbde8b28a4a10d3 326 SUPERFAMILY SSF51735 102 290 3.82E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1537 74ecb9df59053ab0efbde8b28a4a10d3 326 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 289 1.3E-58 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Alide_1537 74ecb9df59053ab0efbde8b28a4a10d3 326 Gene3D G3DSA:3.40.50.720 99 289 9.6E-112 T 12-10-2018 Alide_1537 74ecb9df59053ab0efbde8b28a4a10d3 326 SUPERFAMILY SSF52283 4 136 1.34E-34 T 12-10-2018 Alide_1537 74ecb9df59053ab0efbde8b28a4a10d3 326 Gene3D G3DSA:3.40.50.720 5 313 9.6E-112 T 12-10-2018 Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 SUPERFAMILY SSF48592 7 521 2.06E-77 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 Gene3D G3DSA:3.30.260.10 136 410 3.6E-235 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 PRINTS PR00298 60kDa chaperonin signature 83 110 3.3E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 PRINTS PR00298 60kDa chaperonin signature 268 291 3.3E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 PRINTS PR00298 60kDa chaperonin signature 350 375 3.3E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 PRINTS PR00298 60kDa chaperonin signature 398 419 3.3E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 PRINTS PR00298 60kDa chaperonin signature 27 53 3.3E-74 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 SUPERFAMILY SSF52029 184 376 2.79E-83 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 3.4E-254 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 Gene3D G3DSA:1.10.560.10 8 521 3.6E-235 T 12-10-2018 IPR027413 GroEL-like equatorial domain superfamily Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.595 T 12-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 SUPERFAMILY SSF54849 139 203 5.49E-24 T 12-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 12-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 Gene3D G3DSA:3.50.7.10 192 372 3.6E-235 T 12-10-2018 IPR027409 GroEL-like apical domain superfamily Alide_0818 b552b2e690a67fe632a1325c72c0d9db 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 3.6E-98 T 12-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Alide_0734 e6e9e95d2220b93d65e06ce574b9ff73 268 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 243 266 7.7E-5 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_0734 e6e9e95d2220b93d65e06ce574b9ff73 268 Pfam PF00092 von Willebrand factor type A domain 35 172 2.8E-12 T 12-10-2018 IPR002035 von Willebrand factor, type A Alide_0734 e6e9e95d2220b93d65e06ce574b9ff73 268 Gene3D G3DSA:3.40.50.410 29 195 2.1E-20 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Alide_0734 e6e9e95d2220b93d65e06ce574b9ff73 268 SUPERFAMILY SSF53300 31 188 2.07E-19 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Alide_0734 e6e9e95d2220b93d65e06ce574b9ff73 268 SMART SM00327 30 209 1.9E-11 T 12-10-2018 IPR002035 von Willebrand factor, type A Alide_0734 e6e9e95d2220b93d65e06ce574b9ff73 268 Pfam PF07589 PEP-CTERM motif 242 264 3.4E-6 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_0814 8c83e10d39a6c711b40946bbdf338b4e 164 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 24 162 6.4E-39 T 12-10-2018 IPR005247 YbhB/YbcL Alide_0814 8c83e10d39a6c711b40946bbdf338b4e 164 SUPERFAMILY SSF49777 4 163 1.31E-52 T 12-10-2018 IPR036610 PEBP-like superfamily Alide_0814 8c83e10d39a6c711b40946bbdf338b4e 164 Gene3D G3DSA:3.90.280.10 1 164 1.1E-55 T 12-10-2018 IPR036610 PEBP-like superfamily Alide_0814 8c83e10d39a6c711b40946bbdf338b4e 164 Pfam PF01161 Phosphatidylethanolamine-binding protein 29 162 2.9E-36 T 12-10-2018 IPR008914 Phosphatidylethanolamine-binding protein Alide_0765 fb1d096cf269bc9b90cd797533cbade1 284 Gene3D G3DSA:3.40.50.1820 11 206 3.3E-24 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0765 fb1d096cf269bc9b90cd797533cbade1 284 Pfam PF12146 Serine aminopeptidase, S33 36 159 2.0E-7 T 12-10-2018 IPR022742 Serine aminopeptidase, S33 Alide_0765 fb1d096cf269bc9b90cd797533cbade1 284 SUPERFAMILY SSF53474 10 151 3.42E-21 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0765 fb1d096cf269bc9b90cd797533cbade1 284 TIGRFAM TIGR03101 hydr2_PEP: exosortase A system-associated hydrolase 2 11 276 1.2E-84 T 12-10-2018 IPR017532 Hydrolase, ortholog 2, exosortase system type 1 associated Alide_0890 c1d42db8a15394b418fa87f60fa9efcb 259 Pfam PF00977 Histidine biosynthesis protein 5 242 1.8E-88 T 12-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Alide_0890 c1d42db8a15394b418fa87f60fa9efcb 259 SUPERFAMILY SSF51366 1 258 4.24E-83 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Alide_0890 c1d42db8a15394b418fa87f60fa9efcb 259 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 258 48.862 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Alide_0890 c1d42db8a15394b418fa87f60fa9efcb 259 Gene3D G3DSA:3.20.20.70 1 259 7.1E-109 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0890 c1d42db8a15394b418fa87f60fa9efcb 259 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 258 1.4E-111 T 12-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Alide_3382 3b59095572675bfaa7dadbe1679d9d94 206 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_3382 3b59095572675bfaa7dadbe1679d9d94 206 PRINTS PR00354 7Fe ferredoxin signature 82 99 4.1E-5 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Alide_3382 3b59095572675bfaa7dadbe1679d9d94 206 PRINTS PR00354 7Fe ferredoxin signature 65 75 4.1E-5 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Alide_3382 3b59095572675bfaa7dadbe1679d9d94 206 PRINTS PR00354 7Fe ferredoxin signature 55 65 4.1E-5 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Alide_3382 3b59095572675bfaa7dadbe1679d9d94 206 SUPERFAMILY SSF54862 1 180 3.45E-50 T 12-10-2018 Alide_3382 3b59095572675bfaa7dadbe1679d9d94 206 Gene3D G3DSA:3.30.70.20 5 169 9.9E-36 T 12-10-2018 Alide_3382 3b59095572675bfaa7dadbe1679d9d94 206 Pfam PF13247 4Fe-4S dicluster domain 52 123 8.9E-10 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3382 3b59095572675bfaa7dadbe1679d9d94 206 Gene3D G3DSA:3.30.70.20 61 118 9.9E-36 T 12-10-2018 Alide_0673 c55687a19fbabd971a276ea1339b904d 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 74 1.0E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0673 c55687a19fbabd971a276ea1339b904d 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 43 9.0E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0673 c55687a19fbabd971a276ea1339b904d 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 51 74 9.0E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_0673 c55687a19fbabd971a276ea1339b904d 211 SUPERFAMILY SSF48498 100 205 2.53E-5 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_0673 c55687a19fbabd971a276ea1339b904d 211 SUPERFAMILY SSF46689 17 93 1.33E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0673 c55687a19fbabd971a276ea1339b904d 211 Gene3D G3DSA:1.10.357.10 25 211 5.8E-54 T 12-10-2018 Alide_3008 659d7e32d1f9e186b5c8f707f3f68b89 236 Gene3D G3DSA:3.40.50.2300 3 129 4.2E-32 T 12-10-2018 Alide_3008 659d7e32d1f9e186b5c8f707f3f68b89 236 Pfam PF00072 Response regulator receiver domain 12 121 5.7E-26 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3008 659d7e32d1f9e186b5c8f707f3f68b89 236 Gene3D G3DSA:1.10.10.10 130 236 5.0E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3008 659d7e32d1f9e186b5c8f707f3f68b89 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 230 5.6E-21 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3008 659d7e32d1f9e186b5c8f707f3f68b89 236 SUPERFAMILY SSF52172 10 189 2.99E-37 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3008 659d7e32d1f9e186b5c8f707f3f68b89 236 SMART SM00862 155 231 1.3E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3008 659d7e32d1f9e186b5c8f707f3f68b89 236 SMART SM00448 10 120 1.0E-34 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2497 9929280811a7955f2c060c97481efc6c 298 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_2497 9929280811a7955f2c060c97481efc6c 298 Pfam PF00809 Pterin binding enzyme 18 257 3.9E-75 T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_2497 9929280811a7955f2c060c97481efc6c 298 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 12-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_2497 9929280811a7955f2c060c97481efc6c 298 SUPERFAMILY SSF51717 2 275 1.07E-97 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_2497 9929280811a7955f2c060c97481efc6c 298 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 271 5.8E-92 T 12-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 Alide_2497 9929280811a7955f2c060c97481efc6c 298 Gene3D G3DSA:3.20.20.20 1 280 9.6E-103 T 12-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Alide_3227 0809dcf1a10dd02543f367e93114e284 422 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 420 36.133 T 12-10-2018 IPR006698 Uncharacterised protein family UPF0229 Alide_3227 0809dcf1a10dd02543f367e93114e284 422 Pfam PF04285 Protein of unknown function (DUF444) 4 418 1.1E-170 T 12-10-2018 IPR006698 Uncharacterised protein family UPF0229 Alide_1984 7d5a803dcaae887387c49bc364ec786a 337 Gene3D G3DSA:3.90.550.10 2 235 3.6E-40 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_1984 7d5a803dcaae887387c49bc364ec786a 337 Pfam PF00535 Glycosyl transferase family 2 15 178 4.5E-36 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Alide_1984 7d5a803dcaae887387c49bc364ec786a 337 SUPERFAMILY SSF53448 11 230 9.64E-41 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_2289 b5216b56910f3920784510998a8685da 510 Gene3D G3DSA:3.90.226.10 1 256 6.5E-99 T 12-10-2018 Alide_2289 b5216b56910f3920784510998a8685da 510 Gene3D G3DSA:3.90.226.10 257 510 9.4E-94 T 12-10-2018 Alide_2289 b5216b56910f3920784510998a8685da 510 Pfam PF01039 Carboxyl transferase domain 27 508 1.0E-197 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Alide_2289 b5216b56910f3920784510998a8685da 510 SUPERFAMILY SSF52096 3 249 3.37E-81 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2289 b5216b56910f3920784510998a8685da 510 SUPERFAMILY SSF52096 223 510 1.4E-88 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0028 f01eca0512f810639fd180cf28bafe85 254 Pfam PF01614 Bacterial transcriptional regulator 134 242 2.4E-6 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_0028 f01eca0512f810639fd180cf28bafe85 254 Gene3D G3DSA:1.10.10.10 6 79 2.2E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0028 f01eca0512f810639fd180cf28bafe85 254 Gene3D G3DSA:3.30.450.40 82 252 8.1E-29 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0028 f01eca0512f810639fd180cf28bafe85 254 Pfam PF09339 IclR helix-turn-helix domain 12 64 4.6E-15 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0028 f01eca0512f810639fd180cf28bafe85 254 SMART SM00346 10 101 1.8E-21 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0028 f01eca0512f810639fd180cf28bafe85 254 SUPERFAMILY SSF46785 11 85 3.69E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0028 f01eca0512f810639fd180cf28bafe85 254 SUPERFAMILY SSF55781 77 244 2.09E-32 T 12-10-2018 Alide_3300 38bfc19c85705d9d8f476e8caff50328 414 Gene3D G3DSA:3.40.50.10540 11 408 1.0E-146 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3300 38bfc19c85705d9d8f476e8caff50328 414 Gene3D G3DSA:3.30.1540.10 250 341 1.0E-146 T 12-10-2018 Alide_3300 38bfc19c85705d9d8f476e8caff50328 414 SUPERFAMILY SSF89796 6 414 2.22E-140 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_3300 38bfc19c85705d9d8f476e8caff50328 414 Pfam PF02515 CoA-transferase family III 11 390 7.1E-133 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_4295 63760e99848b587dc3adeead74c841f9 414 Pfam PF02515 CoA-transferase family III 5 383 2.7E-129 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_4295 63760e99848b587dc3adeead74c841f9 414 SUPERFAMILY SSF89796 3 407 1.01E-137 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4295 63760e99848b587dc3adeead74c841f9 414 Gene3D G3DSA:3.30.1540.10 243 334 7.2E-136 T 12-10-2018 Alide_4295 63760e99848b587dc3adeead74c841f9 414 Gene3D G3DSA:3.40.50.10540 4 401 7.2E-136 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_1680 98373bd4ec12c18c9b92dbd489da4fc3 429 Pfam PF13252 Protein of unknown function (DUF4043) 56 420 2.1E-125 T 12-10-2018 IPR025267 Protein of unknown function DUF4043 Alide_3853 07e86c9cd9a8178c82636fa0c05ec811 154 Pfam PF02050 Flagellar FliJ protein 19 141 2.7E-23 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Alide_3853 07e86c9cd9a8178c82636fa0c05ec811 154 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 11 144 2.0E-18 T 12-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Alide_1111 943f53a87c61e3f2b0e0ffd71405ea2d 299 Gene3D G3DSA:3.40.250.10 1 167 1.0E-40 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_1111 943f53a87c61e3f2b0e0ffd71405ea2d 299 SUPERFAMILY SSF52821 177 299 1.44E-29 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_1111 943f53a87c61e3f2b0e0ffd71405ea2d 299 SUPERFAMILY SSF52821 2 157 1.44E-31 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_1111 943f53a87c61e3f2b0e0ffd71405ea2d 299 Pfam PF00581 Rhodanese-like domain 9 147 1.9E-13 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_1111 943f53a87c61e3f2b0e0ffd71405ea2d 299 Pfam PF00581 Rhodanese-like domain 177 290 4.0E-5 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_1111 943f53a87c61e3f2b0e0ffd71405ea2d 299 Gene3D G3DSA:3.40.250.10 179 299 6.4E-28 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_1111 943f53a87c61e3f2b0e0ffd71405ea2d 299 SMART SM00450 174 294 4.1E-5 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_1111 943f53a87c61e3f2b0e0ffd71405ea2d 299 SMART SM00450 8 150 3.3E-13 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 PRINTS PR00301 70kDa heat shock protein signature 166 186 2.2E-7 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 PRINTS PR00301 70kDa heat shock protein signature 11 24 2.2E-7 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 PRINTS PR00301 70kDa heat shock protein signature 233 243 2.2E-7 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 SUPERFAMILY SSF53067 222 447 2.42E-25 T 12-10-2018 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 Gene3D G3DSA:3.30.420.40 13 444 7.0E-38 T 12-10-2018 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 Gene3D G3DSA:3.30.420.40 218 433 7.0E-38 T 12-10-2018 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 SUPERFAMILY SSF53067 12 208 6.8E-27 T 12-10-2018 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 Pfam PF12531 DNA-K related protein 689 932 3.2E-92 T 12-10-2018 IPR021030 Protein of unknown function DUF3731 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 Pfam PF00012 Hsp70 protein 136 309 8.8E-15 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 Gene3D G3DSA:3.90.640.10 264 352 7.0E-38 T 12-10-2018 Alide_0581 46586d3f9924af09b5bf721d23e3bfa2 934 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 227 240 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_1601 d219dc9653148ec403c5e1519788644c 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 4.6E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1601 d219dc9653148ec403c5e1519788644c 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 4.6E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1601 d219dc9653148ec403c5e1519788644c 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 4.6E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1601 d219dc9653148ec403c5e1519788644c 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 4.6E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1601 d219dc9653148ec403c5e1519788644c 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 4.6E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1601 d219dc9653148ec403c5e1519788644c 266 Gene3D G3DSA:3.40.50.720 1 263 2.2E-79 T 12-10-2018 Alide_1601 d219dc9653148ec403c5e1519788644c 266 SUPERFAMILY SSF51735 1 262 3.56E-74 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1601 d219dc9653148ec403c5e1519788644c 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 261 1.3E-61 T 12-10-2018 Alide_1601 d219dc9653148ec403c5e1519788644c 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.9E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1601 d219dc9653148ec403c5e1519788644c 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.9E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1601 d219dc9653148ec403c5e1519788644c 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 1.9E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3971 03678b5a352be8d8ecc4345d8f282f2f 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 43.613 T 12-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_3971 03678b5a352be8d8ecc4345d8f282f2f 179 PIRSF PIRSF002161 1 179 3.8E-63 T 12-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3971 03678b5a352be8d8ecc4345d8f282f2f 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 12-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3971 03678b5a352be8d8ecc4345d8f282f2f 179 SUPERFAMILY SSF55282 3 179 2.19E-76 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3971 03678b5a352be8d8ecc4345d8f282f2f 179 Pfam PF00673 ribosomal L5P family C-terminus 85 177 1.4E-39 T 12-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3971 03678b5a352be8d8ecc4345d8f282f2f 179 Gene3D G3DSA:3.30.1440.10 1 179 1.2E-78 T 12-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3971 03678b5a352be8d8ecc4345d8f282f2f 179 Pfam PF00281 Ribosomal protein L5 24 80 1.4E-27 T 12-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_2442 d631aebcb465928737d21f8373cdaf9c 1148 SUPERFAMILY SSF53323 719 959 6.28E-32 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Alide_2442 d631aebcb465928737d21f8373cdaf9c 1148 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 468 551 2.1E-5 T 12-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Alide_2442 d631aebcb465928737d21f8373cdaf9c 1148 SUPERFAMILY SSF52518 27 206 1.35E-14 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2442 d631aebcb465928737d21f8373cdaf9c 1148 SUPERFAMILY SSF52518 429 612 1.31E-13 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2442 d631aebcb465928737d21f8373cdaf9c 1148 Gene3D G3DSA:3.40.920.10 716 920 2.0E-19 T 12-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Alide_2442 d631aebcb465928737d21f8373cdaf9c 1148 Gene3D G3DSA:3.40.50.970 16 226 9.1E-24 T 12-10-2018 Alide_2442 d631aebcb465928737d21f8373cdaf9c 1148 SUPERFAMILY SSF52922 280 397 6.8E-7 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2442 d631aebcb465928737d21f8373cdaf9c 1148 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 728 915 5.9E-26 T 12-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Alide_2772 9ff6030e03635371844ca80bcdf5ccbc 260 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2772 9ff6030e03635371844ca80bcdf5ccbc 260 PIRSF PIRSF039085 10 258 8.8E-110 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Alide_2772 9ff6030e03635371844ca80bcdf5ccbc 260 Gene3D G3DSA:3.40.50.300 10 259 9.3E-77 T 12-10-2018 Alide_2772 9ff6030e03635371844ca80bcdf5ccbc 260 SMART SM00382 38 230 1.5E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2772 9ff6030e03635371844ca80bcdf5ccbc 260 Pfam PF00005 ABC transporter 29 182 1.4E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2772 9ff6030e03635371844ca80bcdf5ccbc 260 SUPERFAMILY SSF52540 13 252 5.44E-75 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2905 c8d7f6567f1565029de33de36d0f5345 254 Pfam PF00005 ABC transporter 18 177 2.6E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2905 c8d7f6567f1565029de33de36d0f5345 254 SMART SM00382 26 226 1.3E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2905 c8d7f6567f1565029de33de36d0f5345 254 Gene3D G3DSA:3.40.50.300 1 249 9.4E-62 T 12-10-2018 Alide_2905 c8d7f6567f1565029de33de36d0f5345 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 248 2.1E-13 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_2905 c8d7f6567f1565029de33de36d0f5345 254 SUPERFAMILY SSF52540 2 249 5.55E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0386 dd0127f8885258d03ce1175c5d2d87fd 226 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 71 218 4.6E-10 T 12-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component Alide_0386 dd0127f8885258d03ce1175c5d2d87fd 226 SUPERFAMILY SSF159594 42 224 1.07E-27 T 12-10-2018 Alide_0386 dd0127f8885258d03ce1175c5d2d87fd 226 Gene3D G3DSA:3.40.50.10610 52 226 4.8E-18 T 12-10-2018 Alide_2984 0c5808a589119c9aab651ba32801e3b2 294 Gene3D G3DSA:3.20.20.60 1 294 2.7E-79 T 12-10-2018 Alide_2984 0c5808a589119c9aab651ba32801e3b2 294 SUPERFAMILY SSF51621 5 241 2.97E-51 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_2984 0c5808a589119c9aab651ba32801e3b2 294 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 9 230 2.8E-33 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Alide_2984 0c5808a589119c9aab651ba32801e3b2 294 PIRSF PIRSF015582 1 294 2.8E-80 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like Alide_4618 d45d1f6e4a454867a19725abc73a6b9f 123 SUPERFAMILY SSF51182 8 111 3.73E-17 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_4618 d45d1f6e4a454867a19725abc73a6b9f 123 Pfam PF07883 Cupin domain 41 110 4.0E-11 T 12-10-2018 IPR013096 Cupin 2, conserved barrel Alide_4618 d45d1f6e4a454867a19725abc73a6b9f 123 Gene3D G3DSA:2.60.120.10 1 123 4.2E-34 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_0572 ef3e41da123b0a914a205c5c951e45f1 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 1.5E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0572 ef3e41da123b0a914a205c5c951e45f1 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 9.0E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0572 ef3e41da123b0a914a205c5c951e45f1 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 9.0E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0572 ef3e41da123b0a914a205c5c951e45f1 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 9.0E-6 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0572 ef3e41da123b0a914a205c5c951e45f1 315 Gene3D G3DSA:3.40.190.290 101 304 7.8E-37 T 12-10-2018 Alide_0572 ef3e41da123b0a914a205c5c951e45f1 315 SUPERFAMILY SSF46785 12 121 6.53E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0572 ef3e41da123b0a914a205c5c951e45f1 315 SUPERFAMILY SSF53850 101 304 5.61E-36 T 12-10-2018 Alide_0572 ef3e41da123b0a914a205c5c951e45f1 315 Gene3D G3DSA:1.10.10.10 12 100 6.8E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0572 ef3e41da123b0a914a205c5c951e45f1 315 Pfam PF03466 LysR substrate binding domain 101 303 5.3E-33 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2184 5ea42d47c55ad809d8716966cb6a2f54 325 SUPERFAMILY SSF53850 115 281 2.49E-13 T 12-10-2018 Alide_2184 5ea42d47c55ad809d8716966cb6a2f54 325 Gene3D G3DSA:3.40.190.150 29 315 6.7E-112 T 12-10-2018 Alide_2184 5ea42d47c55ad809d8716966cb6a2f54 325 PIRSF PIRSF017082 1 325 2.6E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2184 5ea42d47c55ad809d8716966cb6a2f54 325 Gene3D G3DSA:3.40.190.10 127 250 6.7E-112 T 12-10-2018 Alide_2184 5ea42d47c55ad809d8716966cb6a2f54 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 320 2.4E-86 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3332 1fe2755cbcdba9c36658526b07add1b5 517 Gene3D G3DSA:3.40.50.12780 12 411 1.7E-127 T 12-10-2018 Alide_3332 1fe2755cbcdba9c36658526b07add1b5 517 SUPERFAMILY SSF56801 7 515 1.83E-147 T 12-10-2018 Alide_3332 1fe2755cbcdba9c36658526b07add1b5 517 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_3332 1fe2755cbcdba9c36658526b07add1b5 517 Gene3D G3DSA:3.30.300.310 414 516 1.0E-28 T 12-10-2018 Alide_3332 1fe2755cbcdba9c36658526b07add1b5 517 Pfam PF00501 AMP-binding enzyme 29 418 6.8E-97 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_3332 1fe2755cbcdba9c36658526b07add1b5 517 Pfam PF13193 AMP-binding enzyme C-terminal domain 427 502 9.3E-14 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1844 957c31fe04f8866245b3041d8d309856 291 Pfam PF02666 Phosphatidylserine decarboxylase 63 278 3.6E-59 T 12-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Alide_1844 957c31fe04f8866245b3041d8d309856 291 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 281 45.768 T 12-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 Alide_1844 957c31fe04f8866245b3041d8d309856 291 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 278 4.4E-76 T 12-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Alide_1374 d7f7787f18bc8679626fead86f33bb29 435 Gene3D G3DSA:2.60.40.2240 1 128 1.4E-28 T 12-10-2018 Alide_1374 d7f7787f18bc8679626fead86f33bb29 435 Pfam PF08840 BAAT / Acyl-CoA thioester hydrolase C terminal 198 427 1.4E-55 T 12-10-2018 IPR014940 BAAT/Acyl-CoA thioester hydrolase C-terminal Alide_1374 d7f7787f18bc8679626fead86f33bb29 435 Pfam PF04775 Acyl-CoA thioester hydrolase/BAAT N-terminal region 16 135 1.1E-31 T 12-10-2018 IPR006862 Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase Alide_1374 d7f7787f18bc8679626fead86f33bb29 435 Gene3D G3DSA:3.40.50.1820 129 426 3.1E-62 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1374 d7f7787f18bc8679626fead86f33bb29 435 SUPERFAMILY SSF53474 64 424 7.66E-28 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1374 d7f7787f18bc8679626fead86f33bb29 435 PIRSF PIRSF016521 1 434 1.0E-104 T 12-10-2018 IPR016662 Acyl-CoA thioesterase, long chain GO:0006637|GO:0016790 Alide_2980 77e12a7b6c4ee3408106b60ab656ed04 386 SUPERFAMILY SSF89796 7 362 1.83E-107 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2980 77e12a7b6c4ee3408106b60ab656ed04 386 Gene3D G3DSA:3.40.50.10540 8 330 6.2E-111 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2980 77e12a7b6c4ee3408106b60ab656ed04 386 Gene3D G3DSA:3.30.1540.10 223 312 6.2E-111 T 12-10-2018 Alide_2980 77e12a7b6c4ee3408106b60ab656ed04 386 Pfam PF02515 CoA-transferase family III 9 358 1.2E-80 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_3908 48f3b87ae1e99aa2de91df7d4e94d56d 177 Gene3D G3DSA:3.40.30.10 1 177 1.8E-39 T 12-10-2018 Alide_3908 48f3b87ae1e99aa2de91df7d4e94d56d 177 Pfam PF00578 AhpC/TSA family 1 127 4.4E-16 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Alide_3908 48f3b87ae1e99aa2de91df7d4e94d56d 177 SUPERFAMILY SSF52833 1 177 3.95E-32 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2470 9104d48e5e9ada7da0e6c61990295b5b 344 Gene3D G3DSA:1.20.58.2180 160 336 1.5E-43 T 12-10-2018 Alide_2470 9104d48e5e9ada7da0e6c61990295b5b 344 Gene3D G3DSA:3.40.50.1980 30 154 9.0E-19 T 12-10-2018 Alide_2470 9104d48e5e9ada7da0e6c61990295b5b 344 Gene3D G3DSA:3.40.50.1980 184 285 1.5E-43 T 12-10-2018 Alide_2470 9104d48e5e9ada7da0e6c61990295b5b 344 Pfam PF01497 Periplasmic binding protein 90 277 6.1E-17 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain Alide_2470 9104d48e5e9ada7da0e6c61990295b5b 344 SUPERFAMILY SSF53807 40 305 4.71E-37 T 12-10-2018 Alide_2886 76ab526f38a3f908c21d4f4f7aa42e3c 319 Gene3D G3DSA:3.20.20.70 1 312 9.5E-98 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2886 76ab526f38a3f908c21d4f4f7aa42e3c 319 SUPERFAMILY SSF51569 6 310 1.32E-60 T 12-10-2018 Alide_2886 76ab526f38a3f908c21d4f4f7aa42e3c 319 Pfam PF00682 HMGL-like 7 292 7.8E-35 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Alide_0225 4ab78e5d805abe8db1b28b690e0858bd 117 ProDom PD074011 PRECURSOR SIGNAL RESISTANCE CZCI ZINC COBALT-ZINC-CADMIUM SYSTEM COBALT CATION CADMIUM 1 77 2.0E-15 T 12-10-2018 IPR020487 Cobalt/zinc/cadmium resistance protein CzcI Alide_2032 a49a5b5a51ab33d80c78830fe209772b 149 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 6 147 2.0E-49 T 12-10-2018 Alide_2032 a49a5b5a51ab33d80c78830fe209772b 149 Pfam PF01220 Dehydroquinase class II 6 145 6.8E-58 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Alide_2032 a49a5b5a51ab33d80c78830fe209772b 149 PIRSF PIRSF001399 2 149 7.1E-59 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Alide_2032 a49a5b5a51ab33d80c78830fe209772b 149 Gene3D G3DSA:3.40.50.9100 1 149 1.7E-60 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Alide_2032 a49a5b5a51ab33d80c78830fe209772b 149 ProSitePatterns PS01029 Dehydroquinase class II signature. 9 26 - T 12-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Alide_2032 a49a5b5a51ab33d80c78830fe209772b 149 SUPERFAMILY SSF52304 5 148 2.35E-56 T 12-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Alide_2032 a49a5b5a51ab33d80c78830fe209772b 149 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 149 65.924 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Alide_2032 a49a5b5a51ab33d80c78830fe209772b 149 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 147 4.2E-54 T 12-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Alide_2542 2c8401815da3d41238f5ca7d258f5e10 403 SUPERFAMILY SSF118215 15 396 8.37E-89 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Alide_2542 2c8401815da3d41238f5ca7d258f5e10 403 Pfam PF00375 Sodium:dicarboxylate symporter family 15 394 1.0E-61 T 12-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Alide_2542 2c8401815da3d41238f5ca7d258f5e10 403 PRINTS PR00173 Glutamate-aspartate symporter signature 287 313 6.2E-14 T 12-10-2018 Alide_2542 2c8401815da3d41238f5ca7d258f5e10 403 PRINTS PR00173 Glutamate-aspartate symporter signature 322 341 6.2E-14 T 12-10-2018 Alide_2542 2c8401815da3d41238f5ca7d258f5e10 403 PRINTS PR00173 Glutamate-aspartate symporter signature 13 33 6.2E-14 T 12-10-2018 Alide_2542 2c8401815da3d41238f5ca7d258f5e10 403 PRINTS PR00173 Glutamate-aspartate symporter signature 220 239 6.2E-14 T 12-10-2018 Alide_2542 2c8401815da3d41238f5ca7d258f5e10 403 PRINTS PR00173 Glutamate-aspartate symporter signature 185 204 6.2E-14 T 12-10-2018 Alide_2542 2c8401815da3d41238f5ca7d258f5e10 403 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 3 403 34.754 T 12-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 Alide_2542 2c8401815da3d41238f5ca7d258f5e10 403 Gene3D G3DSA:1.10.3860.10 5 400 1.5E-70 T 12-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Alide_0213 3847ce6dd01fab0457386996b43d97ba 241 TIGRFAM TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ 7 238 2.3E-66 T 12-10-2018 IPR014147 Type IV conjugative transfer protein TrbJ Alide_0213 3847ce6dd01fab0457386996b43d97ba 241 Pfam PF13605 Domain of unknown function (DUF4141) 5 35 1.2E-9 T 12-10-2018 IPR025415 Protein of unknown function DUF4141 Alide_3941 13eee86dd58015190ac716121a5b1e4a 326 Gene3D G3DSA:3.40.190.10 129 250 1.1E-106 T 12-10-2018 Alide_3941 13eee86dd58015190ac716121a5b1e4a 326 SUPERFAMILY SSF53850 116 281 6.81E-14 T 12-10-2018 Alide_3941 13eee86dd58015190ac716121a5b1e4a 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 311 1.1E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3941 13eee86dd58015190ac716121a5b1e4a 326 PIRSF PIRSF017082 1 324 1.2E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3941 13eee86dd58015190ac716121a5b1e4a 326 Gene3D G3DSA:3.40.190.150 31 311 1.1E-106 T 12-10-2018 Alide_3800 91e2e7ce3c073d85164b5755b1db5437 534 SUPERFAMILY SSF52096 22 269 1.24E-69 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3800 91e2e7ce3c073d85164b5755b1db5437 534 Gene3D G3DSA:3.90.226.10 1 270 3.4E-96 T 12-10-2018 Alide_3800 91e2e7ce3c073d85164b5755b1db5437 534 SUPERFAMILY SSF52096 236 516 8.58E-88 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3800 91e2e7ce3c073d85164b5755b1db5437 534 Gene3D G3DSA:3.90.226.10 271 534 8.7E-105 T 12-10-2018 Alide_3800 91e2e7ce3c073d85164b5755b1db5437 534 Pfam PF01039 Carboxyl transferase domain 47 524 4.5E-151 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 SUPERFAMILY SSF54534 83 157 4.84E-24 T 12-10-2018 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 32.766 T 12-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 3.2E-29 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 PIRSF PIRSF006092 1 158 1.9E-52 T 12-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 Gene3D G3DSA:3.10.50.30 78 158 3.2E-29 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 Gene3D G3DSA:1.10.287.180 1 75 2.0E-30 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 3.0E-56 T 12-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 SUPERFAMILY SSF46557 3 78 1.24E-27 T 12-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 2.4E-31 T 12-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Alide_2503 923c92ebbd43ec9726800a4cf09fb891 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 12-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Alide_4428 93e9bd9ceacc8ed4d43e47a244289bac 637 Gene3D G3DSA:3.40.50.300 355 603 3.3E-43 T 12-10-2018 Alide_4428 93e9bd9ceacc8ed4d43e47a244289bac 637 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 121 620 2.7E-162 T 12-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 Alide_4428 93e9bd9ceacc8ed4d43e47a244289bac 637 SUPERFAMILY SSF52540 145 610 2.92E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 SUPERFAMILY SSF56645 13 246 9.69E-67 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 123 2.1E-25 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 Gene3D G3DSA:1.10.540.10 9 124 1.4E-28 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 384 1.5E-51 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 SUPERFAMILY SSF47203 235 386 8.86E-57 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 222 6.0E-22 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 Gene3D G3DSA:1.20.140.10 242 388 1.5E-54 T 12-10-2018 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 PIRSF PIRSF016578 243 389 3.6E-12 T 12-10-2018 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 PIRSF PIRSF016578 2 118 7.8E-5 T 12-10-2018 Alide_3395 a27ad0b96494d5f703d55e0dd0419604 390 Gene3D G3DSA:2.40.110.10 126 241 1.5E-36 T 12-10-2018 Alide_0554 c47001018c51e674f390b8462d34201b 347 Pfam PF01636 Phosphotransferase enzyme family 41 284 2.0E-39 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase Alide_0554 c47001018c51e674f390b8462d34201b 347 Gene3D G3DSA:3.30.200.70 19 114 2.1E-116 T 12-10-2018 Alide_0554 c47001018c51e674f390b8462d34201b 347 Hamap MF_01497 Stress response kinase A [srkA]. 10 341 46.908 T 12-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 Alide_0554 c47001018c51e674f390b8462d34201b 347 SUPERFAMILY SSF56112 12 345 2.48E-89 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_0554 c47001018c51e674f390b8462d34201b 347 Gene3D G3DSA:1.20.1270.170 155 330 2.1E-116 T 12-10-2018 Alide_0554 c47001018c51e674f390b8462d34201b 347 Gene3D G3DSA:1.10.510.10 66 281 2.1E-116 T 12-10-2018 Alide_1795 3cbf7dcbbf7f5a5e6b2a32d1f8fc63cd 595 SUPERFAMILY SSF56014 152 310 5.23E-41 T 12-10-2018 Alide_1795 3cbf7dcbbf7f5a5e6b2a32d1f8fc63cd 595 Gene3D G3DSA:3.30.413.10 438 578 3.1E-27 T 12-10-2018 Alide_1795 3cbf7dcbbf7f5a5e6b2a32d1f8fc63cd 595 SUPERFAMILY SSF56014 437 589 2.36E-35 T 12-10-2018 Alide_1795 3cbf7dcbbf7f5a5e6b2a32d1f8fc63cd 595 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 378 428 1.3E-12 T 12-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_1795 3cbf7dcbbf7f5a5e6b2a32d1f8fc63cd 595 SUPERFAMILY SSF55124 19 145 2.32E-12 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_1795 3cbf7dcbbf7f5a5e6b2a32d1f8fc63cd 595 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 151 301 2.2E-34 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_1795 3cbf7dcbbf7f5a5e6b2a32d1f8fc63cd 595 SUPERFAMILY SSF55124 345 451 1.39E-17 T 12-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_1795 3cbf7dcbbf7f5a5e6b2a32d1f8fc63cd 595 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 485 581 2.4E-9 T 12-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Alide_2420 bed37f414b65b51ef5efc0a510195735 426 Gene3D G3DSA:3.40.640.10 51 316 4.9E-146 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2420 bed37f414b65b51ef5efc0a510195735 426 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 237 256 - T 12-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Alide_2420 bed37f414b65b51ef5efc0a510195735 426 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 22 426 1.6E-147 T 12-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Alide_2420 bed37f414b65b51ef5efc0a510195735 426 PIRSF PIRSF005572 37 426 7.3E-48 T 12-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Alide_2420 bed37f414b65b51ef5efc0a510195735 426 Gene3D G3DSA:3.90.1150.10 24 417 4.9E-146 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2420 bed37f414b65b51ef5efc0a510195735 426 SUPERFAMILY SSF53383 19 423 9.58E-115 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2420 bed37f414b65b51ef5efc0a510195735 426 Pfam PF00266 Aminotransferase class-V 41 414 1.7E-126 T 12-10-2018 IPR000192 Aminotransferase class V domain Alide_3612 3aa12043410ace4936f5738ef777f3be 527 Pfam PF12838 4Fe-4S dicluster domain 314 364 5.4E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3612 3aa12043410ace4936f5738ef777f3be 527 Pfam PF02662 Methyl-viologen-reducing hydrogenase, delta subunit 414 512 1.8E-12 T 12-10-2018 IPR003813 F420-non-reducing hydrogenase iron-sulfur subunit D GO:0055114 Alide_3612 3aa12043410ace4936f5738ef777f3be 527 SUPERFAMILY SSF54862 300 364 3.84E-14 T 12-10-2018 Alide_3612 3aa12043410ace4936f5738ef777f3be 527 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 352 363 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_3612 3aa12043410ace4936f5738ef777f3be 527 Gene3D G3DSA:3.30.70.20 302 374 7.3E-11 T 12-10-2018 Alide_3612 3aa12043410ace4936f5738ef777f3be 527 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 315 326 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_3612 3aa12043410ace4936f5738ef777f3be 527 Pfam PF00033 Cytochrome b/b6/petB 47 215 9.7E-16 T 12-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 Alide_3612 3aa12043410ace4936f5738ef777f3be 527 SUPERFAMILY SSF81342 30 222 1.21E-28 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_3612 3aa12043410ace4936f5738ef777f3be 527 Gene3D G3DSA:1.20.810.10 22 226 1.7E-35 T 12-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 Alide_3864 7b3360fbff644e425acd22de80ee1cdf 1669 SUPERFAMILY SSF53448 889 1004 5.72E-5 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3864 7b3360fbff644e425acd22de80ee1cdf 1669 Gene3D G3DSA:3.40.50.2000 1495 1639 4.5E-8 T 12-10-2018 Alide_3864 7b3360fbff644e425acd22de80ee1cdf 1669 Gene3D G3DSA:3.20.20.80 438 789 3.1E-13 T 12-10-2018 Alide_3864 7b3360fbff644e425acd22de80ee1cdf 1669 SUPERFAMILY SSF53448 1051 1278 2.34E-45 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3864 7b3360fbff644e425acd22de80ee1cdf 1669 Pfam PF00535 Glycosyl transferase family 2 1055 1236 1.0E-20 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Alide_3864 7b3360fbff644e425acd22de80ee1cdf 1669 Pfam PF05159 Capsule polysaccharide biosynthesis protein 211 326 3.5E-10 T 12-10-2018 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 Alide_3864 7b3360fbff644e425acd22de80ee1cdf 1669 Gene3D G3DSA:3.90.550.10 1045 1288 2.1E-44 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3864 7b3360fbff644e425acd22de80ee1cdf 1669 SUPERFAMILY SSF53756 1320 1650 1.7E-7 T 12-10-2018 Alide_3864 7b3360fbff644e425acd22de80ee1cdf 1669 Pfam PF14307 Glycosyltransferase WbsX 441 779 1.2E-131 T 12-10-2018 IPR032719 Glycosyltransferase WbsX Alide_2936 2c0e42e9a5d8e10cbfe5081bb6093790 401 PIRSF PIRSF000429 1 401 2.3E-135 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2936 2c0e42e9a5d8e10cbfe5081bb6093790 401 SUPERFAMILY SSF53901 4 274 1.08E-74 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2936 2c0e42e9a5d8e10cbfe5081bb6093790 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 3.8E-132 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2936 2c0e42e9a5d8e10cbfe5081bb6093790 401 SUPERFAMILY SSF53901 275 400 6.01E-42 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2936 2c0e42e9a5d8e10cbfe5081bb6093790 401 Pfam PF00108 Thiolase, N-terminal domain 5 267 1.0E-69 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_2936 2c0e42e9a5d8e10cbfe5081bb6093790 401 Pfam PF02803 Thiolase, C-terminal domain 275 400 1.0E-43 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_2936 2c0e42e9a5d8e10cbfe5081bb6093790 401 Gene3D G3DSA:3.40.47.10 6 280 1.1E-141 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2936 2c0e42e9a5d8e10cbfe5081bb6093790 401 Gene3D G3DSA:3.40.47.10 126 398 1.1E-141 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 Gene3D G3DSA:2.40.110.10 120 229 3.3E-131 T 12-10-2018 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 117 6.8E-27 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 SUPERFAMILY SSF47203 228 380 1.61E-54 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 3.8E-48 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 Gene3D G3DSA:1.20.140.10 230 375 3.3E-131 T 12-10-2018 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 PIRSF PIRSF016578 4 376 5.9E-22 T 12-10-2018 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 217 1.8E-29 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 SUPERFAMILY SSF56645 9 242 1.07E-77 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0183 c7bd403a973d8ae7c6b677a91d536b92 385 Gene3D G3DSA:1.10.540.10 6 119 3.3E-131 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0873 73f449152a05bc348c0a76c150872af4 216 Pfam PF01634 ATP phosphoribosyltransferase 54 208 3.9E-48 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Alide_0873 73f449152a05bc348c0a76c150872af4 216 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 149 170 - T 12-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 Alide_0873 73f449152a05bc348c0a76c150872af4 216 Gene3D G3DSA:3.40.190.10 96 182 1.7E-69 T 12-10-2018 Alide_0873 73f449152a05bc348c0a76c150872af4 216 Gene3D G3DSA:3.40.190.10 6 203 1.7E-69 T 12-10-2018 Alide_0873 73f449152a05bc348c0a76c150872af4 216 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 4 214 54.849 T 12-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 Alide_0873 73f449152a05bc348c0a76c150872af4 216 SUPERFAMILY SSF53850 5 209 2.61E-64 T 12-10-2018 Alide_0873 73f449152a05bc348c0a76c150872af4 216 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 5 190 3.7E-58 T 12-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 29 272 2.8E-63 T 12-10-2018 Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 SUPERFAMILY SSF51735 13 273 2.32E-78 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 191 1.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 98 109 1.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 1.1E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 Gene3D G3DSA:3.40.50.720 5 276 6.5E-87 T 12-10-2018 Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 235 255 4.8E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 98 109 4.8E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 161 4.8E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 24 41 4.8E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 191 4.8E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4175 65952aefa951fd2d5e315223ad6b6ed9 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 210 4.8E-33 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2038 fef78ea09441253f357d3d9644745001 156 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 1.1E-23 T 12-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Alide_2038 fef78ea09441253f357d3d9644745001 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 1.1E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_2038 fef78ea09441253f357d3d9644745001 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 1.1E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_2038 fef78ea09441253f357d3d9644745001 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 1.1E-12 T 12-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Alide_2038 fef78ea09441253f357d3d9644745001 156 Gene3D G3DSA:1.10.10.10 4 55 2.5E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2038 fef78ea09441253f357d3d9644745001 156 SUPERFAMILY SSF46785 2 62 1.54E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2038 fef78ea09441253f357d3d9644745001 156 SMART SM00344 3 112 1.4E-46 T 12-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Alide_2038 fef78ea09441253f357d3d9644745001 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 2.4E-18 T 12-10-2018 Alide_2038 fef78ea09441253f357d3d9644745001 156 SUPERFAMILY SSF54909 63 152 2.41E-21 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_2038 fef78ea09441253f357d3d9644745001 156 Gene3D G3DSA:3.30.70.920 57 140 1.4E-27 T 12-10-2018 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 PIRSF PIRSF016578 96 380 2.1E-15 T 12-10-2018 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 PIRSF PIRSF016578 5 89 4.7E-5 T 12-10-2018 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 Gene3D G3DSA:1.10.540.10 4 119 7.5E-27 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 SUPERFAMILY SSF56645 9 242 1.19E-75 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 217 2.2E-28 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 SUPERFAMILY SSF47203 228 381 1.05E-56 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 Gene3D G3DSA:1.20.140.10 236 381 1.5E-55 T 12-10-2018 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 117 2.4E-24 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 379 2.9E-49 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2939 7b7febbf354e537d071a472cebd92de9 383 Gene3D G3DSA:2.40.110.10 120 235 3.0E-43 T 12-10-2018 Alide_2659 7d95c1db69b3dc8ce9e57556b0c27f0a 341 Gene3D G3DSA:3.40.50.2300 76 321 5.6E-62 T 12-10-2018 Alide_2659 7d95c1db69b3dc8ce9e57556b0c27f0a 341 SUPERFAMILY SSF47413 13 71 4.38E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_2659 7d95c1db69b3dc8ce9e57556b0c27f0a 341 Pfam PF13377 Periplasmic binding protein-like domain 180 341 9.6E-31 T 12-10-2018 Alide_2659 7d95c1db69b3dc8ce9e57556b0c27f0a 341 SMART SM00354 13 83 3.2E-20 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Alide_2659 7d95c1db69b3dc8ce9e57556b0c27f0a 341 SUPERFAMILY SSF53822 70 327 1.5E-48 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2659 7d95c1db69b3dc8ce9e57556b0c27f0a 341 Gene3D G3DSA:3.40.50.2300 170 302 5.6E-62 T 12-10-2018 Alide_2659 7d95c1db69b3dc8ce9e57556b0c27f0a 341 Gene3D G3DSA:1.10.260.40 5 70 2.2E-20 T 12-10-2018 Alide_2659 7d95c1db69b3dc8ce9e57556b0c27f0a 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 15 60 2.2E-13 T 12-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Alide_4113 c92ffd296f11a2b463bc07e318f93224 508 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 263 270 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_4113 c92ffd296f11a2b463bc07e318f93224 508 Gene3D G3DSA:3.40.309.10 268 466 1.4E-162 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_4113 c92ffd296f11a2b463bc07e318f93224 508 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_4113 c92ffd296f11a2b463bc07e318f93224 508 Pfam PF00171 Aldehyde dehydrogenase family 29 495 2.2E-163 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_4113 c92ffd296f11a2b463bc07e318f93224 508 SUPERFAMILY SSF53720 11 500 1.1E-161 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_4113 c92ffd296f11a2b463bc07e318f93224 508 Gene3D G3DSA:3.40.605.10 25 494 1.4E-162 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_1820 9dc2acff70b6bb58d8d694ce79e935e5 239 Gene3D G3DSA:3.30.160.390 2 103 4.7E-14 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Alide_1820 9dc2acff70b6bb58d8d694ce79e935e5 239 SUPERFAMILY SSF56349 99 225 1.88E-15 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_1820 9dc2acff70b6bb58d8d694ce79e935e5 239 Gene3D G3DSA:1.10.150.130 104 183 2.5E-30 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_1820 9dc2acff70b6bb58d8d694ce79e935e5 239 Pfam PF13356 Arm DNA-binding domain 4 90 9.1E-11 T 12-10-2018 IPR025166 Integrase, DNA-binding domain Alide_3796 827fbe9b8d8c122a1e7f267238370d74 306 Gene3D G3DSA:3.40.50.720 15 306 5.7E-104 T 12-10-2018 Alide_3796 827fbe9b8d8c122a1e7f267238370d74 306 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 100 270 2.5E-40 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Alide_3796 827fbe9b8d8c122a1e7f267238370d74 306 SUPERFAMILY SSF51735 92 271 1.42E-43 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3796 827fbe9b8d8c122a1e7f267238370d74 306 Gene3D G3DSA:3.40.50.720 90 272 5.7E-104 T 12-10-2018 Alide_4439 acb699cdb59796ba60072312a9e1358f 100 Pfam PF16509 TrfB plasmid transcriptional repressor 5 87 2.1E-34 T 12-10-2018 IPR032428 TrfB transcriptional repressor protein Alide_4439 acb699cdb59796ba60072312a9e1358f 100 Gene3D G3DSA:1.10.10.2690 1 100 1.4E-38 T 12-10-2018 Alide_3294 e277177067075c00bc84c67276be7460 381 SUPERFAMILY SSF56645 11 222 5.89E-36 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_3294 e277177067075c00bc84c67276be7460 381 Gene3D G3DSA:1.20.140.10 230 378 3.1E-32 T 12-10-2018 Alide_3294 e277177067075c00bc84c67276be7460 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 119 1.9E-14 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3294 e277177067075c00bc84c67276be7460 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 226 372 1.7E-23 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3294 e277177067075c00bc84c67276be7460 381 Gene3D G3DSA:1.10.540.10 5 121 4.8E-22 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3294 e277177067075c00bc84c67276be7460 381 Gene3D G3DSA:2.40.110.10 125 223 3.7E-11 T 12-10-2018 Alide_3294 e277177067075c00bc84c67276be7460 381 SUPERFAMILY SSF47203 226 373 6.28E-33 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3749 f552846675ddfcfd0e9fec642dc5793b 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 256 3.7E-68 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3749 f552846675ddfcfd0e9fec642dc5793b 260 SUPERFAMILY SSF52096 1 257 6.26E-77 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3749 f552846675ddfcfd0e9fec642dc5793b 260 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_3749 f552846675ddfcfd0e9fec642dc5793b 260 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 1 260 41.206 T 12-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 Alide_3749 f552846675ddfcfd0e9fec642dc5793b 260 Gene3D G3DSA:3.90.226.10 1 198 2.8E-67 T 12-10-2018 Alide_3749 f552846675ddfcfd0e9fec642dc5793b 260 Gene3D G3DSA:1.10.12.10 200 250 7.1E-23 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3749 f552846675ddfcfd0e9fec642dc5793b 260 TIGRFAM TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase 3 258 2.5E-161 T 12-10-2018 IPR017623 2-ketocyclohexanecarboxyl-CoA hydrolase Alide_3837 f51a18e6f58014993bd2edca7e9169a7 245 Pfam PF03975 CheD chemotactic sensory transduction 114 213 2.2E-34 T 12-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Alide_3837 f51a18e6f58014993bd2edca7e9169a7 245 Gene3D G3DSA:3.30.1330.200 68 223 3.0E-53 T 12-10-2018 IPR038592 CheD-like superfamily Alide_3837 f51a18e6f58014993bd2edca7e9169a7 245 SUPERFAMILY SSF64438 72 218 3.66E-51 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Alide_3837 f51a18e6f58014993bd2edca7e9169a7 245 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 67 217 29.167 T 12-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Alide_4082 082761810bbcba72ab73fcee85042d12 266 SMART SM00382 48 247 1.8E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4082 082761810bbcba72ab73fcee85042d12 266 SUPERFAMILY SSF52540 24 262 1.93E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4082 082761810bbcba72ab73fcee85042d12 266 Gene3D G3DSA:3.40.50.300 22 266 5.4E-72 T 12-10-2018 Alide_4082 082761810bbcba72ab73fcee85042d12 266 Pfam PF00005 ABC transporter 39 191 6.3E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4082 082761810bbcba72ab73fcee85042d12 266 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 240 261 3.0E-7 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_4082 082761810bbcba72ab73fcee85042d12 266 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_4082 082761810bbcba72ab73fcee85042d12 266 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 24 266 3.6E-114 T 12-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 Alide_3397 2ecc323aab8927e43afb597a13b916e7 326 SUPERFAMILY SSF53850 115 280 3.01E-14 T 12-10-2018 Alide_3397 2ecc323aab8927e43afb597a13b916e7 326 Gene3D G3DSA:3.40.190.10 127 250 7.5E-114 T 12-10-2018 Alide_3397 2ecc323aab8927e43afb597a13b916e7 326 Gene3D G3DSA:3.40.190.150 29 315 7.5E-114 T 12-10-2018 Alide_3397 2ecc323aab8927e43afb597a13b916e7 326 PIRSF PIRSF017082 1 324 2.2E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3397 2ecc323aab8927e43afb597a13b916e7 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 315 1.3E-90 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2785 40616d408f5a80a0f75f27ecd0c77ae4 403 SUPERFAMILY SSF89796 9 398 1.57E-131 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2785 40616d408f5a80a0f75f27ecd0c77ae4 403 Gene3D G3DSA:3.40.50.10540 10 348 1.8E-130 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2785 40616d408f5a80a0f75f27ecd0c77ae4 403 Gene3D G3DSA:3.30.1540.10 230 321 1.8E-130 T 12-10-2018 Alide_2785 40616d408f5a80a0f75f27ecd0c77ae4 403 Pfam PF02515 CoA-transferase family III 11 376 6.9E-125 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0692 a7b2693db0363c53c1c11965bae46017 193 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 41 170 4.7E-27 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Alide_0575 cf9830dcf80ab2a67d718e103f58a67c 328 Pfam PF00107 Zinc-binding dehydrogenase 160 285 2.1E-13 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_0575 cf9830dcf80ab2a67d718e103f58a67c 328 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 3 325 1.2E-134 T 12-10-2018 IPR014188 Acrylyl-CoA reductase AcuI Alide_0575 cf9830dcf80ab2a67d718e103f58a67c 328 SUPERFAMILY SSF50129 2 144 5.86E-41 T 12-10-2018 IPR011032 GroES-like superfamily Alide_0575 cf9830dcf80ab2a67d718e103f58a67c 328 Gene3D G3DSA:3.40.50.720 127 294 1.8E-120 T 12-10-2018 Alide_0575 cf9830dcf80ab2a67d718e103f58a67c 328 Gene3D G3DSA:3.90.180.10 19 324 1.8E-120 T 12-10-2018 Alide_0575 cf9830dcf80ab2a67d718e103f58a67c 328 SUPERFAMILY SSF51735 119 293 8.6E-37 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0575 cf9830dcf80ab2a67d718e103f58a67c 328 SMART SM00829 10 324 1.8E-5 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_4186 8f05cf36110954156c62a3aef01be692 158 Gene3D G3DSA:3.20.80.10 5 154 3.3E-42 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Alide_4186 8f05cf36110954156c62a3aef01be692 158 SUPERFAMILY SSF55136 12 153 3.14E-17 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Alide_4186 8f05cf36110954156c62a3aef01be692 158 Pfam PF06445 GyrI-like small molecule binding domain 38 153 4.8E-12 T 12-10-2018 IPR029442 GyrI-like small molecule binding domain Alide_4186 8f05cf36110954156c62a3aef01be692 158 SMART SM00871 3 154 1.9E-12 T 12-10-2018 IPR010499 Bacterial transcription activator, effector binding Alide_4319 ca5f66e45ffadf3827615e0a1ae55392 325 Gene3D G3DSA:3.40.190.150 31 315 3.9E-94 T 12-10-2018 Alide_4319 ca5f66e45ffadf3827615e0a1ae55392 325 Gene3D G3DSA:3.40.190.10 129 250 3.9E-94 T 12-10-2018 Alide_4319 ca5f66e45ffadf3827615e0a1ae55392 325 SUPERFAMILY SSF53850 114 284 3.26E-7 T 12-10-2018 Alide_4319 ca5f66e45ffadf3827615e0a1ae55392 325 PIRSF PIRSF017082 1 325 4.0E-67 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4319 ca5f66e45ffadf3827615e0a1ae55392 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 321 1.2E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0306 f1d9e169e4eeee06dd3a1884683cc704 239 Gene3D G3DSA:2.40.33.20 8 239 1.8E-71 T 12-10-2018 Alide_0306 f1d9e169e4eeee06dd3a1884683cc704 239 SUPERFAMILY SSF50800 8 237 3.66E-66 T 12-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Alide_0306 f1d9e169e4eeee06dd3a1884683cc704 239 Pfam PF03473 MOSC domain 55 173 1.1E-24 T 12-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 Alide_0306 f1d9e169e4eeee06dd3a1884683cc704 239 Pfam PF03475 3-alpha domain 183 224 4.0E-6 T 12-10-2018 IPR005163 3-alpha domain Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 Gene3D G3DSA:1.10.580.10 20 64 2.6E-8 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 SUPERFAMILY SSF48256 12 263 1.14E-52 T 12-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 Pfam PF00285 Citrate synthase, C-terminal domain 18 65 2.2E-6 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 Pfam PF00285 Citrate synthase, C-terminal domain 60 254 8.9E-31 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 Gene3D G3DSA:1.10.580.10 65 252 2.7E-30 T 12-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 PRINTS PR00143 Citrate synthase signature 151 171 5.7E-5 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 PRINTS PR00143 Citrate synthase signature 211 227 5.7E-5 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 PRINTS PR00143 Citrate synthase signature 231 245 5.7E-5 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 PRINTS PR00143 Citrate synthase signature 89 117 5.7E-5 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 PRINTS PR00143 Citrate synthase signature 67 82 5.7E-5 T 12-10-2018 IPR002020 Citrate synthase GO:0046912 Alide_1605 4a49abb05f7996939d725f85d40cbfed 283 Gene3D G3DSA:1.10.230.10 115 225 2.7E-30 T 12-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain Alide_3606 51ac9bebbbabb7f64db320564546a708 299 Pfam PF02628 Cytochrome oxidase assembly protein 57 287 4.1E-23 T 12-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 Alide_3900 e379e79ece46bc7390c14ff22fa014a6 237 SUPERFAMILY SSF53254 15 231 1.23E-38 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_3900 e379e79ece46bc7390c14ff22fa014a6 237 Gene3D G3DSA:3.40.50.1240 14 229 1.7E-31 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_3900 e379e79ece46bc7390c14ff22fa014a6 237 SMART SM00855 17 180 2.2E-9 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_3900 e379e79ece46bc7390c14ff22fa014a6 237 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 18 220 8.8E-20 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_1271 226e997f00c9a5a11a29fdde33332abe 198 Pfam PF04717 Type VI secretion system, phage-baseplate injector 13 125 1.2E-33 T 12-10-2018 IPR006531 Gp5 N-terminal Alide_1271 226e997f00c9a5a11a29fdde33332abe 198 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 16 196 8.8E-35 T 12-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 Alide_1271 226e997f00c9a5a11a29fdde33332abe 198 Gene3D G3DSA:2.40.50.230 9 96 8.6E-31 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Alide_0536 d07570755eb5d555186a12215733b8c2 432 Gene3D G3DSA:3.40.50.150 118 401 1.3E-95 T 12-10-2018 Alide_0536 d07570755eb5d555186a12215733b8c2 432 PIRSF PIRSF003085 5 413 1.9E-125 T 12-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 Alide_0536 d07570755eb5d555186a12215733b8c2 432 SUPERFAMILY SSF53335 119 397 1.13E-72 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0536 d07570755eb5d555186a12215733b8c2 432 Pfam PF02353 Mycolic acid cyclopropane synthetase 110 392 8.7E-93 T 12-10-2018 Alide_1794 cb5443b312484645ef6e65e2a6cae47e 131 Pfam PF06073 Bacterial protein of unknown function (DUF934) 20 126 8.7E-36 T 12-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 Alide_1794 cb5443b312484645ef6e65e2a6cae47e 131 PIRSF PIRSF030820 5 131 1.4E-33 T 12-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 Alide_1492 71f162f95ef0377fcbaf47167e9a305b 353 Pfam PF00248 Aldo/keto reductase family 15 343 9.6E-72 T 12-10-2018 IPR023210 NADP-dependent oxidoreductase domain Alide_1492 71f162f95ef0377fcbaf47167e9a305b 353 SUPERFAMILY SSF51430 1 348 5.89E-100 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Alide_1492 71f162f95ef0377fcbaf47167e9a305b 353 Gene3D G3DSA:3.20.20.100 1 353 2.1E-117 T 12-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 SUPERFAMILY SSF52768 4 300 2.34E-84 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 Pfam PF00491 Arginase family 4 295 5.3E-74 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 PIRSF PIRSF036979 2 299 6.6E-31 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 PRINTS PR00116 Arginase signature 174 192 3.5E-43 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 PRINTS PR00116 Arginase signature 222 251 3.5E-43 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 PRINTS PR00116 Arginase signature 257 271 3.5E-43 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 PRINTS PR00116 Arginase signature 120 147 3.5E-43 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 PRINTS PR00116 Arginase signature 93 108 3.5E-43 T 12-10-2018 IPR006035 Ureohydrolase GO:0046872 Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 ProSitePatterns PS01053 Arginase family signature. 225 246 - T 12-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 TIGRFAM TIGR01229 rocF_arginase: arginase 6 299 4.2E-89 T 12-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 Alide_0380 b6ee31a8d8703fbb4d1bab08e9f814b4 303 Gene3D G3DSA:3.40.800.10 1 300 3.7E-93 T 12-10-2018 Alide_0224 86467ba301855bf4176712f7aadbff58 441 Pfam PF02321 Outer membrane efflux protein 254 428 2.1E-17 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_0224 86467ba301855bf4176712f7aadbff58 441 Pfam PF02321 Outer membrane efflux protein 55 229 4.7E-19 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_0224 86467ba301855bf4176712f7aadbff58 441 Gene3D G3DSA:1.20.1600.10 24 432 2.1E-65 T 12-10-2018 Alide_0224 86467ba301855bf4176712f7aadbff58 441 SUPERFAMILY SSF56954 5 428 8.5E-77 T 12-10-2018 Alide_2978 47d0801bf8689a14853b43d30d9def94 140 SUPERFAMILY SSF54427 3 132 2.15E-24 T 12-10-2018 IPR032710 NTF2-like domain superfamily Alide_2978 47d0801bf8689a14853b43d30d9def94 140 Gene3D G3DSA:3.10.450.50 2 137 5.0E-25 T 12-10-2018 Alide_2978 47d0801bf8689a14853b43d30d9def94 140 Pfam PF13474 SnoaL-like domain 13 132 7.6E-13 T 12-10-2018 IPR037401 SnoaL-like domain Alide_2978 47d0801bf8689a14853b43d30d9def94 140 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 9 132 3.5E-14 T 12-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 Alide_3339 4ecbc726019843ba1c82618d8ab4b092 142 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 17 117 1.2E-16 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_3339 4ecbc726019843ba1c82618d8ab4b092 142 Gene3D G3DSA:3.10.129.10 2 138 8.4E-32 T 12-10-2018 Alide_3339 4ecbc726019843ba1c82618d8ab4b092 142 SUPERFAMILY SSF54637 4 136 2.49E-27 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_3339 4ecbc726019843ba1c82618d8ab4b092 142 Pfam PF03061 Thioesterase superfamily 47 117 2.5E-12 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 Gene3D G3DSA:1.10.10.10 11 81 7.7E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 8.3E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 8.3E-8 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 SUPERFAMILY SSF46785 9 90 9.73E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 SUPERFAMILY SSF48008 97 231 1.39E-28 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 Gene3D G3DSA:1.20.120.530 99 231 1.4E-29 T 12-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 SMART SM00345 18 77 8.3E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 SMART SM00895 100 226 1.9E-23 T 12-10-2018 IPR011711 GntR, C-terminal Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 Pfam PF07729 FCD domain 100 225 8.6E-25 T 12-10-2018 IPR011711 GntR, C-terminal Alide_2106 bc54cee8ad015576e1d02288b2c499c6 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 1.2E-21 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2783 5b372b4822096aec7fd78f4f99669249 321 Pfam PF09084 NMT1/THI5 like 39 248 1.3E-19 T 12-10-2018 IPR015168 SsuA/THI5-like Alide_2783 5b372b4822096aec7fd78f4f99669249 321 Gene3D G3DSA:3.40.190.10 125 321 7.8E-25 T 12-10-2018 Alide_2783 5b372b4822096aec7fd78f4f99669249 321 Gene3D G3DSA:3.40.190.10 25 124 2.0E-10 T 12-10-2018 Alide_2783 5b372b4822096aec7fd78f4f99669249 321 SUPERFAMILY SSF53850 37 255 3.12E-33 T 12-10-2018 Alide_1174 09f666c6138a22f046c4f873311e258b 337 SUPERFAMILY SSF53850 30 326 5.64E-64 T 12-10-2018 Alide_1174 09f666c6138a22f046c4f873311e258b 337 Gene3D G3DSA:3.40.190.10 46 297 6.0E-59 T 12-10-2018 Alide_1174 09f666c6138a22f046c4f873311e258b 337 Pfam PF13343 Bacterial extracellular solute-binding protein 77 319 6.8E-49 T 12-10-2018 Alide_1174 09f666c6138a22f046c4f873311e258b 337 Gene3D G3DSA:3.40.190.10 129 248 6.0E-59 T 12-10-2018 Alide_3734 af5ba004241eaaa861fcaae36c9ede7c 564 SUPERFAMILY SSF55811 11 216 2.39E-17 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_3734 af5ba004241eaaa861fcaae36c9ede7c 564 SMART SM00849 307 489 3.8E-24 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_3734 af5ba004241eaaa861fcaae36c9ede7c 564 Gene3D G3DSA:3.60.15.10 283 493 7.2E-41 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_3734 af5ba004241eaaa861fcaae36c9ede7c 564 SUPERFAMILY SSF56281 285 557 2.84E-47 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_3734 af5ba004241eaaa861fcaae36c9ede7c 564 Gene3D G3DSA:3.90.79.10 13 243 1.2E-53 T 12-10-2018 Alide_3734 af5ba004241eaaa861fcaae36c9ede7c 564 Gene3D G3DSA:1.10.10.10 495 559 7.9E-6 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3734 af5ba004241eaaa861fcaae36c9ede7c 564 Pfam PF00753 Metallo-beta-lactamase superfamily 307 474 2.0E-15 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_3710 11c1258ac85658c7f02584dbe875b911 463 Gene3D G3DSA:3.90.190.20 326 462 9.2E-38 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_3710 11c1258ac85658c7f02584dbe875b911 463 Gene3D G3DSA:3.40.1190.10 94 324 7.5E-71 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_3710 11c1258ac85658c7f02584dbe875b911 463 SUPERFAMILY SSF53244 339 456 5.95E-31 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_3710 11c1258ac85658c7f02584dbe875b911 463 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 10 457 30.959 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3710 11c1258ac85658c7f02584dbe875b911 463 SUPERFAMILY SSF53623 113 325 1.44E-50 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_3710 11c1258ac85658c7f02584dbe875b911 463 Pfam PF01225 Mur ligase family, catalytic domain 39 108 2.6E-9 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Alide_3710 11c1258ac85658c7f02584dbe875b911 463 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 41 455 3.5E-120 T 12-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Alide_3710 11c1258ac85658c7f02584dbe875b911 463 Pfam PF02875 Mur ligase family, glutamate ligase domain 337 404 7.6E-11 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Alide_3710 11c1258ac85658c7f02584dbe875b911 463 Gene3D G3DSA:3.40.1390.10 9 93 2.8E-17 T 12-10-2018 Alide_3710 11c1258ac85658c7f02584dbe875b911 463 SUPERFAMILY SSF63418 10 109 2.22E-17 T 12-10-2018 IPR035911 MurE/MurF, N-terminal Alide_3710 11c1258ac85658c7f02584dbe875b911 463 Pfam PF08245 Mur ligase middle domain 118 306 2.1E-38 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Alide_0311 44a1d59eb0e9fad7662a5225df88efac 309 SUPERFAMILY SSF53850 88 297 1.2E-41 T 12-10-2018 Alide_0311 44a1d59eb0e9fad7662a5225df88efac 309 Pfam PF03466 LysR substrate binding domain 90 291 1.9E-36 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0311 44a1d59eb0e9fad7662a5225df88efac 309 SUPERFAMILY SSF46785 2 107 5.99E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0311 44a1d59eb0e9fad7662a5225df88efac 309 Gene3D G3DSA:1.10.10.10 3 91 3.9E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0311 44a1d59eb0e9fad7662a5225df88efac 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.3E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0311 44a1d59eb0e9fad7662a5225df88efac 309 Gene3D G3DSA:3.40.190.290 93 301 7.7E-36 T 12-10-2018 Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 SUPERFAMILY SSF53850 100 304 2.85E-31 T 12-10-2018 Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 Pfam PF03466 LysR substrate binding domain 99 298 5.4E-35 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 7.6E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 7.6E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 7.6E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 1.1E-24 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 Gene3D G3DSA:3.40.190.10 173 276 1.1E-65 T 12-10-2018 Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 Gene3D G3DSA:3.40.190.10 104 301 1.1E-65 T 12-10-2018 Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 Gene3D G3DSA:1.10.10.10 11 103 4.6E-34 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2652 126d1d8141ff42602b8d1011d20eca3a 316 SUPERFAMILY SSF46785 11 97 1.8E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3885 84866780720b55a01f6907b4d6201049 381 Hamap MF_00416 Flagellar P-ring protein [flgI]. 17 381 37.301 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 PRINTS PR01010 Flagellar P-ring protein signature 37 52 8.9E-79 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 PRINTS PR01010 Flagellar P-ring protein signature 52 67 8.9E-79 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 PRINTS PR01010 Flagellar P-ring protein signature 268 280 8.9E-79 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 PRINTS PR01010 Flagellar P-ring protein signature 72 87 8.9E-79 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 PRINTS PR01010 Flagellar P-ring protein signature 99 118 8.9E-79 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 PRINTS PR01010 Flagellar P-ring protein signature 204 222 8.9E-79 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 PRINTS PR01010 Flagellar P-ring protein signature 138 156 8.9E-79 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 PRINTS PR01010 Flagellar P-ring protein signature 178 196 8.9E-79 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 PRINTS PR01010 Flagellar P-ring protein signature 121 138 8.9E-79 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_3885 84866780720b55a01f6907b4d6201049 381 Pfam PF02119 Flagellar P-ring protein 37 380 2.4E-135 T 12-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 Alide_4386 6e50f686434a1c5cd0accaf30c6c48d5 395 Pfam PF00990 Diguanylate cyclase, GGDEF domain 219 377 3.7E-47 T 12-10-2018 IPR000160 GGDEF domain Alide_4386 6e50f686434a1c5cd0accaf30c6c48d5 395 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 219 380 5.3E-53 T 12-10-2018 IPR000160 GGDEF domain Alide_4386 6e50f686434a1c5cd0accaf30c6c48d5 395 SMART SM00267 208 381 2.1E-61 T 12-10-2018 IPR000160 GGDEF domain Alide_4386 6e50f686434a1c5cd0accaf30c6c48d5 395 Gene3D G3DSA:3.30.70.270 214 384 1.5E-60 T 12-10-2018 Alide_4386 6e50f686434a1c5cd0accaf30c6c48d5 395 SUPERFAMILY SSF55073 224 380 8.63E-51 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_3283 9403ec15dbe17bd068d2932cf32969d5 376 SUPERFAMILY SSF53901 236 370 1.49E-18 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3283 9403ec15dbe17bd068d2932cf32969d5 376 SUPERFAMILY SSF53901 4 224 3.01E-27 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3283 9403ec15dbe17bd068d2932cf32969d5 376 Gene3D G3DSA:3.40.47.10 1 376 1.6E-104 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_3283 9403ec15dbe17bd068d2932cf32969d5 376 PIRSF PIRSF000429 1 370 1.7E-33 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 54 249 7.3E-85 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 Pfam PF00813 FliP family 54 245 2.0E-78 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 226 238 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 178 193 - T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 149 161 4.9E-26 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 171 183 4.9E-26 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 239 249 4.9E-26 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 121 135 4.9E-26 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 49 58 4.9E-26 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 109 121 4.9E-26 T 12-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 70 90 3.4E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 178 198 3.4E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 199 220 3.4E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 51 70 3.4E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 90 109 3.4E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Alide_3847 6b529723085c954bf27da0c2f0a4ac4f 251 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 223 248 3.4E-65 T 12-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Alide_3157 a45c2ab4e2be9b59fe0ad0410ce534be 231 Pfam PF13649 Methyltransferase domain 62 156 8.2E-11 T 12-10-2018 Alide_3157 a45c2ab4e2be9b59fe0ad0410ce534be 231 Gene3D G3DSA:3.40.50.150 6 200 3.2E-21 T 12-10-2018 Alide_3157 a45c2ab4e2be9b59fe0ad0410ce534be 231 SUPERFAMILY SSF53335 45 190 2.46E-22 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2628 f5f93e9b1480b8a9d1a5e945f9cc4b3f 60 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 28.042 T 12-10-2018 IPR038053 Uncharacterised protein family UPF0434 Alide_2628 f5f93e9b1480b8a9d1a5e945f9cc4b3f 60 Pfam PF03966 Trm112p-like protein 2 41 6.6E-11 T 12-10-2018 IPR005651 Trm112-like Alide_2628 f5f93e9b1480b8a9d1a5e945f9cc4b3f 60 Gene3D G3DSA:2.20.25.10 8 60 3.5E-26 T 12-10-2018 Alide_2628 f5f93e9b1480b8a9d1a5e945f9cc4b3f 60 SUPERFAMILY SSF158997 1 56 3.14E-21 T 12-10-2018 Alide_0850 114de160e8ca7936f60342b3caa5c071 501 Pfam PF00171 Aldehyde dehydrogenase family 22 479 8.9E-136 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_0850 114de160e8ca7936f60342b3caa5c071 501 SUPERFAMILY SSF53720 3 485 1.13E-145 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_0850 114de160e8ca7936f60342b3caa5c071 501 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 8 483 2.4E-216 T 12-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 Alide_0850 114de160e8ca7936f60342b3caa5c071 501 Gene3D G3DSA:3.40.605.10 26 460 5.1E-144 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_0850 114de160e8ca7936f60342b3caa5c071 501 Gene3D G3DSA:3.40.309.10 252 452 5.1E-144 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_0850 114de160e8ca7936f60342b3caa5c071 501 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_1935 63595418bc32289e9910f21038cdf277 216 SUPERFAMILY SSF46626 78 177 9.9E-15 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_1935 63595418bc32289e9910f21038cdf277 216 SUPERFAMILY SSF46626 7 75 6.96E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_1935 63595418bc32289e9910f21038cdf277 216 Pfam PF00034 Cytochrome c 92 177 4.8E-5 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1935 63595418bc32289e9910f21038cdf277 216 Gene3D G3DSA:1.10.760.10 3 74 4.7E-17 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_1935 63595418bc32289e9910f21038cdf277 216 PIRSF PIRSF000005 1 180 1.6E-58 T 12-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Alide_1935 63595418bc32289e9910f21038cdf277 216 Gene3D G3DSA:1.10.760.10 85 177 8.2E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_4215 29ad280bb78e4fcca17997e4bcf4cd05 577 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 23 573 2.3E-238 T 12-10-2018 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative Alide_4215 29ad280bb78e4fcca17997e4bcf4cd05 577 SUPERFAMILY SSF161098 315 557 6.67E-35 T 12-10-2018 IPR035906 MetI-like superfamily Alide_4215 29ad280bb78e4fcca17997e4bcf4cd05 577 Gene3D G3DSA:1.10.3720.10 314 565 1.8E-33 T 12-10-2018 IPR035906 MetI-like superfamily Alide_4215 29ad280bb78e4fcca17997e4bcf4cd05 577 Gene3D G3DSA:1.10.3720.10 27 291 1.5E-45 T 12-10-2018 IPR035906 MetI-like superfamily Alide_4215 29ad280bb78e4fcca17997e4bcf4cd05 577 SUPERFAMILY SSF161098 22 281 5.05E-42 T 12-10-2018 IPR035906 MetI-like superfamily Alide_4215 29ad280bb78e4fcca17997e4bcf4cd05 577 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 289 6.1E-11 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_4215 29ad280bb78e4fcca17997e4bcf4cd05 577 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 381 559 1.4E-6 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 SUPERFAMILY SSF46934 3 56 2.68E-13 T 12-10-2018 IPR009060 UBA-like superfamily GO:0005515 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 Gene3D G3DSA:3.30.479.20 156 273 4.4E-36 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 Gene3D G3DSA:1.10.286.20 191 237 4.4E-36 T 12-10-2018 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 291 1.7E-84 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 Gene3D G3DSA:1.10.8.10 1 56 9.9E-20 T 12-10-2018 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 SUPERFAMILY SSF54713 56 148 1.6E-21 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 Gene3D G3DSA:3.30.479.20 57 151 5.0E-24 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 Hamap MF_00050 Elongation factor Ts [tsf]. 1 291 75.931 T 12-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 SUPERFAMILY SSF54713 153 291 1.03E-45 T 12-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 Pfam PF00889 Elongation factor TS 71 274 2.2E-64 T 12-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 Alide_1465 89602f9c6b3f6508b9d8ec338496aca6 298 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 12-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Alide_1593 66605571c6a9798c795f6c0332758117 173 Gene3D G3DSA:3.30.1330.60 41 172 8.8E-15 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_1593 66605571c6a9798c795f6c0332758117 173 PRINTS PR01021 OMPA domain signature 78 100 4.8E-5 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_1593 66605571c6a9798c795f6c0332758117 173 PRINTS PR01021 OMPA domain signature 122 138 4.8E-5 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_1593 66605571c6a9798c795f6c0332758117 173 PRINTS PR01021 OMPA domain signature 107 122 4.8E-5 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_1593 66605571c6a9798c795f6c0332758117 173 SUPERFAMILY SSF103088 74 172 1.57E-15 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_1593 66605571c6a9798c795f6c0332758117 173 Pfam PF00691 OmpA family 77 149 3.5E-11 T 12-10-2018 IPR006665 OmpA-like domain Alide_3465 d6b7b91f4dd3314da3e3bc8df6c23c2d 228 SUPERFAMILY SSF56529 3 217 1.68E-32 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_3465 d6b7b91f4dd3314da3e3bc8df6c23c2d 228 Gene3D G3DSA:3.90.850.10 1 227 1.1E-51 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_3266 239023678160cedd5303515d220300ff 86 SUPERFAMILY SSF54285 5 84 1.76E-18 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Alide_3266 239023678160cedd5303515d220300ff 86 Pfam PF02597 ThiS family 8 86 7.1E-16 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 Alide_3266 239023678160cedd5303515d220300ff 86 Gene3D G3DSA:3.10.20.30 5 86 3.3E-20 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_4150 7533df83b2245bae67006d9513c28846 328 Pfam PF01544 CorA-like Mg2+ transporter protein 29 323 3.3E-55 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Alide_4150 7533df83b2245bae67006d9513c28846 328 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 3 327 8.5E-69 T 12-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 Alide_4150 7533df83b2245bae67006d9513c28846 328 Gene3D G3DSA:1.20.58.340 251 327 1.4E-25 T 12-10-2018 Alide_4150 7533df83b2245bae67006d9513c28846 328 SUPERFAMILY SSF143865 1 266 4.58E-37 T 12-10-2018 Alide_4150 7533df83b2245bae67006d9513c28846 328 SUPERFAMILY SSF144083 262 324 9.55E-20 T 12-10-2018 Alide_4454 1bef826ff6b2e4fbed215afd4d4090d3 94 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 89 6.1E-18 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Alide_4454 1bef826ff6b2e4fbed215afd4d4090d3 94 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 2 85 1.5E-12 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Alide_4454 1bef826ff6b2e4fbed215afd4d4090d3 94 Gene3D G3DSA:3.30.2310.20 1 90 4.2E-27 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Alide_0171 a7ea1d8c97c22a3b3518711a606129a1 341 SMART SM00829 13 334 5.0E-17 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_0171 a7ea1d8c97c22a3b3518711a606129a1 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 92 1.8E-7 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_0171 a7ea1d8c97c22a3b3518711a606129a1 341 Gene3D G3DSA:3.40.50.720 128 271 8.2E-80 T 12-10-2018 Alide_0171 a7ea1d8c97c22a3b3518711a606129a1 341 Pfam PF00107 Zinc-binding dehydrogenase 156 279 1.2E-25 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_0171 a7ea1d8c97c22a3b3518711a606129a1 341 Gene3D G3DSA:3.90.180.10 17 330 8.2E-80 T 12-10-2018 Alide_0171 a7ea1d8c97c22a3b3518711a606129a1 341 SUPERFAMILY SSF51735 118 279 1.53E-39 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0171 a7ea1d8c97c22a3b3518711a606129a1 341 SUPERFAMILY SSF50129 4 145 2.74E-29 T 12-10-2018 IPR011032 GroES-like superfamily Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 Gene3D G3DSA:1.20.1270.10 525 621 2.9E-27 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 207 220 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 PRINTS PR00301 70kDa heat shock protein signature 365 385 6.7E-58 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 PRINTS PR00301 70kDa heat shock protein signature 334 350 6.7E-58 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 PRINTS PR00301 70kDa heat shock protein signature 213 223 6.7E-58 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 PRINTS PR00301 70kDa heat shock protein signature 20 33 6.7E-58 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 PRINTS PR00301 70kDa heat shock protein signature 48 60 6.7E-58 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 PRINTS PR00301 70kDa heat shock protein signature 471 487 6.7E-58 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 PRINTS PR00301 70kDa heat shock protein signature 154 174 6.7E-58 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 PRINTS PR00301 70kDa heat shock protein signature 390 409 6.7E-58 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 620 7.6E-269 T 12-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 SUPERFAMILY SSF100934 509 620 3.92E-34 T 12-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 SUPERFAMILY SSF53067 202 381 2.25E-48 T 12-10-2018 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 12-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 Gene3D G3DSA:3.90.640.10 240 316 7.3E-108 T 12-10-2018 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 Pfam PF00012 Hsp70 protein 21 605 2.4E-176 T 12-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 Gene3D G3DSA:3.30.420.40 196 366 7.3E-108 T 12-10-2018 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 622 41.672 T 12-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 SUPERFAMILY SSF53067 19 198 1.55E-49 T 12-10-2018 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 SUPERFAMILY SSF100920 389 541 1.27E-47 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 Gene3D G3DSA:3.30.420.40 22 379 7.3E-108 T 12-10-2018 Alide_2212 2fcc03efbce78429f0cbe6cbd05d79c8 622 Gene3D G3DSA:2.60.34.10 384 523 2.4E-47 T 12-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Alide_0086 64a8f672caf21f4006c8ecf13a899dda 428 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 347 367 - T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Alide_0086 64a8f672caf21f4006c8ecf13a899dda 428 Pfam PF00860 Permease family 30 399 1.9E-90 T 12-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Alide_0086 64a8f672caf21f4006c8ecf13a899dda 428 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 26 422 1.1E-106 T 12-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 Gene3D G3DSA:3.40.190.10 93 288 1.1E-52 T 12-10-2018 Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 Pfam PF03466 LysR substrate binding domain 87 293 3.5E-39 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 SUPERFAMILY SSF53850 88 298 7.14E-37 T 12-10-2018 Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 Gene3D G3DSA:3.40.190.10 164 270 1.1E-52 T 12-10-2018 Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 Gene3D G3DSA:1.10.10.10 1 83 9.4E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 SUPERFAMILY SSF46785 1 86 1.01E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0090 5d960fa603abef6b28adcb647adf2fa3 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.3E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1202 5247c9db5e6a6c586943323439f77350 175 Pfam PF13420 Acetyltransferase (GNAT) domain 6 159 1.4E-22 T 12-10-2018 Alide_1202 5247c9db5e6a6c586943323439f77350 175 SUPERFAMILY SSF55729 5 167 1.29E-32 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_1202 5247c9db5e6a6c586943323439f77350 175 Gene3D G3DSA:3.40.630.30 1 175 1.8E-52 T 12-10-2018 Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 SUPERFAMILY SSF46785 38 121 4.68E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 SUPERFAMILY SSF53850 125 329 4.83E-38 T 12-10-2018 Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 Gene3D G3DSA:3.40.190.10 199 304 5.1E-59 T 12-10-2018 Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 76 87 1.1E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 66 76 1.1E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 55 66 1.1E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 Gene3D G3DSA:1.10.10.10 34 122 6.8E-30 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 Pfam PF03466 LysR substrate binding domain 124 324 2.1E-39 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 Gene3D G3DSA:3.40.190.10 126 323 5.1E-59 T 12-10-2018 Alide_0118 c49679df2d3b88aa5f08c4c6608a245c 333 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 40 98 2.5E-20 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0444 c80a5ee9348bdbd98fce62326d7b050e 270 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 38 2.1E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0444 c80a5ee9348bdbd98fce62326d7b050e 270 Pfam PF03466 LysR substrate binding domain 56 263 3.2E-35 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0444 c80a5ee9348bdbd98fce62326d7b050e 270 Gene3D G3DSA:1.10.10.10 1 59 3.2E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0444 c80a5ee9348bdbd98fce62326d7b050e 270 SUPERFAMILY SSF53850 57 266 1.5E-37 T 12-10-2018 Alide_0444 c80a5ee9348bdbd98fce62326d7b050e 270 SUPERFAMILY SSF46785 1 80 4.34E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0444 c80a5ee9348bdbd98fce62326d7b050e 270 Gene3D G3DSA:3.40.190.10 60 263 1.7E-57 T 12-10-2018 Alide_0444 c80a5ee9348bdbd98fce62326d7b050e 270 Gene3D G3DSA:3.40.190.10 132 238 1.7E-57 T 12-10-2018 Alide_1687 7b021447137571aff23d2f740d57d2fc 107 Pfam PF14213 STAS-like domain of unknown function (DUF4325) 25 88 1.7E-13 T 12-10-2018 IPR025474 Domain of unknown function DUF4325 Alide_2445 fc327f7c03f4e4e6e60e368c49d615e4 169 Gene3D G3DSA:1.20.1550.10 5 168 2.8E-44 T 12-10-2018 IPR023380 DsbB-like superfamily Alide_2445 fc327f7c03f4e4e6e60e368c49d615e4 169 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 6 167 20.678 T 12-10-2018 IPR022920 Disulphide bond formation protein DsbB Alide_2445 fc327f7c03f4e4e6e60e368c49d615e4 169 Pfam PF02600 Disulfide bond formation protein DsbB 11 159 1.6E-39 T 12-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 Alide_2445 fc327f7c03f4e4e6e60e368c49d615e4 169 SUPERFAMILY SSF158442 15 160 4.45E-39 T 12-10-2018 IPR023380 DsbB-like superfamily Alide_2316 e71d1ad61056b75f3f1cd0b25a76b08c 193 Gene3D G3DSA:1.20.1290.10 63 186 2.6E-41 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_2316 e71d1ad61056b75f3f1cd0b25a76b08c 193 Pfam PF02627 Carboxymuconolactone decarboxylase family 46 95 4.7E-12 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_2316 e71d1ad61056b75f3f1cd0b25a76b08c 193 Gene3D G3DSA:1.20.5.810 9 61 1.4E-24 T 12-10-2018 Alide_2316 e71d1ad61056b75f3f1cd0b25a76b08c 193 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 61 94 1.5E-10 T 12-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_2316 e71d1ad61056b75f3f1cd0b25a76b08c 193 SUPERFAMILY SSF69118 4 188 6.53E-56 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_2316 e71d1ad61056b75f3f1cd0b25a76b08c 193 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 6 180 2.0E-67 T 12-10-2018 IPR010195 Uncharacterised peroxidase-related Alide_2852 08062b3b6f145a7d73305f9fee4d2157 549 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 29 486 4.2E-88 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Alide_2852 08062b3b6f145a7d73305f9fee4d2157 549 Gene3D G3DSA:2.20.200.10 118 375 6.6E-117 T 12-10-2018 Alide_2852 08062b3b6f145a7d73305f9fee4d2157 549 Pfam PF02321 Outer membrane efflux protein 81 275 8.3E-19 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2852 08062b3b6f145a7d73305f9fee4d2157 549 Pfam PF02321 Outer membrane efflux protein 306 484 6.5E-25 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2852 08062b3b6f145a7d73305f9fee4d2157 549 SUPERFAMILY SSF56954 20 488 4.45E-97 T 12-10-2018 Alide_2852 08062b3b6f145a7d73305f9fee4d2157 549 Gene3D G3DSA:1.20.1600.10 71 487 6.6E-117 T 12-10-2018 Alide_0117 54c178e04d3caa0496eff03817f49974 343 PIRSF PIRSF037505 59 341 1.9E-7 T 12-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 Alide_0117 54c178e04d3caa0496eff03817f49974 343 Pfam PF02574 Homocysteine S-methyltransferase 22 330 3.6E-79 T 12-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Alide_0117 54c178e04d3caa0496eff03817f49974 343 SUPERFAMILY SSF82282 13 333 1.44E-95 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 Alide_0117 54c178e04d3caa0496eff03817f49974 343 Gene3D G3DSA:3.20.20.330 5 339 3.2E-123 T 12-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 Alide_1952 8c74a7cda98c250095fddd0ee0e5d710 167 Pfam PF13511 Domain of unknown function (DUF4124) 9 63 3.7E-6 T 12-10-2018 IPR025392 Domain of unknown function DUF4124 Alide_3907 80a9744d6966076faa4888fa7d6d8349 700 Gene3D G3DSA:3.40.30.10 593 699 2.3E-11 T 12-10-2018 Alide_3907 80a9744d6966076faa4888fa7d6d8349 700 Pfam PF13899 Thioredoxin-like 596 675 2.9E-17 T 12-10-2018 Alide_3907 80a9744d6966076faa4888fa7d6d8349 700 Pfam PF11412 Disulphide bond corrector protein DsbC 28 142 3.6E-21 T 12-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Alide_3907 80a9744d6966076faa4888fa7d6d8349 700 ProSitePatterns PS00194 Thioredoxin family active site. 610 628 - T 12-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 Alide_3907 80a9744d6966076faa4888fa7d6d8349 700 SUPERFAMILY SSF52833 599 698 9.78E-15 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3907 80a9744d6966076faa4888fa7d6d8349 700 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 308 484 1.2E-12 T 12-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 Alide_0871 33ae63ed9f32dc30209a7aee95299613 82 Pfam PF01722 BolA-like protein 22 74 1.8E-16 T 12-10-2018 IPR002634 BolA protein Alide_0871 33ae63ed9f32dc30209a7aee95299613 82 Gene3D G3DSA:3.30.300.90 1 82 6.2E-28 T 12-10-2018 Alide_0871 33ae63ed9f32dc30209a7aee95299613 82 PIRSF PIRSF003113 1 82 1.9E-21 T 12-10-2018 IPR002634 BolA protein Alide_0871 33ae63ed9f32dc30209a7aee95299613 82 SUPERFAMILY SSF82657 1 79 5.62E-27 T 12-10-2018 IPR036065 BolA-like superfamily Alide_4424 a501c3e1fdfa2a59e143a96f9433b0dd 1448 Pfam PF08401 Domain of unknown function (DUF1738) 226 346 2.3E-32 T 12-10-2018 IPR013610 Domain of unknown function DUF1738 Alide_4424 a501c3e1fdfa2a59e143a96f9433b0dd 1448 Pfam PF13362 Toprim domain 1239 1316 6.7E-7 T 12-10-2018 IPR006171 TOPRIM domain Alide_4424 a501c3e1fdfa2a59e143a96f9433b0dd 1448 SMART SM00493 1237 1319 7.4E-5 T 12-10-2018 IPR006171 TOPRIM domain Alide_4015 ca11852b91d70848d7a548f673645cf5 200 Pfam PF01464 Transglycosylase SLT domain 40 161 2.5E-7 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_4015 ca11852b91d70848d7a548f673645cf5 200 SUPERFAMILY SSF53955 37 180 1.13E-16 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_4015 ca11852b91d70848d7a548f673645cf5 200 Gene3D G3DSA:1.10.530.10 35 194 7.0E-10 T 12-10-2018 Alide_1880 03c2b12dbefaaa6d016e6c0c7c8b6b33 308 Gene3D G3DSA:3.40.710.10 8 308 9.5E-98 T 12-10-2018 Alide_1880 03c2b12dbefaaa6d016e6c0c7c8b6b33 308 TIGRFAM TIGR03814 Gln_ase: glutaminase A 19 308 1.1E-110 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Alide_1880 03c2b12dbefaaa6d016e6c0c7c8b6b33 308 Hamap MF_00313 Glutaminase [glsA]. 9 308 41.807 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Alide_1880 03c2b12dbefaaa6d016e6c0c7c8b6b33 308 Pfam PF04960 Glutaminase 27 308 2.0E-102 T 12-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Alide_1880 03c2b12dbefaaa6d016e6c0c7c8b6b33 308 SUPERFAMILY SSF56601 22 308 3.18E-96 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Alide_0952 a062a5531da04207282fba5287b8f824 139 Pfam PF06155 Protein of unknown function (DUF971) 14 98 4.8E-29 T 12-10-2018 IPR010376 Gamma-butyrobetaine hydroxylase-like, N-terminal Reactome: R-HSA-71262 Alide_0952 a062a5531da04207282fba5287b8f824 139 Gene3D G3DSA:3.30.2020.30 4 103 7.4E-29 T 12-10-2018 IPR038492 GBBH-like, N-terminal domain superfamily Reactome: R-HSA-71262 Alide_1059 fa5abed9b4e81f3dd9d6922e836393c4 498 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 485 17.701 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 Alide_1059 fa5abed9b4e81f3dd9d6922e836393c4 498 Pfam PF00361 Proton-conducting membrane transporter 127 431 4.9E-70 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1059 fa5abed9b4e81f3dd9d6922e836393c4 498 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 8 481 6.2E-130 T 12-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 Alide_2621 f38d2afa7fc8bab2ca29e4fca9ef41d5 157 Gene3D G3DSA:2.60.120.1140 30 156 2.0E-39 T 12-10-2018 IPR038695 Saro_0823-like superfamily Alide_2621 f38d2afa7fc8bab2ca29e4fca9ef41d5 157 Pfam PF02643 Uncharacterized ACR, COG1430 46 147 7.5E-32 T 12-10-2018 IPR003795 Protein of unknown function DUF192 Alide_2584 b581241f0b18ed65b151aebdecfc0fe3 211 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 43 190 7.6E-31 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Alide_3890 e30d00303c9510c77cd1406943b328ec 331 Pfam PF03060 Nitronate monooxygenase 12 322 1.3E-43 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Alide_3890 e30d00303c9510c77cd1406943b328ec 331 Gene3D G3DSA:3.20.20.70 7 331 3.8E-79 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3890 e30d00303c9510c77cd1406943b328ec 331 SUPERFAMILY SSF51412 8 329 3.21E-51 T 12-10-2018 Alide_2558 c45c7189b4d0dad7bcd1a89447c10875 128 Pfam PF04993 TfoX N-terminal domain 25 110 6.8E-13 T 12-10-2018 IPR007076 TfoX, N-terminal Alide_2558 c45c7189b4d0dad7bcd1a89447c10875 128 SUPERFAMILY SSF159894 19 112 2.46E-12 T 12-10-2018 Alide_1031 b0b5fd3b7397b10070300563cbffcb1c 445 Pfam PF14065 Protein of unknown function (DUF4255) 10 212 2.2E-46 T 12-10-2018 IPR025351 Protein of unknown function DUF4255 Alide_4142 316573dfed839647da2219fe00884545 568 Gene3D G3DSA:2.130.10.10 234 484 6.0E-12 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Alide_4142 316573dfed839647da2219fe00884545 568 SUPERFAMILY SSF110296 281 558 5.75E-18 T 12-10-2018 Alide_4142 316573dfed839647da2219fe00884545 568 Gene3D G3DSA:2.60.40.10 61 166 1.4E-13 T 12-10-2018 IPR013783 Immunoglobulin-like fold Alide_4142 316573dfed839647da2219fe00884545 568 Pfam PF15780 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin 68 149 5.3E-8 T 12-10-2018 IPR031549 Abnormal spindle-like microcephaly-associated protein, ASH domain Alide_1907 a3373256cee6612ffc08200e9bb5187a 302 SUPERFAMILY SSF53850 98 301 5.43E-42 T 12-10-2018 Alide_1907 a3373256cee6612ffc08200e9bb5187a 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 71 1.5E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1907 a3373256cee6612ffc08200e9bb5187a 302 Gene3D G3DSA:1.10.10.10 11 94 3.6E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1907 a3373256cee6612ffc08200e9bb5187a 302 Pfam PF03466 LysR substrate binding domain 97 301 6.0E-39 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1907 a3373256cee6612ffc08200e9bb5187a 302 Gene3D G3DSA:3.40.190.290 100 302 9.4E-40 T 12-10-2018 Alide_1907 a3373256cee6612ffc08200e9bb5187a 302 SUPERFAMILY SSF46785 8 121 1.14E-21 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4107 94301a1eb4828a5232872e464f5e1d9e 447 Pfam PF01400 Astacin (Peptidase family M12A) 94 278 1.6E-51 T 12-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 Alide_4107 94301a1eb4828a5232872e464f5e1d9e 447 SUPERFAMILY SSF55486 92 279 9.11E-46 T 12-10-2018 Alide_4107 94301a1eb4828a5232872e464f5e1d9e 447 PRINTS PR00480 Astacin family signature 189 206 5.2E-22 T 12-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 Alide_4107 94301a1eb4828a5232872e464f5e1d9e 447 PRINTS PR00480 Astacin family signature 170 188 5.2E-22 T 12-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 Alide_4107 94301a1eb4828a5232872e464f5e1d9e 447 PRINTS PR00480 Astacin family signature 114 132 5.2E-22 T 12-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 Alide_4107 94301a1eb4828a5232872e464f5e1d9e 447 PRINTS PR00480 Astacin family signature 226 241 5.2E-22 T 12-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 Alide_4107 94301a1eb4828a5232872e464f5e1d9e 447 PRINTS PR00480 Astacin family signature 266 279 5.2E-22 T 12-10-2018 IPR001506 Peptidase M12A GO:0004222|GO:0006508 Alide_4107 94301a1eb4828a5232872e464f5e1d9e 447 Gene3D G3DSA:3.40.390.10 40 280 3.9E-66 T 12-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 Alide_4107 94301a1eb4828a5232872e464f5e1d9e 447 SMART SM00235 91 231 7.1E-40 T 12-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 Alide_2133 ad07fafcb190ba69cee0442b6d4c3844 282 Gene3D G3DSA:3.30.1600.10 43 205 2.5E-78 T 12-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily Alide_2133 ad07fafcb190ba69cee0442b6d4c3844 282 Hamap MF_01967 NAD-dependent protein deacetylase [cobB]. 9 280 62.698 T 12-10-2018 IPR026587 Sirtuin, class II Reactome: R-HSA-2151201 Alide_2133 ad07fafcb190ba69cee0442b6d4c3844 282 Pfam PF02146 Sir2 family 33 236 2.0E-42 T 12-10-2018 IPR003000 Sirtuin family GO:0070403 Alide_2133 ad07fafcb190ba69cee0442b6d4c3844 282 Gene3D G3DSA:3.40.50.1220 22 277 2.5E-78 T 12-10-2018 Alide_2133 ad07fafcb190ba69cee0442b6d4c3844 282 SUPERFAMILY SSF52467 16 280 3.57E-78 T 12-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Alide_1971 86c93a98ae500551116571be14237f76 449 SUPERFAMILY SSF55424 335 449 4.3E-35 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_1971 86c93a98ae500551116571be14237f76 449 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 448 3.5E-34 T 12-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Alide_1971 86c93a98ae500551116571be14237f76 449 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 2 449 3.2E-207 T 12-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 Alide_1971 86c93a98ae500551116571be14237f76 449 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 38 48 - T 12-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Alide_1971 86c93a98ae500551116571be14237f76 449 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 317 3.0E-67 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_1971 86c93a98ae500551116571be14237f76 449 Gene3D G3DSA:3.50.50.60 143 260 1.3E-120 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1971 86c93a98ae500551116571be14237f76 449 Gene3D G3DSA:3.50.50.60 4 317 1.3E-120 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 2.4E-68 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 37 52 2.4E-68 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 2.4E-68 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 2.4E-68 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 2.4E-68 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 2.4E-68 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 2.4E-68 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.4E-68 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 2.4E-68 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 Gene3D G3DSA:3.30.390.30 337 449 1.6E-46 T 12-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Alide_1971 86c93a98ae500551116571be14237f76 449 SUPERFAMILY SSF51905 1 364 3.89E-60 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1971 86c93a98ae500551116571be14237f76 449 PIRSF PIRSF000350 1 446 4.8E-85 T 12-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 2.6E-30 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 2.6E-30 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 2.6E-30 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 2.6E-30 T 12-10-2018 Alide_1971 86c93a98ae500551116571be14237f76 449 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.6E-30 T 12-10-2018 Alide_0567 622492ebbd4f2ea8e1e4282f03bc7efd 494 Pfam PF01048 Phosphorylase superfamily 280 439 1.1E-12 T 12-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Alide_0567 622492ebbd4f2ea8e1e4282f03bc7efd 494 SUPERFAMILY SSF53167 17 494 4.95E-147 T 12-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Alide_0567 622492ebbd4f2ea8e1e4282f03bc7efd 494 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 18 494 1.7E-195 T 12-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Alide_0567 622492ebbd4f2ea8e1e4282f03bc7efd 494 Gene3D G3DSA:3.30.1730.10 10 178 3.4E-52 T 12-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Alide_0567 622492ebbd4f2ea8e1e4282f03bc7efd 494 Gene3D G3DSA:3.40.50.1580 179 494 6.5E-101 T 12-10-2018 Alide_0567 622492ebbd4f2ea8e1e4282f03bc7efd 494 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 20 173 3.2E-53 T 12-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Alide_0567 622492ebbd4f2ea8e1e4282f03bc7efd 494 Hamap MF_01932 AMP nucleosidase [amn]. 10 494 61.107 T 12-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 Gene3D G3DSA:3.30.565.10 339 492 1.3E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 Gene3D G3DSA:1.10.287.130 271 333 9.0E-18 T 12-10-2018 Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 SUPERFAMILY SSF47384 262 330 1.22E-8 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 SMART SM00387 380 491 1.4E-26 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 381 489 1.1E-19 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 SMART SM00388 266 336 6.5E-8 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 Pfam PF00512 His Kinase A (phospho-acceptor) domain 267 330 3.1E-12 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 SUPERFAMILY SSF55874 340 489 2.1E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 449 6.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 435 6.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 468 6.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_1617 79b5676c7cc1ebee41d689206afc6b1f 493 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 488 6.7E-14 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_3957 1c470b8709c8994f21605d71e5314810 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.048 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3957 1c470b8709c8994f21605d71e5314810 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3957 1c470b8709c8994f21605d71e5314810 129 SUPERFAMILY SSF64263 1 118 6.8E-51 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3957 1c470b8709c8994f21605d71e5314810 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 3.6E-47 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3957 1c470b8709c8994f21605d71e5314810 129 Gene3D G3DSA:3.90.1030.10 1 116 1.5E-47 T 12-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3957 1c470b8709c8994f21605d71e5314810 129 Pfam PF01196 Ribosomal protein L17 20 116 2.5E-35 T 12-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3506 c20ae84ea4c08f8a979bc2ab485bf145 395 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 381 2.6E-104 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_3506 c20ae84ea4c08f8a979bc2ab485bf145 395 Pfam PF07687 Peptidase dimerisation domain 192 280 2.4E-4 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_3506 c20ae84ea4c08f8a979bc2ab485bf145 395 Gene3D G3DSA:3.30.70.360 187 301 4.1E-129 T 12-10-2018 Alide_3506 c20ae84ea4c08f8a979bc2ab485bf145 395 SUPERFAMILY SSF53187 9 394 7.86E-86 T 12-10-2018 Alide_3506 c20ae84ea4c08f8a979bc2ab485bf145 395 SUPERFAMILY SSF55031 190 302 2.62E-28 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_3506 c20ae84ea4c08f8a979bc2ab485bf145 395 Gene3D G3DSA:3.40.630.10 19 378 4.1E-129 T 12-10-2018 Alide_3506 c20ae84ea4c08f8a979bc2ab485bf145 395 Pfam PF01546 Peptidase family M20/M25/M40 77 390 2.0E-33 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_3506 c20ae84ea4c08f8a979bc2ab485bf145 395 PIRSF PIRSF005962 7 394 2.2E-113 T 12-10-2018 IPR017439 Amidohydrolase GO:0016787 Alide_0082 f7b7ca8d31d46b48cdef6debf15d9064 336 Gene3D G3DSA:3.40.190.150 42 326 2.6E-113 T 12-10-2018 Alide_0082 f7b7ca8d31d46b48cdef6debf15d9064 336 PIRSF PIRSF017082 4 334 3.3E-91 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0082 f7b7ca8d31d46b48cdef6debf15d9064 336 Gene3D G3DSA:3.40.190.10 139 261 2.6E-113 T 12-10-2018 Alide_0082 f7b7ca8d31d46b48cdef6debf15d9064 336 SUPERFAMILY SSF53850 131 297 1.01E-17 T 12-10-2018 Alide_0082 f7b7ca8d31d46b48cdef6debf15d9064 336 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 61 330 1.1E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4301 58471c6547a269cf52542afa59271445 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 324 2.5E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4301 58471c6547a269cf52542afa59271445 329 Gene3D G3DSA:3.40.190.150 34 319 6.4E-109 T 12-10-2018 Alide_4301 58471c6547a269cf52542afa59271445 329 PIRSF PIRSF017082 2 329 3.6E-70 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4301 58471c6547a269cf52542afa59271445 329 SUPERFAMILY SSF53850 81 294 1.43E-12 T 12-10-2018 Alide_4301 58471c6547a269cf52542afa59271445 329 Gene3D G3DSA:3.40.190.10 131 254 6.4E-109 T 12-10-2018 Alide_1974 66f7bd14eb0ee2cfd150b860a3631ffd 263 SMART SM01092 169 261 4.1E-15 T 12-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal Alide_1974 66f7bd14eb0ee2cfd150b860a3631ffd 263 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 164 7.4E-46 T 12-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Alide_1974 66f7bd14eb0ee2cfd150b860a3631ffd 263 Gene3D G3DSA:3.30.465.10 53 166 3.5E-35 T 12-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Alide_1974 66f7bd14eb0ee2cfd150b860a3631ffd 263 SUPERFAMILY SSF55447 168 262 1.05E-17 T 12-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily Alide_1974 66f7bd14eb0ee2cfd150b860a3631ffd 263 Gene3D G3DSA:3.30.390.50 168 263 6.3E-10 T 12-10-2018 Alide_1974 66f7bd14eb0ee2cfd150b860a3631ffd 263 Gene3D G3DSA:3.30.43.10 1 49 1.4E-13 T 12-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Alide_1974 66f7bd14eb0ee2cfd150b860a3631ffd 263 SUPERFAMILY SSF56176 1 165 4.91E-49 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_3456 18eb2d4cf8f6733ddaeb111633f3a354 388 Gene3D G3DSA:3.30.390.10 1 127 2.6E-68 T 12-10-2018 IPR029017 Enolase-like, N-terminal Alide_3456 18eb2d4cf8f6733ddaeb111633f3a354 388 Pfam PF13378 Enolase C-terminal domain-like 166 376 2.4E-39 T 12-10-2018 IPR029065 Enolase C-terminal domain-like Alide_3456 18eb2d4cf8f6733ddaeb111633f3a354 388 SUPERFAMILY SSF51604 123 383 2.12E-54 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_3456 18eb2d4cf8f6733ddaeb111633f3a354 388 SMART SM00922 162 259 1.1E-15 T 12-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Alide_3456 18eb2d4cf8f6733ddaeb111633f3a354 388 Gene3D G3DSA:3.20.20.120 128 388 9.2E-67 T 12-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Alide_3456 18eb2d4cf8f6733ddaeb111633f3a354 388 SUPERFAMILY SSF54826 1 138 4.98E-29 T 12-10-2018 Alide_3656 940ad01261b29023efe2d6ae9728529f 265 Pfam PF01578 Cytochrome C assembly protein 46 259 2.1E-27 T 12-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 21 181 3.0E-28 T 12-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 SUPERFAMILY SSF54814 193 313 1.57E-38 T 12-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 91 109 2.2E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 23 43 2.2E-7 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 Gene3D G3DSA:3.40.50.300 16 195 4.1E-44 T 12-10-2018 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 Pfam PF01926 50S ribosome-binding GTPase 23 136 5.1E-22 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 Pfam PF07650 KH domain 220 300 2.2E-18 T 12-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 TIGRFAM TIGR00436 era: GTP-binding protein Era 22 295 1.3E-79 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 Gene3D G3DSA:3.30.300.20 197 313 3.5E-40 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 Hamap MF_00367 GTPase Era [era]. 18 312 33.73 T 12-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3172 2f6e286a62515decc34e0ace10cd9c06 313 SUPERFAMILY SSF52540 23 217 1.84E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4475 a2cee522aafe19e51f558edb616e9d76 103 PIRSF PIRSF017854 1 89 5.7E-33 T 12-10-2018 IPR016704 Conjugal transfer, TrbD Alide_4475 a2cee522aafe19e51f558edb616e9d76 103 ProDom PD012561 TRBD PLASMID CONJUGAL TRANSFER PRECURSOR SIGNAL MATING FORMATION PROBABLE PAIR 13 93 1.0E-41 T 12-10-2018 Alide_4475 a2cee522aafe19e51f558edb616e9d76 103 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 6 85 1.8E-17 T 12-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB Alide_2907 81af749998ebbb1b9e0cf914b1cbd517 287 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 274 6.3E-48 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_4168 61640b09fb1bed9e278846028eaa53b1 258 Pfam PF12804 MobA-like NTP transferase domain 13 76 1.9E-12 T 12-10-2018 IPR025877 MobA-like NTP transferase Alide_4168 61640b09fb1bed9e278846028eaa53b1 258 Gene3D G3DSA:3.90.550.10 12 256 2.9E-41 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_4168 61640b09fb1bed9e278846028eaa53b1 258 SUPERFAMILY SSF53448 7 252 1.49E-43 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3413 bcf74ecd685b3a537ff184e70da83d65 383 PIRSF PIRSF000138 3 382 3.6E-118 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Alide_3413 bcf74ecd685b3a537ff184e70da83d65 383 SUPERFAMILY SSF51395 10 379 7.94E-89 T 12-10-2018 Alide_3413 bcf74ecd685b3a537ff184e70da83d65 383 Gene3D G3DSA:3.20.20.70 8 383 9.9E-123 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3413 bcf74ecd685b3a537ff184e70da83d65 383 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 277 283 - T 12-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Alide_3413 bcf74ecd685b3a537ff184e70da83d65 383 Pfam PF01070 FMN-dependent dehydrogenase 16 380 4.3E-124 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 Alide_0453 9524706d132360a99e1596fdcc8ae7a4 426 Pfam PF00529 HlyD membrane-fusion protein of T1SS 54 376 1.9E-9 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_0453 9524706d132360a99e1596fdcc8ae7a4 426 Gene3D G3DSA:2.40.420.20 321 383 1.8E-105 T 12-10-2018 Alide_0453 9524706d132360a99e1596fdcc8ae7a4 426 Gene3D G3DSA:2.40.50.100 80 224 1.8E-105 T 12-10-2018 Alide_0453 9524706d132360a99e1596fdcc8ae7a4 426 Gene3D G3DSA:1.10.287.470 115 188 1.8E-105 T 12-10-2018 Alide_0453 9524706d132360a99e1596fdcc8ae7a4 426 SUPERFAMILY SSF111369 69 316 7.72E-81 T 12-10-2018 Alide_0453 9524706d132360a99e1596fdcc8ae7a4 426 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 77 310 3.5E-10 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_0453 9524706d132360a99e1596fdcc8ae7a4 426 Gene3D G3DSA:2.40.30.170 70 320 1.8E-105 T 12-10-2018 Alide_0453 9524706d132360a99e1596fdcc8ae7a4 426 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 56 383 8.9E-81 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_0102 cd38c6fb81dc3ab88aa5f18416a8a6c0 312 Gene3D G3DSA:3.40.190.290 96 296 4.5E-63 T 12-10-2018 Alide_0102 cd38c6fb81dc3ab88aa5f18416a8a6c0 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.6E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0102 cd38c6fb81dc3ab88aa5f18416a8a6c0 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.6E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0102 cd38c6fb81dc3ab88aa5f18416a8a6c0 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.6E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0102 cd38c6fb81dc3ab88aa5f18416a8a6c0 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 1.6E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0102 cd38c6fb81dc3ab88aa5f18416a8a6c0 312 SUPERFAMILY SSF46785 11 116 1.17E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0102 cd38c6fb81dc3ab88aa5f18416a8a6c0 312 Gene3D G3DSA:1.10.10.10 7 93 4.8E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0102 cd38c6fb81dc3ab88aa5f18416a8a6c0 312 Pfam PF03466 LysR substrate binding domain 93 295 2.9E-37 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0102 cd38c6fb81dc3ab88aa5f18416a8a6c0 312 SUPERFAMILY SSF53850 96 300 6.7E-42 T 12-10-2018 Alide_3151 5b4f5a90488c4018ead718ba6e2d7fa9 211 SUPERFAMILY SSF88697 9 205 9.19E-48 T 12-10-2018 IPR015947 PUA-like superfamily Alide_3151 5b4f5a90488c4018ead718ba6e2d7fa9 211 Gene3D G3DSA:1.10.4060.10 122 211 1.5E-30 T 12-10-2018 Alide_3151 5b4f5a90488c4018ead718ba6e2d7fa9 211 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 206 1.0E-22 T 12-10-2018 IPR003111 Lon, substrate-binding domain Alide_3151 5b4f5a90488c4018ead718ba6e2d7fa9 211 Gene3D G3DSA:2.30.130.40 7 121 2.6E-38 T 12-10-2018 Alide_3151 5b4f5a90488c4018ead718ba6e2d7fa9 211 SMART SM00464 9 206 8.2E-10 T 12-10-2018 IPR003111 Lon, substrate-binding domain Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 Gene3D G3DSA:3.40.1390.10 3 100 2.6E-15 T 12-10-2018 Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 SUPERFAMILY SSF63418 16 99 8.89E-17 T 12-10-2018 IPR035911 MurE/MurF, N-terminal Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 Gene3D G3DSA:3.40.1190.10 101 342 5.9E-69 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 SUPERFAMILY SSF53623 101 337 2.63E-67 T 12-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 Pfam PF01225 Mur ligase family, catalytic domain 25 69 4.7E-6 T 12-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 494 30.536 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 Pfam PF08245 Mur ligase middle domain 110 317 9.9E-41 T 12-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 SUPERFAMILY SSF53244 339 496 2.22E-47 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 428 1.7E-22 T 12-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 24 494 6.6E-133 T 12-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Alide_3711 427af578a17a5dbe44c6df7a2b3247a1 501 Gene3D G3DSA:3.90.190.20 349 500 5.0E-54 T 12-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Alide_1302 22e4d91c85f15457d241373ed8120177 254 Gene3D G3DSA:3.90.226.10 1 254 8.0E-69 T 12-10-2018 Alide_1302 22e4d91c85f15457d241373ed8120177 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 254 3.4E-51 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_1302 22e4d91c85f15457d241373ed8120177 254 SUPERFAMILY SSF52096 2 254 1.24E-69 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 SUPERFAMILY SSF56420 2 165 7.07E-62 T 12-10-2018 IPR036821 Peptide deformylase superfamily Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 Pfam PF01327 Polypeptide deformylase 4 153 5.4E-51 T 12-10-2018 IPR023635 Peptide deformylase Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 Hamap MF_00163 Peptide deformylase [def]. 2 163 30.562 T 12-10-2018 IPR023635 Peptide deformylase Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 Gene3D G3DSA:3.90.45.10 1 168 6.6E-62 T 12-10-2018 IPR036821 Peptide deformylase superfamily Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 160 3.5E-54 T 12-10-2018 IPR023635 Peptide deformylase Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 PRINTS PR01576 Peptide deformylase signature 121 150 3.5E-35 T 12-10-2018 IPR023635 Peptide deformylase Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 PRINTS PR01576 Peptide deformylase signature 33 62 3.5E-35 T 12-10-2018 IPR023635 Peptide deformylase Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 PRINTS PR01576 Peptide deformylase signature 90 101 3.5E-35 T 12-10-2018 IPR023635 Peptide deformylase Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 PRINTS PR01576 Peptide deformylase signature 102 120 3.5E-35 T 12-10-2018 IPR023635 Peptide deformylase Alide_4270 0847c4abc09b8d096e9e7d28c0d30f50 171 PIRSF PIRSF004749 1 171 8.5E-55 T 12-10-2018 IPR023635 Peptide deformylase Alide_0503 4ced9f6df65458b300625deac53bc73f 811 Pfam PF02867 Ribonucleotide reductase, barrel domain 89 585 7.1E-136 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_0503 4ced9f6df65458b300625deac53bc73f 811 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 21 591 3.9E-175 T 12-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Alide_0503 4ced9f6df65458b300625deac53bc73f 811 SUPERFAMILY SSF51998 10 610 2.29E-171 T 12-10-2018 Alide_0503 4ced9f6df65458b300625deac53bc73f 811 PRINTS PR01183 Ribonucleotide reductase large chain signature 171 190 3.0E-24 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_0503 4ced9f6df65458b300625deac53bc73f 811 PRINTS PR01183 Ribonucleotide reductase large chain signature 331 354 3.0E-24 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_0503 4ced9f6df65458b300625deac53bc73f 811 PRINTS PR01183 Ribonucleotide reductase large chain signature 369 391 3.0E-24 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_0503 4ced9f6df65458b300625deac53bc73f 811 PRINTS PR01183 Ribonucleotide reductase large chain signature 453 480 3.0E-24 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_0503 4ced9f6df65458b300625deac53bc73f 811 PRINTS PR01183 Ribonucleotide reductase large chain signature 397 420 3.0E-24 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_0503 4ced9f6df65458b300625deac53bc73f 811 Gene3D G3DSA:3.20.70.20 4 600 1.1E-186 T 12-10-2018 Alide_1191 1183303e1ea1308ba6e7b24808e4ecab 200 Gene3D G3DSA:3.40.470.10 5 199 8.8E-66 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_1191 1183303e1ea1308ba6e7b24808e4ecab 200 SMART SM00986 33 189 3.4E-28 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_1191 1183303e1ea1308ba6e7b24808e4ecab 200 Pfam PF03167 Uracil DNA glycosylase superfamily 37 187 2.5E-21 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_1191 1183303e1ea1308ba6e7b24808e4ecab 200 SUPERFAMILY SSF52141 9 195 5.23E-51 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_1191 1183303e1ea1308ba6e7b24808e4ecab 200 SMART SM00987 33 189 3.4E-28 T 12-10-2018 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 154 165 - T 12-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 423 443 8.0E-43 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 638 667 8.0E-43 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 153 166 8.0E-43 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 771 797 8.0E-43 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 272 287 8.0E-43 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 Pfam PF00311 Phosphoenolpyruvate carboxylase 151 947 5.0E-286 T 12-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 SUPERFAMILY SSF51621 26 947 1.11E-290 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 591 603 - T 12-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 Gene3D G3DSA:1.20.1440.90 300 426 4.8E-11 T 12-10-2018 Alide_2810 b3d1b9ef21d17402ed2a7c926fb046b3 947 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 17 947 19.341 T 12-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 Alide_3858 8827bb07c550ce4bcce1d877911b7503 103 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 24 103 1.2E-18 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Alide_3858 8827bb07c550ce4bcce1d877911b7503 103 Pfam PF02049 Flagellar hook-basal body complex protein FliE 20 103 2.0E-25 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Alide_3858 8827bb07c550ce4bcce1d877911b7503 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 67 83 1.3E-10 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Alide_3858 8827bb07c550ce4bcce1d877911b7503 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 32 48 1.3E-10 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Alide_3858 8827bb07c550ce4bcce1d877911b7503 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 88 101 1.3E-10 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Alide_3858 8827bb07c550ce4bcce1d877911b7503 103 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 103 15.099 T 12-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Alide_2517 d3de870f4bf2130da15b1c695e97507e 339 SUPERFAMILY SSF103481 227 328 4.45E-11 T 12-10-2018 Alide_2517 d3de870f4bf2130da15b1c695e97507e 339 Pfam PF00892 EamA-like transporter family 188 324 1.2E-14 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_2517 d3de870f4bf2130da15b1c695e97507e 339 Pfam PF00892 EamA-like transporter family 31 162 1.2E-18 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_2517 d3de870f4bf2130da15b1c695e97507e 339 SUPERFAMILY SSF103481 65 167 1.09E-15 T 12-10-2018 Alide_3611 3c25a4e15cab804535b46874fd1c7f71 285 Gene3D G3DSA:3.40.30.10 52 210 1.8E-33 T 12-10-2018 Alide_3611 3c25a4e15cab804535b46874fd1c7f71 285 Pfam PF02630 SCO1/SenC 56 148 1.9E-9 T 12-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3611 3c25a4e15cab804535b46874fd1c7f71 285 SUPERFAMILY SSF52833 51 209 6.65E-28 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2956 411e8ac15247dd1e9642ae3570f41d7e 452 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 6 366 1.9E-111 T 12-10-2018 IPR010839 Acyclic terpene utilisation Alide_3998 bd35b7cd536468549f0ae9c65a75d5e8 557 SUPERFAMILY SSF110849 37 140 8.89E-10 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Alide_3998 bd35b7cd536468549f0ae9c65a75d5e8 557 TIGRFAM TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein 28 290 2.4E-119 T 12-10-2018 IPR022304 Integrating conjugative element, PFGI-1, ParB Alide_0398 8e9acc35606c608c114706e4442a0c25 391 Pfam PF01544 CorA-like Mg2+ transporter protein 33 381 7.4E-40 T 12-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Alide_0398 8e9acc35606c608c114706e4442a0c25 391 SUPERFAMILY SSF144083 320 383 3.14E-20 T 12-10-2018 Alide_0398 8e9acc35606c608c114706e4442a0c25 391 Gene3D G3DSA:1.20.58.340 189 326 3.2E-9 T 12-10-2018 Alide_0398 8e9acc35606c608c114706e4442a0c25 391 Gene3D G3DSA:1.20.58.340 328 385 4.2E-20 T 12-10-2018 Alide_0398 8e9acc35606c608c114706e4442a0c25 391 SUPERFAMILY SSF143865 22 319 5.36E-14 T 12-10-2018 Alide_1012 1a9dd3b6e9abebb53f5ab4080917b612 205 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 2 192 8.2E-47 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 Alide_1012 1a9dd3b6e9abebb53f5ab4080917b612 205 Hamap MF_01405 dITP/XTP pyrophosphatase. 1 196 41.763 T 12-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 Alide_1012 1a9dd3b6e9abebb53f5ab4080917b612 205 Gene3D G3DSA:3.90.950.10 1 199 1.2E-63 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Alide_1012 1a9dd3b6e9abebb53f5ab4080917b612 205 SUPERFAMILY SSF52972 1 195 8.63E-61 T 12-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Alide_1012 1a9dd3b6e9abebb53f5ab4080917b612 205 Pfam PF01725 Ham1 family 3 192 1.0E-48 T 12-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 Alide_1373 3241fd2371a7997161f5e4f12ec839f0 350 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 20 335 1.7E-112 T 12-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 Alide_1373 3241fd2371a7997161f5e4f12ec839f0 350 Pfam PF00962 Adenosine/AMP deaminase 20 336 1.1E-68 T 12-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 Alide_1373 3241fd2371a7997161f5e4f12ec839f0 350 Gene3D G3DSA:3.20.20.140 13 347 3.3E-103 T 12-10-2018 Alide_1373 3241fd2371a7997161f5e4f12ec839f0 350 SUPERFAMILY SSF51556 16 342 1.56E-83 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_1373 3241fd2371a7997161f5e4f12ec839f0 350 Hamap MF_01962 Adenine deaminase. 15 328 84.072 T 12-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 Alide_1203 c0568e1228d908956841b48ffed4b84e 84 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 22.115 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1203 c0568e1228d908956841b48ffed4b84e 84 SUPERFAMILY SSF54565 1 77 5.1E-27 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1203 c0568e1228d908956841b48ffed4b84e 84 Pfam PF00886 Ribosomal protein S16 8 68 5.6E-22 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1203 c0568e1228d908956841b48ffed4b84e 84 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 3.1E-25 T 12-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1203 c0568e1228d908956841b48ffed4b84e 84 Gene3D G3DSA:3.30.1320.10 1 84 1.7E-28 T 12-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_2541 e58c1f2b6016e9bbe394c0755d85cff3 248 SMART SM00967 6 82 2.9E-14 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Alide_2541 e58c1f2b6016e9bbe394c0755d85cff3 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 6 78 6.0E-14 T 12-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Alide_2541 e58c1f2b6016e9bbe394c0755d85cff3 248 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 4 248 42.974 T 12-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB Alide_2541 e58c1f2b6016e9bbe394c0755d85cff3 248 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 6 247 1.6E-73 T 12-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 Alide_2541 e58c1f2b6016e9bbe394c0755d85cff3 248 Gene3D G3DSA:3.30.1330.30 1 78 1.3E-15 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like Alide_2541 e58c1f2b6016e9bbe394c0755d85cff3 248 SUPERFAMILY SSF55315 2 78 7.42E-16 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like Alide_2541 e58c1f2b6016e9bbe394c0755d85cff3 248 Gene3D G3DSA:3.40.1280.10 83 248 1.9E-59 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Alide_2541 e58c1f2b6016e9bbe394c0755d85cff3 248 SUPERFAMILY SSF75217 97 248 1.96E-48 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases Alide_2541 e58c1f2b6016e9bbe394c0755d85cff3 248 Pfam PF00588 SpoU rRNA Methylase family 101 241 1.9E-39 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Alide_1048 3341308381ae59f108a2b06682c8d96c 202 SUPERFAMILY SSF143243 11 185 3.01E-57 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1048 3341308381ae59f108a2b06682c8d96c 202 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 35 164 1.5E-44 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1048 3341308381ae59f108a2b06682c8d96c 202 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 90 151 7.0E-27 T 12-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1048 3341308381ae59f108a2b06682c8d96c 202 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 35 162 3.8E-42 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1048 3341308381ae59f108a2b06682c8d96c 202 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 11 171 34.624 T 12-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1048 3341308381ae59f108a2b06682c8d96c 202 Gene3D G3DSA:3.30.460.80 3 143 1.6E-43 T 12-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1048 3341308381ae59f108a2b06682c8d96c 202 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 124 145 - T 12-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_2265 56c4e42efd0d080da652884c1f497c74 328 Gene3D G3DSA:3.40.190.10 130 253 3.4E-95 T 12-10-2018 Alide_2265 56c4e42efd0d080da652884c1f497c74 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 324 3.7E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2265 56c4e42efd0d080da652884c1f497c74 328 Gene3D G3DSA:3.40.190.150 33 317 3.4E-95 T 12-10-2018 Alide_2265 56c4e42efd0d080da652884c1f497c74 328 PIRSF PIRSF017082 1 327 1.7E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2265 56c4e42efd0d080da652884c1f497c74 328 SUPERFAMILY SSF53850 110 291 2.96E-9 T 12-10-2018 Alide_0546 4c55eea8342b57a38f6cf90a7a0059ab 643 Gene3D G3DSA:3.40.50.12780 1 316 3.9E-46 T 12-10-2018 Alide_0546 4c55eea8342b57a38f6cf90a7a0059ab 643 Gene3D G3DSA:3.40.50.12780 324 465 2.7E-33 T 12-10-2018 Alide_0546 4c55eea8342b57a38f6cf90a7a0059ab 643 ProSitePatterns PS00455 Putative AMP-binding domain signature. 184 195 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_0546 4c55eea8342b57a38f6cf90a7a0059ab 643 SUPERFAMILY SSF56801 3 603 5.76E-106 T 12-10-2018 Alide_0546 4c55eea8342b57a38f6cf90a7a0059ab 643 Pfam PF00501 AMP-binding enzyme 11 469 1.0E-86 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_1127 eaf43921c0ec7082835239bcbd8aae69 222 SUPERFAMILY SSF158710 45 202 3.14E-42 T 12-10-2018 IPR023153 PSPTO4464-like domain superfamily Alide_1127 eaf43921c0ec7082835239bcbd8aae69 222 PIRSF PIRSF016183 23 207 5.0E-50 T 12-10-2018 IPR006839 Ribosome-associated, YjgA Alide_1127 eaf43921c0ec7082835239bcbd8aae69 222 Pfam PF04751 Protein of unknown function (DUF615) 37 199 9.8E-50 T 12-10-2018 IPR006839 Ribosome-associated, YjgA Alide_1127 eaf43921c0ec7082835239bcbd8aae69 222 Gene3D G3DSA:1.10.60.30 125 208 1.5E-18 T 12-10-2018 Alide_1127 eaf43921c0ec7082835239bcbd8aae69 222 Gene3D G3DSA:1.10.60.30 45 120 7.4E-25 T 12-10-2018 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 68 513 7.6E-134 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 290 344 - T 12-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 13 656 0.0 T 12-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 358 379 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 208 226 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 334 349 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 59 84 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 237 256 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 421 440 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 109 132 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 288 309 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 136 160 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 471 492 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 PRINTS PR01165 Cytochrome c oxidase subunit I signature 393 411 9.3E-87 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 Gene3D G3DSA:1.20.210.10 42 576 4.2E-184 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1994 cfc6ccdb174dc6128d6bc6df26308a46 668 SUPERFAMILY SSF81442 55 569 8.9E-171 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0995 16e212193c963981d669d0efdc14fb53 300 Gene3D G3DSA:1.10.10.10 1 93 7.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0995 16e212193c963981d669d0efdc14fb53 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.1E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0995 16e212193c963981d669d0efdc14fb53 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.5E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0995 16e212193c963981d669d0efdc14fb53 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.5E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0995 16e212193c963981d669d0efdc14fb53 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.5E-8 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0995 16e212193c963981d669d0efdc14fb53 300 SUPERFAMILY SSF53850 87 276 2.35E-31 T 12-10-2018 Alide_0995 16e212193c963981d669d0efdc14fb53 300 Gene3D G3DSA:3.40.190.10 95 271 3.0E-23 T 12-10-2018 Alide_0995 16e212193c963981d669d0efdc14fb53 300 SUPERFAMILY SSF46785 1 110 1.47E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0995 16e212193c963981d669d0efdc14fb53 300 Pfam PF03466 LysR substrate binding domain 87 278 3.4E-32 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0995 16e212193c963981d669d0efdc14fb53 300 Gene3D G3DSA:3.40.190.10 163 265 3.0E-23 T 12-10-2018 Alide_0593 ae494881dc135a56d6cd6a495c366182 137 SUPERFAMILY SSF55620 21 132 2.95E-23 T 12-10-2018 Alide_0593 ae494881dc135a56d6cd6a495c366182 137 Pfam PF02152 Dihydroneopterin aldolase 23 130 3.0E-21 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Alide_0593 ae494881dc135a56d6cd6a495c366182 137 Gene3D G3DSA:3.30.1130.10 2 136 6.7E-39 T 12-10-2018 Alide_0593 ae494881dc135a56d6cd6a495c366182 137 SMART SM00905 22 133 6.9E-23 T 12-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Alide_4493 5759c730fc8681021fb25cbfee9205c4 572 SUPERFAMILY SSF53098 183 380 2.88E-20 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_4493 5759c730fc8681021fb25cbfee9205c4 572 Pfam PF00665 Integrase core domain 186 324 3.4E-24 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_4493 5759c730fc8681021fb25cbfee9205c4 572 Pfam PF13518 Helix-turn-helix domain 38 85 8.9E-9 T 12-10-2018 Alide_4493 5759c730fc8681021fb25cbfee9205c4 572 Gene3D G3DSA:3.30.420.10 185 400 7.3E-31 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_4493 5759c730fc8681021fb25cbfee9205c4 572 Pfam PF09299 Mu transposase, C-terminal 405 467 2.4E-12 T 12-10-2018 IPR015378 Transposase-like, Mu, C-terminal Alide_0912 fbba8f3803db52ccd38af1c00601a9ee 141 PRINTS PR00502 NUDIX hydrolase family signature 49 64 2.0E-9 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Alide_0912 fbba8f3803db52ccd38af1c00601a9ee 141 PRINTS PR00502 NUDIX hydrolase family signature 35 49 2.0E-9 T 12-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Alide_0912 fbba8f3803db52ccd38af1c00601a9ee 141 Pfam PF00293 NUDIX domain 8 98 9.2E-17 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Alide_0912 fbba8f3803db52ccd38af1c00601a9ee 141 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Alide_0912 fbba8f3803db52ccd38af1c00601a9ee 141 Gene3D G3DSA:3.90.79.10 3 128 3.8E-29 T 12-10-2018 Alide_0912 fbba8f3803db52ccd38af1c00601a9ee 141 SUPERFAMILY SSF55811 2 109 1.06E-30 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_0737 e970f3680b1700a391c2d5ee7655e6a3 520 Pfam PF13807 G-rich domain on putative tyrosine kinase 369 449 8.3E-11 T 12-10-2018 IPR032807 Tyrosine kinase, G-rich domain Alide_0737 e970f3680b1700a391c2d5ee7655e6a3 520 TIGRFAM TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily 7 509 1.6E-157 T 12-10-2018 IPR014345 PEP-CTERM locus polysaccharide chain length determinant Alide_2008 2f5331aa54e2c9e6afded5cd60165f93 509 Gene3D G3DSA:3.30.590.20 14 508 9.9E-172 T 12-10-2018 Alide_2008 2f5331aa54e2c9e6afded5cd60165f93 509 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 509 196.074 T 12-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Alide_2008 2f5331aa54e2c9e6afded5cd60165f93 509 SUPERFAMILY SSF55931 11 498 1.05E-171 T 12-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Alide_2008 2f5331aa54e2c9e6afded5cd60165f93 509 Pfam PF04262 Glutamate-cysteine ligase 14 363 7.9E-134 T 12-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Alide_2008 2f5331aa54e2c9e6afded5cd60165f93 509 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 14 500 6.1E-150 T 12-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 Alide_1150 75336936a5d20e20147809fa153bbf28 343 Gene3D G3DSA:3.40.50.300 6 205 1.6E-48 T 12-10-2018 Alide_1150 75336936a5d20e20147809fa153bbf28 343 PIRSF PIRSF002849 1 326 1.2E-127 T 12-10-2018 Alide_1150 75336936a5d20e20147809fa153bbf28 343 Gene3D G3DSA:1.10.8.300 206 321 2.1E-33 T 12-10-2018 Alide_1150 75336936a5d20e20147809fa153bbf28 343 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 45 175 2.4E-63 T 12-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Alide_1150 75336936a5d20e20147809fa153bbf28 343 SUPERFAMILY SSF52540 9 299 2.72E-47 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3970 59b5c7c9779f595236ae2bbf49ce4c27 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.337 T 12-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid Alide_3970 59b5c7c9779f595236ae2bbf49ce4c27 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 6.1E-25 T 12-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_3970 59b5c7c9779f595236ae2bbf49ce4c27 101 Gene3D G3DSA:4.10.830.10 40 101 2.0E-22 T 12-10-2018 Alide_3970 59b5c7c9779f595236ae2bbf49ce4c27 101 SUPERFAMILY SSF57716 2 101 1.07E-34 T 12-10-2018 Alide_4410 597dd8a67831bcb6fcca1f07cddf068a 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 1.5E-29 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_4410 597dd8a67831bcb6fcca1f07cddf068a 302 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 22 69 5.5E-15 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Alide_4410 597dd8a67831bcb6fcca1f07cddf068a 302 Gene3D G3DSA:1.10.3720.10 88 295 2.3E-23 T 12-10-2018 IPR035906 MetI-like superfamily Alide_4410 597dd8a67831bcb6fcca1f07cddf068a 302 SUPERFAMILY SSF161098 93 283 2.35E-29 T 12-10-2018 IPR035906 MetI-like superfamily Alide_4145 9c97e20484e58da7efc6d05912bbccbe 519 Gene3D G3DSA:3.40.50.1820 37 280 2.5E-44 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4145 9c97e20484e58da7efc6d05912bbccbe 519 SUPERFAMILY SSF53474 97 440 6.85E-18 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4145 9c97e20484e58da7efc6d05912bbccbe 519 PIRSF PIRSF029171 354 482 6.9E-7 T 12-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 Alide_4145 9c97e20484e58da7efc6d05912bbccbe 519 PIRSF PIRSF029171 1 352 9.0E-36 T 12-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 Alide_2411 d239bda9b9903231e4dff8fa5d8a881e 132 Gene3D G3DSA:3.10.129.10 7 132 5.4E-30 T 12-10-2018 Alide_2411 d239bda9b9903231e4dff8fa5d8a881e 132 SUPERFAMILY SSF54637 12 126 9.05E-30 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2411 d239bda9b9903231e4dff8fa5d8a881e 132 Pfam PF01575 MaoC like domain 15 112 2.4E-21 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_0791 924c63efb45e2b7a8b6cf6f6c47383bd 466 SUPERFAMILY SSF52540 89 464 8.3E-102 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0791 924c63efb45e2b7a8b6cf6f6c47383bd 466 Pfam PF00437 Type II/IV secretion system protein 115 379 1.4E-88 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0791 924c63efb45e2b7a8b6cf6f6c47383bd 466 SMART SM00382 240 363 1.8E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0791 924c63efb45e2b7a8b6cf6f6c47383bd 466 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 307 321 - T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_0791 924c63efb45e2b7a8b6cf6f6c47383bd 466 Gene3D G3DSA:3.40.50.300 213 466 1.3E-106 T 12-10-2018 Alide_0791 924c63efb45e2b7a8b6cf6f6c47383bd 466 SUPERFAMILY SSF160246 3 65 7.32E-10 T 12-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily Alide_0791 924c63efb45e2b7a8b6cf6f6c47383bd 466 Gene3D G3DSA:3.30.450.90 77 212 8.3E-51 T 12-10-2018 Alide_0549 2fa5d47955a8667f7cc223b900ed2ab3 263 SMART SM00419 182 230 1.1E-5 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_0549 2fa5d47955a8667f7cc223b900ed2ab3 263 Gene3D G3DSA:2.60.120.10 17 161 1.7E-15 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_0549 2fa5d47955a8667f7cc223b900ed2ab3 263 Pfam PF00027 Cyclic nucleotide-binding domain 50 132 3.6E-12 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_0549 2fa5d47955a8667f7cc223b900ed2ab3 263 SUPERFAMILY SSF46785 164 236 9.69E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0549 2fa5d47955a8667f7cc223b900ed2ab3 263 Gene3D G3DSA:1.10.10.10 165 237 2.6E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0549 2fa5d47955a8667f7cc223b900ed2ab3 263 Pfam PF13545 Crp-like helix-turn-helix domain 167 235 4.2E-12 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_0549 2fa5d47955a8667f7cc223b900ed2ab3 263 SMART SM00100 28 149 1.1E-6 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_0549 2fa5d47955a8667f7cc223b900ed2ab3 263 SUPERFAMILY SSF51206 23 153 8.25E-23 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_0371 e7afd6a4f8ca53fc2e1c78a172adef44 232 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 232 31.449 T 12-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_0371 e7afd6a4f8ca53fc2e1c78a172adef44 232 Gene3D G3DSA:3.40.50.2020 12 230 1.1E-65 T 12-10-2018 Alide_0371 e7afd6a4f8ca53fc2e1c78a172adef44 232 SUPERFAMILY SSF53271 14 209 8.09E-42 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_0371 e7afd6a4f8ca53fc2e1c78a172adef44 232 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 21 200 1.2E-52 T 12-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Alide_0371 e7afd6a4f8ca53fc2e1c78a172adef44 232 Pfam PF00156 Phosphoribosyl transferase domain 51 171 3.2E-13 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Alide_1797 c51d2dd4119418a82946daadab9a2812 627 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 253 626 2.3E-62 T 12-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 Alide_1797 c51d2dd4119418a82946daadab9a2812 627 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 111 230 1.7E-29 T 12-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 Alide_1797 c51d2dd4119418a82946daadab9a2812 627 Gene3D G3DSA:3.50.50.60 252 626 2.6E-81 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1797 c51d2dd4119418a82946daadab9a2812 627 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 6 627 20.126 T 12-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 Alide_1797 c51d2dd4119418a82946daadab9a2812 627 SUPERFAMILY SSF51971 249 611 1.41E-25 T 12-10-2018 Alide_1797 c51d2dd4119418a82946daadab9a2812 627 SUPERFAMILY SSF53335 20 223 4.76E-5 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_1797 c51d2dd4119418a82946daadab9a2812 627 Gene3D G3DSA:3.40.50.150 8 239 1.2E-77 T 12-10-2018 Alide_1797 c51d2dd4119418a82946daadab9a2812 627 Gene3D G3DSA:3.30.9.10 334 564 2.6E-81 T 12-10-2018 Alide_1797 c51d2dd4119418a82946daadab9a2812 627 Pfam PF01266 FAD dependent oxidoreductase 253 606 8.8E-33 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_1810 05fc209fb38fd56570966abd6d1ea13b 250 SUPERFAMILY SSF52540 5 246 1.18E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1810 05fc209fb38fd56570966abd6d1ea13b 250 Gene3D G3DSA:3.40.50.300 1 248 3.5E-54 T 12-10-2018 Alide_1810 05fc209fb38fd56570966abd6d1ea13b 250 Pfam PF00005 ABC transporter 22 176 5.1E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1810 05fc209fb38fd56570966abd6d1ea13b 250 SMART SM00382 30 224 1.1E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1810 05fc209fb38fd56570966abd6d1ea13b 250 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 225 246 2.4E-8 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_3846 5e2a359d7bace930a4dc8d37a42a69bd 89 PIRSF PIRSF004669 1 89 7.9E-32 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Alide_3846 5e2a359d7bace930a4dc8d37a42a69bd 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 5.8E-29 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Alide_3846 5e2a359d7bace930a4dc8d37a42a69bd 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 8.4E-21 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Alide_3846 5e2a359d7bace930a4dc8d37a42a69bd 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 8.4E-21 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Alide_3846 5e2a359d7bace930a4dc8d37a42a69bd 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 8.4E-21 T 12-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Alide_3846 5e2a359d7bace930a4dc8d37a42a69bd 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 1.3E-29 T 12-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 Alide_2602 8d507441b9e50b8345ba14b4b7b9810a 323 PIRSF PIRSF028757 13 318 8.3E-58 T 12-10-2018 IPR003507 Peptidase family S66 Alide_2602 8d507441b9e50b8345ba14b4b7b9810a 323 SUPERFAMILY SSF141986 192 312 4.18E-39 T 12-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily Alide_2602 8d507441b9e50b8345ba14b4b7b9810a 323 Pfam PF02016 LD-carboxypeptidase 17 308 9.5E-65 T 12-10-2018 IPR003507 Peptidase family S66 Alide_2602 8d507441b9e50b8345ba14b4b7b9810a 323 Gene3D G3DSA:3.40.50.10740 5 154 1.2E-25 T 12-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal Alide_2602 8d507441b9e50b8345ba14b4b7b9810a 323 SUPERFAMILY SSF52317 15 167 4.39E-26 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_2602 8d507441b9e50b8345ba14b4b7b9810a 323 Gene3D G3DSA:3.50.30.60 189 314 1.3E-41 T 12-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily Alide_2842 12fd37536005f0486a8d9f9be414badc 187 PRINTS PR01438 Universal stress protein signature 106 118 3.8E-17 T 12-10-2018 IPR006015 Universal stress protein A Alide_2842 12fd37536005f0486a8d9f9be414badc 187 PRINTS PR01438 Universal stress protein signature 124 146 3.8E-17 T 12-10-2018 IPR006015 Universal stress protein A Alide_2842 12fd37536005f0486a8d9f9be414badc 187 PRINTS PR01438 Universal stress protein signature 2 20 3.8E-17 T 12-10-2018 IPR006015 Universal stress protein A Alide_2842 12fd37536005f0486a8d9f9be414badc 187 Pfam PF00582 Universal stress protein family 1 146 1.6E-28 T 12-10-2018 IPR006016 UspA Alide_2842 12fd37536005f0486a8d9f9be414badc 187 Gene3D G3DSA:3.40.50.620 1 148 7.9E-37 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2842 12fd37536005f0486a8d9f9be414badc 187 SUPERFAMILY SSF52402 1 146 6.2E-36 T 12-10-2018 Alide_1504 cba282c721b9faf3e041afa60fc6fbde 168 Pfam PF08882 Acetone carboxylase gamma subunit 46 159 9.1E-57 T 12-10-2018 IPR016750 Acetophenone carboxylase beta subunit/Acetone carboxylase gamma subunit Alide_1504 cba282c721b9faf3e041afa60fc6fbde 168 PIRSF PIRSF019217 1 168 2.9E-87 T 12-10-2018 IPR016750 Acetophenone carboxylase beta subunit/Acetone carboxylase gamma subunit Alide_1153 5b156587b6c902e24558e2ba81204496 102 SUPERFAMILY SSF46785 13 101 1.55E-24 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1153 5b156587b6c902e24558e2ba81204496 102 SMART SM00418 19 98 7.2E-24 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_1153 5b156587b6c902e24558e2ba81204496 102 Gene3D G3DSA:1.10.10.10 8 102 5.6E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1153 5b156587b6c902e24558e2ba81204496 102 Pfam PF01022 Bacterial regulatory protein, arsR family 26 72 1.9E-14 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_1153 5b156587b6c902e24558e2ba81204496 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 7.6E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_1153 5b156587b6c902e24558e2ba81204496 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 7.6E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_1153 5b156587b6c902e24558e2ba81204496 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 7.6E-11 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_3718 eac5f8896f0baa2a5ec67cb4d1b31656 578 Pfam PF13466 STAS domain 502 567 3.1E-9 T 12-10-2018 IPR002645 STAS domain Alide_1458 b0addb7819cd25d644949038567f25b8 327 Pfam PF02470 MlaD protein 52 115 6.1E-7 T 12-10-2018 IPR003399 Mce/MlaD Alide_0108 c6b43b8edebb0de9ffa1d52f86c7739b 140 PRINTS PR01438 Universal stress protein signature 100 112 1.0E-9 T 12-10-2018 IPR006015 Universal stress protein A Alide_0108 c6b43b8edebb0de9ffa1d52f86c7739b 140 PRINTS PR01438 Universal stress protein signature 118 140 1.0E-9 T 12-10-2018 IPR006015 Universal stress protein A Alide_0108 c6b43b8edebb0de9ffa1d52f86c7739b 140 SUPERFAMILY SSF52402 2 140 1.05E-29 T 12-10-2018 Alide_0108 c6b43b8edebb0de9ffa1d52f86c7739b 140 Pfam PF00582 Universal stress protein family 2 140 1.2E-25 T 12-10-2018 IPR006016 UspA Alide_0108 c6b43b8edebb0de9ffa1d52f86c7739b 140 Gene3D G3DSA:3.40.50.620 1 140 1.3E-30 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1812 e4b9f0773abcd7c96c9ae3c01056accc 197 Pfam PF02627 Carboxymuconolactone decarboxylase family 46 128 1.1E-5 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_1812 e4b9f0773abcd7c96c9ae3c01056accc 197 SUPERFAMILY SSF69118 19 179 2.62E-31 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_1812 e4b9f0773abcd7c96c9ae3c01056accc 197 Gene3D G3DSA:1.20.1290.10 17 181 6.3E-25 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_2275 ec5c4dad3875b3f41524f0f3213544c2 438 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 2 418 1.1E-170 T 12-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase Alide_2275 ec5c4dad3875b3f41524f0f3213544c2 438 Gene3D G3DSA:3.40.50.1820 97 419 1.7E-6 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2275 ec5c4dad3875b3f41524f0f3213544c2 438 PIRSF PIRSF020818 1 429 4.3E-182 T 12-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase Alide_2275 ec5c4dad3875b3f41524f0f3213544c2 438 Pfam PF06850 PHB de-polymerase C-terminus 213 419 2.3E-87 T 12-10-2018 IPR009656 PHB de-polymerase, C-terminal Alide_2275 ec5c4dad3875b3f41524f0f3213544c2 438 SUPERFAMILY SSF53474 107 417 4.53E-30 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 SUPERFAMILY SSF46785 3 82 3.72E-22 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 Pfam PF03466 LysR substrate binding domain 91 311 1.5E-32 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 Gene3D G3DSA:3.40.190.10 104 307 1.5E-48 T 12-10-2018 Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 Gene3D G3DSA:3.40.190.10 168 281 1.5E-48 T 12-10-2018 Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.5E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 Gene3D G3DSA:1.10.10.10 6 90 9.4E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 SUPERFAMILY SSF53850 92 312 4.52E-31 T 12-10-2018 Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.2E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.2E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1422 b810526125eec5fad2e15a04628e8dc5 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.2E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1773 d9a30b49f2c2de5fd30119d6be1b7bca 270 Gene3D G3DSA:3.30.450.40 85 263 1.1E-50 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_1773 d9a30b49f2c2de5fd30119d6be1b7bca 270 Pfam PF01614 Bacterial transcriptional regulator 132 251 3.1E-30 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_1773 d9a30b49f2c2de5fd30119d6be1b7bca 270 Gene3D G3DSA:1.10.10.10 12 84 2.5E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1773 d9a30b49f2c2de5fd30119d6be1b7bca 270 SUPERFAMILY SSF55781 71 256 7.19E-44 T 12-10-2018 Alide_1773 d9a30b49f2c2de5fd30119d6be1b7bca 270 Pfam PF09339 IclR helix-turn-helix domain 17 64 1.2E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_1773 d9a30b49f2c2de5fd30119d6be1b7bca 270 SMART SM00346 14 103 5.6E-22 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_1773 d9a30b49f2c2de5fd30119d6be1b7bca 270 SUPERFAMILY SSF46785 14 85 4.04E-16 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 Gene3D G3DSA:3.40.50.1980 225 341 7.4E-106 T 12-10-2018 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 221 253 - T 12-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 25 419 1.1E-135 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 Gene3D G3DSA:3.40.50.1980 22 223 7.4E-106 T 12-10-2018 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 PIRSF PIRSF000099 3 423 5.0E-121 T 12-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 PRINTS PR00083 Histidinol dehydrogenase signature 25 49 5.4E-69 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 PRINTS PR00083 Histidinol dehydrogenase signature 192 217 5.4E-69 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 PRINTS PR00083 Histidinol dehydrogenase signature 100 127 5.4E-69 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 PRINTS PR00083 Histidinol dehydrogenase signature 221 242 5.4E-69 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 PRINTS PR00083 Histidinol dehydrogenase signature 162 188 5.4E-69 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 PRINTS PR00083 Histidinol dehydrogenase signature 312 337 5.4E-69 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 PRINTS PR00083 Histidinol dehydrogenase signature 243 262 5.4E-69 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 PRINTS PR00083 Histidinol dehydrogenase signature 353 371 5.4E-69 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 11 420 32.252 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 Pfam PF00815 Histidinol dehydrogenase 14 419 2.7E-138 T 12-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Alide_2313 7426b64c246395cbcda0331e2be6bcb5 439 SUPERFAMILY SSF53720 19 420 1.26E-68 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_4594 5434f527dab540343236224e52e092e1 142 Pfam PF01527 Transposase 13 62 3.8E-10 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_4594 5434f527dab540343236224e52e092e1 142 SUPERFAMILY SSF48295 12 62 5.75E-11 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Alide_1871 5434f527dab540343236224e52e092e1 142 Pfam PF01527 Transposase 13 62 3.8E-10 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1871 5434f527dab540343236224e52e092e1 142 SUPERFAMILY SSF48295 12 62 5.75E-11 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Alide_1522 5434f527dab540343236224e52e092e1 142 Pfam PF01527 Transposase 13 62 3.8E-10 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_1522 5434f527dab540343236224e52e092e1 142 SUPERFAMILY SSF48295 12 62 5.75E-11 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Alide_3776 5434f527dab540343236224e52e092e1 142 Pfam PF01527 Transposase 13 62 3.8E-10 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_3776 5434f527dab540343236224e52e092e1 142 SUPERFAMILY SSF48295 12 62 5.75E-11 T 12-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Alide_2284 1a003a3037ce2f8eacd850d8549fc83b 321 SUPERFAMILY SSF53850 81 285 7.97E-17 T 12-10-2018 Alide_2284 1a003a3037ce2f8eacd850d8549fc83b 321 Gene3D G3DSA:3.40.190.10 123 246 1.2E-103 T 12-10-2018 Alide_2284 1a003a3037ce2f8eacd850d8549fc83b 321 Gene3D G3DSA:3.40.190.150 26 310 1.2E-103 T 12-10-2018 Alide_2284 1a003a3037ce2f8eacd850d8549fc83b 321 PIRSF PIRSF017082 1 321 4.4E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2284 1a003a3037ce2f8eacd850d8549fc83b 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 316 8.0E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0767 bc8f83d300e1dbe9b58765282f5f219b 548 SUPERFAMILY SSF56801 9 539 8.24E-135 T 12-10-2018 Alide_0767 bc8f83d300e1dbe9b58765282f5f219b 548 Gene3D G3DSA:3.40.50.12780 15 439 8.2E-104 T 12-10-2018 Alide_0767 bc8f83d300e1dbe9b58765282f5f219b 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 186 197 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_0767 bc8f83d300e1dbe9b58765282f5f219b 548 Pfam PF00501 AMP-binding enzyme 25 446 3.5E-92 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0767 bc8f83d300e1dbe9b58765282f5f219b 548 Gene3D G3DSA:3.30.300.30 441 545 9.9E-23 T 12-10-2018 Alide_0767 bc8f83d300e1dbe9b58765282f5f219b 548 TIGRFAM TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated 18 540 5.6E-221 T 12-10-2018 IPR017529 Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated Alide_0767 bc8f83d300e1dbe9b58765282f5f219b 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 535 2.8E-11 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1583 3ac7d7b16ef99013a0b1ee00a0ea806c 236 Gene3D G3DSA:3.40.50.150 15 227 9.4E-49 T 12-10-2018 Alide_1583 3ac7d7b16ef99013a0b1ee00a0ea806c 236 SUPERFAMILY SSF53335 15 200 3.95E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_1583 3ac7d7b16ef99013a0b1ee00a0ea806c 236 SMART SM00650 85 229 0.0024 T 12-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 Alide_1583 3ac7d7b16ef99013a0b1ee00a0ea806c 236 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 22 201 4.0E-29 T 12-10-2018 Alide_2963 b41c26325ce8903266f1bce31eb692e2 158 Gene3D G3DSA:3.10.129.10 41 146 1.5E-16 T 12-10-2018 Alide_2963 b41c26325ce8903266f1bce31eb692e2 158 SUPERFAMILY SSF54637 43 145 7.88E-15 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0846 4e1c8f32dac81d785230fb65167ed163 372 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 20 355 2.1E-116 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Alide_0846 4e1c8f32dac81d785230fb65167ed163 372 Pfam PF01761 3-dehydroquinate synthase 74 335 1.7E-107 T 12-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Alide_0846 4e1c8f32dac81d785230fb65167ed163 372 SUPERFAMILY SSF56796 13 365 9.55E-115 T 12-10-2018 Alide_0846 4e1c8f32dac81d785230fb65167ed163 372 Gene3D G3DSA:3.40.50.1970 2 179 5.2E-64 T 12-10-2018 Alide_0846 4e1c8f32dac81d785230fb65167ed163 372 Gene3D G3DSA:1.20.1090.10 180 371 5.9E-64 T 12-10-2018 Alide_0846 4e1c8f32dac81d785230fb65167ed163 372 PIRSF PIRSF001455 11 370 9.2E-110 T 12-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Alide_0846 4e1c8f32dac81d785230fb65167ed163 372 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 8 370 70.571 T 12-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Alide_2948 92d46ae0eae0d846665eb2d60b27f76d 309 SUPERFAMILY SSF53850 98 305 4.62E-36 T 12-10-2018 Alide_2948 92d46ae0eae0d846665eb2d60b27f76d 309 Pfam PF03466 LysR substrate binding domain 98 301 1.3E-31 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2948 92d46ae0eae0d846665eb2d60b27f76d 309 Gene3D G3DSA:3.40.190.290 102 306 3.3E-35 T 12-10-2018 Alide_2948 92d46ae0eae0d846665eb2d60b27f76d 309 Gene3D G3DSA:1.10.10.10 12 101 4.3E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2948 92d46ae0eae0d846665eb2d60b27f76d 309 SUPERFAMILY SSF46785 13 98 2.52E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2948 92d46ae0eae0d846665eb2d60b27f76d 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 73 1.0E-12 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2745 01555b4142d0fdc3ab6927a86d213c19 559 Pfam PF07731 Multicopper oxidase 428 557 7.1E-24 T 12-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 Alide_2745 01555b4142d0fdc3ab6927a86d213c19 559 SUPERFAMILY SSF49503 187 375 1.04E-26 T 12-10-2018 IPR008972 Cupredoxin Alide_2745 01555b4142d0fdc3ab6927a86d213c19 559 ProSitePatterns PS00080 Multicopper oxidases signature 2. 540 551 - T 12-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 Alide_2745 01555b4142d0fdc3ab6927a86d213c19 559 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 7 33 1.1E-4 T 12-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Alide_2745 01555b4142d0fdc3ab6927a86d213c19 559 Gene3D G3DSA:2.60.40.420 39 186 7.1E-43 T 12-10-2018 IPR008972 Cupredoxin Alide_2745 01555b4142d0fdc3ab6927a86d213c19 559 Pfam PF07732 Multicopper oxidase 75 182 3.8E-29 T 12-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 Alide_2745 01555b4142d0fdc3ab6927a86d213c19 559 SUPERFAMILY SSF49503 50 184 1.99E-33 T 12-10-2018 IPR008972 Cupredoxin Alide_2745 01555b4142d0fdc3ab6927a86d213c19 559 Gene3D G3DSA:2.60.40.420 412 559 4.3E-43 T 12-10-2018 IPR008972 Cupredoxin Alide_2745 01555b4142d0fdc3ab6927a86d213c19 559 SUPERFAMILY SSF49503 433 558 1.15E-30 T 12-10-2018 IPR008972 Cupredoxin Alide_3066 e22d24f4333d72123438affc9b053fd9 351 Gene3D G3DSA:3.30.565.10 207 341 1.6E-15 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3066 e22d24f4333d72123438affc9b053fd9 351 SUPERFAMILY SSF55874 204 340 8.18E-14 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_3066 e22d24f4333d72123438affc9b053fd9 351 Pfam PF06580 Histidine kinase 148 227 2.3E-17 T 12-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Alide_2475 c31321caba91ef651605677ca5732220 294 Pfam PF05726 Pirin C-terminal cupin domain 188 290 2.0E-28 T 12-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 Alide_2475 c31321caba91ef651605677ca5732220 294 PIRSF PIRSF006232 6 294 3.0E-85 T 12-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 Alide_2475 c31321caba91ef651605677ca5732220 294 SUPERFAMILY SSF51182 14 292 1.03E-79 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_2475 c31321caba91ef651605677ca5732220 294 Pfam PF02678 Pirin 34 133 5.4E-32 T 12-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 Alide_2475 c31321caba91ef651605677ca5732220 294 Gene3D G3DSA:2.60.120.10 21 285 1.3E-81 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_2475 c31321caba91ef651605677ca5732220 294 Gene3D G3DSA:2.60.120.10 155 259 1.3E-81 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1366 4a4ea44a4d1ad82dd18b3d4c1fe257d0 388 Gene3D G3DSA:3.40.50.2300 158 374 1.3E-128 T 12-10-2018 Alide_1366 4a4ea44a4d1ad82dd18b3d4c1fe257d0 388 Gene3D G3DSA:3.40.50.2300 55 311 1.3E-128 T 12-10-2018 Alide_1366 4a4ea44a4d1ad82dd18b3d4c1fe257d0 388 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 55 322 1.4E-54 T 12-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Alide_1906 89c2d3973c8068b6c3e311a878ef2456 486 Pfam PF01381 Helix-turn-helix 10 62 7.0E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_1906 89c2d3973c8068b6c3e311a878ef2456 486 Gene3D G3DSA:1.10.260.40 2 70 2.5E-15 T 12-10-2018 Alide_1906 89c2d3973c8068b6c3e311a878ef2456 486 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 327 483 7.8E-73 T 12-10-2018 IPR018653 Domain of unknown function DUF2083,transcriptional regulator Alide_1906 89c2d3973c8068b6c3e311a878ef2456 486 SUPERFAMILY SSF47413 3 69 1.39E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_1906 89c2d3973c8068b6c3e311a878ef2456 486 PIRSF PIRSF019251 1 486 1.2E-208 T 12-10-2018 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 Alide_1906 89c2d3973c8068b6c3e311a878ef2456 486 Pfam PF06114 IrrE N-terminal-like domain 222 326 1.0E-16 T 12-10-2018 IPR010359 IrrE N-terminal-like domain Alide_1906 89c2d3973c8068b6c3e311a878ef2456 486 SMART SM00530 9 64 3.3E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_2506 80a514b96b33cb13722ebb3b90e69cbc 141 SUPERFAMILY SSF46955 12 88 3.48E-18 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_2506 80a514b96b33cb13722ebb3b90e69cbc 141 SMART SM00422 14 84 7.1E-9 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_2506 80a514b96b33cb13722ebb3b90e69cbc 141 Pfam PF13411 MerR HTH family regulatory protein 14 83 8.6E-23 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_2506 80a514b96b33cb13722ebb3b90e69cbc 141 Gene3D G3DSA:1.10.1660.10 8 83 6.8E-22 T 12-10-2018 Alide_4540 a62106a5cf68f6d0c919e59ba8ee1759 384 Pfam PF06834 TraU protein 44 379 4.3E-57 T 12-10-2018 IPR009649 TraU Alide_0666 7ee7a88e0734ced011c394c53381f17b 274 Pfam PF01061 ABC-2 type transporter 27 230 8.8E-15 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Alide_1144 33a3d86074ec23252e211e2e0e368265 336 Gene3D G3DSA:3.40.190.100 118 259 5.6E-143 T 12-10-2018 Alide_1144 33a3d86074ec23252e211e2e0e368265 336 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 40 318 9.7E-55 T 12-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Alide_1144 33a3d86074ec23252e211e2e0e368265 336 Gene3D G3DSA:3.40.190.10 30 331 5.6E-143 T 12-10-2018 Alide_1144 33a3d86074ec23252e211e2e0e368265 336 SUPERFAMILY SSF53850 29 334 3.91E-89 T 12-10-2018 Alide_2143 5fe9fb015c26a25a221a8bfc4856751f 48 Pfam PF10617 Protein of unknown function (DUF2474) 11 48 9.3E-17 T 12-10-2018 IPR018895 Protein of unknown function DUF2474 Alide_3396 075e89cd2c6df6383341b1887ad193ae 483 SUPERFAMILY SSF103378 19 470 1.11E-106 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_3396 075e89cd2c6df6383341b1887ad193ae 483 Pfam PF03972 MmgE/PrpD family 25 458 1.0E-108 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_3396 075e89cd2c6df6383341b1887ad193ae 483 Gene3D G3DSA:3.30.1330.120 292 424 9.4E-95 T 12-10-2018 Alide_3396 075e89cd2c6df6383341b1887ad193ae 483 Gene3D G3DSA:1.10.4100.10 43 441 9.4E-95 T 12-10-2018 Alide_3154 caa2bc07bb246697bd6ac46139537831 200 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 114 148 3.0E-6 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_3154 caa2bc07bb246697bd6ac46139537831 200 SUPERFAMILY SSF51161 12 170 3.88E-24 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily Alide_3154 caa2bc07bb246697bd6ac46139537831 200 Gene3D G3DSA:2.160.10.10 7 181 3.6E-24 T 12-10-2018 Alide_0813 b6b999c2c8f9b6de68d15086c9c5cfda 338 Pfam PF00005 ABC transporter 41 194 5.4E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0813 b6b999c2c8f9b6de68d15086c9c5cfda 338 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0813 b6b999c2c8f9b6de68d15086c9c5cfda 338 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 245 309 4.0E-19 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_0813 b6b999c2c8f9b6de68d15086c9c5cfda 338 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 244 328 2.4E-29 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_0813 b6b999c2c8f9b6de68d15086c9c5cfda 338 SMART SM00382 49 243 2.9E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0813 b6b999c2c8f9b6de68d15086c9c5cfda 338 SUPERFAMILY SSF52540 34 265 2.77E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0813 b6b999c2c8f9b6de68d15086c9c5cfda 338 Gene3D G3DSA:3.40.50.300 28 336 3.7E-99 T 12-10-2018 Alide_0157 7fc51ad54181f4aaf6fb5d26c42d72b2 287 PIRSF PIRSF015582 1 287 4.6E-69 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like Alide_0157 7fc51ad54181f4aaf6fb5d26c42d72b2 287 Gene3D G3DSA:3.20.20.60 4 284 7.3E-79 T 12-10-2018 Alide_0157 7fc51ad54181f4aaf6fb5d26c42d72b2 287 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 11 222 4.5E-35 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Alide_0157 7fc51ad54181f4aaf6fb5d26c42d72b2 287 SUPERFAMILY SSF51621 9 232 7.33E-57 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_3621 3d2d209b4be0b0a35b0f33df722ed4ab 553 Gene3D G3DSA:1.10.3720.10 18 279 1.2E-48 T 12-10-2018 IPR035906 MetI-like superfamily Alide_3621 3d2d209b4be0b0a35b0f33df722ed4ab 553 SUPERFAMILY SSF161098 305 547 7.33E-34 T 12-10-2018 IPR035906 MetI-like superfamily Alide_3621 3d2d209b4be0b0a35b0f33df722ed4ab 553 SUPERFAMILY SSF161098 16 274 3.27E-41 T 12-10-2018 IPR035906 MetI-like superfamily Alide_3621 3d2d209b4be0b0a35b0f33df722ed4ab 553 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 361 503 8.1E-6 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_3621 3d2d209b4be0b0a35b0f33df722ed4ab 553 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 267 1.9E-12 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_3621 3d2d209b4be0b0a35b0f33df722ed4ab 553 Gene3D G3DSA:1.10.3720.10 303 552 9.4E-30 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2798 ae9ac71836ae18ca1ba10b902e782bae 276 Pfam PF03618 Kinase/pyrophosphorylase 9 266 1.3E-81 T 12-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 Alide_2798 ae9ac71836ae18ca1ba10b902e782bae 276 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 6 275 74.543 T 12-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 SUPERFAMILY SSF54570 3 84 3.92E-35 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 2.1E-45 T 12-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.418 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 PIRSF PIRSF002144 1 91 2.0E-32 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 Pfam PF00203 Ribosomal protein S19 3 83 2.3E-37 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 2.2E-24 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 2.2E-24 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 2.2E-24 T 12-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 Gene3D G3DSA:3.30.860.10 1 91 1.6E-42 T 12-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0415 6b7e7ce981eaecc2efea337771b87c11 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 12-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0547 9d9acf4c5773a69fe6b304cbdb8a36f5 563 SMART SM00382 42 190 3.0E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0547 9d9acf4c5773a69fe6b304cbdb8a36f5 563 Pfam PF13401 AAA domain 42 175 1.3E-22 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0547 9d9acf4c5773a69fe6b304cbdb8a36f5 563 Gene3D G3DSA:3.40.50.300 26 189 8.9E-15 T 12-10-2018 Alide_0547 9d9acf4c5773a69fe6b304cbdb8a36f5 563 SUPERFAMILY SSF47090 494 553 1.28E-7 T 12-10-2018 IPR036365 PGBD-like superfamily Alide_0547 9d9acf4c5773a69fe6b304cbdb8a36f5 563 Gene3D G3DSA:3.90.70.10 374 479 6.7E-31 T 12-10-2018 Alide_0547 9d9acf4c5773a69fe6b304cbdb8a36f5 563 Gene3D G3DSA:1.10.101.10 480 549 6.7E-31 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Alide_0547 9d9acf4c5773a69fe6b304cbdb8a36f5 563 SUPERFAMILY SSF52540 7 269 1.03E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1779 879a87b342f94bffbbc8fc90adcd3620 259 SUPERFAMILY SSF52096 5 259 1.45E-64 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_1779 879a87b342f94bffbbc8fc90adcd3620 259 Gene3D G3DSA:1.10.12.10 204 259 5.2E-26 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_1779 879a87b342f94bffbbc8fc90adcd3620 259 Gene3D G3DSA:3.90.226.10 3 203 1.7E-59 T 12-10-2018 Alide_1779 879a87b342f94bffbbc8fc90adcd3620 259 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 102 122 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_1779 879a87b342f94bffbbc8fc90adcd3620 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 259 1.8E-50 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_0310 1dc8883f6ba87b2a4045563faaf79f13 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 318 5.8E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0310 1dc8883f6ba87b2a4045563faaf79f13 323 Gene3D G3DSA:3.40.190.10 125 247 4.5E-103 T 12-10-2018 Alide_0310 1dc8883f6ba87b2a4045563faaf79f13 323 PIRSF PIRSF017082 1 323 1.5E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0310 1dc8883f6ba87b2a4045563faaf79f13 323 Gene3D G3DSA:3.40.190.150 28 313 4.5E-103 T 12-10-2018 Alide_0310 1dc8883f6ba87b2a4045563faaf79f13 323 SUPERFAMILY SSF53850 114 282 8.47E-11 T 12-10-2018 Alide_0994 39cdbaa414dcd9d6337c0804530f02e1 318 Gene3D G3DSA:3.40.50.720 24 315 2.0E-111 T 12-10-2018 Alide_0994 39cdbaa414dcd9d6337c0804530f02e1 318 SUPERFAMILY SSF51735 100 287 1.78E-49 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0994 39cdbaa414dcd9d6337c0804530f02e1 318 SUPERFAMILY SSF52283 1 136 8.13E-33 T 12-10-2018 Alide_0994 39cdbaa414dcd9d6337c0804530f02e1 318 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 24 316 2.4E-28 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Alide_0994 39cdbaa414dcd9d6337c0804530f02e1 318 Gene3D G3DSA:3.40.50.720 96 285 2.0E-111 T 12-10-2018 Alide_0994 39cdbaa414dcd9d6337c0804530f02e1 318 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 286 6.6E-49 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Alide_0815 b4cd30a3126a75a38e25bbb0bb656e45 281 SUPERFAMILY SSF46689 2 76 2.69E-19 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_0815 b4cd30a3126a75a38e25bbb0bb656e45 281 Gene3D G3DSA:1.10.10.10 1 76 8.1E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0815 b4cd30a3126a75a38e25bbb0bb656e45 281 Pfam PF01380 SIS domain 131 254 2.6E-18 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Alide_0815 b4cd30a3126a75a38e25bbb0bb656e45 281 SUPERFAMILY SSF53697 95 261 4.58E-38 T 12-10-2018 Alide_0815 b4cd30a3126a75a38e25bbb0bb656e45 281 ProSitePatterns PS00356 LacI-type HTH domain signature. 35 53 - T 12-10-2018 Alide_0815 b4cd30a3126a75a38e25bbb0bb656e45 281 Gene3D G3DSA:3.40.50.10490 90 270 7.2E-40 T 12-10-2018 Alide_0815 b4cd30a3126a75a38e25bbb0bb656e45 281 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 74 1.8E-17 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Alide_3086 0605ace094d58fc28f2f550572596e86 188 Gene3D G3DSA:2.70.40.10 1 160 2.1E-55 T 12-10-2018 IPR036157 dUTPase-like superfamily Alide_3086 0605ace094d58fc28f2f550572596e86 188 SUPERFAMILY SSF51283 3 187 2.88E-52 T 12-10-2018 IPR036157 dUTPase-like superfamily Alide_3086 0605ace094d58fc28f2f550572596e86 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 4 187 1.8E-50 T 12-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 Alide_3086 0605ace094d58fc28f2f550572596e86 188 Pfam PF00692 dUTPase 80 184 8.4E-7 T 12-10-2018 IPR029054 dUTPase-like Alide_3086 0605ace094d58fc28f2f550572596e86 188 Hamap MF_00146 dCTP deaminase [dcd]. 1 188 28.314 T 12-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 Alide_2899 28680309ac8198ec27cb8358cbf95dbc 265 SUPERFAMILY SSF46785 18 90 6.3E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2899 28680309ac8198ec27cb8358cbf95dbc 265 Pfam PF09339 IclR helix-turn-helix domain 20 67 1.3E-14 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2899 28680309ac8198ec27cb8358cbf95dbc 265 Pfam PF01614 Bacterial transcriptional regulator 138 253 1.5E-6 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_2899 28680309ac8198ec27cb8358cbf95dbc 265 SMART SM00346 18 108 1.8E-23 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2899 28680309ac8198ec27cb8358cbf95dbc 265 Gene3D G3DSA:3.30.450.40 92 261 4.0E-29 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_2899 28680309ac8198ec27cb8358cbf95dbc 265 SUPERFAMILY SSF55781 76 263 7.85E-35 T 12-10-2018 Alide_2899 28680309ac8198ec27cb8358cbf95dbc 265 Gene3D G3DSA:1.10.10.10 11 88 1.6E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2283 1f358f272f9db9f333156ab7c602c109 310 SUPERFAMILY SSF51569 3 282 2.38E-61 T 12-10-2018 Alide_2283 1f358f272f9db9f333156ab7c602c109 310 Pfam PF00682 HMGL-like 5 279 1.3E-43 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Alide_2283 1f358f272f9db9f333156ab7c602c109 310 Gene3D G3DSA:3.20.20.70 1 291 2.2E-97 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2716 782489166cf22b9976118afcbc62806c 181 Pfam PF11358 Protein of unknown function (DUF3158) 13 166 6.9E-74 T 12-10-2018 IPR021502 Protein of unknown function DUF3158 Alide_3258 b78a4839cc467b4f4208b04979f5adc3 486 Pfam PF00171 Aldehyde dehydrogenase family 2 445 4.9E-85 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_3258 b78a4839cc467b4f4208b04979f5adc3 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 240 251 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_3258 b78a4839cc467b4f4208b04979f5adc3 486 Gene3D G3DSA:3.40.309.10 216 427 2.3E-147 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_3258 b78a4839cc467b4f4208b04979f5adc3 486 Gene3D G3DSA:3.40.605.10 14 447 2.3E-147 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_3258 b78a4839cc467b4f4208b04979f5adc3 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 212 219 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_3258 b78a4839cc467b4f4208b04979f5adc3 486 PIRSF PIRSF036492 1 483 4.1E-158 T 12-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 Alide_3258 b78a4839cc467b4f4208b04979f5adc3 486 SUPERFAMILY SSF53720 2 472 2.88E-114 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_2589 535e9e818a71a8ef8bf79e9269072f13 316 Pfam PF00849 RNA pseudouridylate synthase 100 247 2.9E-22 T 12-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_2589 535e9e818a71a8ef8bf79e9269072f13 316 SUPERFAMILY SSF55120 87 297 5.6E-52 T 12-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_2589 535e9e818a71a8ef8bf79e9269072f13 316 Gene3D G3DSA:3.30.2350.10 84 297 1.0E-43 T 12-10-2018 Alide_2589 535e9e818a71a8ef8bf79e9269072f13 316 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 139 153 - T 12-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Alide_0934 5a62e5b81ec9b860dbc27e518c495b2f 335 SUPERFAMILY SSF52540 88 326 2.49E-28 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0934 5a62e5b81ec9b860dbc27e518c495b2f 335 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 109 246 2.5E-13 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_0934 5a62e5b81ec9b860dbc27e518c495b2f 335 SMART SM00382 105 252 4.0E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0934 5a62e5b81ec9b860dbc27e518c495b2f 335 Gene3D G3DSA:3.40.50.300 75 248 1.9E-36 T 12-10-2018 Alide_2689 72aa4f083a590f0758340100b7222d20 305 Pfam PF16200 C-terminal region of band_7 240 301 5.8E-19 T 12-10-2018 IPR032435 Band 7, C-terminal extension Reactome: R-HSA-8949664 Alide_2689 72aa4f083a590f0758340100b7222d20 305 Gene3D G3DSA:3.30.479.30 45 177 5.2E-40 T 12-10-2018 Alide_2689 72aa4f083a590f0758340100b7222d20 305 Pfam PF01145 SPFH domain / Band 7 family 21 190 9.0E-32 T 12-10-2018 IPR001107 Band 7 domain Alide_2689 72aa4f083a590f0758340100b7222d20 305 SUPERFAMILY SSF117892 48 182 1.23E-40 T 12-10-2018 IPR036013 Band 7/SPFH domain superfamily Alide_2689 72aa4f083a590f0758340100b7222d20 305 PRINTS PR00721 Stomatin signature 24 46 1.7E-31 T 12-10-2018 IPR001972 Stomatin family GO:0016020 Alide_2689 72aa4f083a590f0758340100b7222d20 305 PRINTS PR00721 Stomatin signature 170 191 1.7E-31 T 12-10-2018 IPR001972 Stomatin family GO:0016020 Alide_2689 72aa4f083a590f0758340100b7222d20 305 PRINTS PR00721 Stomatin signature 72 93 1.7E-31 T 12-10-2018 IPR001972 Stomatin family GO:0016020 Alide_2689 72aa4f083a590f0758340100b7222d20 305 PRINTS PR00721 Stomatin signature 107 124 1.7E-31 T 12-10-2018 IPR001972 Stomatin family GO:0016020 Alide_2689 72aa4f083a590f0758340100b7222d20 305 PRINTS PR00721 Stomatin signature 127 150 1.7E-31 T 12-10-2018 IPR001972 Stomatin family GO:0016020 Alide_2689 72aa4f083a590f0758340100b7222d20 305 PRINTS PR00721 Stomatin signature 151 169 1.7E-31 T 12-10-2018 IPR001972 Stomatin family GO:0016020 Alide_2689 72aa4f083a590f0758340100b7222d20 305 SMART SM00244 17 175 1.6E-57 T 12-10-2018 IPR001107 Band 7 domain Alide_3000 5930f8c7634e776be22e45f371287b73 271 Pfam PF00303 Thymidylate synthase 8 271 3.9E-126 T 12-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 SUPERFAMILY SSF55831 4 271 3.53E-131 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 ProSitePatterns PS00091 Thymidylate synthase active site. 133 161 - T 12-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 Hamap MF_00008 Thymidylate synthase [thyA]. 7 271 39.783 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 PRINTS PR00108 Thymidylate synthase family signature 122 141 3.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 PRINTS PR00108 Thymidylate synthase family signature 148 163 3.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 PRINTS PR00108 Thymidylate synthase family signature 204 221 3.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 PRINTS PR00108 Thymidylate synthase family signature 166 192 3.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 PRINTS PR00108 Thymidylate synthase family signature 48 69 3.0E-47 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 Gene3D G3DSA:3.30.572.10 7 271 8.0E-131 T 12-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 94 271 6.7E-93 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3000 5930f8c7634e776be22e45f371287b73 271 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 8 90 5.4E-38 T 12-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 Alide_3129 3c0000fcfec3366360e8d349acfb8148 456 Gene3D G3DSA:3.90.1150.10 7 451 2.0E-192 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_3129 3c0000fcfec3366360e8d349acfb8148 456 Pfam PF01212 Beta-eliminating lyase 47 422 1.1E-81 T 12-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Alide_3129 3c0000fcfec3366360e8d349acfb8148 456 SUPERFAMILY SSF53383 4 452 1.39E-124 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3129 3c0000fcfec3366360e8d349acfb8148 456 Gene3D G3DSA:3.40.640.10 59 310 2.0E-192 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3129 3c0000fcfec3366360e8d349acfb8148 456 ProSitePatterns PS00853 Beta-eliminating lyases pyridoxal-phosphate attachment site. 247 265 - T 12-10-2018 IPR018176 Tryptophanase, conserved site KEGG: 00380+4.1.99.1 Alide_3129 3c0000fcfec3366360e8d349acfb8148 456 PIRSF PIRSF001386 1 456 5.6E-192 T 12-10-2018 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1 Alide_4200 029cfd17eaddb7ca44b7275d547dc355 276 SUPERFAMILY SSF55681 14 229 1.04E-36 T 12-10-2018 Alide_4200 029cfd17eaddb7ca44b7275d547dc355 276 Gene3D G3DSA:2.30.30.100 232 276 3.5E-8 T 12-10-2018 Alide_4200 029cfd17eaddb7ca44b7275d547dc355 276 Pfam PF03099 Biotin/lipoate A/B protein ligase family 32 170 2.1E-8 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Alide_4200 029cfd17eaddb7ca44b7275d547dc355 276 Gene3D G3DSA:3.30.930.10 16 230 9.4E-46 T 12-10-2018 Alide_4200 029cfd17eaddb7ca44b7275d547dc355 276 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 28 272 3.0E-38 T 12-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_4200 029cfd17eaddb7ca44b7275d547dc355 276 Pfam PF02237 Biotin protein ligase C terminal domain 233 273 2.4E-7 T 12-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_2371 bf5e095d77def77c24d63cdce2ab6e03 166 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 152 2.4E-23 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Alide_4552 ce3fa72e2d2408d6d54e9ad04124a6ed 267 PIRSF PIRSF003073 4 256 1.6E-72 T 12-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Alide_4552 ce3fa72e2d2408d6d54e9ad04124a6ed 267 SMART SM00382 101 238 1.4E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4552 ce3fa72e2d2408d6d54e9ad04124a6ed 267 SUPERFAMILY SSF52540 75 234 4.47E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4552 ce3fa72e2d2408d6d54e9ad04124a6ed 267 Pfam PF01695 IstB-like ATP binding protein 58 233 1.2E-58 T 12-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Alide_4552 ce3fa72e2d2408d6d54e9ad04124a6ed 267 Gene3D G3DSA:3.40.50.300 66 251 8.5E-42 T 12-10-2018 Alide_4045 ce3fa72e2d2408d6d54e9ad04124a6ed 267 PIRSF PIRSF003073 4 256 1.6E-72 T 12-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Alide_4045 ce3fa72e2d2408d6d54e9ad04124a6ed 267 SMART SM00382 101 238 1.4E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4045 ce3fa72e2d2408d6d54e9ad04124a6ed 267 SUPERFAMILY SSF52540 75 234 4.47E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4045 ce3fa72e2d2408d6d54e9ad04124a6ed 267 Pfam PF01695 IstB-like ATP binding protein 58 233 1.2E-58 T 12-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Alide_4045 ce3fa72e2d2408d6d54e9ad04124a6ed 267 Gene3D G3DSA:3.40.50.300 66 251 8.5E-42 T 12-10-2018 Alide_0474 ce3fa72e2d2408d6d54e9ad04124a6ed 267 PIRSF PIRSF003073 4 256 1.6E-72 T 12-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Alide_0474 ce3fa72e2d2408d6d54e9ad04124a6ed 267 SMART SM00382 101 238 1.4E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0474 ce3fa72e2d2408d6d54e9ad04124a6ed 267 SUPERFAMILY SSF52540 75 234 4.47E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0474 ce3fa72e2d2408d6d54e9ad04124a6ed 267 Pfam PF01695 IstB-like ATP binding protein 58 233 1.2E-58 T 12-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Alide_0474 ce3fa72e2d2408d6d54e9ad04124a6ed 267 Gene3D G3DSA:3.40.50.300 66 251 8.5E-42 T 12-10-2018 Alide_4005 ce3fa72e2d2408d6d54e9ad04124a6ed 267 PIRSF PIRSF003073 4 256 1.6E-72 T 12-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Alide_4005 ce3fa72e2d2408d6d54e9ad04124a6ed 267 SMART SM00382 101 238 1.4E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4005 ce3fa72e2d2408d6d54e9ad04124a6ed 267 SUPERFAMILY SSF52540 75 234 4.47E-23 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4005 ce3fa72e2d2408d6d54e9ad04124a6ed 267 Pfam PF01695 IstB-like ATP binding protein 58 233 1.2E-58 T 12-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Alide_4005 ce3fa72e2d2408d6d54e9ad04124a6ed 267 Gene3D G3DSA:3.40.50.300 66 251 8.5E-42 T 12-10-2018 Alide_2869 531d1c7ada2814420fb8730214aa39b9 317 PIRSF PIRSF006268 1 312 9.5E-74 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Alide_2869 531d1c7ada2814420fb8730214aa39b9 317 Pfam PF02424 ApbE family 11 291 3.3E-74 T 12-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Alide_2869 531d1c7ada2814420fb8730214aa39b9 317 Gene3D G3DSA:3.10.520.20 2 316 6.6E-95 T 12-10-2018 Alide_2869 531d1c7ada2814420fb8730214aa39b9 317 SUPERFAMILY SSF143631 5 306 3.79E-83 T 12-10-2018 IPR003374 ApbE-like superfamily Alide_1913 645a266a126dd2bc91296ce80624cf12 319 PIRSF PIRSF017082 1 319 9.4E-97 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1913 645a266a126dd2bc91296ce80624cf12 319 Gene3D G3DSA:3.40.190.10 122 246 3.6E-72 T 12-10-2018 Alide_1913 645a266a126dd2bc91296ce80624cf12 319 Gene3D G3DSA:3.40.190.150 28 310 3.6E-72 T 12-10-2018 Alide_1913 645a266a126dd2bc91296ce80624cf12 319 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 311 3.1E-30 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1913 645a266a126dd2bc91296ce80624cf12 319 SUPERFAMILY SSF53850 36 227 1.14E-7 T 12-10-2018 Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 Pfam PF13488 Glycine zipper 31 76 5.2E-10 T 12-10-2018 IPR039567 Glycine zipper domain Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 192 212 4.4E-7 T 12-10-2018 Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 172 191 4.4E-7 T 12-10-2018 Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 154 171 4.4E-7 T 12-10-2018 Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 Pfam PF00691 OmpA family 109 203 1.0E-22 T 12-10-2018 IPR006665 OmpA-like domain Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 PRINTS PR01021 OMPA domain signature 109 131 9.9E-10 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 PRINTS PR01021 OMPA domain signature 154 170 9.9E-10 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 PRINTS PR01021 OMPA domain signature 139 154 9.9E-10 T 12-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 SUPERFAMILY SSF103088 96 209 7.85E-37 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_4238 a00202763eccf2da4f03bdbec0d1cf60 214 Gene3D G3DSA:3.30.1330.60 71 213 1.6E-44 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_1067 04e22319a73d1b11812718f00fa174e5 426 Gene3D G3DSA:2.30.40.10 20 423 5.6E-149 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Alide_1067 04e22319a73d1b11812718f00fa174e5 426 Pfam PF01979 Amidohydrolase family 65 424 1.4E-50 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_1067 04e22319a73d1b11812718f00fa174e5 426 Gene3D G3DSA:3.20.20.140 68 389 5.6E-149 T 12-10-2018 Alide_1067 04e22319a73d1b11812718f00fa174e5 426 SUPERFAMILY SSF51338 10 83 9.35E-9 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Alide_1067 04e22319a73d1b11812718f00fa174e5 426 SUPERFAMILY SSF51338 351 423 1.76E-8 T 12-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Alide_1067 04e22319a73d1b11812718f00fa174e5 426 SUPERFAMILY SSF51556 67 373 2.4E-92 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_1067 04e22319a73d1b11812718f00fa174e5 426 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 23 423 6.3E-147 T 12-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 Alide_0511 9c21a5a5b06b5b7c6e4afc112bad827c 242 Gene3D G3DSA:1.20.950.20 2 219 1.1E-73 T 12-10-2018 Alide_0511 9c21a5a5b06b5b7c6e4afc112bad827c 242 SUPERFAMILY SSF103501 4 227 3.27E-64 T 12-10-2018 IPR036197 NarG-like superfamily Alide_0511 9c21a5a5b06b5b7c6e4afc112bad827c 242 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 5 228 1.5E-83 T 12-10-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 Alide_0511 9c21a5a5b06b5b7c6e4afc112bad827c 242 Pfam PF02665 Nitrate reductase gamma subunit 6 227 3.2E-79 T 12-10-2018 IPR023234 NarG-like domain Alide_3989 d949e65b1cfef0063cf3356b3acd8c4a 238 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 73 82 - T 12-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_3989 d949e65b1cfef0063cf3356b3acd8c4a 238 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 22 238 32.652 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_3989 d949e65b1cfef0063cf3356b3acd8c4a 238 SMART SM00986 65 233 2.3E-32 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_3989 d949e65b1cfef0063cf3356b3acd8c4a 238 Pfam PF03167 Uracil DNA glycosylase superfamily 67 233 5.5E-21 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_3989 d949e65b1cfef0063cf3356b3acd8c4a 238 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 24 237 2.6E-66 T 12-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_3989 d949e65b1cfef0063cf3356b3acd8c4a 238 Gene3D G3DSA:3.40.470.10 5 238 2.2E-74 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_3989 d949e65b1cfef0063cf3356b3acd8c4a 238 SMART SM00987 65 233 2.3E-32 T 12-10-2018 Alide_3989 d949e65b1cfef0063cf3356b3acd8c4a 238 SUPERFAMILY SSF52141 21 237 8.5E-71 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_1509 3fec7d1efeeb8a3894691f5d54aa3838 128 Gene3D G3DSA:3.40.30.10 5 122 7.2E-41 T 12-10-2018 Alide_1509 3fec7d1efeeb8a3894691f5d54aa3838 128 SUPERFAMILY SSF52833 5 121 4.27E-31 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_1509 3fec7d1efeeb8a3894691f5d54aa3838 128 Pfam PF03960 ArsC family 9 120 1.2E-12 T 12-10-2018 IPR006660 Arsenate reductase-like Alide_1509 3fec7d1efeeb8a3894691f5d54aa3838 128 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 6 120 6.6E-28 T 12-10-2018 IPR006504 Transcriptional regulator Spx/MgsR Alide_0915 c288dc4a0668c19c2b8a41d6856f9fb1 204 SUPERFAMILY SSF52540 5 198 5.24E-33 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0915 c288dc4a0668c19c2b8a41d6856f9fb1 204 Gene3D G3DSA:3.40.50.300 1 203 1.2E-61 T 12-10-2018 Alide_0915 c288dc4a0668c19c2b8a41d6856f9fb1 204 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 10 187 3.1E-44 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Alide_0915 c288dc4a0668c19c2b8a41d6856f9fb1 204 Pfam PF01121 Dephospho-CoA kinase 9 185 1.6E-53 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Alide_0915 c288dc4a0668c19c2b8a41d6856f9fb1 204 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 6 201 25.618 T 12-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Alide_3845 68745dcfc5f707d16ea021639a5b058d 254 Pfam PF01311 Bacterial export proteins, family 1 16 247 6.3E-67 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Alide_3845 68745dcfc5f707d16ea021639a5b058d 254 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 1.8E-29 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Alide_3845 68745dcfc5f707d16ea021639a5b058d 254 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 1.8E-29 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Alide_3845 68745dcfc5f707d16ea021639a5b058d 254 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 1.8E-29 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Alide_3845 68745dcfc5f707d16ea021639a5b058d 254 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 1.8E-29 T 12-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Alide_3845 68745dcfc5f707d16ea021639a5b058d 254 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 16 253 6.6E-62 T 12-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 Alide_3699 c0399ecbcbd6debf69596b80e3638b48 320 Gene3D G3DSA:3.40.190.10 126 246 2.0E-85 T 12-10-2018 Alide_3699 c0399ecbcbd6debf69596b80e3638b48 320 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 315 7.3E-65 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3699 c0399ecbcbd6debf69596b80e3638b48 320 PIRSF PIRSF017082 1 318 7.1E-77 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3699 c0399ecbcbd6debf69596b80e3638b48 320 SUPERFAMILY SSF53850 113 289 9.96E-12 T 12-10-2018 Alide_3699 c0399ecbcbd6debf69596b80e3638b48 320 Gene3D G3DSA:3.40.190.150 29 311 2.0E-85 T 12-10-2018 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Pfam PF01565 FAD binding domain 186 331 6.2E-22 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Pfam PF12447 Protein of unknown function (DUF3683) 19 136 7.1E-51 T 12-10-2018 IPR022153 Protein of unknown function DUF3683 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 SUPERFAMILY SSF46548 810 929 7.59E-14 T 12-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 SUPERFAMILY SSF55103 443 773 7.66E-40 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Pfam PF11880 Domain of unknown function (DUF3400) 1259 1306 6.6E-23 T 12-10-2018 IPR021817 Protein of unknown function DUF3400 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Gene3D G3DSA:3.30.465.40 147 349 1.6E-34 T 12-10-2018 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Pfam PF02913 FAD linked oxidases, C-terminal domain 684 772 1.3E-17 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Pfam PF02913 FAD linked oxidases, C-terminal domain 443 567 3.4E-6 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Gene3D G3DSA:3.30.70.2740 662 736 4.0E-7 T 12-10-2018 Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Pfam PF13183 4Fe-4S dicluster domain 834 913 3.3E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Pfam PF02754 Cysteine-rich domain 1167 1256 5.9E-4 T 12-10-2018 IPR004017 Cysteine-rich domain Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 Pfam PF02754 Cysteine-rich domain 1043 1132 1.6E-6 T 12-10-2018 IPR004017 Cysteine-rich domain Alide_0950 cebea956402486b85085d99c4a9f9c6a 1306 SUPERFAMILY SSF56176 151 414 4.05E-53 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_0861 e7078f6b9a1cf9b2f4229d480a042fa4 136 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 19 135 9.1E-31 T 12-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Alide_0861 e7078f6b9a1cf9b2f4229d480a042fa4 136 Pfam PF02675 S-adenosylmethionine decarboxylase 23 135 3.3E-29 T 12-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Alide_0861 e7078f6b9a1cf9b2f4229d480a042fa4 136 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 17 136 24.015 T 12-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Alide_0861 e7078f6b9a1cf9b2f4229d480a042fa4 136 Gene3D G3DSA:3.60.90.10 10 136 4.9E-40 T 12-10-2018 Alide_0861 e7078f6b9a1cf9b2f4229d480a042fa4 136 SUPERFAMILY SSF56276 19 135 7.06E-32 T 12-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Alide_3647 d69c6ed7879524fa669a790ea403abef 230 Gene3D G3DSA:1.10.10.10 125 228 1.8E-33 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3647 d69c6ed7879524fa669a790ea403abef 230 Gene3D G3DSA:3.40.50.2300 1 123 6.9E-29 T 12-10-2018 Alide_3647 d69c6ed7879524fa669a790ea403abef 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 2.6E-27 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3647 d69c6ed7879524fa669a790ea403abef 230 SMART SM00862 148 223 2.9E-28 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_3647 d69c6ed7879524fa669a790ea403abef 230 SUPERFAMILY SSF52172 1 182 7.45E-31 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3647 d69c6ed7879524fa669a790ea403abef 230 SMART SM00448 2 114 8.3E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3647 d69c6ed7879524fa669a790ea403abef 230 Pfam PF00072 Response regulator receiver domain 5 115 3.6E-18 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_0127 a74bc9f5c97aab6ae8060180d1191389 142 Gene3D G3DSA:1.20.120.520 1 141 7.9E-13 T 12-10-2018 Alide_0127 a74bc9f5c97aab6ae8060180d1191389 142 Pfam PF01814 Hemerythrin HHE cation binding domain 2 133 6.2E-12 T 12-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Alide_3423 a61346a42dc87ec8f14e2c37c953de2b 374 Pfam PF02445 Quinolinate synthetase A protein 46 353 9.8E-105 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Alide_3423 a61346a42dc87ec8f14e2c37c953de2b 374 SUPERFAMILY SSF142754 44 354 4.05E-108 T 12-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Alide_3423 a61346a42dc87ec8f14e2c37c953de2b 374 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 40 355 2.2E-107 T 12-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Alide_3423 a61346a42dc87ec8f14e2c37c953de2b 374 Gene3D G3DSA:3.40.50.10800 215 310 2.0E-95 T 12-10-2018 Alide_3423 a61346a42dc87ec8f14e2c37c953de2b 374 Gene3D G3DSA:3.40.50.10800 46 335 2.0E-95 T 12-10-2018 Alide_3423 a61346a42dc87ec8f14e2c37c953de2b 374 Gene3D G3DSA:3.40.50.10800 130 352 2.0E-95 T 12-10-2018 Alide_4381 c06a61b32841ee5ff0633cf502649e54 237 SUPERFAMILY SSF75217 71 234 6.98E-46 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases Alide_4381 c06a61b32841ee5ff0633cf502649e54 237 Gene3D G3DSA:2.40.240.20 1 67 1.8E-20 T 12-10-2018 Alide_4381 c06a61b32841ee5ff0633cf502649e54 237 Gene3D G3DSA:3.40.1280.10 71 237 1.2E-50 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Alide_4381 c06a61b32841ee5ff0633cf502649e54 237 PIRSF PIRSF015601 1 237 3.3E-54 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Alide_4381 c06a61b32841ee5ff0633cf502649e54 237 SUPERFAMILY SSF88697 1 67 8.12E-14 T 12-10-2018 IPR015947 PUA-like superfamily Alide_4381 c06a61b32841ee5ff0633cf502649e54 237 Pfam PF04452 RNA methyltransferase 20 234 8.9E-65 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Alide_4381 c06a61b32841ee5ff0633cf502649e54 237 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 11 234 8.8E-54 T 12-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 Alide_0750 e3f79fa6a986fb4eb40f1a32c6a69e61 408 SUPERFAMILY SSF53756 64 395 2.12E-70 T 12-10-2018 Alide_0750 e3f79fa6a986fb4eb40f1a32c6a69e61 408 Gene3D G3DSA:3.40.50.2000 72 387 6.0E-64 T 12-10-2018 Alide_0750 e3f79fa6a986fb4eb40f1a32c6a69e61 408 Pfam PF00534 Glycosyl transferases group 1 214 364 1.2E-32 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 Alide_0750 e3f79fa6a986fb4eb40f1a32c6a69e61 408 Pfam PF13439 Glycosyltransferase Family 4 73 208 4.5E-15 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Alide_0750 e3f79fa6a986fb4eb40f1a32c6a69e61 408 Gene3D G3DSA:3.40.50.2000 204 376 6.0E-64 T 12-10-2018 Alide_4030 7df60edc834c2b3be1aebc869f7b1c91 148 TIGRFAM TIGR03757 conj_TIGR03757: integrating conjugative element protein, PFL_4709 family 35 144 1.5E-42 T 12-10-2018 IPR011090 Integrating conjugative element protein, PFL4709 Alide_4030 7df60edc834c2b3be1aebc869f7b1c91 148 Pfam PF07511 Protein of unknown function (DUF1525) 35 145 5.9E-41 T 12-10-2018 IPR011090 Integrating conjugative element protein, PFL4709 Alide_4024 06b490bf4a91609076628390ea9a4d0a 304 Pfam PF11920 Protein of unknown function (DUF3438) 9 283 6.9E-125 T 12-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 Alide_4024 06b490bf4a91609076628390ea9a4d0a 304 TIGRFAM TIGR03749 conj_TIGR03749: integrating conjugative element protein, PFL_4704 family 13 274 2.0E-112 T 12-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 Alide_3230 ea3c4db4d54ab35460654127ed28c7ca 240 Pfam PF01814 Hemerythrin HHE cation binding domain 85 223 3.5E-25 T 12-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 Alide_3230 ea3c4db4d54ab35460654127ed28c7ca 240 Pfam PF04405 Domain of Unknown function (DUF542) 16 69 1.6E-22 T 12-10-2018 IPR019903 Repair of iron centres family Alide_3230 ea3c4db4d54ab35460654127ed28c7ca 240 Gene3D G3DSA:1.20.120.520 84 230 2.0E-29 T 12-10-2018 Alide_3230 ea3c4db4d54ab35460654127ed28c7ca 240 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 18 223 2.2E-72 T 12-10-2018 IPR019903 Repair of iron centres family Alide_0685 329a15c869097c82352620e7a13d2f8e 156 SUPERFAMILY SSF54637 2 151 1.74E-36 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0685 329a15c869097c82352620e7a13d2f8e 156 Gene3D G3DSA:3.10.129.10 2 155 1.4E-42 T 12-10-2018 Alide_0685 329a15c869097c82352620e7a13d2f8e 156 Pfam PF01575 MaoC like domain 16 116 3.6E-23 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_0900 5629dc7866e9a1c45f3aaafdd1948e7c 250 Gene3D G3DSA:3.40.1390.30 16 234 1.3E-72 T 12-10-2018 Alide_0900 5629dc7866e9a1c45f3aaafdd1948e7c 250 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 235 1.3E-52 T 12-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Alide_0900 5629dc7866e9a1c45f3aaafdd1948e7c 250 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 4 249 1.4E-54 T 12-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Alide_0900 5629dc7866e9a1c45f3aaafdd1948e7c 250 Gene3D G3DSA:3.40.1390.30 99 221 1.3E-72 T 12-10-2018 Alide_0900 5629dc7866e9a1c45f3aaafdd1948e7c 250 SUPERFAMILY SSF102705 4 249 2.75E-73 T 12-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily Alide_2137 58758a3cf50fc9c2a0204c2a3fab3522 328 Gene3D G3DSA:3.40.50.1100 20 314 4.7E-116 T 12-10-2018 Alide_2137 58758a3cf50fc9c2a0204c2a3fab3522 328 Gene3D G3DSA:3.40.50.1100 57 153 4.7E-116 T 12-10-2018 Alide_2137 58758a3cf50fc9c2a0204c2a3fab3522 328 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 310 1.3E-75 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_2137 58758a3cf50fc9c2a0204c2a3fab3522 328 PIRSF PIRSF006278 17 326 8.4E-8 T 12-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Alide_2137 58758a3cf50fc9c2a0204c2a3fab3522 328 SUPERFAMILY SSF53686 10 318 3.93E-95 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_4313 ca97ed2ee3729e951dcaf350e63a8edb 144 SUPERFAMILY SSF54637 20 141 2.86E-30 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_4313 ca97ed2ee3729e951dcaf350e63a8edb 144 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 26 137 1.3E-14 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_4313 ca97ed2ee3729e951dcaf350e63a8edb 144 Pfam PF03061 Thioesterase superfamily 57 132 7.3E-13 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_4313 ca97ed2ee3729e951dcaf350e63a8edb 144 Gene3D G3DSA:3.10.129.10 14 143 3.2E-39 T 12-10-2018 Alide_1015 d8fd04ae936f6217878a68b210832179 338 Pfam PF00069 Protein kinase domain 18 289 1.3E-40 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Alide_1015 d8fd04ae936f6217878a68b210832179 338 Gene3D G3DSA:3.30.200.20 2 117 1.1E-18 T 12-10-2018 Alide_1015 d8fd04ae936f6217878a68b210832179 338 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 160 172 - T 12-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Alide_1015 d8fd04ae936f6217878a68b210832179 338 SMART SM00220 18 293 9.6E-43 T 12-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Alide_1015 d8fd04ae936f6217878a68b210832179 338 PIRSF PIRSF000654 67 293 1.0E-17 T 12-10-2018 Alide_1015 d8fd04ae936f6217878a68b210832179 338 SUPERFAMILY SSF56112 14 292 1.62E-58 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_1015 d8fd04ae936f6217878a68b210832179 338 Gene3D G3DSA:1.10.510.10 126 306 4.1E-33 T 12-10-2018 Alide_0170 d0fdc86e8057c9ce7f5beed71cafc2d5 394 SUPERFAMILY SSF89796 10 392 6.93E-109 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0170 d0fdc86e8057c9ce7f5beed71cafc2d5 394 Pfam PF02515 CoA-transferase family III 12 368 2.2E-99 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0170 d0fdc86e8057c9ce7f5beed71cafc2d5 394 Gene3D G3DSA:3.30.1540.10 232 323 2.1E-105 T 12-10-2018 Alide_0170 d0fdc86e8057c9ce7f5beed71cafc2d5 394 Gene3D G3DSA:3.40.50.10540 11 386 2.1E-105 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4514 67a81988da723ebc284cbf9ad4e2decf 185 SUPERFAMILY SSF46689 138 182 8.51E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4514 67a81988da723ebc284cbf9ad4e2decf 185 SMART SM00857 2 136 1.5E-61 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_4514 67a81988da723ebc284cbf9ad4e2decf 185 Gene3D G3DSA:3.40.50.1390 1 125 2.4E-52 T 12-10-2018 Alide_4514 67a81988da723ebc284cbf9ad4e2decf 185 ProSitePatterns PS00398 Site-specific recombinases signature 2. 55 67 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Alide_4514 67a81988da723ebc284cbf9ad4e2decf 185 Gene3D G3DSA:1.10.10.60 138 185 2.2E-10 T 12-10-2018 Alide_4514 67a81988da723ebc284cbf9ad4e2decf 185 ProSitePatterns PS00397 Site-specific recombinases active site. 5 13 - T 12-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Alide_4514 67a81988da723ebc284cbf9ad4e2decf 185 Pfam PF02796 Helix-turn-helix domain of resolvase 138 181 1.8E-7 T 12-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 Alide_4514 67a81988da723ebc284cbf9ad4e2decf 185 SUPERFAMILY SSF53041 1 135 5.23E-46 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Alide_4514 67a81988da723ebc284cbf9ad4e2decf 185 Pfam PF00239 Resolvase, N terminal domain 3 135 4.8E-47 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_4163 f09daa9e1c11a0395c00ed4ddfbd1e85 392 Gene3D G3DSA:3.40.50.10540 6 352 1.9E-129 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4163 f09daa9e1c11a0395c00ed4ddfbd1e85 392 Pfam PF02515 CoA-transferase family III 6 377 8.5E-121 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_4163 f09daa9e1c11a0395c00ed4ddfbd1e85 392 SUPERFAMILY SSF89796 4 378 1.09E-123 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4163 f09daa9e1c11a0395c00ed4ddfbd1e85 392 Gene3D G3DSA:3.30.1540.10 236 326 1.9E-129 T 12-10-2018 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 Gene3D G3DSA:1.20.1260.10 1 154 5.1E-59 T 12-10-2018 IPR012347 Ferritin-like Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 PIRSF PIRSF002560 1 155 1.9E-59 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 SUPERFAMILY SSF47240 1 155 1.94E-42 T 12-10-2018 IPR009078 Ferritin-like superfamily Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 PRINTS PR00601 Bacterioferritin signature 44 64 1.1E-36 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 PRINTS PR00601 Bacterioferritin signature 85 105 1.1E-36 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 PRINTS PR00601 Bacterioferritin signature 106 126 1.1E-36 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 PRINTS PR00601 Bacterioferritin signature 128 149 1.1E-36 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 PRINTS PR00601 Bacterioferritin signature 23 43 1.1E-36 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 PRINTS PR00601 Bacterioferritin signature 3 22 1.1E-36 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 TIGRFAM TIGR00754 bfr: bacterioferritin 1 153 1.5E-42 T 12-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 Alide_3338 807fc171b1007d41bdcadc3af69caa64 155 Pfam PF00210 Ferritin-like domain 10 144 4.3E-32 T 12-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Alide_2427 ee839dd0201c708e49cd2198700abd71 212 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 210 6.5E-94 T 12-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 Alide_2427 ee839dd0201c708e49cd2198700abd71 212 Gene3D G3DSA:3.40.1080.10 3 211 1.2E-96 T 12-10-2018 Alide_2427 ee839dd0201c708e49cd2198700abd71 212 Pfam PF01144 Coenzyme A transferase 7 203 6.3E-39 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Alide_2427 ee839dd0201c708e49cd2198700abd71 212 SUPERFAMILY SSF100950 3 210 1.18E-69 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_2427 ee839dd0201c708e49cd2198700abd71 212 SMART SM00882 6 205 2.7E-82 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Alide_1501 245f60116773e8f213081f49ab39d48b 239 Gene3D G3DSA:3.40.50.620 6 237 7.6E-62 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1501 245f60116773e8f213081f49ab39d48b 239 SUPERFAMILY SSF52402 8 230 4.85E-50 T 12-10-2018 Alide_1501 245f60116773e8f213081f49ab39d48b 239 PIRSF PIRSF006293 5 237 3.2E-65 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Alide_1501 245f60116773e8f213081f49ab39d48b 239 Pfam PF06508 Queuosine biosynthesis protein QueC 8 230 1.8E-69 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Alide_1501 245f60116773e8f213081f49ab39d48b 239 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 7 235 49.761 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Alide_1501 245f60116773e8f213081f49ab39d48b 239 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 9 223 3.9E-58 T 12-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 Alide_0609 a2177b1b03bf3459203014f28cea993a 228 SUPERFAMILY SSF52833 3 90 1.18E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0609 a2177b1b03bf3459203014f28cea993a 228 Pfam PF13410 Glutathione S-transferase, C-terminal domain 138 208 3.7E-6 T 12-10-2018 Alide_0609 a2177b1b03bf3459203014f28cea993a 228 Gene3D G3DSA:1.20.1050.10 87 200 1.5E-60 T 12-10-2018 Alide_0609 a2177b1b03bf3459203014f28cea993a 228 Pfam PF13417 Glutathione S-transferase, N-terminal domain 10 85 4.7E-16 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_0609 a2177b1b03bf3459203014f28cea993a 228 Gene3D G3DSA:3.40.30.10 4 207 1.5E-60 T 12-10-2018 Alide_0609 a2177b1b03bf3459203014f28cea993a 228 SUPERFAMILY SSF47616 85 207 1.85E-16 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_4321 7fd2867eb209df7635106eea52c0bfc7 379 Gene3D G3DSA:3.10.129.10 26 244 2.9E-35 T 12-10-2018 Alide_4321 7fd2867eb209df7635106eea52c0bfc7 379 SUPERFAMILY SSF54637 208 378 1.41E-13 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_4321 7fd2867eb209df7635106eea52c0bfc7 379 SUPERFAMILY SSF54637 27 180 1.65E-21 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_4321 7fd2867eb209df7635106eea52c0bfc7 379 Gene3D G3DSA:3.10.129.10 274 373 1.9E-11 T 12-10-2018 Alide_4321 7fd2867eb209df7635106eea52c0bfc7 379 Pfam PF13452 N-terminal half of MaoC dehydratase 27 156 2.8E-17 T 12-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Alide_3366 e9c0744defdf132ccbc97d40babf5f36 386 Pfam PF13449 Esterase-like activity of phytase 52 357 3.4E-72 T 12-10-2018 IPR027372 Phytase-like domain Alide_1189 fee8b1e9b4300933f1675fa424ea00e8 210 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 34 200 5.6E-42 T 12-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like Alide_1189 fee8b1e9b4300933f1675fa424ea00e8 210 SUPERFAMILY SSF89392 22 208 2.82E-44 T 12-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Alide_1189 fee8b1e9b4300933f1675fa424ea00e8 210 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 6 210 27.764 T 12-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 Alide_1189 fee8b1e9b4300933f1675fa424ea00e8 210 Gene3D G3DSA:2.50.20.10 21 209 5.5E-52 T 12-10-2018 Alide_1189 fee8b1e9b4300933f1675fa424ea00e8 210 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 11 207 1.2E-23 T 12-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 Alide_2890 e2c6d1744c708e90dd1dfbda0817bb13 261 Gene3D G3DSA:3.90.226.10 3 203 4.6E-66 T 12-10-2018 Alide_2890 e2c6d1744c708e90dd1dfbda0817bb13 261 SUPERFAMILY SSF52096 3 260 4.29E-80 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2890 e2c6d1744c708e90dd1dfbda0817bb13 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 260 6.6E-61 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_2890 e2c6d1744c708e90dd1dfbda0817bb13 261 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 102 122 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_2890 e2c6d1744c708e90dd1dfbda0817bb13 261 Gene3D G3DSA:1.10.12.10 204 261 2.4E-14 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_2033 cfb003e4b7e7e9232e93ac0f0c296195 297 Pfam PF12697 Alpha/beta hydrolase family 50 284 1.7E-17 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2033 cfb003e4b7e7e9232e93ac0f0c296195 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 119 132 5.2E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2033 cfb003e4b7e7e9232e93ac0f0c296195 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 74 89 5.2E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2033 cfb003e4b7e7e9232e93ac0f0c296195 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 133 146 5.2E-5 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_2033 cfb003e4b7e7e9232e93ac0f0c296195 297 SUPERFAMILY SSF53474 25 292 4.26E-45 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2033 cfb003e4b7e7e9232e93ac0f0c296195 297 PRINTS PR00412 Epoxide hydrolase signature 74 89 3.5E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_2033 cfb003e4b7e7e9232e93ac0f0c296195 297 PRINTS PR00412 Epoxide hydrolase signature 54 72 3.5E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_2033 cfb003e4b7e7e9232e93ac0f0c296195 297 PRINTS PR00412 Epoxide hydrolase signature 268 290 3.5E-8 T 12-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 Alide_2033 cfb003e4b7e7e9232e93ac0f0c296195 297 Gene3D G3DSA:3.40.50.1820 23 292 1.4E-40 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1010 e5e1f5a51d4187d31563d7ade00a9830 113 Gene3D G3DSA:3.30.10.10 46 112 2.5E-13 T 12-10-2018 Alide_1010 e5e1f5a51d4187d31563d7ade00a9830 113 Pfam PF11720 Peptidase inhibitor I78 family 49 113 1.4E-11 T 12-10-2018 IPR021719 Proteinase inhibitor I78 Alide_4084 e7b885b9c3729dae205da1d4739bf725 218 Pfam PF01323 DSBA-like thioredoxin domain 58 195 3.7E-13 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Alide_4084 e7b885b9c3729dae205da1d4739bf725 218 PIRSF PIRSF001488 12 217 1.4E-49 T 12-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL Alide_4084 e7b885b9c3729dae205da1d4739bf725 218 SUPERFAMILY SSF52833 33 211 4.86E-40 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_4084 e7b885b9c3729dae205da1d4739bf725 218 Gene3D G3DSA:3.40.30.10 23 217 4.2E-52 T 12-10-2018 Alide_0236 7ae99812e9acd6176152ea7dd6e04248 181 Pfam PF11000 Protein of unknown function (DUF2840) 32 178 1.9E-61 T 12-10-2018 IPR021263 Protein of unknown function DUF2840 Alide_0206 7a74362f3fa1639a34ba4f5357be89d4 309 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 4 282 17.004 T 12-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Alide_0206 7a74362f3fa1639a34ba4f5357be89d4 309 Gene3D G3DSA:1.20.120.920 92 291 2.9E-38 T 12-10-2018 Alide_0206 7a74362f3fa1639a34ba4f5357be89d4 309 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 8 244 3.0E-27 T 12-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Alide_0206 7a74362f3fa1639a34ba4f5357be89d4 309 TIGRFAM TIGR03639 cas1_NMENI: CRISPR-associated endonuclease Cas1, subtype II/NMENI 4 279 1.4E-71 T 12-10-2018 IPR019855 CRISPR-associated protein Cas1, NMENI subtype GO:0004520|GO:0043571|GO:0046872 Alide_0206 7a74362f3fa1639a34ba4f5357be89d4 309 Pfam PF01867 CRISPR associated protein Cas1 13 242 9.3E-28 T 12-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Alide_1054 bb0ef032260135e5fa055d5783c768f4 170 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 18 167 27.592 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1054 bb0ef032260135e5fa055d5783c768f4 170 SUPERFAMILY SSF54862 44 153 2.85E-25 T 12-10-2018 Alide_1054 bb0ef032260135e5fa055d5783c768f4 170 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 110 121 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_1054 bb0ef032260135e5fa055d5783c768f4 170 Pfam PF12838 4Fe-4S dicluster domain 70 123 2.6E-11 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_1054 bb0ef032260135e5fa055d5783c768f4 170 Gene3D G3DSA:3.30.70.3270 44 170 2.8E-37 T 12-10-2018 Alide_1054 bb0ef032260135e5fa055d5783c768f4 170 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 27 148 1.1E-44 T 12-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_2111 03c40dd8014292aa5bc8cc458607a774 221 SUPERFAMILY SSF53639 1 218 1.86E-47 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Alide_2111 03c40dd8014292aa5bc8cc458607a774 221 SMART SM01007 8 196 1.1E-47 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal Alide_2111 03c40dd8014292aa5bc8cc458607a774 221 Gene3D G3DSA:3.40.225.10 1 220 1.8E-45 T 12-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Alide_2111 03c40dd8014292aa5bc8cc458607a774 221 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 195 2.4E-39 T 12-10-2018 IPR001303 Class II aldolase/adducin N-terminal Alide_1036 bd79a77f316c3bf63d483836247c3b84 206 SUPERFAMILY SSF52540 3 189 8.8E-65 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1036 bd79a77f316c3bf63d483836247c3b84 206 SMART SM00072 4 186 1.3E-59 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Alide_1036 bd79a77f316c3bf63d483836247c3b84 206 Gene3D G3DSA:3.40.50.300 9 182 2.6E-65 T 12-10-2018 Alide_1036 bd79a77f316c3bf63d483836247c3b84 206 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 5 183 2.9E-70 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Alide_1036 bd79a77f316c3bf63d483836247c3b84 206 ProSitePatterns PS00856 Guanylate kinase-like signature. 39 56 - T 12-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 Alide_1036 bd79a77f316c3bf63d483836247c3b84 206 Pfam PF00625 Guanylate kinase 6 184 2.6E-48 T 12-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Alide_1036 bd79a77f316c3bf63d483836247c3b84 206 Gene3D G3DSA:3.30.63.10 36 95 2.6E-65 T 12-10-2018 Alide_1036 bd79a77f316c3bf63d483836247c3b84 206 Hamap MF_00328 Guanylate kinase [gmk]. 3 186 35.337 T 12-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Alide_1135 514eef1f01def743e935646f08ec1892 193 SUPERFAMILY SSF46785 1 58 1.12E-7 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1135 514eef1f01def743e935646f08ec1892 193 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 116 127 7.1E-8 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Alide_1135 514eef1f01def743e935646f08ec1892 193 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 105 115 7.1E-8 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Alide_1135 514eef1f01def743e935646f08ec1892 193 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 144 156 7.1E-8 T 12-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Alide_1135 514eef1f01def743e935646f08ec1892 193 Gene3D G3DSA:1.10.10.10 1 60 1.3E-5 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1135 514eef1f01def743e935646f08ec1892 193 Gene3D G3DSA:2.10.109.10 78 193 4.9E-32 T 12-10-2018 Alide_1135 514eef1f01def743e935646f08ec1892 193 Pfam PF00717 Peptidase S24-like 108 173 1.4E-13 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Alide_1135 514eef1f01def743e935646f08ec1892 193 SUPERFAMILY SSF51306 70 189 2.09E-29 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_0361 c8d402a3c6bbfdc6d8c87b6ba721592e 289 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 276 4.0E-42 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_0755 5b57f5f001e3e4bdebaa32215bb76526 347 SUPERFAMILY SSF55729 157 323 2.91E-14 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_0755 5b57f5f001e3e4bdebaa32215bb76526 347 Pfam PF13480 Acetyltransferase (GNAT) domain 169 312 4.8E-24 T 12-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Alide_3449 7b566dc3469d26607452ad6fd25e79c8 452 Pfam PF05193 Peptidase M16 inactive domain 202 384 1.4E-31 T 12-10-2018 IPR007863 Peptidase M16, C-terminal Alide_3449 7b566dc3469d26607452ad6fd25e79c8 452 SUPERFAMILY SSF63411 28 254 4.02E-35 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Alide_3449 7b566dc3469d26607452ad6fd25e79c8 452 Gene3D G3DSA:3.30.830.10 262 451 4.8E-55 T 12-10-2018 Alide_3449 7b566dc3469d26607452ad6fd25e79c8 452 SUPERFAMILY SSF63411 266 449 2.17E-46 T 12-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Alide_3449 7b566dc3469d26607452ad6fd25e79c8 452 Gene3D G3DSA:3.30.830.10 33 249 5.3E-44 T 12-10-2018 Alide_3337 0c11b168686e898948cde393ab3bb0a0 271 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 263 3.7E-78 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Alide_3337 0c11b168686e898948cde393ab3bb0a0 271 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 268 19.361 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Alide_3337 0c11b168686e898948cde393ab3bb0a0 271 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 267 1.1E-79 T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Alide_3337 0c11b168686e898948cde393ab3bb0a0 271 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 145 157 - T 12-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Alide_2755 c97eda5dab6eca18872ba9bc5d1d561c 45 SUPERFAMILY SSF52172 1 43 6.97E-7 T 12-10-2018 IPR011006 CheY-like superfamily Alide_2755 c97eda5dab6eca18872ba9bc5d1d561c 45 Gene3D G3DSA:3.40.50.2300 1 45 1.6E-8 T 12-10-2018 Alide_0643 cec7f8586c413c4a52c59b694b05fa23 292 Gene3D G3DSA:3.90.25.10 158 285 3.3E-111 T 12-10-2018 Alide_0643 cec7f8586c413c4a52c59b694b05fa23 292 SUPERFAMILY SSF51735 1 291 2.25E-99 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0643 cec7f8586c413c4a52c59b694b05fa23 292 Gene3D G3DSA:3.40.50.720 3 278 3.3E-111 T 12-10-2018 Alide_0643 cec7f8586c413c4a52c59b694b05fa23 292 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 3 290 1.9E-100 T 12-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Alide_0643 cec7f8586c413c4a52c59b694b05fa23 292 Pfam PF04321 RmlD substrate binding domain 1 291 2.7E-109 T 12-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Alide_0596 fbb5e744f449a6f7d4a64f4e36094c28 134 Gene3D G3DSA:3.10.180.10 9 133 6.4E-33 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0596 fbb5e744f449a6f7d4a64f4e36094c28 134 SUPERFAMILY SSF54593 4 133 5.64E-26 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0596 fbb5e744f449a6f7d4a64f4e36094c28 134 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 129 1.4E-10 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Alide_0105 7ef28a71267884eb98462c850ab09d1b 179 SUPERFAMILY SSF50475 12 164 5.89E-50 T 12-10-2018 Alide_0105 7ef28a71267884eb98462c850ab09d1b 179 Gene3D G3DSA:2.30.110.10 4 170 7.9E-48 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Alide_0105 7ef28a71267884eb98462c850ab09d1b 179 Pfam PF01613 Flavin reductase like domain 23 164 6.6E-34 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Alide_0105 7ef28a71267884eb98462c850ab09d1b 179 SMART SM00903 21 165 9.7E-58 T 12-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Alide_3155 d86a983b5da9bd38a6be03d4e89d467a 349 Gene3D G3DSA:3.40.50.2000 12 165 1.6E-20 T 12-10-2018 Alide_3155 d86a983b5da9bd38a6be03d4e89d467a 349 Gene3D G3DSA:3.40.50.2000 166 325 7.9E-28 T 12-10-2018 Alide_3155 d86a983b5da9bd38a6be03d4e89d467a 349 Pfam PF13477 Glycosyl transferase 4-like 4 130 6.2E-23 T 12-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Alide_3155 d86a983b5da9bd38a6be03d4e89d467a 349 SUPERFAMILY SSF53756 15 348 1.75E-54 T 12-10-2018 Alide_3155 d86a983b5da9bd38a6be03d4e89d467a 349 Pfam PF13692 Glycosyl transferases group 1 178 312 2.1E-19 T 12-10-2018 Alide_0699 70cdd20e3e2f6ec1294a25855da500d2 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 16 81 1.9E-7 T 12-10-2018 Alide_0699 70cdd20e3e2f6ec1294a25855da500d2 273 Gene3D G3DSA:3.40.50.1000 149 273 1.7E-7 T 12-10-2018 IPR023214 HAD superfamily Alide_0699 70cdd20e3e2f6ec1294a25855da500d2 273 Gene3D G3DSA:3.40.50.1000 12 125 1.7E-10 T 12-10-2018 IPR023214 HAD superfamily Alide_0699 70cdd20e3e2f6ec1294a25855da500d2 273 SUPERFAMILY SSF56784 12 266 1.5E-27 T 12-10-2018 IPR036412 HAD-like superfamily Alide_0699 70cdd20e3e2f6ec1294a25855da500d2 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 15 234 3.4E-18 T 12-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Alide_3651 dc01b7939323203421ac03bf93c30a34 593 SUPERFAMILY SSF50156 478 521 1.33E-5 T 12-10-2018 IPR036034 PDZ superfamily GO:0005515 Alide_3651 dc01b7939323203421ac03bf93c30a34 593 PIRSF PIRSF016493 3 591 2.0E-190 T 12-10-2018 IPR024191 Peptidase M61 Alide_3651 dc01b7939323203421ac03bf93c30a34 593 Gene3D G3DSA:2.60.40.3650 7 180 1.1E-54 T 12-10-2018 Alide_3651 dc01b7939323203421ac03bf93c30a34 593 Gene3D G3DSA:1.10.390.60 182 458 8.6E-106 T 12-10-2018 Alide_3651 dc01b7939323203421ac03bf93c30a34 593 Pfam PF05299 M61 glycyl aminopeptidase 282 398 8.4E-50 T 12-10-2018 IPR007963 Peptidase M61, catalytic domain Alide_3651 dc01b7939323203421ac03bf93c30a34 593 Gene3D G3DSA:2.30.42.10 485 591 1.3E-8 T 12-10-2018 Alide_3651 dc01b7939323203421ac03bf93c30a34 593 SUPERFAMILY SSF55486 221 458 3.95E-17 T 12-10-2018 Alide_3526 4a93de4b2ab1b657fc7c6293f777ffbd 449 Pfam PF03972 MmgE/PrpD family 12 407 7.3E-75 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_3526 4a93de4b2ab1b657fc7c6293f777ffbd 449 Gene3D G3DSA:3.30.1330.120 256 386 1.1E-94 T 12-10-2018 Alide_3526 4a93de4b2ab1b657fc7c6293f777ffbd 449 Gene3D G3DSA:1.10.4100.10 28 404 1.1E-94 T 12-10-2018 Alide_3526 4a93de4b2ab1b657fc7c6293f777ffbd 449 SUPERFAMILY SSF103378 9 407 3.79E-76 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_2693 b393abcdaf861714abd8a0c96073c7b2 207 Gene3D G3DSA:1.10.443.10 21 193 7.4E-27 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_2693 b393abcdaf861714abd8a0c96073c7b2 207 Pfam PF00589 Phage integrase family 41 191 1.3E-16 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_2693 b393abcdaf861714abd8a0c96073c7b2 207 SUPERFAMILY SSF56349 21 204 1.24E-36 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_2933 01aba54728f6e721fe1aec43a1cc5a3c 393 Gene3D G3DSA:3.40.50.10540 4 387 8.8E-114 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2933 01aba54728f6e721fe1aec43a1cc5a3c 393 Gene3D G3DSA:3.30.1540.10 229 320 8.8E-114 T 12-10-2018 Alide_2933 01aba54728f6e721fe1aec43a1cc5a3c 393 Pfam PF02515 CoA-transferase family III 4 370 3.4E-105 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2933 01aba54728f6e721fe1aec43a1cc5a3c 393 SUPERFAMILY SSF89796 1 393 7.46E-116 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2005 14fd3701fe6b51cd5b7bc42612827f15 95 SUPERFAMILY SSF54292 6 92 1.44E-24 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_2005 14fd3701fe6b51cd5b7bc42612827f15 95 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 15 84 1.1E-12 T 12-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Alide_2005 14fd3701fe6b51cd5b7bc42612827f15 95 Gene3D G3DSA:3.10.20.30 4 94 2.8E-23 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_3424 41cf96788d1b0ac35cffc29ba955c23f 293 Gene3D G3DSA:3.20.20.70 133 280 4.8E-106 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3424 41cf96788d1b0ac35cffc29ba955c23f 293 SUPERFAMILY SSF51690 123 290 4.32E-57 T 12-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Alide_3424 41cf96788d1b0ac35cffc29ba955c23f 293 Gene3D G3DSA:3.90.1170.20 25 287 4.8E-106 T 12-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 Alide_3424 41cf96788d1b0ac35cffc29ba955c23f 293 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 33 121 4.5E-27 T 12-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Alide_3424 41cf96788d1b0ac35cffc29ba955c23f 293 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 25 288 1.3E-93 T 12-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 Alide_3424 41cf96788d1b0ac35cffc29ba955c23f 293 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 123 288 2.1E-56 T 12-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 Alide_3424 41cf96788d1b0ac35cffc29ba955c23f 293 SUPERFAMILY SSF54675 20 121 5.42E-31 T 12-10-2018 Alide_3424 41cf96788d1b0ac35cffc29ba955c23f 293 PIRSF PIRSF006250 15 292 2.0E-92 T 12-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 Alide_4361 1dfd45612a8644f11c7b745ac9897ac3 107 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 48 103 3.3E-5 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Alide_4361 1dfd45612a8644f11c7b745ac9897ac3 107 Pfam PF00460 Flagella basal body rod protein 14 41 2.1E-5 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Alide_4092 ef24a1a37eabe1fb14fd7f4f0aaf372d 310 Pfam PF03466 LysR substrate binding domain 91 297 4.8E-43 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4092 ef24a1a37eabe1fb14fd7f4f0aaf372d 310 Gene3D G3DSA:3.40.190.290 91 298 3.9E-65 T 12-10-2018 Alide_4092 ef24a1a37eabe1fb14fd7f4f0aaf372d 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.3E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4092 ef24a1a37eabe1fb14fd7f4f0aaf372d 310 SUPERFAMILY SSF46785 4 111 1.77E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4092 ef24a1a37eabe1fb14fd7f4f0aaf372d 310 SUPERFAMILY SSF53850 91 301 5.43E-45 T 12-10-2018 Alide_4092 ef24a1a37eabe1fb14fd7f4f0aaf372d 310 Gene3D G3DSA:1.10.10.10 2 87 1.6E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3304 b1d42ea2c723a0ec35edfc80d5043da6 321 Gene3D G3DSA:3.40.190.150 26 311 1.3E-107 T 12-10-2018 Alide_3304 b1d42ea2c723a0ec35edfc80d5043da6 321 Gene3D G3DSA:3.40.190.10 123 246 1.3E-107 T 12-10-2018 Alide_3304 b1d42ea2c723a0ec35edfc80d5043da6 321 PIRSF PIRSF017082 1 320 1.5E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3304 b1d42ea2c723a0ec35edfc80d5043da6 321 SUPERFAMILY SSF53850 76 284 9.2E-13 T 12-10-2018 Alide_3304 b1d42ea2c723a0ec35edfc80d5043da6 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 317 5.6E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0512 9490c7d89981f37a28b8fda401259a37 275 Pfam PF00639 PPIC-type PPIASE domain 123 217 4.5E-18 T 12-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Alide_0512 9490c7d89981f37a28b8fda401259a37 275 SUPERFAMILY SSF54534 116 221 1.64E-20 T 12-10-2018 Alide_0512 9490c7d89981f37a28b8fda401259a37 275 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 158 178 - T 12-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 Alide_0512 9490c7d89981f37a28b8fda401259a37 275 SUPERFAMILY SSF109998 36 133 9.02E-5 T 12-10-2018 IPR027304 Trigger factor/SurA domain superfamily Alide_0512 9490c7d89981f37a28b8fda401259a37 275 Gene3D G3DSA:1.10.4030.30 80 231 1.8E-20 T 12-10-2018 Alide_0512 9490c7d89981f37a28b8fda401259a37 275 Gene3D G3DSA:3.10.50.40 117 221 1.8E-20 T 12-10-2018 Alide_0633 335af9ad7743ea459ce7a20ab056eca8 721 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 4 719 5.2E-190 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0633 335af9ad7743ea459ce7a20ab056eca8 721 Pfam PF05746 DALR anticodon binding domain 613 711 5.9E-8 T 12-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Alide_0633 335af9ad7743ea459ce7a20ab056eca8 721 SUPERFAMILY SSF109604 353 523 1.15E-14 T 12-10-2018 Alide_0633 335af9ad7743ea459ce7a20ab056eca8 721 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 582 1.8E-199 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0633 335af9ad7743ea459ce7a20ab056eca8 721 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 8 21 2.2E-21 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0633 335af9ad7743ea459ce7a20ab056eca8 721 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 53 65 2.2E-21 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0633 335af9ad7743ea459ce7a20ab056eca8 721 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 259 274 2.2E-21 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0633 335af9ad7743ea459ce7a20ab056eca8 721 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 427 446 2.2E-21 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_0633 335af9ad7743ea459ce7a20ab056eca8 721 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 4 719 23.502 T 12-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Alide_3552 5b8fb2c6fa1b4c2067aac44acc2d89f7 105 SUPERFAMILY SSF46689 26 99 4.78E-7 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3552 5b8fb2c6fa1b4c2067aac44acc2d89f7 105 Pfam PF08765 Mor transcription activator family 31 100 6.6E-7 T 12-10-2018 IPR014875 Mor transcription activator Alide_1410 778af13b69529547120a019ecdedd014 327 Gene3D G3DSA:3.40.190.10 129 252 5.1E-106 T 12-10-2018 Alide_1410 778af13b69529547120a019ecdedd014 327 PIRSF PIRSF017082 1 327 5.2E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1410 778af13b69529547120a019ecdedd014 327 Gene3D G3DSA:3.40.190.150 31 317 5.1E-106 T 12-10-2018 Alide_1410 778af13b69529547120a019ecdedd014 327 SUPERFAMILY SSF53850 114 289 1.76E-13 T 12-10-2018 Alide_1410 778af13b69529547120a019ecdedd014 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 323 7.4E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3070 1f06d399e886b5b97f4d76279613f550 406 Gene3D G3DSA:3.30.9.30 37 369 3.2E-101 T 12-10-2018 Alide_3070 1f06d399e886b5b97f4d76279613f550 406 Gene3D G3DSA:3.50.50.60 5 362 3.2E-101 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3070 1f06d399e886b5b97f4d76279613f550 406 SUPERFAMILY SSF51905 3 388 3.98E-55 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3070 1f06d399e886b5b97f4d76279613f550 406 SUPERFAMILY SSF54373 182 286 2.2E-12 T 12-10-2018 Alide_3070 1f06d399e886b5b97f4d76279613f550 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.2E-15 T 12-10-2018 Alide_3070 1f06d399e886b5b97f4d76279613f550 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 312 328 1.2E-15 T 12-10-2018 Alide_3070 1f06d399e886b5b97f4d76279613f550 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 312 1.2E-15 T 12-10-2018 Alide_3070 1f06d399e886b5b97f4d76279613f550 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 1.2E-15 T 12-10-2018 Alide_3070 1f06d399e886b5b97f4d76279613f550 406 Pfam PF01494 FAD binding domain 4 335 6.1E-16 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 Alide_1188 5994853b8bf8f2a52b996d1f3c8df97b 778 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 24 206 8.3E-48 T 12-10-2018 IPR025199 DNA translocase FtsK, 4TM region Alide_1188 5994853b8bf8f2a52b996d1f3c8df97b 778 SUPERFAMILY SSF46785 711 775 3.67E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1188 5994853b8bf8f2a52b996d1f3c8df97b 778 Pfam PF09397 Ftsk gamma domain 713 773 3.1E-25 T 12-10-2018 IPR018541 FtsK gamma domain Alide_1188 5994853b8bf8f2a52b996d1f3c8df97b 778 Gene3D G3DSA:3.30.980.40 288 392 4.3E-33 T 12-10-2018 Alide_1188 5994853b8bf8f2a52b996d1f3c8df97b 778 SMART SM00843 711 776 9.5E-35 T 12-10-2018 IPR018541 FtsK gamma domain Alide_1188 5994853b8bf8f2a52b996d1f3c8df97b 778 Pfam PF01580 FtsK/SpoIIIE family 396 605 6.1E-65 T 12-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Alide_1188 5994853b8bf8f2a52b996d1f3c8df97b 778 SUPERFAMILY SSF52540 370 677 5.84E-50 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1188 5994853b8bf8f2a52b996d1f3c8df97b 778 Gene3D G3DSA:3.40.50.300 393 691 9.8E-115 T 12-10-2018 Alide_1188 5994853b8bf8f2a52b996d1f3c8df97b 778 Gene3D G3DSA:1.10.10.10 707 772 7.9E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2271 f31d9ed33a8553c78daa0182c050b34a 387 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 194 208 - T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_2271 f31d9ed33a8553c78daa0182c050b34a 387 Pfam PF00437 Type II/IV secretion system protein 10 272 9.1E-39 T 12-10-2018 IPR001482 Type II/IV secretion system protein Alide_2271 f31d9ed33a8553c78daa0182c050b34a 387 SUPERFAMILY SSF52540 5 335 1.17E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2271 f31d9ed33a8553c78daa0182c050b34a 387 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 4 343 4.8E-120 T 12-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 Alide_2271 f31d9ed33a8553c78daa0182c050b34a 387 Gene3D G3DSA:3.30.450.90 1 101 4.6E-25 T 12-10-2018 Alide_2271 f31d9ed33a8553c78daa0182c050b34a 387 Gene3D G3DSA:3.40.50.300 102 356 9.3E-82 T 12-10-2018 Alide_2680 dcec904da1ad2bfa90690266121ade20 153 Gene3D G3DSA:1.20.120.1630 7 153 2.2E-24 T 12-10-2018 Alide_2680 dcec904da1ad2bfa90690266121ade20 153 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 107 152 2.0E-8 T 12-10-2018 Alide_2680 dcec904da1ad2bfa90690266121ade20 153 Pfam PF04191 Phospholipid methyltransferase 39 140 2.3E-14 T 12-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 Alide_2368 c10e986d51b1ae0eb13ad12206359f94 334 Pfam PF02780 Transketolase, C-terminal domain 202 325 1.7E-24 T 12-10-2018 IPR033248 Transketolase, C-terminal domain Alide_2368 c10e986d51b1ae0eb13ad12206359f94 334 SUPERFAMILY SSF52922 196 333 1.7E-29 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2368 c10e986d51b1ae0eb13ad12206359f94 334 SUPERFAMILY SSF52518 7 190 1.52E-47 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2368 c10e986d51b1ae0eb13ad12206359f94 334 Pfam PF02779 Transketolase, pyrimidine binding domain 32 189 2.0E-34 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_2368 c10e986d51b1ae0eb13ad12206359f94 334 Gene3D G3DSA:3.40.50.920 202 333 7.6E-31 T 12-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Alide_2368 c10e986d51b1ae0eb13ad12206359f94 334 SMART SM00861 26 190 6.8E-43 T 12-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Alide_2368 c10e986d51b1ae0eb13ad12206359f94 334 Gene3D G3DSA:3.40.50.970 27 196 7.1E-52 T 12-10-2018 Alide_2350 9cec2063f43ac780fac3452ce54abbf1 86 Gene3D G3DSA:1.20.58.1000 1 86 2.5E-27 T 12-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily Alide_2350 9cec2063f43ac780fac3452ce54abbf1 86 Pfam PF02583 Metal-sensitive transcriptional repressor 7 82 1.6E-21 T 12-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 Alide_0942 eeaf2ec38262140220a3e3bc98ab48da 300 Pfam PF05013 N-formylglutamate amidohydrolase 24 259 2.0E-62 T 12-10-2018 IPR007709 N-formylglutamate amidohydrolase Alide_0942 eeaf2ec38262140220a3e3bc98ab48da 300 SUPERFAMILY SSF53187 13 290 3.04E-82 T 12-10-2018 Alide_0942 eeaf2ec38262140220a3e3bc98ab48da 300 Gene3D G3DSA:3.40.630.40 4 292 2.5E-102 T 12-10-2018 Alide_3623 57e279d277348ca131fc8fec4c8d38ee 246 SMART SM00563 68 180 3.8E-32 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Alide_3623 57e279d277348ca131fc8fec4c8d38ee 246 SUPERFAMILY SSF69593 47 192 4.18E-29 T 12-10-2018 Alide_3623 57e279d277348ca131fc8fec4c8d38ee 246 Pfam PF01553 Acyltransferase 63 177 4.1E-23 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Alide_2720 e2d984ff1cff9d91d7195fb158f177bd 557 SUPERFAMILY SSF110849 37 159 1.13E-11 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Alide_2720 e2d984ff1cff9d91d7195fb158f177bd 557 TIGRFAM TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein 28 290 3.9E-120 T 12-10-2018 IPR022304 Integrating conjugative element, PFGI-1, ParB Alide_4466 b683daecb2f45f696747114f92186ddc 329 Pfam PF00892 EamA-like transporter family 30 163 9.9E-18 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_4466 b683daecb2f45f696747114f92186ddc 329 Pfam PF00892 EamA-like transporter family 176 309 6.5E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_4466 b683daecb2f45f696747114f92186ddc 329 SUPERFAMILY SSF103481 210 314 3.79E-9 T 12-10-2018 Alide_4466 b683daecb2f45f696747114f92186ddc 329 SUPERFAMILY SSF103481 65 166 1.2E-12 T 12-10-2018 Alide_2606 a90b45b839715cfa60080b88438fa02e 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 3 422 3.1E-191 T 12-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 Alide_2606 a90b45b839715cfa60080b88438fa02e 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 422 5.7E-141 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_2606 a90b45b839715cfa60080b88438fa02e 425 Gene3D G3DSA:3.40.640.10 1 285 1.4E-103 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2606 a90b45b839715cfa60080b88438fa02e 425 Gene3D G3DSA:3.90.1150.10 289 425 1.1E-49 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2606 a90b45b839715cfa60080b88438fa02e 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_2606 a90b45b839715cfa60080b88438fa02e 425 PIRSF PIRSF001434 1 425 4.8E-132 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_2606 a90b45b839715cfa60080b88438fa02e 425 SUPERFAMILY SSF53383 1 423 1.08E-130 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2380 8e9b959fc1ec5daf46a8c327ead11366 259 Pfam PF10001 Uncharacterized protein conserved in bacteria (DUF2242) 70 190 1.3E-51 T 12-10-2018 IPR018718 Protein of unknown function DUF2242 Alide_0272 6cb23695fe8647d9689b8a663ff199ef 476 SUPERFAMILY SSF53720 2 472 2.09E-150 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_0272 6cb23695fe8647d9689b8a663ff199ef 476 Gene3D G3DSA:3.40.605.10 17 470 3.4E-157 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_0272 6cb23695fe8647d9689b8a663ff199ef 476 Gene3D G3DSA:3.40.309.10 253 442 3.4E-157 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_0272 6cb23695fe8647d9689b8a663ff199ef 476 Pfam PF00171 Aldehyde dehydrogenase family 14 470 3.2E-154 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_1739 f6d8cc37aa0f32c282754e7eec27c720 108 Gene3D G3DSA:3.40.30.10 6 107 2.4E-22 T 12-10-2018 Alide_1739 f6d8cc37aa0f32c282754e7eec27c720 108 Pfam PF00085 Thioredoxin 14 103 5.1E-15 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 Alide_1739 f6d8cc37aa0f32c282754e7eec27c720 108 SUPERFAMILY SSF52833 11 104 4.79E-21 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 PIRSF PIRSF002191 1 128 1.6E-50 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 ProSitePatterns PS01015 Ribosomal protein L19 signature. 88 103 - T 12-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 PRINTS PR00061 Ribosomal protein L19 signature 6 35 5.1E-37 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 PRINTS PR00061 Ribosomal protein L19 signature 36 65 5.1E-37 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 PRINTS PR00061 Ribosomal protein L19 signature 90 115 5.1E-37 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 116 30.664 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 Gene3D G3DSA:2.30.30.790 5 119 1.9E-15 T 12-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 SUPERFAMILY SSF50104 1 117 4.71E-45 T 12-10-2018 IPR008991 Translation protein SH3-like domain superfamily Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 Pfam PF01245 Ribosomal protein L19 3 115 4.0E-47 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1206 ff9bb43e8c779aa0365e3e938a33adba 128 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 115 1.4E-49 T 12-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0935 c78b635f060999ffa958a15ef84e3928 110 Pfam PF00462 Glutaredoxin 17 84 4.0E-18 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Alide_0935 c78b635f060999ffa958a15ef84e3928 110 SUPERFAMILY SSF52833 1 104 3.75E-34 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0935 c78b635f060999ffa958a15ef84e3928 110 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 103 8.2E-46 T 12-10-2018 IPR004480 Monothiol glutaredoxin-related Alide_0935 c78b635f060999ffa958a15ef84e3928 110 Gene3D G3DSA:3.40.30.10 7 105 3.6E-33 T 12-10-2018 Alide_0935 c78b635f060999ffa958a15ef84e3928 110 PIRSF PIRSF005894 1 110 3.7E-48 T 12-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 Alide_3140 dea9e5f8765acbaf1156f9270e122a69 41 Pfam PF08085 Entericidin EcnA/B family 20 40 2.7E-10 T 12-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 Alide_3727 0239f8039e06c90b124491659d566fe1 269 Pfam PF13487 HD domain 113 176 1.3E-19 T 12-10-2018 Alide_3727 0239f8039e06c90b124491659d566fe1 269 SUPERFAMILY SSF109604 44 224 3.11E-38 T 12-10-2018 Alide_3727 0239f8039e06c90b124491659d566fe1 269 Gene3D G3DSA:1.10.3210.10 36 239 5.3E-69 T 12-10-2018 Alide_3727 0239f8039e06c90b124491659d566fe1 269 SMART SM00471 58 195 5.5E-8 T 12-10-2018 IPR003607 HD/PDEase domain Alide_4429 59ac25edf7e8b64b3ff2582c81f4226b 746 Pfam PF03432 Relaxase/Mobilisation nuclease domain 12 251 9.9E-64 T 12-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 Alide_2737 b4932d03c95e2a044967b287d6ca89cb 113 Gene3D G3DSA:2.40.50.320 41 113 1.5E-27 T 12-10-2018 Alide_2737 b4932d03c95e2a044967b287d6ca89cb 113 Pfam PF11604 Copper binding periplasmic protein CusF 45 111 6.1E-29 T 12-10-2018 IPR021647 Copper binding periplasmic protein CusF Alide_3754 35a99875deee2fcf71faadd6b0b62e1d 324 Pfam PF03060 Nitronate monooxygenase 3 308 5.1E-63 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Alide_3754 35a99875deee2fcf71faadd6b0b62e1d 324 SUPERFAMILY SSF51412 1 315 1.96E-71 T 12-10-2018 Alide_3754 35a99875deee2fcf71faadd6b0b62e1d 324 Gene3D G3DSA:3.20.20.70 1 324 8.7E-122 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1840 7c2efbd66f8c7a03ed9982ef0f7a20d7 617 Gene3D G3DSA:1.10.443.10 210 401 2.5E-15 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_1840 7c2efbd66f8c7a03ed9982ef0f7a20d7 617 SUPERFAMILY SSF56349 98 400 3.53E-49 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_1840 7c2efbd66f8c7a03ed9982ef0f7a20d7 617 Pfam PF13356 Arm DNA-binding domain 3 87 1.1E-16 T 12-10-2018 IPR025166 Integrase, DNA-binding domain Alide_1840 7c2efbd66f8c7a03ed9982ef0f7a20d7 617 Pfam PF00589 Phage integrase family 211 390 1.4E-18 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1840 7c2efbd66f8c7a03ed9982ef0f7a20d7 617 Gene3D G3DSA:3.30.160.390 1 88 9.5E-29 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Alide_1840 7c2efbd66f8c7a03ed9982ef0f7a20d7 617 Gene3D G3DSA:1.10.150.130 92 209 5.3E-23 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_2527 d9264581dea485c069acf0e521a3517a 477 Gene3D G3DSA:1.20.1720.10 18 212 1.3E-21 T 12-10-2018 Alide_2527 d9264581dea485c069acf0e521a3517a 477 Pfam PF07690 Major Facilitator Superfamily 28 411 2.7E-28 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_2527 d9264581dea485c069acf0e521a3517a 477 Gene3D G3DSA:1.20.1250.20 268 475 3.9E-8 T 12-10-2018 Alide_2527 d9264581dea485c069acf0e521a3517a 477 SUPERFAMILY SSF103473 6 471 9.16E-43 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1199 155476d44b5ff3db0f6a761792e1e3ac 215 SUPERFAMILY SSF109755 17 207 1.57E-6 T 12-10-2018 Alide_1199 155476d44b5ff3db0f6a761792e1e3ac 215 Pfam PF01865 Protein of unknown function DUF47 4 213 2.4E-32 T 12-10-2018 IPR018445 Putative phosphate transport regulator Alide_1199 155476d44b5ff3db0f6a761792e1e3ac 215 Gene3D G3DSA:1.20.58.220 13 215 7.2E-59 T 12-10-2018 IPR038078 PhoU-like domain superfamily Alide_0943 2a26dfe8372a47f9b769148449abce28 810 Gene3D G3DSA:2.30.30.60 645 693 7.7E-11 T 12-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Alide_0943 2a26dfe8372a47f9b769148449abce28 810 Gene3D G3DSA:3.30.70.100 699 790 7.6E-8 T 12-10-2018 Alide_0943 2a26dfe8372a47f9b769148449abce28 810 Pfam PF12607 Protein of unknown function (DUF3772) 144 205 7.1E-17 T 12-10-2018 IPR022249 Domain of unknown function DUF3772 Alide_0943 2a26dfe8372a47f9b769148449abce28 810 SUPERFAMILY SSF50182 630 695 2.19E-15 T 12-10-2018 IPR010920 LSM domain superfamily Alide_0943 2a26dfe8372a47f9b769148449abce28 810 Pfam PF00924 Mechanosensitive ion channel 589 785 2.1E-40 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Alide_0943 2a26dfe8372a47f9b769148449abce28 810 SUPERFAMILY SSF82861 546 628 5.23E-10 T 12-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Alide_0943 2a26dfe8372a47f9b769148449abce28 810 SUPERFAMILY SSF82689 701 792 5.23E-12 T 12-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Alide_3072 558d3cf5add967021b3470a7318807f8 98 Pfam PF00816 H-NS histone family 7 91 7.1E-27 T 12-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 Alide_3072 558d3cf5add967021b3470a7318807f8 98 SUPERFAMILY SSF81273 64 95 6.28E-9 T 12-10-2018 Alide_3072 558d3cf5add967021b3470a7318807f8 98 Gene3D G3DSA:3.30.160.420 69 93 7.1E-13 T 12-10-2018 Alide_3072 558d3cf5add967021b3470a7318807f8 98 SMART SM00528 59 98 1.9E-6 T 12-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 Alide_0522 fd52ac8645e69fd152fa371f943aed5c 343 PIRSF PIRSF017082 10 341 1.3E-55 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0522 fd52ac8645e69fd152fa371f943aed5c 343 Gene3D G3DSA:3.40.190.10 142 264 4.4E-73 T 12-10-2018 Alide_0522 fd52ac8645e69fd152fa371f943aed5c 343 Gene3D G3DSA:3.40.190.150 44 332 4.4E-73 T 12-10-2018 Alide_0522 fd52ac8645e69fd152fa371f943aed5c 343 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 64 339 7.4E-52 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0522 fd52ac8645e69fd152fa371f943aed5c 343 SUPERFAMILY SSF53850 133 293 8.07E-6 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 Pfam PF01019 Gamma-glutamyltranspeptidase 40 530 1.5E-155 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 377 395 1.7E-34 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 114 132 1.7E-34 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 259 278 1.7E-34 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 353 371 1.7E-34 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 132 151 1.7E-34 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 230 246 1.7E-34 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 408 423 1.7E-34 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 47 72 1.7E-34 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 Gene3D G3DSA:1.10.246.130 247 356 1.6E-21 T 12-10-2018 Alide_3986 379647029644206ce277893fab81b345 535 SUPERFAMILY SSF56235 12 535 8.49E-169 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_3986 379647029644206ce277893fab81b345 535 Gene3D G3DSA:3.60.20.40 357 535 1.4E-65 T 12-10-2018 Alide_1126 1a1cff2690b3d9b81ca82783bac48b10 198 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 75 88 - T 12-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 Alide_1126 1a1cff2690b3d9b81ca82783bac48b10 198 SMART SM00852 14 159 4.4E-25 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_1126 1a1cff2690b3d9b81ca82783bac48b10 198 Gene3D G3DSA:3.40.980.10 9 198 2.9E-61 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily Alide_1126 1a1cff2690b3d9b81ca82783bac48b10 198 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 11 153 1.9E-40 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_1126 1a1cff2690b3d9b81ca82783bac48b10 198 SUPERFAMILY SSF53218 10 195 1.44E-48 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily Alide_1126 1a1cff2690b3d9b81ca82783bac48b10 198 Pfam PF00994 Probable molybdopterin binding domain 14 153 2.6E-31 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_2923 798da81e689dbc0c32dee059991a41a7 248 SUPERFAMILY SSF52540 12 244 1.7E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2923 798da81e689dbc0c32dee059991a41a7 248 Gene3D G3DSA:3.40.50.300 9 246 6.6E-58 T 12-10-2018 Alide_2923 798da81e689dbc0c32dee059991a41a7 248 Pfam PF00005 ABC transporter 28 173 4.0E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2923 798da81e689dbc0c32dee059991a41a7 248 SMART SM00382 37 222 2.6E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2923 798da81e689dbc0c32dee059991a41a7 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 SUPERFAMILY SSF53671 1 301 1.44E-101 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 129 140 2.0E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 47 66 2.0E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 254 263 2.0E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 266 289 2.0E-26 T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 47 54 - T 12-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 Gene3D G3DSA:3.40.50.1370 3 298 9.2E-109 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 141 1.6E-45 T 12-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 149 299 1.7E-48 T 12-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 1 302 75.434 T 12-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 218 228 2.1E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 45 59 2.1E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 78 91 2.1E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 280 291 2.1E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 118 132 2.1E-29 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 2 301 2.6E-108 T 12-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Alide_1389 4a512600c2940308228f369f9a8bd3f4 306 Gene3D G3DSA:3.40.50.1370 132 288 9.2E-109 T 12-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Alide_2627 c2d866084235c21baae6899e9e9a091f 332 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 19 324 4.4E-95 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Alide_2627 c2d866084235c21baae6899e9e9a091f 332 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 25 301 4.1E-57 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Alide_2627 c2d866084235c21baae6899e9e9a091f 332 SUPERFAMILY SSF52540 52 166 1.12E-10 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2627 c2d866084235c21baae6899e9e9a091f 332 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 7 329 35.26 T 12-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Alide_3187 d2ee4d2c276a25501ced28d12a6c01b1 343 PIRSF PIRSF002465 1 333 6.2E-124 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Alide_3187 d2ee4d2c276a25501ced28d12a6c01b1 343 Gene3D G3DSA:3.40.718.10 1 339 4.4E-121 T 12-10-2018 Alide_3187 d2ee4d2c276a25501ced28d12a6c01b1 343 SUPERFAMILY SSF53659 1 329 3.41E-102 T 12-10-2018 Alide_3187 d2ee4d2c276a25501ced28d12a6c01b1 343 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 3 330 2.4E-105 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Alide_3187 d2ee4d2c276a25501ced28d12a6c01b1 343 Pfam PF02504 Fatty acid synthesis protein 3 320 6.8E-100 T 12-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 Alide_3187 d2ee4d2c276a25501ced28d12a6c01b1 343 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 335 151.343 T 12-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Alide_2931 3d30d8b0506d44957209103e5589d9f9 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2931 3d30d8b0506d44957209103e5589d9f9 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2931 3d30d8b0506d44957209103e5589d9f9 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.6E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2931 3d30d8b0506d44957209103e5589d9f9 309 Pfam PF03466 LysR substrate binding domain 88 290 1.9E-42 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2931 3d30d8b0506d44957209103e5589d9f9 309 SUPERFAMILY SSF46785 2 86 5.99E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2931 3d30d8b0506d44957209103e5589d9f9 309 Gene3D G3DSA:1.10.10.10 1 88 4.0E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2931 3d30d8b0506d44957209103e5589d9f9 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.9E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2931 3d30d8b0506d44957209103e5589d9f9 309 Gene3D G3DSA:3.40.190.290 91 299 5.8E-42 T 12-10-2018 Alide_2931 3d30d8b0506d44957209103e5589d9f9 309 SUPERFAMILY SSF53850 87 296 3.41E-39 T 12-10-2018 Alide_2782 76958e5df4f3f70ae59a8e6d1202e9df 279 Gene3D G3DSA:1.10.3720.10 79 273 4.5E-21 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2782 76958e5df4f3f70ae59a8e6d1202e9df 279 SUPERFAMILY SSF161098 82 265 5.1E-28 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2782 76958e5df4f3f70ae59a8e6d1202e9df 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 273 2.2E-25 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0881 32db4389a162462339999df4a5e46342 398 Pfam PF12138 Spherulation-specific family 4 148 384 2.3E-40 T 12-10-2018 IPR021986 Spherulation-specific family 4 Alide_0419 633e42d85bfd6d476ed0a9479b562eac 65 ProSitePatterns PS00579 Ribosomal protein L29 signature. 40 54 - T 12-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0419 633e42d85bfd6d476ed0a9479b562eac 65 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 2 61 16.415 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0419 633e42d85bfd6d476ed0a9479b562eac 65 TIGRFAM TIGR00012 L29: ribosomal protein uL29 6 61 9.2E-17 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0419 633e42d85bfd6d476ed0a9479b562eac 65 Pfam PF00831 Ribosomal L29 protein 5 61 2.1E-19 T 12-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0419 633e42d85bfd6d476ed0a9479b562eac 65 Gene3D G3DSA:1.10.287.310 2 64 6.2E-22 T 12-10-2018 Alide_0419 633e42d85bfd6d476ed0a9479b562eac 65 SUPERFAMILY SSF46561 2 63 3.92E-18 T 12-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 Pfam PF12698 ABC-2 family transporter protein 574 906 1.1E-36 T 12-10-2018 Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 Gene3D G3DSA:3.40.50.300 268 513 2.0E-64 T 12-10-2018 Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 SMART SM00382 299 484 2.8E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 SMART SM00382 34 251 2.7E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 Pfam PF00005 ABC transporter 27 172 1.5E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 Gene3D G3DSA:3.40.50.300 1 246 1.7E-61 T 12-10-2018 Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 SUPERFAMILY SSF52540 270 496 2.61E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 Pfam PF00005 ABC transporter 291 434 9.3E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4066 4f7db42df78b9511ebc3d9960b712496 915 SUPERFAMILY SSF52540 8 236 1.82E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3437 53c6afe1759f1a3e4afeaf115b0dee09 135 SMART SM00450 34 131 4.7E-18 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_3437 53c6afe1759f1a3e4afeaf115b0dee09 135 SUPERFAMILY SSF52821 14 134 1.09E-32 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_3437 53c6afe1759f1a3e4afeaf115b0dee09 135 Gene3D G3DSA:3.40.250.10 32 135 3.4E-27 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_3437 53c6afe1759f1a3e4afeaf115b0dee09 135 Pfam PF00581 Rhodanese-like domain 35 127 3.7E-15 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_4220 a4cda5f93d7895f6e519d213f8b13a67 482 Gene3D G3DSA:3.40.309.10 258 453 5.4E-146 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_4220 a4cda5f93d7895f6e519d213f8b13a67 482 Gene3D G3DSA:3.40.605.10 34 257 5.4E-146 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_4220 a4cda5f93d7895f6e519d213f8b13a67 482 Pfam PF00171 Aldehyde dehydrogenase family 27 477 2.4E-145 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_4220 a4cda5f93d7895f6e519d213f8b13a67 482 TIGRFAM TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase 11 482 2.5E-266 T 12-10-2018 IPR017656 Putative phosphonoacetaldehyde dehydrogenase KEGG: 00430+1.2.1.73|MetaCyc: PWY-5982 Alide_4220 a4cda5f93d7895f6e519d213f8b13a67 482 SUPERFAMILY SSF53720 10 481 1.06E-140 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_4220 a4cda5f93d7895f6e519d213f8b13a67 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 255 262 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_4220 a4cda5f93d7895f6e519d213f8b13a67 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 283 294 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_0262 e7c536ed540d202a7695d0e798c91471 512 Pfam PF00005 ABC transporter 291 440 8.3E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0262 e7c536ed540d202a7695d0e798c91471 512 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 222 244 1.0E-8 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_0262 e7c536ed540d202a7695d0e798c91471 512 ProSitePatterns PS00211 ABC transporters family signature. 413 427 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0262 e7c536ed540d202a7695d0e798c91471 512 Pfam PF00005 ABC transporter 20 173 8.5E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0262 e7c536ed540d202a7695d0e798c91471 512 SUPERFAMILY SSF52540 274 508 2.61E-55 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0262 e7c536ed540d202a7695d0e798c91471 512 Gene3D G3DSA:3.40.50.300 272 512 7.3E-56 T 12-10-2018 Alide_0262 e7c536ed540d202a7695d0e798c91471 512 Gene3D G3DSA:3.40.50.300 3 255 2.2E-62 T 12-10-2018 Alide_0262 e7c536ed540d202a7695d0e798c91471 512 SUPERFAMILY SSF52540 3 244 2.13E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0262 e7c536ed540d202a7695d0e798c91471 512 SMART SM00382 300 510 1.2E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0262 e7c536ed540d202a7695d0e798c91471 512 SMART SM00382 28 230 4.2E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4341 fa2587d329c4ede92627109fefc4343a 323 Gene3D G3DSA:3.40.190.10 124 248 4.9E-106 T 12-10-2018 Alide_4341 fa2587d329c4ede92627109fefc4343a 323 SUPERFAMILY SSF53850 109 283 1.86E-11 T 12-10-2018 Alide_4341 fa2587d329c4ede92627109fefc4343a 323 Gene3D G3DSA:3.40.190.150 28 313 4.9E-106 T 12-10-2018 Alide_4341 fa2587d329c4ede92627109fefc4343a 323 PIRSF PIRSF017082 1 323 2.9E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4341 fa2587d329c4ede92627109fefc4343a 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 319 1.8E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2359 9022a77a3828a22525f1263197b54aa4 596 SUPERFAMILY SSF56645 35 293 2.62E-56 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2359 9022a77a3828a22525f1263197b54aa4 596 Gene3D G3DSA:1.20.140.10 289 453 1.4E-45 T 12-10-2018 Alide_2359 9022a77a3828a22525f1263197b54aa4 596 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 270 2.1E-15 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_2359 9022a77a3828a22525f1263197b54aa4 596 Gene3D G3DSA:2.40.110.10 159 288 2.3E-27 T 12-10-2018 Alide_2359 9022a77a3828a22525f1263197b54aa4 596 Gene3D G3DSA:1.10.540.10 30 157 3.7E-16 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_2359 9022a77a3828a22525f1263197b54aa4 596 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 38 155 2.9E-11 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_2359 9022a77a3828a22525f1263197b54aa4 596 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 467 592 4.3E-30 T 12-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain Alide_2359 9022a77a3828a22525f1263197b54aa4 596 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 2 32 1.1E-8 T 12-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria Alide_2359 9022a77a3828a22525f1263197b54aa4 596 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 449 5.0E-26 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_2359 9022a77a3828a22525f1263197b54aa4 596 SUPERFAMILY SSF47203 281 459 3.38E-43 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_1479 46b08ce2ed7282f1f338c92f1b058318 258 SUPERFAMILY SSF55315 8 97 1.74E-10 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like Alide_1479 46b08ce2ed7282f1f338c92f1b058318 258 SUPERFAMILY SSF75217 108 253 3.34E-31 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases Alide_1479 46b08ce2ed7282f1f338c92f1b058318 258 Pfam PF00588 SpoU rRNA Methylase family 116 251 5.5E-26 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Alide_1479 46b08ce2ed7282f1f338c92f1b058318 258 Gene3D G3DSA:3.40.1280.10 107 258 3.0E-37 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Alide_1479 46b08ce2ed7282f1f338c92f1b058318 258 Gene3D G3DSA:3.30.1330.30 7 106 2.0E-6 T 12-10-2018 IPR029064 50S ribosomal protein L30e-like Alide_1533 b31f148577183429a3a18c4823506b28 184 TIGRFAM TIGR01841 phasin: phasin family protein 26 111 1.6E-22 T 12-10-2018 IPR010127 Phasin, subfamily 1 Alide_1533 b31f148577183429a3a18c4823506b28 184 Pfam PF09361 Phasin protein 6 104 4.8E-30 T 12-10-2018 IPR018968 Phasin Alide_3956 a189a9a04854edfce833aa8fd5836498 250 SUPERFAMILY SSF52799 8 245 1.41E-53 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like Alide_3956 a189a9a04854edfce833aa8fd5836498 250 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 144 154 - T 12-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 Alide_3956 a189a9a04854edfce833aa8fd5836498 250 Gene3D G3DSA:3.90.190.10 9 245 2.4E-60 T 12-10-2018 IPR029021 Protein-tyrosine phosphatase-like Alide_3956 a189a9a04854edfce833aa8fd5836498 250 Pfam PF13350 Tyrosine phosphatase family 9 245 4.4E-68 T 12-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type Alide_1756 318fd0f84eb14e24aaa89f1986da601c 132 Pfam PF01219 Prokaryotic diacylglycerol kinase 26 123 3.5E-31 T 12-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Alide_1756 318fd0f84eb14e24aaa89f1986da601c 132 Gene3D G3DSA:1.10.3830.10 11 130 3.2E-35 T 12-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 Alide_3463 2460d72d9e2dd3461a30860c7d6c3040 360 Pfam PF10282 Lactonase, 7-bladed beta-propeller 7 356 5.7E-89 T 12-10-2018 IPR019405 Lactonase, 7-bladed beta propeller Alide_3463 2460d72d9e2dd3461a30860c7d6c3040 360 Gene3D G3DSA:2.130.10.10 2 360 5.5E-95 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Alide_3463 2460d72d9e2dd3461a30860c7d6c3040 360 SUPERFAMILY SSF51004 25 345 3.53E-38 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily Alide_1434 fb92a3177f052ebe4998358a8b7d88e2 397 Pfam PF04860 Phage portal protein 44 371 5.5E-92 T 12-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein Alide_1434 fb92a3177f052ebe4998358a8b7d88e2 397 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 34 377 1.4E-75 T 12-10-2018 IPR006427 Phage portal protein, HK97 Alide_1434 fb92a3177f052ebe4998358a8b7d88e2 397 Gene3D G3DSA:1.20.1270.210 36 311 8.5E-8 T 12-10-2018 Alide_1434 fb92a3177f052ebe4998358a8b7d88e2 397 Gene3D G3DSA:2.40.500.30 59 317 8.5E-8 T 12-10-2018 Alide_1434 fb92a3177f052ebe4998358a8b7d88e2 397 Gene3D G3DSA:3.30.1120.70 204 256 8.5E-8 T 12-10-2018 Alide_1805 a804bfb9d2e8d3cf69c5d05b60f0ad9d 395 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 78 96 - T 12-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 Alide_1805 a804bfb9d2e8d3cf69c5d05b60f0ad9d 395 Pfam PF00108 Thiolase, N-terminal domain 5 114 2.4E-17 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_1805 a804bfb9d2e8d3cf69c5d05b60f0ad9d 395 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 12-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Alide_1805 a804bfb9d2e8d3cf69c5d05b60f0ad9d 395 PIRSF PIRSF000429 1 391 2.4E-64 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_1805 a804bfb9d2e8d3cf69c5d05b60f0ad9d 395 SUPERFAMILY SSF53901 5 236 5.43E-48 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1805 a804bfb9d2e8d3cf69c5d05b60f0ad9d 395 SUPERFAMILY SSF53901 266 382 8.42E-30 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1805 a804bfb9d2e8d3cf69c5d05b60f0ad9d 395 Pfam PF02803 Thiolase, C-terminal domain 272 366 8.8E-11 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_1805 a804bfb9d2e8d3cf69c5d05b60f0ad9d 395 Gene3D G3DSA:3.40.47.10 4 394 2.8E-113 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_1298 925d307408db1f6fea7792d0897a15a5 174 Pfam PF02627 Carboxymuconolactone decarboxylase family 41 121 3.1E-13 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_1298 925d307408db1f6fea7792d0897a15a5 174 Gene3D G3DSA:1.20.1290.10 32 170 2.2E-48 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_1298 925d307408db1f6fea7792d0897a15a5 174 SUPERFAMILY SSF69118 4 170 1.25E-43 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_4249 9c95b6cbf9ada245f10613bca8d7f844 101 Pfam PF09413 Putative prokaryotic signal transducing protein 1 69 2.1E-8 T 12-10-2018 IPR018551 Domain of unknown function DUF2007 Alide_0607 ccbaedbe260812a4ebc3e3abec9a7b84 323 Gene3D G3DSA:3.40.190.150 32 313 8.5E-91 T 12-10-2018 Alide_0607 ccbaedbe260812a4ebc3e3abec9a7b84 323 PIRSF PIRSF017082 1 323 8.5E-64 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0607 ccbaedbe260812a4ebc3e3abec9a7b84 323 SUPERFAMILY SSF53850 115 286 1.21E-15 T 12-10-2018 Alide_0607 ccbaedbe260812a4ebc3e3abec9a7b84 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 319 2.4E-66 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0607 ccbaedbe260812a4ebc3e3abec9a7b84 323 Gene3D G3DSA:3.40.190.10 126 248 8.5E-91 T 12-10-2018 Alide_3436 c8dd1d1809294cc4b67acf3cba97dbbc 85 Pfam PF00462 Glutaredoxin 4 64 3.7E-21 T 12-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Alide_3436 c8dd1d1809294cc4b67acf3cba97dbbc 85 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 83 6.9E-34 T 12-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 Alide_3436 c8dd1d1809294cc4b67acf3cba97dbbc 85 PRINTS PR00160 Glutaredoxin signature 4 22 5.2E-17 T 12-10-2018 IPR014025 Glutaredoxin subgroup Alide_3436 c8dd1d1809294cc4b67acf3cba97dbbc 85 PRINTS PR00160 Glutaredoxin signature 61 74 5.2E-17 T 12-10-2018 IPR014025 Glutaredoxin subgroup Alide_3436 c8dd1d1809294cc4b67acf3cba97dbbc 85 PRINTS PR00160 Glutaredoxin signature 47 60 5.2E-17 T 12-10-2018 IPR014025 Glutaredoxin subgroup Alide_3436 c8dd1d1809294cc4b67acf3cba97dbbc 85 Gene3D G3DSA:3.40.30.10 1 85 3.5E-25 T 12-10-2018 Alide_3436 c8dd1d1809294cc4b67acf3cba97dbbc 85 SUPERFAMILY SSF52833 2 84 1.41E-26 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3436 c8dd1d1809294cc4b67acf3cba97dbbc 85 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 12-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 12 225 18.503 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 PIRSF PIRSF017184 10 508 1.0E-78 T 12-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 233 502 16.656 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 Pfam PF03853 YjeF-related protein N-terminus 32 204 4.8E-35 T 12-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 Gene3D G3DSA:3.40.1190.20 240 508 1.3E-58 T 12-10-2018 IPR029056 Ribokinase-like Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 Pfam PF01256 Carbohydrate kinase 270 499 3.7E-42 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 243 507 3.3E-47 T 12-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 SUPERFAMILY SSF64153 12 254 4.71E-44 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 Gene3D G3DSA:3.40.50.10260 12 229 8.7E-45 T 12-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 Alide_1461 70cda2f38427cd2b4c86a00a92269cb9 508 SUPERFAMILY SSF53613 242 506 9.99E-50 T 12-10-2018 IPR029056 Ribokinase-like Alide_2775 1fce434eee60c48ca477189594ed3261 259 Pfam PF01614 Bacterial transcriptional regulator 137 253 6.0E-15 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_2775 1fce434eee60c48ca477189594ed3261 259 SUPERFAMILY SSF46785 20 87 1.02E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2775 1fce434eee60c48ca477189594ed3261 259 Gene3D G3DSA:3.30.450.40 88 252 9.0E-42 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_2775 1fce434eee60c48ca477189594ed3261 259 Gene3D G3DSA:1.10.10.10 12 87 6.4E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2775 1fce434eee60c48ca477189594ed3261 259 Pfam PF09339 IclR helix-turn-helix domain 23 69 1.3E-11 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2775 1fce434eee60c48ca477189594ed3261 259 SUPERFAMILY SSF55781 76 256 1.11E-34 T 12-10-2018 Alide_2775 1fce434eee60c48ca477189594ed3261 259 SMART SM00346 20 108 6.0E-11 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2285 6729427facc1d840b83e430e94e2c88b 407 Gene3D G3DSA:3.40.50.10540 19 397 9.0E-101 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2285 6729427facc1d840b83e430e94e2c88b 407 Pfam PF02515 CoA-transferase family III 20 382 3.8E-96 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2285 6729427facc1d840b83e430e94e2c88b 407 SUPERFAMILY SSF89796 16 405 7.33E-108 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2285 6729427facc1d840b83e430e94e2c88b 407 Gene3D G3DSA:3.30.1540.10 236 334 9.0E-101 T 12-10-2018 Alide_2578 e70d15834e9d6660a619f07d402fb9ea 364 Gene3D G3DSA:3.90.660.10 62 326 9.3E-93 T 12-10-2018 Alide_2578 e70d15834e9d6660a619f07d402fb9ea 364 SUPERFAMILY SSF51905 23 361 2.81E-33 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2578 e70d15834e9d6660a619f07d402fb9ea 364 Gene3D G3DSA:3.50.50.60 25 360 9.3E-93 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2578 e70d15834e9d6660a619f07d402fb9ea 364 Pfam PF13450 NAD(P)-binding Rossmann-like domain 26 84 3.2E-14 T 12-10-2018 Alide_2578 e70d15834e9d6660a619f07d402fb9ea 364 PRINTS PR00419 Adrenodoxin reductase family signature 46 59 2.6E-7 T 12-10-2018 Alide_2578 e70d15834e9d6660a619f07d402fb9ea 364 PRINTS PR00419 Adrenodoxin reductase family signature 23 45 2.6E-7 T 12-10-2018 Alide_2578 e70d15834e9d6660a619f07d402fb9ea 364 Pfam PF01593 Flavin containing amine oxidoreductase 120 319 1.7E-5 T 12-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 Alide_3254 2bff1b079e779f64b4b44d1a2726bf0f 536 Gene3D G3DSA:3.30.870.10 310 496 1.5E-34 T 12-10-2018 Alide_3254 2bff1b079e779f64b4b44d1a2726bf0f 536 Gene3D G3DSA:3.30.870.10 70 268 5.0E-35 T 12-10-2018 Alide_3254 2bff1b079e779f64b4b44d1a2726bf0f 536 Pfam PF13091 PLD-like domain 333 477 1.3E-22 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_3254 2bff1b079e779f64b4b44d1a2726bf0f 536 Pfam PF13091 PLD-like domain 90 241 3.6E-14 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_3254 2bff1b079e779f64b4b44d1a2726bf0f 536 SUPERFAMILY SSF56024 296 491 4.04E-34 T 12-10-2018 Alide_3254 2bff1b079e779f64b4b44d1a2726bf0f 536 SUPERFAMILY SSF56024 30 260 9.42E-39 T 12-10-2018 Alide_3254 2bff1b079e779f64b4b44d1a2726bf0f 536 SMART SM00155 182 209 0.23 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Alide_3254 2bff1b079e779f64b4b44d1a2726bf0f 536 SMART SM00155 427 454 3.3E-4 T 12-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Alide_1616 813aee2aa9783600262827a40b92c106 214 Gene3D G3DSA:1.10.10.10 138 204 3.9E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1616 813aee2aa9783600262827a40b92c106 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 1.1E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_1616 813aee2aa9783600262827a40b92c106 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 1.1E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_1616 813aee2aa9783600262827a40b92c106 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 1.1E-13 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_1616 813aee2aa9783600262827a40b92c106 214 SMART SM00448 10 121 6.2E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1616 813aee2aa9783600262827a40b92c106 214 SUPERFAMILY SSF52172 12 168 3.42E-29 T 12-10-2018 IPR011006 CheY-like superfamily Alide_1616 813aee2aa9783600262827a40b92c106 214 Pfam PF00072 Response regulator receiver domain 12 121 4.8E-22 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_1616 813aee2aa9783600262827a40b92c106 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 200 1.0E-20 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_1616 813aee2aa9783600262827a40b92c106 214 Gene3D G3DSA:3.40.50.2300 5 137 2.1E-35 T 12-10-2018 Alide_1616 813aee2aa9783600262827a40b92c106 214 SMART SM00421 145 202 4.7E-22 T 12-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Alide_2130 f8fba05e3116fc088bab8ab5ee777050 236 Pfam PF00005 ABC transporter 25 176 6.0E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2130 f8fba05e3116fc088bab8ab5ee777050 236 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2130 f8fba05e3116fc088bab8ab5ee777050 236 SUPERFAMILY SSF52540 6 229 8.68E-63 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2130 f8fba05e3116fc088bab8ab5ee777050 236 SMART SM00382 34 231 1.5E-14 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2130 f8fba05e3116fc088bab8ab5ee777050 236 Gene3D G3DSA:3.40.50.300 4 233 2.5E-61 T 12-10-2018 Alide_0163 4c548e4b64c022736d3254c5c75bdcc2 297 Pfam PF13452 N-terminal half of MaoC dehydratase 85 150 2.8E-8 T 12-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Alide_0163 4c548e4b64c022736d3254c5c75bdcc2 297 SUPERFAMILY SSF54637 179 296 1.49E-16 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0163 4c548e4b64c022736d3254c5c75bdcc2 297 Gene3D G3DSA:3.10.129.10 46 168 1.1E-8 T 12-10-2018 Alide_0163 4c548e4b64c022736d3254c5c75bdcc2 297 Gene3D G3DSA:3.10.129.10 178 297 4.8E-15 T 12-10-2018 Alide_3417 8ac02f29c1322a1fcfb2169615a8719f 278 Pfam PF02616 Segregation and condensation protein ScpA 62 273 2.9E-30 T 12-10-2018 IPR003768 Segregation and condensation protein A Alide_3417 8ac02f29c1322a1fcfb2169615a8719f 278 Hamap MF_01805 Segregation and condensation protein A [scpA]. 45 275 21.025 T 12-10-2018 IPR003768 Segregation and condensation protein A Alide_0704 00e3792136811d868df7fd97927f1fbb 275 SUPERFAMILY SSF51730 4 274 1.1E-92 T 12-10-2018 IPR029041 FAD-linked oxidoreductase-like Alide_0704 00e3792136811d868df7fd97927f1fbb 275 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 5 273 4.7E-94 T 12-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 Alide_0704 00e3792136811d868df7fd97927f1fbb 275 Gene3D G3DSA:3.20.20.220 1 275 7.7E-93 T 12-10-2018 Alide_0704 00e3792136811d868df7fd97927f1fbb 275 Pfam PF02219 Methylenetetrahydrofolate reductase 5 274 6.5E-83 T 12-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Alide_4093 4f91a374e611455a808eac4b69311f56 732 Gene3D G3DSA:3.20.20.360 10 589 7.3E-275 T 12-10-2018 Alide_4093 4f91a374e611455a808eac4b69311f56 732 Pfam PF01274 Malate synthase 18 704 4.2E-165 T 12-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Alide_4093 4f91a374e611455a808eac4b69311f56 732 Gene3D G3DSA:2.170.170.11 135 264 7.3E-275 T 12-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Alide_4093 4f91a374e611455a808eac4b69311f56 732 SUPERFAMILY SSF51645 3 729 3.92E-296 T 12-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Alide_4093 4f91a374e611455a808eac4b69311f56 732 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 5 729 0.0 T 12-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Alide_4093 4f91a374e611455a808eac4b69311f56 732 Hamap MF_00641 Malate synthase G [glcB]. 1 732 401.828 T 12-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 Alide_4093 4f91a374e611455a808eac4b69311f56 732 Gene3D G3DSA:1.20.1220.12 592 732 2.0E-69 T 12-10-2018 Alide_2865 eb03f80fd31b75507cb6d851e4003b16 184 SUPERFAMILY SSF88946 1 111 3.77E-32 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_2865 eb03f80fd31b75507cb6d851e4003b16 184 Gene3D G3DSA:1.10.10.10 121 182 2.0E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2865 eb03f80fd31b75507cb6d851e4003b16 184 Pfam PF08281 Sigma-70, region 4 127 176 3.1E-17 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_2865 eb03f80fd31b75507cb6d851e4003b16 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 23 181 4.0E-35 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_2865 eb03f80fd31b75507cb6d851e4003b16 184 Pfam PF04542 Sigma-70 region 2 27 93 6.3E-19 T 12-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Alide_2865 eb03f80fd31b75507cb6d851e4003b16 184 Gene3D G3DSA:1.10.1740.10 3 117 1.3E-30 T 12-10-2018 Alide_2865 eb03f80fd31b75507cb6d851e4003b16 184 SUPERFAMILY SSF88659 120 182 1.68E-16 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_2751 81ea9f42bfafc829f87aa463da1265a8 92 Gene3D G3DSA:1.20.58.1000 1 92 1.5E-30 T 12-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily Alide_2751 81ea9f42bfafc829f87aa463da1265a8 92 Pfam PF02583 Metal-sensitive transcriptional repressor 7 88 4.8E-24 T 12-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 Alide_4095 8e00ad10ef78356424e6ddc4c5494db3 62 SUPERFAMILY SSF55331 2 61 9.29E-19 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily Alide_4095 8e00ad10ef78356424e6ddc4c5494db3 62 Pfam PF01361 Tautomerase enzyme 5 56 1.7E-14 T 12-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 Alide_4095 8e00ad10ef78356424e6ddc4c5494db3 62 Gene3D G3DSA:3.30.429.10 1 60 7.1E-24 T 12-10-2018 IPR014347 Tautomerase/MIF superfamily Alide_4095 8e00ad10ef78356424e6ddc4c5494db3 62 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 61 1.5E-17 T 12-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 Alide_2902 77b893493ebd92e0765d305abcde0a98 566 SUPERFAMILY SSF56801 15 560 1.44E-148 T 12-10-2018 Alide_2902 77b893493ebd92e0765d305abcde0a98 566 ProSitePatterns PS00455 Putative AMP-binding domain signature. 216 227 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_2902 77b893493ebd92e0765d305abcde0a98 566 Gene3D G3DSA:3.30.300.310 461 565 6.2E-27 T 12-10-2018 Alide_2902 77b893493ebd92e0765d305abcde0a98 566 Pfam PF00501 AMP-binding enzyme 30 464 1.1E-105 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_2902 77b893493ebd92e0765d305abcde0a98 566 Pfam PF13193 AMP-binding enzyme C-terminal domain 474 551 3.3E-18 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_2902 77b893493ebd92e0765d305abcde0a98 566 Gene3D G3DSA:3.40.50.12780 13 460 2.0E-116 T 12-10-2018 Alide_4282 27e87addffa9cf9db335017982266a48 324 Gene3D G3DSA:3.40.630.10 20 323 2.9E-48 T 12-10-2018 Alide_4282 27e87addffa9cf9db335017982266a48 324 SUPERFAMILY SSF53187 6 319 3.97E-53 T 12-10-2018 Alide_4282 27e87addffa9cf9db335017982266a48 324 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 36 186 2.1E-12 T 12-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 Alide_1089 8a02505b7d176d2e68b1b44da4d75a2f 259 SMART SM00382 33 231 3.6E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1089 8a02505b7d176d2e68b1b44da4d75a2f 259 Pfam PF00005 ABC transporter 24 183 3.7E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1089 8a02505b7d176d2e68b1b44da4d75a2f 259 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1089 8a02505b7d176d2e68b1b44da4d75a2f 259 Gene3D G3DSA:3.40.50.300 6 258 9.5E-76 T 12-10-2018 Alide_1089 8a02505b7d176d2e68b1b44da4d75a2f 259 SUPERFAMILY SSF52540 10 252 1.42E-73 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1089 8a02505b7d176d2e68b1b44da4d75a2f 259 PIRSF PIRSF039085 5 259 2.6E-114 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Alide_4080 ed8b6a098676683dae8049b93973d706 147 Gene3D G3DSA:3.10.129.10 12 141 1.5E-27 T 12-10-2018 Alide_4080 ed8b6a098676683dae8049b93973d706 147 SUPERFAMILY SSF54637 2 139 8.53E-29 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_4080 ed8b6a098676683dae8049b93973d706 147 Pfam PF13279 Thioesterase-like superfamily 25 136 1.0E-14 T 12-10-2018 Alide_0902 d6b89a3792047cbc4d5029d629ec321f 142 SUPERFAMILY SSF81330 12 137 7.19E-35 T 12-10-2018 IPR036019 Gated mechanosensitive channel Alide_0902 d6b89a3792047cbc4d5029d629ec321f 142 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 4 141 5.4E-39 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Alide_0902 d6b89a3792047cbc4d5029d629ec321f 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 103 112 3.7E-12 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Alide_0902 d6b89a3792047cbc4d5029d629ec321f 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 3.7E-12 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Alide_0902 d6b89a3792047cbc4d5029d629ec321f 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 94 102 3.7E-12 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Alide_0902 d6b89a3792047cbc4d5029d629ec321f 142 Gene3D G3DSA:1.10.1200.120 3 142 1.1E-38 T 12-10-2018 IPR036019 Gated mechanosensitive channel Alide_0902 d6b89a3792047cbc4d5029d629ec321f 142 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 142 23.567 T 12-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Alide_0902 d6b89a3792047cbc4d5029d629ec321f 142 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 4 141 5.8E-42 T 12-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L Alide_0902 d6b89a3792047cbc4d5029d629ec321f 142 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 12-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site Alide_1937 35ea5926f2ad70b799683cb2328d6c3d 127 Gene3D G3DSA:3.40.30.10 9 95 4.5E-13 T 12-10-2018 Alide_1937 35ea5926f2ad70b799683cb2328d6c3d 127 Pfam PF00085 Thioredoxin 21 80 1.7E-11 T 12-10-2018 IPR013766 Thioredoxin domain GO:0045454 Alide_1937 35ea5926f2ad70b799683cb2328d6c3d 127 SUPERFAMILY SSF52833 13 101 1.19E-15 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2915 6196b97d1ca565f0c53cd561e98c8874 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 316 9.3E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2915 6196b97d1ca565f0c53cd561e98c8874 323 Gene3D G3DSA:3.40.190.10 127 250 1.1E-91 T 12-10-2018 Alide_2915 6196b97d1ca565f0c53cd561e98c8874 323 Gene3D G3DSA:3.40.190.150 31 315 1.1E-91 T 12-10-2018 Alide_2915 6196b97d1ca565f0c53cd561e98c8874 323 PIRSF PIRSF017082 1 322 1.5E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2915 6196b97d1ca565f0c53cd561e98c8874 323 SUPERFAMILY SSF53850 108 288 2.61E-8 T 12-10-2018 Alide_0483 e3e9027aa58fb87b54f63eaf195d83fd 505 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 62 222 4.3E-24 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like Alide_2331 afc485857f6095bca31aff46f2af5664 295 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 252 3.4E-33 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_1885 7d25a178ec077d465dc0a2e7b8fc66d4 164 Gene3D G3DSA:3.40.630.30 2 161 2.4E-44 T 12-10-2018 Alide_1885 7d25a178ec077d465dc0a2e7b8fc66d4 164 SUPERFAMILY SSF55729 19 147 5.32E-11 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_1885 7d25a178ec077d465dc0a2e7b8fc66d4 164 Pfam PF13673 Acetyltransferase (GNAT) domain 30 148 2.2E-7 T 12-10-2018 IPR000182 GNAT domain Alide_3075 b1acf24c534c04fb4eff398e73dbb4a8 137 Gene3D G3DSA:1.10.760.10 51 137 9.8E-35 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3075 b1acf24c534c04fb4eff398e73dbb4a8 137 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 53 132 1.5E-15 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3075 b1acf24c534c04fb4eff398e73dbb4a8 137 PRINTS PR00607 Class IE cytochrome C signature 75 85 1.3E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Alide_3075 b1acf24c534c04fb4eff398e73dbb4a8 137 PRINTS PR00607 Class IE cytochrome C signature 107 119 1.3E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Alide_3075 b1acf24c534c04fb4eff398e73dbb4a8 137 PRINTS PR00607 Class IE cytochrome C signature 64 75 1.3E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Alide_3075 b1acf24c534c04fb4eff398e73dbb4a8 137 PRINTS PR00607 Class IE cytochrome C signature 122 133 1.3E-13 T 12-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 Alide_3075 b1acf24c534c04fb4eff398e73dbb4a8 137 SUPERFAMILY SSF46626 55 135 8.55E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2254 edb04984d104f390312f97d6117b6af4 827 SUPERFAMILY SSF53955 68 282 2.11E-68 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_2254 edb04984d104f390312f97d6117b6af4 827 SUPERFAMILY SSF56601 235 692 2.39E-106 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Alide_2254 edb04984d104f390312f97d6117b6af4 827 Gene3D G3DSA:3.90.1310.20 75 319 3.6E-78 T 12-10-2018 Alide_2254 edb04984d104f390312f97d6117b6af4 827 Gene3D G3DSA:1.10.3810.10 88 280 3.6E-78 T 12-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_2254 edb04984d104f390312f97d6117b6af4 827 Pfam PF00912 Transglycosylase 78 254 1.7E-59 T 12-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_2254 edb04984d104f390312f97d6117b6af4 827 Pfam PF00905 Penicillin binding protein transpeptidase domain 407 639 1.8E-34 T 12-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Alide_2254 edb04984d104f390312f97d6117b6af4 827 Gene3D G3DSA:3.40.710.10 372 716 3.2E-91 T 12-10-2018 Alide_2254 edb04984d104f390312f97d6117b6af4 827 Gene3D G3DSA:3.40.710.10 320 334 3.6E-78 T 12-10-2018 Alide_2733 26617ea5875fd370b8d64f68fde4d527 167 Gene3D G3DSA:1.10.760.10 26 147 8.8E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2733 26617ea5875fd370b8d64f68fde4d527 167 SUPERFAMILY SSF46626 33 149 1.58E-21 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2733 26617ea5875fd370b8d64f68fde4d527 167 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 49 142 4.9E-12 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2733 26617ea5875fd370b8d64f68fde4d527 167 PRINTS PR00605 Class IC cytochrome C signature 58 69 5.2E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Alide_2733 26617ea5875fd370b8d64f68fde4d527 167 PRINTS PR00605 Class IC cytochrome C signature 120 142 5.2E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Alide_0743 f388e1c03c3379dce1945eab873067d1 412 Gene3D G3DSA:3.40.50.2000 207 385 1.4E-21 T 12-10-2018 Alide_0743 f388e1c03c3379dce1945eab873067d1 412 TIGRFAM TIGR03087 stp1: sugar transferase, PEP-CTERM/EpsH1 system associated 7 400 1.8E-163 T 12-10-2018 IPR017521 Sugar transferase, PEP-CTERM, Stp1 Alide_0743 f388e1c03c3379dce1945eab873067d1 412 Pfam PF13692 Glycosyl transferases group 1 231 366 7.0E-29 T 12-10-2018 Alide_0743 f388e1c03c3379dce1945eab873067d1 412 SUPERFAMILY SSF53756 6 394 3.14E-31 T 12-10-2018 Alide_2438 fb009a66c0946f8941229b9d402f23e3 260 SMART SM00382 29 227 3.7E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2438 fb009a66c0946f8941229b9d402f23e3 260 Gene3D G3DSA:3.40.50.300 1 258 1.7E-66 T 12-10-2018 Alide_2438 fb009a66c0946f8941229b9d402f23e3 260 Pfam PF00005 ABC transporter 20 179 4.8E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2438 fb009a66c0946f8941229b9d402f23e3 260 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2438 fb009a66c0946f8941229b9d402f23e3 260 SUPERFAMILY SSF52540 3 249 2.51E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 Gene3D G3DSA:3.40.50.150 238 454 5.6E-55 T 12-10-2018 Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 SUPERFAMILY SSF48013 42 158 7.19E-15 T 12-10-2018 IPR035926 NusB-like superfamily Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 SUPERFAMILY SSF53335 150 453 2.34E-57 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 Gene3D G3DSA:1.10.940.10 10 153 8.0E-10 T 12-10-2018 IPR035926 NusB-like superfamily Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 335 346 - T 12-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 Pfam PF01029 NusB family 39 135 7.1E-6 T 12-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 436 453 1.6E-23 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 262 272 1.6E-23 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 229 243 1.6E-23 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 386 402 1.6E-23 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 336 348 1.6E-23 T 12-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 Gene3D G3DSA:3.30.70.1170 182 237 2.0E-12 T 12-10-2018 Alide_0465 ed480b1f73e9d39995d73c03c960e3dc 455 Pfam PF01189 16S rRNA methyltransferase RsmB/F 260 452 4.7E-52 T 12-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 Alide_2573 a4a499e96ffe88c34fd5830da9f642ec 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 12-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 Alide_2573 a4a499e96ffe88c34fd5830da9f642ec 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_2573 a4a499e96ffe88c34fd5830da9f642ec 482 Gene3D G3DSA:3.40.605.10 17 473 9.2E-162 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_2573 a4a499e96ffe88c34fd5830da9f642ec 482 Gene3D G3DSA:3.40.309.10 253 449 9.2E-162 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_2573 a4a499e96ffe88c34fd5830da9f642ec 482 SUPERFAMILY SSF53720 2 478 2.75E-161 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_2573 a4a499e96ffe88c34fd5830da9f642ec 482 Pfam PF00171 Aldehyde dehydrogenase family 18 477 1.6E-163 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_1344 03f3d4d99daea09d8c4efc760bf7d1b4 256 SUPERFAMILY SSF52540 4 247 1.04E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1344 03f3d4d99daea09d8c4efc760bf7d1b4 256 Pfam PF00005 ABC transporter 22 177 2.2E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1344 03f3d4d99daea09d8c4efc760bf7d1b4 256 Gene3D G3DSA:3.40.50.300 2 247 5.2E-60 T 12-10-2018 Alide_1344 03f3d4d99daea09d8c4efc760bf7d1b4 256 SMART SM00382 30 224 2.6E-5 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1344 03f3d4d99daea09d8c4efc760bf7d1b4 256 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 225 246 3.0E-8 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_0538 ba208cee0ff8c45dede9f3d0db9c88b4 338 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 333 4.3E-91 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0538 ba208cee0ff8c45dede9f3d0db9c88b4 338 Gene3D G3DSA:3.40.190.10 133 263 1.5E-114 T 12-10-2018 Alide_0538 ba208cee0ff8c45dede9f3d0db9c88b4 338 PIRSF PIRSF017082 1 337 1.6E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0538 ba208cee0ff8c45dede9f3d0db9c88b4 338 SUPERFAMILY SSF53850 121 298 4.78E-9 T 12-10-2018 Alide_0538 ba208cee0ff8c45dede9f3d0db9c88b4 338 Gene3D G3DSA:3.40.190.150 35 328 1.5E-114 T 12-10-2018 Alide_4407 a30b044f2f183cc99dd819c78a584145 246 SUPERFAMILY SSF53681 9 130 6.1E-22 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_4407 a30b044f2f183cc99dd819c78a584145 246 Gene3D G3DSA:3.40.50.1860 120 231 1.8E-59 T 12-10-2018 Alide_4407 a30b044f2f183cc99dd819c78a584145 246 Gene3D G3DSA:3.40.50.1860 9 237 1.8E-59 T 12-10-2018 Alide_4407 a30b044f2f183cc99dd819c78a584145 246 TIGRFAM TIGR00035 asp_race: aspartate racemase 8 242 1.4E-41 T 12-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 Alide_4407 a30b044f2f183cc99dd819c78a584145 246 Pfam PF01177 Asp/Glu/Hydantoin racemase 13 239 2.9E-50 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_4407 a30b044f2f183cc99dd819c78a584145 246 SUPERFAMILY SSF53681 132 243 8.72E-19 T 12-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_4407 a30b044f2f183cc99dd819c78a584145 246 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 93 101 - T 12-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_1766 26857594db8e0a8c593941ce35eade78 337 Gene3D G3DSA:3.90.850.10 1 335 2.7E-139 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_1766 26857594db8e0a8c593941ce35eade78 337 SUPERFAMILY SSF56529 76 331 9.81E-58 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_1766 26857594db8e0a8c593941ce35eade78 337 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 81 331 4.2E-42 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Alide_2209 ab8f52ef96db479a9328f9168717f8a8 133 Gene3D G3DSA:3.90.1010.10 1 132 6.8E-58 T 12-10-2018 Alide_2209 ab8f52ef96db479a9328f9168717f8a8 133 Pfam PF01592 NifU-like N terminal domain 2 127 1.9E-57 T 12-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Alide_2209 ab8f52ef96db479a9328f9168717f8a8 133 SUPERFAMILY SSF82649 1 126 2.15E-47 T 12-10-2018 Alide_2209 ab8f52ef96db479a9328f9168717f8a8 133 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 126 1.3E-67 T 12-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Alide_3569 88a45a6b74baad743790ec928f805f2f 170 Pfam PF10709 Protein of unknown function (DUF2511) 82 170 3.3E-13 T 12-10-2018 IPR019648 Protein of unknown function DUF2511 Alide_1495 7b082f4b242ead8c9a805d09bcacf447 332 Gene3D G3DSA:1.10.3210.10 24 231 5.0E-20 T 12-10-2018 Alide_1495 7b082f4b242ead8c9a805d09bcacf447 332 SUPERFAMILY SSF109604 75 212 3.56E-11 T 12-10-2018 Alide_3743 af2cd18644f1cc14f13af03841b5ed9e 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 322 4.0E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3743 af2cd18644f1cc14f13af03841b5ed9e 325 Gene3D G3DSA:3.40.190.150 30 315 2.1E-106 T 12-10-2018 Alide_3743 af2cd18644f1cc14f13af03841b5ed9e 325 SUPERFAMILY SSF53850 114 285 5.29E-12 T 12-10-2018 Alide_3743 af2cd18644f1cc14f13af03841b5ed9e 325 PIRSF PIRSF017082 1 325 3.3E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3743 af2cd18644f1cc14f13af03841b5ed9e 325 Gene3D G3DSA:3.40.190.10 127 250 2.1E-106 T 12-10-2018 Alide_0805 e3be286538a01a14e2f6d68656802f89 149 Pfam PF02566 OsmC-like protein 44 142 1.5E-14 T 12-10-2018 IPR003718 OsmC/Ohr family Alide_0805 e3be286538a01a14e2f6d68656802f89 149 SUPERFAMILY SSF82784 1 148 1.96E-35 T 12-10-2018 IPR036102 OsmC/Ohr superfamily Alide_0805 e3be286538a01a14e2f6d68656802f89 149 Gene3D G3DSA:3.30.300.20 13 148 7.3E-31 T 12-10-2018 IPR015946 K homology domain-like, alpha/beta Alide_0528 bfdc525cb50664580ebe5c7c6d119a85 459 Pfam PF03972 MmgE/PrpD family 24 442 6.3E-88 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_0528 bfdc525cb50664580ebe5c7c6d119a85 459 SUPERFAMILY SSF103378 21 450 2.09E-91 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_0528 bfdc525cb50664580ebe5c7c6d119a85 459 Gene3D G3DSA:1.10.4100.10 43 278 1.5E-93 T 12-10-2018 Alide_0528 bfdc525cb50664580ebe5c7c6d119a85 459 Gene3D G3DSA:3.30.1330.120 279 402 1.5E-93 T 12-10-2018 Alide_4288 37dcc16cfd2d27dad16b2e0fb4fcffe6 393 SUPERFAMILY SSF89796 14 361 6.02E-106 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4288 37dcc16cfd2d27dad16b2e0fb4fcffe6 393 Gene3D G3DSA:3.40.50.10540 11 231 3.7E-68 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4288 37dcc16cfd2d27dad16b2e0fb4fcffe6 393 Gene3D G3DSA:3.30.1540.10 232 317 1.7E-30 T 12-10-2018 Alide_4288 37dcc16cfd2d27dad16b2e0fb4fcffe6 393 Gene3D G3DSA:3.30.60.110 319 350 4.7E-10 T 12-10-2018 Alide_4288 37dcc16cfd2d27dad16b2e0fb4fcffe6 393 Pfam PF02515 CoA-transferase family III 16 353 4.8E-81 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 SUPERFAMILY SSF47729 22 112 9.13E-31 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 67 86 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 PRINTS PR01727 Prokaryotic integration host factor signature 61 76 2.6E-13 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 PRINTS PR01727 Prokaryotic integration host factor signature 95 109 2.6E-13 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 PRINTS PR01727 Prokaryotic integration host factor signature 79 92 2.6E-13 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 Pfam PF00216 Bacterial DNA-binding protein 22 110 2.2E-29 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 SMART SM00411 22 111 1.1E-37 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 20 116 27.832 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 Gene3D G3DSA:4.10.520.10 21 116 3.3E-33 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_2507 08f106684de10a692fa560ef9fb4bde5 117 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 21 114 7.8E-36 T 12-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 Alide_0146 e5580ed89b90e47bbb08a653a8a13998 369 Pfam PF02515 CoA-transferase family III 4 324 2.4E-77 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0146 e5580ed89b90e47bbb08a653a8a13998 369 Gene3D G3DSA:3.40.50.10540 4 320 2.0E-104 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0146 e5580ed89b90e47bbb08a653a8a13998 369 Gene3D G3DSA:3.30.1540.10 213 302 2.0E-104 T 12-10-2018 Alide_0146 e5580ed89b90e47bbb08a653a8a13998 369 SUPERFAMILY SSF89796 1 360 1.03E-100 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_4161 fe5a8a339f4ca3d034aadbb38e47dafb 259 SUPERFAMILY SSF52096 12 257 1.27E-67 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_4161 fe5a8a339f4ca3d034aadbb38e47dafb 259 Gene3D G3DSA:3.90.226.10 13 258 7.2E-67 T 12-10-2018 Alide_4161 fe5a8a339f4ca3d034aadbb38e47dafb 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 256 7.7E-42 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3825 f0d849a448cb56ff3e04adb9641c85da 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 322 7.1E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3825 f0d849a448cb56ff3e04adb9641c85da 326 Gene3D G3DSA:3.40.190.150 30 316 6.3E-97 T 12-10-2018 Alide_3825 f0d849a448cb56ff3e04adb9641c85da 326 PIRSF PIRSF017082 1 325 5.5E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3825 f0d849a448cb56ff3e04adb9641c85da 326 Gene3D G3DSA:3.40.190.10 128 250 6.3E-97 T 12-10-2018 Alide_3825 f0d849a448cb56ff3e04adb9641c85da 326 SUPERFAMILY SSF53850 97 281 3.98E-11 T 12-10-2018 Alide_2248 336fe544c89e998e160ed5465515fd73 109 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 5 109 6.4E-41 T 12-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 Alide_2248 336fe544c89e998e160ed5465515fd73 109 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 4 108 25.853 T 12-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 Alide_2248 336fe544c89e998e160ed5465515fd73 109 SUPERFAMILY SSF103481 10 107 1.1E-7 T 12-10-2018 Alide_3124 eb21d8d053bce4b5e5685122b0d7b24c 124 Pfam PF01250 Ribosomal protein S6 3 90 4.0E-26 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3124 eb21d8d053bce4b5e5685122b0d7b24c 124 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.427 T 12-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 Alide_3124 eb21d8d053bce4b5e5685122b0d7b24c 124 Gene3D G3DSA:3.30.70.60 1 92 1.8E-30 T 12-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Alide_3124 eb21d8d053bce4b5e5685122b0d7b24c 124 SUPERFAMILY SSF54995 1 103 1.83E-35 T 12-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3124 eb21d8d053bce4b5e5685122b0d7b24c 124 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 12-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 Alide_3124 eb21d8d053bce4b5e5685122b0d7b24c 124 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 2.0E-32 T 12-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0866 959225e19f18093e0eed7e13fd874ca5 220 Pfam PF05494 MlaC protein 39 203 8.7E-55 T 12-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Alide_0866 959225e19f18093e0eed7e13fd874ca5 220 Gene3D G3DSA:1.10.10.640 76 202 2.0E-58 T 12-10-2018 Alide_0866 959225e19f18093e0eed7e13fd874ca5 220 Gene3D G3DSA:3.10.450.50 40 177 2.0E-58 T 12-10-2018 Alide_0866 959225e19f18093e0eed7e13fd874ca5 220 PIRSF PIRSF004649 3 215 3.3E-48 T 12-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Alide_2408 7335d3dae410627cfd679a89878baf63 263 SUPERFAMILY SSF52096 4 262 3.06E-85 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2408 7335d3dae410627cfd679a89878baf63 263 Gene3D G3DSA:3.90.226.10 1 205 7.3E-67 T 12-10-2018 Alide_2408 7335d3dae410627cfd679a89878baf63 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 262 3.0E-62 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_2408 7335d3dae410627cfd679a89878baf63 263 Gene3D G3DSA:1.10.12.10 206 263 1.1E-17 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3305 e55cc9946d839e8c57501861d20e1450 356 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 337 3.4E-67 T 12-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Alide_3305 e55cc9946d839e8c57501861d20e1450 356 SUPERFAMILY SSF51395 1 349 5.64E-111 T 12-10-2018 Alide_3305 e55cc9946d839e8c57501861d20e1450 356 Gene3D G3DSA:3.20.20.70 1 351 3.0E-119 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0944 4aee5e07d6068de1aa55ac2e319be58d 249 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 17 244 8.2E-35 T 12-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Alide_0944 4aee5e07d6068de1aa55ac2e319be58d 249 SUPERFAMILY SSF51695 10 246 2.62E-63 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Alide_0944 4aee5e07d6068de1aa55ac2e319be58d 249 Gene3D G3DSA:3.20.20.190 13 241 1.8E-73 T 12-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 Alide_3909 d4cca620a5cc01aec6cb296c59ca3bab 248 Pfam PF01925 Sulfite exporter TauE/SafE 11 240 5.9E-31 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 Gene3D G3DSA:4.10.640.10 6 92 5.3E-25 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 Pfam PF01084 Ribosomal protein S18 36 84 1.9E-22 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 PRINTS PR00974 Ribosomal protein S18 family signature 55 62 7.4E-15 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 PRINTS PR00974 Ribosomal protein S18 family signature 63 77 7.4E-15 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 PRINTS PR00974 Ribosomal protein S18 family signature 77 87 7.4E-15 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 PRINTS PR00974 Ribosomal protein S18 family signature 45 55 7.4E-15 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 38 90 4.0E-23 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 TIGRFAM TIGR00165 S18: ribosomal protein bS18 22 89 2.9E-32 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 SUPERFAMILY SSF46911 18 91 7.72E-26 T 12-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3122 3f777a37b929d24309f20fafb249f0bd 93 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 10 90 19.843 T 12-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1007 cecd0f56538e91def9beb70ee3116c6c 157 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 84 97 3.4E-8 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Alide_1007 cecd0f56538e91def9beb70ee3116c6c 157 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 101 115 3.4E-8 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Alide_1007 cecd0f56538e91def9beb70ee3116c6c 157 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 116 129 3.4E-8 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Alide_1007 cecd0f56538e91def9beb70ee3116c6c 157 SUPERFAMILY SSF51230 72 154 5.5E-17 T 12-10-2018 IPR011053 Single hybrid motif Alide_1007 cecd0f56538e91def9beb70ee3116c6c 157 Gene3D G3DSA:2.40.50.100 79 154 1.2E-21 T 12-10-2018 Alide_1007 cecd0f56538e91def9beb70ee3116c6c 157 Pfam PF00364 Biotin-requiring enzyme 82 154 5.9E-15 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_0418 35f37bc9bc9e85009336eda756747cda 138 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 12-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0418 35f37bc9bc9e85009336eda756747cda 138 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.7E-47 T 12-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Alide_0418 35f37bc9bc9e85009336eda756747cda 138 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.2E-38 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0418 35f37bc9bc9e85009336eda756747cda 138 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.2E-38 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0418 35f37bc9bc9e85009336eda756747cda 138 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.2E-38 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0418 35f37bc9bc9e85009336eda756747cda 138 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.2E-38 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0418 35f37bc9bc9e85009336eda756747cda 138 Gene3D G3DSA:3.90.1170.10 1 138 4.2E-54 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Alide_0418 35f37bc9bc9e85009336eda756747cda 138 SUPERFAMILY SSF54686 1 134 1.83E-52 T 12-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Alide_0418 35f37bc9bc9e85009336eda756747cda 138 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.887 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0418 35f37bc9bc9e85009336eda756747cda 138 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 6.3E-58 T 12-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0759 889ec0d31de09a2a2e892a3c1cb37e27 358 PRINTS PR01713 Nucleotide sugar epimerase signature 250 265 6.2E-5 T 12-10-2018 Alide_0759 889ec0d31de09a2a2e892a3c1cb37e27 358 PRINTS PR01713 Nucleotide sugar epimerase signature 45 61 6.2E-5 T 12-10-2018 Alide_0759 889ec0d31de09a2a2e892a3c1cb37e27 358 PRINTS PR01713 Nucleotide sugar epimerase signature 319 336 6.2E-5 T 12-10-2018 Alide_0759 889ec0d31de09a2a2e892a3c1cb37e27 358 SUPERFAMILY SSF51735 14 355 2.6E-79 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0759 889ec0d31de09a2a2e892a3c1cb37e27 358 Pfam PF16363 GDP-mannose 4,6 dehydratase 20 347 1.6E-47 T 12-10-2018 IPR016040 NAD(P)-binding domain Alide_0759 889ec0d31de09a2a2e892a3c1cb37e27 358 Gene3D G3DSA:3.90.25.10 210 352 1.5E-108 T 12-10-2018 Alide_0759 889ec0d31de09a2a2e892a3c1cb37e27 358 Gene3D G3DSA:3.40.50.720 20 340 1.5E-108 T 12-10-2018 Alide_0178 9e27843d3e77a810eeae59ac98504ff0 327 PIRSF PIRSF017082 1 326 8.0E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0178 9e27843d3e77a810eeae59ac98504ff0 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 323 4.2E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0178 9e27843d3e77a810eeae59ac98504ff0 327 Gene3D G3DSA:3.40.190.10 129 252 2.5E-114 T 12-10-2018 Alide_0178 9e27843d3e77a810eeae59ac98504ff0 327 SUPERFAMILY SSF53850 116 287 9.78E-13 T 12-10-2018 Alide_0178 9e27843d3e77a810eeae59ac98504ff0 327 Gene3D G3DSA:3.40.190.150 32 317 2.5E-114 T 12-10-2018 Alide_3097 647a0fef4bb21459eec928db4b1625e5 309 Gene3D G3DSA:1.10.10.10 3 89 7.3E-27 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3097 647a0fef4bb21459eec928db4b1625e5 309 Gene3D G3DSA:3.40.190.10 163 265 1.7E-66 T 12-10-2018 Alide_3097 647a0fef4bb21459eec928db4b1625e5 309 SUPERFAMILY SSF53850 89 298 1.76E-46 T 12-10-2018 Alide_3097 647a0fef4bb21459eec928db4b1625e5 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.7E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_3097 647a0fef4bb21459eec928db4b1625e5 309 Gene3D G3DSA:3.40.190.10 92 289 1.7E-66 T 12-10-2018 Alide_3097 647a0fef4bb21459eec928db4b1625e5 309 SUPERFAMILY SSF46785 4 83 5.2E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3097 647a0fef4bb21459eec928db4b1625e5 309 Pfam PF03466 LysR substrate binding domain 88 293 9.3E-45 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0722 2f18879a362e2aa4781a82d0258a2ce7 652 Pfam PF13910 Domain of unknown function (DUF4209) 511 600 3.0E-12 T 12-10-2018 IPR025209 Domain of unknown function DUF4209 Alide_1785 c77ef8e75999add0b9fe497e1fcd3b8f 372 Pfam PF01266 FAD dependent oxidoreductase 13 341 1.2E-33 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_1785 c77ef8e75999add0b9fe497e1fcd3b8f 372 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 13 351 4.6E-77 T 12-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 Alide_1785 c77ef8e75999add0b9fe497e1fcd3b8f 372 Gene3D G3DSA:3.30.9.10 97 310 3.3E-51 T 12-10-2018 Alide_1785 c77ef8e75999add0b9fe497e1fcd3b8f 372 Gene3D G3DSA:3.50.50.60 14 348 3.3E-51 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_1785 c77ef8e75999add0b9fe497e1fcd3b8f 372 SUPERFAMILY SSF54373 220 309 2.75E-16 T 12-10-2018 Alide_1785 c77ef8e75999add0b9fe497e1fcd3b8f 372 SUPERFAMILY SSF51905 13 352 1.29E-21 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_0665 0a156b6285be70ab568111ca5e4dc347 387 Gene3D G3DSA:3.40.50.2000 194 355 1.3E-34 T 12-10-2018 Alide_0665 0a156b6285be70ab568111ca5e4dc347 387 SUPERFAMILY SSF53756 45 370 3.14E-26 T 12-10-2018 Alide_0665 0a156b6285be70ab568111ca5e4dc347 387 Gene3D G3DSA:3.40.50.11090 20 193 1.2E-15 T 12-10-2018 Alide_0665 0a156b6285be70ab568111ca5e4dc347 387 Pfam PF13692 Glycosyl transferases group 1 213 341 1.7E-7 T 12-10-2018 Alide_2985 4bbef1199f681a170efb0c975a7afd03 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 3.0E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2985 4bbef1199f681a170efb0c975a7afd03 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 3.0E-10 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2985 4bbef1199f681a170efb0c975a7afd03 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 7.8E-19 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2985 4bbef1199f681a170efb0c975a7afd03 205 Gene3D G3DSA:1.10.357.10 62 201 4.4E-26 T 12-10-2018 Alide_2985 4bbef1199f681a170efb0c975a7afd03 205 SUPERFAMILY SSF48498 89 202 8.56E-16 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_2985 4bbef1199f681a170efb0c975a7afd03 205 Gene3D G3DSA:1.10.10.60 5 61 7.7E-19 T 12-10-2018 Alide_2985 4bbef1199f681a170efb0c975a7afd03 205 SUPERFAMILY SSF46689 10 84 1.55E-19 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2985 4bbef1199f681a170efb0c975a7afd03 205 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 62 - T 12-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 Gene3D G3DSA:3.40.50.720 2 252 7.9E-80 T 12-10-2018 Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 3.1E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 3.1E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 3.1E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 249 4.2E-61 T 12-10-2018 Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 SUPERFAMILY SSF51735 8 250 1.61E-77 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 2.7E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.7E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.7E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.7E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.7E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3301 60a0fe095f4375be8a081d698bc6df7c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.7E-43 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_4421 a678abc0fb9c76e6dc3694e55bf8ca96 146 Gene3D G3DSA:3.30.230.10 1 136 1.5E-11 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_4421 a678abc0fb9c76e6dc3694e55bf8ca96 146 SUPERFAMILY SSF54211 2 123 4.8E-12 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_4421 a678abc0fb9c76e6dc3694e55bf8ca96 146 Pfam PF00825 Ribonuclease P 2 120 1.3E-13 T 12-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Alide_1145 fa24b8fe244953cdddcea89c277bffff 370 Gene3D G3DSA:1.10.3720.10 154 343 2.6E-38 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1145 fa24b8fe244953cdddcea89c277bffff 370 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 179 337 1.3E-27 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1145 fa24b8fe244953cdddcea89c277bffff 370 SUPERFAMILY SSF161098 156 340 4.19E-43 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2430 08ccd49070bcba86a9a8cb66b5db17fb 413 Pfam PF01757 Acyltransferase family 60 359 3.0E-24 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Alide_2294 11d09b25b71d03d4d1e78ee112f36add 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 218 5.4E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_2294 11d09b25b71d03d4d1e78ee112f36add 226 Pfam PF00072 Response regulator receiver domain 3 112 1.6E-23 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2294 11d09b25b71d03d4d1e78ee112f36add 226 SUPERFAMILY SSF52172 1 166 3.66E-34 T 12-10-2018 IPR011006 CheY-like superfamily Alide_2294 11d09b25b71d03d4d1e78ee112f36add 226 SMART SM00448 1 112 6.2E-32 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2294 11d09b25b71d03d4d1e78ee112f36add 226 SMART SM00862 145 218 9.7E-19 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_2294 11d09b25b71d03d4d1e78ee112f36add 226 Gene3D G3DSA:3.40.50.2300 1 121 1.7E-32 T 12-10-2018 Alide_2294 11d09b25b71d03d4d1e78ee112f36add 226 Gene3D G3DSA:1.10.10.10 124 223 9.0E-25 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 408 432 - T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 66 587 4.0E-201 T 12-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 Gene3D G3DSA:1.10.246.130 294 407 1.5E-45 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 Gene3D G3DSA:3.60.20.40 408 596 5.4E-80 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 88 113 1.9E-79 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 180 199 1.9E-79 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 408 426 1.9E-79 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 497 514 1.9E-79 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 432 450 1.9E-79 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 278 294 1.9E-79 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 473 488 1.9E-79 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 162 180 1.9E-79 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 308 327 1.9E-79 T 12-10-2018 Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 SUPERFAMILY SSF56235 58 596 4.63E-195 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_3091 91246e4099d5f1c66eec6c983dc756ee 596 Pfam PF01019 Gamma-glutamyltranspeptidase 81 588 2.8E-193 T 12-10-2018 Alide_0740 cee9e2fc874f0c0f66b6c5521e8f7296 366 Gene3D G3DSA:3.40.50.300 26 185 5.3E-9 T 12-10-2018 Alide_0740 cee9e2fc874f0c0f66b6c5521e8f7296 366 Pfam PF13401 AAA domain 43 171 6.4E-20 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0740 cee9e2fc874f0c0f66b6c5521e8f7296 366 PRINTS PR00364 Disease resistance protein signature 228 242 1.0E-4 T 12-10-2018 Alide_0740 cee9e2fc874f0c0f66b6c5521e8f7296 366 PRINTS PR00364 Disease resistance protein signature 45 60 1.0E-4 T 12-10-2018 Alide_0740 cee9e2fc874f0c0f66b6c5521e8f7296 366 PRINTS PR00364 Disease resistance protein signature 119 133 1.0E-4 T 12-10-2018 Alide_0740 cee9e2fc874f0c0f66b6c5521e8f7296 366 SUPERFAMILY SSF52540 5 265 4.85E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0740 cee9e2fc874f0c0f66b6c5521e8f7296 366 SMART SM00382 42 208 7.4E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0740 cee9e2fc874f0c0f66b6c5521e8f7296 366 TIGRFAM TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily 1 269 1.4E-121 T 12-10-2018 IPR017466 ATPase, secretion system, PEP-CTERM, predicted Alide_2723 4da9e757d77f48339375a7476d68fcf9 72 Gene3D G3DSA:1.10.238.160 20 72 3.9E-6 T 12-10-2018 Alide_2723 4da9e757d77f48339375a7476d68fcf9 72 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 14 64 2.3E-25 T 12-10-2018 IPR010260 DNA-binding transcriptional activator AlpA Alide_4027 dfc87b7f167947537aa7d7b34726b257 960 TIGRFAM TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family 56 951 0.0 T 12-10-2018 IPR022303 Conjugative transfer ATPase Alide_4027 dfc87b7f167947537aa7d7b34726b257 960 SUPERFAMILY SSF52540 484 881 2.34E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4027 dfc87b7f167947537aa7d7b34726b257 960 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 67 340 2.9E-74 T 12-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase Alide_4027 dfc87b7f167947537aa7d7b34726b257 960 Gene3D G3DSA:3.40.50.300 714 910 3.1E-17 T 12-10-2018 Alide_4027 dfc87b7f167947537aa7d7b34726b257 960 Gene3D G3DSA:3.40.50.300 510 712 6.9E-9 T 12-10-2018 Alide_4216 f880d1c6df53092f2f399d692bd4c7d0 377 Pfam PF00005 ABC transporter 35 177 1.2E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_4216 f880d1c6df53092f2f399d692bd4c7d0 377 Gene3D G3DSA:2.40.50.940 238 371 7.9E-9 T 12-10-2018 Alide_4216 f880d1c6df53092f2f399d692bd4c7d0 377 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_4216 f880d1c6df53092f2f399d692bd4c7d0 377 TIGRFAM TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein 18 371 6.6E-155 T 12-10-2018 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 GO:0005524 Alide_4216 f880d1c6df53092f2f399d692bd4c7d0 377 Gene3D G3DSA:3.40.50.300 19 237 8.6E-69 T 12-10-2018 Alide_4216 f880d1c6df53092f2f399d692bd4c7d0 377 SMART SM00382 44 227 3.4E-19 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4216 f880d1c6df53092f2f399d692bd4c7d0 377 SUPERFAMILY SSF50331 253 370 1.98E-7 T 12-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Alide_4216 f880d1c6df53092f2f399d692bd4c7d0 377 Gene3D G3DSA:2.40.50.140 297 362 7.9E-9 T 12-10-2018 Alide_4216 f880d1c6df53092f2f399d692bd4c7d0 377 SUPERFAMILY SSF52540 20 257 1.24E-86 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2310 529ec230bd23ff715578deab867a539a 330 PIRSF PIRSF017082 2 329 3.1E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2310 529ec230bd23ff715578deab867a539a 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 326 1.0E-82 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2310 529ec230bd23ff715578deab867a539a 330 SUPERFAMILY SSF53850 57 293 4.74E-13 T 12-10-2018 Alide_2310 529ec230bd23ff715578deab867a539a 330 Gene3D G3DSA:3.40.190.150 34 320 4.8E-108 T 12-10-2018 Alide_2310 529ec230bd23ff715578deab867a539a 330 Gene3D G3DSA:3.40.190.10 132 255 4.8E-108 T 12-10-2018 Alide_1250 d5de685facecb40510552989a212c281 238 Pfam PF00717 Peptidase S24-like 152 209 5.0E-7 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Alide_1250 d5de685facecb40510552989a212c281 238 SUPERFAMILY SSF47413 17 77 2.08E-7 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_1250 d5de685facecb40510552989a212c281 238 Gene3D G3DSA:2.10.109.10 109 235 7.6E-9 T 12-10-2018 Alide_1250 d5de685facecb40510552989a212c281 238 Gene3D G3DSA:1.10.260.40 9 83 3.5E-7 T 12-10-2018 Alide_1250 d5de685facecb40510552989a212c281 238 SUPERFAMILY SSF51306 101 231 1.96E-16 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_1772 e8fe58a5e5668de51662616f4b0dd425 364 Gene3D G3DSA:3.40.710.10 79 352 1.6E-64 T 12-10-2018 Alide_1772 e8fe58a5e5668de51662616f4b0dd425 364 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 101 327 1.5E-56 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Alide_1772 e8fe58a5e5668de51662616f4b0dd425 364 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 185 202 3.4E-12 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Alide_1772 e8fe58a5e5668de51662616f4b0dd425 364 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 212 225 3.4E-12 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Alide_1772 e8fe58a5e5668de51662616f4b0dd425 364 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 135 146 3.4E-12 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Alide_1772 e8fe58a5e5668de51662616f4b0dd425 364 SUPERFAMILY SSF56601 107 344 3.24E-58 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Alide_3380 40d74e24b89f4ac953833148d276da12 398 SUPERFAMILY SSF81342 164 377 2.67E-42 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_3380 40d74e24b89f4ac953833148d276da12 398 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 167 369 5.0E-47 T 12-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 Alide_3380 40d74e24b89f4ac953833148d276da12 398 Gene3D G3DSA:1.20.950.20 163 379 2.7E-57 T 12-10-2018 Alide_3380 40d74e24b89f4ac953833148d276da12 398 Pfam PF01292 Prokaryotic cytochrome b561 170 351 6.4E-18 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Alide_4490 26138f59139c67fcc146af80f519503c 78 Pfam PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ 11 78 4.9E-27 T 12-10-2018 IPR004386 Toxin-antitoxin system, YafQ-like toxin Alide_4490 26138f59139c67fcc146af80f519503c 78 SUPERFAMILY SSF143011 13 77 1.69E-19 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Alide_4490 26138f59139c67fcc146af80f519503c 78 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 9 77 1.3E-19 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Alide_4490 26138f59139c67fcc146af80f519503c 78 PIRSF PIRSF006156 8 78 1.2E-24 T 12-10-2018 IPR004386 Toxin-antitoxin system, YafQ-like toxin Alide_4490 26138f59139c67fcc146af80f519503c 78 Gene3D G3DSA:3.30.2310.20 3 78 1.7E-26 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Alide_1034 47b43cd77de0d85bb39ece6d2ab1994e 174 Pfam PF06841 T4-like virus tail tube protein gp19 15 157 2.9E-46 T 12-10-2018 IPR010667 Bacteriophage T4, Gp19, tail tube GO:0005198 Alide_1034 47b43cd77de0d85bb39ece6d2ab1994e 174 TIGRFAM TIGR02241 TIGR02241: conserved hypothetical phage tail region protein 12 158 5.1E-46 T 12-10-2018 IPR011747 Conserved hypothetical protein CHP02241 Alide_0681 85343f01d0f6f122c4023ae41e630be1 185 Pfam PF04519 Polymer-forming cytoskeletal 59 154 9.4E-18 T 12-10-2018 IPR007607 Bactofilin A/B Alide_1927 caa077793e941144605f5bda5ca5f627 364 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Alide_1927 caa077793e941144605f5bda5ca5f627 364 Pfam PF01264 Chorismate synthase 10 344 7.1E-128 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Alide_1927 caa077793e941144605f5bda5ca5f627 364 TIGRFAM TIGR00033 aroC: chorismate synthase 11 349 9.0E-130 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Alide_1927 caa077793e941144605f5bda5ca5f627 364 PIRSF PIRSF001456 3 358 5.1E-129 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Alide_1927 caa077793e941144605f5bda5ca5f627 364 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Alide_1927 caa077793e941144605f5bda5ca5f627 364 ProSitePatterns PS00789 Chorismate synthase signature 3. 318 334 - T 12-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Alide_1927 caa077793e941144605f5bda5ca5f627 364 Hamap MF_00300 Chorismate synthase [aroC]. 10 353 34.598 T 12-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Alide_1927 caa077793e941144605f5bda5ca5f627 364 SUPERFAMILY SSF103263 4 351 1.02E-136 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Alide_1927 caa077793e941144605f5bda5ca5f627 364 Gene3D G3DSA:3.60.150.10 1 361 1.4E-140 T 12-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Alide_0876 a0eec06c7906e6a0b32fbb5476638b33 150 Pfam PF01850 PIN domain 7 118 5.9E-7 T 12-10-2018 IPR002716 PIN domain Alide_0876 a0eec06c7906e6a0b32fbb5476638b33 150 Gene3D G3DSA:3.40.50.1010 6 121 2.3E-5 T 12-10-2018 Alide_0876 a0eec06c7906e6a0b32fbb5476638b33 150 SUPERFAMILY SSF88723 4 121 5.1E-13 T 12-10-2018 IPR029060 PIN-like domain superfamily Alide_4372 4bdd6675ac09336fc2cc8c33d4e90c09 418 PIRSF PIRSF001235 10 418 2.3E-139 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 Alide_4372 4bdd6675ac09336fc2cc8c33d4e90c09 418 Gene3D G3DSA:3.40.630.10 25 407 2.2E-152 T 12-10-2018 Alide_4372 4bdd6675ac09336fc2cc8c33d4e90c09 418 Gene3D G3DSA:3.30.70.360 218 332 2.2E-152 T 12-10-2018 Alide_4372 4bdd6675ac09336fc2cc8c33d4e90c09 418 SUPERFAMILY SSF55031 218 333 2.36E-32 T 12-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Alide_4372 4bdd6675ac09336fc2cc8c33d4e90c09 418 Pfam PF07687 Peptidase dimerisation domain 218 317 3.6E-6 T 12-10-2018 IPR011650 Peptidase M20, dimerisation domain Alide_4372 4bdd6675ac09336fc2cc8c33d4e90c09 418 SUPERFAMILY SSF53187 2 413 1.49E-94 T 12-10-2018 Alide_4372 4bdd6675ac09336fc2cc8c33d4e90c09 418 Pfam PF01546 Peptidase family M20/M25/M40 86 411 2.0E-37 T 12-10-2018 IPR002933 Peptidase M20 GO:0016787 Alide_4372 4bdd6675ac09336fc2cc8c33d4e90c09 418 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 17 411 1.2E-133 T 12-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 Alide_0865 5c76d7700fe78e1665ba638d342d19c0 246 Pfam PF04333 MlaA lipoprotein 36 227 4.1E-74 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Alide_0865 5c76d7700fe78e1665ba638d342d19c0 246 PRINTS PR01805 VacJ lipoprotein signature 141 158 3.1E-27 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Alide_0865 5c76d7700fe78e1665ba638d342d19c0 246 PRINTS PR01805 VacJ lipoprotein signature 37 50 3.1E-27 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Alide_0865 5c76d7700fe78e1665ba638d342d19c0 246 PRINTS PR01805 VacJ lipoprotein signature 105 122 3.1E-27 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Alide_0865 5c76d7700fe78e1665ba638d342d19c0 246 PRINTS PR01805 VacJ lipoprotein signature 54 70 3.1E-27 T 12-10-2018 IPR007428 MlaA lipoprotein GO:0016020 Alide_3893 854c79416069878502c6fe7e588df76f 310 SUPERFAMILY SSF103481 205 302 3.79E-11 T 12-10-2018 Alide_3893 854c79416069878502c6fe7e588df76f 310 SUPERFAMILY SSF103481 60 154 1.57E-8 T 12-10-2018 Alide_3893 854c79416069878502c6fe7e588df76f 310 Pfam PF00892 EamA-like transporter family 174 301 4.5E-11 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_3893 854c79416069878502c6fe7e588df76f 310 Pfam PF00892 EamA-like transporter family 19 149 2.3E-12 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_2056 e8a9ce9b0c24416697391e89a44906b2 606 Pfam PF00665 Integrase core domain 153 294 1.7E-10 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_2056 e8a9ce9b0c24416697391e89a44906b2 606 Gene3D G3DSA:3.30.420.10 186 326 4.3E-6 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_2056 e8a9ce9b0c24416697391e89a44906b2 606 SUPERFAMILY SSF53098 196 323 4.93E-11 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_2090 11a42c0119de5c309eb8dfe37282700f 103 Pfam PF08809 Phage related hypothetical protein (DUF1799) 22 95 1.5E-15 T 12-10-2018 IPR014915 Bacteriophage TLS, TfmB Alide_0331 6e858ad37492f894bc7811b86150f1d7 143 SUPERFAMILY SSF143744 5 139 7.06E-38 T 12-10-2018 IPR038084 GlcG-like domain superfamily Alide_0331 6e858ad37492f894bc7811b86150f1d7 143 Gene3D G3DSA:3.30.450.150 1 142 4.5E-43 T 12-10-2018 IPR038084 GlcG-like domain superfamily Alide_0331 6e858ad37492f894bc7811b86150f1d7 143 Pfam PF03928 Haem-degrading 10 135 3.2E-31 T 12-10-2018 IPR005624 Haem-degrading Alide_1758 998f4704c36ea32f121451b60ab63b9e 274 Pfam PF11304 Protein of unknown function (DUF3106) 73 172 5.0E-30 T 12-10-2018 IPR021455 Protein of unknown function DUF3106 Alide_3056 c66564538b799bc190377e36b2dbb821 224 SUPERFAMILY SSF46689 13 97 5.64E-16 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3056 c66564538b799bc190377e36b2dbb821 224 Gene3D G3DSA:1.10.357.10 16 216 1.5E-45 T 12-10-2018 Alide_3056 c66564538b799bc190377e36b2dbb821 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 72 2.8E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_3056 c66564538b799bc190377e36b2dbb821 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 1.9E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_3056 c66564538b799bc190377e36b2dbb821 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 1.9E-6 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2860 ec17da2d85b1cc5f9acd1c2098b939f4 790 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 421 589 5.0E-39 T 12-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 Alide_2860 ec17da2d85b1cc5f9acd1c2098b939f4 790 SUPERFAMILY SSF52518 76 359 1.18E-18 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2860 ec17da2d85b1cc5f9acd1c2098b939f4 790 Pfam PF09364 XFP N-terminal domain 54 295 6.3E-12 T 12-10-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal Alide_2860 ec17da2d85b1cc5f9acd1c2098b939f4 790 Gene3D G3DSA:3.40.50.970 38 393 2.3E-56 T 12-10-2018 Alide_2860 ec17da2d85b1cc5f9acd1c2098b939f4 790 Gene3D G3DSA:3.40.50.970 415 622 6.9E-42 T 12-10-2018 Alide_0412 29de612fdbe3a0c9a607347380c85d2f 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 203 2.2E-68 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0412 29de612fdbe3a0c9a607347380c85d2f 206 Pfam PF00573 Ribosomal protein L4/L1 family 16 203 7.1E-62 T 12-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 Alide_0412 29de612fdbe3a0c9a607347380c85d2f 206 SUPERFAMILY SSF52166 1 205 2.35E-68 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Alide_0412 29de612fdbe3a0c9a607347380c85d2f 206 Gene3D G3DSA:3.40.1370.10 2 206 3.3E-65 T 12-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Alide_0412 29de612fdbe3a0c9a607347380c85d2f 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 30.765 T 12-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_4414 200b7509e3670a652555fed6c3ad907f 332 Gene3D G3DSA:3.60.20.30 199 332 6.2E-52 T 12-10-2018 Alide_4414 200b7509e3670a652555fed6c3ad907f 332 SUPERFAMILY SSF56235 12 329 5.66E-91 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_4414 200b7509e3670a652555fed6c3ad907f 332 Pfam PF01112 Asparaginase 13 331 1.3E-110 T 12-10-2018 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 Alide_0585 a4c74c69c12b54ebd0225e350ae2c7d3 240 PRINTS PR01837 MgtC/SapB protein signature 94 118 1.3E-39 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Alide_0585 a4c74c69c12b54ebd0225e350ae2c7d3 240 PRINTS PR01837 MgtC/SapB protein signature 41 59 1.3E-39 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Alide_0585 a4c74c69c12b54ebd0225e350ae2c7d3 240 PRINTS PR01837 MgtC/SapB protein signature 22 41 1.3E-39 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Alide_0585 a4c74c69c12b54ebd0225e350ae2c7d3 240 PRINTS PR01837 MgtC/SapB protein signature 67 89 1.3E-39 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Alide_0585 a4c74c69c12b54ebd0225e350ae2c7d3 240 Pfam PF02308 MgtC family 19 139 2.1E-32 T 12-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Alide_0585 a4c74c69c12b54ebd0225e350ae2c7d3 240 Gene3D G3DSA:3.30.70.260 149 239 4.4E-6 T 12-10-2018 Alide_0802 5e8def4a96bae817acb279638e7eb57f 188 SMART SM00855 3 156 1.8E-6 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_0802 5e8def4a96bae817acb279638e7eb57f 188 Gene3D G3DSA:3.40.50.1240 2 187 1.0E-25 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_0802 5e8def4a96bae817acb279638e7eb57f 188 SUPERFAMILY SSF53254 3 165 9.21E-28 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_0802 5e8def4a96bae817acb279638e7eb57f 188 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 157 4.2E-21 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_1303 59cfb39c3062b8e286e8bafb7e67776a 294 Gene3D G3DSA:3.40.50.1820 51 291 6.1E-61 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1303 59cfb39c3062b8e286e8bafb7e67776a 294 SUPERFAMILY SSF53474 58 291 1.41E-44 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1303 59cfb39c3062b8e286e8bafb7e67776a 294 Pfam PF01738 Dienelactone hydrolase family 68 291 4.2E-62 T 12-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 Alide_4515 838e915da459c1684197d24c261080dc 356 SUPERFAMILY SSF110849 78 170 2.62E-7 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Alide_4515 838e915da459c1684197d24c261080dc 356 SUPERFAMILY SSF109709 167 257 7.46E-6 T 12-10-2018 Alide_0029 ec227603765967db5109eb3e3277f6e9 201 Gene3D G3DSA:2.40.160.20 48 200 6.1E-34 T 12-10-2018 Alide_0029 ec227603765967db5109eb3e3277f6e9 201 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 65 199 2.3E-32 T 12-10-2018 IPR018550 Lipid A 3-O-deacylase-related Alide_3816 15a097c6735667a4435dbacb95d497a1 263 SUPERFAMILY SSF55729 40 224 3.81E-10 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_3816 15a097c6735667a4435dbacb95d497a1 263 Gene3D G3DSA:3.40.630.30 41 219 7.7E-13 T 12-10-2018 Alide_2343 5b3ae6da851f1b8516820f418885cf78 323 PIRSF PIRSF006470 1 323 8.1E-105 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Alide_2343 5b3ae6da851f1b8516820f418885cf78 323 Gene3D G3DSA:3.40.190.170 21 323 8.3E-131 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Alide_2343 5b3ae6da851f1b8516820f418885cf78 323 SUPERFAMILY SSF53850 139 270 6.37E-5 T 12-10-2018 Alide_2343 5b3ae6da851f1b8516820f418885cf78 323 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 282 3.4E-80 T 12-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Alide_2343 5b3ae6da851f1b8516820f418885cf78 323 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 30 309 1.3E-92 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Alide_0006 fcf1ef900dcc86efd13c76619c2fa67a 285 Gene3D G3DSA:3.90.226.10 9 213 3.8E-55 T 12-10-2018 Alide_0006 fcf1ef900dcc86efd13c76619c2fa67a 285 Gene3D G3DSA:1.10.12.10 214 277 3.5E-11 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_0006 fcf1ef900dcc86efd13c76619c2fa67a 285 SUPERFAMILY SSF52096 8 274 7.66E-58 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0006 fcf1ef900dcc86efd13c76619c2fa67a 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 275 3.4E-33 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_2876 95b57fd5e20fb7273624ac22d23863bd 195 Pfam PF10502 Signal peptidase, peptidase S26 46 191 6.4E-54 T 12-10-2018 IPR019533 Peptidase S26 Alide_2876 95b57fd5e20fb7273624ac22d23863bd 195 Gene3D G3DSA:2.10.109.10 77 191 1.4E-5 T 12-10-2018 Alide_2876 95b57fd5e20fb7273624ac22d23863bd 195 SUPERFAMILY SSF51306 48 190 7.32E-20 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_4500 cf0814209b547b371a6bdf6e478e5ea6 81 Pfam PF11431 Membrane transport protein MerF 24 67 6.0E-26 T 12-10-2018 IPR021091 Mercury ion transport, MerF Alide_4500 cf0814209b547b371a6bdf6e478e5ea6 81 Gene3D G3DSA:1.20.58.2000 1 81 1.7E-44 T 12-10-2018 Alide_2768 ec13996146c234b1e4e8627b102e7c80 273 Pfam PF05013 N-formylglutamate amidohydrolase 16 236 3.7E-69 T 12-10-2018 IPR007709 N-formylglutamate amidohydrolase Alide_2768 ec13996146c234b1e4e8627b102e7c80 273 SUPERFAMILY SSF53187 7 267 3.04E-82 T 12-10-2018 Alide_2768 ec13996146c234b1e4e8627b102e7c80 273 Gene3D G3DSA:3.40.630.40 4 268 8.1E-73 T 12-10-2018 Alide_2768 ec13996146c234b1e4e8627b102e7c80 273 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 9 267 3.1E-105 T 12-10-2018 IPR010247 N-formylglutamate deformylase Alide_1398 8ca0eae613342e6f9295ec1d43aca25e 361 Pfam PF01594 AI-2E family transporter 31 357 7.8E-11 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like Alide_4176 c153e8aaac233f58fd87b601637da358 323 SUPERFAMILY SSF53850 116 284 4.34E-11 T 12-10-2018 Alide_4176 c153e8aaac233f58fd87b601637da358 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 319 2.3E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4176 c153e8aaac233f58fd87b601637da358 323 Gene3D G3DSA:3.40.190.10 125 248 2.2E-104 T 12-10-2018 Alide_4176 c153e8aaac233f58fd87b601637da358 323 Gene3D G3DSA:3.40.190.150 29 313 2.2E-104 T 12-10-2018 Alide_4176 c153e8aaac233f58fd87b601637da358 323 PIRSF PIRSF017082 1 322 1.4E-69 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0392 1522e5aada40a070b6d95df81122ec22 211 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 6 201 7.1E-50 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Alide_0392 1522e5aada40a070b6d95df81122ec22 211 Pfam PF01914 MarC family integral membrane protein 6 205 2.9E-50 T 12-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 Alide_1402 b2a849cd202f738c17f2bede4f4f06b3 224 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 191 5.7E-38 T 12-10-2018 Alide_1402 b2a849cd202f738c17f2bede4f4f06b3 224 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 193 1.2E-26 T 12-10-2018 Alide_1402 b2a849cd202f738c17f2bede4f4f06b3 224 Gene3D G3DSA:1.20.1440.100 15 88 9.0E-75 T 12-10-2018 Alide_1402 b2a849cd202f738c17f2bede4f4f06b3 224 Gene3D G3DSA:3.40.50.1000 3 217 9.0E-75 T 12-10-2018 IPR023214 HAD superfamily Alide_1402 b2a849cd202f738c17f2bede4f4f06b3 224 SUPERFAMILY SSF56784 1 207 4.91E-35 T 12-10-2018 IPR036412 HAD-like superfamily Alide_1402 b2a849cd202f738c17f2bede4f4f06b3 224 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 205 7.7E-44 T 12-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 Gene3D G3DSA:3.40.50.720 1 260 2.3E-76 T 12-10-2018 Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 5 260 4.1E-107 T 12-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 9.5E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 9.5E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 9.5E-13 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 Pfam PF00106 short chain dehydrogenase 5 199 1.2E-55 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.1E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_1315 8e81d0f7e25e3a1203612790a523d220 260 SUPERFAMILY SSF51735 3 258 4.03E-71 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3519 b8058d24bf806ea4f5aa885843986552 280 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 29 176 2.6E-12 T 12-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Alide_3519 b8058d24bf806ea4f5aa885843986552 280 SUPERFAMILY SSF52540 8 246 1.71E-34 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3519 b8058d24bf806ea4f5aa885843986552 280 SMART SM00382 25 183 9.8E-6 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3519 b8058d24bf806ea4f5aa885843986552 280 Gene3D G3DSA:3.40.50.300 1 203 6.2E-25 T 12-10-2018 Alide_3043 a78ecad83a35f6b17d79e039f3a442a9 222 SUPERFAMILY SSF46785 1 80 5.29E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3043 a78ecad83a35f6b17d79e039f3a442a9 222 Gene3D G3DSA:1.10.10.10 81 175 8.2E-32 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3043 a78ecad83a35f6b17d79e039f3a442a9 222 Gene3D G3DSA:1.10.10.10 2 80 1.4E-12 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3043 a78ecad83a35f6b17d79e039f3a442a9 222 Pfam PF04079 Segregation and condensation complex subunit ScpB 9 166 5.3E-49 T 12-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Alide_3043 a78ecad83a35f6b17d79e039f3a442a9 222 PIRSF PIRSF019345 1 199 8.4E-53 T 12-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Alide_3043 a78ecad83a35f6b17d79e039f3a442a9 222 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 9 169 5.0E-33 T 12-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Alide_3043 a78ecad83a35f6b17d79e039f3a442a9 222 SUPERFAMILY SSF46785 83 158 3.95E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1070 586010c82822f804f9c030803ec7fc62 809 Gene3D G3DSA:3.90.1170.50 42 165 1.1E-271 T 12-10-2018 Alide_1070 586010c82822f804f9c030803ec7fc62 809 Gene3D G3DSA:3.30.365.10 166 802 1.1E-271 T 12-10-2018 Alide_1070 586010c82822f804f9c030803ec7fc62 809 SUPERFAMILY SSF56003 165 804 3.53E-194 T 12-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 Alide_1070 586010c82822f804f9c030803ec7fc62 809 Gene3D G3DSA:3.30.365.10 220 314 1.1E-271 T 12-10-2018 Alide_1070 586010c82822f804f9c030803ec7fc62 809 SMART SM01008 56 163 2.3E-41 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Alide_1070 586010c82822f804f9c030803ec7fc62 809 Gene3D G3DSA:3.30.365.10 491 637 1.1E-271 T 12-10-2018 Alide_1070 586010c82822f804f9c030803ec7fc62 809 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 56 155 2.0E-21 T 12-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Alide_1070 586010c82822f804f9c030803ec7fc62 809 SUPERFAMILY SSF54665 40 155 3.53E-36 T 12-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily Alide_1070 586010c82822f804f9c030803ec7fc62 809 Gene3D G3DSA:3.30.365.10 179 439 1.1E-271 T 12-10-2018 Alide_1070 586010c82822f804f9c030803ec7fc62 809 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 42 807 0.0 T 12-10-2018 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 Alide_1070 586010c82822f804f9c030803ec7fc62 809 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 199 736 1.1E-192 T 12-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Alide_3927 a358e6ee414cfc59c37bcef771e600ae 375 Pfam PF03781 Sulfatase-modifying factor enzyme 1 59 367 2.1E-79 T 12-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 Alide_3927 a358e6ee414cfc59c37bcef771e600ae 375 Gene3D G3DSA:3.90.1580.10 55 373 7.0E-100 T 12-10-2018 Alide_3927 a358e6ee414cfc59c37bcef771e600ae 375 SUPERFAMILY SSF56436 57 370 6.22E-79 T 12-10-2018 IPR016187 C-type lectin fold Alide_1436 2bea67ce19a13308cee6a252e226cade 408 Gene3D G3DSA:3.30.2320.10 264 400 2.3E-13 T 12-10-2018 Alide_1436 2bea67ce19a13308cee6a252e226cade 408 SUPERFAMILY SSF56563 128 404 3.92E-44 T 12-10-2018 Alide_1436 2bea67ce19a13308cee6a252e226cade 408 Pfam PF05065 Phage capsid family 136 404 3.8E-41 T 12-10-2018 IPR024455 Phage capsid Alide_1436 2bea67ce19a13308cee6a252e226cade 408 Gene3D G3DSA:3.30.2400.10 183 395 2.3E-13 T 12-10-2018 Alide_1436 2bea67ce19a13308cee6a252e226cade 408 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 4 403 4.1E-35 T 12-10-2018 IPR024455 Phage capsid Alide_1013 31428483552870a392fd0279a4dd480e 245 SUPERFAMILY SSF55666 159 243 2.36E-24 T 12-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1013 31428483552870a392fd0279a4dd480e 245 Pfam PF03725 3' exoribonuclease family, domain 2 165 231 1.2E-10 T 12-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1013 31428483552870a392fd0279a4dd480e 245 SUPERFAMILY SSF54211 9 187 4.71E-44 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_1013 31428483552870a392fd0279a4dd480e 245 ProSitePatterns PS01277 Ribonuclease PH signature. 123 136 - T 12-10-2018 IPR018336 Ribonuclease PH, conserved site Alide_1013 31428483552870a392fd0279a4dd480e 245 Gene3D G3DSA:3.30.230.70 16 244 4.7E-60 T 12-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1013 31428483552870a392fd0279a4dd480e 245 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 9 243 1.2E-116 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Alide_1013 31428483552870a392fd0279a4dd480e 245 Pfam PF01138 3' exoribonuclease family, domain 1 17 147 1.7E-22 T 12-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Alide_1013 31428483552870a392fd0279a4dd480e 245 Hamap MF_00564 Ribonuclease PH [rph]. 18 244 44.614 T 12-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Alide_2514 4a442ca1ecd3f1f88ba695999c5b8da1 303 Pfam PF13302 Acetyltransferase (GNAT) domain 17 145 3.0E-12 T 12-10-2018 IPR000182 GNAT domain Alide_2514 4a442ca1ecd3f1f88ba695999c5b8da1 303 SUPERFAMILY SSF54534 219 294 8.76E-13 T 12-10-2018 Alide_2514 4a442ca1ecd3f1f88ba695999c5b8da1 303 SUPERFAMILY SSF55729 12 150 3.9E-15 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_2514 4a442ca1ecd3f1f88ba695999c5b8da1 303 Gene3D G3DSA:3.10.50.30 215 303 1.2E-21 T 12-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Alide_2514 4a442ca1ecd3f1f88ba695999c5b8da1 303 Gene3D G3DSA:3.40.630.30 6 173 1.3E-18 T 12-10-2018 Alide_2514 4a442ca1ecd3f1f88ba695999c5b8da1 303 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 221 293 1.3E-13 T 12-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Alide_2514 4a442ca1ecd3f1f88ba695999c5b8da1 303 Pfam PF14760 Rnk N-terminus 179 214 7.4E-8 T 12-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 128 156 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 6.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 6.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 6.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 6.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 6.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 6.3E-38 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 SUPERFAMILY SSF51735 9 236 1.36E-64 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 235 1.7E-46 T 12-10-2018 Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 Gene3D G3DSA:3.40.50.720 2 238 4.9E-63 T 12-10-2018 Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 1.3E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 1.3E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3511 e5fd781d40818f1c7b453f67fca9259d 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 160 1.3E-9 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1392 e6a2f1a861aa7051cccacd32409db762 181 SUPERFAMILY SSF89562 37 134 6.15E-25 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_1392 e6a2f1a861aa7051cccacd32409db762 181 Pfam PF03737 Aldolase/RraA 39 124 8.0E-19 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_1392 e6a2f1a861aa7051cccacd32409db762 181 Gene3D G3DSA:3.50.30.100 34 146 3.5E-31 T 12-10-2018 Alide_2286 318ba43520c0805a05c5b7bff50d41af 478 Gene3D G3DSA:1.10.260.40 1 78 2.7E-16 T 12-10-2018 Alide_2286 318ba43520c0805a05c5b7bff50d41af 478 Pfam PF01381 Helix-turn-helix 5 58 1.3E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_2286 318ba43520c0805a05c5b7bff50d41af 478 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 319 474 4.3E-64 T 12-10-2018 IPR018653 Domain of unknown function DUF2083,transcriptional regulator Alide_2286 318ba43520c0805a05c5b7bff50d41af 478 Pfam PF06114 IrrE N-terminal-like domain 195 317 2.3E-15 T 12-10-2018 IPR010359 IrrE N-terminal-like domain Alide_2286 318ba43520c0805a05c5b7bff50d41af 478 SMART SM00530 4 59 1.4E-14 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_2286 318ba43520c0805a05c5b7bff50d41af 478 PIRSF PIRSF019251 1 477 1.5E-164 T 12-10-2018 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 Alide_2286 318ba43520c0805a05c5b7bff50d41af 478 SUPERFAMILY SSF47413 2 61 4.29E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_4362 262853f24e72a03fb9af654626b5a1af 314 SUPERFAMILY SSF53850 100 310 2.95E-23 T 12-10-2018 Alide_4362 262853f24e72a03fb9af654626b5a1af 314 Pfam PF03466 LysR substrate binding domain 108 309 1.6E-23 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_4362 262853f24e72a03fb9af654626b5a1af 314 Gene3D G3DSA:3.40.190.290 109 312 9.5E-16 T 12-10-2018 Alide_4362 262853f24e72a03fb9af654626b5a1af 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 80 4.0E-14 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_4362 262853f24e72a03fb9af654626b5a1af 314 SUPERFAMILY SSF46785 19 103 1.42E-17 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4362 262853f24e72a03fb9af654626b5a1af 314 Gene3D G3DSA:1.10.10.10 19 107 2.5E-18 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 92 102 - T 12-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 PRINTS PR00139 Asparaginase/glutaminase family signature 9 20 1.5E-15 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 PRINTS PR00139 Asparaginase/glutaminase family signature 271 289 1.5E-15 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 PRINTS PR00139 Asparaginase/glutaminase family signature 91 109 1.5E-15 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 PIRSF PIRSF001220 4 320 6.0E-66 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 Pfam PF00710 Asparaginase, N-terminal 8 198 8.6E-53 T 12-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 PIRSF PIRSF500176 5 316 2.0E-62 T 12-10-2018 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 Gene3D G3DSA:3.40.50.40 224 320 2.4E-27 T 12-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 SUPERFAMILY SSF53774 5 317 3.01E-81 T 12-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 Gene3D G3DSA:3.40.50.1170 4 210 6.6E-70 T 12-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 SMART SM00870 8 318 4.0E-104 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_2631 e033be6a6ff69084b79af5703497d6ee 320 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 11 19 - T 12-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 Alide_1160 b30df8b7d7f5aa7707a87c7f83f0aa2a 503 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 441 4.5E-149 T 12-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane Alide_3984 5edfac3d30afdcaf794eabce5aeedacd 367 SUPERFAMILY SSF111337 9 358 1.18E-123 T 12-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Alide_3984 5edfac3d30afdcaf794eabce5aeedacd 367 Gene3D G3DSA:2.40.10.240 69 184 3.2E-104 T 12-10-2018 Alide_3984 5edfac3d30afdcaf794eabce5aeedacd 367 Pfam PF02547 Queuosine biosynthesis protein 10 358 1.8E-122 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Alide_3984 5edfac3d30afdcaf794eabce5aeedacd 367 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 9 358 3.2E-119 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Alide_3984 5edfac3d30afdcaf794eabce5aeedacd 367 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 8 359 43.975 T 12-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Alide_3984 5edfac3d30afdcaf794eabce5aeedacd 367 Gene3D G3DSA:3.40.1780.10 21 358 3.2E-104 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 SUPERFAMILY SSF52021 11 146 4.05E-56 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2505 f66b79137ed9aa96211736c24a868357 392 Gene3D G3DSA:3.50.30.20 10 157 4.6E-56 T 12-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2505 f66b79137ed9aa96211736c24a868357 392 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 12 139 2.7E-52 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2505 f66b79137ed9aa96211736c24a868357 392 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 12 385 4.2E-139 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2505 f66b79137ed9aa96211736c24a868357 392 SMART SM01097 10 140 1.1E-90 T 12-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2505 f66b79137ed9aa96211736c24a868357 392 Gene3D G3DSA:3.40.50.880 165 386 5.2E-70 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00096 Glutamine amidotransferase superfamily signature 274 285 1.0E-10 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00096 Glutamine amidotransferase superfamily signature 359 372 1.0E-10 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00096 Glutamine amidotransferase superfamily signature 246 255 1.0E-10 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 Pfam PF00117 Glutamine amidotransferase class-I 207 381 6.6E-44 T 12-10-2018 IPR017926 Glutamine amidotransferase Alide_2505 f66b79137ed9aa96211736c24a868357 392 SUPERFAMILY SSF52317 168 386 6.52E-58 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00097 Anthranilate synthase component II signature 246 255 1.9E-5 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00097 Anthranilate synthase component II signature 359 372 1.9E-5 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00097 Anthranilate synthase component II signature 274 285 1.9E-5 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 10 388 46.685 T 12-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 316 327 1.5E-38 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 204 218 1.5E-38 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 291 308 1.5E-38 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 243 257 1.5E-38 T 12-10-2018 Alide_2505 f66b79137ed9aa96211736c24a868357 392 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 274 290 1.5E-38 T 12-10-2018 Alide_0599 d604818c9c8314376ffd1d619cc23b67 463 SUPERFAMILY SSF53756 2 456 9.42E-144 T 12-10-2018 Alide_0599 d604818c9c8314376ffd1d619cc23b67 463 Pfam PF00982 Glycosyltransferase family 20 16 455 8.4E-129 T 12-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 Alide_0599 d604818c9c8314376ffd1d619cc23b67 463 Gene3D G3DSA:3.40.50.2000 19 451 2.5E-155 T 12-10-2018 Alide_0599 d604818c9c8314376ffd1d619cc23b67 463 Gene3D G3DSA:3.40.50.2000 232 440 2.5E-155 T 12-10-2018 Alide_2423 3c8c63bb91410a5444f0782745f6a368 500 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 34 491 3.2E-181 T 12-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 Alide_2423 3c8c63bb91410a5444f0782745f6a368 500 Pfam PF01458 Uncharacterized protein family (UPF0051) 238 471 6.4E-65 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 Alide_2423 3c8c63bb91410a5444f0782745f6a368 500 SUPERFAMILY SSF101960 54 497 2.09E-132 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily Alide_0061 8b99180da1305b37c37f77a59b3ebe04 474 SUPERFAMILY SSF56176 15 231 4.25E-70 T 12-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Alide_0061 8b99180da1305b37c37f77a59b3ebe04 474 SUPERFAMILY SSF55103 234 472 1.47E-70 T 12-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Alide_0061 8b99180da1305b37c37f77a59b3ebe04 474 Gene3D G3DSA:3.30.465.40 28 247 1.7E-72 T 12-10-2018 Alide_0061 8b99180da1305b37c37f77a59b3ebe04 474 Gene3D G3DSA:3.30.70.2740 349 431 1.3E-10 T 12-10-2018 Alide_0061 8b99180da1305b37c37f77a59b3ebe04 474 Pfam PF02913 FAD linked oxidases, C-terminal domain 231 471 1.9E-65 T 12-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Alide_0061 8b99180da1305b37c37f77a59b3ebe04 474 Pfam PF01565 FAD binding domain 57 194 1.1E-40 T 12-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Alide_0061 8b99180da1305b37c37f77a59b3ebe04 474 Gene3D G3DSA:1.10.45.10 432 472 1.1E-13 T 12-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 Pfam PF03466 LysR substrate binding domain 87 290 1.4E-34 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.0E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.0E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.0E-10 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 Gene3D G3DSA:1.10.10.10 1 90 1.6E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 Gene3D G3DSA:3.40.190.10 91 287 2.3E-31 T 12-10-2018 Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 Gene3D G3DSA:3.40.190.10 162 268 2.3E-31 T 12-10-2018 Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 SUPERFAMILY SSF53850 88 291 2.35E-30 T 12-10-2018 Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 5.3E-22 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0221 dc9c78fb02a12c9306f0d7f688336525 297 SUPERFAMILY SSF46785 1 86 1.92E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0617 e7bdcadf134409db1fac013793742776 308 Gene3D G3DSA:3.60.15.10 8 225 2.9E-35 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_0617 e7bdcadf134409db1fac013793742776 308 SUPERFAMILY SSF56281 18 227 6.16E-40 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_0617 e7bdcadf134409db1fac013793742776 308 Pfam PF00753 Metallo-beta-lactamase superfamily 17 206 1.1E-20 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_0617 e7bdcadf134409db1fac013793742776 308 SMART SM00849 21 206 1.8E-22 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_1167 0700c0ed21dabc9f73c442cb701a0177 313 SUPERFAMILY SSF53850 91 295 9.53E-47 T 12-10-2018 Alide_1167 0700c0ed21dabc9f73c442cb701a0177 313 SUPERFAMILY SSF46785 3 113 4.71E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1167 0700c0ed21dabc9f73c442cb701a0177 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.1E-19 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1167 0700c0ed21dabc9f73c442cb701a0177 313 Gene3D G3DSA:1.10.10.10 1 85 1.4E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1167 0700c0ed21dabc9f73c442cb701a0177 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1167 0700c0ed21dabc9f73c442cb701a0177 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1167 0700c0ed21dabc9f73c442cb701a0177 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.3E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1167 0700c0ed21dabc9f73c442cb701a0177 313 Pfam PF03466 LysR substrate binding domain 90 292 7.9E-49 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1167 0700c0ed21dabc9f73c442cb701a0177 313 Gene3D G3DSA:3.40.190.290 92 298 3.3E-52 T 12-10-2018 Alide_3664 eb277200665cdc19de346740598df9b3 298 Pfam PF00294 pfkB family carbohydrate kinase 36 290 1.7E-40 T 12-10-2018 IPR011611 Carbohydrate kinase PfkB Alide_3664 eb277200665cdc19de346740598df9b3 298 SUPERFAMILY SSF53613 3 290 1.26E-63 T 12-10-2018 IPR029056 Ribokinase-like Alide_3664 eb277200665cdc19de346740598df9b3 298 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 47 71 - T 12-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Alide_3664 eb277200665cdc19de346740598df9b3 298 Gene3D G3DSA:3.40.1190.20 1 296 1.3E-103 T 12-10-2018 IPR029056 Ribokinase-like Alide_4028 2c98499e6ff0ff0f728d406353b90612 254 SUPERFAMILY SSF52833 36 229 8.97E-28 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_4028 2c98499e6ff0ff0f728d406353b90612 254 Pfam PF13462 Thioredoxin 65 208 1.9E-14 T 12-10-2018 IPR012336 Thioredoxin-like fold Alide_4028 2c98499e6ff0ff0f728d406353b90612 254 Gene3D G3DSA:3.40.30.10 64 233 7.0E-32 T 12-10-2018 Alide_1928 750aff04bd6b5eab03634f95f9e0ec16 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 82.469 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Alide_1928 750aff04bd6b5eab03634f95f9e0ec16 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 144 2.1E-55 T 12-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Alide_1928 750aff04bd6b5eab03634f95f9e0ec16 149 Pfam PF03477 ATP cone domain 51 136 7.1E-13 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Alide_4356 7eb84fb0dcdf783bb2c585030d555c23 517 SUPERFAMILY SSF53335 224 478 2.52E-65 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_4356 7eb84fb0dcdf783bb2c585030d555c23 517 Gene3D G3DSA:3.40.50.150 274 510 2.3E-62 T 12-10-2018 Alide_4356 7eb84fb0dcdf783bb2c585030d555c23 517 Pfam PF01564 Spermine/spermidine synthase domain 279 455 3.4E-32 T 12-10-2018 Alide_4356 7eb84fb0dcdf783bb2c585030d555c23 517 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 299 312 - T 12-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Alide_4356 7eb84fb0dcdf783bb2c585030d555c23 517 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 196 490 24.209 T 12-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Alide_2993 f4f10ae6195e5b6e86f3ad164b9efe34 279 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 152 177 - T 12-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 Alide_2993 f4f10ae6195e5b6e86f3ad164b9efe34 279 SUPERFAMILY SSF48576 4 276 6.24E-87 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily Alide_2993 f4f10ae6195e5b6e86f3ad164b9efe34 279 TIGRFAM TIGR03465 HpnD: squalene synthase HpnD 10 275 6.3E-119 T 12-10-2018 IPR017828 Squalene synthase HpnD-like GO:0016117|GO:0016767 Alide_2993 f4f10ae6195e5b6e86f3ad164b9efe34 279 Pfam PF00494 Squalene/phytoene synthase 13 264 5.6E-79 T 12-10-2018 Alide_2993 f4f10ae6195e5b6e86f3ad164b9efe34 279 Gene3D G3DSA:1.10.600.10 4 276 5.5E-84 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily Alide_3446 b7fa9bc3f0dc2e0426209bf2754b8723 104 Pfam PF04972 BON domain 36 104 1.6E-20 T 12-10-2018 IPR007055 BON domain Alide_3446 b7fa9bc3f0dc2e0426209bf2754b8723 104 SMART SM00749 41 104 2.2E-6 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria Alide_2328 369e644521cc5a6147a93f9062ae397a 213 SUPERFAMILY SSF46689 4 65 2.82E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2328 369e644521cc5a6147a93f9062ae397a 213 Gene3D G3DSA:1.10.357.10 48 198 1.8E-29 T 12-10-2018 Alide_2328 369e644521cc5a6147a93f9062ae397a 213 Gene3D G3DSA:1.10.10.60 2 47 2.2E-13 T 12-10-2018 Alide_2328 369e644521cc5a6147a93f9062ae397a 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 5 51 1.2E-11 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2328 369e644521cc5a6147a93f9062ae397a 213 SUPERFAMILY SSF48498 73 184 3.34E-13 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_2328 369e644521cc5a6147a93f9062ae397a 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 5 18 1.5E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2328 369e644521cc5a6147a93f9062ae397a 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 49 1.5E-8 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 Gene3D G3DSA:1.10.287.130 197 312 1.4E-16 T 12-10-2018 Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 SMART SM00388 246 311 2.2E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 9.7E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 9.7E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 440 9.7E-9 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 SMART SM00387 355 462 8.3E-27 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 Pfam PF08521 Two-component sensor kinase N-terminal 24 166 4.4E-32 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 SUPERFAMILY SSF55874 300 461 2.1E-34 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 310 1.7E-6 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 Gene3D G3DSA:3.30.565.10 314 462 6.6E-33 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 SUPERFAMILY SSF47384 229 309 1.0E-12 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_2295 b8462cae9d8d8140bcb6b83e24ba8329 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 355 461 6.3E-18 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_3161 7ee8011ab3e548ef2e71240516c4cbb8 220 SUPERFAMILY SSF50182 112 186 4.25E-10 T 12-10-2018 IPR010920 LSM domain superfamily Alide_3161 7ee8011ab3e548ef2e71240516c4cbb8 220 Pfam PF00924 Mechanosensitive ion channel 67 188 1.9E-12 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Alide_2676 8593a15c91e56c4eabfc6f9bf8704300 288 SUPERFAMILY SSF52402 171 288 3.43E-21 T 12-10-2018 Alide_2676 8593a15c91e56c4eabfc6f9bf8704300 288 Pfam PF00582 Universal stress protein family 204 288 2.5E-11 T 12-10-2018 IPR006016 UspA Alide_2676 8593a15c91e56c4eabfc6f9bf8704300 288 Pfam PF00582 Universal stress protein family 7 159 1.4E-6 T 12-10-2018 IPR006016 UspA Alide_2676 8593a15c91e56c4eabfc6f9bf8704300 288 Gene3D G3DSA:3.40.50.12370 6 288 8.4E-54 T 12-10-2018 Alide_2676 8593a15c91e56c4eabfc6f9bf8704300 288 SUPERFAMILY SSF52402 3 160 5.36E-13 T 12-10-2018 Alide_2676 8593a15c91e56c4eabfc6f9bf8704300 288 PRINTS PR01438 Universal stress protein signature 266 288 2.3E-7 T 12-10-2018 IPR006015 Universal stress protein A Alide_2676 8593a15c91e56c4eabfc6f9bf8704300 288 PRINTS PR01438 Universal stress protein signature 248 260 2.3E-7 T 12-10-2018 IPR006015 Universal stress protein A Alide_2676 8593a15c91e56c4eabfc6f9bf8704300 288 PRINTS PR01438 Universal stress protein signature 168 186 2.3E-7 T 12-10-2018 IPR006015 Universal stress protein A Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 1.2E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.2E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 1.2E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 1.2E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 1.2E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 1.2E-35 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 131 2.4E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 2.4E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 70 81 2.4E-6 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 SUPERFAMILY SSF51735 8 233 6.76E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 Gene3D G3DSA:3.40.50.720 4 233 1.5E-56 T 12-10-2018 Alide_3455 6035fed6fa9d341419f7b3b7c7691043 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 230 7.0E-38 T 12-10-2018 Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 SUPERFAMILY SSF51735 13 268 3.1E-73 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 1.3E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 1.3E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 1.3E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 Gene3D G3DSA:3.40.50.720 3 270 8.3E-81 T 12-10-2018 Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 25 266 2.3E-61 T 12-10-2018 Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 3.5E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 230 250 3.5E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 3.5E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 157 3.5E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 3.5E-28 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_1296 bc4982029b91282eb2d7f44ef70cc4c3 271 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 155 183 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_1540 1a9ca51b4698cfe45df7a350aa76680a 287 Pfam PF03641 Possible lysine decarboxylase 151 279 1.0E-34 T 12-10-2018 IPR031100 LOG family Alide_1540 1a9ca51b4698cfe45df7a350aa76680a 287 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 141 279 1.9E-31 T 12-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG Alide_1540 1a9ca51b4698cfe45df7a350aa76680a 287 SUPERFAMILY SSF102405 41 282 4.43E-53 T 12-10-2018 Alide_1540 1a9ca51b4698cfe45df7a350aa76680a 287 Gene3D G3DSA:3.40.50.450 49 284 1.9E-59 T 12-10-2018 Alide_2591 4621cd10096a41cb983bb82bda57c5aa 447 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 39 216 6.8E-56 T 12-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 Alide_2591 4621cd10096a41cb983bb82bda57c5aa 447 SUPERFAMILY SSF53756 317 437 1.51E-6 T 12-10-2018 Alide_2591 4621cd10096a41cb983bb82bda57c5aa 447 Gene3D G3DSA:3.40.50.11720 45 215 5.6E-41 T 12-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 Alide_2591 4621cd10096a41cb983bb82bda57c5aa 447 Gene3D G3DSA:3.40.50.2000 220 421 5.3E-59 T 12-10-2018 Alide_0888 a5bde790a4b12b8b03deb9048582aedf 943 Gene3D G3DSA:3.20.20.70 46 292 7.2E-27 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_0888 a5bde790a4b12b8b03deb9048582aedf 943 Gene3D G3DSA:3.20.20.370 524 796 6.2E-8 T 12-10-2018 Alide_0888 a5bde790a4b12b8b03deb9048582aedf 943 SUPERFAMILY SSF88713 515 772 1.78E-7 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Alide_0888 a5bde790a4b12b8b03deb9048582aedf 943 Pfam PF03537 Glycoside-hydrolase family GH114 45 274 1.7E-25 T 12-10-2018 IPR004352 Glycoside-hydrolase family GH114, TIM-barrel domain Alide_0888 a5bde790a4b12b8b03deb9048582aedf 943 PIRSF PIRSF029570 4 941 0.0 T 12-10-2018 IPR016925 Uncharacterised conserved protein UCP029570 Alide_0888 a5bde790a4b12b8b03deb9048582aedf 943 SUPERFAMILY SSF51445 34 288 4.0E-41 T 12-10-2018 IPR017853 Glycoside hydrolase superfamily Alide_4283 06be7bc681343673d4b7fc7eb7f371e7 655 Pfam PF08376 Nitrate and nitrite sensing 63 298 5.0E-15 T 12-10-2018 IPR013587 Nitrate/nitrite sensing protein Alide_4283 06be7bc681343673d4b7fc7eb7f371e7 655 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 449 604 2.6E-46 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_4283 06be7bc681343673d4b7fc7eb7f371e7 655 Gene3D G3DSA:1.10.287.950 336 639 5.5E-83 T 12-10-2018 Alide_4283 06be7bc681343673d4b7fc7eb7f371e7 655 Pfam PF00672 HAMP domain 337 384 1.2E-7 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4283 06be7bc681343673d4b7fc7eb7f371e7 655 SMART SM00283 390 637 1.2E-78 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_4283 06be7bc681343673d4b7fc7eb7f371e7 655 SMART SM00304 337 389 2.0E-6 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_4283 06be7bc681343673d4b7fc7eb7f371e7 655 SUPERFAMILY SSF58104 358 638 9.16E-67 T 12-10-2018 Alide_2201 c3b5b4b59b852f18b3ec5e1d2cd02d12 447 Gene3D G3DSA:3.40.50.1100 113 238 4.3E-155 T 12-10-2018 Alide_2201 c3b5b4b59b852f18b3ec5e1d2cd02d12 447 SUPERFAMILY SSF53686 72 431 6.17E-48 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_2201 c3b5b4b59b852f18b3ec5e1d2cd02d12 447 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 447 194.388 T 12-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 Alide_2201 c3b5b4b59b852f18b3ec5e1d2cd02d12 447 Gene3D G3DSA:3.40.50.1100 22 439 4.3E-155 T 12-10-2018 Alide_2201 c3b5b4b59b852f18b3ec5e1d2cd02d12 447 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 74 394 1.7E-46 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_2201 c3b5b4b59b852f18b3ec5e1d2cd02d12 447 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 10 439 6.8E-140 T 12-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 2.8E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.8E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.8E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.8E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.8E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 2.8E-30 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 SUPERFAMILY SSF51735 1 254 4.03E-59 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 2.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.8E-11 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 Gene3D G3DSA:3.40.50.720 1 256 8.1E-60 T 12-10-2018 Alide_2649 7dbe0f6e0d478b6df6d754416e94cdd8 257 Pfam PF00106 short chain dehydrogenase 8 188 1.1E-45 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 Gene3D G3DSA:3.30.450.40 5 202 1.6E-33 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 SMART SM00065 27 203 7.3E-17 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 SUPERFAMILY SSF55781 11 207 1.96E-24 T 12-10-2018 Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 Pfam PF13487 HD domain 401 466 2.6E-22 T 12-10-2018 Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 SUPERFAMILY SSF109604 389 513 1.98E-10 T 12-10-2018 Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 SMART SM00471 220 484 9.6E-4 T 12-10-2018 IPR003607 HD/PDEase domain Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 Gene3D G3DSA:1.10.3210.10 386 523 1.8E-28 T 12-10-2018 Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 Gene3D G3DSA:1.10.3210.10 203 314 1.6E-18 T 12-10-2018 Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 Pfam PF01966 HD domain 226 288 1.4E-4 T 12-10-2018 IPR006674 HD domain Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 SUPERFAMILY SSF109604 216 295 7.85E-8 T 12-10-2018 Alide_2444 1853925c97935e3e2a30d0e1baefb74c 541 Pfam PF01590 GAF domain 27 193 6.1E-14 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_2058 9c3b8bcfb0f0da7f3b45e6ab1b12a761 102 Gene3D G3DSA:1.10.10.10 2 80 6.4E-10 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2058 9c3b8bcfb0f0da7f3b45e6ab1b12a761 102 SUPERFAMILY SSF46785 10 80 1.53E-7 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0664 5f9958964fec1b3c6a0c0abd02be9db9 325 Pfam PF00535 Glycosyl transferase family 2 7 182 3.6E-18 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Alide_0664 5f9958964fec1b3c6a0c0abd02be9db9 325 Gene3D G3DSA:3.90.550.10 1 223 1.4E-35 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0664 5f9958964fec1b3c6a0c0abd02be9db9 325 SUPERFAMILY SSF53448 1 226 3.75E-40 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3170 700f73770fd11a9d65dd48515a5fa7d1 255 Gene3D G3DSA:3.20.20.70 1 252 4.2E-92 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3170 700f73770fd11a9d65dd48515a5fa7d1 255 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 251 89.224 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Alide_3170 700f73770fd11a9d65dd48515a5fa7d1 255 SUPERFAMILY SSF63892 7 248 7.19E-84 T 12-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Alide_3170 700f73770fd11a9d65dd48515a5fa7d1 255 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 9 246 7.6E-68 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Alide_3170 700f73770fd11a9d65dd48515a5fa7d1 255 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 9 246 1.1E-89 T 12-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 Alide_1506 09cd0298f0b1418b676f65605bcff067 447 Gene3D G3DSA:3.90.1260.10 74 367 2.0E-117 T 12-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Alide_1506 09cd0298f0b1418b676f65605bcff067 447 Pfam PF00764 Arginosuccinate synthase 16 394 6.9E-58 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Alide_1506 09cd0298f0b1418b676f65605bcff067 447 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Alide_1506 09cd0298f0b1418b676f65605bcff067 447 TIGRFAM TIGR00032 argG: argininosuccinate synthase 13 419 2.4E-158 T 12-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Alide_1506 09cd0298f0b1418b676f65605bcff067 447 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 446 69.846 T 12-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Alide_1506 09cd0298f0b1418b676f65605bcff067 447 SUPERFAMILY SSF69864 190 442 5.23E-77 T 12-10-2018 Alide_1506 09cd0298f0b1418b676f65605bcff067 447 Gene3D G3DSA:3.40.50.620 14 191 2.0E-117 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1506 09cd0298f0b1418b676f65605bcff067 447 Gene3D G3DSA:1.10.287.400 377 441 1.3E-30 T 12-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Alide_1506 09cd0298f0b1418b676f65605bcff067 447 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 12-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Alide_1506 09cd0298f0b1418b676f65605bcff067 447 SUPERFAMILY SSF52402 6 184 1.13E-29 T 12-10-2018 Alide_3198 5c45d6c0a9e7d767532b31ce19e93db2 284 Gene3D G3DSA:2.60.120.620 90 279 4.7E-58 T 12-10-2018 Alide_3198 5c45d6c0a9e7d767532b31ce19e93db2 284 SMART SM00702 97 279 2.1E-44 T 12-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 Alide_3198 5c45d6c0a9e7d767532b31ce19e93db2 284 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 177 279 8.9E-18 T 12-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Alide_2261 a60a5604355a3518380f7aa981be2d86 569 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 49 567 7.6E-215 T 12-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 Alide_2261 a60a5604355a3518380f7aa981be2d86 569 SUPERFAMILY SSF53474 219 503 1.13E-42 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2261 a60a5604355a3518380f7aa981be2d86 569 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 81 246 1.8E-66 T 12-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 Alide_2261 a60a5604355a3518380f7aa981be2d86 569 Gene3D G3DSA:3.40.50.1820 236 495 2.2E-11 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 PRINTS PR00340 P-II protein signature 52 75 2.0E-43 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 PRINTS PR00340 P-II protein signature 23 41 2.0E-43 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 PRINTS PR00340 P-II protein signature 2 17 2.0E-43 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 PRINTS PR00340 P-II protein signature 83 103 2.0E-43 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 12-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 Gene3D G3DSA:3.30.70.120 1 112 7.5E-46 T 12-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 PIRSF PIRSF039144 1 112 4.8E-54 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 SUPERFAMILY SSF54913 1 112 1.24E-45 T 12-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 12-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 SMART SM00938 4 105 2.7E-66 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_0268 049ae8102b1b0d18b6c2066f0b48be44 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 3.1E-42 T 12-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Alide_1788 63691f77ff383193ca1de3ac8f628973 423 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 14 358 8.0E-15 T 12-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 Alide_1788 63691f77ff383193ca1de3ac8f628973 423 Gene3D G3DSA:1.10.4160.10 2 359 2.8E-29 T 12-10-2018 IPR038271 Purine-cytosine permease superfamily Alide_4391 1c5eef9c8c35404fa4d1e1a7a097476e 376 Pfam PF00561 alpha/beta hydrolase fold 43 355 1.1E-32 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_4391 1c5eef9c8c35404fa4d1e1a7a097476e 376 Gene3D G3DSA:1.10.1740.110 179 286 1.7E-136 T 12-10-2018 Alide_4391 1c5eef9c8c35404fa4d1e1a7a097476e 376 PIRSF PIRSF000443 2 375 1.4E-136 T 12-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 Alide_4391 1c5eef9c8c35404fa4d1e1a7a097476e 376 SUPERFAMILY SSF53474 6 368 2.07E-102 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4391 1c5eef9c8c35404fa4d1e1a7a097476e 376 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 14 366 1.0E-135 T 12-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 Alide_4391 1c5eef9c8c35404fa4d1e1a7a097476e 376 Gene3D G3DSA:3.40.50.1820 18 355 1.7E-136 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4391 1c5eef9c8c35404fa4d1e1a7a097476e 376 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 5 368 29.487 T 12-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 Alide_3707 49fbfb31a7f7984ad2d158b35c265ca3 423 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 49 422 39.199 T 12-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3707 49fbfb31a7f7984ad2d158b35c265ca3 423 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 51 413 1.1E-114 T 12-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_3707 49fbfb31a7f7984ad2d158b35c265ca3 423 Pfam PF01098 Cell cycle protein 53 415 4.4E-100 T 12-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 SUPERFAMILY SSF55874 299 474 1.14E-30 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 416 2.3E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 430 2.3E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 452 2.3E-10 T 12-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 Pfam PF08521 Two-component sensor kinase N-terminal 23 167 5.2E-42 T 12-10-2018 IPR013727 Two-component sensor kinase, N-terminal Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 Pfam PF00512 His Kinase A (phospho-acceptor) domain 245 310 2.2E-15 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 Gene3D G3DSA:1.10.287.130 195 310 3.4E-20 T 12-10-2018 Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 SMART SM00388 244 310 6.3E-16 T 12-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 SMART SM00387 359 478 4.8E-28 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 SUPERFAMILY SSF47384 227 310 2.16E-17 T 12-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 360 472 1.0E-15 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_4212 fb4a34defaeec14e5abe586e7398b3f0 481 Gene3D G3DSA:3.30.565.10 312 478 4.1E-27 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_4343 a07c8ad6a1840be57b53c8ab53926987 269 SUPERFAMILY SSF46785 25 95 3.75E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4343 a07c8ad6a1840be57b53c8ab53926987 269 SUPERFAMILY SSF55781 80 267 1.11E-35 T 12-10-2018 Alide_4343 a07c8ad6a1840be57b53c8ab53926987 269 Pfam PF01614 Bacterial transcriptional regulator 145 263 2.1E-10 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_4343 a07c8ad6a1840be57b53c8ab53926987 269 SMART SM00346 22 112 5.0E-24 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_4343 a07c8ad6a1840be57b53c8ab53926987 269 Gene3D G3DSA:3.30.450.40 95 264 5.4E-33 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_4343 a07c8ad6a1840be57b53c8ab53926987 269 Gene3D G3DSA:1.10.10.10 16 91 9.3E-22 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4343 a07c8ad6a1840be57b53c8ab53926987 269 Pfam PF09339 IclR helix-turn-helix domain 25 74 4.6E-16 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_2158 3e94c2008fe36a0c7bd654d84457dcac 159 Gene3D G3DSA:3.30.70.3460 30 159 3.0E-36 T 12-10-2018 Alide_0701 847f1dd8542c08b77b19818da829a42c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0701 847f1dd8542c08b77b19818da829a42c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0701 847f1dd8542c08b77b19818da829a42c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0701 847f1dd8542c08b77b19818da829a42c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0701 847f1dd8542c08b77b19818da829a42c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.5E-20 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0701 847f1dd8542c08b77b19818da829a42c 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_0701 847f1dd8542c08b77b19818da829a42c 256 SUPERFAMILY SSF51735 1 250 9.82E-56 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0701 847f1dd8542c08b77b19818da829a42c 256 Gene3D G3DSA:3.40.50.720 2 248 3.9E-56 T 12-10-2018 Alide_0701 847f1dd8542c08b77b19818da829a42c 256 Pfam PF00106 short chain dehydrogenase 6 187 3.8E-42 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0384 c4a221cf927c0d7596e9054d72f940ab 267 Pfam PF00005 ABC transporter 28 174 1.1E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0384 c4a221cf927c0d7596e9054d72f940ab 267 Gene3D G3DSA:3.40.50.300 5 266 2.8E-65 T 12-10-2018 Alide_0384 c4a221cf927c0d7596e9054d72f940ab 267 SUPERFAMILY SSF52540 6 234 3.78E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0384 c4a221cf927c0d7596e9054d72f940ab 267 SMART SM00382 36 222 4.0E-13 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4431 b52336879629ab078a164119cae9fd96 132 ProDom PD031251 TRAK PLASMID ORIT BINDING TRANSFER SYSTEM DNA ORIT-BINDING SEQUENCING DIRECT 1 132 4.0E-50 T 12-10-2018 IPR035225 Protein of unknown function DUF5338 Alide_4431 b52336879629ab078a164119cae9fd96 132 Pfam PF17273 Family of unknown function (DUF5338) 7 74 3.5E-29 T 12-10-2018 IPR035225 Protein of unknown function DUF5338 Alide_2964 7f118120d6ef66d624d6215a1835f43a 385 Gene3D G3DSA:3.40.50.10540 8 329 3.3E-115 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2964 7f118120d6ef66d624d6215a1835f43a 385 SUPERFAMILY SSF89796 7 384 8.5E-120 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2964 7f118120d6ef66d624d6215a1835f43a 385 Gene3D G3DSA:3.30.1540.10 223 311 3.3E-115 T 12-10-2018 Alide_2964 7f118120d6ef66d624d6215a1835f43a 385 Pfam PF02515 CoA-transferase family III 9 360 1.3E-85 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_4043 7f9d55844fe496306309dfd77c68eb72 344 Pfam PF13387 Domain of unknown function (DUF4105) 128 280 2.3E-47 T 12-10-2018 IPR025178 Domain of unknown function DUF4105 Alide_3271 8b8b048e8142c593cb69e25e1ee54758 87 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 42 7.0E-13 T 12-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Alide_3271 8b8b048e8142c593cb69e25e1ee54758 87 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 42 2.5E-13 T 12-10-2018 Alide_3271 8b8b048e8142c593cb69e25e1ee54758 87 Gene3D G3DSA:3.40.1620.10 2 44 6.0E-19 T 12-10-2018 Alide_3271 8b8b048e8142c593cb69e25e1ee54758 87 SUPERFAMILY SSF143120 4 42 3.53E-10 T 12-10-2018 IPR036165 YefM-like superfamily Alide_2586 96f1a1bafc0879f59e6a357904a3f494 328 Gene3D G3DSA:3.40.190.170 29 326 2.8E-66 T 12-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Alide_2586 96f1a1bafc0879f59e6a357904a3f494 328 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 36 311 1.0E-53 T 12-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Alide_1513 bbb6a52efdef08fd1300408bd1edad5e 502 Gene3D G3DSA:3.60.20.10 2 464 1.0E-147 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_1513 bbb6a52efdef08fd1300408bd1edad5e 502 SUPERFAMILY SSF53271 249 475 1.23E-70 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_1513 bbb6a52efdef08fd1300408bd1edad5e 502 Pfam PF00156 Phosphoribosyl transferase domain 277 392 1.0E-8 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Alide_1513 bbb6a52efdef08fd1300408bd1edad5e 502 SUPERFAMILY SSF56235 2 256 4.8E-66 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_1513 bbb6a52efdef08fd1300408bd1edad5e 502 PIRSF PIRSF000485 1 479 1.2E-155 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Alide_1513 bbb6a52efdef08fd1300408bd1edad5e 502 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 463 44.758 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Alide_1513 bbb6a52efdef08fd1300408bd1edad5e 502 Gene3D G3DSA:3.40.50.2020 274 443 1.0E-147 T 12-10-2018 Alide_1513 bbb6a52efdef08fd1300408bd1edad5e 502 Pfam PF13537 Glutamine amidotransferase domain 82 212 4.7E-19 T 12-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Alide_1513 bbb6a52efdef08fd1300408bd1edad5e 502 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 463 2.2E-157 T 12-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Alide_0978 064dbb8e6d32c94f423c259cbbdea43b 320 Gene3D G3DSA:1.10.3720.10 84 312 2.0E-25 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0978 064dbb8e6d32c94f423c259cbbdea43b 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 316 9.2E-40 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0978 064dbb8e6d32c94f423c259cbbdea43b 320 SUPERFAMILY SSF161098 90 302 5.4E-20 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1993 580c77dae530891be34d015893b007ef 210 SUPERFAMILY SSF81452 15 208 1.44E-58 T 12-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1993 580c77dae530891be34d015893b007ef 210 Pfam PF00510 Cytochrome c oxidase subunit III 15 208 5.3E-19 T 12-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_1993 580c77dae530891be34d015893b007ef 210 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 32 210 6.1E-81 T 12-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 Alide_1993 580c77dae530891be34d015893b007ef 210 Gene3D G3DSA:1.20.120.80 27 210 1.7E-57 T 12-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0773 c33cf6743da82d8bcee1562642b61927 89 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 4 72 9.3E-30 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Alide_0773 c33cf6743da82d8bcee1562642b61927 89 Pfam PF01176 Translation initiation factor 1A / IF-1 8 71 4.3E-22 T 12-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 Alide_0773 c33cf6743da82d8bcee1562642b61927 89 Gene3D G3DSA:2.40.50.140 1 72 2.4E-30 T 12-10-2018 Alide_0773 c33cf6743da82d8bcee1562642b61927 89 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 2 76 25.088 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Alide_0773 c33cf6743da82d8bcee1562642b61927 89 SUPERFAMILY SSF50249 4 72 2.8E-23 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0756 bebcd65d2e654214d53f1e60e5c24950 315 Gene3D G3DSA:3.90.550.10 1 260 1.4E-61 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0756 bebcd65d2e654214d53f1e60e5c24950 315 Pfam PF00535 Glycosyl transferase family 2 7 115 5.3E-28 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Alide_0756 bebcd65d2e654214d53f1e60e5c24950 315 SUPERFAMILY SSF53448 5 228 5.06E-56 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3334 8fba8fbc7fa86ee192e02089071b7b14 340 Gene3D G3DSA:3.40.190.10 141 265 2.1E-107 T 12-10-2018 Alide_3334 8fba8fbc7fa86ee192e02089071b7b14 340 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 64 335 5.7E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3334 8fba8fbc7fa86ee192e02089071b7b14 340 SUPERFAMILY SSF53850 104 302 1.78E-13 T 12-10-2018 Alide_3334 8fba8fbc7fa86ee192e02089071b7b14 340 Gene3D G3DSA:3.40.190.150 44 330 2.1E-107 T 12-10-2018 Alide_3334 8fba8fbc7fa86ee192e02089071b7b14 340 PIRSF PIRSF017082 8 340 4.1E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1930 b0313ee1603a7600c622668f86d03925 270 Gene3D G3DSA:1.10.530.10 100 233 5.6E-20 T 12-10-2018 Alide_1930 b0313ee1603a7600c622668f86d03925 270 Pfam PF01464 Transglycosylase SLT domain 124 202 2.0E-16 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_1930 b0313ee1603a7600c622668f86d03925 270 SUPERFAMILY SSF53955 119 236 2.75E-23 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 15 22 - T 12-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 Pfam PF00709 Adenylosuccinate synthetase 9 449 7.7E-168 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 SUPERFAMILY SSF52540 8 455 1.03E-161 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 Gene3D G3DSA:3.40.440.10 10 280 4.2E-96 T 12-10-2018 Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 140 151 - T 12-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 SMART SM00788 8 450 1.8E-280 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 458 201.505 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 Gene3D G3DSA:3.90.170.10 289 457 4.2E-63 T 12-10-2018 Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 10 455 5.4E-161 T 12-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Alide_3026 2848531c8c60dc77b97c59f3788843fa 458 Gene3D G3DSA:1.10.300.10 106 223 4.2E-96 T 12-10-2018 Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 86 1.2E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 SUPERFAMILY SSF46785 18 90 1.48E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 SUPERFAMILY SSF64288 74 260 3.71E-26 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 3.2E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 3.2E-9 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 Gene3D G3DSA:1.10.10.10 15 93 1.4E-24 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 Gene3D G3DSA:3.40.1410.10 98 261 7.0E-23 T 12-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 Pfam PF07702 UTRA domain 118 252 8.8E-17 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 SMART SM00866 107 253 2.2E-13 T 12-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Alide_3393 579af2cddce0743e5f2fbb9f6c84eba7 271 SMART SM00345 27 86 1.7E-20 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_2694 9da3ab8c3d99b557ef83a658b22a2937 243 Gene3D G3DSA:3.40.50.360 9 243 5.2E-76 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_2694 9da3ab8c3d99b557ef83a658b22a2937 243 SUPERFAMILY SSF52218 7 232 5.66E-65 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_2694 9da3ab8c3d99b557ef83a658b22a2937 243 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 11 229 4.3E-126 T 12-10-2018 IPR014063 Arsenate resistance ArsH Alide_2694 9da3ab8c3d99b557ef83a658b22a2937 243 Pfam PF03358 NADPH-dependent FMN reductase 38 180 1.3E-26 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Alide_1405 09d17f4210f6df3abda164a7d0cff303 326 Pfam PF00535 Glycosyl transferase family 2 17 178 2.9E-31 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Alide_1405 09d17f4210f6df3abda164a7d0cff303 326 SUPERFAMILY SSF53448 12 255 2.49E-41 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_1405 09d17f4210f6df3abda164a7d0cff303 326 Gene3D G3DSA:3.90.550.10 2 233 1.0E-37 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3944 2fe15f01e93ee625bb78e372dc55c318 647 SUPERFAMILY SSF103473 13 442 7.19E-30 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_3944 2fe15f01e93ee625bb78e372dc55c318 647 Gene3D G3DSA:1.20.1250.20 25 438 1.2E-26 T 12-10-2018 Alide_3944 2fe15f01e93ee625bb78e372dc55c318 647 Pfam PF07690 Major Facilitator Superfamily 35 329 3.7E-13 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_3944 2fe15f01e93ee625bb78e372dc55c318 647 SUPERFAMILY SSF69593 418 629 1.11E-37 T 12-10-2018 Alide_3944 2fe15f01e93ee625bb78e372dc55c318 647 Pfam PF01553 Acyltransferase 458 589 2.1E-26 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Alide_3944 2fe15f01e93ee625bb78e372dc55c318 647 SMART SM00563 472 593 9.9E-35 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Alide_3046 be57447155fdb15d972d854321952522 257 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 50 254 4.2E-50 T 12-10-2018 Alide_3046 be57447155fdb15d972d854321952522 257 Gene3D G3DSA:3.40.50.150 41 256 3.3E-66 T 12-10-2018 Alide_3046 be57447155fdb15d972d854321952522 257 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 50 255 2.8E-53 T 12-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Alide_3046 be57447155fdb15d972d854321952522 257 SUPERFAMILY SSF53335 47 255 1.48E-35 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_3930 8da1320964016fde1045524f0c58f937 587 Gene3D G3DSA:3.30.9.50 73 298 6.5E-103 T 12-10-2018 Alide_3930 8da1320964016fde1045524f0c58f937 587 Gene3D G3DSA:3.40.30.120 424 581 5.4E-53 T 12-10-2018 Alide_3930 8da1320964016fde1045524f0c58f937 587 SUPERFAMILY SSF51905 6 379 5.03E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3930 8da1320964016fde1045524f0c58f937 587 Pfam PF01494 FAD binding domain 5 367 1.2E-106 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 Alide_3930 8da1320964016fde1045524f0c58f937 587 Gene3D G3DSA:3.50.50.60 7 360 6.5E-103 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3930 8da1320964016fde1045524f0c58f937 587 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 169 184 2.2E-42 T 12-10-2018 Alide_3930 8da1320964016fde1045524f0c58f937 587 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.2E-42 T 12-10-2018 Alide_3930 8da1320964016fde1045524f0c58f937 587 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 316 2.2E-42 T 12-10-2018 Alide_3930 8da1320964016fde1045524f0c58f937 587 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 316 332 2.2E-42 T 12-10-2018 Alide_3930 8da1320964016fde1045524f0c58f937 587 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 352 368 2.2E-42 T 12-10-2018 Alide_3930 8da1320964016fde1045524f0c58f937 587 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 334 352 2.2E-42 T 12-10-2018 Alide_1607 2c04caaf431eb41099dcc5f12a6c2394 321 SUPERFAMILY SSF53850 98 284 5.02E-13 T 12-10-2018 Alide_1607 2c04caaf431eb41099dcc5f12a6c2394 321 Gene3D G3DSA:3.40.190.10 123 246 2.2E-107 T 12-10-2018 Alide_1607 2c04caaf431eb41099dcc5f12a6c2394 321 Gene3D G3DSA:3.40.190.150 28 311 2.2E-107 T 12-10-2018 Alide_1607 2c04caaf431eb41099dcc5f12a6c2394 321 PIRSF PIRSF017082 5 320 4.4E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1607 2c04caaf431eb41099dcc5f12a6c2394 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 317 3.1E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0128 0bfe6e300759a454cc8e639b50192644 769 Gene3D G3DSA:1.20.210.10 228 756 3.0E-161 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0128 0bfe6e300759a454cc8e639b50192644 769 SUPERFAMILY SSF81442 282 757 1.7E-75 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0128 0bfe6e300759a454cc8e639b50192644 769 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 288 733 1.9E-67 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2269 abaec64bcdb19eab171fb45b27d445a8 307 PIRSF PIRSF037167 5 305 5.6E-95 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Alide_2269 abaec64bcdb19eab171fb45b27d445a8 307 SUPERFAMILY SSF53335 18 266 1.15E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2269 abaec64bcdb19eab171fb45b27d445a8 307 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Alide_2269 abaec64bcdb19eab171fb45b27d445a8 307 Gene3D G3DSA:3.40.50.150 104 300 6.9E-42 T 12-10-2018 Alide_2269 abaec64bcdb19eab171fb45b27d445a8 307 Pfam PF05175 Methyltransferase small domain 133 216 3.6E-16 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Alide_2269 abaec64bcdb19eab171fb45b27d445a8 307 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 34 296 4.3E-52 T 12-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Alide_2269 abaec64bcdb19eab171fb45b27d445a8 307 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 9 295 7.5E-95 T 12-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 Alide_2823 337528ff73ef0321cc6260a096b56491 187 Pfam PF14803 Nudix N-terminal 6 39 2.0E-9 T 12-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 Alide_2823 337528ff73ef0321cc6260a096b56491 187 SUPERFAMILY SSF55811 6 162 1.0E-29 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_2823 337528ff73ef0321cc6260a096b56491 187 ProSitePatterns PS00893 Nudix box signature. 75 96 - T 12-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Alide_2823 337528ff73ef0321cc6260a096b56491 187 Pfam PF00293 NUDIX domain 46 145 9.5E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Alide_2823 337528ff73ef0321cc6260a096b56491 187 Gene3D G3DSA:3.90.79.10 44 162 1.6E-21 T 12-10-2018 Alide_3006 a0773405630654ae492f9d563452629e 128 Pfam PF01609 Transposase DDE domain 4 121 9.9E-20 T 12-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Alide_3355 4b7cc53a7fc6bd3e8bfccd26578c0f9d 550 Pfam PF04773 FecR protein 112 211 2.0E-14 T 12-10-2018 IPR006860 FecR protein Alide_3355 4b7cc53a7fc6bd3e8bfccd26578c0f9d 550 SMART SM00257 22 69 9.0E-4 T 12-10-2018 IPR018392 LysM domain Alide_3355 4b7cc53a7fc6bd3e8bfccd26578c0f9d 550 Gene3D G3DSA:3.10.350.10 12 73 3.6E-7 T 12-10-2018 IPR036779 LysM domain superfamily Alide_3355 4b7cc53a7fc6bd3e8bfccd26578c0f9d 550 Gene3D G3DSA:2.60.120.1440 110 242 1.3E-6 T 12-10-2018 Alide_3355 4b7cc53a7fc6bd3e8bfccd26578c0f9d 550 PIRSF PIRSF029644 1 527 2.2E-110 T 12-10-2018 IPR016930 Uncharacterised conserved protein UCP029644, LysM, PA4035 Alide_3355 4b7cc53a7fc6bd3e8bfccd26578c0f9d 550 Pfam PF01476 LysM domain 23 69 2.4E-6 T 12-10-2018 IPR018392 LysM domain Alide_3355 4b7cc53a7fc6bd3e8bfccd26578c0f9d 550 Gene3D G3DSA:2.60.40.10 328 443 8.9E-13 T 12-10-2018 IPR013783 Immunoglobulin-like fold Alide_3355 4b7cc53a7fc6bd3e8bfccd26578c0f9d 550 Gene3D G3DSA:2.60.40.10 444 535 2.7E-8 T 12-10-2018 IPR013783 Immunoglobulin-like fold Alide_4363 ae734f87b2425641517250c9bbca8f87 451 Gene3D G3DSA:3.90.1150.10 36 442 3.6E-142 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_4363 ae734f87b2425641517250c9bbca8f87 451 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 259 296 - T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_4363 ae734f87b2425641517250c9bbca8f87 451 PIRSF PIRSF000521 40 156 4.6E-6 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_4363 ae734f87b2425641517250c9bbca8f87 451 PIRSF PIRSF000521 181 450 1.0E-16 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_4363 ae734f87b2425641517250c9bbca8f87 451 Gene3D G3DSA:3.40.640.10 72 353 3.6E-142 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_4363 ae734f87b2425641517250c9bbca8f87 451 SUPERFAMILY SSF53383 31 449 1.86E-114 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_4363 ae734f87b2425641517250c9bbca8f87 451 Pfam PF00202 Aminotransferase class-III 38 447 3.4E-84 T 12-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Alide_4312 c097f1bb93359e48f1f3836671c9879b 70 Pfam PF00364 Biotin-requiring enzyme 4 69 7.9E-15 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_4312 c097f1bb93359e48f1f3836671c9879b 70 SUPERFAMILY SSF51230 2 69 3.8E-17 T 12-10-2018 IPR011053 Single hybrid motif Alide_4312 c097f1bb93359e48f1f3836671c9879b 70 Gene3D G3DSA:2.40.50.100 1 70 1.2E-18 T 12-10-2018 Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 Gene3D G3DSA:2.30.330.10 243 325 4.0E-5 T 12-10-2018 IPR036429 SpoA-like superfamily Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 252 319 3.5E-18 T 12-10-2018 IPR001543 Surface presentation of antigen (SpoA) Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 SUPERFAMILY SSF101801 249 322 5.36E-13 T 12-10-2018 IPR036429 SpoA-like superfamily Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 Gene3D G3DSA:3.40.1550.10 44 231 4.9E-55 T 12-10-2018 IPR028976 CheC-like superfamily Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 5 318 4.2E-100 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 Pfam PF02154 Flagellar motor switch protein FliM 38 230 7.6E-67 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 9.0E-24 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 9.0E-24 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 9.0E-24 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 9.0E-24 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 PIRSF PIRSF002888 2 327 1.7E-90 T 12-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Alide_3850 c1cb076e2a8606987b6198650fa0f719 334 SUPERFAMILY SSF103039 5 230 1.12E-20 T 12-10-2018 IPR028976 CheC-like superfamily Alide_0291 f66933642d426a30c73ad264c0b3e13a 339 Gene3D G3DSA:1.10.760.10 48 195 6.4E-116 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0291 f66933642d426a30c73ad264c0b3e13a 339 SUPERFAMILY SSF46626 182 330 4.31E-43 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0291 f66933642d426a30c73ad264c0b3e13a 339 Gene3D G3DSA:1.10.760.10 46 319 6.4E-116 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0291 f66933642d426a30c73ad264c0b3e13a 339 Pfam PF03150 Di-haem cytochrome c peroxidase 48 195 1.5E-51 T 12-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 Alide_0291 f66933642d426a30c73ad264c0b3e13a 339 Pfam PF00034 Cytochrome c 204 313 6.5E-10 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0291 f66933642d426a30c73ad264c0b3e13a 339 SUPERFAMILY SSF46626 28 183 4.47E-50 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0291 f66933642d426a30c73ad264c0b3e13a 339 PIRSF PIRSF000294 7 337 7.8E-133 T 12-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 Alide_1978 efc6d9fa367f429c92e543c317152888 346 Gene3D G3DSA:3.40.50.720 169 318 9.4E-44 T 12-10-2018 Alide_1978 efc6d9fa367f429c92e543c317152888 346 Pfam PF02625 XdhC and CoxI family 15 69 4.0E-21 T 12-10-2018 IPR003777 XdhC- CoxI Alide_1978 efc6d9fa367f429c92e543c317152888 346 Pfam PF13478 XdhC Rossmann domain 170 312 1.1E-36 T 12-10-2018 IPR027051 XdhC Rossmann domain Alide_0830 21b32630b0b39d77a234b147bbc59e82 212 Pfam PF00034 Cytochrome c 39 114 3.9E-8 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0830 21b32630b0b39d77a234b147bbc59e82 212 Pfam PF00034 Cytochrome c 143 210 8.3E-9 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0830 21b32630b0b39d77a234b147bbc59e82 212 PIRSF PIRSF000005 1 212 5.7E-63 T 12-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 Alide_0830 21b32630b0b39d77a234b147bbc59e82 212 SUPERFAMILY SSF46626 123 210 1.43E-22 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0830 21b32630b0b39d77a234b147bbc59e82 212 PRINTS PR00605 Class IC cytochrome C signature 186 208 8.4E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Alide_0830 21b32630b0b39d77a234b147bbc59e82 212 PRINTS PR00605 Class IC cytochrome C signature 46 57 8.4E-5 T 12-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 Alide_0830 21b32630b0b39d77a234b147bbc59e82 212 Gene3D G3DSA:1.10.760.10 119 212 9.0E-28 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0830 21b32630b0b39d77a234b147bbc59e82 212 SUPERFAMILY SSF46626 39 126 1.8E-22 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_0830 21b32630b0b39d77a234b147bbc59e82 212 Gene3D G3DSA:1.10.760.10 39 114 1.4E-24 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_4311 c5aef426c237685f217d745d1e826ac4 455 SUPERFAMILY SSF52440 5 119 1.94E-44 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_4311 c5aef426c237685f217d745d1e826ac4 455 SUPERFAMILY SSF56059 89 353 1.03E-60 T 12-10-2018 Alide_4311 c5aef426c237685f217d745d1e826ac4 455 Pfam PF00289 Biotin carboxylase, N-terminal domain 8 115 1.4E-41 T 12-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_4311 c5aef426c237685f217d745d1e826ac4 455 Pfam PF02785 Biotin carboxylase C-terminal domain 342 445 6.6E-35 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_4311 c5aef426c237685f217d745d1e826ac4 455 SUPERFAMILY SSF51246 337 449 9.42E-37 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_4311 c5aef426c237685f217d745d1e826ac4 455 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 158 172 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_4311 c5aef426c237685f217d745d1e826ac4 455 Gene3D G3DSA:3.30.470.130 1 453 5.3E-166 T 12-10-2018 Alide_4311 c5aef426c237685f217d745d1e826ac4 455 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 122 327 3.7E-57 T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_4311 c5aef426c237685f217d745d1e826ac4 455 SMART SM00878 342 447 2.1E-49 T 12-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Alide_4311 c5aef426c237685f217d745d1e826ac4 455 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 291 298 - T 12-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Alide_4211 e94e0bff671c783769aba191751863b2 342 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 64 339 9.0E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4211 e94e0bff671c783769aba191751863b2 342 Gene3D G3DSA:3.40.190.150 45 333 1.9E-100 T 12-10-2018 Alide_4211 e94e0bff671c783769aba191751863b2 342 SUPERFAMILY SSF53850 127 307 2.17E-11 T 12-10-2018 Alide_4211 e94e0bff671c783769aba191751863b2 342 PIRSF PIRSF017082 10 342 1.3E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4211 e94e0bff671c783769aba191751863b2 342 Gene3D G3DSA:3.40.190.10 144 268 1.9E-100 T 12-10-2018 Alide_1391 02b4d30ae923f7cd93d92ae28389fc32 104 Pfam PF12112 Protein of unknown function (DUF3579) 6 95 8.2E-41 T 12-10-2018 IPR021969 Protein of unknown function DUF3579 Alide_1391 02b4d30ae923f7cd93d92ae28389fc32 104 Gene3D G3DSA:3.30.70.2340 2 99 1.0E-36 T 12-10-2018 Alide_0936 9bec0eb6a8b1a3fb0eece5b913711c89 281 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 182 188 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Alide_0936 9bec0eb6a8b1a3fb0eece5b913711c89 281 Gene3D G3DSA:3.40.50.150 87 276 3.8E-57 T 12-10-2018 Alide_0936 9bec0eb6a8b1a3fb0eece5b913711c89 281 SUPERFAMILY SSF53335 20 256 7.0E-57 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0936 9bec0eb6a8b1a3fb0eece5b913711c89 281 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 4 271 1.8E-69 T 12-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Alide_0936 9bec0eb6a8b1a3fb0eece5b913711c89 281 Gene3D G3DSA:1.10.8.10 4 86 2.4E-22 T 12-10-2018 Alide_0936 9bec0eb6a8b1a3fb0eece5b913711c89 281 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 1 275 44.483 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Alide_0936 9bec0eb6a8b1a3fb0eece5b913711c89 281 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 271 2.7E-86 T 12-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Alide_0936 9bec0eb6a8b1a3fb0eece5b913711c89 281 Pfam PF05175 Methyltransferase small domain 112 192 2.4E-16 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Alide_4022 05bdbd02df48c39a3578f46acf5baa0c 136 TIGRFAM TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family 14 129 4.4E-43 T 12-10-2018 IPR021877 Protein of unknown function DUF3487 Alide_4022 05bdbd02df48c39a3578f46acf5baa0c 136 Pfam PF11990 Protein of unknown function (DUF3487) 12 130 7.6E-42 T 12-10-2018 IPR021877 Protein of unknown function DUF3487 Alide_2413 b7befb69048be1dbfbd750c917137a47 139 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 19 54 4.3E-12 T 12-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Alide_2413 b7befb69048be1dbfbd750c917137a47 139 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 56 121 4.4E-17 T 12-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Alide_2413 b7befb69048be1dbfbd750c917137a47 139 SUPERFAMILY SSF50249 5 125 9.77E-35 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_0407 36b115ba663229a1eb69800c7d6b7f71 157 Pfam PF00177 Ribosomal protein S7p/S5e 1 150 3.5E-64 T 12-10-2018 IPR023798 Ribosomal protein S7 domain Alide_0407 36b115ba663229a1eb69800c7d6b7f71 157 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 12-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Alide_0407 36b115ba663229a1eb69800c7d6b7f71 157 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.2E-62 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Alide_0407 36b115ba663229a1eb69800c7d6b7f71 157 PIRSF PIRSF002122 3 157 6.7E-54 T 12-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 Alide_0407 36b115ba663229a1eb69800c7d6b7f71 157 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 157 34.664 T 12-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Alide_0407 36b115ba663229a1eb69800c7d6b7f71 157 Gene3D G3DSA:1.10.455.10 2 156 3.0E-58 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Alide_0407 36b115ba663229a1eb69800c7d6b7f71 157 SUPERFAMILY SSF47973 2 150 1.57E-57 T 12-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Alide_0488 6612096ea048678c44848cfccd61a631 200 Pfam PF13580 SIS domain 15 146 1.8E-27 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Alide_0488 6612096ea048678c44848cfccd61a631 200 SUPERFAMILY SSF53697 2 191 1.25E-37 T 12-10-2018 Alide_0488 6612096ea048678c44848cfccd61a631 200 Gene3D G3DSA:3.40.50.10490 1 199 1.0E-52 T 12-10-2018 Alide_4494 72ff7039721dacb6d4267cdd9139d82f 302 SUPERFAMILY SSF52540 33 228 4.84E-17 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4494 72ff7039721dacb6d4267cdd9139d82f 302 Gene3D G3DSA:3.40.50.300 24 212 9.7E-18 T 12-10-2018 Alide_4494 72ff7039721dacb6d4267cdd9139d82f 302 Pfam PF05621 Bacterial TniB protein 27 278 3.6E-103 T 12-10-2018 IPR008868 Bacterial TniB Alide_2658 68d5b8d9c9f233b9e9a03b45c7ba0a66 184 Pfam PF01202 Shikimate kinase 14 122 1.3E-7 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Alide_2658 68d5b8d9c9f233b9e9a03b45c7ba0a66 184 SUPERFAMILY SSF52540 4 167 1.07E-19 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2658 68d5b8d9c9f233b9e9a03b45c7ba0a66 184 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 8 166 3.3E-46 T 12-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 Alide_2658 68d5b8d9c9f233b9e9a03b45c7ba0a66 184 Gene3D G3DSA:3.40.50.300 2 170 2.5E-52 T 12-10-2018 Alide_4257 687a9aef7a1c5cdf78a834cb948793e7 508 Pfam PF01435 Peptidase family M48 94 260 4.5E-27 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Alide_3990 589974649d765b97c19ce2199bed88e6 266 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 263 5.7E-95 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Alide_3990 589974649d765b97c19ce2199bed88e6 266 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 266 35.616 T 12-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Alide_3990 589974649d765b97c19ce2199bed88e6 266 Gene3D G3DSA:3.20.20.70 1 266 2.2E-104 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3990 589974649d765b97c19ce2199bed88e6 266 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 12-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 Alide_3990 589974649d765b97c19ce2199bed88e6 266 SUPERFAMILY SSF51366 12 265 1.18E-88 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Alide_1569 cfe9c2eee2c6a4e0a888c42c3f3a0dbd 167 Pfam PF03358 NADPH-dependent FMN reductase 49 111 1.0E-6 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Alide_1569 cfe9c2eee2c6a4e0a888c42c3f3a0dbd 167 Gene3D G3DSA:3.40.50.360 4 164 5.2E-26 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_1569 cfe9c2eee2c6a4e0a888c42c3f3a0dbd 167 SUPERFAMILY SSF52218 7 160 3.41E-33 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_0862 a89b4c853fc15478840c805492953fb2 282 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0862 a89b4c853fc15478840c805492953fb2 282 Pfam PF00005 ABC transporter 28 177 1.2E-26 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0862 a89b4c853fc15478840c805492953fb2 282 SMART SM00382 37 226 8.1E-11 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0862 a89b4c853fc15478840c805492953fb2 282 SUPERFAMILY SSF52540 12 240 5.32E-64 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0862 a89b4c853fc15478840c805492953fb2 282 Gene3D G3DSA:3.40.50.300 10 257 2.4E-66 T 12-10-2018 Alide_3048 0f94d430365c872afa1be58d97217c70 526 Pfam PF00990 Diguanylate cyclase, GGDEF domain 366 522 6.1E-39 T 12-10-2018 IPR000160 GGDEF domain Alide_3048 0f94d430365c872afa1be58d97217c70 526 SUPERFAMILY SSF55073 371 524 1.49E-42 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_3048 0f94d430365c872afa1be58d97217c70 526 Gene3D G3DSA:3.30.70.270 360 526 3.2E-50 T 12-10-2018 Alide_3048 0f94d430365c872afa1be58d97217c70 526 SMART SM00267 355 526 8.5E-51 T 12-10-2018 IPR000160 GGDEF domain Alide_3048 0f94d430365c872afa1be58d97217c70 526 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 364 525 4.6E-45 T 12-10-2018 IPR000160 GGDEF domain Alide_2272 962af9e11d9e939705b4a99f4dd64ca1 274 Gene3D G3DSA:2.160.10.10 89 259 3.6E-54 T 12-10-2018 Alide_2272 962af9e11d9e939705b4a99f4dd64ca1 274 SUPERFAMILY SSF51161 4 258 6.52E-73 T 12-10-2018 IPR011004 Trimeric LpxA-like superfamily Alide_2272 962af9e11d9e939705b4a99f4dd64ca1 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 177 211 1.7E-13 T 12-10-2018 IPR001451 Hexapeptide repeat Alide_2272 962af9e11d9e939705b4a99f4dd64ca1 274 Gene3D G3DSA:1.10.166.10 2 72 5.8E-28 T 12-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 Alide_2272 962af9e11d9e939705b4a99f4dd64ca1 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 4 71 2.2E-23 T 12-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 Alide_2272 962af9e11d9e939705b4a99f4dd64ca1 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 2 274 54.964 T 12-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 Alide_2272 962af9e11d9e939705b4a99f4dd64ca1 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 136 164 - T 12-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Alide_2272 962af9e11d9e939705b4a99f4dd64ca1 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 273 1.0E-131 T 12-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 Alide_1115 2696560c657baf6523bbaba1e8bfe4fe 297 SUPERFAMILY SSF48576 25 275 3.78E-82 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily Alide_1115 2696560c657baf6523bbaba1e8bfe4fe 297 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site Alide_1115 2696560c657baf6523bbaba1e8bfe4fe 297 Gene3D G3DSA:1.10.600.10 5 297 4.4E-93 T 12-10-2018 IPR008949 Isoprenoid synthase domain superfamily Alide_1115 2696560c657baf6523bbaba1e8bfe4fe 297 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 84 100 - T 12-10-2018 IPR033749 Polyprenyl synthetase, conserved site Alide_1115 2696560c657baf6523bbaba1e8bfe4fe 297 Pfam PF00348 Polyprenyl synthetase 36 265 9.9E-57 T 12-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 Alide_3668 2804c799638493d231b5cd5f4e47991c 152 Pfam PF00364 Biotin-requiring enzyme 78 151 3.0E-24 T 12-10-2018 IPR000089 Biotin/lipoyl attachment Alide_3668 2804c799638493d231b5cd5f4e47991c 152 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 152 3.5E-55 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Alide_3668 2804c799638493d231b5cd5f4e47991c 152 Gene3D G3DSA:2.40.50.100 74 152 2.7E-32 T 12-10-2018 Alide_3668 2804c799638493d231b5cd5f4e47991c 152 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 81 94 2.2E-18 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Alide_3668 2804c799638493d231b5cd5f4e47991c 152 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 113 126 2.2E-18 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Alide_3668 2804c799638493d231b5cd5f4e47991c 152 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 98 112 2.2E-18 T 12-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 Alide_3668 2804c799638493d231b5cd5f4e47991c 152 SUPERFAMILY SSF51230 77 152 2.88E-25 T 12-10-2018 IPR011053 Single hybrid motif Alide_2891 544bdf016bf8ce8a19dcd734b5ee2803 406 Gene3D G3DSA:3.40.50.2300 150 369 1.1E-102 T 12-10-2018 Alide_2891 544bdf016bf8ce8a19dcd734b5ee2803 406 Gene3D G3DSA:3.40.50.2300 53 361 1.1E-102 T 12-10-2018 Alide_2891 544bdf016bf8ce8a19dcd734b5ee2803 406 Pfam PF13458 Periplasmic binding protein 30 368 2.7E-79 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_2891 544bdf016bf8ce8a19dcd734b5ee2803 406 SUPERFAMILY SSF53822 30 403 4.71E-83 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_4304 e6fdedb42d4c67d78d927b86ba79ba93 478 Gene3D G3DSA:3.90.700.10 236 397 5.3E-84 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_4304 e6fdedb42d4c67d78d927b86ba79ba93 478 SUPERFAMILY SSF51905 3 460 1.06E-33 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4304 e6fdedb42d4c67d78d927b86ba79ba93 478 Pfam PF00890 FAD binding domain 3 432 2.3E-31 T 12-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_4304 e6fdedb42d4c67d78d927b86ba79ba93 478 Gene3D G3DSA:3.50.50.60 3 455 5.3E-84 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_4304 e6fdedb42d4c67d78d927b86ba79ba93 478 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 2 460 1.6E-216 T 12-10-2018 IPR012831 Precorrin 3B synthase CobZ Alide_4304 e6fdedb42d4c67d78d927b86ba79ba93 478 SUPERFAMILY SSF56425 264 401 1.08E-23 T 12-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 Alide_4626 4723e121b25a6455ea6a896dce5a4b22 642 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 98 104 - T 12-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Alide_4626 4723e121b25a6455ea6a896dce5a4b22 642 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 450 464 1.0E-11 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Alide_4626 4723e121b25a6455ea6a896dce5a4b22 642 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 95 107 1.0E-11 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Alide_4626 4723e121b25a6455ea6a896dce5a4b22 642 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 427 449 1.0E-11 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Alide_4626 4723e121b25a6455ea6a896dce5a4b22 642 Pfam PF01555 DNA methylase 95 470 1.0E-35 T 12-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 Alide_4626 4723e121b25a6455ea6a896dce5a4b22 642 SUPERFAMILY SSF53335 72 480 3.12E-49 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_4626 4723e121b25a6455ea6a896dce5a4b22 642 PIRSF PIRSF015855 3 594 1.1E-94 T 12-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Alide_1638 54a9beff30b751e0f06261a095ba69c5 262 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 141 258 7.9E-34 T 12-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal Alide_1638 54a9beff30b751e0f06261a095ba69c5 262 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 10 261 19.556 T 12-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 Alide_1638 54a9beff30b751e0f06261a095ba69c5 262 Gene3D G3DSA:1.25.40.10 141 262 3.5E-30 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_1638 54a9beff30b751e0f06261a095ba69c5 262 Pfam PF16331 TolA binding protein trimerisation 45 125 9.7E-11 T 12-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 Alide_1638 54a9beff30b751e0f06261a095ba69c5 262 SUPERFAMILY SSF48452 145 256 1.12E-13 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_1638 54a9beff30b751e0f06261a095ba69c5 262 Pfam PF13525 Outer membrane lipoprotein 142 262 2.1E-11 T 12-10-2018 IPR039565 Outer membrane lipoprotein BamD-like Alide_4112 f7ce321c46fe11e74039cb8535361532 414 SUPERFAMILY SSF50182 182 249 1.67E-11 T 12-10-2018 IPR010920 LSM domain superfamily Alide_4112 f7ce321c46fe11e74039cb8535361532 414 Pfam PF00924 Mechanosensitive ion channel 145 394 1.3E-44 T 12-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Alide_3978 f8b42422e5786622680fb2d6b55e3fdd 594 SUPERFAMILY SSF49265 487 564 9.09E-6 T 12-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 Alide_3978 f8b42422e5786622680fb2d6b55e3fdd 594 Pfam PF08757 CotH kinase protein 141 464 5.7E-51 T 12-10-2018 IPR014867 Spore coat protein CotH Alide_3978 f8b42422e5786622680fb2d6b55e3fdd 594 Gene3D G3DSA:2.60.40.10 482 567 1.3E-5 T 12-10-2018 IPR013783 Immunoglobulin-like fold Alide_1428 d6df7575ea56dc22644764f664db1e07 200 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 168 192 7.9E-6 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_1428 d6df7575ea56dc22644764f664db1e07 200 Pfam PF07589 PEP-CTERM motif 167 191 6.3E-7 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_1454 ecd5b6054addfc6289f8c183539585b2 208 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 21 196 3.4E-36 T 12-10-2018 IPR003740 Uncharacterised membrane protein YitT Alide_4532 bca6172f241e5175ab781ff2ee5833a3 377 Pfam PF06586 TraK protein 154 362 1.8E-13 T 12-10-2018 IPR010563 Pilus assembly TraK Alide_1860 a6edcef7a8456b580428c2c2ffc7fd56 161 Gene3D G3DSA:2.10.109.10 38 154 1.0E-34 T 12-10-2018 Alide_1860 a6edcef7a8456b580428c2c2ffc7fd56 161 SUPERFAMILY SSF51306 27 146 4.06E-27 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_1860 a6edcef7a8456b580428c2c2ffc7fd56 161 Pfam PF00717 Peptidase S24-like 69 125 1.1E-10 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Alide_2468 a05945e5d6ba1ddca24576ff87171511 253 SUPERFAMILY SSF52540 4 227 1.94E-57 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2468 a05945e5d6ba1ddca24576ff87171511 253 Pfam PF00005 ABC transporter 22 169 8.9E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2468 a05945e5d6ba1ddca24576ff87171511 253 SMART SM00382 29 217 4.3E-16 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2468 a05945e5d6ba1ddca24576ff87171511 253 Gene3D G3DSA:3.40.50.300 4 250 3.8E-64 T 12-10-2018 Alide_2468 a05945e5d6ba1ddca24576ff87171511 253 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_4014 c7bfa5c45dffc3ccaac0f4a5560b25b7 241 TIGRFAM TIGR03759 conj_TIGR03759: integrating conjugative element protein, PFL_4693 family 45 238 2.9E-86 T 12-10-2018 IPR022293 Integrating conjugative element protein, PFL4693 Alide_3311 77a6aa89770c0669a62bb3d19ceba6a9 299 Gene3D G3DSA:3.40.50.1980 48 162 4.9E-28 T 12-10-2018 Alide_3311 77a6aa89770c0669a62bb3d19ceba6a9 299 Gene3D G3DSA:3.40.50.1980 166 295 4.0E-22 T 12-10-2018 Alide_3311 77a6aa89770c0669a62bb3d19ceba6a9 299 SUPERFAMILY SSF53807 29 294 4.71E-52 T 12-10-2018 Alide_3311 77a6aa89770c0669a62bb3d19ceba6a9 299 Pfam PF01497 Periplasmic binding protein 51 267 1.9E-24 T 12-10-2018 IPR002491 ABC transporter periplasmic binding domain Alide_2259 657a138d74d95987af6172cbfcced0ce 282 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 29 280 2.1E-76 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase Alide_2259 657a138d74d95987af6172cbfcced0ce 282 SUPERFAMILY SSF64438 11 281 2.38E-75 T 12-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Alide_2259 657a138d74d95987af6172cbfcced0ce 282 Gene3D G3DSA:3.60.140.10 5 282 3.8E-88 T 12-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily Alide_2259 657a138d74d95987af6172cbfcced0ce 282 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 34 281 5.7E-52 T 12-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase Alide_2387 67b7cef559d686d7672181398e31414f 213 Pfam PF06078 Bacterial protein of unknown function (DUF937) 13 151 3.2E-31 T 12-10-2018 IPR009282 Protein of unknown function DUF937 Alide_2387 67b7cef559d686d7672181398e31414f 213 ProSitePatterns PS00018 EF-hand calcium-binding domain. 189 201 - T 12-10-2018 IPR018247 EF-Hand 1, calcium-binding site Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 Pfam PF01016 Ribosomal L27 protein 2 81 8.0E-36 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.9E-37 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.9E-37 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.9E-37 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 27.778 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 12-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 SUPERFAMILY SSF110324 2 80 1.99E-32 T 12-10-2018 Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 8.0E-16 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 1.4E-36 T 12-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0927 f6fd9dbcd91658c155033df5e13aa6de 85 Gene3D G3DSA:2.40.50.100 20 85 1.5E-27 T 12-10-2018 Alide_1741 5300b79cbf1ce08ed9b1a749c1753af4 191 Pfam PF00583 Acetyltransferase (GNAT) family 44 150 1.1E-15 T 12-10-2018 IPR000182 GNAT domain Alide_1741 5300b79cbf1ce08ed9b1a749c1753af4 191 SUPERFAMILY SSF55729 10 176 6.62E-29 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_1741 5300b79cbf1ce08ed9b1a749c1753af4 191 Gene3D G3DSA:3.40.630.30 7 175 1.0E-30 T 12-10-2018 Alide_1388 1d178e6fea1b8f38a406249527dead35 177 Pfam PF04343 Protein of unknown function, DUF488 14 139 5.0E-31 T 12-10-2018 IPR007438 Protein of unknown function DUF488 Alide_1388 1d178e6fea1b8f38a406249527dead35 177 PIRSF PIRSF024492 1 177 4.2E-61 T 12-10-2018 IPR014519 Uncharacterised conserved protein UCP024492 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 Pfam PF00067 Cytochrome P450 173 351 5.7E-16 T 12-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 PRINTS PR00359 B-class P450 signature 257 268 5.4E-24 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 PRINTS PR00359 B-class P450 signature 323 332 5.4E-24 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 PRINTS PR00359 B-class P450 signature 302 317 5.4E-24 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 PRINTS PR00359 B-class P450 signature 119 135 5.4E-24 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 PRINTS PR00359 B-class P450 signature 72 83 5.4E-24 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 PRINTS PR00359 B-class P450 signature 332 343 5.4E-24 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 PRINTS PR00359 B-class P450 signature 274 301 5.4E-24 T 12-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 SUPERFAMILY SSF48264 13 366 2.1E-70 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Alide_3136 9c9f04523d7ea56e618b4a805f19a9bb 382 Gene3D G3DSA:1.10.630.10 2 382 3.3E-88 T 12-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 Alide_3429 7a2d966d90e57acdfa26ec92c505aa9b 330 SUPERFAMILY SSF53850 119 288 3.14E-8 T 12-10-2018 Alide_3429 7a2d966d90e57acdfa26ec92c505aa9b 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 327 6.5E-47 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3429 7a2d966d90e57acdfa26ec92c505aa9b 330 PIRSF PIRSF017082 1 330 5.9E-60 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3429 7a2d966d90e57acdfa26ec92c505aa9b 330 Gene3D G3DSA:3.40.190.10 132 255 2.8E-71 T 12-10-2018 Alide_3429 7a2d966d90e57acdfa26ec92c505aa9b 330 Gene3D G3DSA:3.40.190.150 33 319 2.8E-71 T 12-10-2018 Alide_4139 87f4679f3a8f7f21bea9acf4f4ecaa16 434 Pfam PF12762 ISXO2-like transposase domain 157 353 2.0E-18 T 12-10-2018 IPR024445 ISXO2-like transposase domain Alide_4139 87f4679f3a8f7f21bea9acf4f4ecaa16 434 SMART SM01126 155 353 1.1E-9 T 12-10-2018 IPR024445 ISXO2-like transposase domain Alide_4139 87f4679f3a8f7f21bea9acf4f4ecaa16 434 Pfam PF12760 Transposase zinc-ribbon domain 39 84 2.6E-7 T 12-10-2018 IPR024442 Transposase, zinc-ribbon Alide_3284 1f01294b6b19a7ec47c07ab9e1a9bbfd 258 Gene3D G3DSA:1.10.12.10 201 258 2.5E-18 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3284 1f01294b6b19a7ec47c07ab9e1a9bbfd 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_3284 1f01294b6b19a7ec47c07ab9e1a9bbfd 258 Gene3D G3DSA:3.90.226.10 6 200 6.9E-66 T 12-10-2018 Alide_3284 1f01294b6b19a7ec47c07ab9e1a9bbfd 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 257 1.2E-69 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3284 1f01294b6b19a7ec47c07ab9e1a9bbfd 258 SUPERFAMILY SSF52096 7 257 1.61E-83 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2043 3d29c59d673f4140a7d23634de0df1e0 226 Pfam PF06252 Protein of unknown function (DUF1018) 34 149 2.2E-24 T 12-10-2018 IPR009363 Bacteriophage Mu, Gp16 Alide_2743 e0181c4bc1d49e887c75abecbed2fb96 115 Pfam PF13663 Domain of unknown function (DUF4148) 4 78 7.3E-17 T 12-10-2018 IPR025421 Protein of unknown function DUF4148 Alide_1103 7f99be929a9d39016e8fc7a9be9c8aeb 176 SUPERFAMILY SSF53335 5 150 1.24E-26 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_1103 7f99be929a9d39016e8fc7a9be9c8aeb 176 Pfam PF13489 Methyltransferase domain 3 110 7.3E-9 T 12-10-2018 Alide_1103 7f99be929a9d39016e8fc7a9be9c8aeb 176 Gene3D G3DSA:3.40.50.150 1 156 4.2E-23 T 12-10-2018 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 Gene3D G3DSA:1.20.140.10 237 382 1.1E-50 T 12-10-2018 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 220 7.0E-25 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 380 5.0E-51 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 Gene3D G3DSA:1.10.540.10 8 125 4.3E-38 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 SUPERFAMILY SSF56645 9 245 3.14E-79 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 Gene3D G3DSA:2.40.110.10 126 236 8.2E-41 T 12-10-2018 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 SUPERFAMILY SSF47203 230 380 1.3E-49 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 123 6.3E-31 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 PIRSF PIRSF016578 135 197 0.016 T 12-10-2018 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 PIRSF PIRSF016578 239 372 3.7E-9 T 12-10-2018 Alide_0188 64b46fd733b0361d7cf8d49c8b60d4d8 382 PIRSF PIRSF016578 4 85 0.16 T 12-10-2018 Alide_2949 68b5862dc610673fef72712cdffab6fa 405 SUPERFAMILY SSF89796 3 390 3.79E-127 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2949 68b5862dc610673fef72712cdffab6fa 405 Gene3D G3DSA:3.40.50.10540 4 389 1.6E-118 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2949 68b5862dc610673fef72712cdffab6fa 405 Gene3D G3DSA:3.30.1540.10 231 323 1.6E-118 T 12-10-2018 Alide_2949 68b5862dc610673fef72712cdffab6fa 405 Pfam PF02515 CoA-transferase family III 5 372 1.5E-112 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2453 330f4cda0b81f7fc858bbf04e888449e 198 SUPERFAMILY SSF52218 20 187 6.29E-45 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_2453 330f4cda0b81f7fc858bbf04e888449e 198 Gene3D G3DSA:3.40.50.360 19 198 6.6E-51 T 12-10-2018 IPR029039 Flavoprotein-like superfamily Alide_2453 330f4cda0b81f7fc858bbf04e888449e 198 Pfam PF03358 NADPH-dependent FMN reductase 20 162 2.8E-36 T 12-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Alide_1884 9c0be7470412f6b6f1206f5119f291d9 265 SUPERFAMILY SSF46955 5 53 2.2E-5 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_0518 756d949bd8a97ae61011f9b5976eb1f0 383 Pfam PF11306 Protein of unknown function (DUF3108) 136 375 8.4E-16 T 12-10-2018 IPR021457 Protein of unknown function DUF3108 Alide_0241 ef921a6f747a769705d7fc0b43abc3f5 257 Pfam PF10074 Uncharacterized conserved protein (DUF2285) 128 241 1.5E-29 T 12-10-2018 IPR018754 Protein of unknown function DUF2285 Alide_0021 60bd580dde595d54bbeb69c0b47325b6 267 Gene3D G3DSA:3.30.450.40 89 263 2.1E-34 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0021 60bd580dde595d54bbeb69c0b47325b6 267 SUPERFAMILY SSF46785 19 92 1.82E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0021 60bd580dde595d54bbeb69c0b47325b6 267 Gene3D G3DSA:1.10.10.10 5 80 1.1E-19 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0021 60bd580dde595d54bbeb69c0b47325b6 267 SUPERFAMILY SSF55781 86 259 7.85E-34 T 12-10-2018 Alide_0021 60bd580dde595d54bbeb69c0b47325b6 267 Pfam PF09339 IclR helix-turn-helix domain 21 70 3.4E-13 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0021 60bd580dde595d54bbeb69c0b47325b6 267 Pfam PF01614 Bacterial transcriptional regulator 139 246 2.3E-6 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_0021 60bd580dde595d54bbeb69c0b47325b6 267 SMART SM00346 19 109 8.6E-22 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0564 7f02f9cf64b4725b712501e1660662d1 272 PRINTS PR00164 ABC-2 type transport system membrane protein signature 194 213 8.4E-21 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_0564 7f02f9cf64b4725b712501e1660662d1 272 PRINTS PR00164 ABC-2 type transport system membrane protein signature 214 233 8.4E-21 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_0564 7f02f9cf64b4725b712501e1660662d1 272 PRINTS PR00164 ABC-2 type transport system membrane protein signature 38 59 8.4E-21 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_0564 7f02f9cf64b4725b712501e1660662d1 272 PRINTS PR00164 ABC-2 type transport system membrane protein signature 157 181 8.4E-21 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_0564 7f02f9cf64b4725b712501e1660662d1 272 PIRSF PIRSF006648 1 271 9.3E-31 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_0564 7f02f9cf64b4725b712501e1660662d1 272 Pfam PF01061 ABC-2 type transporter 23 236 1.7E-21 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Alide_1998 1dbf4647990712bdb6f43470ee116f2d 141 Gene3D G3DSA:3.30.420.270 63 130 4.7E-11 T 12-10-2018 Alide_1998 1dbf4647990712bdb6f43470ee116f2d 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 138 3.0E-29 T 12-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Alide_2332 54cc59f31e65eae5662dd50d038bc6d2 264 SMART SM00382 31 225 2.8E-8 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2332 54cc59f31e65eae5662dd50d038bc6d2 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_2332 54cc59f31e65eae5662dd50d038bc6d2 264 SUPERFAMILY SSF52540 2 235 8.04E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2332 54cc59f31e65eae5662dd50d038bc6d2 264 Pfam PF00005 ABC transporter 22 177 4.1E-25 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2332 54cc59f31e65eae5662dd50d038bc6d2 264 Gene3D G3DSA:3.40.50.300 1 254 1.9E-54 T 12-10-2018 Alide_4408 8cb0595235f8686b3a7959da027f68d0 272 PIRSF PIRSF015853 1 272 1.5E-93 T 12-10-2018 IPR007035 Peptidase M55, D-aminopeptidase Alide_4408 8cb0595235f8686b3a7959da027f68d0 272 Pfam PF04951 D-aminopeptidase 1 262 6.5E-94 T 12-10-2018 IPR007035 Peptidase M55, D-aminopeptidase Alide_4408 8cb0595235f8686b3a7959da027f68d0 272 SUPERFAMILY SSF63992 1 271 6.28E-95 T 12-10-2018 IPR036177 Peptidase M55, D-aminopeptidase superfamily Alide_4408 8cb0595235f8686b3a7959da027f68d0 272 Gene3D G3DSA:3.30.1360.130 118 260 8.4E-83 T 12-10-2018 Alide_4408 8cb0595235f8686b3a7959da027f68d0 272 Gene3D G3DSA:3.40.50.10780 1 214 8.4E-83 T 12-10-2018 IPR027476 D-aminopeptidase, N-terminal Alide_2854 7fd6d3c52196febfca63eea2f89c8647 69 Pfam PF11127 Protein of unknown function (DUF2892) 1 63 5.5E-21 T 12-10-2018 IPR021309 Protein of unknown function DUF2892 Alide_0956 d72e85ce57f7aaf15cde7b80d8d57092 521 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 1 517 50.208 T 12-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 Alide_0956 d72e85ce57f7aaf15cde7b80d8d57092 521 Pfam PF03109 ABC1 family 109 229 5.1E-30 T 12-10-2018 IPR004147 UbiB domain Alide_0956 d72e85ce57f7aaf15cde7b80d8d57092 521 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 5 444 9.2E-168 T 12-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 Alide_0956 d72e85ce57f7aaf15cde7b80d8d57092 521 SUPERFAMILY SSF56112 90 435 5.67E-37 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_1397 f733c58260ae34b6a21c62b0fd128cdc 131 PRINTS PR01438 Universal stress protein signature 88 100 4.2E-6 T 12-10-2018 IPR006015 Universal stress protein A Alide_1397 f733c58260ae34b6a21c62b0fd128cdc 131 PRINTS PR01438 Universal stress protein signature 106 128 4.2E-6 T 12-10-2018 IPR006015 Universal stress protein A Alide_1397 f733c58260ae34b6a21c62b0fd128cdc 131 SUPERFAMILY SSF52402 1 128 6.78E-18 T 12-10-2018 Alide_1397 f733c58260ae34b6a21c62b0fd128cdc 131 Pfam PF00582 Universal stress protein family 2 128 1.0E-16 T 12-10-2018 IPR006016 UspA Alide_1397 f733c58260ae34b6a21c62b0fd128cdc 131 Gene3D G3DSA:3.40.50.620 1 128 1.3E-20 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1938 dac209f14df61c7adf4f73c8ee4f256b 196 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 1 183 20.432 T 12-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 Alide_1938 dac209f14df61c7adf4f73c8ee4f256b 196 SUPERFAMILY SSF75420 3 87 2.62E-10 T 12-10-2018 IPR035956 RimP, N-terminal domain superfamily Alide_1938 dac209f14df61c7adf4f73c8ee4f256b 196 Pfam PF02576 RimP N-terminal domain 6 87 4.3E-13 T 12-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal Alide_1002 a5cde69a968e820f5c33af4549b231fb 245 Gene3D G3DSA:3.40.50.12500 1 243 9.0E-72 T 12-10-2018 Alide_1002 a5cde69a968e820f5c33af4549b231fb 245 Pfam PF01177 Asp/Glu/Hydantoin racemase 6 221 2.3E-8 T 12-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Alide_1002 a5cde69a968e820f5c33af4549b231fb 245 PIRSF PIRSF015736 2 242 7.1E-57 T 12-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase Alide_2363 f36854f5792af540ecc0ea72af0b5e07 319 SUPERFAMILY SSF52768 4 318 3.98E-103 T 12-10-2018 IPR023696 Ureohydrolase domain superfamily Alide_2363 f36854f5792af540ecc0ea72af0b5e07 319 Pfam PF00850 Histone deacetylase domain 23 316 1.4E-82 T 12-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Alide_2363 f36854f5792af540ecc0ea72af0b5e07 319 Gene3D G3DSA:3.40.800.20 1 319 3.9E-120 T 12-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Alide_2363 f36854f5792af540ecc0ea72af0b5e07 319 PRINTS PR01270 Histone deacetylase superfamily signature 168 183 1.0E-17 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Alide_2363 f36854f5792af540ecc0ea72af0b5e07 319 PRINTS PR01270 Histone deacetylase superfamily signature 134 157 1.0E-17 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Alide_2363 f36854f5792af540ecc0ea72af0b5e07 319 PRINTS PR01270 Histone deacetylase superfamily signature 246 256 1.0E-17 T 12-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 Alide_2469 c03b30bda732bdc28615fdadf72a44cf 332 Gene3D G3DSA:1.10.3470.10 2 331 1.1E-94 T 12-10-2018 IPR037294 ABC transporter, BtuC-like Alide_2469 c03b30bda732bdc28615fdadf72a44cf 332 Pfam PF01032 FecCD transport family 11 327 2.0E-83 T 12-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Alide_2469 c03b30bda732bdc28615fdadf72a44cf 332 SUPERFAMILY SSF81345 3 327 1.31E-74 T 12-10-2018 IPR037294 ABC transporter, BtuC-like Alide_1764 411f5e22aea1a5adf4a49efd486bb00b 278 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 66 88 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Alide_1764 411f5e22aea1a5adf4a49efd486bb00b 278 Pfam PF01066 CDP-alcohol phosphatidyltransferase 25 88 4.9E-14 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Alide_1764 411f5e22aea1a5adf4a49efd486bb00b 278 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 31 161 1.2E-35 T 12-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 Alide_1764 411f5e22aea1a5adf4a49efd486bb00b 278 Gene3D G3DSA:1.20.120.1760 13 167 6.0E-15 T 12-10-2018 Alide_1333 900799f14c59beead4e9a23c22224cac 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 456 530 5.0E-21 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1333 900799f14c59beead4e9a23c22224cac 548 Gene3D G3DSA:3.40.50.12780 6 442 1.7E-101 T 12-10-2018 Alide_1333 900799f14c59beead4e9a23c22224cac 548 SUPERFAMILY SSF56801 15 540 4.06E-137 T 12-10-2018 Alide_1333 900799f14c59beead4e9a23c22224cac 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 190 201 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_1333 900799f14c59beead4e9a23c22224cac 548 Pfam PF00501 AMP-binding enzyme 26 447 5.4E-90 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_1333 900799f14c59beead4e9a23c22224cac 548 Gene3D G3DSA:3.30.300.310 443 545 1.0E-34 T 12-10-2018 Alide_0045 9de81e1a3661e5ba4905626242f58188 202 Gene3D G3DSA:3.40.30.10 3 195 1.5E-70 T 12-10-2018 Alide_0045 9de81e1a3661e5ba4905626242f58188 202 Gene3D G3DSA:1.20.1050.10 83 188 1.5E-70 T 12-10-2018 Alide_0045 9de81e1a3661e5ba4905626242f58188 202 SUPERFAMILY SSF47616 81 199 1.0E-30 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_0045 9de81e1a3661e5ba4905626242f58188 202 Pfam PF00043 Glutathione S-transferase, C-terminal domain 104 189 2.1E-14 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal Alide_0045 9de81e1a3661e5ba4905626242f58188 202 Pfam PF13417 Glutathione S-transferase, N-terminal domain 11 80 9.9E-9 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_0045 9de81e1a3661e5ba4905626242f58188 202 SUPERFAMILY SSF52833 1 79 6.41E-19 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2790 5451972fa3b00a1cb939b894db8ee79a 401 Gene3D G3DSA:3.30.1540.10 232 329 3.5E-132 T 12-10-2018 Alide_2790 5451972fa3b00a1cb939b894db8ee79a 401 Pfam PF02515 CoA-transferase family III 10 377 6.6E-127 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2790 5451972fa3b00a1cb939b894db8ee79a 401 SUPERFAMILY SSF89796 9 400 1.7E-133 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2790 5451972fa3b00a1cb939b894db8ee79a 401 Gene3D G3DSA:3.40.50.10540 10 392 3.5E-132 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0249 286b56184bf8bccd7588087095ae047f 275 Pfam PF06067 Domain of unknown function (DUF932) 37 264 9.9E-59 T 12-10-2018 IPR026325 Protein of unknown function DUF932 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 178 1.0E-48 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 Gene3D G3DSA:1.10.520.20 2 108 1.1E-21 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 SUPERFAMILY SSF47928 3 108 2.22E-20 T 12-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 178 2.1E-38 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 PRINTS PR00125 ATP synthase delta subunit signature 153 171 4.9E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 PRINTS PR00125 ATP synthase delta subunit signature 88 102 4.9E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 PRINTS PR00125 ATP synthase delta subunit signature 77 88 4.9E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 PRINTS PR00125 ATP synthase delta subunit signature 138 153 4.9E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 PRINTS PR00125 ATP synthase delta subunit signature 7 26 4.9E-24 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0436 1a2e7be1641a5a963121fcf6a399f60e 180 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 180 19.057 T 12-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 Alide_0558 32c590d5d759bc641500837238583985 159 SUPERFAMILY SSF54637 14 157 3.58E-28 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0558 32c590d5d759bc641500837238583985 159 Pfam PF01575 MaoC like domain 25 129 7.0E-5 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_0558 32c590d5d759bc641500837238583985 159 Gene3D G3DSA:3.10.129.10 10 158 1.0E-31 T 12-10-2018 Alide_2349 0d8cd306a92e434ac3c0f31a195e038a 962 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 19 955 0.0 T 12-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Alide_2349 0d8cd306a92e434ac3c0f31a195e038a 962 Gene3D G3DSA:3.40.640.10 530 756 4.9E-57 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2349 0d8cd306a92e434ac3c0f31a195e038a 962 Gene3D G3DSA:3.40.640.10 98 360 8.4E-107 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2349 0d8cd306a92e434ac3c0f31a195e038a 962 SUPERFAMILY SSF53383 19 448 2.45E-103 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2349 0d8cd306a92e434ac3c0f31a195e038a 962 Pfam PF02347 Glycine cleavage system P-protein 457 742 3.1E-11 T 12-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Alide_2349 0d8cd306a92e434ac3c0f31a195e038a 962 Pfam PF02347 Glycine cleavage system P-protein 19 447 9.6E-170 T 12-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Alide_2349 0d8cd306a92e434ac3c0f31a195e038a 962 Gene3D G3DSA:3.90.1150.10 769 908 9.4E-40 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2349 0d8cd306a92e434ac3c0f31a195e038a 962 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 10 961 24.785 T 12-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Alide_2349 0d8cd306a92e434ac3c0f31a195e038a 962 SUPERFAMILY SSF53383 482 956 1.07E-94 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_0851 22160e4351ba3b0b584437efb3894601 405 SUPERFAMILY SSF53822 28 403 3.7E-82 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_0851 22160e4351ba3b0b584437efb3894601 405 Gene3D G3DSA:3.40.50.2300 51 361 1.3E-101 T 12-10-2018 Alide_0851 22160e4351ba3b0b584437efb3894601 405 Gene3D G3DSA:3.40.50.2300 148 369 1.3E-101 T 12-10-2018 Alide_0851 22160e4351ba3b0b584437efb3894601 405 Pfam PF13458 Periplasmic binding protein 28 368 4.0E-83 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_2762 bc375bbac1f5b951dc19bf4b61aa7de7 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 322 1.7E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2762 bc375bbac1f5b951dc19bf4b61aa7de7 329 Gene3D G3DSA:3.40.190.150 34 312 2.5E-88 T 12-10-2018 Alide_2762 bc375bbac1f5b951dc19bf4b61aa7de7 329 PIRSF PIRSF017082 1 325 5.1E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2762 bc375bbac1f5b951dc19bf4b61aa7de7 329 Gene3D G3DSA:3.40.190.10 130 251 2.5E-88 T 12-10-2018 Alide_2762 bc375bbac1f5b951dc19bf4b61aa7de7 329 SUPERFAMILY SSF53850 112 289 1.49E-13 T 12-10-2018 Alide_3411 3cb25435aa130a3ba83be406fe42b9cf 335 Pfam PF12833 Helix-turn-helix domain 255 331 1.2E-17 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_3411 3cb25435aa130a3ba83be406fe42b9cf 335 SMART SM00342 248 330 9.6E-19 T 12-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Alide_3411 3cb25435aa130a3ba83be406fe42b9cf 335 SUPERFAMILY SSF46689 283 331 4.08E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_3411 3cb25435aa130a3ba83be406fe42b9cf 335 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 23 204 1.0E-45 T 12-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal Alide_3411 3cb25435aa130a3ba83be406fe42b9cf 335 Gene3D G3DSA:1.10.10.60 230 334 2.8E-21 T 12-10-2018 Alide_1337 d51e67cfa182ab58376d2e65d0490dfa 258 Pfam PF00005 ABC transporter 42 174 4.1E-29 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1337 d51e67cfa182ab58376d2e65d0490dfa 258 Gene3D G3DSA:3.40.50.300 25 256 3.7E-63 T 12-10-2018 Alide_1337 d51e67cfa182ab58376d2e65d0490dfa 258 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1337 d51e67cfa182ab58376d2e65d0490dfa 258 SUPERFAMILY SSF52540 25 244 5.88E-59 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1337 d51e67cfa182ab58376d2e65d0490dfa 258 SMART SM00382 50 230 3.0E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0095 8b71a6464abb826fcac199728ebc85b3 207 Gene3D G3DSA:1.20.120.1760 12 180 1.9E-11 T 12-10-2018 Alide_0095 8b71a6464abb826fcac199728ebc85b3 207 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 64 86 - T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Alide_0095 8b71a6464abb826fcac199728ebc85b3 207 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 21 161 2.0E-34 T 12-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 Alide_0095 8b71a6464abb826fcac199728ebc85b3 207 Pfam PF01066 CDP-alcohol phosphatidyltransferase 16 86 1.0E-12 T 12-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Alide_4474 d4e95d233e5d94738ccd99d24025e02a 154 Pfam PF04956 TrbC/VIRB2 family 13 110 2.7E-18 T 12-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 Alide_2597 3eb517badba9fabbf458f02dd3fbb99d 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 23 86 3.9E-9 T 12-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Alide_2597 3eb517badba9fabbf458f02dd3fbb99d 290 Gene3D G3DSA:3.40.50.10490 120 288 5.2E-28 T 12-10-2018 Alide_2597 3eb517badba9fabbf458f02dd3fbb99d 290 SUPERFAMILY SSF53697 126 284 2.83E-22 T 12-10-2018 Alide_2597 3eb517badba9fabbf458f02dd3fbb99d 290 SUPERFAMILY SSF46689 22 94 2.33E-14 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2597 3eb517badba9fabbf458f02dd3fbb99d 290 Gene3D G3DSA:1.10.10.10 17 93 9.9E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2597 3eb517badba9fabbf458f02dd3fbb99d 290 Pfam PF01380 SIS domain 153 279 2.6E-20 T 12-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Alide_0120 365f21cc11845f552a8fb6684f46c495 127 Gene3D G3DSA:2.60.120.10 13 126 1.8E-22 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_0120 365f21cc11845f552a8fb6684f46c495 127 SUPERFAMILY SSF51182 8 116 1.13E-25 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_0120 365f21cc11845f552a8fb6684f46c495 127 Pfam PF07883 Cupin domain 45 113 8.1E-16 T 12-10-2018 IPR013096 Cupin 2, conserved barrel Alide_1830 657956797ead4e394083ad2516daf3f0 183 Pfam PF12101 Protein of unknown function (DUF3577) 4 132 4.7E-59 T 12-10-2018 IPR021960 Protein of unknown function DUF3577 Alide_3102 38b68cefefaedb19a4dcfedac8feb70b 327 Gene3D G3DSA:3.40.190.150 32 317 1.8E-118 T 12-10-2018 Alide_3102 38b68cefefaedb19a4dcfedac8feb70b 327 PIRSF PIRSF017082 1 326 6.2E-86 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3102 38b68cefefaedb19a4dcfedac8feb70b 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 322 3.4E-93 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3102 38b68cefefaedb19a4dcfedac8feb70b 327 SUPERFAMILY SSF53850 114 290 6.15E-14 T 12-10-2018 Alide_3102 38b68cefefaedb19a4dcfedac8feb70b 327 Gene3D G3DSA:3.40.190.10 129 252 1.8E-118 T 12-10-2018 Alide_2888 0ae76fe17f4b3e4eb7a86fa18d0482ef 526 SUPERFAMILY SSF52096 16 258 7.97E-65 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2888 0ae76fe17f4b3e4eb7a86fa18d0482ef 526 Pfam PF01039 Carboxyl transferase domain 38 513 9.7E-127 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Alide_2888 0ae76fe17f4b3e4eb7a86fa18d0482ef 526 Gene3D G3DSA:3.90.226.10 265 526 4.8E-90 T 12-10-2018 Alide_2888 0ae76fe17f4b3e4eb7a86fa18d0482ef 526 SUPERFAMILY SSF52096 266 526 6.83E-78 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2888 0ae76fe17f4b3e4eb7a86fa18d0482ef 526 Gene3D G3DSA:3.90.226.10 3 261 5.2E-85 T 12-10-2018 Alide_3296 f8333b3bd57a37e76f688c2accceb8e6 269 Gene3D G3DSA:1.10.12.10 212 269 2.3E-16 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3296 f8333b3bd57a37e76f688c2accceb8e6 269 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 268 1.1E-57 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3296 f8333b3bd57a37e76f688c2accceb8e6 269 Gene3D G3DSA:3.90.226.10 1 209 5.2E-66 T 12-10-2018 Alide_3296 f8333b3bd57a37e76f688c2accceb8e6 269 SUPERFAMILY SSF52096 5 268 5.78E-79 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0712 590e793da73bf217f474f2630d34c1d4 374 Gene3D G3DSA:3.30.420.40 149 334 7.1E-119 T 12-10-2018 Alide_0712 590e793da73bf217f474f2630d34c1d4 374 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 6 374 40.083 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 Alide_0712 590e793da73bf217f474f2630d34c1d4 374 Gene3D G3DSA:3.30.420.40 13 369 7.1E-119 T 12-10-2018 Alide_0712 590e793da73bf217f474f2630d34c1d4 374 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 7 374 3.7E-134 T 12-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 Alide_0712 590e793da73bf217f474f2630d34c1d4 374 SUPERFAMILY SSF53067 9 346 5.96E-24 T 12-10-2018 Alide_0430 9c471720c8171392b1e516bddb3468d1 230 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 70 123 1.0E-19 T 12-10-2018 Alide_0430 9c471720c8171392b1e516bddb3468d1 230 Hamap MF_00013 Octanoyltransferase [lipB]. 2 227 33.765 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Alide_0430 9c471720c8171392b1e516bddb3468d1 230 Pfam PF03099 Biotin/lipoate A/B protein ligase family 57 181 5.4E-7 T 12-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Alide_0430 9c471720c8171392b1e516bddb3468d1 230 SUPERFAMILY SSF55681 2 228 2.9E-61 T 12-10-2018 Alide_0430 9c471720c8171392b1e516bddb3468d1 230 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 66 81 - T 12-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Alide_0430 9c471720c8171392b1e516bddb3468d1 230 PIRSF PIRSF016262 1 230 3.9E-56 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Alide_0430 9c471720c8171392b1e516bddb3468d1 230 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 23 127 1.8E-33 T 12-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Alide_0430 9c471720c8171392b1e516bddb3468d1 230 Gene3D G3DSA:3.30.930.10 1 229 1.1E-58 T 12-10-2018 Alide_1631 42c22e05cba2e979be1d5a3984447f45 253 Pfam PF03746 LamB/YcsF family 5 243 2.6E-99 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Alide_1631 42c22e05cba2e979be1d5a3984447f45 253 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 3 247 45.157 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Alide_1631 42c22e05cba2e979be1d5a3984447f45 253 SUPERFAMILY SSF88713 4 252 8.89E-97 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Alide_1631 42c22e05cba2e979be1d5a3984447f45 253 Gene3D G3DSA:3.20.20.370 3 253 1.8E-99 T 12-10-2018 Alide_1370 4ae0be520b71c95361f1c0e0fcc2cf0f 256 SUPERFAMILY SSF53850 11 255 5.2E-56 T 12-10-2018 Alide_1370 4ae0be520b71c95361f1c0e0fcc2cf0f 256 SMART SM00062 33 256 2.6E-49 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1370 4ae0be520b71c95361f1c0e0fcc2cf0f 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 255 5.8E-54 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1370 4ae0be520b71c95361f1c0e0fcc2cf0f 256 Gene3D G3DSA:3.40.190.10 35 253 8.1E-55 T 12-10-2018 Alide_1370 4ae0be520b71c95361f1c0e0fcc2cf0f 256 Gene3D G3DSA:3.40.190.10 121 216 8.1E-55 T 12-10-2018 Alide_0784 5c59de0da8373b00955c42b68c67d376 162 Pfam PF08909 Domain of unknown function (DUF1854) 33 161 2.4E-48 T 12-10-2018 IPR015005 Domain of unknown function DUF1854 Alide_1609 40ad806cc04d4bb2ff43672551349540 336 SUPERFAMILY SSF51556 26 335 8.16E-41 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_1609 40ad806cc04d4bb2ff43672551349540 336 Pfam PF04909 Amidohydrolase 28 335 1.1E-38 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_1609 40ad806cc04d4bb2ff43672551349540 336 Gene3D G3DSA:3.20.20.140 25 336 2.4E-78 T 12-10-2018 Alide_2574 e3cad38c165f4da3d5eae91267b37bbb 250 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 38 236 3.2E-53 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Alide_2574 e3cad38c165f4da3d5eae91267b37bbb 250 SUPERFAMILY SSF55729 6 239 1.22E-82 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_2574 e3cad38c165f4da3d5eae91267b37bbb 250 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 42 213 5.1E-69 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Alide_2574 e3cad38c165f4da3d5eae91267b37bbb 250 Gene3D G3DSA:3.40.630.70 66 241 4.3E-60 T 12-10-2018 Alide_2574 e3cad38c165f4da3d5eae91267b37bbb 250 Gene3D G3DSA:2.30.210.20 8 65 3.1E-17 T 12-10-2018 Alide_2574 e3cad38c165f4da3d5eae91267b37bbb 250 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 250 93.79 T 12-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 Alide_2182 c9cac20084b9b048d36d4b19a8db1e16 146 PRINTS PR01438 Universal stress protein signature 123 145 2.5E-22 T 12-10-2018 IPR006015 Universal stress protein A Alide_2182 c9cac20084b9b048d36d4b19a8db1e16 146 PRINTS PR01438 Universal stress protein signature 105 117 2.5E-22 T 12-10-2018 IPR006015 Universal stress protein A Alide_2182 c9cac20084b9b048d36d4b19a8db1e16 146 PRINTS PR01438 Universal stress protein signature 2 20 2.5E-22 T 12-10-2018 IPR006015 Universal stress protein A Alide_2182 c9cac20084b9b048d36d4b19a8db1e16 146 PIRSF PIRSF006276 1 146 9.1E-22 T 12-10-2018 IPR006015 Universal stress protein A Alide_2182 c9cac20084b9b048d36d4b19a8db1e16 146 Pfam PF00582 Universal stress protein family 1 145 3.2E-35 T 12-10-2018 IPR006016 UspA Alide_2182 c9cac20084b9b048d36d4b19a8db1e16 146 Gene3D G3DSA:3.40.50.620 1 146 9.6E-40 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_2182 c9cac20084b9b048d36d4b19a8db1e16 146 SUPERFAMILY SSF52402 1 145 1.76E-38 T 12-10-2018 Alide_2114 a660abdc4ceebf6bd6953b89e93deceb 260 SUPERFAMILY SSF56300 20 232 1.5E-22 T 12-10-2018 Alide_2114 a660abdc4ceebf6bd6953b89e93deceb 260 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 260 85.196 T 12-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 Alide_2114 a660abdc4ceebf6bd6953b89e93deceb 260 Pfam PF00149 Calcineurin-like phosphoesterase 19 215 7.3E-9 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Alide_2826 96def019faea88f8a19dd217ab5855bc 423 Gene3D G3DSA:1.10.1200.160 355 388 4.0E-54 T 12-10-2018 Alide_2826 96def019faea88f8a19dd217ab5855bc 423 Pfam PF03743 Bacterial conjugation TrbI-like protein 229 409 9.3E-57 T 12-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI Alide_2826 96def019faea88f8a19dd217ab5855bc 423 Gene3D G3DSA:2.40.128.260 231 407 4.0E-54 T 12-10-2018 Alide_0624 15d845ca65e79fec6c2b5a6d5f76c27e 233 SUPERFAMILY SSF55729 31 167 3.19E-16 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_0624 15d845ca65e79fec6c2b5a6d5f76c27e 233 Gene3D G3DSA:3.40.630.30 27 206 6.3E-23 T 12-10-2018 Alide_0624 15d845ca65e79fec6c2b5a6d5f76c27e 233 Pfam PF00583 Acetyltransferase (GNAT) family 90 158 7.6E-5 T 12-10-2018 IPR000182 GNAT domain Alide_3758 6913e4f60b025aed90c7ef1251602af3 268 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 260 1.4E-52 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3758 6913e4f60b025aed90c7ef1251602af3 268 Gene3D G3DSA:1.10.12.10 205 261 1.3E-15 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3758 6913e4f60b025aed90c7ef1251602af3 268 Gene3D G3DSA:3.90.226.10 5 204 6.5E-59 T 12-10-2018 Alide_3758 6913e4f60b025aed90c7ef1251602af3 268 SUPERFAMILY SSF52096 2 260 5.71E-74 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3427 107efdb4fb68e1dfa5cf7e99d2090606 283 Pfam PF02569 Pantoate-beta-alanine ligase 5 281 4.6E-86 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Alide_3427 107efdb4fb68e1dfa5cf7e99d2090606 283 SUPERFAMILY SSF52374 2 282 1.33E-86 T 12-10-2018 Alide_3427 107efdb4fb68e1dfa5cf7e99d2090606 283 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 6 281 4.2E-73 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Alide_3427 107efdb4fb68e1dfa5cf7e99d2090606 283 Hamap MF_00158 Pantothenate synthetase [panC]. 2 283 34.217 T 12-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Alide_3427 107efdb4fb68e1dfa5cf7e99d2090606 283 Gene3D G3DSA:3.30.1300.10 180 281 2.8E-28 T 12-10-2018 Alide_3427 107efdb4fb68e1dfa5cf7e99d2090606 283 Gene3D G3DSA:3.40.50.620 3 179 9.2E-62 T 12-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Alide_1777 79a69f75cef2fae3dfb3ba8d7338b7d5 363 SUPERFAMILY SSF56112 2 330 1.21E-59 T 12-10-2018 IPR011009 Protein kinase-like domain superfamily Alide_1777 79a69f75cef2fae3dfb3ba8d7338b7d5 363 Pfam PF01636 Phosphotransferase enzyme family 41 267 1.3E-55 T 12-10-2018 IPR002575 Aminoglycoside phosphotransferase Alide_1777 79a69f75cef2fae3dfb3ba8d7338b7d5 363 Gene3D G3DSA:3.30.200.20 18 121 6.1E-36 T 12-10-2018 Alide_1777 79a69f75cef2fae3dfb3ba8d7338b7d5 363 Gene3D G3DSA:3.90.1200.10 122 363 5.5E-97 T 12-10-2018 Alide_1848 f503adcaddd44fb10947e89f970486b7 257 Pfam PF07786 Protein of unknown function (DUF1624) 14 242 4.7E-73 T 12-10-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-2206291|Reactome: R-HSA-6798695 Alide_0736 43c2467f6e2438e49f45eeda24953cda 213 TIGRFAM TIGR03027 pepcterm_export: putative polysaccharide export protein, PEP-CTERM sytem-associated 50 213 8.1E-72 T 12-10-2018 IPR017477 PEP-CTERM, putative polysaccharide export protein Alide_0736 43c2467f6e2438e49f45eeda24953cda 213 Pfam PF10531 SLBB domain 130 178 1.0E-7 T 12-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_0736 43c2467f6e2438e49f45eeda24953cda 213 Gene3D G3DSA:3.10.560.10 123 210 3.7E-17 T 12-10-2018 Alide_0736 43c2467f6e2438e49f45eeda24953cda 213 Gene3D G3DSA:3.30.1950.10 55 122 2.6E-12 T 12-10-2018 Alide_0736 43c2467f6e2438e49f45eeda24953cda 213 Pfam PF02563 Polysaccharide biosynthesis/export protein 46 119 1.3E-20 T 12-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 Alide_2072 69b5ef7d6016ea30d0ae9d8a550347dc 85 SUPERFAMILY SSF57716 50 81 7.13E-6 T 12-10-2018 Alide_2072 69b5ef7d6016ea30d0ae9d8a550347dc 85 Gene3D G3DSA:1.20.120.910 2 82 1.2E-12 T 12-10-2018 Alide_2072 69b5ef7d6016ea30d0ae9d8a550347dc 85 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 50 78 3.8E-11 T 12-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Alide_4164 5475cbc9d7643019934aeab0ddeacfba 387 SUPERFAMILY SSF53901 13 333 1.81E-23 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_4164 5475cbc9d7643019934aeab0ddeacfba 387 Pfam PF02803 Thiolase, C-terminal domain 254 372 4.7E-6 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_4164 5475cbc9d7643019934aeab0ddeacfba 387 SUPERFAMILY SSF53901 246 375 1.27E-25 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_4164 5475cbc9d7643019934aeab0ddeacfba 387 Gene3D G3DSA:3.40.47.10 5 385 9.8E-113 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_4164 5475cbc9d7643019934aeab0ddeacfba 387 PIRSF PIRSF000429 5 381 1.2E-25 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 80 295 7.5E-27 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 369 534 3.2E-53 T 12-10-2018 IPR000160 GGDEF domain Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 SUPERFAMILY SSF53850 79 291 1.71E-30 T 12-10-2018 Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 Gene3D G3DSA:3.30.70.270 358 536 1.3E-59 T 12-10-2018 Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 SMART SM00267 362 536 2.7E-63 T 12-10-2018 IPR000160 GGDEF domain Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 Pfam PF00990 Diguanylate cyclase, GGDEF domain 374 532 1.4E-47 T 12-10-2018 IPR000160 GGDEF domain Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 Gene3D G3DSA:3.40.190.10 166 263 1.1E-25 T 12-10-2018 Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 SUPERFAMILY SSF55073 378 534 2.12E-47 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 SMART SM00062 78 304 6.6E-5 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1289 eea05b1a9a0b904b18d89fc5cb3b3597 538 Gene3D G3DSA:3.40.190.10 75 294 1.1E-25 T 12-10-2018 Alide_4174 1336492e5f6a4d63a5823c7d72ecd821 296 Gene3D G3DSA:3.20.20.140 5 293 3.1E-72 T 12-10-2018 Alide_4174 1336492e5f6a4d63a5823c7d72ecd821 296 Pfam PF04909 Amidohydrolase 28 290 1.7E-36 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_4174 1336492e5f6a4d63a5823c7d72ecd821 296 SUPERFAMILY SSF51556 23 290 2.95E-68 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_3357 bc36491a4ca0c003201caa7bb39d97c2 464 Pfam PF02397 Bacterial sugar transferase 275 458 6.9E-67 T 12-10-2018 IPR003362 Bacterial sugar transferase Alide_3357 bc36491a4ca0c003201caa7bb39d97c2 464 TIGRFAM TIGR03013 EpsB_2: sugar transferase, PEP-CTERM system associated 22 463 9.6E-147 T 12-10-2018 IPR017464 Sugar transferase, PEP-CTERM system associated Alide_3357 bc36491a4ca0c003201caa7bb39d97c2 464 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 33 463 1.3E-119 T 12-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase Alide_3357 bc36491a4ca0c003201caa7bb39d97c2 464 Gene3D G3DSA:3.40.50.720 140 255 3.8E-9 T 12-10-2018 Alide_1172 b37b662e21ba079a81cad3187d5038b4 266 Gene3D G3DSA:1.10.3720.10 11 263 4.9E-40 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1172 b37b662e21ba079a81cad3187d5038b4 266 SUPERFAMILY SSF161098 9 256 1.96E-41 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1172 b37b662e21ba079a81cad3187d5038b4 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 260 2.2E-13 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_3630 7cf52ebc281025fbd09c4c3c64e98694 754 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 537 719 1.5E-39 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3630 7cf52ebc281025fbd09c4c3c64e98694 754 SMART SM00283 491 752 9.1E-79 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3630 7cf52ebc281025fbd09c4c3c64e98694 754 Gene3D G3DSA:1.10.287.950 426 754 4.0E-61 T 12-10-2018 Alide_3630 7cf52ebc281025fbd09c4c3c64e98694 754 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 103 212 4.8E-19 T 12-10-2018 IPR029095 NarX-like, N-terminal Alide_3630 7cf52ebc281025fbd09c4c3c64e98694 754 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 239 337 6.9E-8 T 12-10-2018 IPR029095 NarX-like, N-terminal Alide_3630 7cf52ebc281025fbd09c4c3c64e98694 754 SUPERFAMILY SSF58104 452 753 5.89E-63 T 12-10-2018 Alide_3630 7cf52ebc281025fbd09c4c3c64e98694 754 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 618 647 8.1E-7 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3630 7cf52ebc281025fbd09c4c3c64e98694 754 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 519 548 8.1E-7 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_0471 17f5803b318f0a44f61b8ad39c4e9bbc 109 SUPERFAMILY SSF47413 3 67 4.83E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_0471 17f5803b318f0a44f61b8ad39c4e9bbc 109 SMART SM00530 8 64 6.8E-12 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_0471 17f5803b318f0a44f61b8ad39c4e9bbc 109 Pfam PF13560 Helix-turn-helix domain 4 62 2.5E-15 T 12-10-2018 Alide_0471 17f5803b318f0a44f61b8ad39c4e9bbc 109 Gene3D G3DSA:1.10.260.40 1 85 4.2E-18 T 12-10-2018 Alide_1082 0cf11ae9624cf7063a8cbfd895bc42a0 422 Pfam PF08668 HDOD domain 228 339 2.5E-11 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD Alide_1082 0cf11ae9624cf7063a8cbfd895bc42a0 422 Pfam PF00563 EAL domain 94 210 2.5E-10 T 12-10-2018 IPR001633 EAL domain Alide_1082 0cf11ae9624cf7063a8cbfd895bc42a0 422 Gene3D G3DSA:3.20.20.450 23 214 1.7E-14 T 12-10-2018 IPR035919 EAL domain superfamily Alide_1082 0cf11ae9624cf7063a8cbfd895bc42a0 422 PIRSF PIRSF003180 20 421 1.2E-92 T 12-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing Alide_1082 0cf11ae9624cf7063a8cbfd895bc42a0 422 SUPERFAMILY SSF109604 201 419 3.77E-37 T 12-10-2018 Alide_1082 0cf11ae9624cf7063a8cbfd895bc42a0 422 SMART SM00052 12 215 7.2E-5 T 12-10-2018 IPR001633 EAL domain Alide_1082 0cf11ae9624cf7063a8cbfd895bc42a0 422 Gene3D G3DSA:1.10.3210.10 215 415 9.9E-20 T 12-10-2018 Alide_1082 0cf11ae9624cf7063a8cbfd895bc42a0 422 SUPERFAMILY SSF141868 23 215 1.83E-23 T 12-10-2018 IPR035919 EAL domain superfamily Alide_4293 f111175ff50751364b091e49fce1887d 160 SUPERFAMILY SSF54637 11 156 5.28E-31 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_4293 f111175ff50751364b091e49fce1887d 160 Gene3D G3DSA:3.10.129.10 8 157 3.9E-39 T 12-10-2018 Alide_4293 f111175ff50751364b091e49fce1887d 160 Pfam PF13452 N-terminal half of MaoC dehydratase 20 145 6.9E-8 T 12-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Alide_1852 4cc190976390f26d3baf70bb84844250 294 SUPERFAMILY SSF51735 5 171 4.09E-45 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1852 4cc190976390f26d3baf70bb84844250 294 Pfam PF02153 Prephenate dehydrogenase 17 265 5.8E-71 T 12-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 Alide_1852 4cc190976390f26d3baf70bb84844250 294 Gene3D G3DSA:3.40.50.720 3 177 5.7E-56 T 12-10-2018 Alide_1852 4cc190976390f26d3baf70bb84844250 294 SUPERFAMILY SSF48179 175 283 4.53E-30 T 12-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Alide_1852 4cc190976390f26d3baf70bb84844250 294 Gene3D G3DSA:1.10.3660.10 178 282 5.3E-32 T 12-10-2018 Alide_1590 6600c1dc0d5d4d3a621a9c040c55bae1 312 Pfam PF03547 Membrane transport protein 162 303 2.7E-15 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Alide_1590 6600c1dc0d5d4d3a621a9c040c55bae1 312 Pfam PF03547 Membrane transport protein 5 147 3.9E-10 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Alide_0530 65c8995e5815eb4c7c2e8306b4c60fb6 252 Pfam PF09339 IclR helix-turn-helix domain 11 61 2.3E-11 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0530 65c8995e5815eb4c7c2e8306b4c60fb6 252 SUPERFAMILY SSF55781 76 248 7.85E-23 T 12-10-2018 Alide_0530 65c8995e5815eb4c7c2e8306b4c60fb6 252 Gene3D G3DSA:1.10.10.10 7 82 4.7E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0530 65c8995e5815eb4c7c2e8306b4c60fb6 252 SUPERFAMILY SSF46785 9 82 8.59E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0530 65c8995e5815eb4c7c2e8306b4c60fb6 252 Gene3D G3DSA:3.30.450.40 83 251 1.2E-50 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0530 65c8995e5815eb4c7c2e8306b4c60fb6 252 Pfam PF01614 Bacterial transcriptional regulator 132 247 6.2E-11 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_3244 79067c136560fd1dc7a990351ffbd614 490 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 264 453 1.6E-43 T 12-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Alide_3244 79067c136560fd1dc7a990351ffbd614 490 SUPERFAMILY SSF52317 265 460 1.19E-32 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3244 79067c136560fd1dc7a990351ffbd614 490 Gene3D G3DSA:3.40.50.880 261 448 4.6E-22 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3244 79067c136560fd1dc7a990351ffbd614 490 Pfam PF13500 AAA domain 11 241 1.0E-17 T 12-10-2018 Alide_3244 79067c136560fd1dc7a990351ffbd614 490 Gene3D G3DSA:3.40.50.300 12 256 4.0E-48 T 12-10-2018 Alide_3244 79067c136560fd1dc7a990351ffbd614 490 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 490 154.844 T 12-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Alide_3244 79067c136560fd1dc7a990351ffbd614 490 SUPERFAMILY SSF52540 12 251 1.56E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3244 79067c136560fd1dc7a990351ffbd614 490 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 13 454 2.2E-120 T 12-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Alide_3661 1bee58925caa3da7007871c53286598c 970 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 289 364 5.3E-21 T 12-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 SUPERFAMILY SSF51998 369 909 2.47E-181 T 12-10-2018 Alide_3661 1bee58925caa3da7007871c53286598c 970 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 292 908 6.1E-213 T 12-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 SUPERFAMILY SSF48168 153 368 1.44E-58 T 12-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 PRINTS PR01183 Ribonucleotide reductase large chain signature 655 677 6.3E-45 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 PRINTS PR01183 Ribonucleotide reductase large chain signature 580 591 6.3E-45 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 PRINTS PR01183 Ribonucleotide reductase large chain signature 445 464 6.3E-45 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 PRINTS PR01183 Ribonucleotide reductase large chain signature 759 786 6.3E-45 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 PRINTS PR01183 Ribonucleotide reductase large chain signature 683 706 6.3E-45 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 PRINTS PR01183 Ribonucleotide reductase large chain signature 617 640 6.3E-45 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 Gene3D G3DSA:3.20.70.20 258 908 2.2E-243 T 12-10-2018 Alide_3661 1bee58925caa3da7007871c53286598c 970 Pfam PF02867 Ribonucleotide reductase, barrel domain 370 904 2.2E-181 T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 748 770 - T 12-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Alide_3661 1bee58925caa3da7007871c53286598c 970 Pfam PF03477 ATP cone domain 35 131 1.7E-16 T 12-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Alide_3634 e9990e97b9c1077e809e2eaee2a5fb73 50 Gene3D G3DSA:2.20.28.10 1 50 3.2E-26 T 12-10-2018 Alide_3634 e9990e97b9c1077e809e2eaee2a5fb73 50 PIRSF PIRSF000071 1 50 1.1E-25 T 12-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 Alide_3634 e9990e97b9c1077e809e2eaee2a5fb73 50 SUPERFAMILY SSF57802 1 49 8.58E-21 T 12-10-2018 Alide_3634 e9990e97b9c1077e809e2eaee2a5fb73 50 ProSitePatterns PS00202 Rubredoxin signature. 29 39 - T 12-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 Alide_3634 e9990e97b9c1077e809e2eaee2a5fb73 50 Pfam PF00301 Rubredoxin 1 45 8.9E-22 T 12-10-2018 IPR024935 Rubredoxin domain GO:0005506 Alide_1931 2479d6228b6f50d41538d289b8aef535 1252 SUPERFAMILY SSF103088 1070 1118 1.14E-5 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_1931 2479d6228b6f50d41538d289b8aef535 1252 Pfam PF05359 Domain of Unknown Function (DUF748) 855 1003 2.2E-34 T 12-10-2018 IPR008023 Protein of unknown function DUF748 Alide_1931 2479d6228b6f50d41538d289b8aef535 1252 Pfam PF05359 Domain of Unknown Function (DUF748) 369 505 7.6E-14 T 12-10-2018 IPR008023 Protein of unknown function DUF748 Alide_1931 2479d6228b6f50d41538d289b8aef535 1252 Pfam PF05359 Domain of Unknown Function (DUF748) 598 770 9.7E-19 T 12-10-2018 IPR008023 Protein of unknown function DUF748 Alide_1931 2479d6228b6f50d41538d289b8aef535 1252 Pfam PF05359 Domain of Unknown Function (DUF748) 156 308 3.1E-22 T 12-10-2018 IPR008023 Protein of unknown function DUF748 Alide_1931 2479d6228b6f50d41538d289b8aef535 1252 Pfam PF00691 OmpA family 1075 1119 1.4E-4 T 12-10-2018 IPR006665 OmpA-like domain Alide_0655 93ab58a8b5620301b5da7ac146d631e8 337 Pfam PF05137 Fimbrial assembly protein (PilN) 255 325 6.7E-6 T 12-10-2018 IPR007813 Fimbrial assembly PilN Alide_3248 8f7ed82285a2629379eae13cf2c5a091 213 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_3248 8f7ed82285a2629379eae13cf2c5a091 213 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 10 143 2.6E-22 T 12-10-2018 IPR013362 Pilus modification type IV, PilV Alide_3248 8f7ed82285a2629379eae13cf2c5a091 213 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 33 1.2E-5 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_2897 ec5027eb69da1fad41f840c502ba744a 409 Pfam PF07690 Major Facilitator Superfamily 33 355 3.8E-11 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_2897 ec5027eb69da1fad41f840c502ba744a 409 Gene3D G3DSA:1.20.1250.20 22 402 1.1E-19 T 12-10-2018 Alide_2897 ec5027eb69da1fad41f840c502ba744a 409 SUPERFAMILY SSF103473 11 407 6.41E-32 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_0916 3df5ca547e39329e71040c3c9e7e41d0 292 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 14 126 1.8E-35 T 12-10-2018 IPR010627 Peptidase A24A, N-terminal Alide_0916 3df5ca547e39329e71040c3c9e7e41d0 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 227 242 4.7E-25 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Alide_0916 3df5ca547e39329e71040c3c9e7e41d0 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 204 214 4.7E-25 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Alide_0916 3df5ca547e39329e71040c3c9e7e41d0 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 146 163 4.7E-25 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Alide_0916 3df5ca547e39329e71040c3c9e7e41d0 292 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 215 226 4.7E-25 T 12-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial Alide_0916 3df5ca547e39329e71040c3c9e7e41d0 292 Pfam PF01478 Type IV leader peptidase family 139 247 2.1E-24 T 12-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 SMART SM00968 518 628 2.8E-4 T 12-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 Gene3D G3DSA:3.40.50.300 1 238 1.4E-49 T 12-10-2018 Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 PIRSF PIRSF005719 1 1174 1.4E-246 T 12-10-2018 IPR024704 Structural maintenance of chromosomes protein Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 SUPERFAMILY SSF75553 478 676 2.35E-6 T 12-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 Gene3D G3DSA:3.40.50.300 1014 1174 3.0E-46 T 12-10-2018 Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 SUPERFAMILY SSF52540 2 1167 1.43E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 Pfam PF06470 SMC proteins Flexible Hinge Domain 524 626 7.0E-7 T 12-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1165 0.0 T 12-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1167 22.744 T 12-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Alide_2250 fbd3a56c5ef016e58d737666a890fc59 1174 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1158 1.6E-65 T 12-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Alide_1554 14ef0d5036fc3204ce70af2a5eea394b 185 Pfam PF04279 Intracellular septation protein A 1 175 2.4E-72 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 Alide_1554 14ef0d5036fc3204ce70af2a5eea394b 185 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 19.002 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 Alide_1554 14ef0d5036fc3204ce70af2a5eea394b 185 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 175 5.5E-57 T 12-10-2018 IPR006008 Intracellular septation protein A GO:0016021 Alide_2609 a00c04dbf0db2ea04c0f3fd7fd9fd4fe 196 Gene3D G3DSA:2.40.160.20 23 196 4.9E-56 T 12-10-2018 Alide_2609 a00c04dbf0db2ea04c0f3fd7fd9fd4fe 196 Pfam PF03922 OmpW family 25 196 6.3E-44 T 12-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 Alide_2609 a00c04dbf0db2ea04c0f3fd7fd9fd4fe 196 SUPERFAMILY SSF56925 24 196 2.88E-31 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Alide_3117 0ea4cb3f9c5c401b74b638301b691be6 162 SUPERFAMILY SSF52833 3 154 2.6E-46 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3117 0ea4cb3f9c5c401b74b638301b691be6 162 Pfam PF00578 AhpC/TSA family 5 132 1.3E-31 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Alide_3117 0ea4cb3f9c5c401b74b638301b691be6 162 Gene3D G3DSA:3.40.30.10 2 154 1.6E-42 T 12-10-2018 Alide_3117 0ea4cb3f9c5c401b74b638301b691be6 162 PIRSF PIRSF000239 1 162 7.2E-30 T 12-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Alide_2396 32e6275bd66ae843165c8f1c96e59b51 322 SUPERFAMILY SSF52418 91 310 2.09E-33 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Alide_2396 32e6275bd66ae843165c8f1c96e59b51 322 Gene3D G3DSA:3.40.1030.10 87 320 3.7E-70 T 12-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Alide_2396 32e6275bd66ae843165c8f1c96e59b51 322 Gene3D G3DSA:1.20.970.10 14 84 2.1E-27 T 12-10-2018 Alide_2396 32e6275bd66ae843165c8f1c96e59b51 322 Pfam PF02885 Glycosyl transferase family, helical bundle domain 18 80 1.5E-11 T 12-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Alide_2396 32e6275bd66ae843165c8f1c96e59b51 322 SUPERFAMILY SSF47648 19 83 2.75E-15 T 12-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Alide_0608 51c720cb34ab790efdb0022a0795beea 256 SUPERFAMILY SSF56300 1 232 2.34E-31 T 12-10-2018 Alide_0608 51c720cb34ab790efdb0022a0795beea 256 Pfam PF00149 Calcineurin-like phosphoesterase 18 217 2.3E-9 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Alide_0811 45f8ea0eaad6e694ffeefefdda6eceb5 303 SUPERFAMILY SSF161098 88 283 1.2E-26 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0811 45f8ea0eaad6e694ffeefefdda6eceb5 303 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 12 63 3.2E-5 T 12-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Alide_0811 45f8ea0eaad6e694ffeefefdda6eceb5 303 Gene3D G3DSA:1.10.3720.10 82 299 4.6E-26 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0811 45f8ea0eaad6e694ffeefefdda6eceb5 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 303 4.1E-31 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_4213 73a9254dc0ee61abb65f9264500ed348 224 Gene3D G3DSA:3.40.50.2300 1 122 1.2E-34 T 12-10-2018 Alide_4213 73a9254dc0ee61abb65f9264500ed348 224 SMART SM00448 1 113 2.0E-35 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4213 73a9254dc0ee61abb65f9264500ed348 224 SUPERFAMILY SSF52172 1 174 4.25E-35 T 12-10-2018 IPR011006 CheY-like superfamily Alide_4213 73a9254dc0ee61abb65f9264500ed348 224 SMART SM00862 146 219 6.3E-25 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_4213 73a9254dc0ee61abb65f9264500ed348 224 Gene3D G3DSA:1.10.10.10 124 222 1.5E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4213 73a9254dc0ee61abb65f9264500ed348 224 Pfam PF00072 Response regulator receiver domain 3 113 1.1E-24 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_4213 73a9254dc0ee61abb65f9264500ed348 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 3.2E-22 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_2553 f51c9570d129ce756d3b6c7aeeb68f2d 367 Gene3D G3DSA:2.120.10.30 18 367 2.3E-117 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Alide_2553 f51c9570d129ce756d3b6c7aeeb68f2d 367 Pfam PF07995 Glucose / Sorbosone dehydrogenase 33 364 4.4E-132 T 12-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase Alide_2553 f51c9570d129ce756d3b6c7aeeb68f2d 367 SUPERFAMILY SSF50952 22 366 1.31E-46 T 12-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 Alide_0652 be20e68d9d46acc53c857778d715114a 133 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0652 be20e68d9d46acc53c857778d715114a 133 Pfam PF07963 Prokaryotic N-terminal methylation motif 10 32 7.0E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0652 be20e68d9d46acc53c857778d715114a 133 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 31 1.7E-5 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_1083 285f942f63ec5696e9cbc7aefd53a149 268 SUPERFAMILY SSF47240 54 237 1.12E-15 T 12-10-2018 IPR009078 Ferritin-like superfamily Alide_1083 285f942f63ec5696e9cbc7aefd53a149 268 PIRSF PIRSF012318 1 267 1.3E-92 T 12-10-2018 IPR011197 Uncharacterised conserved protein UCP012318 Alide_1083 285f942f63ec5696e9cbc7aefd53a149 268 Pfam PF04305 Protein of unknown function (DUF455) 14 262 5.5E-90 T 12-10-2018 IPR007402 Protein of unknown function DUF455 Alide_0353 29cc6c54fb3e0cd5831008125f7c484b 305 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 266 284 9.1E-10 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) Alide_0353 29cc6c54fb3e0cd5831008125f7c484b 305 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 162 184 9.1E-10 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) Alide_0353 29cc6c54fb3e0cd5831008125f7c484b 305 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 223 240 9.1E-10 T 12-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) Alide_0353 29cc6c54fb3e0cd5831008125f7c484b 305 SUPERFAMILY SSF63829 41 302 1.66E-65 T 12-10-2018 Alide_0353 29cc6c54fb3e0cd5831008125f7c484b 305 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 45 283 5.4E-45 T 12-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region Alide_0353 29cc6c54fb3e0cd5831008125f7c484b 305 Gene3D G3DSA:2.120.10.30 38 303 2.0E-70 T 12-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Alide_1357 2d5b0cb47fcd936db6a4c6220216c69b 314 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 16 309 4.0E-14 T 12-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Alide_1357 2d5b0cb47fcd936db6a4c6220216c69b 314 Gene3D G3DSA:3.40.50.720 104 286 5.4E-98 T 12-10-2018 Alide_1357 2d5b0cb47fcd936db6a4c6220216c69b 314 SUPERFAMILY SSF51735 103 284 3.35E-54 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_1357 2d5b0cb47fcd936db6a4c6220216c69b 314 Gene3D G3DSA:3.40.50.720 18 308 5.4E-98 T 12-10-2018 Alide_1357 2d5b0cb47fcd936db6a4c6220216c69b 314 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 283 8.8E-52 T 12-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Alide_1357 2d5b0cb47fcd936db6a4c6220216c69b 314 SUPERFAMILY SSF52283 9 137 5.29E-25 T 12-10-2018 Alide_3431 4a90bf9c49c19bce7466187d4b1ea18b 245 Pfam PF01925 Sulfite exporter TauE/SafE 9 236 3.4E-26 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Alide_1845 9202024bb54dd084154b36c9791646a1 383 Gene3D G3DSA:3.10.580.10 226 380 7.6E-34 T 12-10-2018 Alide_1845 9202024bb54dd084154b36c9791646a1 383 SMART SM00116 329 377 1.0E-9 T 12-10-2018 IPR000644 CBS domain Alide_1845 9202024bb54dd084154b36c9791646a1 383 SMART SM00116 249 297 3.3E-7 T 12-10-2018 IPR000644 CBS domain Alide_1845 9202024bb54dd084154b36c9791646a1 383 Pfam PF04982 HPP family 64 180 7.7E-30 T 12-10-2018 IPR007065 HPP Alide_1845 9202024bb54dd084154b36c9791646a1 383 Pfam PF00571 CBS domain 243 295 7.1E-10 T 12-10-2018 IPR000644 CBS domain Alide_1845 9202024bb54dd084154b36c9791646a1 383 Pfam PF00571 CBS domain 324 377 1.0E-11 T 12-10-2018 IPR000644 CBS domain Alide_1845 9202024bb54dd084154b36c9791646a1 383 SUPERFAMILY SSF54631 232 377 1.9E-33 T 12-10-2018 Alide_3873 347d2a8eed02fa9ca6779bb7d8b6d381 267 Gene3D G3DSA:3.40.50.300 39 244 4.8E-5 T 12-10-2018 Alide_2348 0577795f47e1fe3fe62b5e0c758c9ba8 124 Pfam PF01597 Glycine cleavage H-protein 3 120 1.5E-40 T 12-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate Alide_2348 0577795f47e1fe3fe62b5e0c758c9ba8 124 Gene3D G3DSA:2.40.50.100 2 124 1.0E-45 T 12-10-2018 Alide_2348 0577795f47e1fe3fe62b5e0c758c9ba8 124 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 44 73 - T 12-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Alide_2348 0577795f47e1fe3fe62b5e0c758c9ba8 124 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 2 122 37.037 T 12-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Alide_2348 0577795f47e1fe3fe62b5e0c758c9ba8 124 SUPERFAMILY SSF51230 3 120 7.2E-40 T 12-10-2018 IPR011053 Single hybrid motif Alide_2348 0577795f47e1fe3fe62b5e0c758c9ba8 124 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 119 3.2E-43 T 12-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Alide_3792 e7a95dfb98e324744a2f0728d51a655a 213 Gene3D G3DSA:3.40.30.10 3 198 1.7E-42 T 12-10-2018 Alide_3792 e7a95dfb98e324744a2f0728d51a655a 213 Pfam PF01323 DSBA-like thioredoxin domain 4 189 8.0E-21 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Alide_3792 e7a95dfb98e324744a2f0728d51a655a 213 PIRSF PIRSF006386 1 201 3.7E-32 T 12-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Alide_3792 e7a95dfb98e324744a2f0728d51a655a 213 SUPERFAMILY SSF52833 3 193 2.27E-29 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 SUPERFAMILY SSF102886 7 308 4.58E-129 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 8 283 54.02 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 PIRSF PIRSF000166 2 308 9.2E-117 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 PRINTS PR00073 Coprogen oxidase signature 131 153 1.8E-65 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 PRINTS PR00073 Coprogen oxidase signature 101 125 1.8E-65 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 PRINTS PR00073 Coprogen oxidase signature 38 54 1.8E-65 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 PRINTS PR00073 Coprogen oxidase signature 268 294 1.8E-65 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 PRINTS PR00073 Coprogen oxidase signature 168 197 1.8E-65 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 PRINTS PR00073 Coprogen oxidase signature 240 267 1.8E-65 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 172 196 - T 12-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 Pfam PF01218 Coproporphyrinogen III oxidase 14 308 1.0E-123 T 12-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_2151 01e5a37fa4c5cca3d55d969667fd13b0 308 Gene3D G3DSA:3.40.1500.10 2 308 7.5E-128 T 12-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Alide_1790 98cb94abfb1a442342b7f85db3fc0f3b 107 Pfam PF00037 4Fe-4S binding domain 34 55 5.1E-7 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_1790 98cb94abfb1a442342b7f85db3fc0f3b 107 Gene3D G3DSA:3.30.70.20 2 99 1.5E-31 T 12-10-2018 Alide_1790 98cb94abfb1a442342b7f85db3fc0f3b 107 Pfam PF11953 Domain of unknown function (DUF3470) 67 107 2.1E-17 T 12-10-2018 IPR022569 Ferredoxin, C-terminal Alide_1790 98cb94abfb1a442342b7f85db3fc0f3b 107 SUPERFAMILY SSF54862 1 97 3.35E-23 T 12-10-2018 Alide_1790 98cb94abfb1a442342b7f85db3fc0f3b 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_1790 98cb94abfb1a442342b7f85db3fc0f3b 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.3E-15 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Alide_1790 98cb94abfb1a442342b7f85db3fc0f3b 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.3E-15 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Alide_1790 98cb94abfb1a442342b7f85db3fc0f3b 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.3E-15 T 12-10-2018 IPR000813 7Fe ferredoxin GO:0009055 Alide_4129 162498144fca8966a0558051849b9018 389 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 13 370 38.026 T 12-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Alide_4129 162498144fca8966a0558051849b9018 389 Pfam PF02222 ATP-grasp domain 120 287 8.5E-43 T 12-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Alide_4129 162498144fca8966a0558051849b9018 389 SUPERFAMILY SSF52440 9 106 8.78E-23 T 12-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Alide_4129 162498144fca8966a0558051849b9018 389 Gene3D G3DSA:3.30.470.20 187 386 2.0E-72 T 12-10-2018 Alide_4129 162498144fca8966a0558051849b9018 389 Gene3D G3DSA:3.30.1490.20 120 186 1.5E-22 T 12-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Alide_4129 162498144fca8966a0558051849b9018 389 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 13 368 3.2E-108 T 12-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Alide_4129 162498144fca8966a0558051849b9018 389 Gene3D G3DSA:3.40.50.20 6 117 3.9E-37 T 12-10-2018 Alide_4129 162498144fca8966a0558051849b9018 389 SUPERFAMILY SSF56059 109 304 2.47E-55 T 12-10-2018 Alide_4129 162498144fca8966a0558051849b9018 389 SUPERFAMILY SSF51246 310 383 2.2E-16 T 12-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 26 261 1.5E-75 T 12-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 SUPERFAMILY SSF69189 281 373 4.32E-22 T 12-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 113 130 4.8E-19 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 140 153 4.8E-19 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 60 71 4.8E-19 T 12-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 281 370 8.8E-21 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 Gene3D G3DSA:3.40.710.10 19 279 1.2E-85 T 12-10-2018 Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 SUPERFAMILY SSF56601 4 279 1.55E-74 T 12-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 Gene3D G3DSA:2.60.410.10 281 371 8.1E-25 T 12-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_0405 db3c752ded3385523dfecbff90a1a4c0 387 SMART SM00936 281 371 2.2E-31 T 12-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Alide_3410 9617f3168f6d4f0c24845d8e6fec749e 238 SUPERFAMILY SSF52317 26 229 3.7E-41 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3410 9617f3168f6d4f0c24845d8e6fec749e 238 Pfam PF00117 Glutamine amidotransferase class-I 26 182 1.2E-13 T 12-10-2018 IPR017926 Glutamine amidotransferase Alide_3410 9617f3168f6d4f0c24845d8e6fec749e 238 Gene3D G3DSA:3.40.50.880 1 230 2.0E-54 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3599 5fa8b5d9d365022134d1afb9ec3ede8d 118 SUPERFAMILY SSF47413 8 74 2.95E-15 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_3599 5fa8b5d9d365022134d1afb9ec3ede8d 118 SMART SM00530 14 69 2.7E-13 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_3599 5fa8b5d9d365022134d1afb9ec3ede8d 118 Gene3D G3DSA:1.10.260.40 10 110 3.8E-18 T 12-10-2018 Alide_3599 5fa8b5d9d365022134d1afb9ec3ede8d 118 Pfam PF01381 Helix-turn-helix 15 69 6.1E-16 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_4352 d91f379defade7fa92d3ffb7dba766ab 328 SUPERFAMILY SSF53850 117 291 2.35E-12 T 12-10-2018 Alide_4352 d91f379defade7fa92d3ffb7dba766ab 328 Gene3D G3DSA:3.40.190.10 130 253 3.6E-100 T 12-10-2018 Alide_4352 d91f379defade7fa92d3ffb7dba766ab 328 Gene3D G3DSA:3.40.190.150 32 316 3.6E-100 T 12-10-2018 Alide_4352 d91f379defade7fa92d3ffb7dba766ab 328 PIRSF PIRSF017082 2 326 7.7E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4352 d91f379defade7fa92d3ffb7dba766ab 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 323 6.3E-79 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0548 eb4a6fbc30035c4453d9feb44529303f 234 Pfam PF16537 Type II secretion system protein B 174 232 1.8E-20 T 12-10-2018 IPR032389 Type II secretion system protein B Alide_1784 aeea94297d746dc935d04ff6b2050de2 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 6.1E-16 T 12-10-2018 IPR010035 ThiS, thiamine-biosynthesis Alide_1784 aeea94297d746dc935d04ff6b2050de2 65 Gene3D G3DSA:3.10.20.30 1 65 7.6E-19 T 12-10-2018 IPR012675 Beta-grasp domain superfamily Alide_1784 aeea94297d746dc935d04ff6b2050de2 65 SUPERFAMILY SSF54285 1 65 8.37E-15 T 12-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Alide_1784 aeea94297d746dc935d04ff6b2050de2 65 Pfam PF02597 ThiS family 5 65 1.9E-12 T 12-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 Alide_1376 21335ef99e659f5f84b925bb926dcc34 331 Gene3D G3DSA:3.40.50.300 7 331 4.6E-97 T 12-10-2018 Alide_1376 21335ef99e659f5f84b925bb926dcc34 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 327 1.4E-27 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_1376 21335ef99e659f5f84b925bb926dcc34 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 307 1.2E-17 T 12-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Alide_1376 21335ef99e659f5f84b925bb926dcc34 331 SMART SM00382 49 241 1.7E-17 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1376 21335ef99e659f5f84b925bb926dcc34 331 SUPERFAMILY SSF52540 9 263 5.11E-69 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1376 21335ef99e659f5f84b925bb926dcc34 331 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1376 21335ef99e659f5f84b925bb926dcc34 331 Pfam PF00005 ABC transporter 41 191 1.1E-28 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3282 a4d7bdf485fd9c7a286a2d6e635b7f61 133 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 52 113 1.6E-15 T 12-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Alide_3282 a4d7bdf485fd9c7a286a2d6e635b7f61 133 Gene3D G3DSA:1.10.12.20 7 54 1.5E-5 T 12-10-2018 Alide_3282 a4d7bdf485fd9c7a286a2d6e635b7f61 133 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 16 47 9.0E-7 T 12-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Alide_3282 a4d7bdf485fd9c7a286a2d6e635b7f61 133 SUPERFAMILY SSF50249 3 115 2.4E-27 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_4442 e7873d126867364d81c3ae613c2a6d42 71 Pfam PF10892 Protein of unknown function (DUF2688) 8 53 3.0E-15 T 12-10-2018 IPR024392 Protein of unknown function DUF2688 Alide_4442 e7873d126867364d81c3ae613c2a6d42 71 ProDom PD027691 KLEB PLASMID TRANSCRIPTION DNA-BINDING KCRA2 REGULATION 1 71 1.0E-34 T 12-10-2018 IPR024392 Protein of unknown function DUF2688 Alide_4491 6a94a727344b4b48cc9a26c07bfd25f4 988 Pfam PF01526 Tn3 transposase DDE domain 580 966 1.3E-157 T 12-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 Alide_4491 6a94a727344b4b48cc9a26c07bfd25f4 988 Pfam PF13700 Domain of unknown function (DUF4158) 6 169 8.2E-54 T 12-10-2018 IPR025296 Domain of unknown function DUF4158 Alide_0849 6698ede316dacc6ae753c232c49c39d5 290 Pfam PF13679 Methyltransferase domain 46 186 6.2E-41 T 12-10-2018 IPR025714 Methyltransferase domain Alide_0849 6698ede316dacc6ae753c232c49c39d5 290 Gene3D G3DSA:3.40.50.150 53 203 1.8E-7 T 12-10-2018 Alide_0849 6698ede316dacc6ae753c232c49c39d5 290 SUPERFAMILY SSF53335 51 183 1.55E-14 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0748 13fc9abe1d2f4a5e6368e677c86f09a9 383 SUPERFAMILY SSF53756 1 375 6.73E-133 T 12-10-2018 Alide_0748 13fc9abe1d2f4a5e6368e677c86f09a9 383 Gene3D G3DSA:3.40.50.2000 2 369 3.8E-146 T 12-10-2018 Alide_0748 13fc9abe1d2f4a5e6368e677c86f09a9 383 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 25 372 7.4E-118 T 12-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Alide_0748 13fc9abe1d2f4a5e6368e677c86f09a9 383 Gene3D G3DSA:3.40.50.2000 188 359 3.8E-146 T 12-10-2018 Alide_0748 13fc9abe1d2f4a5e6368e677c86f09a9 383 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 374 3.1E-155 T 12-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 Alide_3627 6758a819a3895be77753b3a44263a75a 137 Gene3D G3DSA:3.30.420.140 12 135 1.8E-29 T 12-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 Alide_3627 6758a819a3895be77753b3a44263a75a 137 SUPERFAMILY SSF53098 14 136 7.59E-31 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_3627 6758a819a3895be77753b3a44263a75a 137 Pfam PF03652 Holliday junction resolvase 14 134 4.7E-30 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Alide_3627 6758a819a3895be77753b3a44263a75a 137 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 13 137 18.936 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Alide_3627 6758a819a3895be77753b3a44263a75a 137 SMART SM00732 13 112 2.3E-23 T 12-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Alide_3627 6758a819a3895be77753b3a44263a75a 137 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 16 133 9.8E-23 T 12-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Alide_0274 14ee59649415980a883071e909572c18 259 Pfam PF00753 Metallo-beta-lactamase superfamily 40 237 1.8E-18 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_0274 14ee59649415980a883071e909572c18 259 SMART SM00849 37 237 4.5E-10 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_0274 14ee59649415980a883071e909572c18 259 SUPERFAMILY SSF56281 32 241 6.36E-31 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_0274 14ee59649415980a883071e909572c18 259 Gene3D G3DSA:3.60.15.10 5 241 8.0E-51 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_2081 cb95192677a9394c6ff9416b5460e6f3 387 Pfam PF10123 Mu-like prophage I protein 35 377 2.4E-108 T 12-10-2018 IPR012106 Protease, Mu phage/prophage I type Alide_2081 cb95192677a9394c6ff9416b5460e6f3 387 PIRSF PIRSF016624 1 380 8.8E-78 T 12-10-2018 IPR012106 Protease, Mu phage/prophage I type Alide_0145 a8e2cb1decd32e1371348509e8965bd3 259 Pfam PF09339 IclR helix-turn-helix domain 12 61 2.4E-14 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0145 a8e2cb1decd32e1371348509e8965bd3 259 SMART SM00346 10 100 6.2E-18 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0145 a8e2cb1decd32e1371348509e8965bd3 259 Pfam PF01614 Bacterial transcriptional regulator 132 232 1.5E-5 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_0145 a8e2cb1decd32e1371348509e8965bd3 259 SUPERFAMILY SSF55781 87 254 5.95E-26 T 12-10-2018 Alide_0145 a8e2cb1decd32e1371348509e8965bd3 259 SUPERFAMILY SSF46785 10 83 2.65E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0145 a8e2cb1decd32e1371348509e8965bd3 259 Gene3D G3DSA:3.30.450.40 83 253 2.2E-24 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0145 a8e2cb1decd32e1371348509e8965bd3 259 Gene3D G3DSA:1.10.10.10 2 79 2.7E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4641 688d8a64ff348ac61eaf31a2b629ea2c 224 Pfam PF13700 Domain of unknown function (DUF4158) 13 169 3.2E-24 T 12-10-2018 IPR025296 Domain of unknown function DUF4158 Alide_2893 5477e3f27375f3f2d33cb636c4d80c5e 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.8E-18 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2893 5477e3f27375f3f2d33cb636c4d80c5e 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.8E-18 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2893 5477e3f27375f3f2d33cb636c4d80c5e 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.8E-18 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2893 5477e3f27375f3f2d33cb636c4d80c5e 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 12-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Alide_2893 5477e3f27375f3f2d33cb636c4d80c5e 90 SUPERFAMILY SSF47729 1 90 9.13E-32 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_2893 5477e3f27375f3f2d33cb636c4d80c5e 90 SMART SM00411 1 90 7.1E-39 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2893 5477e3f27375f3f2d33cb636c4d80c5e 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.5E-33 T 12-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Alide_2893 5477e3f27375f3f2d33cb636c4d80c5e 90 Gene3D G3DSA:4.10.520.10 1 90 3.6E-35 T 12-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Alide_2196 ce1b985051f4c929e1c84d5da5ba61bc 156 Gene3D G3DSA:1.20.120.1490 37 144 8.0E-16 T 12-10-2018 Alide_2196 ce1b985051f4c929e1c84d5da5ba61bc 156 Pfam PF13801 Heavy-metal resistance 13 134 3.0E-18 T 12-10-2018 IPR025961 Heavy-metal resistance protein Alide_2906 cead80c872d33d963deac762ca83ae94 324 Pfam PF02653 Branched-chain amino acid transport system / permease component 32 294 3.2E-38 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 Gene3D G3DSA:3.30.540.10 2 145 5.1E-53 T 12-10-2018 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 Gene3D G3DSA:3.40.190.80 146 279 2.7E-34 T 12-10-2018 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 Pfam PF00459 Inositol monophosphatase family 5 260 1.5E-68 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 216 230 - T 12-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 SUPERFAMILY SSF56655 2 267 4.84E-87 T 12-10-2018 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 86 99 - T 12-10-2018 IPR020583 Inositol monophosphatase, metal-binding site Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR00377 Inositol monophosphatase superfamily signature 64 80 4.8E-61 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR00377 Inositol monophosphatase superfamily signature 182 203 4.8E-61 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR00377 Inositol monophosphatase superfamily signature 135 158 4.8E-61 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR00377 Inositol monophosphatase superfamily signature 42 62 4.8E-61 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR00377 Inositol monophosphatase superfamily signature 86 102 4.8E-61 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR00377 Inositol monophosphatase superfamily signature 213 237 4.8E-61 T 12-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR01959 SuhB family inositol monophosphatase signature 203 215 1.0E-26 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR01959 SuhB family inositol monophosphatase signature 109 128 1.0E-26 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR01959 SuhB family inositol monophosphatase signature 161 187 1.0E-26 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Alide_1121 223ff05fc081e7356a2aa8b3da722746 317 PRINTS PR01959 SuhB family inositol monophosphatase signature 21 43 1.0E-26 T 12-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 Alide_1029 fce72ec06665ce0c83d30a37dc44da43 841 Pfam PF13699 Domain of unknown function (DUF4157) 70 143 2.0E-24 T 12-10-2018 IPR025295 Domain of unknown function DUF4157 Alide_2386 e04a95d774dad6a43cffb61f08c2e3cb 145 Pfam PF00571 CBS domain 73 125 8.0E-13 T 12-10-2018 IPR000644 CBS domain Alide_2386 e04a95d774dad6a43cffb61f08c2e3cb 145 Pfam PF00571 CBS domain 14 61 8.0E-9 T 12-10-2018 IPR000644 CBS domain Alide_2386 e04a95d774dad6a43cffb61f08c2e3cb 145 SMART SM00116 15 62 1.2E-4 T 12-10-2018 IPR000644 CBS domain Alide_2386 e04a95d774dad6a43cffb61f08c2e3cb 145 SMART SM00116 80 127 2.1E-8 T 12-10-2018 IPR000644 CBS domain Alide_2386 e04a95d774dad6a43cffb61f08c2e3cb 145 SUPERFAMILY SSF54631 3 142 4.42E-34 T 12-10-2018 Alide_2386 e04a95d774dad6a43cffb61f08c2e3cb 145 Gene3D G3DSA:3.10.580.10 1 132 2.1E-46 T 12-10-2018 Alide_1190 71fc6ddc54ae833f72f50f64b6047038 318 Pfam PF01040 UbiA prenyltransferase family 37 283 4.1E-25 T 12-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 Alide_1190 71fc6ddc54ae833f72f50f64b6047038 318 PIRSF PIRSF005355 13 317 9.4E-46 T 12-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 Alide_4128 83db9d94ca877d7520d9e6b66b829445 165 SUPERFAMILY SSF52255 3 157 1.1E-63 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Alide_4128 83db9d94ca877d7520d9e6b66b829445 165 Pfam PF00731 AIR carboxylase 5 152 2.1E-62 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Alide_4128 83db9d94ca877d7520d9e6b66b829445 165 SMART SM01001 4 155 2.1E-96 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Alide_4128 83db9d94ca877d7520d9e6b66b829445 165 PIRSF PIRSF001338 1 159 1.1E-63 T 12-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 Alide_4128 83db9d94ca877d7520d9e6b66b829445 165 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 6 159 30.987 T 12-10-2018 IPR033747 Class I PurE Alide_4128 83db9d94ca877d7520d9e6b66b829445 165 Gene3D G3DSA:3.40.50.7700 1 164 8.1E-72 T 12-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Alide_4128 83db9d94ca877d7520d9e6b66b829445 165 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 6 154 7.3E-62 T 12-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Alide_3401 f1d0f49309e94c46a6b73bfe29104593 353 Hamap MF_00625 Selenide, water dikinase [selD]. 9 353 43.052 T 12-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Alide_3401 f1d0f49309e94c46a6b73bfe29104593 353 Pfam PF02769 AIR synthase related protein, C-terminal domain 174 347 1.8E-28 T 12-10-2018 IPR010918 PurM-like, C-terminal domain Alide_3401 f1d0f49309e94c46a6b73bfe29104593 353 Gene3D G3DSA:3.90.650.10 169 351 6.5E-49 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_3401 f1d0f49309e94c46a6b73bfe29104593 353 TIGRFAM TIGR00476 selD: selenide, water dikinase 11 319 2.8E-128 T 12-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Alide_3401 f1d0f49309e94c46a6b73bfe29104593 353 SUPERFAMILY SSF55326 11 166 3.53E-42 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_3401 f1d0f49309e94c46a6b73bfe29104593 353 SUPERFAMILY SSF56042 169 347 1.23E-45 T 12-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Alide_3401 f1d0f49309e94c46a6b73bfe29104593 353 Pfam PF00586 AIR synthase related protein, N-terminal domain 55 162 4.4E-21 T 12-10-2018 IPR016188 PurM-like, N-terminal domain Alide_3401 f1d0f49309e94c46a6b73bfe29104593 353 Gene3D G3DSA:3.30.1330.10 5 167 3.1E-50 T 12-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Alide_3401 f1d0f49309e94c46a6b73bfe29104593 353 PIRSF PIRSF036407 6 351 4.2E-113 T 12-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Alide_0998 3cd1a13b5d38f19d6966bc9c036dc4e7 248 SUPERFAMILY SSF161098 25 211 9.94E-42 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0998 3cd1a13b5d38f19d6966bc9c036dc4e7 248 Gene3D G3DSA:1.10.3720.10 22 227 2.0E-49 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0998 3cd1a13b5d38f19d6966bc9c036dc4e7 248 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 225 3.0E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0998 3cd1a13b5d38f19d6966bc9c036dc4e7 248 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 26 119 1.8E-23 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 Gene3D G3DSA:3.40.190.10 115 305 4.1E-40 T 12-10-2018 Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 SUPERFAMILY SSF46785 22 131 2.92E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 SUPERFAMILY SSF53850 109 317 6.67E-34 T 12-10-2018 Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 Gene3D G3DSA:1.10.10.10 21 109 1.2E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 Gene3D G3DSA:3.40.190.10 187 289 4.1E-40 T 12-10-2018 Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 82 5.9E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 Pfam PF03466 LysR substrate binding domain 108 316 2.6E-34 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 60 3.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2761 d6680e6789b35bd3701e2dfba9df6783 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 60 71 3.2E-7 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_1122 87222cbef8b53435b10a30355362603a 270 PIRSF PIRSF004808 8 270 3.1E-58 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 Alide_1122 87222cbef8b53435b10a30355362603a 270 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 11 262 9.9E-50 T 12-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 Alide_1122 87222cbef8b53435b10a30355362603a 270 Pfam PF00588 SpoU rRNA Methylase family 14 183 3.0E-26 T 12-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Alide_1122 87222cbef8b53435b10a30355362603a 270 Gene3D G3DSA:1.10.8.590 202 263 3.8E-21 T 12-10-2018 Alide_1122 87222cbef8b53435b10a30355362603a 270 Gene3D G3DSA:3.40.1280.10 9 191 1.1E-53 T 12-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Alide_1122 87222cbef8b53435b10a30355362603a 270 SUPERFAMILY SSF75217 11 193 1.11E-30 T 12-10-2018 IPR029028 Alpha/beta knot methyltransferases Alide_4481 4a719e7208e4c1fcce7ff5a253289044 254 SUPERFAMILY SSF101082 28 222 4.71E-33 T 12-10-2018 Alide_4481 4a719e7208e4c1fcce7ff5a253289044 254 TIGRFAM TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ 5 254 7.1E-68 T 12-10-2018 IPR014147 Type IV conjugative transfer protein TrbJ Alide_4520 0c91543fd5a8083fd1172c47537788f0 96 Gene3D G3DSA:4.10.430.10 52 96 1.4E-12 T 12-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 Alide_4520 0c91543fd5a8083fd1172c47537788f0 96 SUPERFAMILY SSF81273 56 92 6.67E-9 T 12-10-2018 Alide_4520 0c91543fd5a8083fd1172c47537788f0 96 Pfam PF00816 H-NS histone family 7 84 1.5E-21 T 12-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 Alide_4520 0c91543fd5a8083fd1172c47537788f0 96 SMART SM00528 53 92 1.9E-5 T 12-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 Alide_2390 ab3716cad3ec06fbeab37a31c07a99be 502 Pfam PF02321 Outer membrane efflux protein 74 264 4.5E-24 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2390 ab3716cad3ec06fbeab37a31c07a99be 502 Pfam PF02321 Outer membrane efflux protein 305 489 1.6E-30 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2390 ab3716cad3ec06fbeab37a31c07a99be 502 Gene3D G3DSA:1.20.1600.10 65 492 3.8E-125 T 12-10-2018 Alide_2390 ab3716cad3ec06fbeab37a31c07a99be 502 SUPERFAMILY SSF56954 3 494 7.72E-102 T 12-10-2018 Alide_2390 ab3716cad3ec06fbeab37a31c07a99be 502 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 490 6.6E-105 T 12-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 Alide_2390 ab3716cad3ec06fbeab37a31c07a99be 502 Gene3D G3DSA:2.20.200.10 111 380 3.8E-125 T 12-10-2018 Alide_0383 5123f155d3642ecc7cc3c7be72ad5253 388 Pfam PF02405 Permease MlaE 174 381 4.9E-65 T 12-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 Alide_0383 5123f155d3642ecc7cc3c7be72ad5253 388 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 146 383 6.4E-65 T 12-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Alide_3364 079840e3221511416c9542d58d6f07f2 158 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 15 84 1.1E-7 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Alide_3364 079840e3221511416c9542d58d6f07f2 158 Gene3D G3DSA:3.10.50.40 24 155 3.1E-30 T 12-10-2018 Alide_3364 079840e3221511416c9542d58d6f07f2 158 SUPERFAMILY SSF54534 15 157 1.37E-24 T 12-10-2018 Alide_3364 079840e3221511416c9542d58d6f07f2 158 Gene3D G3DSA:2.40.10.330 81 143 3.1E-30 T 12-10-2018 Alide_3165 738df539cc579cc3e3da5f6b5b22c583 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 255 4.1E-9 T 12-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Alide_3165 738df539cc579cc3e3da5f6b5b22c583 257 SUPERFAMILY SSF52540 7 255 6.15E-61 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3165 738df539cc579cc3e3da5f6b5b22c583 257 SMART SM00382 32 233 1.3E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_3165 738df539cc579cc3e3da5f6b5b22c583 257 Gene3D G3DSA:3.40.50.300 5 256 2.8E-61 T 12-10-2018 Alide_3165 738df539cc579cc3e3da5f6b5b22c583 257 Pfam PF00005 ABC transporter 24 183 5.9E-32 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_3786 a1cbe2e5c40f3e9d750a5948d0e31a41 339 SUPERFAMILY SSF56935 23 339 5.19E-62 T 12-10-2018 Alide_3786 a1cbe2e5c40f3e9d750a5948d0e31a41 339 Gene3D G3DSA:2.40.160.10 23 339 3.2E-69 T 12-10-2018 IPR023614 Porin domain superfamily Alide_3786 a1cbe2e5c40f3e9d750a5948d0e31a41 339 Pfam PF13609 Gram-negative porin 11 316 1.4E-55 T 12-10-2018 Alide_0212 339753af3bfe0059794bb171254ebd48 444 TIGRFAM TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL 2 306 7.1E-66 T 12-10-2018 IPR014150 Conjugal transfer, TrbL Alide_0212 339753af3bfe0059794bb171254ebd48 444 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 37 257 1.6E-50 T 12-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 Alide_1124 ff3aabada7fbc937068ffce24e291d0a 220 SUPERFAMILY SSF55469 1 213 7.85E-42 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Alide_1124 ff3aabada7fbc937068ffce24e291d0a 220 Pfam PF00881 Nitroreductase family 8 193 6.7E-29 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Alide_1124 ff3aabada7fbc937068ffce24e291d0a 220 Gene3D G3DSA:3.40.109.10 1 213 2.8E-61 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Alide_2932 c41ff556aa47d46b8afeb2c7996698ba 476 Gene3D G3DSA:1.10.4100.10 1 316 4.5E-71 T 12-10-2018 Alide_2932 c41ff556aa47d46b8afeb2c7996698ba 476 SUPERFAMILY SSF103378 3 465 4.32E-88 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_2932 c41ff556aa47d46b8afeb2c7996698ba 476 Pfam PF03972 MmgE/PrpD family 7 459 1.4E-84 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PIRSF PIRSF004557 2 435 7.8E-124 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 ProSitePatterns PS00755 Protein secY signature 1. 74 93 - T 12-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 Pfam PF00344 SecY translocase 74 412 1.8E-116 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 SUPERFAMILY SSF103491 8 419 9.94E-131 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 Hamap MF_01465 Protein translocase subunit SecY [secY]. 8 428 29.738 T 12-10-2018 IPR026593 Protein translocase subunit SecY Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 73 93 8.5E-94 T 12-10-2018 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 8.5E-94 T 12-10-2018 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 8.5E-94 T 12-10-2018 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 365 383 8.5E-94 T 12-10-2018 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 8.5E-94 T 12-10-2018 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 114 137 8.5E-94 T 12-10-2018 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 21 39 8.5E-94 T 12-10-2018 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 310 332 8.5E-94 T 12-10-2018 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 8.5E-94 T 12-10-2018 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 12-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 Gene3D G3DSA:1.10.3370.10 6 424 3.0E-162 T 12-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Alide_3963 c01ee65cb1f8417b58c4b0bbc711c4a2 439 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 18 424 8.3E-131 T 12-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Alide_4286 be31210c7dfc5314d0501c58a73c14d9 177 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 177 1.4E-53 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Alide_4286 be31210c7dfc5314d0501c58a73c14d9 177 Pfam PF00436 Single-strand binding protein family 4 108 4.9E-42 T 12-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Alide_4286 be31210c7dfc5314d0501c58a73c14d9 177 Hamap MF_00984 Single-stranded DNA-binding protein. 4 112 38.404 T 12-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Alide_4286 be31210c7dfc5314d0501c58a73c14d9 177 SUPERFAMILY SSF50249 3 177 4.11E-62 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_4286 be31210c7dfc5314d0501c58a73c14d9 177 Gene3D G3DSA:2.40.50.140 2 138 4.4E-48 T 12-10-2018 Alide_4230 4b424e77e63a270d01a861868cdf1616 317 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 96 280 6.1E-48 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Alide_4230 4b424e77e63a270d01a861868cdf1616 317 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 38 283 4.7E-73 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Alide_4230 4b424e77e63a270d01a861868cdf1616 317 Pfam PF02355 Protein export membrane protein 108 291 1.3E-62 T 12-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Alide_4230 4b424e77e63a270d01a861868cdf1616 317 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 10 294 28.841 T 12-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Alide_4230 4b424e77e63a270d01a861868cdf1616 317 SUPERFAMILY SSF82866 74 294 4.05E-40 T 12-10-2018 Alide_4230 4b424e77e63a270d01a861868cdf1616 317 Gene3D G3DSA:1.20.1640.10 89 304 1.1E-12 T 12-10-2018 Alide_4230 4b424e77e63a270d01a861868cdf1616 317 Pfam PF07549 SecD/SecF GG Motif 32 59 5.6E-8 T 12-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Alide_4230 4b424e77e63a270d01a861868cdf1616 317 PRINTS PR01755 Bacterial translocase SecF protein signature 231 246 7.4E-27 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Alide_4230 4b424e77e63a270d01a861868cdf1616 317 PRINTS PR01755 Bacterial translocase SecF protein signature 151 165 7.4E-27 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Alide_4230 4b424e77e63a270d01a861868cdf1616 317 PRINTS PR01755 Bacterial translocase SecF protein signature 199 217 7.4E-27 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Alide_4230 4b424e77e63a270d01a861868cdf1616 317 PRINTS PR01755 Bacterial translocase SecF protein signature 37 52 7.4E-27 T 12-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Alide_1976 db9f99188645c5e144eff4ec4f209fef 413 Pfam PF05762 VWA domain containing CoxE-like protein 182 399 1.5E-53 T 12-10-2018 IPR008912 Uncharacterised protein family CoxE-like Alide_1976 db9f99188645c5e144eff4ec4f209fef 413 Gene3D G3DSA:3.40.50.410 231 361 6.0E-8 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Alide_1976 db9f99188645c5e144eff4ec4f209fef 413 SUPERFAMILY SSF53300 228 365 1.59E-13 T 12-10-2018 IPR036465 von Willebrand factor A-like domain superfamily Alide_1976 db9f99188645c5e144eff4ec4f209fef 413 PIRSF PIRSF010256 13 410 3.4E-92 T 12-10-2018 IPR011195 Uncharacterised conserved protein UCP010256 Alide_2824 4fdee3a5df1ad612c4483a17d77783c6 301 SUPERFAMILY SSF53686 1 299 5.11E-90 T 12-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Alide_2824 4fdee3a5df1ad612c4483a17d77783c6 301 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 299 1.3E-115 T 12-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Alide_2824 4fdee3a5df1ad612c4483a17d77783c6 301 Gene3D G3DSA:3.40.50.1100 42 147 1.5E-105 T 12-10-2018 Alide_2824 4fdee3a5df1ad612c4483a17d77783c6 301 Gene3D G3DSA:3.40.50.1100 11 295 1.5E-105 T 12-10-2018 Alide_2824 4fdee3a5df1ad612c4483a17d77783c6 301 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 288 1.8E-63 T 12-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Alide_2824 4fdee3a5df1ad612c4483a17d77783c6 301 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 37 55 - T 12-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Alide_2824 4fdee3a5df1ad612c4483a17d77783c6 301 TIGRFAM TIGR01138 cysM: cysteine synthase B 6 299 7.5E-134 T 12-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Alide_2501 33cb29750f78f87836119f1814544808 247 SUPERFAMILY SSF53448 11 245 1.78E-30 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_3897 b58fd2a624d07c126a8402b95904f4fe 362 SUPERFAMILY SSF102198 177 361 6.54E-10 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_3897 b58fd2a624d07c126a8402b95904f4fe 362 Gene3D G3DSA:3.50.30.50 157 362 9.3E-10 T 12-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_3897 b58fd2a624d07c126a8402b95904f4fe 362 Pfam PF04199 Putative cyclase 97 287 1.2E-12 T 12-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 Alide_0012 aba6ca75b0725e89267c8cefe387f1b5 536 SUPERFAMILY SSF52096 238 515 1.39E-74 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0012 aba6ca75b0725e89267c8cefe387f1b5 536 Gene3D G3DSA:3.90.226.10 8 270 3.8E-66 T 12-10-2018 Alide_0012 aba6ca75b0725e89267c8cefe387f1b5 536 Pfam PF01039 Carboxyl transferase domain 47 523 5.8E-117 T 12-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Alide_0012 aba6ca75b0725e89267c8cefe387f1b5 536 SUPERFAMILY SSF52096 31 269 4.43E-53 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_0012 aba6ca75b0725e89267c8cefe387f1b5 536 Gene3D G3DSA:3.90.226.10 271 536 6.7E-87 T 12-10-2018 Alide_3681 ec4c0e46e14ba797c9ff8a96f288c2ca 692 SUPERFAMILY SSF50249 206 580 8.0E-71 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_3681 ec4c0e46e14ba797c9ff8a96f288c2ca 692 Pfam PF00773 RNB domain 243 483 5.4E-33 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Alide_3681 ec4c0e46e14ba797c9ff8a96f288c2ca 692 SMART SM00955 235 531 6.9E-64 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Alide_3681 ec4c0e46e14ba797c9ff8a96f288c2ca 692 Pfam PF00773 RNB domain 493 527 2.9E-8 T 12-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 Alide_0803 d300ce1d3888fcd9eca33f70ff402731 272 Pfam PF02654 Cobalamin-5-phosphate synthase 10 263 4.1E-49 T 12-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 Alide_0803 d300ce1d3888fcd9eca33f70ff402731 272 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 272 46.938 T 12-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 Alide_3153 de34efeecca3e71fdbd0c389d372e460 410 Pfam PF13440 Polysaccharide biosynthesis protein 30 318 4.2E-14 T 12-10-2018 Alide_3158 e523a44ce40bbb52424808b955b7fe34 390 Gene3D G3DSA:3.40.640.10 3 263 1.6E-101 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3158 e523a44ce40bbb52424808b955b7fe34 390 SUPERFAMILY SSF53383 10 388 9.49E-121 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3158 e523a44ce40bbb52424808b955b7fe34 390 PIRSF PIRSF000390 7 390 1.1E-119 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Alide_3158 e523a44ce40bbb52424808b955b7fe34 390 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 18 385 1.0E-137 T 12-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Alide_3158 e523a44ce40bbb52424808b955b7fe34 390 Gene3D G3DSA:3.90.1150.10 264 389 4.0E-38 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 PRINTS PR00139 Asparaginase/glutaminase family signature 9 20 9.2E-13 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 PRINTS PR00139 Asparaginase/glutaminase family signature 86 104 9.2E-13 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 9.2E-13 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 Pfam PF00710 Asparaginase, N-terminal 10 199 1.0E-48 T 12-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 SMART SM00870 8 325 5.0E-102 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 SUPERFAMILY SSF53774 8 330 1.31E-84 T 12-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 PIRSF PIRSF001220 3 330 1.9E-79 T 12-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 Gene3D G3DSA:3.40.50.1170 7 212 1.1E-61 T 12-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 Gene3D G3DSA:3.40.50.40 214 330 4.7E-27 T 12-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 Alide_3217 ac7c018b374858b70d6f78fcb1999f0e 331 PIRSF PIRSF500176 6 331 6.2E-75 T 12-10-2018 Alide_2523 f088a1c44d8aa39de778c974c3cf1129 75 Pfam PF10636 Hemin uptake protein hemP 40 75 2.2E-16 T 12-10-2018 IPR019600 Hemin uptake protein HemP Alide_2523 f088a1c44d8aa39de778c974c3cf1129 75 Gene3D G3DSA:2.10.70.10 36 75 1.1E-13 T 12-10-2018 Alide_2134 8c63899869107c5b74284c082dd8d381 787 Gene3D G3DSA:3.30.450.40 615 765 9.9E-26 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_2134 8c63899869107c5b74284c082dd8d381 787 SMART SM00065 629 771 3.1E-11 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_2134 8c63899869107c5b74284c082dd8d381 787 Pfam PF13185 GAF domain 630 757 1.3E-14 T 12-10-2018 IPR003018 GAF domain GO:0005515 Alide_2134 8c63899869107c5b74284c082dd8d381 787 Pfam PF01594 AI-2E family transporter 29 361 3.2E-47 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like Alide_2134 8c63899869107c5b74284c082dd8d381 787 SUPERFAMILY SSF55781 631 760 4.8E-27 T 12-10-2018 Alide_4502 750462010ec37f29d44241ae8f053eed 116 Pfam PF02411 MerT mercuric transport protein 1 116 1.4E-62 T 12-10-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 Alide_1558 3ebf713920df47df06e872915c288a93 411 Gene3D G3DSA:3.40.50.2300 27 363 7.9E-136 T 12-10-2018 Alide_1558 3ebf713920df47df06e872915c288a93 411 Pfam PF13458 Periplasmic binding protein 27 375 1.1E-65 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_1558 3ebf713920df47df06e872915c288a93 411 Gene3D G3DSA:3.40.50.2300 153 405 7.9E-136 T 12-10-2018 Alide_1558 3ebf713920df47df06e872915c288a93 411 SUPERFAMILY SSF53822 26 377 6.77E-67 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_1156 f700ac363f6682bcd906c79fa52bb343 174 SMART SM00986 13 168 8.0E-12 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_1156 f700ac363f6682bcd906c79fa52bb343 174 Pfam PF03167 Uracil DNA glycosylase superfamily 16 166 3.6E-8 T 12-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_1156 f700ac363f6682bcd906c79fa52bb343 174 SMART SM00987 13 168 8.0E-12 T 12-10-2018 Alide_1156 f700ac363f6682bcd906c79fa52bb343 174 SUPERFAMILY SSF52141 12 168 7.06E-34 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_1156 f700ac363f6682bcd906c79fa52bb343 174 Gene3D G3DSA:3.40.470.10 9 171 7.7E-52 T 12-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Alide_1156 f700ac363f6682bcd906c79fa52bb343 174 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 11 164 8.3E-45 T 12-10-2018 IPR026353 Hypoxanthine-DNA glycosylase Alide_0211 48b74099d4e98135fc9c1508ab76a818 234 SUPERFAMILY SSF54427 93 227 7.89E-28 T 12-10-2018 IPR032710 NTF2-like domain superfamily Alide_0211 48b74099d4e98135fc9c1508ab76a818 234 Pfam PF04335 VirB8 protein 23 225 4.2E-68 T 12-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 Alide_0211 48b74099d4e98135fc9c1508ab76a818 234 Gene3D G3DSA:3.10.450.230 109 232 9.7E-6 T 12-10-2018 Alide_0134 8d8a30fcadb25b3d6eaa41fc0581ff07 330 SUPERFAMILY SSF53850 117 289 6.72E-11 T 12-10-2018 Alide_0134 8d8a30fcadb25b3d6eaa41fc0581ff07 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 325 7.4E-88 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0134 8d8a30fcadb25b3d6eaa41fc0581ff07 330 Gene3D G3DSA:3.40.190.150 35 320 6.7E-113 T 12-10-2018 Alide_0134 8d8a30fcadb25b3d6eaa41fc0581ff07 330 Gene3D G3DSA:3.40.190.10 132 255 6.7E-113 T 12-10-2018 Alide_0134 8d8a30fcadb25b3d6eaa41fc0581ff07 330 PIRSF PIRSF017082 3 329 3.3E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0344 56e7a0568e911ef9e2e27824f1a7854a 250 Gene3D G3DSA:1.10.10.10 13 76 3.5E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0344 56e7a0568e911ef9e2e27824f1a7854a 250 Pfam PF09339 IclR helix-turn-helix domain 17 66 1.3E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_0344 56e7a0568e911ef9e2e27824f1a7854a 250 Gene3D G3DSA:3.30.450.40 83 162 4.2E-16 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0344 56e7a0568e911ef9e2e27824f1a7854a 250 Gene3D G3DSA:3.30.450.40 163 237 3.9E-17 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0344 56e7a0568e911ef9e2e27824f1a7854a 250 SUPERFAMILY SSF55781 81 233 2.07E-34 T 12-10-2018 Alide_0344 56e7a0568e911ef9e2e27824f1a7854a 250 Pfam PF01614 Bacterial transcriptional regulator 165 231 4.5E-12 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_0344 56e7a0568e911ef9e2e27824f1a7854a 250 SUPERFAMILY SSF46785 17 86 3.31E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0344 56e7a0568e911ef9e2e27824f1a7854a 250 SMART SM00346 15 104 3.4E-17 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_1194 0df00156cb110528493b0212998b1fde 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 32 337 3.4E-50 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_2335 070a1ce58f1582e7f35e4d93c9f0e872 526 Pfam PF00732 GMC oxidoreductase 16 307 6.5E-18 T 12-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 Alide_2335 070a1ce58f1582e7f35e4d93c9f0e872 526 SUPERFAMILY SSF51905 15 522 7.02E-58 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2335 070a1ce58f1582e7f35e4d93c9f0e872 526 Gene3D G3DSA:3.50.50.60 14 188 1.1E-18 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2335 070a1ce58f1582e7f35e4d93c9f0e872 526 Pfam PF05199 GMC oxidoreductase 396 512 1.7E-17 T 12-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 Alide_2335 070a1ce58f1582e7f35e4d93c9f0e872 526 Gene3D G3DSA:3.50.50.60 430 525 4.5E-15 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2335 070a1ce58f1582e7f35e4d93c9f0e872 526 Gene3D G3DSA:3.50.50.60 210 324 3.7E-6 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2335 070a1ce58f1582e7f35e4d93c9f0e872 526 SUPERFAMILY SSF54373 338 462 3.61E-12 T 12-10-2018 Alide_0235 69787d4a92aad62319a85848c8ab634d 199 SUPERFAMILY SSF51306 72 194 1.1E-19 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_0235 69787d4a92aad62319a85848c8ab634d 199 Gene3D G3DSA:2.10.109.10 91 195 2.2E-6 T 12-10-2018 Alide_0235 69787d4a92aad62319a85848c8ab634d 199 Pfam PF10502 Signal peptidase, peptidase S26 50 195 2.0E-53 T 12-10-2018 IPR019533 Peptidase S26 Alide_4144 0cfb42e0403e873a7707701e0cb8fcf3 231 Pfam PF03922 OmpW family 23 231 1.2E-27 T 12-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 Alide_4144 0cfb42e0403e873a7707701e0cb8fcf3 231 SUPERFAMILY SSF56925 23 231 1.26E-18 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Alide_4144 0cfb42e0403e873a7707701e0cb8fcf3 231 Gene3D G3DSA:2.40.160.20 18 231 2.1E-52 T 12-10-2018 Alide_2214 239656c449e783526fa8bc06b2818d6e 242 Pfam PF00929 Exonuclease 5 166 2.9E-35 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_2214 239656c449e783526fa8bc06b2818d6e 242 SMART SM00479 3 175 7.8E-47 T 12-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III Alide_2214 239656c449e783526fa8bc06b2818d6e 242 SUPERFAMILY SSF53098 3 176 1.17E-52 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_2214 239656c449e783526fa8bc06b2818d6e 242 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 5 182 1.2E-60 T 12-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_2214 239656c449e783526fa8bc06b2818d6e 242 Gene3D G3DSA:3.30.420.10 2 180 3.3E-53 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_2214 239656c449e783526fa8bc06b2818d6e 242 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 3 232 4.0E-88 T 12-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Alide_3679 5886b0663b02f114cd6926bfd240f83c 193 Pfam PF13668 Ferritin-like domain 53 184 3.2E-36 T 12-10-2018 Alide_3679 5886b0663b02f114cd6926bfd240f83c 193 SUPERFAMILY SSF47240 50 191 1.56E-39 T 12-10-2018 IPR009078 Ferritin-like superfamily Alide_3679 5886b0663b02f114cd6926bfd240f83c 193 Gene3D G3DSA:1.20.1260.10 44 187 2.4E-13 T 12-10-2018 IPR012347 Ferritin-like Alide_0619 cf08879f6a28e2420b7eb58924d27bb3 300 Pfam PF12697 Alpha/beta hydrolase family 113 269 2.6E-8 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_0619 cf08879f6a28e2420b7eb58924d27bb3 300 SUPERFAMILY SSF53474 105 263 7.74E-25 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0619 cf08879f6a28e2420b7eb58924d27bb3 300 Gene3D G3DSA:3.40.50.1820 91 300 4.9E-41 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2616 008b59a0ac5fa09d8ff056a5afb08ed4 139 PIRSF PIRSF016789 21 139 6.1E-32 T 12-10-2018 IPR007401 Protein of unknown function DUF454 Alide_2616 008b59a0ac5fa09d8ff056a5afb08ed4 139 Pfam PF04304 Protein of unknown function (DUF454) 22 136 9.2E-34 T 12-10-2018 IPR007401 Protein of unknown function DUF454 Alide_2796 c71d45badb94d64ce82c9f79ef168288 105 Pfam PF13937 Domain of unknown function (DUF4212) 25 90 1.7E-16 T 12-10-2018 IPR019886 Sodium symporter small subunit, predicted Alide_2796 c71d45badb94d64ce82c9f79ef168288 105 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 26 90 8.3E-18 T 12-10-2018 IPR019886 Sodium symporter small subunit, predicted Alide_1415 679d70fedc1181256c5519c31a59cd84 313 Gene3D G3DSA:3.40.50.720 15 313 3.2E-72 T 12-10-2018 Alide_1415 679d70fedc1181256c5519c31a59cd84 313 Pfam PF01370 NAD dependent epimerase/dehydratase family 26 239 1.9E-8 T 12-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Alide_1415 679d70fedc1181256c5519c31a59cd84 313 SUPERFAMILY SSF51735 19 311 2.24E-35 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2829 5d12de0e7df17298077c3d87767f53d1 450 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 37 256 5.3E-53 T 12-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 Alide_2829 5d12de0e7df17298077c3d87767f53d1 450 TIGRFAM TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL 1 305 2.1E-65 T 12-10-2018 IPR014150 Conjugal transfer, TrbL Alide_1179 1c7ab9d3f8eba8d7e2e2c97a9ef555b5 185 Gene3D G3DSA:3.30.40.60 73 156 3.0E-21 T 12-10-2018 Alide_1179 1c7ab9d3f8eba8d7e2e2c97a9ef555b5 185 Pfam PF14279 HNH endonuclease 91 145 5.9E-16 T 12-10-2018 IPR029471 HNH endonuclease 5 Alide_1179 1c7ab9d3f8eba8d7e2e2c97a9ef555b5 185 SMART SM00507 80 131 1.8E-9 T 12-10-2018 IPR003615 HNH nuclease Alide_1983 b0d2ea6b68830261242ea3f654b5a0e1 321 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 7 308 3.9E-44 T 12-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Alide_1983 b0d2ea6b68830261242ea3f654b5a0e1 321 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 14 314 2.4E-21 T 12-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Alide_2996 920cc83c9978b9049336626efef689db 674 Pfam PF11981 Domain of unknown function (DUF3482) 528 612 5.8E-10 T 12-10-2018 IPR021871 Protein of unknown function DUF3482 Alide_2996 920cc83c9978b9049336626efef689db 674 Pfam PF11067 Protein of unknown function (DUF2868) 194 351 9.3E-22 T 12-10-2018 IPR021296 Protein of unknown function DUF2868 Alide_2593 fa7e1e7cd6e8d7aef2f4204700b752ae 323 Gene3D G3DSA:3.40.190.150 31 314 1.5E-91 T 12-10-2018 Alide_2593 fa7e1e7cd6e8d7aef2f4204700b752ae 323 Gene3D G3DSA:3.40.190.10 126 249 1.5E-91 T 12-10-2018 Alide_2593 fa7e1e7cd6e8d7aef2f4204700b752ae 323 PIRSF PIRSF017082 1 323 2.8E-106 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2593 fa7e1e7cd6e8d7aef2f4204700b752ae 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 319 1.7E-57 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2593 fa7e1e7cd6e8d7aef2f4204700b752ae 323 SUPERFAMILY SSF53850 113 288 3.75E-14 T 12-10-2018 Alide_3772 a00e261e78b9c03e0f155c2051677c15 90 SUPERFAMILY SSF54593 14 81 2.82E-9 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_3772 a00e261e78b9c03e0f155c2051677c15 90 Gene3D G3DSA:3.10.180.10 3 90 6.9E-9 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2017 ed486a836992554b47b0df84f75056ae 319 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 3 277 3.0E-91 T 12-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis Alide_2017 ed486a836992554b47b0df84f75056ae 319 PIRSF PIRSF006230 1 282 1.6E-89 T 12-10-2018 IPR016478 GTPase, MTG1 Alide_2017 ed486a836992554b47b0df84f75056ae 319 Gene3D G3DSA:1.10.1580.10 176 269 1.1E-21 T 12-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily Alide_2017 ed486a836992554b47b0df84f75056ae 319 Pfam PF01926 50S ribosome-binding GTPase 116 181 2.0E-15 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_2017 ed486a836992554b47b0df84f75056ae 319 Gene3D G3DSA:3.40.50.300 3 171 5.2E-36 T 12-10-2018 Alide_2017 ed486a836992554b47b0df84f75056ae 319 SUPERFAMILY SSF52540 10 185 1.21E-36 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0642 fef92d44f8a49459004888df86e49fc9 353 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 337 1.0E-148 T 12-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Alide_0642 fef92d44f8a49459004888df86e49fc9 353 SUPERFAMILY SSF51735 2 347 1.44E-85 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0642 fef92d44f8a49459004888df86e49fc9 353 Gene3D G3DSA:3.40.50.720 2 322 4.0E-126 T 12-10-2018 Alide_0642 fef92d44f8a49459004888df86e49fc9 353 Pfam PF16363 GDP-mannose 4,6 dehydratase 3 323 5.1E-97 T 12-10-2018 IPR016040 NAD(P)-binding domain Alide_0642 fef92d44f8a49459004888df86e49fc9 353 Gene3D G3DSA:3.90.25.10 200 330 4.0E-126 T 12-10-2018 Alide_3660 093e57635875563f77df27b10f49afb5 193 SMART SM00644 24 172 2.5E-43 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Alide_3660 093e57635875563f77df27b10f49afb5 193 Gene3D G3DSA:3.40.80.10 11 186 1.0E-56 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Alide_3660 093e57635875563f77df27b10f49afb5 193 SUPERFAMILY SSF55846 11 184 3.8E-61 T 12-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Alide_3660 093e57635875563f77df27b10f49afb5 193 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 35 173 5.1E-29 T 12-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 Alide_3733 09dfad4fd858ef12a7cfb5b884e65856 292 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 288 37.598 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Alide_3733 09dfad4fd858ef12a7cfb5b884e65856 292 Pfam PF01678 Diaminopimelate epimerase 165 280 3.2E-26 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Alide_3733 09dfad4fd858ef12a7cfb5b884e65856 292 Pfam PF01678 Diaminopimelate epimerase 5 124 7.0E-32 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Alide_3733 09dfad4fd858ef12a7cfb5b884e65856 292 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 3 286 4.4E-84 T 12-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Alide_3733 09dfad4fd858ef12a7cfb5b884e65856 292 Gene3D G3DSA:3.10.310.10 121 281 2.3E-92 T 12-10-2018 Alide_3733 09dfad4fd858ef12a7cfb5b884e65856 292 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 12-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Alide_3733 09dfad4fd858ef12a7cfb5b884e65856 292 SUPERFAMILY SSF54506 3 289 1.83E-48 T 12-10-2018 Alide_3733 09dfad4fd858ef12a7cfb5b884e65856 292 Gene3D G3DSA:3.10.310.10 5 284 2.3E-92 T 12-10-2018 Alide_2492 1291e24b8f69b909446066cbeae1cc6a 153 PIRSF PIRSF000709 87 123 34.0 T 12-10-2018 Alide_2492 1291e24b8f69b909446066cbeae1cc6a 153 PIRSF PIRSF000709 3 75 0.0021 T 12-10-2018 Alide_2492 1291e24b8f69b909446066cbeae1cc6a 153 SMART SM00855 2 109 2.2E-9 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_2492 1291e24b8f69b909446066cbeae1cc6a 153 SUPERFAMILY SSF53254 3 137 9.03E-22 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_2492 1291e24b8f69b909446066cbeae1cc6a 153 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 77 3.5E-10 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_2492 1291e24b8f69b909446066cbeae1cc6a 153 Gene3D G3DSA:3.40.50.1240 1 149 3.2E-31 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_2116 f79add79cb314fc2d696a8fd4cafd868 195 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 35 191 2.4E-46 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Alide_2116 f79add79cb314fc2d696a8fd4cafd868 195 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 69 86 - T 12-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Alide_2116 f79add79cb314fc2d696a8fd4cafd868 195 Gene3D G3DSA:2.40.100.10 31 194 6.6E-66 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_2116 f79add79cb314fc2d696a8fd4cafd868 195 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 48 63 1.1E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Alide_2116 f79add79cb314fc2d696a8fd4cafd868 195 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 74 86 1.1E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Alide_2116 f79add79cb314fc2d696a8fd4cafd868 195 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 164 1.1E-11 T 12-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 Alide_2116 f79add79cb314fc2d696a8fd4cafd868 195 SUPERFAMILY SSF50891 32 193 6.43E-57 T 12-10-2018 IPR029000 Cyclophilin-like domain superfamily Alide_2116 f79add79cb314fc2d696a8fd4cafd868 195 PIRSF PIRSF001467 24 194 1.3E-26 T 12-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 Alide_3454 2860be973ba0f906c8a71214ab1c0988 321 SUPERFAMILY SSF53850 110 285 6.79E-14 T 12-10-2018 Alide_3454 2860be973ba0f906c8a71214ab1c0988 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 317 6.4E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3454 2860be973ba0f906c8a71214ab1c0988 321 PIRSF PIRSF017082 1 321 7.9E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3454 2860be973ba0f906c8a71214ab1c0988 321 Gene3D G3DSA:3.40.190.10 125 247 7.2E-101 T 12-10-2018 Alide_3454 2860be973ba0f906c8a71214ab1c0988 321 Gene3D G3DSA:3.40.190.150 28 311 7.2E-101 T 12-10-2018 Alide_2273 488c4ecdc87cf617fe8b7f30fe5d3a6a 400 Gene3D G3DSA:3.90.1150.10 13 386 1.5E-115 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2273 488c4ecdc87cf617fe8b7f30fe5d3a6a 400 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 396 7.3E-186 T 12-10-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 Alide_2273 488c4ecdc87cf617fe8b7f30fe5d3a6a 400 Gene3D G3DSA:3.40.640.10 43 289 1.5E-115 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_2273 488c4ecdc87cf617fe8b7f30fe5d3a6a 400 Pfam PF00155 Aminotransferase class I and II 32 392 2.5E-50 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_2273 488c4ecdc87cf617fe8b7f30fe5d3a6a 400 SUPERFAMILY SSF53383 2 397 3.3E-91 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2354 29050ad6b71eee4b932fa446b7862f7f 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.3E-18 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2354 29050ad6b71eee4b932fa446b7862f7f 295 Pfam PF03466 LysR substrate binding domain 91 292 8.3E-29 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2354 29050ad6b71eee4b932fa446b7862f7f 295 SUPERFAMILY SSF46785 4 113 1.62E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2354 29050ad6b71eee4b932fa446b7862f7f 295 Gene3D G3DSA:3.40.190.290 95 294 1.1E-26 T 12-10-2018 Alide_2354 29050ad6b71eee4b932fa446b7862f7f 295 Gene3D G3DSA:1.10.10.10 4 94 1.2E-21 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2354 29050ad6b71eee4b932fa446b7862f7f 295 SUPERFAMILY SSF53850 91 294 2.08E-29 T 12-10-2018 Alide_3755 2effd066483975865fa50ed755f56501 331 PIRSF PIRSF017082 1 330 3.4E-71 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3755 2effd066483975865fa50ed755f56501 331 SUPERFAMILY SSF53850 116 291 2.61E-10 T 12-10-2018 Alide_3755 2effd066483975865fa50ed755f56501 331 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 327 3.7E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3755 2effd066483975865fa50ed755f56501 331 Gene3D G3DSA:3.40.190.150 34 321 2.1E-105 T 12-10-2018 Alide_3755 2effd066483975865fa50ed755f56501 331 Gene3D G3DSA:3.40.190.10 131 256 2.1E-105 T 12-10-2018 Alide_3232 1b840688341a9589a3194cadeb1b6b94 74 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 9 72 9.7E-29 T 12-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor Alide_3232 1b840688341a9589a3194cadeb1b6b94 74 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 19 72 5.0E-20 T 12-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor Alide_3795 ef3b2dac4e708cbd44c0398f38ff252a 304 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 235 244 - T 12-10-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111|Reactome: R-HSA-9033241 Alide_3795 ef3b2dac4e708cbd44c0398f38ff252a 304 SUPERFAMILY SSF51569 5 303 2.01E-70 T 12-10-2018 Alide_3795 ef3b2dac4e708cbd44c0398f38ff252a 304 Gene3D G3DSA:3.20.20.70 2 302 1.1E-128 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3795 ef3b2dac4e708cbd44c0398f38ff252a 304 Pfam PF00682 HMGL-like 8 282 7.0E-55 T 12-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Alide_4121 ba0d938a723706c9b4bcb71d77651181 184 Gene3D G3DSA:3.30.1450.10 55 130 1.5E-25 T 12-10-2018 IPR037873 BamE-like Alide_4121 ba0d938a723706c9b4bcb71d77651181 184 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 15 158 24.566 T 12-10-2018 IPR026592 Outer membrane protein assembly factor BamE Alide_4121 ba0d938a723706c9b4bcb71d77651181 184 Pfam PF04355 SmpA / OmlA family 49 113 3.4E-23 T 12-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 Alide_3918 675d7dc0a0539a875c79709afe67c915 393 Gene3D G3DSA:3.40.50.2300 45 353 1.4E-74 T 12-10-2018 Alide_3918 675d7dc0a0539a875c79709afe67c915 393 Gene3D G3DSA:3.40.50.2300 155 291 1.4E-74 T 12-10-2018 Alide_3918 675d7dc0a0539a875c79709afe67c915 393 Pfam PF13458 Periplasmic binding protein 36 359 1.0E-62 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_3918 675d7dc0a0539a875c79709afe67c915 393 SUPERFAMILY SSF53822 35 380 3.2E-65 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_4254 d60539fc617d75d6d5b4172b250e14b6 124 Gene3D G3DSA:3.40.190.150 48 114 2.6E-35 T 12-10-2018 Alide_4254 d60539fc617d75d6d5b4172b250e14b6 124 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 1 120 4.8E-27 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4254 d60539fc617d75d6d5b4172b250e14b6 124 Gene3D G3DSA:3.40.190.10 1 47 2.6E-35 T 12-10-2018 Alide_2268 1e7955364a259b5409bcabc5c7366ebb 334 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2268 1e7955364a259b5409bcabc5c7366ebb 334 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2268 1e7955364a259b5409bcabc5c7366ebb 334 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.0E-9 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2268 1e7955364a259b5409bcabc5c7366ebb 334 Gene3D G3DSA:1.10.10.10 1 91 1.7E-29 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2268 1e7955364a259b5409bcabc5c7366ebb 334 Gene3D G3DSA:3.40.190.290 92 314 3.3E-26 T 12-10-2018 Alide_2268 1e7955364a259b5409bcabc5c7366ebb 334 SUPERFAMILY SSF53850 87 315 2.48E-23 T 12-10-2018 Alide_2268 1e7955364a259b5409bcabc5c7366ebb 334 SUPERFAMILY SSF46785 1 87 1.4E-23 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2268 1e7955364a259b5409bcabc5c7366ebb 334 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.6E-21 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2268 1e7955364a259b5409bcabc5c7366ebb 334 Pfam PF03466 LysR substrate binding domain 87 311 4.7E-20 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_1549 52586781f6023b36ba7072caa93c8330 106 SUPERFAMILY SSF47781 17 83 1.02E-12 T 12-10-2018 IPR010994 RuvA domain 2-like Alide_1549 52586781f6023b36ba7072caa93c8330 106 Pfam PF12836 Helix-hairpin-helix motif 24 78 2.3E-11 T 12-10-2018 Alide_1549 52586781f6023b36ba7072caa93c8330 106 Gene3D G3DSA:1.10.150.320 11 81 4.9E-13 T 12-10-2018 Alide_2474 073f5508bb1b7671add7351d497db975 458 Gene3D G3DSA:1.10.8.260 323 378 2.4E-29 T 12-10-2018 IPR023166 HI0933-like insert domain superfamily Alide_2474 073f5508bb1b7671add7351d497db975 458 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 40 220 2.7E-78 T 12-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 Alide_2474 073f5508bb1b7671add7351d497db975 458 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 247 454 8.2E-73 T 12-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 Alide_2474 073f5508bb1b7671add7351d497db975 458 SUPERFAMILY SSF160996 251 391 3.14E-9 T 12-10-2018 Alide_2474 073f5508bb1b7671add7351d497db975 458 Pfam PF03486 HI0933-like protein 18 221 1.3E-58 T 12-10-2018 Alide_2474 073f5508bb1b7671add7351d497db975 458 Pfam PF03486 HI0933-like protein 250 447 4.2E-43 T 12-10-2018 Alide_2474 073f5508bb1b7671add7351d497db975 458 Gene3D G3DSA:3.50.50.60 17 232 5.5E-50 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2474 073f5508bb1b7671add7351d497db975 458 Gene3D G3DSA:2.40.30.10 263 395 2.4E-29 T 12-10-2018 Alide_2474 073f5508bb1b7671add7351d497db975 458 SUPERFAMILY SSF51905 17 451 2.46E-42 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2474 073f5508bb1b7671add7351d497db975 458 Gene3D G3DSA:3.50.50.60 396 446 2.4E-29 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2474 073f5508bb1b7671add7351d497db975 458 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 19 41 3.5E-5 T 12-10-2018 Alide_2474 073f5508bb1b7671add7351d497db975 458 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 295 302 3.5E-5 T 12-10-2018 Alide_1143 78788934c816b558dcff4e519d2d2d4a 260 SUPERFAMILY SSF51206 25 164 9.03E-29 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_1143 78788934c816b558dcff4e519d2d2d4a 260 Gene3D G3DSA:2.60.120.10 18 151 7.7E-24 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1143 78788934c816b558dcff4e519d2d2d4a 260 Pfam PF13545 Crp-like helix-turn-helix domain 169 246 1.4E-13 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_1143 78788934c816b558dcff4e519d2d2d4a 260 Gene3D G3DSA:1.10.10.10 167 252 1.3E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1143 78788934c816b558dcff4e519d2d2d4a 260 Pfam PF00027 Cyclic nucleotide-binding domain 51 137 1.7E-15 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_1143 78788934c816b558dcff4e519d2d2d4a 260 SMART SM00100 31 152 1.2E-8 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_1143 78788934c816b558dcff4e519d2d2d4a 260 SMART SM00419 191 239 1.8E-4 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_1143 78788934c816b558dcff4e519d2d2d4a 260 SUPERFAMILY SSF46785 167 247 5.73E-13 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0198 9cec52e2f4aa8c5f85ce4f3016622258 299 Pfam PF03466 LysR substrate binding domain 89 294 5.2E-38 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0198 9cec52e2f4aa8c5f85ce4f3016622258 299 SUPERFAMILY SSF53850 90 296 3.59E-39 T 12-10-2018 Alide_0198 9cec52e2f4aa8c5f85ce4f3016622258 299 Gene3D G3DSA:1.10.10.10 2 90 1.2E-23 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0198 9cec52e2f4aa8c5f85ce4f3016622258 299 SUPERFAMILY SSF46785 2 113 4.35E-25 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0198 9cec52e2f4aa8c5f85ce4f3016622258 299 Gene3D G3DSA:3.40.190.290 92 298 5.0E-37 T 12-10-2018 Alide_0198 9cec52e2f4aa8c5f85ce4f3016622258 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.2E-17 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0653 ca57450e0f59a140f634b7c0a56e81ed 203 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0653 ca57450e0f59a140f634b7c0a56e81ed 203 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 31 8.3E-8 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0653 ca57450e0f59a140f634b7c0a56e81ed 203 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 29 2.8E-5 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_4039 854a60a853b504a4446cd0d1290bde6f 160 SUPERFAMILY SSF52540 12 153 7.08E-7 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4039 854a60a853b504a4446cd0d1290bde6f 160 Pfam PF13521 AAA domain 11 149 2.2E-28 T 12-10-2018 IPR038727 NadR/Ttd14, AAA domain Alide_1114 6b14511acdddbb711542a0fbfa37d9bb 80 Gene3D G3DSA:1.10.287.1040 10 80 1.6E-22 T 12-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 Alide_1114 6b14511acdddbb711542a0fbfa37d9bb 80 SUPERFAMILY SSF116842 11 78 3.79E-19 T 12-10-2018 Alide_1114 6b14511acdddbb711542a0fbfa37d9bb 80 Pfam PF02609 Exonuclease VII small subunit 17 67 6.5E-19 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Alide_1114 6b14511acdddbb711542a0fbfa37d9bb 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 16 56 5.0E-7 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Alide_1114 6b14511acdddbb711542a0fbfa37d9bb 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 16 76 14.024 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Alide_1114 6b14511acdddbb711542a0fbfa37d9bb 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 16 71 2.5E-21 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Alide_1114 6b14511acdddbb711542a0fbfa37d9bb 80 PIRSF PIRSF006488 5 80 4.0E-21 T 12-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Alide_2884 173708f948563f5eab23e3e5a3e2921f 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 2.1E-4 T 12-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Alide_2884 173708f948563f5eab23e3e5a3e2921f 197 Pfam PF08359 YsiA-like protein, C-terminal region 64 171 7.7E-5 T 12-10-2018 IPR013570 Transcription regulator YsiA, C-terminal Alide_2884 173708f948563f5eab23e3e5a3e2921f 197 SUPERFAMILY SSF48498 83 196 8.53E-17 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_2884 173708f948563f5eab23e3e5a3e2921f 197 SUPERFAMILY SSF46689 2 88 1.28E-13 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2884 173708f948563f5eab23e3e5a3e2921f 197 Gene3D G3DSA:1.10.357.10 3 197 1.8E-41 T 12-10-2018 Alide_1630 32925cbf517f3e055ec3236c8f996747 415 Gene3D G3DSA:1.20.1250.20 10 414 9.7E-75 T 12-10-2018 Alide_1630 32925cbf517f3e055ec3236c8f996747 415 Pfam PF07690 Major Facilitator Superfamily 18 277 3.3E-30 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_1630 32925cbf517f3e055ec3236c8f996747 415 ProSitePatterns PS00217 Sugar transport proteins signature 2. 109 134 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_1630 32925cbf517f3e055ec3236c8f996747 415 ProSitePatterns PS00216 Sugar transport proteins signature 1. 278 295 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_1630 32925cbf517f3e055ec3236c8f996747 415 SUPERFAMILY SSF103473 11 409 9.02E-77 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_2683 cf2e055d51842319f0f77482843cd8c9 302 SUPERFAMILY SSF103481 196 291 8.37E-8 T 12-10-2018 Alide_2683 cf2e055d51842319f0f77482843cd8c9 302 Pfam PF00892 EamA-like transporter family 161 286 3.2E-7 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_2683 cf2e055d51842319f0f77482843cd8c9 302 Pfam PF00892 EamA-like transporter family 7 137 3.7E-6 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_2009 46316e28b649d2cbd8b045bc9e10a15b 727 Pfam PF13515 Fusaric acid resistance protein-like 410 533 2.8E-17 T 12-10-2018 Alide_2009 46316e28b649d2cbd8b045bc9e10a15b 727 Pfam PF12805 FUSC-like inner membrane protein yccS 84 321 1.3E-28 T 12-10-2018 IPR032692 Integral membrane protein YccS, N-terminal Alide_0394 6ba95acc21bdb232fe2fc296bb235b39 522 Pfam PF07690 Major Facilitator Superfamily 28 420 6.7E-54 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_0394 6ba95acc21bdb232fe2fc296bb235b39 522 SUPERFAMILY SSF103473 9 505 2.35E-67 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_0394 6ba95acc21bdb232fe2fc296bb235b39 522 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 24 503 1.2E-150 T 12-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 Alide_0394 6ba95acc21bdb232fe2fc296bb235b39 522 Gene3D G3DSA:1.20.1720.10 24 228 1.1E-47 T 12-10-2018 Alide_0394 6ba95acc21bdb232fe2fc296bb235b39 522 Gene3D G3DSA:1.20.1250.20 269 509 8.7E-16 T 12-10-2018 Alide_3407 244e79d63fbae6fb3212bc497f98d418 490 SUPERFAMILY SSF46785 20 94 1.61E-18 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3407 244e79d63fbae6fb3212bc497f98d418 490 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 1.2E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3407 244e79d63fbae6fb3212bc497f98d418 490 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 1.2E-6 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3407 244e79d63fbae6fb3212bc497f98d418 490 SUPERFAMILY SSF53383 131 489 5.41E-88 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3407 244e79d63fbae6fb3212bc497f98d418 490 Pfam PF00155 Aminotransferase class I and II 162 407 2.1E-22 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_3407 244e79d63fbae6fb3212bc497f98d418 490 Gene3D G3DSA:3.40.640.10 128 482 4.6E-116 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3407 244e79d63fbae6fb3212bc497f98d418 490 Gene3D G3DSA:1.10.10.10 21 116 6.2E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3407 244e79d63fbae6fb3212bc497f98d418 490 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 87 1.1E-15 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_3407 244e79d63fbae6fb3212bc497f98d418 490 SMART SM00345 28 87 1.6E-13 T 12-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Alide_4444 10ad1fc649bef1f67d5f98cc74f741e6 85 ProDom PD028710 PLASMID KORC REPRESSOR TRANSCRIPTIONAL TRANSCRIPTION DNA-BINDING REGULATION KLCC 20 84 1.0E-30 T 12-10-2018 IPR020136 Transcriptional repressor KorC Alide_2016 f0e83248c0fd39976b894daf680535aa 307 SUPERFAMILY SSF53850 96 295 1.5E-28 T 12-10-2018 Alide_2016 f0e83248c0fd39976b894daf680535aa 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.8E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2016 f0e83248c0fd39976b894daf680535aa 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.8E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2016 f0e83248c0fd39976b894daf680535aa 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.8E-5 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2016 f0e83248c0fd39976b894daf680535aa 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 2.1E-11 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_2016 f0e83248c0fd39976b894daf680535aa 307 Gene3D G3DSA:3.40.190.290 96 298 1.6E-24 T 12-10-2018 Alide_2016 f0e83248c0fd39976b894daf680535aa 307 Gene3D G3DSA:1.10.10.10 1 86 2.1E-13 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2016 f0e83248c0fd39976b894daf680535aa 307 Pfam PF03466 LysR substrate binding domain 95 292 8.6E-29 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_2016 f0e83248c0fd39976b894daf680535aa 307 SUPERFAMILY SSF46785 3 85 5.6E-15 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2369 c5d2438e727602b678c4b9aa83fa16a7 275 Gene3D G3DSA:3.40.50.970 1 274 4.2E-83 T 12-10-2018 Alide_2369 c5d2438e727602b678c4b9aa83fa16a7 275 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 13 254 2.4E-38 T 12-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Alide_2369 c5d2438e727602b678c4b9aa83fa16a7 275 SUPERFAMILY SSF52518 4 272 5.44E-76 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_2312 f9e364e51166e8121c9997deac3ef356 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 12-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Alide_2312 f9e364e51166e8121c9997deac3ef356 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 251 3.6E-59 T 12-10-2018 Alide_2312 f9e364e51166e8121c9997deac3ef356 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 193 0.0036 T 12-10-2018 Alide_2312 f9e364e51166e8121c9997deac3ef356 253 SUPERFAMILY SSF51735 8 252 1.7E-79 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2312 f9e364e51166e8121c9997deac3ef356 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 4.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2312 f9e364e51166e8121c9997deac3ef356 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 4.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2312 f9e364e51166e8121c9997deac3ef356 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 4.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2312 f9e364e51166e8121c9997deac3ef356 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 4.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2312 f9e364e51166e8121c9997deac3ef356 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 4.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2312 f9e364e51166e8121c9997deac3ef356 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 4.8E-39 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2312 f9e364e51166e8121c9997deac3ef356 253 Gene3D G3DSA:3.40.50.720 3 253 4.3E-80 T 12-10-2018 Alide_2312 f9e364e51166e8121c9997deac3ef356 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 2.7E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2312 f9e364e51166e8121c9997deac3ef356 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 2.7E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_2312 f9e364e51166e8121c9997deac3ef356 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 2.7E-10 T 12-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Alide_0510 b2d69de4270b460b90be1c60cd3896eb 233 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 18 169 3.3E-36 T 12-10-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 Alide_0510 b2d69de4270b460b90be1c60cd3896eb 233 Gene3D G3DSA:1.10.3480.10 3 185 8.6E-11 T 12-10-2018 Alide_0510 b2d69de4270b460b90be1c60cd3896eb 233 Pfam PF02613 Nitrate reductase delta subunit 51 166 4.2E-11 T 12-10-2018 IPR020945 DMSO/Nitrate reductase chaperone Alide_0510 b2d69de4270b460b90be1c60cd3896eb 233 SUPERFAMILY SSF89155 10 172 1.7E-32 T 12-10-2018 IPR036411 TorD-like superfamily Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 SUPERFAMILY SSF51905 4 375 1.26E-33 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 Gene3D G3DSA:3.50.50.60 128 322 1.3E-46 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 Gene3D G3DSA:3.50.50.60 6 123 2.1E-17 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 Pfam PF01494 FAD binding domain 124 324 7.1E-18 T 12-10-2018 IPR002938 FAD-binding domain GO:0071949 Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.8E-10 T 12-10-2018 Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 265 280 3.8E-10 T 12-10-2018 Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 296 3.8E-10 T 12-10-2018 Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 Gene3D G3DSA:3.30.9.50 159 247 1.3E-46 T 12-10-2018 Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 Gene3D G3DSA:3.30.9.50 76 96 2.1E-17 T 12-10-2018 Alide_3649 1957b03dbe964be1d0ecfea08160c434 376 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 279 292 - T 12-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 Alide_2679 de05d9311ff41c00e04d8ed8126f8252 345 SUPERFAMILY SSF161098 115 326 3.01E-18 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2679 de05d9311ff41c00e04d8ed8126f8252 345 Gene3D G3DSA:1.10.3720.10 108 335 9.0E-23 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2679 de05d9311ff41c00e04d8ed8126f8252 345 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 136 343 4.7E-36 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1128 971784e570f62387c6e757b6440aff70 473 Gene3D G3DSA:3.30.2290.10 21 255 8.3E-78 T 12-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal Alide_1128 971784e570f62387c6e757b6440aff70 473 SUPERFAMILY SSF111283 30 472 7.98E-117 T 12-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Alide_1128 971784e570f62387c6e757b6440aff70 473 Pfam PF01523 Putative modulator of DNA gyrase 55 346 1.8E-55 T 12-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Alide_3549 db1896f8ecf6f076d69c4f27f26512e8 451 SUPERFAMILY SSF52096 63 283 1.49E-24 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3549 db1896f8ecf6f076d69c4f27f26512e8 451 Pfam PF01343 Peptidase family S49 149 293 1.8E-33 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Alide_3549 db1896f8ecf6f076d69c4f27f26512e8 451 Gene3D G3DSA:3.90.226.10 79 289 2.2E-42 T 12-10-2018 Alide_3549 db1896f8ecf6f076d69c4f27f26512e8 451 Gene3D G3DSA:3.40.1750.20 187 253 2.2E-42 T 12-10-2018 Alide_1185 6db44a85749ca7f25fbb49f738d11585 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 6 54 13.612 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1185 6db44a85749ca7f25fbb49f738d11585 56 ProSitePatterns PS00582 Ribosomal protein L33 signature. 22 41 - T 12-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Alide_1185 6db44a85749ca7f25fbb49f738d11585 56 SUPERFAMILY SSF57829 3 54 5.68E-18 T 12-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Alide_1185 6db44a85749ca7f25fbb49f738d11585 56 Gene3D G3DSA:2.20.28.120 1 56 3.8E-26 T 12-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1185 6db44a85749ca7f25fbb49f738d11585 56 Pfam PF00471 Ribosomal protein L33 8 54 5.6E-16 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_1185 6db44a85749ca7f25fbb49f738d11585 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 56 6.3E-24 T 12-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_0041 b4b2c458bc84bc24872448f4e8b34d31 413 Pfam PF02321 Outer membrane efflux protein 238 402 3.9E-16 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_0041 b4b2c458bc84bc24872448f4e8b34d31 413 Pfam PF02321 Outer membrane efflux protein 24 207 1.6E-8 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_0041 b4b2c458bc84bc24872448f4e8b34d31 413 SUPERFAMILY SSF56954 6 403 1.7E-49 T 12-10-2018 Alide_0041 b4b2c458bc84bc24872448f4e8b34d31 413 Gene3D G3DSA:1.20.1600.10 3 405 1.4E-41 T 12-10-2018 Alide_0589 12e102d9ca7b84a14b3f868db6c0c2df 215 SMART SM00855 6 161 2.3E-21 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_0589 12e102d9ca7b84a14b3f868db6c0c2df 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 201 3.6E-62 T 12-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Alide_0589 12e102d9ca7b84a14b3f868db6c0c2df 215 Gene3D G3DSA:3.40.50.1240 4 214 8.9E-61 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_0589 12e102d9ca7b84a14b3f868db6c0c2df 215 SUPERFAMILY SSF53254 5 208 1.7E-56 T 12-10-2018 IPR029033 Histidine phosphatase superfamily Alide_0589 12e102d9ca7b84a14b3f868db6c0c2df 215 PIRSF PIRSF000709 1 172 2.4E-8 T 12-10-2018 Alide_1079 dc423efcd670be84cf188622ad8b9dd2 353 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 115 1.5E-16 T 12-10-2018 IPR000014 PAS domain Alide_1079 dc423efcd670be84cf188622ad8b9dd2 353 SUPERFAMILY SSF55785 20 114 8.38E-28 T 12-10-2018 IPR035965 PAS domain superfamily Alide_1079 dc423efcd670be84cf188622ad8b9dd2 353 Gene3D G3DSA:3.30.450.20 11 147 8.9E-31 T 12-10-2018 Alide_1079 dc423efcd670be84cf188622ad8b9dd2 353 Pfam PF08447 PAS fold 31 105 6.0E-16 T 12-10-2018 IPR013655 PAS fold-3 GO:0005515 Alide_0421 d0aa978f51da4160debe45c85039bcb0 168 SUPERFAMILY SSF52833 1 164 9.13E-33 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0421 d0aa978f51da4160debe45c85039bcb0 168 Pfam PF08534 Redoxin 3 163 2.6E-35 T 12-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Alide_0421 d0aa978f51da4160debe45c85039bcb0 168 Gene3D G3DSA:3.40.30.10 1 167 4.3E-59 T 12-10-2018 Alide_4393 99eb7f35aa002f0f6f12ca014498e5fa 116 SMART SM00360 4 77 1.2E-27 T 12-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Alide_4393 99eb7f35aa002f0f6f12ca014498e5fa 116 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 74 1.6E-22 T 12-10-2018 IPR000504 RNA recognition motif domain GO:0003676 Alide_4393 99eb7f35aa002f0f6f12ca014498e5fa 116 SUPERFAMILY SSF54928 3 112 1.48E-35 T 12-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 Alide_4393 99eb7f35aa002f0f6f12ca014498e5fa 116 Gene3D G3DSA:3.30.70.330 1 115 6.2E-31 T 12-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Alide_3824 6fd61bc26f853b395a0fcfead6c997e2 225 Pfam PF07302 AroM protein 5 224 2.2E-57 T 12-10-2018 IPR010843 Uncharacterised protein family AroM Alide_3824 6fd61bc26f853b395a0fcfead6c997e2 225 ProDom PD037589 AROM ARO OPERON REGULATED BY AROR BIOSYNTHESIS TRANSCRIPTION AMINO AROMATIC 4 223 8.0E-21 T 12-10-2018 IPR010843 Uncharacterised protein family AroM Alide_2065 a89fc3d4083627dffdcf181c6b2bc578 168 Gene3D G3DSA:1.10.260.40 4 72 2.1E-10 T 12-10-2018 Alide_2065 a89fc3d4083627dffdcf181c6b2bc578 168 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 8 69 2.5E-6 T 12-10-2018 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 Alide_0219 0ac0ebf7335998d70853c00c24292c31 667 SUPERFAMILY SSF52540 106 555 3.72E-46 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0219 0ac0ebf7335998d70853c00c24292c31 667 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 112 558 6.4E-102 T 12-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 Alide_0219 0ac0ebf7335998d70853c00c24292c31 667 Gene3D G3DSA:3.40.50.300 326 556 1.7E-49 T 12-10-2018 Alide_2661 c8c70d96fefa1329a7fd2e0a36428d99 120 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 36 114 3.5E-33 T 12-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 Alide_2661 c8c70d96fefa1329a7fd2e0a36428d99 120 SUPERFAMILY SSF54736 34 118 7.32E-32 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Alide_2661 c8c70d96fefa1329a7fd2e0a36428d99 120 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 18 114 28.126 T 12-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS Alide_2661 c8c70d96fefa1329a7fd2e0a36428d99 120 Gene3D G3DSA:3.30.1390.10 19 119 7.7E-41 T 12-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Alide_2968 9c7a5f7e81a50687ad98c817dcdf8926 473 Pfam PF03972 MmgE/PrpD family 5 455 1.0E-81 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_2968 9c7a5f7e81a50687ad98c817dcdf8926 473 Gene3D G3DSA:1.10.4100.10 1 313 2.7E-66 T 12-10-2018 Alide_2968 9c7a5f7e81a50687ad98c817dcdf8926 473 SUPERFAMILY SSF103378 1 462 4.84E-91 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_3019 50ce49e2710335ef632759c93f689d08 273 Gene3D G3DSA:3.40.980.10 4 181 2.2E-43 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily Alide_3019 50ce49e2710335ef632759c93f689d08 273 SMART SM00852 6 184 1.3E-32 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_3019 50ce49e2710335ef632759c93f689d08 273 Pfam PF00994 Probable molybdopterin binding domain 7 177 7.9E-28 T 12-10-2018 IPR001453 MoaB/Mog domain Alide_3019 50ce49e2710335ef632759c93f689d08 273 SUPERFAMILY SSF53218 3 218 3.8E-35 T 12-10-2018 IPR036425 MoaB/Mog-like domain superfamily Alide_4309 aceeb9a108e3737d1610187792de8542 336 Gene3D G3DSA:3.40.190.150 39 326 5.4E-99 T 12-10-2018 Alide_4309 aceeb9a108e3737d1610187792de8542 336 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 58 331 1.5E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_4309 aceeb9a108e3737d1610187792de8542 336 SUPERFAMILY SSF53850 125 291 2.53E-5 T 12-10-2018 Alide_4309 aceeb9a108e3737d1610187792de8542 336 Gene3D G3DSA:3.40.190.10 136 262 5.4E-99 T 12-10-2018 Alide_4309 aceeb9a108e3737d1610187792de8542 336 PIRSF PIRSF017082 5 335 8.1E-72 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2564 c70cd62a87cccef877dc6697112dcda0 526 TIGRFAM TIGR03248 galactar-dH20: galactarate dehydratase 7 526 1.1E-271 T 12-10-2018 IPR017654 Galactarate dehydratase GarD-like GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497 Alide_2564 c70cd62a87cccef877dc6697112dcda0 526 Gene3D G3DSA:3.90.1210.30 7 84 1.2E-23 T 12-10-2018 Alide_2564 c70cd62a87cccef877dc6697112dcda0 526 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 112 524 4.2E-143 T 12-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 Alide_2564 c70cd62a87cccef877dc6697112dcda0 526 Pfam PF08666 SAF domain 15 84 9.7E-11 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Alide_2564 c70cd62a87cccef877dc6697112dcda0 526 SMART SM00858 15 85 4.7E-12 T 12-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Alide_4332 1de19d7d2e335cde884b18955c9a5330 159 Pfam PF10029 Predicted periplasmic protein (DUF2271) 25 152 4.5E-34 T 12-10-2018 IPR014469 Protein of unknown function DUF2271 Alide_3608 4bec07d67844e11d4c055a47677da239 179 Gene3D G3DSA:2.60.40.420 48 179 1.3E-27 T 12-10-2018 IPR008972 Cupredoxin Alide_3608 4bec07d67844e11d4c055a47677da239 179 SUPERFAMILY SSF49503 95 178 1.13E-20 T 12-10-2018 IPR008972 Cupredoxin Alide_4553 916ede03f2cc95121dea6f205e7dd420 311 Gene3D G3DSA:1.10.10.2830 129 222 5.9E-8 T 12-10-2018 Alide_4553 916ede03f2cc95121dea6f205e7dd420 311 SUPERFAMILY SSF110849 28 122 5.75E-5 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Alide_4553 916ede03f2cc95121dea6f205e7dd420 311 SUPERFAMILY SSF109709 131 208 8.24E-12 T 12-10-2018 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 Pfam PF00672 HAMP domain 207 256 4.0E-9 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 475 5.1E-55 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 166 2.4E-23 T 12-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain Alide_3730 d355b7323a312095377ae27ec16af2cd 564 SUPERFAMILY SSF58104 227 508 7.06E-76 T 12-10-2018 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 Gene3D G3DSA:1.10.287.950 206 509 3.3E-91 T 12-10-2018 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 SMART SM00283 260 507 4.0E-93 T 12-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 SMART SM00304 207 259 7.3E-11 T 12-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 387 416 5.3E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 435 464 5.3E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 281 310 5.3E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 358 385 5.3E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_3730 d355b7323a312095377ae27ec16af2cd 564 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 24 5.3E-60 T 12-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 Alide_4507 eabbf68070b66583e80928a698fc6591 96 Pfam PF01909 Nucleotidyltransferase domain 27 91 1.5E-6 T 12-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Alide_4507 eabbf68070b66583e80928a698fc6591 96 SUPERFAMILY SSF81301 3 96 6.95E-18 T 12-10-2018 Alide_4507 eabbf68070b66583e80928a698fc6591 96 Gene3D G3DSA:3.30.460.10 4 96 3.3E-19 T 12-10-2018 Alide_1924 7c02019c7d1662954b30df472e0c7a1e 268 Pfam PF12697 Alpha/beta hydrolase family 26 259 8.2E-19 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_1924 7c02019c7d1662954b30df472e0c7a1e 268 SUPERFAMILY SSF53474 2 267 1.49E-47 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1924 7c02019c7d1662954b30df472e0c7a1e 268 Gene3D G3DSA:3.40.50.1820 1 268 8.1E-47 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4278 0099fd02de8219f896202e7bc5f0b17e 293 SUPERFAMILY SSF103481 43 143 3.4E-16 T 12-10-2018 Alide_4278 0099fd02de8219f896202e7bc5f0b17e 293 Pfam PF00892 EamA-like transporter family 152 287 8.2E-16 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_4278 0099fd02de8219f896202e7bc5f0b17e 293 Pfam PF00892 EamA-like transporter family 9 140 6.4E-21 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_4278 0099fd02de8219f896202e7bc5f0b17e 293 SUPERFAMILY SSF103481 193 290 1.15E-10 T 12-10-2018 Alide_2766 02f39a9cecae7b4e95559a822cdcdf64 207 Pfam PF06080 Protein of unknown function (DUF938) 10 202 9.1E-68 T 12-10-2018 IPR010342 Protein of unknown function DUF938 Alide_2766 02f39a9cecae7b4e95559a822cdcdf64 207 SUPERFAMILY SSF53335 13 194 3.91E-26 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2766 02f39a9cecae7b4e95559a822cdcdf64 207 Gene3D G3DSA:3.40.50.150 8 203 1.1E-17 T 12-10-2018 Alide_0152 1ade5df12809c7cede08957463a99e82 311 Gene3D G3DSA:3.10.129.10 13 300 3.8E-83 T 12-10-2018 Alide_0152 1ade5df12809c7cede08957463a99e82 311 Pfam PF13452 N-terminal half of MaoC dehydratase 54 131 1.2E-9 T 12-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 Alide_0152 1ade5df12809c7cede08957463a99e82 311 SUPERFAMILY SSF54637 11 159 7.31E-36 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0152 1ade5df12809c7cede08957463a99e82 311 SUPERFAMILY SSF54637 168 287 3.41E-30 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0152 1ade5df12809c7cede08957463a99e82 311 Pfam PF01575 MaoC like domain 168 271 1.2E-26 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_4296 df75ccbf55492636c7391d6799a1d654 260 TIGRFAM TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase 4 257 1.2E-145 T 12-10-2018 IPR017623 2-ketocyclohexanecarboxyl-CoA hydrolase Alide_4296 df75ccbf55492636c7391d6799a1d654 260 Gene3D G3DSA:3.90.226.10 1 200 4.8E-70 T 12-10-2018 Alide_4296 df75ccbf55492636c7391d6799a1d654 260 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 1 260 44.304 T 12-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 Alide_4296 df75ccbf55492636c7391d6799a1d654 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 258 1.2E-72 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_4296 df75ccbf55492636c7391d6799a1d654 260 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 101 121 - T 12-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 Alide_4296 df75ccbf55492636c7391d6799a1d654 260 SUPERFAMILY SSF52096 2 258 4.54E-80 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_4296 df75ccbf55492636c7391d6799a1d654 260 Gene3D G3DSA:1.10.12.10 201 251 3.7E-22 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 Hamap MF_00109 Shikimate kinase [aroK]. 2 170 28.319 T 12-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 SUPERFAMILY SSF52540 5 165 5.28E-31 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 Pfam PF01202 Shikimate kinase 11 168 4.3E-47 T 12-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 Gene3D G3DSA:3.40.50.300 3 174 1.0E-54 T 12-10-2018 Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 PRINTS PR01100 Shikimate kinase family signature 76 85 6.2E-20 T 12-10-2018 Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 PRINTS PR01100 Shikimate kinase family signature 29 42 6.2E-20 T 12-10-2018 Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 PRINTS PR01100 Shikimate kinase family signature 5 20 6.2E-20 T 12-10-2018 Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 PRINTS PR01100 Shikimate kinase family signature 57 65 6.2E-20 T 12-10-2018 Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 PRINTS PR01100 Shikimate kinase family signature 98 115 6.2E-20 T 12-10-2018 Alide_0256 e9dfcb0dc0a8227a2630769e69576d2b 180 ProSitePatterns PS01128 Shikimate kinase signature. 58 84 - T 12-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Alide_4269 80bb784891aef8a31991840e168f0931 404 Pfam PF01476 LysM domain 68 114 1.1E-11 T 12-10-2018 IPR018392 LysM domain Alide_4269 80bb784891aef8a31991840e168f0931 404 Gene3D G3DSA:3.10.350.10 66 114 1.5E-14 T 12-10-2018 IPR036779 LysM domain superfamily Alide_4269 80bb784891aef8a31991840e168f0931 404 SMART SM00257 67 116 0.0067 T 12-10-2018 IPR018392 LysM domain Alide_4269 80bb784891aef8a31991840e168f0931 404 SUPERFAMILY SSF54106 66 115 6.41E-7 T 12-10-2018 Alide_0356 6f838b2a8b0ffe3acc5264c41e24ec40 483 Pfam PF00171 Aldehyde dehydrogenase family 24 476 3.9E-164 T 12-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Alide_0356 6f838b2a8b0ffe3acc5264c41e24ec40 483 Gene3D G3DSA:3.40.309.10 257 450 2.1E-168 T 12-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Alide_0356 6f838b2a8b0ffe3acc5264c41e24ec40 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 12-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 Alide_0356 6f838b2a8b0ffe3acc5264c41e24ec40 483 SUPERFAMILY SSF53720 3 481 1.44E-152 T 12-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Alide_0356 6f838b2a8b0ffe3acc5264c41e24ec40 483 Gene3D G3DSA:3.40.605.10 25 476 2.1E-168 T 12-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Alide_1496 bb0c5df3706707a5d22e82127c625480 215 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 96 212 4.5E-32 T 12-10-2018 IPR011969 Clan AA aspartic peptidase, C-terminal Alide_1496 bb0c5df3706707a5d22e82127c625480 215 Gene3D G3DSA:2.40.70.10 90 214 1.7E-31 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily Alide_1496 bb0c5df3706707a5d22e82127c625480 215 Pfam PF13975 gag-polyprotein putative aspartyl protease 110 198 3.3E-23 T 12-10-2018 Alide_1496 bb0c5df3706707a5d22e82127c625480 215 SUPERFAMILY SSF50630 99 203 1.29E-17 T 12-10-2018 IPR021109 Aspartic peptidase domain superfamily Alide_0691 7e14eac222efc444c887ad5cabc07f0b 432 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 427 1.2E-100 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_0691 7e14eac222efc444c887ad5cabc07f0b 432 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 422 1.7E-93 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Alide_0691 7e14eac222efc444c887ad5cabc07f0b 432 PIRSF PIRSF006066 1 432 1.5E-117 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_1208 564d4378cb4dfe004423fb2b809bf7f6 329 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 329 64.772 T 12-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Alide_1208 564d4378cb4dfe004423fb2b809bf7f6 329 Pfam PF03186 CobD/Cbib protein 37 270 5.2E-26 T 12-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Alide_1908 91b4a759246ed23f946fbff1abc6ed46 127 Gene3D G3DSA:3.10.180.10 6 126 1.3E-35 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_1908 91b4a759246ed23f946fbff1abc6ed46 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 121 3.3E-8 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Alide_1908 91b4a759246ed23f946fbff1abc6ed46 127 SUPERFAMILY SSF54593 1 121 4.26E-25 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_1859 5242a8bc7f7b2eaaa84899ffd98d5dcf 223 Pfam PF02586 SOS response associated peptidase (SRAP) 1 216 1.3E-30 T 12-10-2018 IPR003738 SOS response associated peptidase (SRAP) Alide_1859 5242a8bc7f7b2eaaa84899ffd98d5dcf 223 Gene3D G3DSA:3.90.1680.10 1 221 8.4E-66 T 12-10-2018 IPR036590 SOS response associated peptidase-like Alide_1859 5242a8bc7f7b2eaaa84899ffd98d5dcf 223 SUPERFAMILY SSF143081 2 215 4.32E-52 T 12-10-2018 IPR036590 SOS response associated peptidase-like Alide_0077 2ee5a8e92be99b176dcad9309ace37d5 191 Pfam PF01923 Cobalamin adenosyltransferase 8 165 2.4E-53 T 12-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Alide_0077 2ee5a8e92be99b176dcad9309ace37d5 191 Gene3D G3DSA:1.20.1200.10 17 183 1.2E-58 T 12-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Alide_0077 2ee5a8e92be99b176dcad9309ace37d5 191 SUPERFAMILY SSF89028 7 178 1.0E-55 T 12-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Alide_0077 2ee5a8e92be99b176dcad9309ace37d5 191 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 23 177 2.0E-47 T 12-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Alide_0077 2ee5a8e92be99b176dcad9309ace37d5 191 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 10 178 4.8E-55 T 12-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Alide_2779 2dd5d8c366398e706d6c79b3059bc69f 529 Pfam PF00221 Aromatic amino acid lyase 20 462 2.3E-180 T 12-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Alide_2779 2dd5d8c366398e706d6c79b3059bc69f 529 Gene3D G3DSA:1.10.275.10 11 205 1.0E-66 T 12-10-2018 IPR024083 Fumarase/histidase, N-terminal Alide_2779 2dd5d8c366398e706d6c79b3059bc69f 529 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 147 162 - T 12-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 Alide_2779 2dd5d8c366398e706d6c79b3059bc69f 529 SUPERFAMILY SSF48557 9 516 3.06E-183 T 12-10-2018 IPR008948 L-Aspartase-like GO:0003824 Alide_2779 2dd5d8c366398e706d6c79b3059bc69f 529 Gene3D G3DSA:1.20.200.10 206 514 2.9E-112 T 12-10-2018 Alide_2779 2dd5d8c366398e706d6c79b3059bc69f 529 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 13 511 1.1E-197 T 12-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_2779 2dd5d8c366398e706d6c79b3059bc69f 529 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 11 522 42.837 T 12-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Alide_3231 e4dbc1d93da4730aef4d9517ed894e3b 123 SUPERFAMILY SSF46458 11 118 2.26E-19 T 12-10-2018 IPR009050 Globin-like superfamily Alide_3231 e4dbc1d93da4730aef4d9517ed894e3b 123 Gene3D G3DSA:1.10.490.10 6 122 8.6E-33 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 Alide_2525 237e41ddf187280a6b6961d4e19904d3 229 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 21 221 2.2E-40 T 12-10-2018 IPR006214 Bax inhibitor 1-related Alide_4001 9ecb2c23638d2b15ddf8de3176e96a03 264 TIGRFAM TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family 13 224 3.0E-88 T 12-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Alide_4001 9ecb2c23638d2b15ddf8de3176e96a03 264 Pfam PF08900 Domain of unknown function (DUF1845) 12 222 1.0E-78 T 12-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 Alide_3189 e4f733066f20083d34dabc32082963e5 183 Pfam PF02620 Uncharacterized ACR, COG1399 68 176 2.0E-21 T 12-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD Alide_1435 db444db0040ea1df2ebc2491246e66ca 182 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 17 157 2.0E-33 T 12-10-2018 IPR006433 Prohead protease Alide_1435 db444db0040ea1df2ebc2491246e66ca 182 Pfam PF04586 Caudovirus prohead serine protease 7 160 2.1E-42 T 12-10-2018 IPR006433 Prohead protease Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 60 84 1.9E-14 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 86 106 1.9E-14 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 426 448 1.9E-14 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 272 294 1.9E-14 T 12-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 4 664 5.0E-242 T 12-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 Pfam PF00361 Proton-conducting membrane transporter 135 413 1.5E-81 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 1.8E-64 T 12-10-2018 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 427 446 1.8E-64 T 12-10-2018 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 232 253 1.8E-64 T 12-10-2018 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 159 180 1.8E-64 T 12-10-2018 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 322 334 1.8E-64 T 12-10-2018 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 254 280 1.8E-64 T 12-10-2018 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 112 132 1.8E-64 T 12-10-2018 Alide_1057 bceed1047b1f8eb2b50acf106132defa 669 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 123 9.0E-26 T 12-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_3614 d4b42227bad8a25797ac0e056ab4d6ee 482 Gene3D G3DSA:1.20.210.10 38 481 1.6E-48 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3614 d4b42227bad8a25797ac0e056ab4d6ee 482 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 41 433 1.9E-17 T 12-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3614 d4b42227bad8a25797ac0e056ab4d6ee 482 SUPERFAMILY SSF81442 39 472 1.24E-28 T 12-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2741 3df6fa613939d73e72fb0d72a49aa7a3 227 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 4.5E-106 T 12-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 Alide_2741 3df6fa613939d73e72fb0d72a49aa7a3 227 Pfam PF00072 Response regulator receiver domain 3 113 1.8E-28 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2741 3df6fa613939d73e72fb0d72a49aa7a3 227 SUPERFAMILY SSF52172 2 123 4.13E-40 T 12-10-2018 IPR011006 CheY-like superfamily Alide_2741 3df6fa613939d73e72fb0d72a49aa7a3 227 SMART SM00862 146 221 1.3E-24 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_2741 3df6fa613939d73e72fb0d72a49aa7a3 227 Gene3D G3DSA:3.40.50.2300 1 121 1.1E-39 T 12-10-2018 Alide_2741 3df6fa613939d73e72fb0d72a49aa7a3 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 5.4E-25 T 12-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Alide_2741 3df6fa613939d73e72fb0d72a49aa7a3 227 SMART SM00448 1 112 1.3E-42 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_2741 3df6fa613939d73e72fb0d72a49aa7a3 227 Gene3D G3DSA:1.10.10.10 124 227 1.2E-31 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2741 3df6fa613939d73e72fb0d72a49aa7a3 227 SUPERFAMILY SSF46894 122 222 5.67E-29 T 12-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Alide_4636 7fb6d8cfaf73a1067af5b4ad73061ba8 94 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 2 85 7.5E-13 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Alide_4636 7fb6d8cfaf73a1067af5b4ad73061ba8 94 Gene3D G3DSA:3.30.2310.20 1 90 8.1E-28 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Alide_4636 7fb6d8cfaf73a1067af5b4ad73061ba8 94 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 89 1.9E-18 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Alide_4605 7fb6d8cfaf73a1067af5b4ad73061ba8 94 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 2 85 7.5E-13 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Alide_4605 7fb6d8cfaf73a1067af5b4ad73061ba8 94 Gene3D G3DSA:3.30.2310.20 1 90 8.1E-28 T 12-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Alide_4605 7fb6d8cfaf73a1067af5b4ad73061ba8 94 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 89 1.9E-18 T 12-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Alide_3870 304c92a02f801eaa5ec808d1374063d3 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 300 321 1.3E-33 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Alide_3870 304c92a02f801eaa5ec808d1374063d3 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 226 243 1.3E-33 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Alide_3870 304c92a02f801eaa5ec808d1374063d3 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 206 224 1.3E-33 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Alide_3870 304c92a02f801eaa5ec808d1374063d3 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 270 285 1.3E-33 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Alide_3870 304c92a02f801eaa5ec808d1374063d3 386 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 8 30 1.3E-33 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Alide_3870 304c92a02f801eaa5ec808d1374063d3 386 SUPERFAMILY SSF160544 242 349 1.44E-38 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Alide_3870 304c92a02f801eaa5ec808d1374063d3 386 Gene3D G3DSA:3.40.1690.10 216 354 1.4E-54 T 12-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal Alide_3870 304c92a02f801eaa5ec808d1374063d3 386 Pfam PF01312 FlhB HrpN YscU SpaS Family 5 345 7.5E-109 T 12-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Alide_4483 c793a8461265bbfefc0ea41801c965f4 572 PRINTS PR01228 Eggshell protein signature 223 239 1.4E-8 T 12-10-2018 Alide_4483 c793a8461265bbfefc0ea41801c965f4 572 PRINTS PR01228 Eggshell protein signature 410 428 1.4E-8 T 12-10-2018 Alide_4483 c793a8461265bbfefc0ea41801c965f4 572 PRINTS PR01228 Eggshell protein signature 351 366 1.4E-8 T 12-10-2018 Alide_4483 c793a8461265bbfefc0ea41801c965f4 572 PRINTS PR01228 Eggshell protein signature 381 391 1.4E-8 T 12-10-2018 Alide_4483 c793a8461265bbfefc0ea41801c965f4 572 TIGRFAM TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL 30 329 3.5E-84 T 12-10-2018 IPR014150 Conjugal transfer, TrbL Alide_4483 c793a8461265bbfefc0ea41801c965f4 572 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 65 272 2.4E-39 T 12-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 Alide_4433 de28f182a4d4783bbb96afea86401d5a 146 Pfam PF11657 Transcriptional activator TraM 5 144 9.4E-69 T 12-10-2018 IPR028140 Protein TraM GO:0009372 Alide_4433 de28f182a4d4783bbb96afea86401d5a 146 ProDom PD033334 TRAM PLASMID TRANSFER CONJUGATION ESSENTIAL SYSTEM SEQUENCING DIRECT DNA CONJUGAL 5 119 2.0E-51 T 12-10-2018 Alide_4461 7b1f12a4b4fdd575f411f179d8aadc49 389 Pfam PF04326 Putative DNA-binding domain 23 134 6.6E-16 T 12-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 Alide_4461 7b1f12a4b4fdd575f411f179d8aadc49 389 Gene3D G3DSA:3.30.950.30 8 138 3.6E-21 T 12-10-2018 IPR038461 Schlafen, AAA domain superfamily Alide_1846 32c9ea3f60e59644483d9faed4cc235c 86 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 1.4E-23 T 12-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 Alide_1846 32c9ea3f60e59644483d9faed4cc235c 86 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 6.0E-32 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Alide_1846 32c9ea3f60e59644483d9faed4cc235c 86 SUPERFAMILY SSF50249 1 71 6.57E-26 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_1846 32c9ea3f60e59644483d9faed4cc235c 86 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 75 26.46 T 12-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Alide_1846 32c9ea3f60e59644483d9faed4cc235c 86 Gene3D G3DSA:2.40.50.140 1 71 5.3E-32 T 12-10-2018 Alide_2765 2a43db98ce4bdf483b68493579063c80 267 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 17 242 2.1E-59 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Alide_2765 2a43db98ce4bdf483b68493579063c80 267 Gene3D G3DSA:3.20.20.60 2 258 4.2E-89 T 12-10-2018 Alide_2765 2a43db98ce4bdf483b68493579063c80 267 SUPERFAMILY SSF51621 2 251 4.71E-80 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_2765 2a43db98ce4bdf483b68493579063c80 267 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 5 249 2.3E-111 T 12-10-2018 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 Alide_4349 605dc47c1a1ed980fb5686357ed9abeb 286 Gene3D G3DSA:3.30.450.40 112 281 4.9E-31 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_4349 605dc47c1a1ed980fb5686357ed9abeb 286 Pfam PF01614 Bacterial transcriptional regulator 162 280 9.3E-12 T 12-10-2018 IPR014757 Transcription regulator IclR, C-terminal Alide_4349 605dc47c1a1ed980fb5686357ed9abeb 286 SUPERFAMILY SSF55781 106 284 2.42E-36 T 12-10-2018 Alide_4349 605dc47c1a1ed980fb5686357ed9abeb 286 Pfam PF09339 IclR helix-turn-helix domain 42 91 1.3E-12 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_4349 605dc47c1a1ed980fb5686357ed9abeb 286 SMART SM00346 39 129 2.3E-18 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_4349 605dc47c1a1ed980fb5686357ed9abeb 286 Gene3D G3DSA:1.10.10.10 29 107 7.0E-17 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4349 605dc47c1a1ed980fb5686357ed9abeb 286 SUPERFAMILY SSF46785 42 112 8.61E-10 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3150 11749e6fa9e99c1dfd35161e96594bd9 182 Pfam PF02325 YGGT family 15 81 1.2E-16 T 12-10-2018 IPR003425 CCB3/YggT GO:0016020 Alide_3150 11749e6fa9e99c1dfd35161e96594bd9 182 Pfam PF02325 YGGT family 107 173 1.1E-17 T 12-10-2018 IPR003425 CCB3/YggT GO:0016020 Alide_3513 8fb86f4543a5c4201127952a4cd43051 214 Gene3D G3DSA:3.40.1080.10 5 213 2.2E-79 T 12-10-2018 Alide_3513 8fb86f4543a5c4201127952a4cd43051 214 Pfam PF01144 Coenzyme A transferase 11 199 2.6E-35 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Alide_3513 8fb86f4543a5c4201127952a4cd43051 214 SUPERFAMILY SSF100950 10 212 3.3E-59 T 12-10-2018 IPR037171 NagB/RpiA transferase-like Alide_3513 8fb86f4543a5c4201127952a4cd43051 214 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 48 56 - T 12-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 Alide_3513 8fb86f4543a5c4201127952a4cd43051 214 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 8 207 3.8E-84 T 12-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 Alide_3513 8fb86f4543a5c4201127952a4cd43051 214 SMART SM00882 10 207 4.7E-62 T 12-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Alide_4147 c4b344400a14e2e693acd03e9a569adc 242 Gene3D G3DSA:3.30.420.40 3 220 4.1E-56 T 12-10-2018 Alide_4147 c4b344400a14e2e693acd03e9a569adc 242 Gene3D G3DSA:3.30.420.40 98 189 4.1E-56 T 12-10-2018 Alide_4147 c4b344400a14e2e693acd03e9a569adc 242 SUPERFAMILY SSF53067 3 109 1.94E-21 T 12-10-2018 Alide_4147 c4b344400a14e2e693acd03e9a569adc 242 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 220 7.0E-52 T 12-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 Alide_4147 c4b344400a14e2e693acd03e9a569adc 242 SUPERFAMILY SSF53067 113 218 8.67E-14 T 12-10-2018 Alide_4147 c4b344400a14e2e693acd03e9a569adc 242 Pfam PF00814 Glycoprotease family 35 129 3.2E-20 T 12-10-2018 IPR000905 Gcp-like domain Alide_0194 d63a4cb7c7a76fee1fe1813dce038123 326 Gene3D G3DSA:3.40.190.10 128 251 1.5E-107 T 12-10-2018 Alide_0194 d63a4cb7c7a76fee1fe1813dce038123 326 SUPERFAMILY SSF53850 129 294 2.99E-7 T 12-10-2018 Alide_0194 d63a4cb7c7a76fee1fe1813dce038123 326 Gene3D G3DSA:3.40.190.150 31 316 1.5E-107 T 12-10-2018 Alide_0194 d63a4cb7c7a76fee1fe1813dce038123 326 PIRSF PIRSF017082 1 326 1.9E-74 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0194 d63a4cb7c7a76fee1fe1813dce038123 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 322 2.2E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3087 af20663687ef359f8187087e429799b1 405 SUPERFAMILY SSF46626 308 402 3.06E-5 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_3087 af20663687ef359f8187087e429799b1 405 Pfam PF06181 Urate oxidase N-terminal 4 301 6.5E-131 T 12-10-2018 IPR010389 Urate oxidase N-terminal Alide_3087 af20663687ef359f8187087e429799b1 405 Gene3D G3DSA:1.10.760.10 306 398 4.4E-5 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_1731 7b3d81ecbe251fb4867e4ae3275b8ee3 405 Gene3D G3DSA:3.90.1150.10 31 395 2.1E-129 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_1731 7b3d81ecbe251fb4867e4ae3275b8ee3 405 SUPERFAMILY SSF53383 8 401 8.57E-110 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_1731 7b3d81ecbe251fb4867e4ae3275b8ee3 405 Pfam PF00155 Aminotransferase class I and II 36 396 2.0E-75 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_1731 7b3d81ecbe251fb4867e4ae3275b8ee3 405 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 240 253 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Alide_1731 7b3d81ecbe251fb4867e4ae3275b8ee3 405 Gene3D G3DSA:3.40.640.10 67 290 2.1E-129 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_1338 f17abf3d1582686a6108f9a6d09c5f6b 275 Gene3D G3DSA:3.40.190.10 110 221 6.4E-91 T 12-10-2018 Alide_1338 f17abf3d1582686a6108f9a6d09c5f6b 275 SUPERFAMILY SSF53850 34 260 2.44E-35 T 12-10-2018 Alide_1338 f17abf3d1582686a6108f9a6d09c5f6b 275 Pfam PF12849 PBP superfamily domain 29 250 4.5E-29 T 12-10-2018 IPR024370 PBP domain Alide_1338 f17abf3d1582686a6108f9a6d09c5f6b 275 Gene3D G3DSA:3.40.190.10 35 258 6.4E-91 T 12-10-2018 Alide_2304 d3155e7e7d4f6a9052d63caf502fb85e 346 Gene3D G3DSA:1.10.287.470 86 157 6.0E-60 T 12-10-2018 Alide_2304 d3155e7e7d4f6a9052d63caf502fb85e 346 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 54 257 5.0E-19 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_2304 d3155e7e7d4f6a9052d63caf502fb85e 346 Gene3D G3DSA:2.40.50.100 52 192 6.0E-60 T 12-10-2018 Alide_2304 d3155e7e7d4f6a9052d63caf502fb85e 346 Gene3D G3DSA:2.40.30.170 40 274 6.0E-60 T 12-10-2018 Alide_2304 d3155e7e7d4f6a9052d63caf502fb85e 346 Gene3D G3DSA:2.40.420.20 38 335 6.0E-60 T 12-10-2018 Alide_2304 d3155e7e7d4f6a9052d63caf502fb85e 346 SUPERFAMILY SSF111369 45 272 1.7E-21 T 12-10-2018 Alide_2304 d3155e7e7d4f6a9052d63caf502fb85e 346 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 341 1.1E-52 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_1221 fc777b155486e00ab8307044a339fb8b 243 Gene3D G3DSA:1.10.10.10 162 235 3.6E-15 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1221 fc777b155486e00ab8307044a339fb8b 243 SMART SM00100 28 147 1.0E-19 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_1221 fc777b155486e00ab8307044a339fb8b 243 SUPERFAMILY SSF51206 23 160 4.58E-31 T 12-10-2018 IPR018490 Cyclic nucleotide-binding-like Alide_1221 fc777b155486e00ab8307044a339fb8b 243 SMART SM00419 180 228 1.1E-5 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_1221 fc777b155486e00ab8307044a339fb8b 243 Gene3D G3DSA:2.60.120.10 15 161 2.8E-38 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1221 fc777b155486e00ab8307044a339fb8b 243 Pfam PF00027 Cyclic nucleotide-binding domain 49 135 2.2E-16 T 12-10-2018 IPR000595 Cyclic nucleotide-binding domain Alide_1221 fc777b155486e00ab8307044a339fb8b 243 Pfam PF13545 Crp-like helix-turn-helix domain 167 235 3.3E-15 T 12-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Alide_1221 fc777b155486e00ab8307044a339fb8b 243 SUPERFAMILY SSF46785 165 236 1.36E-12 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1760 761f83a7b4fca162d45c16629e8e2dac 189 Gene3D G3DSA:1.10.1740.10 2 78 2.7E-6 T 12-10-2018 Alide_1760 761f83a7b4fca162d45c16629e8e2dac 189 Pfam PF08281 Sigma-70, region 4 126 178 2.8E-16 T 12-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Alide_1760 761f83a7b4fca162d45c16629e8e2dac 189 SUPERFAMILY SSF88659 119 182 5.61E-16 T 12-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Alide_1760 761f83a7b4fca162d45c16629e8e2dac 189 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 182 3.4E-18 T 12-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Alide_1760 761f83a7b4fca162d45c16629e8e2dac 189 SUPERFAMILY SSF88946 19 84 2.9E-7 T 12-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Alide_1760 761f83a7b4fca162d45c16629e8e2dac 189 Gene3D G3DSA:1.10.10.10 101 188 4.1E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0687 d6e8d1f6d3e248609fccad759574905c 325 SUPERFAMILY SSF51412 13 311 4.73E-58 T 12-10-2018 Alide_0687 d6e8d1f6d3e248609fccad759574905c 325 Pfam PF03060 Nitronate monooxygenase 84 312 5.2E-24 T 12-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Alide_0687 d6e8d1f6d3e248609fccad759574905c 325 Gene3D G3DSA:3.20.20.70 11 322 1.8E-68 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3583 5d0d7f966ef570d1f89928699f207daa 209 SUPERFAMILY SSF109604 3 193 1.7E-28 T 12-10-2018 Alide_3583 5d0d7f966ef570d1f89928699f207daa 209 Gene3D G3DSA:1.10.3210.10 1 202 8.4E-50 T 12-10-2018 Alide_0636 d9ba1e217c7170d96c25ccfacc993fae 267 Pfam PF01863 Protein of unknown function DUF45 50 260 1.1E-50 T 12-10-2018 IPR002725 Protein of unknown function DUF45 Alide_0636 d9ba1e217c7170d96c25ccfacc993fae 267 Gene3D G3DSA:3.30.2010.10 170 260 4.2E-16 T 12-10-2018 Alide_4101 b7e00d994609b7c504e05e34df6af820 447 Gene3D G3DSA:3.40.50.11280 81 220 8.8E-48 T 12-10-2018 Alide_4101 b7e00d994609b7c504e05e34df6af820 447 TIGRFAM TIGR02049 gshA_ferroox: glutamate--cysteine ligase 33 439 1.3E-181 T 12-10-2018 IPR011718 Glutamate--cysteine ligase GshA Alide_4101 b7e00d994609b7c504e05e34df6af820 447 Pfam PF08886 Glutamate-cysteine ligase 33 436 2.9E-197 T 12-10-2018 IPR011718 Glutamate--cysteine ligase GshA Alide_0801 33dbecb751cc8613caa6d73cb4e0be60 148 Pfam PF11356 Type II secretion system protein C 65 121 5.1E-8 T 12-10-2018 IPR024961 Type II secretion system protein C, N-terminal Alide_2825 b0b696a9e8b0bfcde35a496e212d862f 80 Pfam PF10038 Protein of unknown function (DUF2274) 5 70 5.0E-23 T 12-10-2018 IPR018733 Protein of unknown function DUF2274 Alide_0578 a6ba8fd6771c538761469d7129748cf7 316 Gene3D G3DSA:3.40.50.300 100 306 1.4E-71 T 12-10-2018 Alide_0578 a6ba8fd6771c538761469d7129748cf7 316 Pfam PF02562 PhoH-like protein 103 306 4.8E-92 T 12-10-2018 IPR003714 PhoH-like protein GO:0005524 Alide_0578 a6ba8fd6771c538761469d7129748cf7 316 SUPERFAMILY SSF52540 102 278 1.36E-39 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0009 bcb386de27d6931b525c6e4c5968b153 590 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 7 347 1.6E-112 T 12-10-2018 IPR010839 Acyclic terpene utilisation Alide_1502 805928ca1973eadd960b1226d7ca2b4e 714 Pfam PF01968 Hydantoinase/oxoprolinase 223 508 5.5E-77 T 12-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Alide_1502 805928ca1973eadd960b1226d7ca2b4e 714 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 10 198 1.3E-38 T 12-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Alide_1502 805928ca1973eadd960b1226d7ca2b4e 714 SUPERFAMILY SSF53067 9 325 1.15E-7 T 12-10-2018 Alide_0519 6b02f76e50f4858060395c6fe821367f 329 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 83 323 1.9E-41 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Alide_0519 6b02f76e50f4858060395c6fe821367f 329 Gene3D G3DSA:3.90.850.10 1 328 2.8E-148 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_0519 6b02f76e50f4858060395c6fe821367f 329 SUPERFAMILY SSF56529 77 325 2.49E-60 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_3384 40c6a95925988e805001794f73b9daa9 70 TIGRFAM TIGR02811 formate_TAT: formate dehydrogenase region TAT target 3 68 2.7E-14 T 12-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing Alide_3384 40c6a95925988e805001794f73b9daa9 70 PIRSF PIRSF036704 1 70 8.3E-14 T 12-10-2018 IPR014177 Putative formate dehydrogenase, TAT signal-containing Alide_4184 eeee1e53ded7702cca8a287d5c2233af 453 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 9 364 1.2E-121 T 12-10-2018 IPR010839 Acyclic terpene utilisation Alide_3740 d1d8f5af3843e40e817de37070c15f35 149 Gene3D G3DSA:1.20.1290.10 6 135 8.0E-30 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_3740 d1d8f5af3843e40e817de37070c15f35 149 SUPERFAMILY SSF69118 4 145 2.45E-24 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_3740 d1d8f5af3843e40e817de37070c15f35 149 Pfam PF02627 Carboxymuconolactone decarboxylase family 38 127 7.0E-12 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_0778 4f50b556630b07b67ec34f1cd7f37cf3 202 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 113 173 2.6E-12 T 12-10-2018 IPR039561 Peptidase M15C GO:0008233 Alide_0778 4f50b556630b07b67ec34f1cd7f37cf3 202 SUPERFAMILY SSF55166 59 179 6.54E-30 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Alide_0778 4f50b556630b07b67ec34f1cd7f37cf3 202 Gene3D G3DSA:3.30.1380.10 52 173 2.2E-33 T 12-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Alide_0285 0a451a7cc4d05763aca3ef9539a8f200 257 Pfam PF06912 Protein of unknown function (DUF1275) 20 232 2.2E-33 T 12-10-2018 IPR010699 Protein of unknown function DUF1275 Alide_3631 284a278c189b4ac50591d527ea067903 175 Pfam PF01584 CheW-like domain 32 166 3.0E-15 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_3631 284a278c189b4ac50591d527ea067903 175 Gene3D G3DSA:2.40.50.180 50 134 9.3E-8 T 12-10-2018 Alide_3631 284a278c189b4ac50591d527ea067903 175 SMART SM00260 26 165 4.3E-5 T 12-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 Alide_3631 284a278c189b4ac50591d527ea067903 175 SUPERFAMILY SSF50341 25 170 6.41E-19 T 12-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 Alide_1892 76296d7aaa06faa17162cb008de9014c 197 Pfam PF07603 Protein of unknown function (DUF1566) 48 194 8.3E-17 T 12-10-2018 IPR011460 Protein of unknown function DUF1566 Alide_0324 8cf1ccf27099808138a3a92938dcf74a 330 Gene3D G3DSA:1.10.620.20 1 330 6.4E-111 T 12-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 Alide_0324 8cf1ccf27099808138a3a92938dcf74a 330 PIRSF PIRSF000040 1 330 4.0E-94 T 12-10-2018 IPR012078 Methane/phenol monooxygenase, hydroxylase component GO:0016709|GO:0055114 Alide_0324 8cf1ccf27099808138a3a92938dcf74a 330 SUPERFAMILY SSF47240 1 328 1.89E-104 T 12-10-2018 IPR009078 Ferritin-like superfamily Alide_0324 8cf1ccf27099808138a3a92938dcf74a 330 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 52 273 3.1E-67 T 12-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 Alide_2556 fe0c162ceb306ed2cbea78b6a0bbb690 132 Pfam PF07007 Lysozyme inhibitor LprI 32 118 1.2E-13 T 12-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal Alide_2556 fe0c162ceb306ed2cbea78b6a0bbb690 132 Gene3D G3DSA:1.20.1270.180 20 131 8.5E-9 T 12-10-2018 Alide_3263 b69b8084900250b92f01a152bdfd8fca 47 Pfam PF11346 Protein of unknown function (DUF3149) 4 37 2.9E-12 T 12-10-2018 IPR021494 Protein of unknown function DUF3149 Alide_0857 024630fb284b159a3ee22e0b9dcb35c9 218 SUPERFAMILY SSF161098 12 207 6.15E-45 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0857 024630fb284b159a3ee22e0b9dcb35c9 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 109 1.2E-28 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_0857 024630fb284b159a3ee22e0b9dcb35c9 218 Gene3D G3DSA:1.10.3720.10 3 216 6.9E-57 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0857 024630fb284b159a3ee22e0b9dcb35c9 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 213 7.4E-26 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1223 27e639ae82c46a4425424b9428de4d1b 338 Gene3D G3DSA:3.40.190.10 38 334 3.0E-54 T 12-10-2018 Alide_1223 27e639ae82c46a4425424b9428de4d1b 338 Gene3D G3DSA:3.40.190.10 115 234 3.0E-54 T 12-10-2018 Alide_1223 27e639ae82c46a4425424b9428de4d1b 338 PIRSF PIRSF027386 1 337 5.7E-98 T 12-10-2018 IPR027024 ABC-type uncharacterised transport system, substrate-binding component, TM0202 type Alide_1223 27e639ae82c46a4425424b9428de4d1b 338 Pfam PF02621 Menaquinone biosynthesis 72 291 1.0E-4 T 12-10-2018 IPR003773 Menaquinone biosynthesis enzyme Alide_1223 27e639ae82c46a4425424b9428de4d1b 338 SUPERFAMILY SSF53850 37 335 2.02E-24 T 12-10-2018 Alide_0772 12435ecd6692973e6c575687463c13f9 259 SUPERFAMILY SSF50494 25 256 3.21E-34 T 12-10-2018 IPR009003 Peptidase S1, PA clan Alide_0772 12435ecd6692973e6c575687463c13f9 259 Pfam PF13365 Trypsin-like peptidase domain 56 221 2.6E-19 T 12-10-2018 Alide_0772 12435ecd6692973e6c575687463c13f9 259 Gene3D G3DSA:2.40.10.10 24 126 2.8E-12 T 12-10-2018 Alide_0772 12435ecd6692973e6c575687463c13f9 259 Gene3D G3DSA:2.40.10.10 128 257 5.3E-20 T 12-10-2018 Alide_0980 faf110246cf3ee0fab2b0c2f1ebd8124 209 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 2 180 34.806 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Alide_0980 faf110246cf3ee0fab2b0c2f1ebd8124 209 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 109 119 - T 12-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Alide_0980 faf110246cf3ee0fab2b0c2f1ebd8124 209 Gene3D G3DSA:3.40.50.1470 1 191 6.8E-68 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Alide_0980 faf110246cf3ee0fab2b0c2f1ebd8124 209 SUPERFAMILY SSF53178 1 189 1.83E-68 T 12-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Alide_0980 faf110246cf3ee0fab2b0c2f1ebd8124 209 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 185 3.3E-61 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Alide_0980 faf110246cf3ee0fab2b0c2f1ebd8124 209 Pfam PF01195 Peptidyl-tRNA hydrolase 4 184 6.8E-56 T 12-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Alide_2803 05bb24391775f1e81a94c3706fde866e 125 ProDom PD074011 PRECURSOR SIGNAL RESISTANCE CZCI ZINC COBALT-ZINC-CADMIUM SYSTEM COBALT CATION CADMIUM 16 78 4.0E-4 T 12-10-2018 IPR020487 Cobalt/zinc/cadmium resistance protein CzcI Alide_4597 2a7ca49e43a12ae8f67f843b718caf53 315 Gene3D G3DSA:3.90.226.10 66 269 1.7E-57 T 12-10-2018 Alide_4597 2a7ca49e43a12ae8f67f843b718caf53 315 SUPERFAMILY SSF52096 62 266 3.06E-36 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_4597 2a7ca49e43a12ae8f67f843b718caf53 315 Pfam PF01343 Peptidase family S49 126 269 3.4E-31 T 12-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 Alide_4597 2a7ca49e43a12ae8f67f843b718caf53 315 PRINTS PR00127 Clp protease catalytic subunit P signature 135 152 2.0E-7 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_4597 2a7ca49e43a12ae8f67f843b718caf53 315 PRINTS PR00127 Clp protease catalytic subunit P signature 100 120 2.0E-7 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_4597 2a7ca49e43a12ae8f67f843b718caf53 315 PRINTS PR00127 Clp protease catalytic subunit P signature 240 259 2.0E-7 T 12-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Alide_4597 2a7ca49e43a12ae8f67f843b718caf53 315 Gene3D G3DSA:3.40.1750.20 167 233 1.7E-57 T 12-10-2018 Alide_4285 0a22361c3340356b33cabfa29c26ae69 392 ProSitePatterns PS00216 Sugar transport proteins signature 1. 64 80 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_4285 0a22361c3340356b33cabfa29c26ae69 392 Pfam PF07690 Major Facilitator Superfamily 15 350 8.2E-36 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_4285 0a22361c3340356b33cabfa29c26ae69 392 Gene3D G3DSA:1.20.1250.20 1 385 6.9E-72 T 12-10-2018 Alide_4285 0a22361c3340356b33cabfa29c26ae69 392 SUPERFAMILY SSF103473 6 389 5.62E-52 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_3128 13ed6d4b9a250e31ba7ec2a9af034df7 221 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 188 211 9.6E-6 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_3128 13ed6d4b9a250e31ba7ec2a9af034df7 221 Pfam PF07589 PEP-CTERM motif 187 209 2.0E-8 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_4396 385b761e403e3dbbe6a29d557ea44b6c 213 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 19 198 1.5E-27 T 12-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related Alide_4396 385b761e403e3dbbe6a29d557ea44b6c 213 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 15 198 8.4E-49 T 12-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 Alide_4602 ea5227552178df99087674638e535fc0 1009 Pfam PF01526 Tn3 transposase DDE domain 596 988 2.7E-109 T 12-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 Alide_4602 ea5227552178df99087674638e535fc0 1009 Pfam PF13700 Domain of unknown function (DUF4158) 11 173 1.2E-38 T 12-10-2018 IPR025296 Domain of unknown function DUF4158 Alide_2728 5a641f5efd892c44697659ff2b803caf 438 Pfam PF02321 Outer membrane efflux protein 57 240 2.8E-12 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2728 5a641f5efd892c44697659ff2b803caf 438 Pfam PF02321 Outer membrane efflux protein 275 436 1.4E-8 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2728 5a641f5efd892c44697659ff2b803caf 438 SUPERFAMILY SSF56954 31 432 4.45E-41 T 12-10-2018 Alide_2728 5a641f5efd892c44697659ff2b803caf 438 Gene3D G3DSA:1.20.1600.10 53 437 3.1E-31 T 12-10-2018 Alide_0611 20e941961fb4b7aa5ba7b0ba6b1af173 660 Gene3D G3DSA:1.25.20.10 30 387 3.3E-63 T 12-10-2018 Alide_0611 20e941961fb4b7aa5ba7b0ba6b1af173 660 SUPERFAMILY SSF48435 28 482 2.35E-107 T 12-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 Alide_0611 20e941961fb4b7aa5ba7b0ba6b1af173 660 Pfam PF01464 Transglycosylase SLT domain 497 595 1.2E-22 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_0611 20e941961fb4b7aa5ba7b0ba6b1af173 660 SUPERFAMILY SSF53955 483 642 2.2E-48 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_0611 20e941961fb4b7aa5ba7b0ba6b1af173 660 Gene3D G3DSA:1.10.530.10 478 641 4.4E-46 T 12-10-2018 Alide_0288 275a5237ae8f4f496f0ae5ab9c3a8bd6 294 Pfam PF00892 EamA-like transporter family 7 134 3.1E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_0288 275a5237ae8f4f496f0ae5ab9c3a8bd6 294 SUPERFAMILY SSF103481 194 291 1.7E-5 T 12-10-2018 Alide_0288 275a5237ae8f4f496f0ae5ab9c3a8bd6 294 SUPERFAMILY SSF103481 46 136 7.85E-10 T 12-10-2018 Alide_4317 aaf167fa6235f322606bb7fa155b9253 154 SUPERFAMILY SSF54637 23 143 1.08E-25 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_4317 aaf167fa6235f322606bb7fa155b9253 154 Pfam PF03061 Thioesterase superfamily 62 133 2.0E-13 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_4317 aaf167fa6235f322606bb7fa155b9253 154 Gene3D G3DSA:3.10.129.10 8 148 1.8E-35 T 12-10-2018 Alide_4317 aaf167fa6235f322606bb7fa155b9253 154 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 50 139 9.1E-11 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_2537 cedd0fb3c9e2ce8a59539e8bdf2d9b2d 148 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 14 143 9.3E-28 T 12-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like Alide_2537 cedd0fb3c9e2ce8a59539e8bdf2d9b2d 148 SUPERFAMILY SSF55961 1 144 6.11E-43 T 12-10-2018 Alide_2537 cedd0fb3c9e2ce8a59539e8bdf2d9b2d 148 Gene3D G3DSA:3.30.530.20 3 147 2.3E-39 T 12-10-2018 IPR023393 START-like domain superfamily Alide_3132 fc682c5e3975456cf289719318fcad53 172 SUPERFAMILY SSF55718 49 137 3.77E-16 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Alide_3132 fc682c5e3975456cf289719318fcad53 172 Pfam PF02036 SCP-2 sterol transfer family 51 131 6.3E-13 T 12-10-2018 IPR003033 SCP2 sterol-binding domain Alide_3132 fc682c5e3975456cf289719318fcad53 172 Gene3D G3DSA:3.30.1050.10 29 133 3.5E-5 T 12-10-2018 IPR036527 SCP2 sterol-binding domain superfamily Alide_2028 0a6ac5af7367262a168438ba52937f20 268 Pfam PF14302 Domain of unknown function (DUF4377) 179 264 2.3E-23 T 12-10-2018 IPR025485 Domain of unknown function DUF4377 Alide_2028 0a6ac5af7367262a168438ba52937f20 268 Pfam PF03724 META domain 45 155 2.7E-15 T 12-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ Alide_2028 0a6ac5af7367262a168438ba52937f20 268 Gene3D G3DSA:2.40.128.270 41 162 5.8E-13 T 12-10-2018 IPR038670 HslJ-like superfamily Alide_3137 77df056d7be6755060dcf89e093ffd15 454 Gene3D G3DSA:3.40.50.10890 220 395 2.9E-122 T 12-10-2018 Alide_3137 77df056d7be6755060dcf89e093ffd15 454 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 383 446 6.6E-11 T 12-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain Alide_3137 77df056d7be6755060dcf89e093ffd15 454 Pfam PF10996 Beta-Casp domain 249 369 7.8E-22 T 12-10-2018 IPR022712 Beta-Casp domain Alide_3137 77df056d7be6755060dcf89e093ffd15 454 SUPERFAMILY SSF56281 3 454 1.1E-122 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_3137 77df056d7be6755060dcf89e093ffd15 454 Pfam PF00753 Metallo-beta-lactamase superfamily 18 77 3.8E-12 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_3137 77df056d7be6755060dcf89e093ffd15 454 SMART SM01027 249 369 8.1E-43 T 12-10-2018 IPR022712 Beta-Casp domain Alide_3137 77df056d7be6755060dcf89e093ffd15 454 Gene3D G3DSA:3.60.15.10 6 432 2.9E-122 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_3137 77df056d7be6755060dcf89e093ffd15 454 SMART SM00849 15 229 5.5E-19 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 Gene3D G3DSA:3.60.20.40 458 646 8.4E-51 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 101 126 8.0E-59 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 515 530 8.0E-59 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 478 496 8.0E-59 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 308 324 8.0E-59 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 180 198 8.0E-59 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 542 559 8.0E-59 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 456 474 8.0E-59 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 339 358 8.0E-59 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 198 217 8.0E-59 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 Pfam PF01019 Gamma-glutamyltranspeptidase 94 642 2.8E-139 T 12-10-2018 Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 SUPERFAMILY SSF56235 72 646 3.28E-140 T 12-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Alide_1400 42330f462b3b39055ebb7910c62fa4b5 650 Gene3D G3DSA:1.10.246.130 324 457 5.4E-37 T 12-10-2018 Alide_4472 9e3b82386c4ba0ce1c63279e02d1ec84 120 SMART SM00530 9 64 7.0E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_4472 9e3b82386c4ba0ce1c63279e02d1ec84 120 Gene3D G3DSA:1.10.260.40 5 72 3.4E-11 T 12-10-2018 Alide_4472 9e3b82386c4ba0ce1c63279e02d1ec84 120 Gene3D G3DSA:1.10.10.2690 73 119 9.7E-7 T 12-10-2018 Alide_4472 9e3b82386c4ba0ce1c63279e02d1ec84 120 SUPERFAMILY SSF47413 5 68 7.04E-12 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_4472 9e3b82386c4ba0ce1c63279e02d1ec84 120 Pfam PF01381 Helix-turn-helix 13 63 8.7E-10 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_2881 775e05e5237babe51c7a92ebed8efb35 62 Gene3D G3DSA:3.30.160.390 4 59 1.5E-5 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Alide_2608 6a6291c216059b9ee0470dae2f441138 324 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 25 323 6.9E-96 T 12-10-2018 IPR019257 Histidine-specific methyltransferase, SAM-dependent Alide_2608 6a6291c216059b9ee0470dae2f441138 324 SUPERFAMILY SSF53335 57 319 6.51E-16 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2608 6a6291c216059b9ee0470dae2f441138 324 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 25 321 2.5E-108 T 12-10-2018 IPR035094 Histidine N-alpha-methyltransferase KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550 Alide_2608 6a6291c216059b9ee0470dae2f441138 324 Gene3D G3DSA:3.40.50.150 51 223 2.7E-42 T 12-10-2018 Alide_2608 6a6291c216059b9ee0470dae2f441138 324 PIRSF PIRSF018005 3 324 2.4E-108 T 12-10-2018 IPR017804 Methyltransferase EgtD-like GO:0008168 Alide_1207 892437b1828c59604052c270f373ce3e 227 Gene3D G3DSA:3.90.79.10 51 223 1.1E-48 T 12-10-2018 Alide_1207 892437b1828c59604052c270f373ce3e 227 Pfam PF00293 NUDIX domain 64 180 4.3E-13 T 12-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Alide_1207 892437b1828c59604052c270f373ce3e 227 SUPERFAMILY SSF55811 51 218 5.69E-37 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_3052 0084078c1755a90c08173a95afea4f62 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 324 5.3E-76 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3052 0084078c1755a90c08173a95afea4f62 328 Gene3D G3DSA:3.40.190.150 32 318 2.5E-108 T 12-10-2018 Alide_3052 0084078c1755a90c08173a95afea4f62 328 PIRSF PIRSF017082 3 328 9.0E-83 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3052 0084078c1755a90c08173a95afea4f62 328 SUPERFAMILY SSF53850 116 290 1.0E-11 T 12-10-2018 Alide_3052 0084078c1755a90c08173a95afea4f62 328 Gene3D G3DSA:3.40.190.10 130 253 2.5E-108 T 12-10-2018 Alide_2104 6a690645104ef3d4845cdecf839b182f 79 Gene3D G3DSA:3.40.190.150 20 79 9.1E-21 T 12-10-2018 Alide_2104 6a690645104ef3d4845cdecf839b182f 79 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 78 4.1E-5 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0895 91846b63a32c8769aa99b8900c3c8a6e 118 ProSitePatterns PS00892 HIT domain signature. 92 110 - T 12-10-2018 IPR019808 Histidine triad, conserved site Alide_0895 91846b63a32c8769aa99b8900c3c8a6e 118 Gene3D G3DSA:3.30.428.10 1 116 7.2E-39 T 12-10-2018 IPR036265 HIT-like superfamily Alide_0895 91846b63a32c8769aa99b8900c3c8a6e 118 Pfam PF11969 Scavenger mRNA decapping enzyme C-term binding 5 110 1.2E-22 T 12-10-2018 Alide_0895 91846b63a32c8769aa99b8900c3c8a6e 118 SUPERFAMILY SSF54197 3 113 1.55E-36 T 12-10-2018 IPR036265 HIT-like superfamily Alide_0895 91846b63a32c8769aa99b8900c3c8a6e 118 PRINTS PR00332 Histidine triad family signature 7 23 1.8E-18 T 12-10-2018 IPR001310 Histidine triad (HIT) protein Alide_0895 91846b63a32c8769aa99b8900c3c8a6e 118 PRINTS PR00332 Histidine triad family signature 28 46 1.8E-18 T 12-10-2018 IPR001310 Histidine triad (HIT) protein Alide_0895 91846b63a32c8769aa99b8900c3c8a6e 118 PRINTS PR00332 Histidine triad family signature 99 109 1.8E-18 T 12-10-2018 IPR001310 Histidine triad (HIT) protein Alide_4625 cc48fc5456cf32553ac06e77d007cbd1 919 SUPERFAMILY SSF52540 25 236 2.0E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4625 cc48fc5456cf32553ac06e77d007cbd1 919 Pfam PF04851 Type III restriction enzyme, res subunit 25 200 2.3E-11 T 12-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Alide_4625 cc48fc5456cf32553ac06e77d007cbd1 919 SMART SM00487 22 236 0.0077 T 12-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Alide_4625 cc48fc5456cf32553ac06e77d007cbd1 919 Gene3D G3DSA:3.40.50.300 15 218 2.2E-16 T 12-10-2018 Alide_4625 cc48fc5456cf32553ac06e77d007cbd1 919 SUPERFAMILY SSF52540 49 379 2.62E-8 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4625 cc48fc5456cf32553ac06e77d007cbd1 919 Gene3D G3DSA:3.40.50.300 284 406 8.8E-6 T 12-10-2018 Alide_0085 bd8fb5c099427a79172288dfa311bc68 171 Pfam PF02627 Carboxymuconolactone decarboxylase family 39 108 1.9E-10 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_0085 bd8fb5c099427a79172288dfa311bc68 171 SUPERFAMILY SSF69118 10 169 4.97E-30 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_0085 bd8fb5c099427a79172288dfa311bc68 171 Gene3D G3DSA:1.20.1290.10 32 169 1.5E-34 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_1831 74246f58b3a0b11da9b334dd0ff04948 203 Pfam PF11679 Protein of unknown function (DUF3275) 2 199 3.8E-92 T 12-10-2018 IPR021693 Protein of unknown function DUF3275 Alide_0580 bf2d7aba3696dee4c907e25886d78d80 493 Gene3D G3DSA:2.40.10.10 276 492 1.1E-43 T 12-10-2018 Alide_0580 bf2d7aba3696dee4c907e25886d78d80 493 Gene3D G3DSA:2.40.10.10 254 479 1.1E-43 T 12-10-2018 Alide_0580 bf2d7aba3696dee4c907e25886d78d80 493 SUPERFAMILY SSF50494 261 481 5.79E-20 T 12-10-2018 IPR009003 Peptidase S1, PA clan Alide_0052 b82a2903470748fcf91e61891ad8c1d3 256 PIRSF PIRSF009320 86 255 4.2E-9 T 12-10-2018 Alide_0052 b82a2903470748fcf91e61891ad8c1d3 256 PIRSF PIRSF009320 2 85 7.0E-16 T 12-10-2018 Alide_0052 b82a2903470748fcf91e61891ad8c1d3 256 Pfam PF13614 AAA domain 3 178 2.0E-63 T 12-10-2018 IPR025669 AAA domain Alide_0052 b82a2903470748fcf91e61891ad8c1d3 256 Gene3D G3DSA:3.40.50.300 1 256 2.2E-76 T 12-10-2018 Alide_0052 b82a2903470748fcf91e61891ad8c1d3 256 SUPERFAMILY SSF52540 1 254 6.9E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0052 b82a2903470748fcf91e61891ad8c1d3 256 PRINTS PR00091 Nitrogenase component II signature 9 22 9.9E-5 T 12-10-2018 Alide_0052 b82a2903470748fcf91e61891ad8c1d3 256 PRINTS PR00091 Nitrogenase component II signature 31 46 9.9E-5 T 12-10-2018 Alide_1662 81c9de51167a9545093aee23a1fcca58 256 Gene3D G3DSA:1.10.260.40 25 110 7.3E-6 T 12-10-2018 Alide_1662 81c9de51167a9545093aee23a1fcca58 256 SUPERFAMILY SSF51306 118 247 1.24E-18 T 12-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Alide_1662 81c9de51167a9545093aee23a1fcca58 256 Pfam PF00717 Peptidase S24-like 160 228 2.3E-7 T 12-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Alide_1662 81c9de51167a9545093aee23a1fcca58 256 Gene3D G3DSA:2.10.109.10 116 248 1.6E-36 T 12-10-2018 Alide_0209 c6950de02228916f1fc36c1643ca7f9a 420 Gene3D G3DSA:2.40.128.260 228 404 9.7E-54 T 12-10-2018 Alide_0209 c6950de02228916f1fc36c1643ca7f9a 420 Pfam PF03743 Bacterial conjugation TrbI-like protein 226 406 1.2E-55 T 12-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI Alide_0209 c6950de02228916f1fc36c1643ca7f9a 420 Gene3D G3DSA:1.10.1200.160 352 385 9.7E-54 T 12-10-2018 Alide_4051 7d34b6504cffe5e60579b0502fb11d23 499 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 177 2.9E-31 T 12-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_4051 7d34b6504cffe5e60579b0502fb11d23 499 PRINTS PR00095 Anthranilate synthase component I signature 440 454 2.7E-24 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_4051 7d34b6504cffe5e60579b0502fb11d23 499 PRINTS PR00095 Anthranilate synthase component I signature 345 358 2.7E-24 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_4051 7d34b6504cffe5e60579b0502fb11d23 499 PRINTS PR00095 Anthranilate synthase component I signature 331 344 2.7E-24 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_4051 7d34b6504cffe5e60579b0502fb11d23 499 PRINTS PR00095 Anthranilate synthase component I signature 425 439 2.7E-24 T 12-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_4051 7d34b6504cffe5e60579b0502fb11d23 499 Gene3D G3DSA:3.60.120.10 2 498 9.6E-171 T 12-10-2018 IPR005801 ADC synthase GO:0009058 Alide_4051 7d34b6504cffe5e60579b0502fb11d23 499 SUPERFAMILY SSF56322 15 492 2.75E-150 T 12-10-2018 IPR005801 ADC synthase GO:0009058 Alide_4051 7d34b6504cffe5e60579b0502fb11d23 499 Pfam PF00425 chorismate binding enzyme 226 483 1.9E-94 T 12-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal Alide_4051 7d34b6504cffe5e60579b0502fb11d23 499 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 491 1.7E-162 T 12-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Alide_2315 ca2362d975b61f72b73b1c4269ce130e 222 SMART SM01144 7 210 1.7E-56 T 12-10-2018 IPR005636 DTW Alide_2315 ca2362d975b61f72b73b1c4269ce130e 222 Pfam PF03942 DTW domain 8 205 2.7E-40 T 12-10-2018 IPR005636 DTW Alide_4432 fbd010b549628509018d49baea94e8d3 241 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 89 1.2E-7 T 12-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Alide_4432 fbd010b549628509018d49baea94e8d3 241 Gene3D G3DSA:3.40.50.300 2 234 1.4E-10 T 12-10-2018 Alide_4432 fbd010b549628509018d49baea94e8d3 241 SUPERFAMILY SSF52540 3 173 6.41E-15 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2128 375050f008666d93aa20b36a959b83dd 383 SUPERFAMILY SSF111369 56 288 2.35E-14 T 12-10-2018 Alide_2128 375050f008666d93aa20b36a959b83dd 383 Gene3D G3DSA:2.40.420.20 301 360 8.6E-53 T 12-10-2018 Alide_2128 375050f008666d93aa20b36a959b83dd 383 Gene3D G3DSA:1.10.287.470 97 188 8.6E-53 T 12-10-2018 Alide_2128 375050f008666d93aa20b36a959b83dd 383 Gene3D G3DSA:2.40.50.100 63 223 8.6E-53 T 12-10-2018 Alide_2128 375050f008666d93aa20b36a959b83dd 383 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 273 2.2E-16 T 12-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Alide_2128 375050f008666d93aa20b36a959b83dd 383 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 374 1.5E-46 T 12-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Alide_2128 375050f008666d93aa20b36a959b83dd 383 Gene3D G3DSA:2.40.30.170 53 300 8.6E-53 T 12-10-2018 Alide_2502 51162c629a682e269a95388483f2adc8 135 Pfam PF13664 Domain of unknown function (DUF4149) 8 106 1.9E-20 T 12-10-2018 IPR025423 Domain of unknown function DUF4149 Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 Pfam PF08345 Flagellar M-ring protein C-terminal 261 442 7.6E-47 T 12-10-2018 IPR013556 Flagellar M-ring C-terminal Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 PRINTS PR01009 Flagellar M-ring protein signature 128 146 2.0E-34 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 PRINTS PR01009 Flagellar M-ring protein signature 365 389 2.0E-34 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 PRINTS PR01009 Flagellar M-ring protein signature 160 174 2.0E-34 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 PRINTS PR01009 Flagellar M-ring protein signature 203 221 2.0E-34 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 PRINTS PR01009 Flagellar M-ring protein signature 274 292 2.0E-34 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 Pfam PF01514 Secretory protein of YscJ/FliF family 38 228 1.6E-70 T 12-10-2018 IPR006182 Secretory protein YscJ/FliF Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 Gene3D G3DSA:3.30.300.30 129 231 2.4E-11 T 12-10-2018 Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 PIRSF PIRSF004862 14 564 2.8E-142 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Alide_3857 e85c2f38646150ea8a7bf86fc7e6fff0 564 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 30 562 7.2E-115 T 12-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Alide_0590 2d4bd484e3b9cdc6de45b87856b091d6 204 Gene3D G3DSA:3.30.160.670 28 170 5.7E-5 T 12-10-2018 Alide_0590 2d4bd484e3b9cdc6de45b87856b091d6 204 Pfam PF13590 Domain of unknown function (DUF4136) 37 187 3.7E-8 T 12-10-2018 IPR025411 Domain of unknown function DUF4136 Alide_0885 3996ab876de991b36370c6a5d09d9442 464 Gene3D G3DSA:3.30.70.2880 343 457 2.6E-7 T 12-10-2018 IPR038367 PelD, GGDEF domain superfamily Alide_0885 3996ab876de991b36370c6a5d09d9442 464 Gene3D G3DSA:3.30.450.40 181 334 2.3E-42 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_0885 3996ab876de991b36370c6a5d09d9442 464 SUPERFAMILY SSF55781 208 331 1.24E-6 T 12-10-2018 Alide_0885 3996ab876de991b36370c6a5d09d9442 464 Pfam PF16963 PelD GGDEF domain 338 458 4.4E-40 T 12-10-2018 IPR031583 PelD, GGDEF domain Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 38 380 2.8E-25 T 12-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 198 211 9.4E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 380 393 9.4E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 85 97 9.4E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 281 300 9.4E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 65 83 9.4E-24 T 12-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 23 423 40.877 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 SUPERFAMILY SSF50621 270 424 5.86E-51 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 SUPERFAMILY SSF51419 34 293 1.06E-79 T 12-10-2018 IPR029066 PLP-binding barrel Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 15 422 8.1E-156 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 45 290 3.0E-68 T 12-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 Gene3D G3DSA:2.40.37.10 23 419 6.1E-149 T 12-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 PRINTS PR01181 Diaminopimelate decarboxylase signature 390 412 4.5E-29 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 PRINTS PR01181 Diaminopimelate decarboxylase signature 83 100 4.5E-29 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 PRINTS PR01181 Diaminopimelate decarboxylase signature 172 181 4.5E-29 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 PRINTS PR01181 Diaminopimelate decarboxylase signature 309 327 4.5E-29 T 12-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Alide_0836 bf3f6c4ee1964f59ef7e0798583478da 429 Gene3D G3DSA:3.20.20.10 42 286 6.1E-149 T 12-10-2018 IPR029066 PLP-binding barrel Alide_0694 bba0d7211d0e31e88102410b25f7e565 299 SMART SM00062 34 266 9.6E-50 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_0694 bba0d7211d0e31e88102410b25f7e565 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 264 4.0E-48 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_0694 bba0d7211d0e31e88102410b25f7e565 299 Gene3D G3DSA:3.40.190.10 128 223 2.3E-91 T 12-10-2018 Alide_0694 bba0d7211d0e31e88102410b25f7e565 299 SUPERFAMILY SSF53850 1 267 3.05E-62 T 12-10-2018 Alide_0694 bba0d7211d0e31e88102410b25f7e565 299 Gene3D G3DSA:3.40.190.10 24 269 2.3E-91 T 12-10-2018 Alide_4134 46c03e9969dfe6a5df81a90240855d7e 525 Pfam PF13091 PLD-like domain 28 141 3.2E-8 T 12-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Alide_4134 46c03e9969dfe6a5df81a90240855d7e 525 Gene3D G3DSA:3.30.870.10 13 146 3.6E-8 T 12-10-2018 Alide_4134 46c03e9969dfe6a5df81a90240855d7e 525 SUPERFAMILY SSF56024 21 150 1.64E-7 T 12-10-2018 Alide_0612 90dad8b5f2c296bd244de5d8f2cda7c0 175 Gene3D G3DSA:1.20.950.20 28 152 1.6E-11 T 12-10-2018 Alide_0612 90dad8b5f2c296bd244de5d8f2cda7c0 175 Pfam PF01292 Prokaryotic cytochrome b561 3 164 5.1E-21 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Alide_0612 90dad8b5f2c296bd244de5d8f2cda7c0 175 SUPERFAMILY SSF81342 2 166 1.1E-31 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_0133 c57cdf4cd60a05545cf9b0bc6abc64da 524 Gene3D G3DSA:3.30.300.310 418 520 4.8E-32 T 12-10-2018 Alide_0133 c57cdf4cd60a05545cf9b0bc6abc64da 524 SUPERFAMILY SSF56801 14 518 4.58E-138 T 12-10-2018 Alide_0133 c57cdf4cd60a05545cf9b0bc6abc64da 524 ProSitePatterns PS00455 Putative AMP-binding domain signature. 174 185 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_0133 c57cdf4cd60a05545cf9b0bc6abc64da 524 Pfam PF00501 AMP-binding enzyme 23 422 5.6E-82 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0133 c57cdf4cd60a05545cf9b0bc6abc64da 524 Gene3D G3DSA:3.40.50.12780 10 414 1.7E-95 T 12-10-2018 Alide_0133 c57cdf4cd60a05545cf9b0bc6abc64da 524 Pfam PF13193 AMP-binding enzyme C-terminal domain 432 506 6.9E-19 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_1565 fd83612b7e3ec5884935a7a1f35e5ae8 300 SUPERFAMILY SSF53850 13 280 2.18E-52 T 12-10-2018 Alide_1565 fd83612b7e3ec5884935a7a1f35e5ae8 300 Gene3D G3DSA:3.40.190.10 154 246 4.3E-60 T 12-10-2018 Alide_1565 fd83612b7e3ec5884935a7a1f35e5ae8 300 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 66 279 1.6E-43 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1565 fd83612b7e3ec5884935a7a1f35e5ae8 300 SMART SM00062 63 292 3.3E-50 T 12-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Alide_1565 fd83612b7e3ec5884935a7a1f35e5ae8 300 Gene3D G3DSA:3.40.190.10 57 280 4.3E-60 T 12-10-2018 Alide_1316 dc314685247e0ba6b20a4a6209a43454 287 SUPERFAMILY SSF53474 2 280 4.41E-35 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1316 dc314685247e0ba6b20a4a6209a43454 287 Gene3D G3DSA:3.40.50.1820 1 279 1.6E-65 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1316 dc314685247e0ba6b20a4a6209a43454 287 Pfam PF12697 Alpha/beta hydrolase family 18 276 2.5E-16 T 12-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Alide_3694 0bbc51850b57c7f2af7c52d94da6b8e0 254 SMART SM00346 8 99 7.7E-25 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_3694 0bbc51850b57c7f2af7c52d94da6b8e0 254 SUPERFAMILY SSF46785 9 81 4.09E-11 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_3694 0bbc51850b57c7f2af7c52d94da6b8e0 254 Gene3D G3DSA:1.10.10.10 7 77 1.6E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_3694 0bbc51850b57c7f2af7c52d94da6b8e0 254 Pfam PF09339 IclR helix-turn-helix domain 12 61 1.1E-8 T 12-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Alide_3694 0bbc51850b57c7f2af7c52d94da6b8e0 254 Gene3D G3DSA:3.30.450.40 79 243 1.2E-23 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_3694 0bbc51850b57c7f2af7c52d94da6b8e0 254 SUPERFAMILY SSF55781 85 242 9.81E-23 T 12-10-2018 Alide_0889 acad8fed2d8027bd585acc56a9638ae1 338 Gene3D G3DSA:3.40.50.720 2 273 1.0E-138 T 12-10-2018 Alide_0889 acad8fed2d8027bd585acc56a9638ae1 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 330 2.5E-127 T 12-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 Alide_0889 acad8fed2d8027bd585acc56a9638ae1 338 PRINTS PR01713 Nucleotide sugar epimerase signature 294 311 2.0E-5 T 12-10-2018 Alide_0889 acad8fed2d8027bd585acc56a9638ae1 338 PRINTS PR01713 Nucleotide sugar epimerase signature 255 270 2.0E-5 T 12-10-2018 Alide_0889 acad8fed2d8027bd585acc56a9638ae1 338 PRINTS PR01713 Nucleotide sugar epimerase signature 230 245 2.0E-5 T 12-10-2018 Alide_0889 acad8fed2d8027bd585acc56a9638ae1 338 SUPERFAMILY SSF51735 1 328 6.57E-93 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0889 acad8fed2d8027bd585acc56a9638ae1 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 3 323 2.3E-55 T 12-10-2018 IPR016040 NAD(P)-binding domain Alide_0889 acad8fed2d8027bd585acc56a9638ae1 338 Gene3D G3DSA:3.90.25.10 193 328 1.0E-138 T 12-10-2018 Alide_0496 866a585fe58b6050ff81e29234bd7d1b 140 Gene3D G3DSA:1.10.260.40 4 81 7.5E-6 T 12-10-2018 Alide_1592 202f7368105339c1b2ef63db2cc1b666 197 Pfam PF04752 ChaC-like protein 28 191 1.8E-36 T 12-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 Alide_1592 202f7368105339c1b2ef63db2cc1b666 197 SUPERFAMILY SSF110857 28 151 3.34E-11 T 12-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily Alide_1592 202f7368105339c1b2ef63db2cc1b666 197 Gene3D G3DSA:3.10.490.10 24 179 8.6E-6 T 12-10-2018 Alide_1431 1ca6876285e3c8a507e4a764d2116f09 501 Pfam PF03354 Phage Terminase 34 488 1.0E-53 T 12-10-2018 IPR005021 Terminase large subunit, Lambdalikevirus-type Alide_1431 1ca6876285e3c8a507e4a764d2116f09 501 Gene3D G3DSA:3.40.50.300 4 209 3.9E-27 T 12-10-2018 Alide_0730 ca4ef503f4f1bb49bdab5718733bcbf4 218 Gene3D G3DSA:1.20.950.20 15 195 6.7E-18 T 12-10-2018 Alide_0730 ca4ef503f4f1bb49bdab5718733bcbf4 218 Pfam PF01292 Prokaryotic cytochrome b561 16 202 2.4E-21 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Alide_0730 ca4ef503f4f1bb49bdab5718733bcbf4 218 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 18 41 6.6E-5 T 12-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Alide_0730 ca4ef503f4f1bb49bdab5718733bcbf4 218 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 170 192 6.6E-5 T 12-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 Alide_0730 ca4ef503f4f1bb49bdab5718733bcbf4 218 SUPERFAMILY SSF81342 14 208 2.2E-33 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_4384 33df50021b197f01159b848119aa038a 945 Pfam PF13555 P-loop containing region of AAA domain 4 48 2.1E-10 T 12-10-2018 Alide_4384 33df50021b197f01159b848119aa038a 945 SUPERFAMILY SSF52540 3 908 2.1E-30 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4384 33df50021b197f01159b848119aa038a 945 Gene3D G3DSA:3.40.50.300 703 923 9.4E-14 T 12-10-2018 Alide_4384 33df50021b197f01159b848119aa038a 945 Gene3D G3DSA:3.40.50.300 3 279 3.2E-18 T 12-10-2018 Alide_0779 76b28d244d67436f13f51731d1dc0a99 223 Gene3D G3DSA:3.40.30.10 2 219 1.3E-65 T 12-10-2018 Alide_0779 76b28d244d67436f13f51731d1dc0a99 223 SUPERFAMILY SSF52833 8 221 2.09E-48 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0779 76b28d244d67436f13f51731d1dc0a99 223 Pfam PF01323 DSBA-like thioredoxin domain 11 215 1.7E-36 T 12-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 Alide_2904 bb6e47c27cac1e1fd8da451a812225b0 235 SUPERFAMILY SSF52540 2 232 3.36E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2904 bb6e47c27cac1e1fd8da451a812225b0 235 Pfam PF00005 ABC transporter 17 163 3.0E-27 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2904 bb6e47c27cac1e1fd8da451a812225b0 235 SMART SM00382 26 214 6.7E-4 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2904 bb6e47c27cac1e1fd8da451a812225b0 235 Gene3D G3DSA:3.40.50.300 1 235 9.7E-60 T 12-10-2018 Alide_2904 bb6e47c27cac1e1fd8da451a812225b0 235 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0827 f438cbcce7f98a67c9d32da76c7c658c 353 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 236 255 - T 12-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Alide_0827 f438cbcce7f98a67c9d32da76c7c658c 353 SUPERFAMILY SSF53659 1 350 5.95E-103 T 12-10-2018 Alide_0827 f438cbcce7f98a67c9d32da76c7c658c 353 Gene3D G3DSA:3.40.718.10 1 352 3.9E-111 T 12-10-2018 Alide_0827 f438cbcce7f98a67c9d32da76c7c658c 353 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 2 345 1.7E-86 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_0827 f438cbcce7f98a67c9d32da76c7c658c 353 SMART SM01329 2 346 1.2E-138 T 12-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Alide_2757 fa74c8506288e930a8009e9515d7bc08 333 Gene3D G3DSA:1.10.3680.10 49 113 6.5E-6 T 12-10-2018 IPR029024 TerB-like Alide_2757 fa74c8506288e930a8009e9515d7bc08 333 Gene3D G3DSA:1.10.3680.10 1 46 4.1E-5 T 12-10-2018 IPR029024 TerB-like Alide_2757 fa74c8506288e930a8009e9515d7bc08 333 SUPERFAMILY SSF158682 2 114 4.19E-17 T 12-10-2018 IPR029024 TerB-like Alide_2757 fa74c8506288e930a8009e9515d7bc08 333 Pfam PF05099 Tellurite resistance protein TerB 7 114 1.6E-9 T 12-10-2018 IPR007791 Co-chaperone DjlA, N-terminal Alide_1618 fd647a2e74f89630535fca0f559acca8 397 Pfam PF07690 Major Facilitator Superfamily 29 343 2.4E-21 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_1618 fd647a2e74f89630535fca0f559acca8 397 Gene3D G3DSA:1.20.1250.20 199 390 2.4E-16 T 12-10-2018 Alide_1618 fd647a2e74f89630535fca0f559acca8 397 SUPERFAMILY SSF103473 8 388 1.57E-40 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1618 fd647a2e74f89630535fca0f559acca8 397 Gene3D G3DSA:1.20.1250.20 5 188 9.2E-13 T 12-10-2018 Alide_4148 4f536687cb3a8735678c974e620e9af8 158 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 23 154 2.3E-32 T 12-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 Alide_4148 4f536687cb3a8735678c974e620e9af8 158 Pfam PF00583 Acetyltransferase (GNAT) family 60 131 3.4E-11 T 12-10-2018 IPR000182 GNAT domain Alide_4148 4f536687cb3a8735678c974e620e9af8 158 Gene3D G3DSA:3.40.630.30 14 158 2.0E-41 T 12-10-2018 Alide_4148 4f536687cb3a8735678c974e620e9af8 158 SUPERFAMILY SSF55729 15 158 3.82E-32 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_0845 a347a43ebb56383d26fa2cbcd3c10458 515 SUPERFAMILY SSF49313 325 384 1.73E-6 T 12-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 Alide_0845 a347a43ebb56383d26fa2cbcd3c10458 515 Pfam PF05345 Putative Ig domain 343 382 9.7E-10 T 12-10-2018 IPR008009 Putative Ig Alide_0845 a347a43ebb56383d26fa2cbcd3c10458 515 Gene3D G3DSA:2.60.40.10 417 511 9.5E-6 T 12-10-2018 IPR013783 Immunoglobulin-like fold Alide_0845 a347a43ebb56383d26fa2cbcd3c10458 515 Gene3D G3DSA:2.60.40.10 304 394 6.1E-15 T 12-10-2018 IPR013783 Immunoglobulin-like fold Alide_1640 74b1ff56c29105f436dcfb6088e4ba5a 337 Gene3D G3DSA:1.10.443.10 167 334 2.7E-22 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_1640 74b1ff56c29105f436dcfb6088e4ba5a 337 Pfam PF00589 Phage integrase family 252 313 4.8E-12 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1640 74b1ff56c29105f436dcfb6088e4ba5a 337 SUPERFAMILY SSF56349 66 320 3.53E-36 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_1314 45b585b6280507d2de9eb0ddf563e097 242 Gene3D G3DSA:3.30.70.2970 50 153 2.4E-18 T 12-10-2018 Alide_1314 45b585b6280507d2de9eb0ddf563e097 242 Pfam PF04402 Protein of unknown function (DUF541) 39 237 7.6E-24 T 12-10-2018 IPR007497 Protein of unknown function DUF541 Alide_1314 45b585b6280507d2de9eb0ddf563e097 242 Gene3D G3DSA:3.30.110.170 41 236 2.4E-18 T 12-10-2018 Alide_2656 d6fc8a984a5fd7595fe53225f7800550 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 417 5.1E-113 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Alide_2656 d6fc8a984a5fd7595fe53225f7800550 426 PIRSF PIRSF006066 1 426 1.8E-136 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_2656 d6fc8a984a5fd7595fe53225f7800550 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 18 420 3.6E-137 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_0402 c97edb149acf2f3d4a57a2249a1095c9 365 Pfam PF04892 VanZ like family 12 128 1.9E-12 T 12-10-2018 IPR006976 VanZ-like Alide_0347 6fe935dc9288e2d992325ca10df07129 329 Gene3D G3DSA:3.40.190.10 131 254 3.1E-106 T 12-10-2018 Alide_0347 6fe935dc9288e2d992325ca10df07129 329 PIRSF PIRSF017082 1 328 1.4E-73 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0347 6fe935dc9288e2d992325ca10df07129 329 Gene3D G3DSA:3.40.190.150 35 319 3.1E-106 T 12-10-2018 Alide_0347 6fe935dc9288e2d992325ca10df07129 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 325 8.7E-86 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0347 6fe935dc9288e2d992325ca10df07129 329 SUPERFAMILY SSF53850 121 293 8.03E-13 T 12-10-2018 Alide_2850 0bad8f79e04adf52e37868614e60313f 389 Pfam PF12698 ABC-2 family transporter protein 42 380 1.2E-42 T 12-10-2018 Alide_1285 0be6f09e6e1cf9b18fa88ebb38a7f585 363 PIRSF PIRSF018494 1 363 7.0E-141 T 12-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria Alide_1285 0be6f09e6e1cf9b18fa88ebb38a7f585 363 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 70 345 2.9E-73 T 12-10-2018 IPR006430 Phage portal protein PBSX family Alide_1285 0be6f09e6e1cf9b18fa88ebb38a7f585 363 Pfam PF04860 Phage portal protein 107 345 6.7E-18 T 12-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein Alide_4017 7163467d870ee17da4302aac2910bfd1 730 Gene3D G3DSA:3.40.50.300 163 332 5.7E-8 T 12-10-2018 Alide_4017 7163467d870ee17da4302aac2910bfd1 730 Gene3D G3DSA:3.40.50.300 419 660 3.5E-27 T 12-10-2018 Alide_4017 7163467d870ee17da4302aac2910bfd1 730 SUPERFAMILY SSF52540 146 659 3.19E-52 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4017 7163467d870ee17da4302aac2910bfd1 730 Pfam PF12696 TraM recognition site of TraD and TraG 509 636 1.6E-10 T 12-10-2018 IPR032689 TraD/TraG, TraM recognition site Alide_4017 7163467d870ee17da4302aac2910bfd1 730 TIGRFAM TIGR03754 conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class 7 657 0.0 T 12-10-2018 IPR022503 Conjugative coupling factor TraG/TraD, PFGI-1 Alide_4017 7163467d870ee17da4302aac2910bfd1 730 TIGRFAM TIGR03743 SXT_TraD: conjugative coupling factor TraD, SXT/TOL subfamily 7 657 5.6E-266 T 12-10-2018 IPR022458 Conjugative coupling factor TraG/TraD Alide_3179 4a584aff68e425350c6122cbbe639892 216 Gene3D G3DSA:1.10.10.880 12 79 2.6E-9 T 12-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 Alide_3179 4a584aff68e425350c6122cbbe639892 216 SUPERFAMILY SSF89069 12 79 6.28E-11 T 12-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 Alide_3179 4a584aff68e425350c6122cbbe639892 216 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 13 93 1.2E-12 T 12-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 Alide_1329 9bd16200ce0cd995f4631edf8f9c5c8a 227 Gene3D G3DSA:1.10.340.30 17 190 7.9E-18 T 12-10-2018 Alide_1329 9bd16200ce0cd995f4631edf8f9c5c8a 227 SUPERFAMILY SSF48150 38 184 2.04E-31 T 12-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Alide_1329 9bd16200ce0cd995f4631edf8f9c5c8a 227 Pfam PF03352 Methyladenine glycosylase 40 131 3.9E-14 T 12-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 Alide_2439 9786db8bfc2280bc592a03495ee51c71 239 SMART SM00382 27 212 9.0E-10 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_2439 9786db8bfc2280bc592a03495ee51c71 239 Gene3D G3DSA:3.40.50.300 1 237 1.2E-60 T 12-10-2018 Alide_2439 9786db8bfc2280bc592a03495ee51c71 239 Pfam PF00005 ABC transporter 18 164 9.2E-33 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_2439 9786db8bfc2280bc592a03495ee51c71 239 SUPERFAMILY SSF52540 2 235 2.72E-56 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1230 b927f50e0657451c66054161c0024b09 178 Pfam PF01618 MotA/TolQ/ExbB proton channel family 79 146 4.9E-7 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Alide_2471 fba9df6db2949080eda149f1996686e1 179 Pfam PF10649 Protein of unknown function (DUF2478) 16 168 5.0E-48 T 12-10-2018 IPR018912 Protein of unknown function DUF2478 Alide_2241 6e2a9fb7bd6b6c4513ccba49eec3a2be 168 Gene3D G3DSA:3.10.590.10 2 158 1.7E-56 T 12-10-2018 Alide_2241 6e2a9fb7bd6b6c4513ccba49eec3a2be 168 SUPERFAMILY SSF88697 8 156 1.49E-56 T 12-10-2018 IPR015947 PUA-like superfamily Alide_2241 6e2a9fb7bd6b6c4513ccba49eec3a2be 168 Pfam PF01878 EVE domain 9 155 9.3E-50 T 12-10-2018 IPR002740 EVE domain Alide_4068 d1347a741db72cea2868867788e8e555 480 SUPERFAMILY SSF54637 21 158 8.07E-40 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_4068 d1347a741db72cea2868867788e8e555 480 Gene3D G3DSA:3.40.718.10 177 474 1.8E-95 T 12-10-2018 Alide_4068 d1347a741db72cea2868867788e8e555 480 Pfam PF01515 Phosphate acetyl/butaryl transferase 255 468 2.3E-44 T 12-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Alide_4068 d1347a741db72cea2868867788e8e555 480 SUPERFAMILY SSF53659 179 474 2.18E-69 T 12-10-2018 Alide_4068 d1347a741db72cea2868867788e8e555 480 Pfam PF01575 MaoC like domain 36 130 3.5E-20 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_4068 d1347a741db72cea2868867788e8e555 480 Gene3D G3DSA:3.10.129.10 18 173 3.2E-47 T 12-10-2018 Alide_0200 1102107e01851a93eae61866b164b74c 396 SUPERFAMILY SSF89796 3 388 1.11E-124 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0200 1102107e01851a93eae61866b164b74c 396 Gene3D G3DSA:3.40.50.10540 4 386 5.5E-121 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_0200 1102107e01851a93eae61866b164b74c 396 Gene3D G3DSA:3.30.1540.10 230 323 5.5E-121 T 12-10-2018 Alide_0200 1102107e01851a93eae61866b164b74c 396 Pfam PF02515 CoA-transferase family III 5 370 1.5E-111 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_0598 55212915c9cb3268cd8d16bf5a5a1e7a 319 SUPERFAMILY SSF53067 2 313 3.44E-44 T 12-10-2018 Alide_0598 55212915c9cb3268cd8d16bf5a5a1e7a 319 Gene3D G3DSA:3.30.420.40 152 292 1.9E-32 T 12-10-2018 Alide_0598 55212915c9cb3268cd8d16bf5a5a1e7a 319 Pfam PF00480 ROK family 3 312 1.8E-31 T 12-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Alide_0598 55212915c9cb3268cd8d16bf5a5a1e7a 319 Gene3D G3DSA:3.30.420.40 1 151 1.4E-21 T 12-10-2018 Alide_4036 0b0eefc9dd08a709be1f8b7d43a10bfe 210 SMART SM00953 28 174 4.0E-14 T 12-10-2018 IPR014914 RES domain Alide_4036 0b0eefc9dd08a709be1f8b7d43a10bfe 210 Pfam PF08808 RES domain 29 180 1.9E-20 T 12-10-2018 IPR014914 RES domain Alide_4498 907d0dfdb0d250508a9ca6da29d30f3a 121 Gene3D G3DSA:1.10.1660.10 1 121 3.1E-15 T 12-10-2018 Alide_4498 907d0dfdb0d250508a9ca6da29d30f3a 121 SUPERFAMILY SSF46955 4 108 3.3E-16 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_4498 907d0dfdb0d250508a9ca6da29d30f3a 121 SMART SM00422 4 73 5.0E-20 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4498 907d0dfdb0d250508a9ca6da29d30f3a 121 TIGRFAM TIGR02054 MerD: mercuric resistence transcriptional repressor protein MerD 1 119 9.1E-63 T 12-10-2018 IPR011797 Mercuric resistence transcriptional repressor protein MerD GO:0003677|GO:0045892|GO:0046689 Alide_4498 907d0dfdb0d250508a9ca6da29d30f3a 121 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 8.0E-15 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4498 907d0dfdb0d250508a9ca6da29d30f3a 121 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 8.0E-15 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4498 907d0dfdb0d250508a9ca6da29d30f3a 121 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 8.0E-15 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_4498 907d0dfdb0d250508a9ca6da29d30f3a 121 Pfam PF13411 MerR HTH family regulatory protein 4 72 8.2E-11 T 12-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Alide_1497 3218dfa9a237bcf4c9baa773ab1fba97 161 Gene3D G3DSA:3.30.70.860 3 160 2.6E-57 T 12-10-2018 IPR035571 UPF0234-like, C-terminal Alide_1497 3218dfa9a237bcf4c9baa773ab1fba97 161 Gene3D G3DSA:3.30.70.990 9 98 2.6E-57 T 12-10-2018 IPR035570 UPF0234, N-terminal Alide_1497 3218dfa9a237bcf4c9baa773ab1fba97 161 SUPERFAMILY SSF89963 89 161 3.92E-25 T 12-10-2018 IPR036183 YajQ-like superfamily Alide_1497 3218dfa9a237bcf4c9baa773ab1fba97 161 Pfam PF04461 Protein of unknown function (DUF520) 2 160 1.9E-64 T 12-10-2018 IPR007551 Protein of unknown function DUF520 Alide_1497 3218dfa9a237bcf4c9baa773ab1fba97 161 SUPERFAMILY SSF89963 2 87 2.17E-29 T 12-10-2018 IPR036183 YajQ-like superfamily Alide_1497 3218dfa9a237bcf4c9baa773ab1fba97 161 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 161 27.399 T 12-10-2018 IPR007551 Protein of unknown function DUF520 Alide_0635 0b1551b1607f567a275798ec16ab0d04 247 SUPERFAMILY SSF69593 6 243 1.16E-40 T 12-10-2018 Alide_0635 0b1551b1607f567a275798ec16ab0d04 247 SMART SM00563 76 191 2.0E-25 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Alide_0635 0b1551b1607f567a275798ec16ab0d04 247 Pfam PF01553 Acyltransferase 62 188 4.2E-22 T 12-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Alide_3481 6c5b72dbda7f266304315a10a3ed0303 255 Pfam PF02104 SURF1 family 23 230 1.1E-33 T 12-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_3713 66b218294fdced74e7878098ead54c4a 104 Pfam PF04999 Cell division protein FtsL 3 84 3.9E-20 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Alide_3713 66b218294fdced74e7878098ead54c4a 104 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 3 84 1.3E-18 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Alide_3713 66b218294fdced74e7878098ead54c4a 104 Hamap MF_00910 Cell division protein FtsL [ftsL]. 1 84 15.178 T 12-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 Alide_1921 214b1281a068cd889d31a05069dfff7a 331 Gene3D G3DSA:3.40.50.1400 167 306 1.4E-97 T 12-10-2018 Alide_1921 214b1281a068cd889d31a05069dfff7a 331 SUPERFAMILY SSF53800 4 330 3.11E-104 T 12-10-2018 Alide_1921 214b1281a068cd889d31a05069dfff7a 331 Gene3D G3DSA:3.40.50.1400 6 326 1.4E-97 T 12-10-2018 Alide_1921 214b1281a068cd889d31a05069dfff7a 331 Hamap MF_00323 Ferrochelatase [hemH]. 4 325 37.074 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Alide_1921 214b1281a068cd889d31a05069dfff7a 331 TIGRFAM TIGR00109 hemH: ferrochelatase 4 323 1.5E-90 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Alide_1921 214b1281a068cd889d31a05069dfff7a 331 Pfam PF00762 Ferrochelatase 6 324 5.8E-111 T 12-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Alide_1921 214b1281a068cd889d31a05069dfff7a 331 ProSitePatterns PS00534 Ferrochelatase signature. 194 213 - T 12-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Alide_2341 b8d097fb61cebdd10780a494193dde09 335 Pfam PF00676 Dehydrogenase E1 component 53 326 3.0E-79 T 12-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Alide_2341 b8d097fb61cebdd10780a494193dde09 335 Gene3D G3DSA:3.40.50.970 1 335 1.0E-113 T 12-10-2018 Alide_2341 b8d097fb61cebdd10780a494193dde09 335 SUPERFAMILY SSF52518 4 335 1.02E-89 T 12-10-2018 IPR029061 Thiamin diphosphate-binding fold Alide_0799 c00d629131803287b4616febc7d2b1dc 169 Pfam PF07963 Prokaryotic N-terminal methylation motif 33 55 9.7E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0799 c00d629131803287b4616febc7d2b1dc 169 SUPERFAMILY SSF54523 36 113 3.85E-10 T 12-10-2018 Alide_0799 c00d629131803287b4616febc7d2b1dc 169 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 33 55 8.6E-7 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0799 c00d629131803287b4616febc7d2b1dc 169 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 34 54 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_0799 c00d629131803287b4616febc7d2b1dc 169 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 32 104 2.4E-17 T 12-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 Alide_1304 c21fc10760f5fe38aa3d05759f6deb70 272 Pfam PF02535 ZIP Zinc transporter 92 264 1.8E-18 T 12-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Alide_3626 ec5b44f1dfb140d1f02e44532fcd39d0 178 Gene3D G3DSA:3.40.50.2020 15 169 7.6E-33 T 12-10-2018 Alide_3626 ec5b44f1dfb140d1f02e44532fcd39d0 178 SUPERFAMILY SSF53271 24 149 1.09E-26 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_3626 ec5b44f1dfb140d1f02e44532fcd39d0 178 Pfam PF00156 Phosphoribosyl transferase domain 21 147 2.0E-15 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Alide_0202 5837d93c1b9943811f0e9d0c0ae4c59f 149 Pfam PF05232 Chlorhexidine efflux transporter 12 73 5.9E-16 T 12-10-2018 IPR007896 Chlorhexidine efflux transporter Alide_0202 5837d93c1b9943811f0e9d0c0ae4c59f 149 Pfam PF05232 Chlorhexidine efflux transporter 79 141 1.5E-25 T 12-10-2018 IPR007896 Chlorhexidine efflux transporter Alide_2302 a4e51aabf55b3cab5ff50849985b3ffc 473 SUPERFAMILY SSF56954 19 459 8.89E-68 T 12-10-2018 Alide_2302 a4e51aabf55b3cab5ff50849985b3ffc 473 Gene3D G3DSA:1.20.1600.10 37 472 5.8E-77 T 12-10-2018 Alide_2302 a4e51aabf55b3cab5ff50849985b3ffc 473 Pfam PF02321 Outer membrane efflux protein 41 243 8.4E-18 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2302 a4e51aabf55b3cab5ff50849985b3ffc 473 Pfam PF02321 Outer membrane efflux protein 268 455 2.7E-24 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_0892 d243f5db4bd621fcdbfd5a921ecbb8bd 125 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 4 97 21.031 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Alide_0892 d243f5db4bd621fcdbfd5a921ecbb8bd 125 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 10 100 2.2E-13 T 12-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 Alide_0892 d243f5db4bd621fcdbfd5a921ecbb8bd 125 Gene3D G3DSA:1.10.287.1080 3 103 6.3E-28 T 12-10-2018 Alide_0892 d243f5db4bd621fcdbfd5a921ecbb8bd 125 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 7 97 8.8E-28 T 12-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Alide_0892 d243f5db4bd621fcdbfd5a921ecbb8bd 125 SUPERFAMILY SSF101386 7 101 4.49E-21 T 12-10-2018 Alide_2414 cbfeb617592a93251872635a73a6bfa5 383 SUPERFAMILY SSF53901 5 227 2.88E-30 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2414 cbfeb617592a93251872635a73a6bfa5 383 Gene3D G3DSA:3.40.47.10 1 383 4.9E-104 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2414 cbfeb617592a93251872635a73a6bfa5 383 SUPERFAMILY SSF53901 250 373 4.38E-20 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_2414 cbfeb617592a93251872635a73a6bfa5 383 PIRSF PIRSF000429 1 382 7.1E-28 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_2414 cbfeb617592a93251872635a73a6bfa5 383 Pfam PF00108 Thiolase, N-terminal domain 7 221 5.3E-11 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_1006 3ceedaadfc00a7a7c654e6d730649d58 254 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 42.215 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Alide_1006 3ceedaadfc00a7a7c654e6d730649d58 254 SUPERFAMILY SSF88713 3 252 2.52E-93 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Alide_1006 3ceedaadfc00a7a7c654e6d730649d58 254 Pfam PF03746 LamB/YcsF family 4 242 4.0E-95 T 12-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Alide_1006 3ceedaadfc00a7a7c654e6d730649d58 254 Gene3D G3DSA:3.20.20.370 2 254 5.4E-98 T 12-10-2018 Alide_2828 f5e68425edc11c3be3e919abaf8599eb 234 Pfam PF04335 VirB8 protein 23 225 1.6E-69 T 12-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 Alide_2828 f5e68425edc11c3be3e919abaf8599eb 234 Gene3D G3DSA:3.10.450.230 118 231 1.4E-5 T 12-10-2018 Alide_2828 f5e68425edc11c3be3e919abaf8599eb 234 SUPERFAMILY SSF54427 93 227 7.45E-28 T 12-10-2018 IPR032710 NTF2-like domain superfamily Alide_1170 66cedd6db9a06882c269e3b21f6eaada 279 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 7 262 37.267 T 12-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 Alide_1170 66cedd6db9a06882c269e3b21f6eaada 279 Gene3D G3DSA:3.60.21.40 9 248 2.4E-90 T 12-10-2018 Alide_1170 66cedd6db9a06882c269e3b21f6eaada 279 Gene3D G3DSA:3.30.750.180 112 239 2.4E-90 T 12-10-2018 Alide_1170 66cedd6db9a06882c269e3b21f6eaada 279 SUPERFAMILY SSF56300 9 257 2.06E-56 T 12-10-2018 Alide_1170 66cedd6db9a06882c269e3b21f6eaada 279 Pfam PF00149 Calcineurin-like phosphoesterase 10 205 4.4E-19 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Alide_4192 ba702329334c7ad133c58ad142fbca0f 119 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 8 42 3.8E-6 T 12-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Alide_4192 ba702329334c7ad133c58ad142fbca0f 119 SUPERFAMILY SSF50249 4 110 7.88E-26 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_4192 ba702329334c7ad133c58ad142fbca0f 119 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 44 104 2.1E-14 T 12-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Alide_4613 20534dc044667aac4e0060850a6f3cf7 328 SUPERFAMILY SSF54862 4 312 2.51E-89 T 12-10-2018 Alide_4613 20534dc044667aac4e0060850a6f3cf7 328 TIGRFAM TIGR03478 DMSO_red_II_bet: DMSO reductase family type II enzyme, iron-sulfur subunit 3 326 4.6E-176 T 12-10-2018 IPR017839 DMSO reductase family, type II, iron-sulphur subunit GO:0009061|GO:0042597|GO:0051536 Alide_4613 20534dc044667aac4e0060850a6f3cf7 328 Gene3D G3DSA:3.30.70.20 1 328 8.4E-137 T 12-10-2018 Alide_4613 20534dc044667aac4e0060850a6f3cf7 328 Pfam PF13247 4Fe-4S dicluster domain 127 221 1.9E-33 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_2535 6ac86edc3c3a23b615e846eb142cc5ec 115 Gene3D G3DSA:2.170.150.70 3 114 2.8E-30 T 12-10-2018 Alide_2535 6ac86edc3c3a23b615e846eb142cc5ec 115 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 25 109 6.9E-8 T 12-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 Alide_2535 6ac86edc3c3a23b615e846eb142cc5ec 115 SUPERFAMILY SSF51316 1 113 1.26E-28 T 12-10-2018 IPR011057 Mss4-like superfamily Alide_0015 c242e1f9a11b09b9689897793c8c7de2 461 SUPERFAMILY SSF55347 159 324 5.62E-46 T 12-10-2018 Alide_0015 c242e1f9a11b09b9689897793c8c7de2 461 Gene3D G3DSA:3.30.70.260 372 404 9.0E-126 T 12-10-2018 Alide_0015 c242e1f9a11b09b9689897793c8c7de2 461 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 205 227 - T 12-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Alide_0015 c242e1f9a11b09b9689897793c8c7de2 461 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 30 151 4.9E-20 T 12-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Alide_0015 c242e1f9a11b09b9689897793c8c7de2 461 SUPERFAMILY SSF51735 24 180 8.74E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_0015 c242e1f9a11b09b9689897793c8c7de2 461 Gene3D G3DSA:3.30.360.10 158 371 9.0E-126 T 12-10-2018 Alide_0015 c242e1f9a11b09b9689897793c8c7de2 461 Gene3D G3DSA:3.40.50.720 24 363 9.0E-126 T 12-10-2018 Alide_0015 c242e1f9a11b09b9689897793c8c7de2 461 Pfam PF00742 Homoserine dehydrogenase 159 337 1.2E-59 T 12-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Alide_0015 c242e1f9a11b09b9689897793c8c7de2 461 PIRSF PIRSF000098 22 442 3.3E-123 T 12-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Alide_2604 b8f312bc80065a1f67550d82f418104d 210 PIRSF PIRSF010372 1 204 1.3E-48 T 12-10-2018 IPR007396 Transcriptional regulator PAI 2-type Alide_2604 b8f312bc80065a1f67550d82f418104d 210 SUPERFAMILY SSF50475 10 179 4.62E-34 T 12-10-2018 Alide_2604 b8f312bc80065a1f67550d82f418104d 210 Gene3D G3DSA:2.30.110.10 1 203 1.0E-49 T 12-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Alide_2604 b8f312bc80065a1f67550d82f418104d 210 Pfam PF04299 Putative FMN-binding domain 1 161 1.6E-43 T 12-10-2018 IPR007396 Transcriptional regulator PAI 2-type Alide_1612 2a6b5e065691093562080f9c9115a253 291 SUPERFAMILY SSF56529 42 281 2.59E-36 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_1612 2a6b5e065691093562080f9c9115a253 291 Gene3D G3DSA:3.90.850.10 32 284 1.5E-54 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_1085 fa3cdf68ae25add256b4b6160e6789c1 328 Gene3D G3DSA:3.90.1280.10 259 316 4.2E-22 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Alide_1085 fa3cdf68ae25add256b4b6160e6789c1 328 Gene3D G3DSA:1.10.287.480 207 254 1.9E-9 T 12-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily Alide_1085 fa3cdf68ae25add256b4b6160e6789c1 328 Gene3D G3DSA:3.55.30.10 1 189 8.6E-56 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Alide_1085 fa3cdf68ae25add256b4b6160e6789c1 328 PIRSF PIRSF005261 1 317 1.4E-57 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Alide_1085 fa3cdf68ae25add256b4b6160e6789c1 328 SUPERFAMILY SSF118352 260 314 5.36E-19 T 12-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Alide_1085 fa3cdf68ae25add256b4b6160e6789c1 328 SUPERFAMILY SSF64397 4 267 6.02E-51 T 12-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Alide_1085 fa3cdf68ae25add256b4b6160e6789c1 328 Pfam PF01430 Hsp33 protein 3 306 4.2E-75 T 12-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Alide_1547 69e4de6ba697227e328affc3f9ab062a 121 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 111 1.2E-24 T 12-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Alide_3901 ae6d029cdec87c459489d9bcb85739cb 396 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 226 389 5.2E-44 T 12-10-2018 IPR000160 GGDEF domain Alide_3901 ae6d029cdec87c459489d9bcb85739cb 396 Pfam PF00990 Diguanylate cyclase, GGDEF domain 228 387 9.2E-46 T 12-10-2018 IPR000160 GGDEF domain Alide_3901 ae6d029cdec87c459489d9bcb85739cb 396 SMART SM00267 217 391 8.9E-62 T 12-10-2018 IPR000160 GGDEF domain Alide_3901 ae6d029cdec87c459489d9bcb85739cb 396 Gene3D G3DSA:3.30.70.270 221 392 1.8E-52 T 12-10-2018 Alide_3901 ae6d029cdec87c459489d9bcb85739cb 396 SUPERFAMILY SSF55073 233 391 4.63E-46 T 12-10-2018 IPR029787 Nucleotide cyclase Alide_2544 2d377876d12328a6ed305567a2e7a5a2 217 SUPERFAMILY SSF52266 36 216 3.05E-50 T 12-10-2018 Alide_2544 2d377876d12328a6ed305567a2e7a5a2 217 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 39 202 7.0E-25 T 12-10-2018 IPR013830 SGNH hydrolase-type esterase domain Alide_2544 2d377876d12328a6ed305567a2e7a5a2 217 Gene3D G3DSA:3.40.50.1110 36 217 4.2E-68 T 12-10-2018 IPR036514 SGNH hydrolase superfamily Alide_2026 bd7643f9edc03e80c3bd61a9b77cd75a 276 Gene3D G3DSA:2.70.70.10 122 276 2.1E-50 T 12-10-2018 IPR011055 Duplicated hybrid motif Alide_2026 bd7643f9edc03e80c3bd61a9b77cd75a 276 Pfam PF01551 Peptidase family M23 176 270 1.1E-25 T 12-10-2018 IPR016047 Peptidase M23 Alide_2026 bd7643f9edc03e80c3bd61a9b77cd75a 276 SUPERFAMILY SSF51261 101 274 3.98E-45 T 12-10-2018 IPR011055 Duplicated hybrid motif Alide_2026 bd7643f9edc03e80c3bd61a9b77cd75a 276 Gene3D G3DSA:2.60.40.1590 27 121 9.0E-19 T 12-10-2018 Alide_2760 c7467a8faa4f81dd749f9a4303e9bb19 339 SUPERFAMILY SSF52151 35 291 1.23E-55 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Alide_2760 c7467a8faa4f81dd749f9a4303e9bb19 339 Gene3D G3DSA:3.40.1090.10 28 139 2.8E-22 T 12-10-2018 Alide_2760 c7467a8faa4f81dd749f9a4303e9bb19 339 Gene3D G3DSA:3.40.1090.20 140 213 4.8E-7 T 12-10-2018 Alide_2760 c7467a8faa4f81dd749f9a4303e9bb19 339 Pfam PF01734 Patatin-like phospholipase 45 201 9.2E-26 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Alide_2813 2f0de52354729d8fdf56d64da4abffaf 359 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 26 354 1.1E-35 T 12-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX Alide_3496 89e5a22c3f1d515d3123147ec31b38a0 616 SUPERFAMILY SSF51735 412 540 1.24E-32 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_3496 89e5a22c3f1d515d3123147ec31b38a0 616 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 291 8.3E-86 T 12-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 Alide_3496 89e5a22c3f1d515d3123147ec31b38a0 616 Gene3D G3DSA:3.40.50.720 409 570 2.7E-37 T 12-10-2018 Alide_3496 89e5a22c3f1d515d3123147ec31b38a0 616 Pfam PF00999 Sodium/hydrogen exchanger family 15 381 4.1E-63 T 12-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Alide_3496 89e5a22c3f1d515d3123147ec31b38a0 616 Pfam PF02254 TrkA-N domain 412 524 2.4E-22 T 12-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Alide_3496 89e5a22c3f1d515d3123147ec31b38a0 616 Gene3D G3DSA:1.20.1530.20 8 391 3.4E-80 T 12-10-2018 IPR038770 Sodium/solute symporter superfamily Alide_2079 205cd7f48da890ca33e8fc400f1043d5 412 Pfam PF04233 Phage Mu protein F like protein 55 166 1.8E-16 T 12-10-2018 IPR006528 Phage head morphogenesis domain Alide_3923 3d9c8ec6914e39e707343d7de1421274 334 Pfam PF03547 Membrane transport protein 179 326 1.6E-10 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Alide_3923 3d9c8ec6914e39e707343d7de1421274 334 Pfam PF03547 Membrane transport protein 27 164 2.4E-17 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Alide_0506 d92ee692d09463854845ec79c8968603 431 Gene3D G3DSA:1.20.1250.20 203 422 3.0E-53 T 12-10-2018 Alide_0506 d92ee692d09463854845ec79c8968603 431 Pfam PF07690 Major Facilitator Superfamily 27 305 8.2E-30 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_0506 d92ee692d09463854845ec79c8968603 431 Gene3D G3DSA:1.20.1250.20 3 195 6.9E-49 T 12-10-2018 Alide_0506 d92ee692d09463854845ec79c8968603 431 SUPERFAMILY SSF103473 7 410 1.44E-62 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1574 e0e5bb01222abc408ae6d5209b980459 138 Gene3D G3DSA:3.40.1350.10 47 137 3.5E-12 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 Alide_1574 e0e5bb01222abc408ae6d5209b980459 138 Pfam PF08774 VRR-NUC domain 53 126 3.1E-7 T 12-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 Alide_1574 e0e5bb01222abc408ae6d5209b980459 138 SMART SM00990 32 127 0.0025 T 12-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 Alide_0318 e6bda339db5fb9b157c3047d4f853847 284 Pfam PF01435 Peptidase family M48 108 269 7.7E-34 T 12-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Alide_3385 59ee4c25651c9416b602abc130af48ed 211 Gene3D G3DSA:1.10.3480.10 13 209 7.3E-42 T 12-10-2018 Alide_3385 59ee4c25651c9416b602abc130af48ed 211 SUPERFAMILY SSF89155 17 209 5.62E-49 T 12-10-2018 IPR036411 TorD-like superfamily Alide_3385 59ee4c25651c9416b602abc130af48ed 211 Pfam PF02613 Nitrate reductase delta subunit 60 177 4.7E-26 T 12-10-2018 IPR020945 DMSO/Nitrate reductase chaperone Alide_3400 c9e39be684e80a5fb50036dc9fd04c0e 357 Pfam PF03595 Voltage-dependent anion channel 24 347 1.8E-47 T 12-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 Alide_3677 da8a698d019e0e90112fa0238a03d1f2 519 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 328 506 1.2E-49 T 12-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal Alide_3677 da8a698d019e0e90112fa0238a03d1f2 519 Pfam PF04932 O-Antigen ligase 157 306 7.6E-13 T 12-10-2018 IPR007016 O-antigen ligase-related Alide_3677 da8a698d019e0e90112fa0238a03d1f2 519 Pfam PF15864 Protein glycosylation ligase 100 124 8.7E-9 T 12-10-2018 IPR031726 Protein glycosylation ligase domain Alide_0243 94310ee977d40c6aa3f41acd997d65a8 97 SUPERFAMILY SSF47413 21 88 1.49E-16 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_0243 94310ee977d40c6aa3f41acd997d65a8 97 Pfam PF01381 Helix-turn-helix 29 82 7.8E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_0243 94310ee977d40c6aa3f41acd997d65a8 97 SMART SM00530 28 83 7.6E-11 T 12-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Alide_0243 94310ee977d40c6aa3f41acd997d65a8 97 Gene3D G3DSA:1.10.260.40 8 92 2.6E-18 T 12-10-2018 Alide_2367 f1a9be8bd199a824d76b4ef2d367e4cf 356 Pfam PF13406 Transglycosylase SLT domain 44 346 2.4E-92 T 12-10-2018 IPR031304 Transglycosylase SLT domain 2 Alide_2367 f1a9be8bd199a824d76b4ef2d367e4cf 356 Gene3D G3DSA:1.10.530.10 85 349 1.2E-99 T 12-10-2018 Alide_2367 f1a9be8bd199a824d76b4ef2d367e4cf 356 Gene3D G3DSA:1.10.8.350 46 220 1.2E-99 T 12-10-2018 Alide_2367 f1a9be8bd199a824d76b4ef2d367e4cf 356 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 48 349 1.7E-97 T 12-10-2018 IPR011757 Lytic transglycosylase MltB Alide_2367 f1a9be8bd199a824d76b4ef2d367e4cf 356 SUPERFAMILY SSF53955 34 350 7.12E-77 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_0894 bcbc52ad6fff3357c5ab23842039ba72 342 Pfam PF01734 Patatin-like phospholipase 12 208 8.5E-21 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Alide_0894 bcbc52ad6fff3357c5ab23842039ba72 342 Gene3D G3DSA:3.40.1090.10 127 261 4.0E-14 T 12-10-2018 Alide_0894 bcbc52ad6fff3357c5ab23842039ba72 342 Gene3D G3DSA:3.40.1090.10 1 71 2.6E-12 T 12-10-2018 Alide_0894 bcbc52ad6fff3357c5ab23842039ba72 342 SUPERFAMILY SSF52151 9 336 1.88E-48 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Alide_2301 f1a4e20988343ef1e9bb89275b500a02 430 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 303 9.8E-17 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_2301 f1a4e20988343ef1e9bb89275b500a02 430 Gene3D G3DSA:3.50.50.100 1 418 3.7E-159 T 12-10-2018 Alide_2301 f1a4e20988343ef1e9bb89275b500a02 430 SUPERFAMILY SSF51905 3 341 4.74E-25 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2301 f1a4e20988343ef1e9bb89275b500a02 430 SUPERFAMILY SSF51905 157 241 2.96E-5 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2029 8861e028006290425fcd35abb1328ac1 179 SUPERFAMILY SSF48452 2 175 2.2E-66 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_2029 8861e028006290425fcd35abb1328ac1 179 Gene3D G3DSA:1.25.40.10 79 179 1.4E-31 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_2029 8861e028006290425fcd35abb1328ac1 179 Gene3D G3DSA:1.20.58.320 1 78 6.0E-26 T 12-10-2018 Alide_2029 8861e028006290425fcd35abb1328ac1 179 Pfam PF06041 Bacterial protein of unknown function (DUF924) 6 176 1.4E-58 T 12-10-2018 IPR010323 Protein of unknown function DUF924 Alide_1451 5a01441a0bb4ee1f980121479462a6db 159 Pfam PF04214 Protein of unknown function, DUF 61 124 3.3E-31 T 12-10-2018 IPR007332 Protein of unknown function DUF411 Alide_4179 79cc5ebeb0ef98cb339bf5d46f55e8cf 404 Pfam PF03929 PepSY-associated TM region 8 395 8.2E-55 T 12-10-2018 IPR005625 PepSY-associated TM protein Alide_3007 becbd34e1262f85103c0b5b67c52efc0 125 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 9 82 1.4E-28 T 12-10-2018 IPR025161 Putative transposase IS4/IS5 family Alide_3210 3a8e38a452246196edeed17e22a6a131 173 Pfam PF13689 Domain of unknown function (DUF4154) 29 168 1.1E-31 T 12-10-2018 IPR025293 YfiR-like Alide_1948 f7fdd8b5fc408128f47ab5d85e0456e1 121 PIRSF PIRSF029720 2 121 3.1E-44 T 12-10-2018 IPR014558 Uncharacterised conserved lipoprotein Alide_1948 f7fdd8b5fc408128f47ab5d85e0456e1 121 Pfam PF03640 Secreted repeat of unknown function 24 65 3.6E-14 T 12-10-2018 IPR005297 Lipoprotein repeat Alide_1948 f7fdd8b5fc408128f47ab5d85e0456e1 121 Pfam PF03640 Secreted repeat of unknown function 78 119 2.4E-21 T 12-10-2018 IPR005297 Lipoprotein repeat Alide_2721 bd5b7b572727be2c7afc7588f06dec44 85 SUPERFAMILY SSF54786 14 69 9.42E-5 T 12-10-2018 Alide_2925 7121294fe701c2df7def0172a61264ba 281 PIRSF PIRSF015582 2 280 1.8E-71 T 12-10-2018 IPR011206 Citrate lyase beta subunit-like Alide_2925 7121294fe701c2df7def0172a61264ba 281 SUPERFAMILY SSF51621 8 231 6.98E-59 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_2925 7121294fe701c2df7def0172a61264ba 281 Gene3D G3DSA:3.20.20.60 2 281 1.9E-78 T 12-10-2018 Alide_2925 7121294fe701c2df7def0172a61264ba 281 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 10 222 6.0E-40 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Alide_2436 63230fed5ba1e87bdc2044bab1a6cc7b 297 Pfam PF02653 Branched-chain amino acid transport system / permease component 7 280 2.5E-34 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3433 7a71b2c47db89aee68178e7a6a90a9b1 240 Gene3D G3DSA:3.10.100.10 39 201 1.2E-6 T 12-10-2018 IPR016186 C-type lectin-like/link domain superfamily Alide_3433 7a71b2c47db89aee68178e7a6a90a9b1 240 SUPERFAMILY SSF56436 35 203 7.06E-27 T 12-10-2018 IPR016187 C-type lectin fold Alide_4508 fc7845e9e6a7cf6a8a6e9e71b9d2bdd1 128 Pfam PF01934 Protein of unknown function DUF86 13 109 4.6E-23 T 12-10-2018 IPR008201 Protein of unknown function DUF86 Alide_4508 fc7845e9e6a7cf6a8a6e9e71b9d2bdd1 128 SUPERFAMILY SSF81593 8 110 2.94E-5 T 12-10-2018 Alide_1066 60fd45a698f2df6a2b7a495852945018 215 Pfam PF09335 SNARE associated Golgi protein 49 174 2.2E-21 T 12-10-2018 IPR032816 SNARE associated Golgi protein Alide_2047 308d4f95487681b2585d6ae7f9dd9ba2 128 Pfam PF10800 Protein of unknown function (DUF2528) 18 123 5.6E-21 T 12-10-2018 IPR024252 Protein of unknown function DUF2528 Alide_2047 308d4f95487681b2585d6ae7f9dd9ba2 128 ProDom PD077587 EA10 BINDING SINGLE-STRANDED DNA GENE STRAND GP03 PROPHAGE-DERIVED SSB LAMBDA 7 123 7.0E-18 T 12-10-2018 IPR024252 Protein of unknown function DUF2528 Alide_4067 e901269ce5d2fd68cd8aa77027f661d0 377 Pfam PF12698 ABC-2 family transporter protein 27 366 1.0E-30 T 12-10-2018 Alide_3012 4101842a4b6a42b0e60c8c1bf0f5796d 566 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 6 559 4.6E-163 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Alide_3012 4101842a4b6a42b0e60c8c1bf0f5796d 566 Pfam PF03814 Potassium-transporting ATPase A subunit 6 558 7.4E-213 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Alide_3012 4101842a4b6a42b0e60c8c1bf0f5796d 566 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 560 27.893 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Alide_3012 4101842a4b6a42b0e60c8c1bf0f5796d 566 PIRSF PIRSF001294 1 562 1.3E-218 T 12-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Alide_3237 cf53ed476d18acb35b277073454cd56f 156 SMART SM00871 1 156 2.5E-40 T 12-10-2018 IPR010499 Bacterial transcription activator, effector binding Alide_3237 cf53ed476d18acb35b277073454cd56f 156 Pfam PF06445 GyrI-like small molecule binding domain 1 156 4.6E-38 T 12-10-2018 IPR029442 GyrI-like small molecule binding domain Alide_3237 cf53ed476d18acb35b277073454cd56f 156 SUPERFAMILY SSF55136 1 143 1.47E-38 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Alide_3237 cf53ed476d18acb35b277073454cd56f 156 Gene3D G3DSA:3.20.80.10 1 156 1.2E-49 T 12-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily Alide_4368 ad5e35980b21dd20aed70002f07fe42c 286 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 274 9.1E-36 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3543 5701be11d3e1949ffc080f7baee2f4a8 931 Pfam PF10145 Phage-related minor tail protein 76 316 2.6E-31 T 12-10-2018 IPR010090 Phage tail tape measure protein Alide_3543 5701be11d3e1949ffc080f7baee2f4a8 931 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 40 341 2.7E-50 T 12-10-2018 IPR010090 Phage tail tape measure protein Alide_2197 705b7edb30b471ba7da861a186128d0f 147 Gene3D G3DSA:1.10.10.1320 2 94 2.7E-8 T 12-10-2018 Alide_2197 705b7edb30b471ba7da861a186128d0f 147 Pfam PF13490 Putative zinc-finger 7 36 1.4E-6 T 12-10-2018 IPR027383 Putative zinc-finger Alide_2307 cb856dabb8e87c83e2200415916f7a22 261 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 23 235 3.1E-31 T 12-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Alide_2307 cb856dabb8e87c83e2200415916f7a22 261 SUPERFAMILY SSF51621 10 236 2.74E-60 T 12-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Alide_2307 cb856dabb8e87c83e2200415916f7a22 261 Gene3D G3DSA:3.20.20.60 3 258 2.6E-69 T 12-10-2018 Alide_1499 87dc5f15dc46637a547650f524b2cd22 124 Pfam PF03779 SPW repeat 15 56 1.5E-10 T 12-10-2018 IPR005530 SPW repeat Alide_1499 87dc5f15dc46637a547650f524b2cd22 124 Pfam PF03779 SPW repeat 64 110 6.3E-15 T 12-10-2018 IPR005530 SPW repeat Alide_3949 8559196c07539e9f44fb8880b734cc7f 327 SUPERFAMILY SSF50129 1 160 1.38E-50 T 12-10-2018 IPR011032 GroES-like superfamily Alide_3949 8559196c07539e9f44fb8880b734cc7f 327 Gene3D G3DSA:3.40.50.720 147 276 3.4E-83 T 12-10-2018 Alide_3949 8559196c07539e9f44fb8880b734cc7f 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 132 3.9E-31 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_3949 8559196c07539e9f44fb8880b734cc7f 327 TIGRFAM TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein 12 325 2.2E-101 T 12-10-2018 IPR014187 Alcohol dehydrogenase, zinc-binding type 2 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 Alide_3949 8559196c07539e9f44fb8880b734cc7f 327 Gene3D G3DSA:3.90.180.10 5 317 3.4E-83 T 12-10-2018 Alide_3949 8559196c07539e9f44fb8880b734cc7f 327 SUPERFAMILY SSF51735 140 292 7.98E-24 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_2951 2b5a06b0fb17041092eb7febfd5db3d5 271 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 270 1.4E-42 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_2951 2b5a06b0fb17041092eb7febfd5db3d5 271 Gene3D G3DSA:1.10.12.10 222 271 2.9E-10 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_2951 2b5a06b0fb17041092eb7febfd5db3d5 271 SUPERFAMILY SSF52096 12 271 3.98E-72 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_2951 2b5a06b0fb17041092eb7febfd5db3d5 271 Gene3D G3DSA:3.90.226.10 11 221 1.9E-62 T 12-10-2018 Alide_3673 2df57d15c11bcb2113908d9917fcead1 372 Pfam PF00793 DAHP synthetase I family 61 357 6.4E-103 T 12-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Alide_3673 2df57d15c11bcb2113908d9917fcead1 372 PIRSF PIRSF001361 10 372 6.9E-158 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Alide_3673 2df57d15c11bcb2113908d9917fcead1 372 Gene3D G3DSA:3.20.20.70 17 371 1.1E-159 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3673 2df57d15c11bcb2113908d9917fcead1 372 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 22 370 1.2E-161 T 12-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Alide_3673 2df57d15c11bcb2113908d9917fcead1 372 SUPERFAMILY SSF51569 24 369 1.36E-133 T 12-10-2018 Alide_0739 abf412d31a5ba173eb9deee6aac9b0f0 551 TIGRFAM TIGR03016 pepcterm_hypo_1: uncharacterized protein, PEP-CTERM system associated 81 551 5.1E-82 T 12-10-2018 IPR017467 Conserved hypothetical protein CHP03016, PEP-CTERM Alide_1869 be69b059c4126c121941bac6c1d4fcb2 659 Pfam PF02538 Hydantoinase B/oxoprolinase 2 528 2.5E-128 T 12-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Alide_1345 bc661a17e990dc0160e62071856da40e 236 Pfam PF00005 ABC transporter 21 163 7.9E-24 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_1345 bc661a17e990dc0160e62071856da40e 236 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_1345 bc661a17e990dc0160e62071856da40e 236 SUPERFAMILY SSF52540 4 229 9.69E-54 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1345 bc661a17e990dc0160e62071856da40e 236 SMART SM00382 30 215 4.1E-9 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_1345 bc661a17e990dc0160e62071856da40e 236 Gene3D G3DSA:3.40.50.300 2 234 5.1E-51 T 12-10-2018 Alide_0605 928b7423a7a023a860f697b028a90c57 453 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 96 352 1.7E-22 T 12-10-2018 IPR010839 Acyclic terpene utilisation Alide_0124 9937a2b460a036cf9232d732e09f75fc 66 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 23 55 5.6E-8 T 12-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Alide_2251 9696bbb44f3d26aaf1288b5eb9894ef4 364 SMART SM00771 213 343 9.8E-7 T 12-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 Alide_2251 9696bbb44f3d26aaf1288b5eb9894ef4 364 SUPERFAMILY SSF64383 212 347 1.12E-14 T 12-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 Alide_3831 4b94b9e2bfc0eb25c33fa8f4374c7237 608 PIRSF PIRSF000719 6 598 4.9E-234 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Alide_3831 4b94b9e2bfc0eb25c33fa8f4374c7237 608 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 6 595 44.947 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Alide_3831 4b94b9e2bfc0eb25c33fa8f4374c7237 608 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 14 594 0.0 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Alide_3831 4b94b9e2bfc0eb25c33fa8f4374c7237 608 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 14 590 4.7E-255 T 12-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 Alide_0991 ac85666546c991890bcf7fb8f4e9c76d 298 SUPERFAMILY SSF111331 25 295 1.83E-81 T 12-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Alide_0991 ac85666546c991890bcf7fb8f4e9c76d 298 Hamap MF_00361 NAD kinase [nadK]. 6 293 31.015 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Alide_0991 ac85666546c991890bcf7fb8f4e9c76d 298 Gene3D G3DSA:3.40.50.10330 31 293 1.6E-86 T 12-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 Alide_0991 ac85666546c991890bcf7fb8f4e9c76d 298 Pfam PF01513 ATP-NAD kinase 67 274 9.2E-55 T 12-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Alide_0991 ac85666546c991890bcf7fb8f4e9c76d 298 Gene3D G3DSA:2.60.200.30 135 270 1.6E-86 T 12-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Alide_1920 13ba31e21e3e124b7ffd72561f1e8bde 314 SUPERFAMILY SSF52821 20 164 8.38E-27 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_1920 13ba31e21e3e124b7ffd72561f1e8bde 314 SUPERFAMILY SSF52821 162 288 8.25E-20 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_1920 13ba31e21e3e124b7ffd72561f1e8bde 314 Gene3D G3DSA:3.40.250.10 163 291 2.9E-20 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_1920 13ba31e21e3e124b7ffd72561f1e8bde 314 Pfam PF00581 Rhodanese-like domain 26 139 6.2E-15 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_1920 13ba31e21e3e124b7ffd72561f1e8bde 314 Pfam PF00581 Rhodanese-like domain 169 284 4.9E-6 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_1920 13ba31e21e3e124b7ffd72561f1e8bde 314 Gene3D G3DSA:3.40.250.10 11 162 3.3E-30 T 12-10-2018 IPR036873 Rhodanese-like domain superfamily Alide_1920 13ba31e21e3e124b7ffd72561f1e8bde 314 SMART SM00450 166 288 9.3E-6 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_1920 13ba31e21e3e124b7ffd72561f1e8bde 314 SMART SM00450 25 143 1.3E-16 T 12-10-2018 IPR001763 Rhodanese-like domain Alide_0556 edb811e64bb4580f792e2076358b82fe 252 Gene3D G3DSA:3.60.21.10 1 252 2.8E-55 T 12-10-2018 IPR029052 Metallo-dependent phosphatase-like Alide_0556 edb811e64bb4580f792e2076358b82fe 252 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 214 2.6E-21 T 12-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Alide_0556 edb811e64bb4580f792e2076358b82fe 252 SUPERFAMILY SSF56300 1 251 4.75E-51 T 12-10-2018 Alide_0556 edb811e64bb4580f792e2076358b82fe 252 PIRSF PIRSF000883 1 252 3.0E-53 T 12-10-2018 IPR011152 Phosphoesterase MJ0912 Alide_0877 eae04348993f75182346bbda3e96dbcc 372 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 13 372 47.93 T 12-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Alide_0877 eae04348993f75182346bbda3e96dbcc 372 Gene3D G3DSA:3.90.1150.10 24 365 3.1E-93 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_0877 eae04348993f75182346bbda3e96dbcc 372 SUPERFAMILY SSF53383 16 370 3.94E-66 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_0877 eae04348993f75182346bbda3e96dbcc 372 Gene3D G3DSA:3.40.640.10 53 276 3.1E-93 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_0877 eae04348993f75182346bbda3e96dbcc 372 Pfam PF00155 Aminotransferase class I and II 55 367 4.5E-36 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_0822 4a145399545b9cfcee3c84492f04b09b 284 PIRSF PIRSF026649 2 281 1.4E-63 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Alide_0822 4a145399545b9cfcee3c84492f04b09b 284 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 6 271 7.7E-28 T 12-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Alide_3987 55bd132f4028cd4f1d037cdeaecaa34f 320 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 42 316 7.2E-93 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3987 55bd132f4028cd4f1d037cdeaecaa34f 320 SUPERFAMILY SSF53850 106 284 1.88E-16 T 12-10-2018 Alide_3987 55bd132f4028cd4f1d037cdeaecaa34f 320 Gene3D G3DSA:3.40.190.10 121 244 4.3E-112 T 12-10-2018 Alide_3987 55bd132f4028cd4f1d037cdeaecaa34f 320 PIRSF PIRSF017082 1 319 3.3E-80 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3987 55bd132f4028cd4f1d037cdeaecaa34f 320 Gene3D G3DSA:3.40.190.150 23 310 4.3E-112 T 12-10-2018 Alide_4297 6c0744a6cc7f572270926f1a4728f88a 553 Pfam PF02652 L-lactate permease 16 540 1.4E-156 T 12-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Alide_4297 6c0744a6cc7f572270926f1a4728f88a 553 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 5 543 3.0E-159 T 12-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Alide_0184 221208fbedee6e39ca1fd1f499ab6d9d 143 Pfam PF03061 Thioesterase superfamily 47 121 2.0E-12 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_0184 221208fbedee6e39ca1fd1f499ab6d9d 143 SUPERFAMILY SSF54637 11 129 2.09E-27 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_0184 221208fbedee6e39ca1fd1f499ab6d9d 143 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 36 127 2.9E-15 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_0184 221208fbedee6e39ca1fd1f499ab6d9d 143 Gene3D G3DSA:3.10.129.10 7 137 9.1E-35 T 12-10-2018 Alide_2552 2e1c1bbbb1aeac3bb62bd93ab1b23f2a 202 SUPERFAMILY SSF52499 1 202 1.83E-39 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Alide_2552 2e1c1bbbb1aeac3bb62bd93ab1b23f2a 202 Gene3D G3DSA:3.40.50.850 1 202 1.2E-50 T 12-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Alide_2552 2e1c1bbbb1aeac3bb62bd93ab1b23f2a 202 Pfam PF00857 Isochorismatase family 9 179 9.9E-24 T 12-10-2018 IPR000868 Isochorismatase-like GO:0003824 Alide_0951 1f45c67fe1a0b2c8088d71e954b8f131 150 SUPERFAMILY SSF54197 4 141 9.19E-34 T 12-10-2018 IPR036265 HIT-like superfamily Alide_0951 1f45c67fe1a0b2c8088d71e954b8f131 150 PIRSF PIRSF000714 4 143 4.3E-41 T 12-10-2018 IPR026026 Histidine triad hydrolase, Hint-type Alide_0951 1f45c67fe1a0b2c8088d71e954b8f131 150 Pfam PF01230 HIT domain 25 101 7.7E-14 T 12-10-2018 IPR001310 Histidine triad (HIT) protein Alide_0951 1f45c67fe1a0b2c8088d71e954b8f131 150 Gene3D G3DSA:3.30.428.10 12 143 1.6E-35 T 12-10-2018 IPR036265 HIT-like superfamily Alide_1406 ac22af06ca10b5b9e0277142653fb93e 525 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 67 229 2.3E-11 T 12-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like Alide_4177 9e8e6e821626a5638991ba9d6ffacb93 173 Pfam PF02627 Carboxymuconolactone decarboxylase family 39 121 3.6E-12 T 12-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Alide_4177 9e8e6e821626a5638991ba9d6ffacb93 173 Gene3D G3DSA:1.20.1290.10 32 172 1.5E-41 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_4177 9e8e6e821626a5638991ba9d6ffacb93 173 SUPERFAMILY SSF69118 2 170 7.92E-39 T 12-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 Alide_1322 30ad720994b3efcae5b86922619a2260 119 Gene3D G3DSA:3.10.50.40 1 119 6.2E-49 T 12-10-2018 Alide_1322 30ad720994b3efcae5b86922619a2260 119 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 23 115 4.7E-34 T 12-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Alide_1322 30ad720994b3efcae5b86922619a2260 119 SUPERFAMILY SSF54534 3 117 4.71E-43 T 12-10-2018 Alide_2520 947ca29a0967079cb359b3766e3d0257 218 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 140 216 1.8E-18 T 12-10-2018 IPR006260 TonB/TolA, C-terminal Alide_2520 947ca29a0967079cb359b3766e3d0257 218 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 138 216 5.1E-22 T 12-10-2018 IPR037682 TonB, C-terminal GO:0055085 Alide_2520 947ca29a0967079cb359b3766e3d0257 218 PRINTS PR01217 Proline rich extensin signature 104 121 1.2E-11 T 12-10-2018 Alide_2520 947ca29a0967079cb359b3766e3d0257 218 PRINTS PR01217 Proline rich extensin signature 41 53 1.2E-11 T 12-10-2018 Alide_2520 947ca29a0967079cb359b3766e3d0257 218 PRINTS PR01217 Proline rich extensin signature 86 102 1.2E-11 T 12-10-2018 Alide_2520 947ca29a0967079cb359b3766e3d0257 218 PRINTS PR01217 Proline rich extensin signature 56 77 1.2E-11 T 12-10-2018 Alide_2520 947ca29a0967079cb359b3766e3d0257 218 SUPERFAMILY SSF74653 133 214 3.01E-23 T 12-10-2018 Alide_2520 947ca29a0967079cb359b3766e3d0257 218 Gene3D G3DSA:3.30.1150.10 93 217 5.9E-25 T 12-10-2018 Alide_4533 60e64ad231506568f3e58301f81938a3 476 Pfam PF03743 Bacterial conjugation TrbI-like protein 198 398 5.3E-35 T 12-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI Alide_1286 400704f05482953345090ee3b12b1a82 325 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 163 175 - T 12-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Alide_1286 400704f05482953345090ee3b12b1a82 325 Gene3D G3DSA:3.20.20.70 1 319 2.3E-91 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_1286 400704f05482953345090ee3b12b1a82 325 SMART SM01240 2 322 6.7E-92 T 12-10-2018 Alide_1286 400704f05482953345090ee3b12b1a82 325 SUPERFAMILY SSF51412 3 311 1.96E-85 T 12-10-2018 Alide_1286 400704f05482953345090ee3b12b1a82 325 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 5 309 7.5E-61 T 12-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Alide_1286 400704f05482953345090ee3b12b1a82 325 Hamap MF_01511 GMP reductase [guaC]. 1 323 65.011 T 12-10-2018 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 Alide_1286 400704f05482953345090ee3b12b1a82 325 TIGRFAM TIGR01306 GMP_reduct_2: guanosine monophosphate reductase 3 314 7.2E-164 T 12-10-2018 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 Alide_1286 400704f05482953345090ee3b12b1a82 325 PIRSF PIRSF036500 1 319 1.3E-168 T 12-10-2018 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 Alide_1802 27d1ab7e35a830176c2a1a222b554e61 231 Gene3D G3DSA:1.10.357.10 51 186 3.6E-11 T 12-10-2018 Alide_1802 27d1ab7e35a830176c2a1a222b554e61 231 SUPERFAMILY SSF48498 104 188 3.32E-8 T 12-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Alide_1802 27d1ab7e35a830176c2a1a222b554e61 231 SUPERFAMILY SSF46689 2 67 3.39E-9 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1802 27d1ab7e35a830176c2a1a222b554e61 231 Gene3D G3DSA:1.10.10.60 1 50 1.8E-5 T 12-10-2018 Alide_2494 8c39722a5d107b808164b10333d3ca9e 272 Pfam PF13444 Acetyltransferase (GNAT) domain 51 151 1.5E-33 T 12-10-2018 Alide_2494 8c39722a5d107b808164b10333d3ca9e 272 SUPERFAMILY SSF55729 35 245 3.88E-39 T 12-10-2018 IPR016181 Acyl-CoA N-acyltransferase Alide_2494 8c39722a5d107b808164b10333d3ca9e 272 Gene3D G3DSA:3.40.630.30 37 191 3.2E-24 T 12-10-2018 Alide_1767 10f36b30ae1d1752ad0f312132d29495 457 ProSitePatterns PS00216 Sugar transport proteins signature 1. 86 103 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_1767 10f36b30ae1d1752ad0f312132d29495 457 SUPERFAMILY SSF103473 18 445 8.5E-81 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1767 10f36b30ae1d1752ad0f312132d29495 457 Gene3D G3DSA:1.20.1250.20 26 444 1.5E-69 T 12-10-2018 Alide_1767 10f36b30ae1d1752ad0f312132d29495 457 Pfam PF07690 Major Facilitator Superfamily 39 314 2.0E-36 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_1767 10f36b30ae1d1752ad0f312132d29495 457 ProSitePatterns PS00217 Sugar transport proteins signature 2. 128 153 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_1379 ca5f0f9d4bfbecad7f0b1ef703a0978e 324 SUPERFAMILY SSF161098 90 306 1.13E-20 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1379 ca5f0f9d4bfbecad7f0b1ef703a0978e 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 8.8E-42 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1379 ca5f0f9d4bfbecad7f0b1ef703a0978e 324 Gene3D G3DSA:1.10.3720.10 83 315 4.9E-24 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1726 0b5906ad4d7411054f91a169b393c0fc 50 Pfam PF11295 Protein of unknown function (DUF3096) 9 44 3.7E-18 T 12-10-2018 IPR021446 Protein of unknown function DUF3096 Alide_3495 547170241708268ef9a6e61b9c9f80df 212 Pfam PF01810 LysE type translocator 16 202 1.1E-28 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Alide_3495 547170241708268ef9a6e61b9c9f80df 212 PIRSF PIRSF006324 1 207 3.7E-46 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Alide_0156 288e6d8ae55427f8dc327c3cf81db37c 418 Pfam PF07690 Major Facilitator Superfamily 28 369 2.1E-33 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_0156 288e6d8ae55427f8dc327c3cf81db37c 418 Gene3D G3DSA:1.20.1250.20 14 406 8.2E-43 T 12-10-2018 Alide_0156 288e6d8ae55427f8dc327c3cf81db37c 418 SUPERFAMILY SSF103473 19 410 5.36E-52 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_4260 8e24c7c3359bda29b6b39e6fb1d29016 189 Gene3D G3DSA:3.30.700.10 31 189 8.6E-36 T 12-10-2018 Alide_4260 8e24c7c3359bda29b6b39e6fb1d29016 189 Pfam PF00114 Pilin (bacterial filament) 37 189 6.6E-8 T 12-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 Alide_4260 8e24c7c3359bda29b6b39e6fb1d29016 189 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 29 1.1E-9 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_4260 8e24c7c3359bda29b6b39e6fb1d29016 189 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 29 2.1E-10 T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_4260 8e24c7c3359bda29b6b39e6fb1d29016 189 SUPERFAMILY SSF54523 9 136 5.07E-19 T 12-10-2018 Alide_4260 8e24c7c3359bda29b6b39e6fb1d29016 189 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 12-10-2018 IPR012902 Prokaryotic N-terminal methylation site Alide_2136 ebc99311f1f567b23adaac026380f35f 209 Gene3D G3DSA:3.40.50.2020 1 209 1.2E-80 T 12-10-2018 Alide_2136 ebc99311f1f567b23adaac026380f35f 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 45.417 T 12-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Alide_2136 ebc99311f1f567b23adaac026380f35f 209 SUPERFAMILY SSF53271 3 207 7.74E-72 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_2136 ebc99311f1f567b23adaac026380f35f 209 Pfam PF14681 Uracil phosphoribosyltransferase 6 208 1.6E-73 T 12-10-2018 Alide_2136 ebc99311f1f567b23adaac026380f35f 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 209 8.3E-86 T 12-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Alide_0646 9200abd052015337b7d67823465f3483 393 Pfam PF00534 Glycosyl transferases group 1 212 346 5.2E-9 T 12-10-2018 IPR001296 Glycosyl transferase, family 1 Alide_0646 9200abd052015337b7d67823465f3483 393 Gene3D G3DSA:3.40.50.2000 31 378 2.8E-31 T 12-10-2018 Alide_0646 9200abd052015337b7d67823465f3483 393 SUPERFAMILY SSF53756 22 380 7.63E-42 T 12-10-2018 Alide_0646 9200abd052015337b7d67823465f3483 393 Gene3D G3DSA:3.40.50.2000 190 362 2.8E-31 T 12-10-2018 Alide_0646 9200abd052015337b7d67823465f3483 393 Pfam PF09314 Domain of unknown function (DUF1972) 19 191 9.0E-21 T 12-10-2018 IPR015393 Domain of unknown function DUF1972 Alide_4390 463fb2f2a04b049abd9dc1c3c8bd760e 194 Pfam PF07021 Methionine biosynthesis protein MetW 7 190 2.9E-65 T 12-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 Alide_4390 463fb2f2a04b049abd9dc1c3c8bd760e 194 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 7 191 4.0E-71 T 12-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 Alide_4390 463fb2f2a04b049abd9dc1c3c8bd760e 194 SUPERFAMILY SSF53335 8 170 1.84E-26 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_4390 463fb2f2a04b049abd9dc1c3c8bd760e 194 Gene3D G3DSA:3.40.50.150 6 175 5.7E-27 T 12-10-2018 Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 Gene3D G3DSA:1.10.10.60 514 555 2.1E-11 T 12-10-2018 Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 Gene3D G3DSA:3.40.50.300 241 422 4.1E-58 T 12-10-2018 Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 Gene3D G3DSA:1.10.8.60 423 500 1.9E-19 T 12-10-2018 Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 SUPERFAMILY SSF46689 465 553 2.46E-8 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 SUPERFAMILY SSF55785 116 207 4.99E-9 T 12-10-2018 IPR035965 PAS domain superfamily Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 275 288 - T 12-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 SMART SM00382 271 415 1.2E-7 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 Pfam PF00158 Sigma-54 interaction domain 251 417 2.7E-60 T 12-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 SUPERFAMILY SSF52540 251 494 4.6E-62 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 Pfam PF02954 Bacterial regulatory protein, Fis family 518 553 3.7E-10 T 12-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 338 353 - T 12-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Alide_4307 0a829ea665bc1c4d76cf585b1baa73e8 558 Gene3D G3DSA:3.30.450.20 111 210 2.2E-7 T 12-10-2018 Alide_2792 9c2b7127f1d96180cae5199528cbfd1c 360 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 7 356 4.0E-122 T 12-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 Alide_2792 9c2b7127f1d96180cae5199528cbfd1c 360 PIRSF PIRSF015557 2 360 9.2E-99 T 12-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 Alide_2792 9c2b7127f1d96180cae5199528cbfd1c 360 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 7 356 3.0E-127 T 12-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 Alide_1387 bca4e1b5d3c7188e8e83b16ffd848433 69 Pfam PF11160 Protein of unknown function (DUF2945) 8 67 4.8E-24 T 12-10-2018 IPR021331 Protein of unknown function DUF2945 Alide_0661 9415b6a1b22e00b98e96f5bb284413f8 366 SUPERFAMILY SSF63829 154 324 1.7E-9 T 12-10-2018 Alide_3929 78896cdd77a1893ba8cfcf42b588d2bb 313 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 160 267 1.8E-12 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Alide_3929 78896cdd77a1893ba8cfcf42b588d2bb 313 Gene3D G3DSA:3.10.180.10 9 132 2.4E-13 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_3929 78896cdd77a1893ba8cfcf42b588d2bb 313 Gene3D G3DSA:3.10.180.10 154 300 2.1E-31 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_3929 78896cdd77a1893ba8cfcf42b588d2bb 313 SUPERFAMILY SSF54593 10 272 3.0E-32 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2234 1bf5b14dc3fef71f6df76e1b85b8f60a 233 SUPERFAMILY SSF89562 39 200 2.88E-33 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_2234 1bf5b14dc3fef71f6df76e1b85b8f60a 233 Gene3D G3DSA:3.50.30.40 37 201 3.6E-40 T 12-10-2018 Alide_2234 1bf5b14dc3fef71f6df76e1b85b8f60a 233 Pfam PF03737 Aldolase/RraA 44 190 7.0E-32 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_4457 82b1a113339789b2ac2200e169eacaf6 1009 Pfam PF01526 Tn3 transposase DDE domain 596 988 2.5E-108 T 12-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 Alide_4457 82b1a113339789b2ac2200e169eacaf6 1009 Pfam PF13700 Domain of unknown function (DUF4158) 11 173 1.2E-38 T 12-10-2018 IPR025296 Domain of unknown function DUF4158 Alide_4324 0d378661b4e69ed747907e4cd6aba44a 204 PIRSF PIRSF006324 1 204 8.6E-55 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Alide_4324 0d378661b4e69ed747907e4cd6aba44a 204 Pfam PF01810 LysE type translocator 16 200 4.4E-28 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Alide_3942 3a073cd51a644b05a71067a2d517e7bd 224 Gene3D G3DSA:3.50.30.100 6 197 1.0E-53 T 12-10-2018 Alide_3942 3a073cd51a644b05a71067a2d517e7bd 224 SUPERFAMILY SSF89562 24 184 1.12E-45 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_3942 3a073cd51a644b05a71067a2d517e7bd 224 Pfam PF03737 Aldolase/RraA 27 173 4.1E-43 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_1072 eef17d11b3ff0fe7a66069a7c63916fa 111 Gene3D G3DSA:2.60.120.10 1 107 1.0E-30 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_1072 eef17d11b3ff0fe7a66069a7c63916fa 111 SUPERFAMILY SSF51182 14 109 8.54E-18 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_1072 eef17d11b3ff0fe7a66069a7c63916fa 111 Pfam PF07883 Cupin domain 45 102 2.9E-9 T 12-10-2018 IPR013096 Cupin 2, conserved barrel Alide_1732 f544bf07be4f545dba66f40f66a2f419 210 SUPERFAMILY SSF89562 13 174 6.54E-39 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_1732 f544bf07be4f545dba66f40f66a2f419 210 Gene3D G3DSA:3.50.30.100 2 187 9.5E-47 T 12-10-2018 Alide_1732 f544bf07be4f545dba66f40f66a2f419 210 Pfam PF03737 Aldolase/RraA 28 164 1.4E-34 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_1323 58f9b83c7a4c6565775b343294194103 101 Pfam PF01638 HxlR-like helix-turn-helix 19 95 1.9E-4 T 12-10-2018 IPR002577 Helix-turn-helix, HxlR type Alide_1323 58f9b83c7a4c6565775b343294194103 101 Gene3D G3DSA:1.10.10.10 2 101 2.0E-14 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_1323 58f9b83c7a4c6565775b343294194103 101 SUPERFAMILY SSF46785 7 97 1.53E-14 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_4631 938727ded31cb2715fcbf73e95076881 150 Gene3D G3DSA:1.10.260.40 46 134 6.7E-8 T 12-10-2018 Alide_4631 938727ded31cb2715fcbf73e95076881 150 SUPERFAMILY SSF47413 76 126 1.1E-5 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_0423 16e32730d5e49aca1a3700face9d7765 242 Gene3D G3DSA:1.20.950.20 27 191 2.9E-5 T 12-10-2018 Alide_0423 16e32730d5e49aca1a3700face9d7765 242 Pfam PF01292 Prokaryotic cytochrome b561 31 203 5.4E-10 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Alide_0423 16e32730d5e49aca1a3700face9d7765 242 SUPERFAMILY SSF81342 30 208 1.49E-23 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_2401 3b81032c3c6c7ed1d33b1a6e4690458e 94 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 7 76 9.7E-30 T 12-10-2018 IPR018720 Domain of unknown function DUF2249 Alide_1173 a05cc73c73d96ac5702bb11d39339a45 269 SUPERFAMILY SSF161098 11 260 7.06E-48 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1173 a05cc73c73d96ac5702bb11d39339a45 269 Gene3D G3DSA:1.10.3720.10 6 267 1.4E-51 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1173 a05cc73c73d96ac5702bb11d39339a45 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 260 2.2E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_3469 db7363be730034930b472ff06eb05694 185 Pfam PF01292 Prokaryotic cytochrome b561 9 180 3.5E-21 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Alide_3469 db7363be730034930b472ff06eb05694 185 SUPERFAMILY SSF81342 5 180 1.88E-28 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_0752 406c159f90fd79fb8066652dbfba92f5 441 Pfam PF04932 O-Antigen ligase 205 353 6.1E-14 T 12-10-2018 IPR007016 O-antigen ligase-related Alide_0752 406c159f90fd79fb8066652dbfba92f5 441 TIGRFAM TIGR03097 PEP_O_lig_1: probable O-glycosylation ligase, exosortase A-associated 2 420 1.2E-92 T 12-10-2018 IPR017528 Conserved hypothetical protein CHP03097, O-antigen ligase-related Alide_3516 86ed2d1b8e2472ce3c9c343ac9f07313 144 Pfam PF08897 Domain of unknown function (DUF1841) 6 139 2.6E-55 T 12-10-2018 IPR014993 Protein of unknown function DUF1841 Alide_2950 3438131937b70f924af679ec46f679a4 337 SUPERFAMILY SSF53850 137 304 5.1E-5 T 12-10-2018 Alide_2950 3438131937b70f924af679ec46f679a4 337 Gene3D G3DSA:3.40.190.10 136 262 3.0E-72 T 12-10-2018 Alide_2950 3438131937b70f924af679ec46f679a4 337 Gene3D G3DSA:3.40.190.150 40 327 3.0E-72 T 12-10-2018 Alide_2950 3438131937b70f924af679ec46f679a4 337 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 60 332 2.7E-44 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2950 3438131937b70f924af679ec46f679a4 337 PIRSF PIRSF017082 1 336 1.2E-47 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_2464 22215e067e577735d8b25e9d1e33b9b5 238 Gene3D G3DSA:3.40.190.10 27 237 6.5E-36 T 12-10-2018 Alide_2464 22215e067e577735d8b25e9d1e33b9b5 238 SUPERFAMILY SSF53850 22 238 1.15E-41 T 12-10-2018 Alide_2464 22215e067e577735d8b25e9d1e33b9b5 238 Gene3D G3DSA:3.40.190.10 96 200 6.5E-36 T 12-10-2018 Alide_2464 22215e067e577735d8b25e9d1e33b9b5 238 Pfam PF13531 Bacterial extracellular solute-binding protein 23 238 2.2E-30 T 12-10-2018 Alide_2464 22215e067e577735d8b25e9d1e33b9b5 238 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 31 237 7.4E-29 T 12-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 Alide_2156 9644e9170cf3bcef7090ced756ca8592 531 SUPERFAMILY SSF46626 11 113 2.12E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2156 9644e9170cf3bcef7090ced756ca8592 531 SUPERFAMILY SSF51004 113 524 1.44E-73 T 12-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily Alide_2156 9644e9170cf3bcef7090ced756ca8592 531 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 33 103 3.3E-12 T 12-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_2156 9644e9170cf3bcef7090ced756ca8592 531 Gene3D G3DSA:1.10.760.10 11 107 4.0E-18 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2156 9644e9170cf3bcef7090ced756ca8592 531 Gene3D G3DSA:2.140.10.20 111 525 2.1E-104 T 12-10-2018 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily Alide_2156 9644e9170cf3bcef7090ced756ca8592 531 Pfam PF02239 Cytochrome D1 heme domain 140 295 7.5E-54 T 12-10-2018 Alide_2156 9644e9170cf3bcef7090ced756ca8592 531 Pfam PF02239 Cytochrome D1 heme domain 324 522 7.9E-46 T 12-10-2018 Alide_0615 a72d036954db673bb18a16c0ef9dff36 365 Pfam PF01070 FMN-dependent dehydrogenase 23 361 6.7E-111 T 12-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 Alide_0615 a72d036954db673bb18a16c0ef9dff36 365 SUPERFAMILY SSF51395 11 361 1.16E-80 T 12-10-2018 Alide_0615 a72d036954db673bb18a16c0ef9dff36 365 PIRSF PIRSF000138 4 364 2.9E-111 T 12-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 Alide_0615 a72d036954db673bb18a16c0ef9dff36 365 Gene3D G3DSA:3.20.20.70 10 364 1.5E-115 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_2877 649870f2cf36b3ad369d8389edc0de5e 181 Pfam PF11000 Protein of unknown function (DUF2840) 32 178 3.2E-63 T 12-10-2018 IPR021263 Protein of unknown function DUF2840 Alide_3329 b72f22cd5677f87e93c5190e6bc79700 45 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 5.0E-18 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type Alide_3329 b72f22cd5677f87e93c5190e6bc79700 45 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 42 3.0E-11 T 12-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type Alide_4462 919aab8caf51a9149624948ff5d5ba58 234 SUPERFAMILY SSF47616 78 206 8.87E-36 T 12-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Alide_4462 919aab8caf51a9149624948ff5d5ba58 234 Gene3D G3DSA:1.20.1050.10 88 196 2.2E-81 T 12-10-2018 Alide_4462 919aab8caf51a9149624948ff5d5ba58 234 Pfam PF00043 Glutathione S-transferase, C-terminal domain 135 197 1.6E-9 T 12-10-2018 IPR004046 Glutathione S-transferase, C-terminal Alide_4462 919aab8caf51a9149624948ff5d5ba58 234 Gene3D G3DSA:3.40.30.10 2 203 2.2E-81 T 12-10-2018 Alide_4462 919aab8caf51a9149624948ff5d5ba58 234 SUPERFAMILY SSF52833 1 84 3.6E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_4462 919aab8caf51a9149624948ff5d5ba58 234 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 81 4.9E-13 T 12-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 Alide_2379 be136c14f770e7d6417767fcbcaded2f 425 SUPERFAMILY SSF53822 33 384 7.4E-66 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_2379 be136c14f770e7d6417767fcbcaded2f 425 Gene3D G3DSA:3.40.50.2300 164 420 1.2E-139 T 12-10-2018 Alide_2379 be136c14f770e7d6417767fcbcaded2f 425 Gene3D G3DSA:3.40.50.2300 33 377 1.2E-139 T 12-10-2018 Alide_2379 be136c14f770e7d6417767fcbcaded2f 425 Pfam PF13458 Periplasmic binding protein 33 383 6.3E-67 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_4629 c64b2ad7854eedd0d15c4a431aaded5f 278 Gene3D G3DSA:3.40.1350.10 111 220 1.5E-9 T 12-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 Alide_4629 c64b2ad7854eedd0d15c4a431aaded5f 278 SUPERFAMILY SSF52980 110 217 2.6E-26 T 12-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Alide_4629 c64b2ad7854eedd0d15c4a431aaded5f 278 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 239 277 1.4E-8 T 12-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Alide_4629 c64b2ad7854eedd0d15c4a431aaded5f 278 SUPERFAMILY SSF57783 236 277 1.7E-6 T 12-10-2018 Alide_4629 c64b2ad7854eedd0d15c4a431aaded5f 278 Pfam PF04471 Restriction endonuclease 105 216 8.4E-30 T 12-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 Alide_3866 4a706face9d46b6ada5abe644e633f90 286 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 283 4.5E-116 T 12-10-2018 IPR022522 Flagellar motor stator, MotA Alide_3866 4a706face9d46b6ada5abe644e633f90 286 Pfam PF01618 MotA/TolQ/ExbB proton channel family 140 236 9.3E-11 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Alide_3866 4a706face9d46b6ada5abe644e633f90 286 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 207 224 - T 12-10-2018 IPR000540 Flagellar motor protein MotA, conserved site Alide_1260 4141da33c9d302ddd3288cc29b408468 119 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 29 107 1.1E-7 T 12-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative Alide_0864 7ea4bf332ec7f698d9c6b9fb0aa39c1a 162 Pfam PF02470 MlaD protein 39 116 7.7E-22 T 12-10-2018 IPR003399 Mce/MlaD Alide_0864 7ea4bf332ec7f698d9c6b9fb0aa39c1a 162 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 146 6.4E-58 T 12-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 Alide_0226 8af86b810ef316e09f4114a3e6aeb080 111 Pfam PF13663 Domain of unknown function (DUF4148) 9 67 1.7E-12 T 12-10-2018 IPR025421 Protein of unknown function DUF4148 Alide_4106 a5d9f4ad145a55fd477fbc1e3f28c9d7 353 SUPERFAMILY SSF56059 131 310 1.92E-21 T 12-10-2018 Alide_4106 a5d9f4ad145a55fd477fbc1e3f28c9d7 353 Gene3D G3DSA:3.30.470.20 202 311 9.3E-18 T 12-10-2018 Alide_1429 a130380d7a7dd20b7ad37325a583fd93 105 Gene3D G3DSA:2.40.10.270 1 105 4.1E-34 T 12-10-2018 IPR038666 Bacteriophage SPP1, head-tail adaptor superfamily Alide_1429 a130380d7a7dd20b7ad37325a583fd93 105 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 5 102 7.3E-18 T 12-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor Alide_1429 a130380d7a7dd20b7ad37325a583fd93 105 Pfam PF05521 Phage head-tail joining protein 8 101 1.4E-27 T 12-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor Alide_2344 3f0e8a53f6171ed1b6e6154a66c1ca85 164 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 154 7.8E-29 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Alide_2851 c38e486b22f3968ca5993507f4d9e280 372 PRINTS PR00164 ABC-2 type transport system membrane protein signature 294 313 5.5E-5 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_2851 c38e486b22f3968ca5993507f4d9e280 372 PRINTS PR00164 ABC-2 type transport system membrane protein signature 257 281 5.5E-5 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_2851 c38e486b22f3968ca5993507f4d9e280 372 PRINTS PR00164 ABC-2 type transport system membrane protein signature 314 333 5.5E-5 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_2851 c38e486b22f3968ca5993507f4d9e280 372 Pfam PF12698 ABC-2 family transporter protein 32 363 3.4E-36 T 12-10-2018 Alide_3601 1a221d34a92b268c202234be26314817 472 Pfam PF03432 Relaxase/Mobilisation nuclease domain 64 264 2.8E-6 T 12-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 Alide_0972 d9b84f47bf94b70015d4410aea0c8fa3 218 Pfam PF01810 LysE type translocator 16 216 5.7E-36 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Alide_0972 d9b84f47bf94b70015d4410aea0c8fa3 218 PIRSF PIRSF006324 1 218 1.4E-50 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Alide_3444 ae141c6e888cb0505f059de6ae9a183e 54 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 50 19.093 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Alide_3444 ae141c6e888cb0505f059de6ae9a183e 54 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 4.0E-14 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Alide_3444 ae141c6e888cb0505f059de6ae9a183e 54 PIRSF PIRSF036466 1 54 4.2E-21 T 12-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 Alide_1545 7710d8b9fe36aee8798c87e2d7d3cb2d 163 PIRSF PIRSF019239 2 163 1.6E-34 T 12-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Alide_1545 7710d8b9fe36aee8798c87e2d7d3cb2d 163 Pfam PF01899 Na+/H+ ion antiporter subunit 13 161 1.5E-34 T 12-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Alide_1900 221232fe40451336ae73663fcf0bf2f0 173 Pfam PF11454 Protein of unknown function (DUF3016) 31 168 7.6E-45 T 12-10-2018 IPR021557 Protein of unknown function DUF3016 Alide_3676 0133c6220a378f6b5d85e26f6b32eb00 195 Gene3D G3DSA:3.40.50.1820 3 195 6.9E-51 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_3676 0133c6220a378f6b5d85e26f6b32eb00 195 Pfam PF05728 Uncharacterised protein family (UPF0227) 6 192 5.2E-47 T 12-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA Alide_3676 0133c6220a378f6b5d85e26f6b32eb00 195 SUPERFAMILY SSF53474 6 192 8.83E-18 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2701 30c7c85d4878153c99c1f00752a79381 297 SUPERFAMILY SSF161111 16 210 1.96E-52 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Alide_2701 30c7c85d4878153c99c1f00752a79381 297 Pfam PF01545 Cation efflux family 21 208 1.5E-42 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Alide_2701 30c7c85d4878153c99c1f00752a79381 297 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 18 286 3.1E-80 T 12-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Alide_2701 30c7c85d4878153c99c1f00752a79381 297 Gene3D G3DSA:1.20.1510.10 16 209 3.1E-42 T 12-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Alide_2701 30c7c85d4878153c99c1f00752a79381 297 SUPERFAMILY SSF160240 215 285 9.29E-10 T 12-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Alide_3553 f896aab0942d32ad65dc44818214829c 686 Pfam PF05876 Phage terminase large subunit (GpA) 43 611 8.1E-150 T 12-10-2018 IPR008866 Bacteriophage lambda, GpA Alide_4273 b10321326530a86282d47f5d6b216ab1 249 Pfam PF03591 AzlC protein 26 166 4.1E-31 T 12-10-2018 IPR011606 Branched-chain amino acid transport, permease Alide_0999 9958d67ec9eba4fa4bdf076d92ecc6a4 256 SMART SM00382 40 227 1.7E-15 T 12-10-2018 IPR003593 AAA+ ATPase domain Alide_0999 9958d67ec9eba4fa4bdf076d92ecc6a4 256 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 12-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Alide_0999 9958d67ec9eba4fa4bdf076d92ecc6a4 256 SUPERFAMILY SSF52540 15 249 6.56E-81 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0999 9958d67ec9eba4fa4bdf076d92ecc6a4 256 PIRSF PIRSF039085 12 255 1.7E-106 T 12-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Alide_0999 9958d67ec9eba4fa4bdf076d92ecc6a4 256 Pfam PF00005 ABC transporter 31 179 5.9E-34 T 12-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Alide_0999 9958d67ec9eba4fa4bdf076d92ecc6a4 256 Gene3D G3DSA:3.40.50.300 13 256 4.0E-79 T 12-10-2018 Alide_0709 34e11ff3e9cf408c35e0f0d835a6973e 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 4.2E-43 T 12-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 Alide_0709 34e11ff3e9cf408c35e0f0d835a6973e 130 Gene3D G3DSA:3.30.230.10 4 130 1.1E-47 T 12-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Alide_0709 34e11ff3e9cf408c35e0f0d835a6973e 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 30.351 T 12-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid Alide_0709 34e11ff3e9cf408c35e0f0d835a6973e 130 SUPERFAMILY SSF54211 6 130 3.3E-44 T 12-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Alide_0709 34e11ff3e9cf408c35e0f0d835a6973e 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 12-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 Alide_3822 dbdae301b576debb2e1620adb6a32f0e 234 Pfam PF03575 Peptidase family S51 3 205 9.9E-50 T 12-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 Alide_3822 dbdae301b576debb2e1620adb6a32f0e 234 Gene3D G3DSA:3.40.50.880 1 229 2.5E-53 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3822 dbdae301b576debb2e1620adb6a32f0e 234 SUPERFAMILY SSF52317 3 218 1.56E-37 T 12-10-2018 IPR029062 Class I glutamine amidotransferase-like Alide_3068 d31ae090f382528acea7c879ee8b3ee6 401 SUPERFAMILY SSF103473 11 392 7.06E-40 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_3068 d31ae090f382528acea7c879ee8b3ee6 401 Pfam PF07690 Major Facilitator Superfamily 223 389 9.0E-13 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_3068 d31ae090f382528acea7c879ee8b3ee6 401 Pfam PF07690 Major Facilitator Superfamily 22 194 6.6E-12 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_3068 d31ae090f382528acea7c879ee8b3ee6 401 Gene3D G3DSA:1.20.1250.20 10 395 4.3E-36 T 12-10-2018 Alide_0377 db34c0fccf3b2f1592d7d397c599b510 305 Gene3D G3DSA:2.40.10.340 130 280 4.8E-28 T 12-10-2018 Alide_0377 db34c0fccf3b2f1592d7d397c599b510 305 Pfam PF04085 rod shape-determining protein MreC 132 281 6.3E-33 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Alide_0377 db34c0fccf3b2f1592d7d397c599b510 305 PIRSF PIRSF038471 11 295 3.8E-62 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Alide_0377 db34c0fccf3b2f1592d7d397c599b510 305 Gene3D G3DSA:2.40.10.350 189 269 4.8E-28 T 12-10-2018 Alide_0377 db34c0fccf3b2f1592d7d397c599b510 305 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 21 286 7.2E-36 T 12-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Alide_3560 ec72e0ab3871461700546bc825387e5f 230 SMART SM00470 4 89 5.0E-7 T 12-10-2018 IPR003115 ParB/Sulfiredoxin Alide_3560 ec72e0ab3871461700546bc825387e5f 230 Pfam PF02195 ParB-like nuclease domain 6 76 6.7E-7 T 12-10-2018 IPR003115 ParB/Sulfiredoxin Alide_3560 ec72e0ab3871461700546bc825387e5f 230 SUPERFAMILY SSF110849 3 160 5.41E-16 T 12-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Alide_3416 4d5c4b46f38127175f6d2c88b8e2e52e 71 Pfam PF11943 Protein of unknown function (DUF3460) 8 64 1.3E-27 T 12-10-2018 IPR021853 Protein of unknown function DUF3460 Alide_2625 8a4be471aa21f90a814cebc1cf54a719 212 Pfam PF01618 MotA/TolQ/ExbB proton channel family 66 196 3.0E-31 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Alide_1198 9f631ded314d0dbf2ea720137c6c5a1d 198 Gene3D G3DSA:2.40.160.20 27 198 8.1E-32 T 12-10-2018 Alide_1198 9f631ded314d0dbf2ea720137c6c5a1d 198 SUPERFAMILY SSF56925 39 197 1.28E-20 T 12-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Alide_1198 9f631ded314d0dbf2ea720137c6c5a1d 198 Pfam PF13505 Outer membrane protein beta-barrel domain 20 198 8.5E-13 T 12-10-2018 IPR027385 Outer membrane protein beta-barrel Alide_1608 e05b66cdced17c72fe69f6e37770b596 319 PIRSF PIRSF017082 2 318 1.9E-78 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1608 e05b66cdced17c72fe69f6e37770b596 319 SUPERFAMILY SSF53850 98 281 5.09E-18 T 12-10-2018 Alide_1608 e05b66cdced17c72fe69f6e37770b596 319 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 315 6.7E-81 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_1608 e05b66cdced17c72fe69f6e37770b596 319 Gene3D G3DSA:3.40.190.10 125 244 3.0E-105 T 12-10-2018 Alide_1608 e05b66cdced17c72fe69f6e37770b596 319 Gene3D G3DSA:3.40.190.150 27 308 3.0E-105 T 12-10-2018 Alide_3732 f3ca0059e65fe35d35946ceb1ed5a048 231 Gene3D G3DSA:3.30.450.40 46 230 2.5E-52 T 12-10-2018 IPR029016 GAF-like domain superfamily Alide_3732 f3ca0059e65fe35d35946ceb1ed5a048 231 Pfam PF04340 Protein of unknown function, DUF484 11 229 3.7E-29 T 12-10-2018 IPR007435 Protein of unknown function DUF484 Alide_3441 7ce4063b275ed8f7841cc4740aeaa6db 139 Gene3D G3DSA:3.40.50.2300 2 131 3.9E-15 T 12-10-2018 Alide_3441 7ce4063b275ed8f7841cc4740aeaa6db 139 SMART SM00448 3 118 2.1E-10 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3441 7ce4063b275ed8f7841cc4740aeaa6db 139 Pfam PF00072 Response regulator receiver domain 7 116 2.0E-11 T 12-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Alide_3441 7ce4063b275ed8f7841cc4740aeaa6db 139 SUPERFAMILY SSF52172 3 118 1.71E-17 T 12-10-2018 IPR011006 CheY-like superfamily Alide_3256 217d348f746fd883169c5dcfe3900f63 379 Pfam PF05175 Methyltransferase small domain 202 316 6.2E-10 T 12-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Alide_3256 217d348f746fd883169c5dcfe3900f63 379 Gene3D G3DSA:3.40.50.150 188 354 4.7E-27 T 12-10-2018 Alide_3256 217d348f746fd883169c5dcfe3900f63 379 SUPERFAMILY SSF53335 160 316 1.04E-29 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0614 24fb2569b0009860956b3968440b03c4 227 SMART SM00702 1 177 1.7E-21 T 12-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 Alide_0614 24fb2569b0009860956b3968440b03c4 227 Gene3D G3DSA:2.60.120.620 1 178 1.6E-42 T 12-10-2018 Alide_0614 24fb2569b0009860956b3968440b03c4 227 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 227 44.558 T 12-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 Alide_0614 24fb2569b0009860956b3968440b03c4 227 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 83 176 2.4E-15 T 12-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 Alide_0614 24fb2569b0009860956b3968440b03c4 227 Gene3D G3DSA:4.10.860.20 180 226 1.3E-17 T 12-10-2018 Alide_0614 24fb2569b0009860956b3968440b03c4 227 SUPERFAMILY SSF51197 5 175 4.81E-8 T 12-10-2018 Alide_4358 91bf7cd5ef96bf3008c4fd0f974f9da1 494 Pfam PF13785 Domain of unknown function (DUF4178) 65 202 8.5E-20 T 12-10-2018 IPR025235 Domain of unknown function DUF4178 Alide_4358 91bf7cd5ef96bf3008c4fd0f974f9da1 494 Pfam PF13785 Domain of unknown function (DUF4178) 276 416 1.1E-26 T 12-10-2018 IPR025235 Domain of unknown function DUF4178 Alide_0870 71085f02db9c9d400b23dd6cb04847fa 251 Pfam PF01061 ABC-2 type transporter 4 214 1.0E-33 T 12-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Alide_0870 71085f02db9c9d400b23dd6cb04847fa 251 PRINTS PR00164 ABC-2 type transport system membrane protein signature 53 75 8.3E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_0870 71085f02db9c9d400b23dd6cb04847fa 251 PRINTS PR00164 ABC-2 type transport system membrane protein signature 171 190 8.3E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_0870 71085f02db9c9d400b23dd6cb04847fa 251 PRINTS PR00164 ABC-2 type transport system membrane protein signature 191 210 8.3E-11 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_0870 71085f02db9c9d400b23dd6cb04847fa 251 PIRSF PIRSF006648 5 248 2.3E-21 T 12-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 Alide_1407 4c5063169dc67b64a399d8c817c359fb 136 Pfam PF04138 GtrA-like protein 16 130 1.5E-17 T 12-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 Alide_4331 992db27097977905a44bad9df9372bd1 122 Pfam PF13670 Peptidase propeptide and YPEB domain 8 86 1.1E-25 T 12-10-2018 IPR025711 PepSY domain Alide_2080 9593c8a55c2c00d0dc18db1c72e335d4 187 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 24 116 2.7E-12 T 12-10-2018 IPR006522 Phage virion morphogensis protein Alide_2080 9593c8a55c2c00d0dc18db1c72e335d4 187 Pfam PF05069 Phage virion morphogenesis family 14 181 1.2E-33 T 12-10-2018 IPR006522 Phage virion morphogensis protein Alide_0280 920cf3d294f9c5778491fc3cf6fc3ede 448 Pfam PF03972 MmgE/PrpD family 10 436 8.2E-117 T 12-10-2018 IPR005656 MmgE/PrpD GO:0016829 Alide_0280 920cf3d294f9c5778491fc3cf6fc3ede 448 Gene3D G3DSA:3.30.1330.120 270 401 3.9E-104 T 12-10-2018 Alide_0280 920cf3d294f9c5778491fc3cf6fc3ede 448 Gene3D G3DSA:1.10.4100.10 28 418 3.9E-104 T 12-10-2018 Alide_0280 920cf3d294f9c5778491fc3cf6fc3ede 448 SUPERFAMILY SSF103378 7 444 2.09E-103 T 12-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Alide_0447 221b70f61db4d496400377615478ab34 201 SUPERFAMILY SSF140478 22 179 8.76E-51 T 12-10-2018 IPR023353 LemA-like domain superfamily Alide_0447 221b70f61db4d496400377615478ab34 201 Gene3D G3DSA:1.20.1440.20 13 192 1.5E-57 T 12-10-2018 IPR023353 LemA-like domain superfamily Alide_0447 221b70f61db4d496400377615478ab34 201 Pfam PF04011 LemA family 8 192 9.7E-62 T 12-10-2018 IPR007156 LemA Alide_0385 c19655435150d6ea8e4eb86d1e16996a 325 Pfam PF02470 MlaD protein 44 112 1.7E-11 T 12-10-2018 IPR003399 Mce/MlaD Alide_4440 6557984962b035c75263107c00c1de02 176 Pfam PF10959 Protein of unknown function (DUF2761) 7 96 5.7E-55 T 12-10-2018 IPR024249 Protein of unknown function DUF2761 Alide_4440 6557984962b035c75263107c00c1de02 176 ProDom PD029589 PLASMID KLEF KCRB4 STABLE INHERITANCE INITIATION ALTERNATIVE 7 102 4.0E-51 T 12-10-2018 IPR024249 Protein of unknown function DUF2761 Alide_2836 0039c7830505b46b82f8f5cc678f77c2 154 SUPERFAMILY SSF47598 4 42 3.22E-6 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Alide_2836 0039c7830505b46b82f8f5cc678f77c2 154 Pfam PF01402 Ribbon-helix-helix protein, copG family 10 41 7.1E-5 T 12-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 Alide_4119 736d81c6acbdb4d88f7547a7cce3c198 217 Pfam PF01618 MotA/TolQ/ExbB proton channel family 99 203 1.4E-31 T 12-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Alide_3985 3ad05154173bdbf45ce70d2670f29dce 293 SUPERFAMILY SSF103481 48 149 1.1E-9 T 12-10-2018 Alide_3985 3ad05154173bdbf45ce70d2670f29dce 293 Pfam PF00892 EamA-like transporter family 154 280 2.9E-6 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_3985 3ad05154173bdbf45ce70d2670f29dce 293 Pfam PF00892 EamA-like transporter family 13 145 3.3E-8 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_3985 3ad05154173bdbf45ce70d2670f29dce 293 SUPERFAMILY SSF103481 191 286 1.11E-9 T 12-10-2018 Alide_3548 dbb147a03f3f2d1952f1a8fc9e5078a1 128 Pfam PF02924 Bacteriophage lambda head decoration protein D 4 125 4.3E-34 T 12-10-2018 IPR004195 Head decoration protein D Alide_1566 810011ed1b18d2680983cd59a55ffcc7 220 Gene3D G3DSA:1.10.3720.10 6 218 3.0E-37 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1566 810011ed1b18d2680983cd59a55ffcc7 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 109 1.4E-19 T 12-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Alide_1566 810011ed1b18d2680983cd59a55ffcc7 220 SUPERFAMILY SSF161098 13 201 2.35E-32 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1566 810011ed1b18d2680983cd59a55ffcc7 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 217 1.0E-16 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_2362 3fa35f97fa89695b2860b7075fa3f916 259 Gene3D G3DSA:3.90.226.10 3 201 1.2E-65 T 12-10-2018 Alide_2362 3fa35f97fa89695b2860b7075fa3f916 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 258 1.2E-52 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_2362 3fa35f97fa89695b2860b7075fa3f916 259 Gene3D G3DSA:1.10.12.10 202 259 3.0E-21 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_2362 3fa35f97fa89695b2860b7075fa3f916 259 SUPERFAMILY SSF52096 4 258 1.87E-77 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3888 6c73f3a7a943a4caf2d1265b0fbe5de7 416 SUPERFAMILY SSF64518 5 415 3.79E-63 T 12-10-2018 Alide_3888 6c73f3a7a943a4caf2d1265b0fbe5de7 416 Gene3D G3DSA:1.20.1330.10 44 229 6.0E-26 T 12-10-2018 Alide_3888 6c73f3a7a943a4caf2d1265b0fbe5de7 416 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 6 415 8.8E-59 T 12-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 Alide_3888 6c73f3a7a943a4caf2d1265b0fbe5de7 416 Pfam PF00669 Bacterial flagellin N-terminal helical region 7 141 3.8E-21 T 12-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Alide_2191 f54df6cb6664dc756c4c93fa2a14f8e9 286 Gene3D G3DSA:3.30.565.10 146 285 1.4E-22 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2191 f54df6cb6664dc756c4c93fa2a14f8e9 286 SUPERFAMILY SSF55874 150 284 6.02E-14 T 12-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Alide_2191 f54df6cb6664dc756c4c93fa2a14f8e9 286 SMART SM00387 187 286 2.5E-6 T 12-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Alide_2191 f54df6cb6664dc756c4c93fa2a14f8e9 286 Pfam PF07730 Histidine kinase 91 115 4.0E-5 T 12-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Alide_3700 805444fd5dfc79de0b9bf90030edd9bf 399 Gene3D G3DSA:2.40.110.10 137 248 2.5E-43 T 12-10-2018 Alide_3700 805444fd5dfc79de0b9bf90030edd9bf 399 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 140 152 - T 12-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Alide_3700 805444fd5dfc79de0b9bf90030edd9bf 399 SUPERFAMILY SSF47203 242 395 5.15E-48 T 12-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 Alide_3700 805444fd5dfc79de0b9bf90030edd9bf 399 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 243 392 2.6E-43 T 12-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Alide_3700 805444fd5dfc79de0b9bf90030edd9bf 399 Gene3D G3DSA:1.10.540.10 14 136 9.0E-24 T 12-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 Alide_3700 805444fd5dfc79de0b9bf90030edd9bf 399 Gene3D G3DSA:1.20.140.10 249 396 9.2E-44 T 12-10-2018 Alide_3700 805444fd5dfc79de0b9bf90030edd9bf 399 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 138 231 4.5E-22 T 12-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 Alide_3700 805444fd5dfc79de0b9bf90030edd9bf 399 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 21 133 7.3E-12 T 12-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 Alide_3700 805444fd5dfc79de0b9bf90030edd9bf 399 SUPERFAMILY SSF56645 17 254 6.68E-59 T 12-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 Alide_2345 ebb1ed6849d221db372234c4a32d5b50 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 413 1.0E-118 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Alide_2345 ebb1ed6849d221db372234c4a32d5b50 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 18 418 1.9E-135 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_2345 ebb1ed6849d221db372234c4a32d5b50 425 PIRSF PIRSF006066 1 425 2.6E-167 T 12-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Alide_3106 9c15f6f0c8dfbec9789410dc27fcf9d4 319 Gene3D G3DSA:3.20.20.370 2 318 9.4E-98 T 12-10-2018 Alide_3106 9c15f6f0c8dfbec9789410dc27fcf9d4 319 SUPERFAMILY SSF88713 9 315 3.06E-78 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Alide_3106 9c15f6f0c8dfbec9789410dc27fcf9d4 319 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 9 315 2.2E-147 T 12-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 Alide_3106 9c15f6f0c8dfbec9789410dc27fcf9d4 319 Pfam PF01522 Polysaccharide deacetylase 79 178 1.0E-7 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Alide_4305 1765c61082516441a27829f2575e5d3b 395 SUPERFAMILY SSF54862 32 83 2.37E-6 T 12-10-2018 Alide_4305 1765c61082516441a27829f2575e5d3b 395 TIGRFAM TIGR02484 CitB: CitB domain protein 22 386 1.3E-118 T 12-10-2018 IPR012830 Citrate utilization protein B Alide_4305 1765c61082516441a27829f2575e5d3b 395 SUPERFAMILY SSF103501 172 386 1.1E-25 T 12-10-2018 IPR036197 NarG-like superfamily Alide_2595 04057a37e64182ab8d29bf39227e81c0 268 SUPERFAMILY SSF51182 16 253 2.8E-61 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_2595 04057a37e64182ab8d29bf39227e81c0 268 Gene3D G3DSA:2.60.120.10 125 268 5.6E-56 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_2595 04057a37e64182ab8d29bf39227e81c0 268 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 19 264 6.3E-93 T 12-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 Alide_2595 04057a37e64182ab8d29bf39227e81c0 268 Gene3D G3DSA:2.60.120.10 15 124 2.1E-29 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_2595 04057a37e64182ab8d29bf39227e81c0 268 PIRSF PIRSF036628 3 268 1.9E-97 T 12-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 Alide_2595 04057a37e64182ab8d29bf39227e81c0 268 Pfam PF04962 KduI/IolB family 8 264 9.1E-102 T 12-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Alide_2734 5f95f08fb53bb5e9038a9e54043fbc22 215 Gene3D G3DSA:1.20.120.1630 8 209 6.4E-21 T 12-10-2018 Alide_2734 5f95f08fb53bb5e9038a9e54043fbc22 215 Pfam PF04191 Phospholipid methyltransferase 127 193 8.6E-8 T 12-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 Alide_4569 00afa3fcc6bd3846f83246abd3576dba 243 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 41 178 6.6E-5 T 12-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system Alide_3035 a211bedf5d4748c6258aa5552cf6d382 226 PIRSF PIRSF006170 3 215 8.4E-53 T 12-10-2018 IPR026039 Uncharacterised protein family UPF0070 Alide_3035 a211bedf5d4748c6258aa5552cf6d382 226 Pfam PF09976 Tetratricopeptide repeat-like domain 17 210 5.5E-53 T 12-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 Alide_4189 10058e617f85ae5290961111b2db8ca8 248 Pfam PF03942 DTW domain 29 223 2.2E-40 T 12-10-2018 IPR005636 DTW Alide_4189 10058e617f85ae5290961111b2db8ca8 248 SMART SM01144 27 229 3.4E-74 T 12-10-2018 IPR005636 DTW Alide_1200 1b0b798235f9fbd153053b210300ec5d 336 Pfam PF01384 Phosphate transporter family 25 325 1.7E-89 T 12-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 Alide_1621 7be6e57ff1f16000ff4d49a4f6e892e8 331 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 6 329 1.2E-80 T 12-10-2018 IPR003770 Endolytic murein transglycosylase Alide_1621 7be6e57ff1f16000ff4d49a4f6e892e8 331 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 5 330 33.495 T 12-10-2018 IPR003770 Endolytic murein transglycosylase Alide_1621 7be6e57ff1f16000ff4d49a4f6e892e8 331 Pfam PF02618 YceG-like family 42 326 9.5E-81 T 12-10-2018 IPR003770 Endolytic murein transglycosylase Alide_1621 7be6e57ff1f16000ff4d49a4f6e892e8 331 Gene3D G3DSA:3.30.160.60 302 331 3.0E-9 T 12-10-2018 Alide_3501 e800999b654390ff3e90a4143d9030dc 333 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 62 328 7.4E-54 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3501 e800999b654390ff3e90a4143d9030dc 333 Gene3D G3DSA:3.40.190.150 42 324 2.3E-80 T 12-10-2018 Alide_3501 e800999b654390ff3e90a4143d9030dc 333 SUPERFAMILY SSF53850 128 294 1.76E-8 T 12-10-2018 Alide_3501 e800999b654390ff3e90a4143d9030dc 333 PIRSF PIRSF017082 9 333 4.7E-63 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_3501 e800999b654390ff3e90a4143d9030dc 333 Gene3D G3DSA:3.40.190.10 139 259 2.3E-80 T 12-10-2018 Alide_2085 cf28efcb9f8442c744c236a70d37710c 178 Pfam PF07030 Protein of unknown function (DUF1320) 3 161 2.4E-27 T 12-10-2018 IPR009752 Bacteriophage Mu, Gp36 Alide_1310 df0be926c26e26c1515d43c175c4e0bb 282 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 122 129 - T 12-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Alide_1310 df0be926c26e26c1515d43c175c4e0bb 282 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 19 246 4.8E-56 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Alide_1310 df0be926c26e26c1515d43c175c4e0bb 282 Gene3D G3DSA:3.90.550.10 13 252 2.0E-62 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_1310 df0be926c26e26c1515d43c175c4e0bb 282 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 17 246 40.672 T 12-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Alide_1310 df0be926c26e26c1515d43c175c4e0bb 282 SUPERFAMILY SSF53448 18 246 6.81E-48 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_1310 df0be926c26e26c1515d43c175c4e0bb 282 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 20 247 6.1E-50 T 12-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Alide_3078 a51b8caa3a4ad1bbbc2365a039ec9908 873 SMART SM00900 98 192 1.7E-12 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Alide_3078 a51b8caa3a4ad1bbbc2365a039ec9908 873 SUPERFAMILY SSF54862 505 675 1.55E-8 T 12-10-2018 Alide_3078 a51b8caa3a4ad1bbbc2365a039ec9908 873 Pfam PF12801 4Fe-4S binding domain 597 628 1.4E-5 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3078 a51b8caa3a4ad1bbbc2365a039ec9908 873 Pfam PF12801 4Fe-4S binding domain 493 538 2.8E-14 T 12-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Alide_3078 a51b8caa3a4ad1bbbc2365a039ec9908 873 Pfam PF04205 FMN-binding domain 102 184 4.8E-5 T 12-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Alide_3078 a51b8caa3a4ad1bbbc2365a039ec9908 873 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 645 656 - T 12-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Alide_0233 65d2ba58265986b27a35c5da2468a35d 660 Pfam PF11843 Protein of unknown function (DUF3363) 286 657 1.5E-142 T 12-10-2018 IPR021795 Protein of unknown function DUF3363 Alide_3867 448478218358594b4db7d817bbff064a 312 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 14 65 1.1E-17 T 12-10-2018 IPR025713 Motility protein B, N-terminal domain Alide_3867 448478218358594b4db7d817bbff064a 312 Pfam PF00691 OmpA family 171 264 1.5E-12 T 12-10-2018 IPR006665 OmpA-like domain Alide_3867 448478218358594b4db7d817bbff064a 312 Gene3D G3DSA:3.30.1330.60 118 300 2.8E-55 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_3867 448478218358594b4db7d817bbff064a 312 SUPERFAMILY SSF103088 157 275 3.79E-19 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_0984 f182b875c053d9cb2fe8ca592746f465 165 Gene3D G3DSA:2.50.20.10 30 158 6.6E-16 T 12-10-2018 Alide_0984 f182b875c053d9cb2fe8ca592746f465 165 SUPERFAMILY SSF89392 24 137 3.02E-19 T 12-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Alide_0984 f182b875c053d9cb2fe8ca592746f465 165 Pfam PF03550 Outer membrane lipoprotein LolB 38 149 8.5E-18 T 12-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 Alide_4510 cfb2ab658c69995fb1b4bd2ae6ac97b8 124 Pfam PF07883 Cupin domain 42 111 9.3E-13 T 12-10-2018 IPR013096 Cupin 2, conserved barrel Alide_4510 cfb2ab658c69995fb1b4bd2ae6ac97b8 124 Gene3D G3DSA:2.60.120.10 4 124 2.5E-35 T 12-10-2018 IPR014710 RmlC-like jelly roll fold Alide_4510 cfb2ab658c69995fb1b4bd2ae6ac97b8 124 SUPERFAMILY SSF51182 30 119 1.78E-18 T 12-10-2018 IPR011051 RmlC-like cupin domain superfamily Alide_1670 f9053763d4ef457233b5ea7c336e52bd 167 SUPERFAMILY SSF54060 19 141 8.24E-5 T 12-10-2018 Alide_4590 ae2852870afcc22465a56f150c4bf734 78 Pfam PF11811 Domain of unknown function (DUF3331) 6 78 2.1E-10 T 12-10-2018 IPR021769 Protein of unknown function DUF3331 Alide_0977 1771384a60c6bad83cc27d7ef077b4e6 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 284 2.5E-34 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0977 1771384a60c6bad83cc27d7ef077b4e6 287 Gene3D G3DSA:1.10.3720.10 73 279 6.0E-25 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0977 1771384a60c6bad83cc27d7ef077b4e6 287 SUPERFAMILY SSF161098 78 265 5.49E-28 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0634 247f317cbf9c85ccdf0cc0deba7b5fff 191 Pfam PF08645 Polynucleotide kinase 3 phosphatase 2 114 1.8E-6 T 12-10-2018 IPR013954 Polynucleotide kinase 3 phosphatase Reactome: R-HSA-5649702 Alide_0634 247f317cbf9c85ccdf0cc0deba7b5fff 191 PIRSF PIRSF004682 1 158 4.8E-41 T 12-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 Alide_0634 247f317cbf9c85ccdf0cc0deba7b5fff 191 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 142 1.6E-35 T 12-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 Alide_0634 247f317cbf9c85ccdf0cc0deba7b5fff 191 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 2 140 1.3E-25 T 12-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 Alide_0634 247f317cbf9c85ccdf0cc0deba7b5fff 191 SUPERFAMILY SSF56784 1 156 1.18E-38 T 12-10-2018 IPR036412 HAD-like superfamily Alide_0634 247f317cbf9c85ccdf0cc0deba7b5fff 191 Gene3D G3DSA:3.40.50.1000 1 159 1.3E-42 T 12-10-2018 IPR023214 HAD superfamily Alide_0472 e333a6c261706035cadcda2292fd0fe4 309 Pfam PF06114 IrrE N-terminal-like domain 76 179 1.9E-22 T 12-10-2018 IPR010359 IrrE N-terminal-like domain Alide_0472 e333a6c261706035cadcda2292fd0fe4 309 Gene3D G3DSA:3.40.390.50 61 141 4.6E-11 T 12-10-2018 Alide_1255 12e55cc6288e370c3d9677cc1792bd29 337 Pfam PF05954 Phage late control gene D protein (GPD) 88 320 3.1E-27 T 12-10-2018 Alide_1255 12e55cc6288e370c3d9677cc1792bd29 337 SUPERFAMILY SSF69279 12 184 1.74E-26 T 12-10-2018 Alide_1508 0c2a17734afec424eba64eb9f22918c5 223 Pfam PF05433 Glycine zipper 2TM domain 57 97 3.3E-7 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 Alide_1917 0059f4f5d0bf0cc822020f9afe76e686 195 Pfam PF04366 Las17-binding protein actin regulator 108 192 1.0E-14 T 12-10-2018 IPR007461 Ysc84 actin-binding domain Alide_0081 0c0fbcc7e83381682b08b2d4ef0299f2 301 SUPERFAMILY SSF46785 2 110 4.49E-20 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0081 0c0fbcc7e83381682b08b2d4ef0299f2 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 1.1E-15 T 12-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Alide_0081 0c0fbcc7e83381682b08b2d4ef0299f2 301 SUPERFAMILY SSF53850 92 295 1.63E-38 T 12-10-2018 Alide_0081 0c0fbcc7e83381682b08b2d4ef0299f2 301 Gene3D G3DSA:3.40.190.290 93 299 1.3E-31 T 12-10-2018 Alide_0081 0c0fbcc7e83381682b08b2d4ef0299f2 301 Gene3D G3DSA:1.10.10.10 1 92 4.9E-20 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_0081 0c0fbcc7e83381682b08b2d4ef0299f2 301 Pfam PF03466 LysR substrate binding domain 92 292 3.7E-34 T 12-10-2018 IPR005119 LysR, substrate-binding Alide_0282 27e46ec7c588c2a5db3df0f55951b7ac 324 Gene3D G3DSA:3.40.190.10 126 249 2.5E-112 T 12-10-2018 Alide_0282 27e46ec7c588c2a5db3df0f55951b7ac 324 PIRSF PIRSF017082 1 324 2.5E-85 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0282 27e46ec7c588c2a5db3df0f55951b7ac 324 SUPERFAMILY SSF53850 114 278 3.91E-12 T 12-10-2018 Alide_0282 27e46ec7c588c2a5db3df0f55951b7ac 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 319 4.6E-86 T 12-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Alide_0282 27e46ec7c588c2a5db3df0f55951b7ac 324 Gene3D G3DSA:3.40.190.150 29 314 2.5E-112 T 12-10-2018 Alide_2305 e17b0c183079560dd76b9176dff83e71 112 SMART SM00418 14 91 6.2E-24 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_2305 e17b0c183079560dd76b9176dff83e71 112 SUPERFAMILY SSF46785 6 90 1.64E-26 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_2305 e17b0c183079560dd76b9176dff83e71 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 16 31 6.2E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_2305 e17b0c183079560dd76b9176dff83e71 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 6.2E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_2305 e17b0c183079560dd76b9176dff83e71 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 6.2E-12 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_2305 e17b0c183079560dd76b9176dff83e71 112 Gene3D G3DSA:1.10.10.10 1 108 2.3E-28 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_2305 e17b0c183079560dd76b9176dff83e71 112 Pfam PF01022 Bacterial regulatory protein, arsR family 22 65 1.1E-13 T 12-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Alide_3889 4dc1f909c914013f87dd3d89e658aff5 404 Gene3D G3DSA:1.10.3210.10 185 356 5.2E-15 T 12-10-2018 Alide_3889 4dc1f909c914013f87dd3d89e658aff5 404 SUPERFAMILY SSF109604 198 394 1.19E-24 T 12-10-2018 Alide_3889 4dc1f909c914013f87dd3d89e658aff5 404 Pfam PF08668 HDOD domain 201 322 7.4E-7 T 12-10-2018 IPR013976 Metal-dependent hydrolase HDOD Alide_4345 c56cc46c7a52229b4ea89d414280f592 333 Gene3D G3DSA:3.40.50.720 129 295 1.2E-97 T 12-10-2018 Alide_4345 c56cc46c7a52229b4ea89d414280f592 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 91 1.8E-4 T 12-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Alide_4345 c56cc46c7a52229b4ea89d414280f592 333 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 7 328 2.5E-100 T 12-10-2018 IPR014188 Acrylyl-CoA reductase AcuI Alide_4345 c56cc46c7a52229b4ea89d414280f592 333 SMART SM00829 19 327 1.7E-4 T 12-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Alide_4345 c56cc46c7a52229b4ea89d414280f592 333 Gene3D G3DSA:3.90.180.10 21 327 1.2E-97 T 12-10-2018 Alide_4345 c56cc46c7a52229b4ea89d414280f592 333 Pfam PF00107 Zinc-binding dehydrogenase 162 277 5.0E-8 T 12-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Alide_4345 c56cc46c7a52229b4ea89d414280f592 333 SUPERFAMILY SSF51735 120 284 2.58E-30 T 12-10-2018 IPR036291 NAD(P)-binding domain superfamily Alide_4345 c56cc46c7a52229b4ea89d414280f592 333 SUPERFAMILY SSF50129 5 146 5.63E-36 T 12-10-2018 IPR011032 GroES-like superfamily Alide_1863 d1540022ab3d64b84e6bcc278da9b391 128 SUPERFAMILY SSF109709 43 103 2.09E-7 T 12-10-2018 Alide_2536 4fff172109719b8496cac71fed1ce0ae 150 SUPERFAMILY SSF54593 1 145 1.5E-33 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2536 4fff172109719b8496cac71fed1ce0ae 150 Gene3D G3DSA:3.10.180.10 7 150 3.0E-45 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2536 4fff172109719b8496cac71fed1ce0ae 150 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 2 144 1.6E-7 T 12-10-2018 IPR028973 PhnB-like Alide_1270 801f35a722a32af2e0221c7b73d96675 116 Pfam PF04965 Gene 25-like lysozyme 13 96 3.6E-17 T 12-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Alide_1270 801f35a722a32af2e0221c7b73d96675 116 Gene3D G3DSA:3.10.450.40 2 110 2.7E-21 T 12-10-2018 Alide_1270 801f35a722a32af2e0221c7b73d96675 116 SUPERFAMILY SSF160719 6 98 4.32E-28 T 12-10-2018 Alide_4221 2638823360668bcc39395b1d011a8daf 179 SUPERFAMILY SSF109604 4 78 8.94E-9 T 12-10-2018 Alide_4221 2638823360668bcc39395b1d011a8daf 179 TIGRFAM TIGR03276 Phn-HD: phosphonate degradation operons associated HDIG domain protein 5 174 3.8E-70 T 12-10-2018 IPR017670 Phosphonate degradation operon associated HDIG domain protein Alide_4221 2638823360668bcc39395b1d011a8daf 179 Gene3D G3DSA:1.10.3210.10 2 179 3.1E-53 T 12-10-2018 Alide_0168 6b72157c46e44030720290a2bdb21999 402 PIRSF PIRSF000429 1 402 3.5E-132 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_0168 6b72157c46e44030720290a2bdb21999 402 Pfam PF00108 Thiolase, N-terminal domain 5 267 3.1E-70 T 12-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Alide_0168 6b72157c46e44030720290a2bdb21999 402 SUPERFAMILY SSF53901 275 401 2.21E-43 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0168 6b72157c46e44030720290a2bdb21999 402 Gene3D G3DSA:3.40.47.10 6 280 3.6E-144 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0168 6b72157c46e44030720290a2bdb21999 402 Gene3D G3DSA:3.40.47.10 126 398 3.6E-144 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0168 6b72157c46e44030720290a2bdb21999 402 SUPERFAMILY SSF53901 4 274 3.64E-77 T 12-10-2018 IPR016039 Thiolase-like GO:0003824 Alide_0168 6b72157c46e44030720290a2bdb21999 402 Pfam PF02803 Thiolase, C-terminal domain 275 401 5.8E-44 T 12-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Alide_0168 6b72157c46e44030720290a2bdb21999 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 400 2.8E-133 T 12-10-2018 IPR002155 Thiolase GO:0016747 Alide_0337 e4065d6e66948f0487f5cb9060645bc5 260 TIGRFAM TIGR03220 catechol_dmpE: 2-oxopent-4-enoate hydratase 6 259 3.0E-143 T 12-10-2018 IPR017632 2-oxopent-4-enoate hydratase Alide_0337 e4065d6e66948f0487f5cb9060645bc5 260 Gene3D G3DSA:3.90.850.10 2 260 1.7E-87 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_0337 e4065d6e66948f0487f5cb9060645bc5 260 SUPERFAMILY SSF56529 1 260 6.8E-86 T 12-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Alide_0337 e4065d6e66948f0487f5cb9060645bc5 260 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 95 258 3.4E-13 T 12-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Alide_2866 7af3a4c60dad0798567bd300f45b59fc 136 Pfam PF13670 Peptidase propeptide and YPEB domain 12 88 4.5E-28 T 12-10-2018 IPR025711 PepSY domain Alide_1787 f7786a4e9f0253e97e19a8a12e65d1fd 158 Pfam PF08239 Bacterial SH3 domain 106 153 6.5E-12 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type Alide_1787 f7786a4e9f0253e97e19a8a12e65d1fd 158 Gene3D G3DSA:2.30.30.40 93 156 8.4E-15 T 12-10-2018 Alide_1787 f7786a4e9f0253e97e19a8a12e65d1fd 158 Gene3D G3DSA:2.30.30.40 30 92 9.6E-9 T 12-10-2018 Alide_1787 f7786a4e9f0253e97e19a8a12e65d1fd 158 Pfam PF06347 Bacterial SH3 domain 40 93 1.3E-10 T 12-10-2018 IPR010466 Protein of unknown function DUF1058 Alide_1787 f7786a4e9f0253e97e19a8a12e65d1fd 158 SMART SM00287 99 158 6.8E-6 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type Alide_1787 f7786a4e9f0253e97e19a8a12e65d1fd 158 SMART SM00287 34 97 0.1 T 12-10-2018 IPR003646 SH3-like domain, bacterial-type Alide_3164 a345531522cb34634cf6b7443a2bfe43 419 Pfam PF02653 Branched-chain amino acid transport system / permease component 115 401 1.3E-51 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3164 a345531522cb34634cf6b7443a2bfe43 419 Pfam PF11862 Domain of unknown function (DUF3382) 15 106 2.5E-17 T 12-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal Alide_0193 2e752a85fb40d13906225f4990d8ecd7 604 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 8 351 8.8E-114 T 12-10-2018 IPR010839 Acyclic terpene utilisation Alide_0033 b213692daf1cf8b521aef946e2edf4ad 83 Pfam PF11730 Protein of unknown function (DUF3297) 10 82 8.2E-35 T 12-10-2018 IPR021724 Protein of unknown function DUF3297 Alide_4615 bfebd90ebb7f0b14562516d2d3acb0a9 285 Gene3D G3DSA:3.30.70.3420 117 263 1.5E-31 T 12-10-2018 Alide_4615 bfebd90ebb7f0b14562516d2d3acb0a9 285 SUPERFAMILY SSF54909 51 282 8.31E-54 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_4615 bfebd90ebb7f0b14562516d2d3acb0a9 285 Pfam PF06778 Chlorite dismutase 76 270 3.2E-33 T 12-10-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase Alide_0289 208555f25da9213a72c57bbdadf77803 425 Pfam PF07690 Major Facilitator Superfamily 9 342 4.9E-14 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_0289 208555f25da9213a72c57bbdadf77803 425 Gene3D G3DSA:1.20.1250.20 1 401 1.3E-23 T 12-10-2018 Alide_0289 208555f25da9213a72c57bbdadf77803 425 SUPERFAMILY SSF103473 3 407 1.83E-25 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_3564 7b213a8478aec5c7593b3698b216e07c 182 Pfam PF06892 Phage regulatory protein CII (CP76) 43 131 1.3E-6 T 12-10-2018 IPR009679 Bacteriophage 186, CII Alide_1099 9cdad52ded67cbd0d89c5662591e1c5c 374 Gene3D G3DSA:1.10.10.2510 212 371 5.4E-13 T 12-10-2018 Alide_1099 9cdad52ded67cbd0d89c5662591e1c5c 374 SMART SM00558 100 222 2.3E-4 T 12-10-2018 IPR003347 JmjC domain Alide_1099 9cdad52ded67cbd0d89c5662591e1c5c 374 Pfam PF08007 Cupin superfamily protein 15 285 8.2E-85 T 12-10-2018 IPR003347 JmjC domain Alide_1099 9cdad52ded67cbd0d89c5662591e1c5c 374 SUPERFAMILY SSF51197 7 293 1.1E-73 T 12-10-2018 Alide_1099 9cdad52ded67cbd0d89c5662591e1c5c 374 Gene3D G3DSA:2.60.120.650 1 211 3.9E-81 T 12-10-2018 Alide_3002 729f0ebc598329dab861f1f9c83feb87 176 Pfam PF11445 Protein of unknown function (DUF2894) 1 149 2.0E-42 T 12-10-2018 IPR021549 Protein of unknown function DUF2894 Alide_2749 7ecbf400ebeb2336a197ccaf9fc96996 356 SUPERFAMILY SSF103481 207 291 6.8E-8 T 12-10-2018 Alide_2749 7ecbf400ebeb2336a197ccaf9fc96996 356 Pfam PF00892 EamA-like transporter family 10 144 8.9E-24 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_2749 7ecbf400ebeb2336a197ccaf9fc96996 356 SUPERFAMILY SSF103481 62 148 2.35E-15 T 12-10-2018 Alide_3020 b99025bdcd3c4036539ac7383d0f2a48 297 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 8 217 1.2E-22 T 12-10-2018 Alide_3484 4087f12977d4918b4fc12c3d6d55df5e 70 Pfam PF11174 Protein of unknown function (DUF2970) 15 69 1.1E-16 T 12-10-2018 IPR021344 Protein of unknown function DUF2970 Alide_3794 f8c993580135d7388321b562bdb18dc2 164 Gene3D G3DSA:3.90.960.10 9 164 7.5E-41 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Alide_3794 f8c993580135d7388321b562bdb18dc2 164 Pfam PF04073 Aminoacyl-tRNA editing domain 35 152 5.4E-24 T 12-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Alide_3794 f8c993580135d7388321b562bdb18dc2 164 SUPERFAMILY SSF55826 15 162 1.15E-32 T 12-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Alide_0275 e511384847bd835cc404f88dea490a6e 408 Gene3D G3DSA:3.40.50.2300 59 364 1.6E-97 T 12-10-2018 Alide_0275 e511384847bd835cc404f88dea490a6e 408 SUPERFAMILY SSF53822 35 406 2.35E-76 T 12-10-2018 IPR028082 Periplasmic binding protein-like I Alide_0275 e511384847bd835cc404f88dea490a6e 408 Pfam PF13458 Periplasmic binding protein 35 371 4.6E-77 T 12-10-2018 IPR028081 Leucine-binding protein domain Alide_0275 e511384847bd835cc404f88dea490a6e 408 Gene3D G3DSA:3.40.50.2300 154 371 1.6E-97 T 12-10-2018 Alide_2489 f468b0b964bf2ffcc986c97f1e4dcc98 340 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 333 2.3E-19 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_2489 f468b0b964bf2ffcc986c97f1e4dcc98 340 SUPERFAMILY SSF161098 48 323 2.8E-33 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2489 f468b0b964bf2ffcc986c97f1e4dcc98 340 Gene3D G3DSA:1.10.3720.10 92 336 2.7E-32 T 12-10-2018 IPR035906 MetI-like superfamily Alide_2489 f468b0b964bf2ffcc986c97f1e4dcc98 340 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 36 331 8.3E-94 T 12-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 Alide_3289 75af58a166fa541e7cc0b22eb84c8d5a 257 Gene3D G3DSA:1.10.12.10 200 257 3.2E-16 T 12-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal Alide_3289 75af58a166fa541e7cc0b22eb84c8d5a 257 SUPERFAMILY SSF52096 2 256 6.15E-81 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_3289 75af58a166fa541e7cc0b22eb84c8d5a 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 257 1.5E-62 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_3289 75af58a166fa541e7cc0b22eb84c8d5a 257 Gene3D G3DSA:3.90.226.10 1 198 2.5E-64 T 12-10-2018 Alide_4263 b5123fd6167bd647a52a9f1a4d208f24 268 SMART SM00331 15 251 2.0E-34 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_4263 b5123fd6167bd647a52a9f1a4d208f24 268 Pfam PF13672 Protein phosphatase 2C 20 213 1.3E-18 T 12-10-2018 Alide_4263 b5123fd6167bd647a52a9f1a4d208f24 268 SMART SM00332 1 249 4.9E-26 T 12-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_4263 b5123fd6167bd647a52a9f1a4d208f24 268 Gene3D G3DSA:3.60.40.10 3 252 7.4E-69 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_4263 b5123fd6167bd647a52a9f1a4d208f24 268 SUPERFAMILY SSF81606 8 250 3.66E-64 T 12-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 Alide_0953 545afd829baf073a37a37e33680caa7b 243 Gene3D G3DSA:3.40.50.150 26 243 9.3E-68 T 12-10-2018 Alide_0953 545afd829baf073a37a37e33680caa7b 243 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 11 242 36.314 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Alide_0953 545afd829baf073a37a37e33680caa7b 243 Pfam PF01209 ubiE/COQ5 methyltransferase family 16 242 3.2E-84 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Alide_0953 545afd829baf073a37a37e33680caa7b 243 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 20 242 4.1E-77 T 12-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 Alide_0953 545afd829baf073a37a37e33680caa7b 243 SUPERFAMILY SSF53335 9 237 1.32E-42 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0953 545afd829baf073a37a37e33680caa7b 243 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 31 46 - T 12-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 Alide_0109 f088243d97febdae66f0c795ea070884 281 Pfam PF00149 Calcineurin-like phosphoesterase 21 237 1.1E-9 T 12-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Alide_0109 f088243d97febdae66f0c795ea070884 281 SUPERFAMILY SSF56300 1 261 9.27E-26 T 12-10-2018 Alide_1957 ebf34424b559cdec0f094ea6a5a8dd83 90 SUPERFAMILY SSF109910 7 83 2.22E-16 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily Alide_1957 ebf34424b559cdec0f094ea6a5a8dd83 90 Gene3D G3DSA:1.10.150.250 5 90 5.9E-16 T 12-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily Alide_1957 ebf34424b559cdec0f094ea6a5a8dd83 90 Pfam PF03937 Flavinator of succinate dehydrogenase 15 83 1.2E-18 T 12-10-2018 IPR005631 Flavinator of succinate dehydrogenase Alide_2421 cf25643ba88a3ca2ebc8c80d898fdc9b 411 Pfam PF01458 Uncharacterized protein family (UPF0051) 147 368 2.1E-32 T 12-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 Alide_2421 cf25643ba88a3ca2ebc8c80d898fdc9b 411 SUPERFAMILY SSF101960 10 374 3.4E-41 T 12-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily Alide_1589 132fc1521177ddc3438134a80aa11b25 406 TIGRFAM TIGR00937 2A51: chromate efflux transporter 22 400 3.1E-99 T 12-10-2018 IPR014047 Chromate transporter, long chain Alide_1589 132fc1521177ddc3438134a80aa11b25 406 PIRSF PIRSF004810 3 406 2.2E-123 T 12-10-2018 IPR014047 Chromate transporter, long chain Alide_1589 132fc1521177ddc3438134a80aa11b25 406 Pfam PF02417 Chromate transporter 16 181 6.4E-31 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Alide_1589 132fc1521177ddc3438134a80aa11b25 406 Pfam PF02417 Chromate transporter 236 401 9.6E-39 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Alide_1864 8f4790a6e3e529c5395b6a173138d0df 459 Gene3D G3DSA:3.40.50.1390 9 149 3.1E-42 T 12-10-2018 Alide_1864 8f4790a6e3e529c5395b6a173138d0df 459 Gene3D G3DSA:1.10.10.2600 150 285 1.2E-27 T 12-10-2018 IPR038109 DNA-binding recombinase domain superfamily Alide_1864 8f4790a6e3e529c5395b6a173138d0df 459 Pfam PF00239 Resolvase, N terminal domain 14 166 1.5E-40 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_1864 8f4790a6e3e529c5395b6a173138d0df 459 SMART SM00857 13 166 1.1E-59 T 12-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Alide_1864 8f4790a6e3e529c5395b6a173138d0df 459 Pfam PF07508 Recombinase 187 283 6.2E-14 T 12-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Alide_1864 8f4790a6e3e529c5395b6a173138d0df 459 SUPERFAMILY SSF53041 11 166 4.71E-38 T 12-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 Alide_0663 68b099019a8c486f8e08438dc8ac30a2 223 Pfam PF08241 Methyltransferase domain 55 108 6.6E-10 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Alide_0663 68b099019a8c486f8e08438dc8ac30a2 223 SUPERFAMILY SSF53335 45 189 1.32E-14 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_0663 68b099019a8c486f8e08438dc8ac30a2 223 Gene3D G3DSA:3.40.50.150 8 143 1.9E-12 T 12-10-2018 Alide_1514 6c88388f20a4aa946916bd03a2f459a3 404 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 14 401 51.061 T 12-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 Alide_1514 6c88388f20a4aa946916bd03a2f459a3 404 PIRSF PIRSF001434 3 404 2.0E-123 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_1514 6c88388f20a4aa946916bd03a2f459a3 404 Gene3D G3DSA:3.90.1150.10 264 403 5.1E-47 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_1514 6c88388f20a4aa946916bd03a2f459a3 404 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 13 400 1.6E-162 T 12-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 Alide_1514 6c88388f20a4aa946916bd03a2f459a3 404 Gene3D G3DSA:3.40.640.10 11 262 3.1E-81 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_1514 6c88388f20a4aa946916bd03a2f459a3 404 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 400 1.4E-129 T 12-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Alide_1514 6c88388f20a4aa946916bd03a2f459a3 404 SUPERFAMILY SSF53383 33 401 1.1E-109 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_1598 f7c9512bf56165f8ddfc7bb041555407 132 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 60 118 1.5E-15 T 12-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal Alide_1598 f7c9512bf56165f8ddfc7bb041555407 132 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 23 58 1.8E-13 T 12-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Alide_1598 f7c9512bf56165f8ddfc7bb041555407 132 SUPERFAMILY SSF50249 10 123 1.58E-31 T 12-10-2018 IPR012340 Nucleic acid-binding, OB-fold Alide_3554 286acacb0c1d2be2769922f781d03190 249 Pfam PF07471 Phage DNA packaging protein Nu1 102 204 9.6E-12 T 12-10-2018 IPR010906 Bacteriophage lambda, Nu1, terminase small subunit Alide_1991 9c670b40a28be3fc9b0f643767aeb2fe 269 Pfam PF02104 SURF1 family 30 246 1.3E-37 T 12-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Alide_0809 4ca4727b75bbc37d6ebd067b008ea1d4 327 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 1.2E-40 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_0809 4ca4727b75bbc37d6ebd067b008ea1d4 327 Gene3D G3DSA:1.10.3720.10 83 314 1.5E-22 T 12-10-2018 IPR035906 MetI-like superfamily Alide_0809 4ca4727b75bbc37d6ebd067b008ea1d4 327 SUPERFAMILY SSF161098 89 304 4.69E-16 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1283 24104ce6b5433744792a1b1c68eae7f6 276 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 3 276 6.0E-94 T 12-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 Alide_2547 9fae2512e1e6fcf69c9cc6221bae64bc 151 Pfam PF04972 BON domain 82 149 5.5E-20 T 12-10-2018 IPR007055 BON domain Alide_2547 9fae2512e1e6fcf69c9cc6221bae64bc 151 SMART SM00749 87 150 2.4E-7 T 12-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria Alide_1098 4e4bfc879d7a6755a5b723a5a4efb7be 174 Gene3D G3DSA:2.40.10.330 69 125 2.2E-35 T 12-10-2018 Alide_1098 4e4bfc879d7a6755a5b723a5a4efb7be 174 SUPERFAMILY SSF54534 4 144 5.11E-20 T 12-10-2018 Alide_1098 4e4bfc879d7a6755a5b723a5a4efb7be 174 Gene3D G3DSA:3.10.50.40 3 155 2.2E-35 T 12-10-2018 Alide_3373 b9a85af032f0864402c4b7b9440072b8 145 SUPERFAMILY SSF46458 24 145 3.08E-35 T 12-10-2018 IPR009050 Globin-like superfamily Alide_3373 b9a85af032f0864402c4b7b9440072b8 145 Pfam PF01152 Bacterial-like globin 26 144 8.7E-41 T 12-10-2018 IPR001486 Truncated hemoglobin GO:0019825 Alide_3373 b9a85af032f0864402c4b7b9440072b8 145 Gene3D G3DSA:1.10.490.10 22 145 9.3E-44 T 12-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 Alide_0544 c007f321fca78de49499015291a7831b 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 289 1.0E-26 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_2483 05a281a180af2c68a5b5bdc36467f059 452 TIGRFAM TIGR00797 matE: MATE efflux family protein 15 405 5.4E-62 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Alide_2483 05a281a180af2c68a5b5bdc36467f059 452 Pfam PF01554 MatE 239 395 4.5E-25 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Alide_2483 05a281a180af2c68a5b5bdc36467f059 452 Pfam PF01554 MatE 17 171 3.1E-16 T 12-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Alide_1986 0b5fb0ddaf1a1d4c91a33692675d14ca 456 SUPERFAMILY SSF53474 63 410 1.06E-8 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_2300 76e76bfbe9848f3e443279fdcff3ac73 378 SUPERFAMILY SSF51905 6 322 4.32E-26 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2300 76e76bfbe9848f3e443279fdcff3ac73 378 SUPERFAMILY SSF51905 118 248 2.63E-6 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2300 76e76bfbe9848f3e443279fdcff3ac73 378 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 305 3.9E-17 T 12-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Alide_2300 76e76bfbe9848f3e443279fdcff3ac73 378 Gene3D G3DSA:3.50.50.100 5 378 6.9E-77 T 12-10-2018 Alide_1404 3dd38a713a619734a8243c3e2890b4b7 172 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 100 111 - T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Alide_1404 3dd38a713a619734a8243c3e2890b4b7 172 SUPERFAMILY SSF55083 16 152 6.28E-49 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Alide_1404 3dd38a713a619734a8243c3e2890b4b7 172 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 18 145 5.1E-36 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Alide_1404 3dd38a713a619734a8243c3e2890b4b7 172 Gene3D G3DSA:3.30.70.560 14 167 4.0E-49 T 12-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Alide_1404 3dd38a713a619734a8243c3e2890b4b7 172 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 18 145 1.6E-37 T 12-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Alide_1445 c9b053a928efaf88ded6ccb91d3075d7 411 Pfam PF00589 Phage integrase family 208 368 2.0E-10 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_1445 c9b053a928efaf88ded6ccb91d3075d7 411 SUPERFAMILY SSF56349 99 390 2.19E-55 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_1445 c9b053a928efaf88ded6ccb91d3075d7 411 Gene3D G3DSA:1.10.443.10 209 394 3.0E-13 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_1445 c9b053a928efaf88ded6ccb91d3075d7 411 Gene3D G3DSA:3.30.160.390 1 89 1.4E-29 T 12-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Alide_1445 c9b053a928efaf88ded6ccb91d3075d7 411 Pfam PF13356 Arm DNA-binding domain 2 87 4.0E-18 T 12-10-2018 IPR025166 Integrase, DNA-binding domain Alide_1445 c9b053a928efaf88ded6ccb91d3075d7 411 Gene3D G3DSA:1.10.150.130 90 206 1.0E-31 T 12-10-2018 IPR010998 Integrase/recombinase, N-terminal Alide_2091 ebec7010e09a065b1f96ebe957ff45d9 1638 Pfam PF06791 Prophage tail length tape measure protein 59 259 6.3E-69 T 12-10-2018 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal Alide_3077 95a40c3dd241fd281bc9b5b7db58d92d 644 Gene3D G3DSA:2.130.10.10 63 533 1.8E-188 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Alide_3077 95a40c3dd241fd281bc9b5b7db58d92d 644 Gene3D G3DSA:2.60.40.420 534 644 3.8E-33 T 12-10-2018 IPR008972 Cupredoxin Alide_3077 95a40c3dd241fd281bc9b5b7db58d92d 644 SUPERFAMILY SSF50974 65 522 9.55E-119 T 12-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 Alide_3077 95a40c3dd241fd281bc9b5b7db58d92d 644 SUPERFAMILY SSF49503 514 643 4.98E-29 T 12-10-2018 IPR008972 Cupredoxin Alide_3077 95a40c3dd241fd281bc9b5b7db58d92d 644 Pfam PF13473 Cupredoxin-like domain 549 626 1.7E-6 T 12-10-2018 IPR028096 EfeO-type cupredoxin-like domain Alide_3077 95a40c3dd241fd281bc9b5b7db58d92d 644 TIGRFAM TIGR04244 nitrous_NosZ_RR: nitrous-oxide reductase, TAT-dependent 14 643 0.0 T 12-10-2018 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 Hamap MF_00900 GTPase HflX [hflX]. 30 383 44.813 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 Pfam PF01926 50S ribosome-binding GTPase 204 323 9.5E-21 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 Pfam PF13167 GTP-binding GTPase N-terminal 28 115 1.0E-27 T 12-10-2018 IPR025121 GTPase HflX, N-terminal Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 SUPERFAMILY SSF52540 202 373 4.8E-40 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 204 224 6.2E-8 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 272 290 6.2E-8 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 225 243 6.2E-8 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 Gene3D G3DSA:3.40.50.11060 23 141 3.2E-35 T 12-10-2018 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 Gene3D G3DSA:3.40.50.300 203 379 1.2E-40 T 12-10-2018 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 14 370 3.2E-140 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 PIRSF PIRSF006809 7 383 9.6E-131 T 12-10-2018 IPR016496 GTPase HflX GO:0005525 Alide_3031 7788ace93c1acd690f26aec3f09d5067 392 Pfam PF16360 GTP-binding GTPase Middle Region 117 196 1.8E-27 T 12-10-2018 IPR032305 GTP-binding protein, middle domain Alide_4392 a3f2ad71de03497853540a4757461e59 192 Pfam PF01169 Uncharacterized protein family UPF0016 7 80 5.9E-20 T 12-10-2018 IPR001727 Gdt1 family Alide_4392 a3f2ad71de03497853540a4757461e59 192 Pfam PF01169 Uncharacterized protein family UPF0016 105 179 2.3E-23 T 12-10-2018 IPR001727 Gdt1 family Alide_2042 6711310876348d7bf43de87a13bff37c 134 SUPERFAMILY SSF46689 18 106 1.13E-10 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_2042 6711310876348d7bf43de87a13bff37c 134 Pfam PF08765 Mor transcription activator family 11 108 4.5E-19 T 12-10-2018 IPR014875 Mor transcription activator Alide_0065 2c6ca3bb8b89ca71a5f36dbd54c5d1f5 498 Pfam PF06074 Protein of unknown function (DUF935) 28 488 1.3E-99 T 12-10-2018 IPR009279 Protein of unknown function DUF935 Alide_0537 fadba532bce9ca760ca868efca8b8add 106 Pfam PF08895 Domain of unknown function (DUF1840) 1 106 7.6E-34 T 12-10-2018 IPR014991 Protein of unknown function DUF1840 Alide_1416 6c5c76bfe2c8c256edf30b74fb81cc5f 210 Pfam PF13511 Domain of unknown function (DUF4124) 18 71 2.6E-8 T 12-10-2018 IPR025392 Domain of unknown function DUF4124 Alide_4379 5f1393a398b00670d5eb08273b99e478 814 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 26 779 18.157 T 12-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 Alide_4379 5f1393a398b00670d5eb08273b99e478 814 Pfam PF04453 Organic solvent tolerance protein 321 706 4.3E-87 T 12-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 Alide_4328 01d426d14afaa675ea35858ff823ca89 103 Pfam PF13670 Peptidase propeptide and YPEB domain 17 94 2.8E-13 T 12-10-2018 IPR025711 PepSY domain Alide_0962 419bb72454118be184817dfddf915586 253 Gene3D G3DSA:3.60.10.10 13 253 5.2E-42 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Alide_0962 419bb72454118be184817dfddf915586 253 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 18 233 4.4E-12 T 12-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Alide_0962 419bb72454118be184817dfddf915586 253 SUPERFAMILY SSF56219 14 251 1.44E-47 T 12-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Alide_3558 16a588d01895629370c611095bf0a536 336 SUPERFAMILY SSF46785 59 102 8.97E-6 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_0401 9aea0809aad51a9c10a69383176f0a20 142 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 142 2.0E-41 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 Alide_0401 9aea0809aad51a9c10a69383176f0a20 142 PIRSF PIRSF004638 1 142 3.0E-46 T 12-10-2018 IPR005265 Uncharacterised protein family UPF0093 Alide_0729 d06ff1c9e8e1e9405fd09dbdb76279dc 262 Pfam PF00174 Oxidoreductase molybdopterin binding domain 106 251 1.9E-33 T 12-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Alide_0729 d06ff1c9e8e1e9405fd09dbdb76279dc 262 Gene3D G3DSA:3.90.420.10 95 261 5.1E-48 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Alide_0729 d06ff1c9e8e1e9405fd09dbdb76279dc 262 SUPERFAMILY SSF56524 59 261 1.7E-65 T 12-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 Alide_4542 4311e4371933097dc47e54f2c326b3b6 295 Gene3D G3DSA:1.25.40.10 3 203 4.8E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_4542 4311e4371933097dc47e54f2c326b3b6 295 SUPERFAMILY SSF81901 36 169 8.55E-6 T 12-10-2018 Alide_3628 92d4db964ea86ce917f43773ed4200af 208 Gene3D G3DSA:3.40.1740.10 6 208 3.7E-66 T 12-10-2018 Alide_3628 92d4db964ea86ce917f43773ed4200af 208 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 8 208 37.884 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 Alide_3628 92d4db964ea86ce917f43773ed4200af 208 SUPERFAMILY SSF143456 8 208 7.98E-61 T 12-10-2018 Alide_3628 92d4db964ea86ce917f43773ed4200af 208 Pfam PF02622 Uncharacterized ACR, COG1678 19 195 1.0E-49 T 12-10-2018 IPR003774 Protein of unknown function UPF0301 Alide_0775 0ce9393870999c58fb1cd427f48de260 502 Pfam PF13193 AMP-binding enzyme C-terminal domain 418 492 9.3E-18 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_0775 0ce9393870999c58fb1cd427f48de260 502 SUPERFAMILY SSF56801 3 501 3.27E-133 T 12-10-2018 Alide_0775 0ce9393870999c58fb1cd427f48de260 502 Pfam PF00501 AMP-binding enzyme 8 409 6.8E-91 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0775 0ce9393870999c58fb1cd427f48de260 502 Gene3D G3DSA:3.40.50.12780 1 404 1.5E-100 T 12-10-2018 Alide_0775 0ce9393870999c58fb1cd427f48de260 502 Gene3D G3DSA:3.30.300.310 405 501 8.1E-32 T 12-10-2018 Alide_0775 0ce9393870999c58fb1cd427f48de260 502 ProSitePatterns PS00455 Putative AMP-binding domain signature. 154 165 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_2856 66e11dac3fa5b5333c77583a419b0d03 288 SUPERFAMILY SSF102405 28 275 1.22E-55 T 12-10-2018 Alide_2856 66e11dac3fa5b5333c77583a419b0d03 288 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 107 275 5.5E-31 T 12-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG Alide_2856 66e11dac3fa5b5333c77583a419b0d03 288 Pfam PF03641 Possible lysine decarboxylase 144 272 2.2E-32 T 12-10-2018 IPR031100 LOG family Alide_1065 6f6563543570b24731a0d37da0c02b68 84 Pfam PF05433 Glycine zipper 2TM domain 36 74 7.5E-8 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 Alide_1551 15fdced6465b0c86a36bc42784fba890 103 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 78 1.6E-14 T 12-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 Alide_3644 4484cb2bf39cb96cd8bd8f355f4c9e87 503 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 441 2.3E-150 T 12-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane Alide_2837 e89276231939abddaf9ce9e7b351b276 668 SUPERFAMILY SSF52540 105 554 5.2E-49 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2837 e89276231939abddaf9ce9e7b351b276 668 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 111 557 4.7E-104 T 12-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 Alide_2837 e89276231939abddaf9ce9e7b351b276 668 Gene3D G3DSA:3.40.50.300 325 555 3.9E-50 T 12-10-2018 Alide_0793 f35e3cca219f289464f92c180439d02a 271 Pfam PF01203 Type II secretion system (T2SS), protein N 54 266 1.3E-29 T 12-10-2018 IPR022792 Type II secretion system, protein N Alide_0543 36cc2770689f2f916db131e4b0969021 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 329 5.2E-29 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_4544 f767fd95e29f2606411084ebc56d20c8 502 Pfam PF06122 Conjugative relaxosome accessory transposon protein 34 430 3.4E-54 T 12-10-2018 IPR010927 Type IV conjugative transfer system protein TraH Alide_4619 9d1e98f3be387c153edb26ec795f9db8 323 Pfam PF00589 Phage integrase family 135 303 2.9E-31 T 12-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Alide_4619 9d1e98f3be387c153edb26ec795f9db8 323 SUPERFAMILY SSF56349 25 307 3.83E-41 T 12-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Alide_4619 9d1e98f3be387c153edb26ec795f9db8 323 Gene3D G3DSA:1.10.443.10 128 320 1.5E-42 T 12-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Alide_2394 84816d6b9de356cbfaa4458928aa4998 407 Gene3D G3DSA:1.20.1250.20 9 388 4.1E-82 T 12-10-2018 Alide_2394 84816d6b9de356cbfaa4458928aa4998 407 Pfam PF07690 Major Facilitator Superfamily 20 329 3.9E-34 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_2394 84816d6b9de356cbfaa4458928aa4998 407 SUPERFAMILY SSF103473 4 394 9.94E-54 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_1120 4137251b85c083591b6942257cf50ad6 204 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 161 1.6E-23 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Alide_0032 e7981af745428d842037d6fc1beccd57 417 Pfam PF07670 Nucleoside recognition 50 156 2.6E-6 T 12-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Alide_0032 e7981af745428d842037d6fc1beccd57 417 PIRSF PIRSF036542 2 417 5.4E-170 T 12-10-2018 IPR011415 Predicted bifunctional spore maturation protein, fused SpmA/SpmB Alide_4530 05c96f5c3a7ea6e9257810a099bc38d3 92 Pfam PF07178 TraL protein 6 81 1.9E-16 T 12-10-2018 IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 Alide_4530 05c96f5c3a7ea6e9257810a099bc38d3 92 TIGRFAM TIGR02762 TraL_TIGR: type IV conjugative transfer system protein TraL 5 88 2.4E-15 T 12-10-2018 IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 Alide_3781 8d2a8ddbdf4d0c3b33d021206ab11ed3 129 Pfam PF04343 Protein of unknown function, DUF488 11 118 1.3E-29 T 12-10-2018 IPR007438 Protein of unknown function DUF488 Alide_0239 bed6a5d5a96f98272636accf2ecdec22 277 Pfam PF10134 Replication initiator protein A 24 253 5.8E-92 T 12-10-2018 IPR018777 Replication initiator protein A Alide_2684 6bf923c4c11099610c58549fdfe10cbf 74 Pfam PF04325 Protein of unknown function (DUF465) 19 65 3.2E-17 T 12-10-2018 IPR007420 Protein of unknown function DUF465 Alide_2684 6bf923c4c11099610c58549fdfe10cbf 74 Gene3D G3DSA:1.20.58.660 1 74 5.3E-26 T 12-10-2018 Alide_1279 f61fbdf3d1333d052c9448eb58080a3d 67 Pfam PF05489 Phage Tail Protein X 5 58 1.6E-16 T 12-10-2018 IPR008861 Phage Tail Protein X-like Alide_1279 f61fbdf3d1333d052c9448eb58080a3d 67 Gene3D G3DSA:3.10.350.10 1 67 1.7E-22 T 12-10-2018 IPR036779 LysM domain superfamily Alide_0403 f4993d83d90fe4814b4c97b7754c592f 113 Gene3D G3DSA:3.40.30.10 9 111 2.8E-30 T 12-10-2018 Alide_0403 f4993d83d90fe4814b4c97b7754c592f 113 SUPERFAMILY SSF52833 9 108 1.57E-25 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_3039 54683fb73debcb12061735548c40d39f 275 Gene3D G3DSA:1.25.40.10 52 271 1.3E-44 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_3039 54683fb73debcb12061735548c40d39f 275 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 22 260 5.9E-58 T 12-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW Alide_3039 54683fb73debcb12061735548c40d39f 275 Pfam PF14559 Tetratricopeptide repeat 68 127 1.2E-6 T 12-10-2018 Alide_3039 54683fb73debcb12061735548c40d39f 275 Pfam PF13432 Tetratricopeptide repeat 137 195 5.0E-4 T 12-10-2018 Alide_3039 54683fb73debcb12061735548c40d39f 275 SUPERFAMILY SSF48452 58 197 7.11E-23 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_3039 54683fb73debcb12061735548c40d39f 275 SMART SM00028 161 194 7.8 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_3039 54683fb73debcb12061735548c40d39f 275 SMART SM00028 91 124 4.5E-4 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_3039 54683fb73debcb12061735548c40d39f 275 SMART SM00028 57 90 31.0 T 12-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 Alide_1836 664332affdf7006f75599aa5f711a8aa 394 SUPERFAMILY SSF52540 67 375 1.12E-17 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1836 664332affdf7006f75599aa5f711a8aa 394 Gene3D G3DSA:3.40.50.300 63 171 1.1E-8 T 12-10-2018 Alide_0261 b6047ff1e618ac0447921431bb95adbf 632 Pfam PF02653 Branched-chain amino acid transport system / permease component 348 605 8.8E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_0261 b6047ff1e618ac0447921431bb95adbf 632 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 290 2.1E-33 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_1266 7f60d096090562fc3ed76b5e0172397b 212 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 150 194 0.0011 T 12-10-2018 IPR006530 YD repeat Alide_1266 7f60d096090562fc3ed76b5e0172397b 212 Pfam PF05593 RHS Repeat 174 205 5.0E-5 T 12-10-2018 IPR031325 RHS repeat Alide_1266 7f60d096090562fc3ed76b5e0172397b 212 Pfam PF05593 RHS Repeat 150 185 9.5E-5 T 12-10-2018 IPR031325 RHS repeat Alide_1702 83c07ae076b0a01473b21d9afab4d949 413 SUPERFAMILY SSF82171 181 340 1.71E-7 T 12-10-2018 Alide_0258 67cddf006301bcd0f54800d419a565b8 238 Pfam PF05433 Glycine zipper 2TM domain 132 171 1.4E-10 T 12-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 Alide_1017 35ca7eaadf34eefbe51ad3328b8daa8b 1145 Gene3D G3DSA:2.130.10.10 235 345 1.0E-5 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Alide_1017 35ca7eaadf34eefbe51ad3328b8daa8b 1145 SUPERFAMILY SSF110296 65 306 1.66E-30 T 12-10-2018 Alide_1017 35ca7eaadf34eefbe51ad3328b8daa8b 1145 Pfam PF14870 Photosynthesis system II assembly factor YCF48 191 264 3.1E-7 T 12-10-2018 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain Alide_1017 35ca7eaadf34eefbe51ad3328b8daa8b 1145 Gene3D G3DSA:2.130.10.10 57 234 5.7E-14 T 12-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Alide_2961 b1a92f44ab3666fffe1419956bd77a1d 385 SUPERFAMILY SSF89796 9 382 3.92E-111 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2961 b1a92f44ab3666fffe1419956bd77a1d 385 Pfam PF02515 CoA-transferase family III 11 375 6.7E-106 T 12-10-2018 IPR003673 CoA-transferase family III GO:0003824 Alide_2961 b1a92f44ab3666fffe1419956bd77a1d 385 Gene3D G3DSA:3.40.50.10540 10 357 3.4E-110 T 12-10-2018 IPR023606 CoA-transferase family III domain superfamily Alide_2961 b1a92f44ab3666fffe1419956bd77a1d 385 Gene3D G3DSA:3.30.1540.10 232 323 3.4E-110 T 12-10-2018 Alide_2674 b455705e8210408fe864f39f5941f42b 450 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 9 352 5.3E-129 T 12-10-2018 IPR010839 Acyclic terpene utilisation Alide_1543 ec2315e2a063c2cd74aded37f3a40925 123 Pfam PF03334 Na+/H+ antiporter subunit 17 97 9.2E-18 T 12-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 Alide_3251 5a06b11a819ec5d0cb08ebd345a4bcbf 1245 Pfam PF05567 Neisseria PilC beta-propeller domain 624 1016 2.1E-49 T 12-10-2018 IPR008707 PilC beta-propeller domain Alide_4409 2f232fa9d6440becf04215c8c3e18337 345 Gene3D G3DSA:3.60.70.12 2 345 5.6E-120 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Alide_4409 2f232fa9d6440becf04215c8c3e18337 345 Pfam PF03576 Peptidase family S58 17 332 1.2E-108 T 12-10-2018 IPR005321 Peptidase S58, DmpA Alide_4409 2f232fa9d6440becf04215c8c3e18337 345 SUPERFAMILY SSF56266 13 333 4.97E-98 T 12-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Alide_3404 4bf9389f24cf359197df443e7443355d 413 Pfam PF01734 Patatin-like phospholipase 15 240 3.2E-19 T 12-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Alide_3404 4bf9389f24cf359197df443e7443355d 413 SUPERFAMILY SSF52151 13 265 2.56E-41 T 12-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Alide_3404 4bf9389f24cf359197df443e7443355d 413 Gene3D G3DSA:3.40.1090.10 4 117 7.3E-19 T 12-10-2018 Alide_4645 75b246759f3de148627cb1d7dce76f73 387 Gene3D G3DSA:1.10.10.10 124 219 3.5E-9 T 12-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Alide_4645 75b246759f3de148627cb1d7dce76f73 387 Pfam PF01051 Initiator Replication protein 2 211 3.7E-20 T 12-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 Alide_4645 75b246759f3de148627cb1d7dce76f73 387 SUPERFAMILY SSF46785 112 217 2.31E-19 T 12-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Alide_1889 2fbe5de6df76bdfa66ab0c06d0ed17cd 141 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 10 121 2.9E-20 T 12-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 Alide_1889 2fbe5de6df76bdfa66ab0c06d0ed17cd 141 SUPERFAMILY SSF54637 6 126 1.74E-32 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_1889 2fbe5de6df76bdfa66ab0c06d0ed17cd 141 Gene3D G3DSA:3.10.129.10 3 131 5.8E-45 T 12-10-2018 Alide_1889 2fbe5de6df76bdfa66ab0c06d0ed17cd 141 Pfam PF03061 Thioesterase superfamily 40 114 4.2E-14 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_2647 9a20f270fc78669e9d52e6303db47841 92 PIRSF PIRSF001486 1 92 5.3E-48 T 12-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Alide_2647 9a20f270fc78669e9d52e6303db47841 92 SUPERFAMILY SSF54909 1 91 4.02E-38 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_2647 9a20f270fc78669e9d52e6303db47841 92 Gene3D G3DSA:3.30.70.1060 1 92 1.2E-36 T 12-10-2018 Alide_2647 9a20f270fc78669e9d52e6303db47841 92 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 4.4E-45 T 12-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Alide_2647 9a20f270fc78669e9d52e6303db47841 92 Pfam PF02426 Muconolactone delta-isomerase 1 90 4.1E-41 T 12-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Alide_2647 9a20f270fc78669e9d52e6303db47841 92 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 4.0E-13 T 12-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 Alide_0828 2238e26cf27611c219c22c2810a88810 270 Pfam PF04909 Amidohydrolase 6 270 8.7E-29 T 12-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Alide_0828 2238e26cf27611c219c22c2810a88810 270 Gene3D G3DSA:3.20.20.140 1 270 2.3E-61 T 12-10-2018 Alide_0828 2238e26cf27611c219c22c2810a88810 270 SUPERFAMILY SSF51556 3 270 1.66E-55 T 12-10-2018 IPR032466 Metal-dependent hydrolase Alide_2412 5e4b52345a2213386aa900577c83c7ad 135 Gene3D G3DSA:3.10.129.10 19 133 9.1E-6 T 12-10-2018 Alide_2412 5e4b52345a2213386aa900577c83c7ad 135 SUPERFAMILY SSF54637 5 133 6.71E-7 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_1703 653e2aca5b40d5360d197892c5433d62 101 Pfam PF16082 Bacteriophage holin family, superfamily II-like 1 76 1.1E-32 T 12-10-2018 IPR032124 Bacteriophage F116-like holin Alide_4032 eb314312f165bb99a56186a26788017f 464 TIGRFAM TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family 48 456 3.1E-177 T 12-10-2018 IPR021204 Integrating conjugative element protein, PFL4711 Alide_0571 89f40058b175bb468b9ef417ac6337ac 248 Pfam PF01925 Sulfite exporter TauE/SafE 8 241 9.8E-32 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Alide_4627 bb07af8ad81e3843e883e123cba79288 107 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 3 103 1.0E-21 T 12-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 Alide_4627 bb07af8ad81e3843e883e123cba79288 107 SUPERFAMILY SSF50118 2 106 1.52E-24 T 12-10-2018 Alide_4627 bb07af8ad81e3843e883e123cba79288 107 Gene3D G3DSA:2.30.30.110 12 107 2.6E-20 T 12-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor Alide_3964 ea3687e5c9fff0b47b3ecea967711f11 143 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 142 3.9E-46 T 12-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Alide_3964 ea3687e5c9fff0b47b3ecea967711f11 143 SUPERFAMILY SSF52080 4 141 7.06E-44 T 12-10-2018 IPR036227 Ribosomal L18e/L15P superfamily Alide_3964 ea3687e5c9fff0b47b3ecea967711f11 143 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 143 18.899 T 12-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 Alide_3964 ea3687e5c9fff0b47b3ecea967711f11 143 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 142 4.8E-30 T 12-10-2018 IPR021131 Ribosomal protein L18e/L15P Alide_3964 ea3687e5c9fff0b47b3ecea967711f11 143 Gene3D G3DSA:3.100.10.10 71 143 1.2E-11 T 12-10-2018 Alide_3894 06b256603e0aef1d2eb25e8a87eedb9d 393 Pfam PF00155 Aminotransferase class I and II 43 384 7.2E-35 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_3894 06b256603e0aef1d2eb25e8a87eedb9d 393 Gene3D G3DSA:3.40.640.10 65 282 3.5E-138 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_3894 06b256603e0aef1d2eb25e8a87eedb9d 393 SUPERFAMILY SSF53383 4 390 3.58E-104 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_3894 06b256603e0aef1d2eb25e8a87eedb9d 393 Gene3D G3DSA:3.90.1150.10 16 386 3.5E-138 T 12-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Alide_2073 42a9b40d51afad1b57575fcd00341af9 100 Pfam PF10805 Protein of unknown function (DUF2730) 39 90 4.3E-8 T 12-10-2018 IPR020269 Bacteriophage Mu, Gp25 Alide_0432 06ca8145b001a33208129acf0c316773 130 Pfam PF03899 ATP synthase I chain 14 109 3.5E-16 T 12-10-2018 IPR005598 ATP synthase protein I Alide_2237 3776d79fe6f4e0e13c1d46565fd7962d 313 Gene3D G3DSA:3.40.50.150 77 287 3.9E-48 T 12-10-2018 Alide_2237 3776d79fe6f4e0e13c1d46565fd7962d 313 SUPERFAMILY SSF53335 29 276 1.38E-49 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_2237 3776d79fe6f4e0e13c1d46565fd7962d 313 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 18 312 1.1E-83 T 12-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Alide_2708 89a12d880ce72f06a727ed67c79d35fd 481 Pfam PF03773 Predicted permease 12 442 2.6E-64 T 12-10-2018 IPR005524 Predicted permease DUF318 Alide_1945 e00af76bad4db917049256d93a02d592 363 Pfam PF16113 Enoyl-CoA hydratase/isomerase 16 348 1.4E-120 T 12-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 Alide_1945 e00af76bad4db917049256d93a02d592 363 Gene3D G3DSA:3.90.226.10 4 363 4.8E-120 T 12-10-2018 Alide_1945 e00af76bad4db917049256d93a02d592 363 SUPERFAMILY SSF52096 4 333 4.12E-61 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_4251 b9e56431ee200e463cc9c5ab68c4a93b 245 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 15 192 2.2E-69 T 12-10-2018 IPR022301 Integral membrane protein YjbE Alide_4251 b9e56431ee200e463cc9c5ab68c4a93b 245 Pfam PF03741 Integral membrane protein TerC family 17 191 7.2E-46 T 12-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 Alide_2667 688014a4285e91afc91c8c12452b7e95 365 Gene3D G3DSA:3.40.50.300 15 189 3.1E-21 T 12-10-2018 Alide_2667 688014a4285e91afc91c8c12452b7e95 365 SUPERFAMILY SSF52540 43 182 2.88E-16 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2667 688014a4285e91afc91c8c12452b7e95 365 Pfam PF03969 AFG1-like ATPase 3 354 1.3E-123 T 12-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 Alide_3004 7fe29fff97d0a68f9e6cc01300c96e49 695 Pfam PF05650 Domain of unknown function (DUF802) 321 371 3.5E-12 T 12-10-2018 IPR008520 Domain of unknown function DUF802 Alide_2232 78c6fe9e4eaec4a3c230aa020f9585a6 476 Pfam PF02661 Fic/DOC family 238 334 6.0E-11 T 12-10-2018 IPR003812 Fido domain Alide_2232 78c6fe9e4eaec4a3c230aa020f9585a6 476 SUPERFAMILY SSF140931 213 387 1.1E-19 T 12-10-2018 IPR036597 Fido-like domain superfamily Alide_2232 78c6fe9e4eaec4a3c230aa020f9585a6 476 Gene3D G3DSA:1.10.3290.10 153 387 1.2E-36 T 12-10-2018 IPR036597 Fido-like domain superfamily Alide_0533 3028482f7ea9d5b9be15892c0c435a33 367 PIRSF PIRSF029285 1 367 1.2E-113 T 12-10-2018 IPR014553 Predicted aminopeptidase Alide_0533 3028482f7ea9d5b9be15892c0c435a33 367 Pfam PF10023 Putative aminopeptidase 28 362 1.3E-127 T 12-10-2018 IPR014553 Predicted aminopeptidase Alide_1478 bee31b0b57ca428c84d0908ddadf002a 206 Pfam PF01351 Ribonuclease HII 22 198 1.3E-40 T 12-10-2018 IPR024567 Ribonuclease HII/HIII domain Alide_1478 bee31b0b57ca428c84d0908ddadf002a 206 Gene3D G3DSA:3.30.420.10 10 205 4.8E-79 T 12-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Alide_1478 bee31b0b57ca428c84d0908ddadf002a 206 Hamap MF_00052_B Ribonuclease HII [rnhB]. 20 199 37.838 T 12-10-2018 IPR022898 Ribonuclease HII GO:0004523 Alide_1478 bee31b0b57ca428c84d0908ddadf002a 206 SUPERFAMILY SSF53098 15 203 6.53E-69 T 12-10-2018 IPR012337 Ribonuclease H-like superfamily Alide_0348 2d1f5c0d9fb765a24a51910be051c9e0 228 Gene3D G3DSA:3.50.30.100 3 197 1.1E-53 T 12-10-2018 Alide_0348 2d1f5c0d9fb765a24a51910be051c9e0 228 Pfam PF03737 Aldolase/RraA 31 175 2.3E-42 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_0348 2d1f5c0d9fb765a24a51910be051c9e0 228 SUPERFAMILY SSF89562 25 181 2.88E-46 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_2000 22fcaa3b36c518481975873c692034f7 140 Gene3D G3DSA:3.10.129.10 1 140 8.6E-41 T 12-10-2018 Alide_2000 22fcaa3b36c518481975873c692034f7 140 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 5 99 4.7E-28 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Alide_2000 22fcaa3b36c518481975873c692034f7 140 Pfam PF03061 Thioesterase superfamily 16 96 9.0E-19 T 12-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Alide_2000 22fcaa3b36c518481975873c692034f7 140 SUPERFAMILY SSF54637 1 138 2.07E-36 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2000 22fcaa3b36c518481975873c692034f7 140 PIRSF PIRSF003230 1 140 2.2E-38 T 12-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Alide_1808 94819679cf3512e3b4b9ee06a919045c 285 Pfam PF02653 Branched-chain amino acid transport system / permease component 4 269 8.4E-38 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3374 fe2f97033a88ad61e81e7c266840f838 130 SUPERFAMILY SSF109635 5 92 1.44E-7 T 12-10-2018 IPR037187 DksA, N-terminal domain superfamily Alide_3374 fe2f97033a88ad61e81e7c266840f838 130 Gene3D G3DSA:1.20.120.910 1 130 2.6E-25 T 12-10-2018 Alide_3374 fe2f97033a88ad61e81e7c266840f838 130 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 91 125 1.0E-11 T 12-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Alide_3374 fe2f97033a88ad61e81e7c266840f838 130 SUPERFAMILY SSF57716 93 128 2.99E-7 T 12-10-2018 Alide_0837 b613c05805095b0c8c18ffcba69d5252 70 Pfam PF13627 Prokaryotic lipoprotein-attachment site 12 32 1.2E-6 T 12-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site Alide_1649 305cdcc6efdb9d2ae5369bff343bd7ef 272 Pfam PF04404 ERF superfamily 77 217 4.9E-24 T 12-10-2018 IPR007499 Essential recombination function protein Alide_0763 dd6a2075d9602900d785cbe6aa3eb704 252 Pfam PF13448 Domain of unknown function (DUF4114) 131 220 4.3E-11 T 12-10-2018 IPR025193 Domain of unknown function DUF4114 Alide_0763 dd6a2075d9602900d785cbe6aa3eb704 252 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 224 248 5.6E-7 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_0763 dd6a2075d9602900d785cbe6aa3eb704 252 Pfam PF07589 PEP-CTERM motif 224 246 3.0E-7 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_2001 46276da5ba7fbb3b55aedaa363143486 394 SUPERFAMILY SSF53383 1 392 1.25E-103 T 12-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Alide_2001 46276da5ba7fbb3b55aedaa363143486 394 Pfam PF00155 Aminotransferase class I and II 35 388 5.2E-55 T 12-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Alide_2001 46276da5ba7fbb3b55aedaa363143486 394 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 12-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Alide_2001 46276da5ba7fbb3b55aedaa363143486 394 Gene3D G3DSA:3.40.640.10 2 394 6.9E-118 T 12-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Alide_0566 985d8d5857d1c70d386dc449ed0d0092 570 Pfam PF07519 Tannase and feruloyl esterase 88 568 9.7E-113 T 12-10-2018 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 Alide_0566 985d8d5857d1c70d386dc449ed0d0092 570 SUPERFAMILY SSF53474 103 504 3.3E-18 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_1348 e86dec51fa270e12b613b53907721068 294 Pfam PF02653 Branched-chain amino acid transport system / permease component 16 282 6.4E-43 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3342 94eb9f348682d3c6ba0ada0c675b94bf 80 TIGRFAM TIGR04438 small_Trp_rich: small Trp-rich protein 1 76 2.3E-42 T 12-10-2018 IPR031044 Small Trp-rich protein Alide_1212 77bc3d89c9a207cc9fef8bc9fab4bc92 112 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 17 108 4.2E-28 T 12-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Alide_1212 77bc3d89c9a207cc9fef8bc9fab4bc92 112 Gene3D G3DSA:3.30.1360.20 16 111 3.5E-30 T 12-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Alide_1212 77bc3d89c9a207cc9fef8bc9fab4bc92 112 SUPERFAMILY SSF55248 17 110 4.32E-31 T 12-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Alide_1212 77bc3d89c9a207cc9fef8bc9fab4bc92 112 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 15 110 22.507 T 12-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 Alide_4102 9613d66ccb34241d5dab20434f742b1b 488 Pfam PF02386 Cation transport protein 51 478 4.3E-58 T 12-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Alide_4102 9613d66ccb34241d5dab20434f742b1b 488 PIRSF PIRSF006247 1 488 3.0E-160 T 12-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 Alide_4250 007cf5e56705810ea77ef222d119c138 134 Pfam PF06945 Protein of unknown function (DUF1289) 74 119 5.2E-17 T 12-10-2018 IPR010710 Protein of unknown function DUF1289 Alide_4250 007cf5e56705810ea77ef222d119c138 134 Pfam PF12512 Protein of unknown function (DUF3717) 4 68 1.9E-27 T 12-10-2018 IPR022191 Protein of unknown function DUF3717 Alide_2215 70cb5841db1f26e9993324cc2c58ff53 370 Gene3D G3DSA:3.50.50.60 6 358 4.3E-142 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2215 70cb5841db1f26e9993324cc2c58ff53 370 Pfam PF01266 FAD dependent oxidoreductase 6 364 2.1E-68 T 12-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Alide_2215 70cb5841db1f26e9993324cc2c58ff53 370 SUPERFAMILY SSF51905 5 367 3.45E-47 T 12-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Alide_2215 70cb5841db1f26e9993324cc2c58ff53 370 Gene3D G3DSA:3.30.9.10 87 320 4.3E-142 T 12-10-2018 Alide_2885 69afa69b2885933ed9af619c3ef5f5e1 509 SUPERFAMILY SSF56801 9 507 8.37E-124 T 12-10-2018 Alide_2885 69afa69b2885933ed9af619c3ef5f5e1 509 Gene3D G3DSA:3.40.50.12780 6 405 3.8E-89 T 12-10-2018 Alide_2885 69afa69b2885933ed9af619c3ef5f5e1 509 Pfam PF13193 AMP-binding enzyme C-terminal domain 421 497 9.0E-17 T 12-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Alide_2885 69afa69b2885933ed9af619c3ef5f5e1 509 Gene3D G3DSA:3.30.300.310 409 509 1.8E-30 T 12-10-2018 Alide_2885 69afa69b2885933ed9af619c3ef5f5e1 509 ProSitePatterns PS00455 Putative AMP-binding domain signature. 165 176 - T 12-10-2018 IPR020845 AMP-binding, conserved site Alide_2885 69afa69b2885933ed9af619c3ef5f5e1 509 Pfam PF00501 AMP-binding enzyme 18 412 8.5E-74 T 12-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Alide_0848 6a36ef2d07f7ca886a706503c78e88c7 206 Pfam PF07209 Protein of unknown function (DUF1415) 20 188 8.5E-69 T 12-10-2018 IPR009858 Protein of unknown function DUF1415 Alide_2643 004c0707334c97b42a8ed09d16f0e35e 507 Gene3D G3DSA:3.40.50.300 86 277 3.0E-21 T 12-10-2018 Alide_2643 004c0707334c97b42a8ed09d16f0e35e 507 SUPERFAMILY SSF52540 97 255 6.92E-18 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_2643 004c0707334c97b42a8ed09d16f0e35e 507 Pfam PF01926 50S ribosome-binding GTPase 106 232 3.1E-8 T 12-10-2018 IPR006073 GTP binding domain GO:0005525 Alide_0244 f70829181c7a02ca60c6e7c0d91ac9d5 104 Pfam PF05284 Protein of unknown function (DUF736) 3 98 7.4E-35 T 12-10-2018 IPR007948 Protein of unknown function DUF736 Alide_0834 84e66359fd61bde4cfad7bc3000c21c0 213 Pfam PF01794 Ferric reductase like transmembrane component 64 171 3.6E-16 T 12-10-2018 IPR013130 Ferric reductase transmembrane component-like domain Alide_0834 84e66359fd61bde4cfad7bc3000c21c0 213 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 16 211 21.16 T 12-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 Alide_0966 67b1074443864205738cd5ecf4da5d66 293 SUPERFAMILY SSF103481 197 292 3.4E-10 T 12-10-2018 Alide_0966 67b1074443864205738cd5ecf4da5d66 293 SUPERFAMILY SSF103481 34 139 4.97E-14 T 12-10-2018 Alide_0966 67b1074443864205738cd5ecf4da5d66 293 Pfam PF00892 EamA-like transporter family 156 290 4.0E-9 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_0966 67b1074443864205738cd5ecf4da5d66 293 Pfam PF00892 EamA-like transporter family 7 135 9.9E-10 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_4110 2e283016436ed931d5569423404cbc97 170 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 7 169 23.475 T 12-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 Alide_4110 2e283016436ed931d5569423404cbc97 170 Pfam PF04390 Lipopolysaccharide-assembly 34 164 4.8E-11 T 12-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 Alide_4110 2e283016436ed931d5569423404cbc97 170 Gene3D G3DSA:3.30.160.150 35 170 1.3E-44 T 12-10-2018 Alide_3346 66dc25519d897f634d34362d4a3a3f81 316 Gene3D G3DSA:3.30.70.2130 162 222 3.0E-6 T 12-10-2018 Alide_2078 f004955b2fca9571722fc5d2038c81ed 529 Pfam PF06074 Protein of unknown function (DUF935) 6 521 2.0E-178 T 12-10-2018 IPR009279 Protein of unknown function DUF935 Alide_3852 a55a8bd3db3701812185bde17f940c51 455 Gene3D G3DSA:3.30.750.140 309 427 9.8E-14 T 12-10-2018 IPR038610 FliK-like, C-terminal domain superfamily Alide_3852 a55a8bd3db3701812185bde17f940c51 455 Pfam PF02120 Flagellar hook-length control protein FliK 330 409 1.0E-13 T 12-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal Alide_2249 56df51d2df6d3fb78ae0cb49ad2462fb 219 Pfam PF07589 PEP-CTERM motif 194 217 3.5E-8 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_2249 56df51d2df6d3fb78ae0cb49ad2462fb 219 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 195 218 2.2E-6 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_2278 e1bbfd21c32b33afde06de9f3673ba03 153 Gene3D G3DSA:3.10.129.10 9 153 5.7E-41 T 12-10-2018 Alide_2278 e1bbfd21c32b33afde06de9f3673ba03 153 SUPERFAMILY SSF54637 9 151 3.48E-32 T 12-10-2018 IPR029069 HotDog domain superfamily Alide_2278 e1bbfd21c32b33afde06de9f3673ba03 153 Pfam PF01575 MaoC like domain 24 118 1.5E-12 T 12-10-2018 IPR002539 MaoC-like dehydratase domain Alide_2977 96b55be1187554574ed07bee249f8cfe 227 Gene3D G3DSA:3.40.109.10 1 223 4.7E-56 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Alide_2977 96b55be1187554574ed07bee249f8cfe 227 Pfam PF00881 Nitroreductase family 16 203 5.5E-25 T 12-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Alide_2977 96b55be1187554574ed07bee249f8cfe 227 SUPERFAMILY SSF55469 11 225 4.71E-41 T 12-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Alide_0031 e9fef72b40bf51737a5d0256ecff5c98 313 Pfam PF04381 Putative exonuclease, RdgC 2 293 5.2E-111 T 12-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 Alide_0780 d7b621c2d78b8146885c3ec3dea846fd 160 Pfam PF05981 CreA protein 27 152 4.9E-56 T 12-10-2018 IPR010292 Uncharacterised protein family CreA Alide_0780 d7b621c2d78b8146885c3ec3dea846fd 160 PIRSF PIRSF003174 1 160 1.0E-67 T 12-10-2018 IPR010292 Uncharacterised protein family CreA Alide_1023 273930622eec21afcbf36e538d10e953 169 SUPERFAMILY SSF69255 5 82 1.44E-16 T 12-10-2018 Alide_1023 273930622eec21afcbf36e538d10e953 169 Gene3D G3DSA:2.40.50.230 10 86 3.6E-7 T 12-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Alide_0790 f8991b1df2dcd13ed55e30670393a484 175 Gene3D G3DSA:1.20.120.30 42 166 9.4E-6 T 12-10-2018 Alide_0790 f8991b1df2dcd13ed55e30670393a484 175 Pfam PF13682 Chemoreceptor zinc-binding domain 55 121 6.6E-7 T 12-10-2018 IPR025991 Chemoreceptor zinc-binding domain Alide_3408 8b744682872699855d88ef984cfbb182 405 Pfam PF03594 Benzoate membrane transport protein 18 388 3.4E-133 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 Alide_3408 8b744682872699855d88ef984cfbb182 405 TIGRFAM TIGR00843 benE: benzoate transporter 18 389 1.6E-114 T 12-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 Alide_3242 a0b319596cc5fe0a6256e6f5a6572abe 167 Pfam PF01661 Macro domain 28 138 4.3E-8 T 12-10-2018 IPR002589 Macro domain Alide_3242 a0b319596cc5fe0a6256e6f5a6572abe 167 SMART SM00506 1 140 1.5E-12 T 12-10-2018 IPR002589 Macro domain Alide_3242 a0b319596cc5fe0a6256e6f5a6572abe 167 Gene3D G3DSA:3.40.220.10 1 155 1.6E-30 T 12-10-2018 Alide_3242 a0b319596cc5fe0a6256e6f5a6572abe 167 SUPERFAMILY SSF52949 1 155 3.87E-34 T 12-10-2018 Alide_1538 9b985589cbdd4bda8ea6c32fe9319481 532 Pfam PF02646 RmuC family 190 487 1.9E-99 T 12-10-2018 IPR003798 DNA recombination RmuC Alide_3892 de0f98b201e317acc7c1cac2a0e41cba 199 Pfam PF01810 LysE type translocator 15 195 9.8E-10 T 12-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 Alide_1154 4bdd7bb3c0e7dd16bee141f79f7d84ce 65 Pfam PF11127 Protein of unknown function (DUF2892) 1 61 5.0E-23 T 12-10-2018 IPR021309 Protein of unknown function DUF2892 Alide_3823 aadc0549fc55cdadb25f7db95ef0323a 300 Pfam PF06675 Protein of unknown function (DUF1177) 33 295 6.3E-111 T 12-10-2018 IPR009561 Protein of unknown function DUF1177 Alide_3473 cd18f243bbd06fbb648c08020084f759 420 Gene3D G3DSA:1.20.1600.10 33 404 3.8E-27 T 12-10-2018 Alide_3473 cd18f243bbd06fbb648c08020084f759 420 SUPERFAMILY SSF56954 2 401 2.88E-31 T 12-10-2018 Alide_3473 cd18f243bbd06fbb648c08020084f759 420 Pfam PF02321 Outer membrane efflux protein 233 399 1.0E-7 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2645 bd4f7e157ec9f40b68d16cf3aba4683f 448 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 12-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 Alide_2645 bd4f7e157ec9f40b68d16cf3aba4683f 448 SUPERFAMILY SSF103473 12 438 1.57E-68 T 12-10-2018 IPR036259 MFS transporter superfamily Alide_2645 bd4f7e157ec9f40b68d16cf3aba4683f 448 Pfam PF07690 Major Facilitator Superfamily 30 349 1.0E-29 T 12-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Alide_2645 bd4f7e157ec9f40b68d16cf3aba4683f 448 Gene3D G3DSA:1.20.1250.20 20 434 1.4E-57 T 12-10-2018 Alide_4477 72761075d157b5c18bbfd75d74cd5016 260 SUPERFAMILY SSF54427 117 258 3.37E-23 T 12-10-2018 IPR032710 NTF2-like domain superfamily Alide_4477 72761075d157b5c18bbfd75d74cd5016 260 Pfam PF04335 VirB8 protein 47 258 2.2E-61 T 12-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 Alide_4477 72761075d157b5c18bbfd75d74cd5016 260 Gene3D G3DSA:3.10.450.230 147 258 1.6E-7 T 12-10-2018 Alide_2144 127b8c2d25c96b2045d3d3584a5c6ca6 231 Pfam PF04172 LrgB-like family 17 228 2.5E-64 T 12-10-2018 IPR007300 CidB/LrgB family Alide_0004 fd1d330440c5cfde55d7089bd521d169 137 Pfam PF03692 Putative zinc- or iron-chelating domain 24 125 2.9E-13 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Alide_2006 191a5ec1f600c53bbb845a32cc074005 293 Gene3D G3DSA:3.90.79.10 9 245 7.8E-62 T 12-10-2018 Alide_2006 191a5ec1f600c53bbb845a32cc074005 293 SUPERFAMILY SSF55811 11 214 1.89E-16 T 12-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Alide_1862 1057fe3685ef0cfbd42a2736f587b257 154 SUPERFAMILY SSF109709 75 128 9.55E-9 T 12-10-2018 Alide_1862 1057fe3685ef0cfbd42a2736f587b257 154 Gene3D G3DSA:1.10.10.2830 76 135 7.9E-7 T 12-10-2018 Alide_3879 7af2f57f58a89f486d86d88da7cf3037 134 Pfam PF00460 Flagella basal body rod protein 7 36 6.4E-9 T 12-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Alide_3879 7af2f57f58a89f486d86d88da7cf3037 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 1.6E-48 T 12-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 Alide_3879 7af2f57f58a89f486d86d88da7cf3037 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 132 7.3E-13 T 12-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Alide_4327 baddf731367f88aab5307082ca9dc1ad 105 Pfam PF03413 Peptidase propeptide and YPEB domain 43 99 2.7E-10 T 12-10-2018 IPR025711 PepSY domain Alide_4327 baddf731367f88aab5307082ca9dc1ad 105 Gene3D G3DSA:3.10.450.40 32 102 1.7E-11 T 12-10-2018 Alide_3479 70b05e0f297c6f76257d58f352305026 385 Pfam PF02628 Cytochrome oxidase assembly protein 48 360 1.1E-76 T 12-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 Alide_4608 882954498f4799605afb2ca895c1d2ac 319 Pfam PF04982 HPP family 230 313 6.7E-8 T 12-10-2018 IPR007065 HPP Alide_3115 0f117bbd5d0c4c00c4ccdb7a44f14a54 195 Pfam PF01292 Prokaryotic cytochrome b561 11 186 1.9E-28 T 12-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Alide_3115 0f117bbd5d0c4c00c4ccdb7a44f14a54 195 SUPERFAMILY SSF81342 9 188 1.02E-39 T 12-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Alide_3146 0b2e8ec0ee86550ade0168cd29197163 238 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 9 230 35.697 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Alide_3146 0b2e8ec0ee86550ade0168cd29197163 238 Gene3D G3DSA:3.20.20.70 7 233 6.2E-56 T 12-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Alide_3146 0b2e8ec0ee86550ade0168cd29197163 238 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 11 225 5.2E-35 T 12-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Alide_3146 0b2e8ec0ee86550ade0168cd29197163 238 SUPERFAMILY SSF51366 9 228 4.39E-47 T 12-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Alide_3820 ebda843089078f9f11ee676857ceba50 164 Pfam PF04239 Protein of unknown function (DUF421) 92 154 1.6E-13 T 12-10-2018 IPR007353 Protein of unknown function DUF421 Alide_3820 ebda843089078f9f11ee676857ceba50 164 Gene3D G3DSA:3.30.240.20 84 155 9.1E-18 T 12-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily Alide_4085 03af8636ed82202c473dd59e3507d3ca 211 Pfam PF05036 Sporulation related domain 136 208 1.7E-17 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 Alide_4085 03af8636ed82202c473dd59e3507d3ca 211 SUPERFAMILY SSF110997 134 209 4.45E-20 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Alide_4085 03af8636ed82202c473dd59e3507d3ca 211 Gene3D G3DSA:3.30.70.1070 130 210 9.4E-19 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Alide_3535 06b0eacdcc4969bb37f5d9107223f28d 415 Gene3D G3DSA:1.10.530.70 19 188 1.7E-18 T 12-10-2018 Alide_3535 06b0eacdcc4969bb37f5d9107223f28d 415 SUPERFAMILY SSF53955 14 195 2.45E-35 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_4485 25c4bed42e2cdd33075f25ea528f40bf 211 Pfam PF01464 Transglycosylase SLT domain 17 113 5.0E-5 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_4485 25c4bed42e2cdd33075f25ea528f40bf 211 SUPERFAMILY SSF53955 9 125 6.57E-23 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_4527 872c56d8d3eb15cbe2ce9aba9f604610 168 Pfam PF01464 Transglycosylase SLT domain 20 121 2.2E-20 T 12-10-2018 IPR008258 Transglycosylase SLT domain 1 Alide_4527 872c56d8d3eb15cbe2ce9aba9f604610 168 SUPERFAMILY SSF53955 12 133 2.23E-34 T 12-10-2018 IPR023346 Lysozyme-like domain superfamily Alide_4527 872c56d8d3eb15cbe2ce9aba9f604610 168 Gene3D G3DSA:1.10.530.10 17 160 1.9E-19 T 12-10-2018 Alide_4252 085c84400d864f0b61d88a3911f8c7c7 156 SUPERFAMILY SSF52402 1 104 4.69E-5 T 12-10-2018 Alide_3550 20ee47561d58dc8ef867e9d48dd68039 538 Pfam PF05136 Phage portal protein, lambda family 40 406 1.4E-99 T 12-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 Alide_3550 20ee47561d58dc8ef867e9d48dd68039 538 TIGRFAM TIGR01539 portal_lambda: phage portal protein, lambda family 39 508 3.3E-84 T 12-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 Alide_1251 d9e709a2a05d9e0cb8e3273d8ec16d3c 236 Gene3D G3DSA:3.40.50.10190 144 236 2.8E-7 T 12-10-2018 IPR036420 BRCT domain superfamily Alide_1251 d9e709a2a05d9e0cb8e3273d8ec16d3c 236 Pfam PF13280 WYL domain 71 125 2.1E-9 T 12-10-2018 IPR026881 WYL domain Alide_3542 f0a837c3b904b5458dc5e77e416b367c 1054 Gene3D G3DSA:2.60.120.260 828 932 5.6E-5 T 12-10-2018 IPR008979 Galactose-binding-like domain superfamily Alide_1228 9b1dea962e18e7be729e49b555dfcb08 1355 Pfam PF02514 CobN/Magnesium Chelatase 126 1226 1.1E-282 T 12-10-2018 IPR003672 CobN/magnesium chelatase GO:0009058 Alide_1363 c12cad9367cb99d8e855e1dfd972d7a9 357 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 336 3.0E-39 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_1386 7ffa9fd5f77effffc264b71a685f4dc4 115 Pfam PF03692 Putative zinc- or iron-chelating domain 7 88 2.3E-8 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Alide_0343 51bef5623e86153588bd73f42aa01bd4 212 Pfam PF00753 Metallo-beta-lactamase superfamily 10 183 5.9E-30 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_0343 51bef5623e86153588bd73f42aa01bd4 212 SMART SM00849 13 193 1.2E-36 T 12-10-2018 IPR001279 Metallo-beta-lactamase Alide_0343 51bef5623e86153588bd73f42aa01bd4 212 Gene3D G3DSA:3.60.15.10 2 211 1.3E-76 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_0343 51bef5623e86153588bd73f42aa01bd4 212 SUPERFAMILY SSF56281 2 209 1.04E-55 T 12-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Alide_2519 e608792fe72b1bb56100b5a099a30e5a 90 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 49 7.8E-9 T 12-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain Alide_2519 e608792fe72b1bb56100b5a099a30e5a 90 Gene3D G3DSA:1.10.10.1100 1 55 1.5E-13 T 12-10-2018 Alide_2545 e8d42fc1c2a99c50561067f577711686 276 Pfam PF09955 Predicted integral membrane protein (DUF2189) 71 193 1.7E-37 T 12-10-2018 IPR018692 Predicted integral membrane protein DUF2189 Alide_1281 fdb32b3d4408e9c4eac848190c8738f2 234 Pfam PF05944 Phage small terminase subunit 40 168 6.0E-39 T 12-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 Alide_0242 3eb94eb53e5704b192091d8a03214271 116 Pfam PF11171 Protein of unknown function (DUF2958) 5 115 7.7E-45 T 12-10-2018 IPR021341 Protein of unknown function DUF2958 Alide_2618 9100b0eee6191f3920f174935cfbb2fb 108 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 8 95 1.5E-12 T 12-10-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system Alide_2605 0146be547d4a94610c382009e3b2b4a0 657 Pfam PF01136 Peptidase family U32 78 307 8.3E-69 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Alide_2605 0146be547d4a94610c382009e3b2b4a0 657 ProSitePatterns PS01276 Peptidase family U32 signature. 164 182 - T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Alide_2605 0146be547d4a94610c382009e3b2b4a0 657 SUPERFAMILY SSF51395 17 158 4.39E-6 T 12-10-2018 Alide_2605 0146be547d4a94610c382009e3b2b4a0 657 Pfam PF12392 Collagenase 397 510 4.1E-21 T 12-10-2018 IPR020988 Peptidase U32, collagenase Alide_1020 1e3c65c74caf5be63835fe62e2f99044 830 TIGRFAM TIGR02243 TIGR02243: putative baseplate assembly protein 508 781 8.2E-51 T 12-10-2018 IPR011749 Conserved hypothetical protein CHP02243 Alide_1020 1e3c65c74caf5be63835fe62e2f99044 830 Pfam PF04865 Baseplate J-like protein 582 734 1.3E-5 T 12-10-2018 IPR006949 Baseplate protein J-like Alide_3587 cb84a8211fa23aaa278a12239e6fb245 378 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 79 286 1.8E-11 T 12-10-2018 IPR000477 Reverse transcriptase domain Alide_3587 cb84a8211fa23aaa278a12239e6fb245 378 SUPERFAMILY SSF56672 44 358 1.63E-21 T 12-10-2018 Alide_3529 cad4cc9dbd0c90fe42d362fc45af545c 1362 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1009 1361 4.7E-60 T 12-10-2018 IPR007452 Translocation and assembly module TamB Alide_1628 466537f97d28c7c1c48f740733d4f274 405 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 298 390 9.2E-28 T 12-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 Alide_4208 1eb4020f88af52337ef01f74b511862c 123 Pfam PF09722 Protein of unknown function (DUF2384) 72 120 1.9E-8 T 12-10-2018 IPR024467 Domain of unknown function DUF2384 Alide_2857 8d8c3aef9a97db5ff42dcd022ea524c6 399 Pfam PF09982 Uncharacterized protein conserved in bacteria (DUF2219) 66 397 1.3E-89 T 12-10-2018 IPR018707 Protein of unknown function DUF2219 Alide_2857 8d8c3aef9a97db5ff42dcd022ea524c6 399 Gene3D G3DSA:2.40.128.140 109 397 6.6E-62 T 12-10-2018 IPR037107 Putative outer membrane protein superfamily Alide_2671 36bc5f415057eed7c876a597c8a0d2b6 352 Pfam PF01594 AI-2E family transporter 12 341 2.7E-52 T 12-10-2018 IPR002549 Transmembrane protein TqsA-like Alide_3113 3ea95cc336e6b1f410cfa594cba85707 191 Gene3D G3DSA:2.40.128.110 24 191 3.8E-44 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Alide_3113 3ea95cc336e6b1f410cfa594cba85707 191 SUPERFAMILY SSF101874 24 191 1.18E-47 T 12-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Alide_3113 3ea95cc336e6b1f410cfa594cba85707 191 SMART SM00867 25 189 6.0E-56 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Alide_3113 3ea95cc336e6b1f410cfa594cba85707 191 Pfam PF04264 YceI-like domain 26 188 1.0E-34 T 12-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Alide_1139 89ef7605f86b60b488632f535919d547 437 Pfam PF10923 P-loop Domain of unknown function (DUF2791) 10 410 4.0E-159 T 12-10-2018 IPR021228 Protein of unknown function DUF2791 Alide_1139 89ef7605f86b60b488632f535919d547 437 SUPERFAMILY SSF52540 37 344 3.04E-6 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_3848 0ab44e3231ab56f544b4eaa297125743 121 Pfam PF04347 Flagellar biosynthesis protein, FliO 28 105 8.7E-16 T 12-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 Alide_3197 cfd8ff3066e8151582a69901c6b4fa64 257 Pfam PF03883 Peroxide stress protein YaaA 1 243 3.7E-88 T 12-10-2018 IPR005583 Peroxide stress protein YaaA Alide_3197 cfd8ff3066e8151582a69901c6b4fa64 257 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 256 33.936 T 12-10-2018 IPR005583 Peroxide stress protein YaaA Alide_4049 aeef7270c9fa1d47bd8e034511f30241 123 Pfam PF09722 Protein of unknown function (DUF2384) 71 120 2.0E-5 T 12-10-2018 IPR024467 Domain of unknown function DUF2384 Alide_0295 245cd774d8af4b9d61527d75d378e38b 474 Pfam PF01425 Amidase 26 454 6.4E-95 T 12-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_0295 245cd774d8af4b9d61527d75d378e38b 474 Gene3D G3DSA:3.90.1300.10 3 472 5.1E-135 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_0295 245cd774d8af4b9d61527d75d378e38b 474 SUPERFAMILY SSF75304 4 463 1.83E-125 T 12-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Alide_4026 e180707612587d2a47cffc8bdf0292d7 149 TIGRFAM TIGR03751 conj_TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family 15 145 7.3E-52 T 12-10-2018 IPR022262 Lipoprotein, putative Alide_3081 b968da8e0d9237851bfff81d8fa81042 271 Pfam PF12679 ABC-2 family transporter protein 7 270 4.5E-36 T 12-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 Alide_2816 df91f609b48667398f106e599ac2b88a 215 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 6 146 3.1E-39 T 12-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO Alide_2816 df91f609b48667398f106e599ac2b88a 215 Gene3D G3DSA:1.10.760.10 34 187 7.8E-49 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2816 df91f609b48667398f106e599ac2b88a 215 SUPERFAMILY SSF46626 41 184 5.58E-22 T 12-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 Alide_2875 fe27838193a563c981f09132700340f1 661 Pfam PF11843 Protein of unknown function (DUF3363) 287 658 1.6E-142 T 12-10-2018 IPR021795 Protein of unknown function DUF3363 Alide_2318 676d74bafa597f55d5552d3a5a7a241e 242 Pfam PF01569 PAP2 superfamily 89 212 5.7E-7 T 12-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Alide_2318 676d74bafa597f55d5552d3a5a7a241e 242 SUPERFAMILY SSF48317 7 222 2.09E-8 T 12-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Alide_3116 49f44f2b16a9b3441c8d28545919d921 229 Gene3D G3DSA:3.40.1550.10 12 176 5.0E-17 T 12-10-2018 IPR028976 CheC-like superfamily Alide_3116 49f44f2b16a9b3441c8d28545919d921 229 SUPERFAMILY SSF103039 19 174 7.06E-21 T 12-10-2018 IPR028976 CheC-like superfamily Alide_3116 49f44f2b16a9b3441c8d28545919d921 229 Pfam PF11813 Protein of unknown function (DUF3334) 8 229 3.0E-115 T 12-10-2018 IPR024513 Protein of unknown function DUF3334 Alide_4484 dfb640321c37dca29e193f5407a70813 195 Pfam PF07424 TrbM 27 178 1.2E-64 T 12-10-2018 IPR009989 TrbM Alide_0676 7b9ba5bd20f0c107830afc89159c5543 142 Gene3D G3DSA:2.40.128.520 24 142 5.1E-12 T 12-10-2018 Alide_0676 7b9ba5bd20f0c107830afc89159c5543 142 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 25 140 5.9E-27 T 12-10-2018 IPR019223 Domain of unknown function DUF2147 Alide_1916 9fe346e41cd7162017d83a372e3f39a0 729 PIRSF PIRSF011409 3 729 2.0E-227 T 12-10-2018 IPR016582 D-(-)-3-hydroxybutyrate oligomer hydrolase, putative GO:0005615|GO:0019605|GO:0047989 KEGG: 00650+3.1.1.22 Alide_1916 9fe346e41cd7162017d83a372e3f39a0 729 Pfam PF10605 3HB-oligomer hydrolase (3HBOH) 22 728 3.4E-287 T 12-10-2018 IPR016582 D-(-)-3-hydroxybutyrate oligomer hydrolase, putative GO:0005615|GO:0019605|GO:0047989 KEGG: 00650+3.1.1.22 Alide_1219 d53b1f4155ee7f069b379beea91bcb00 161 SUPERFAMILY SSF110087 8 145 4.18E-45 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily Alide_1219 d53b1f4155ee7f069b379beea91bcb00 161 Gene3D G3DSA:2.60.40.1890 31 147 5.1E-37 T 12-10-2018 IPR036182 Copper chaperone PCuAC superfamily Alide_1219 d53b1f4155ee7f069b379beea91bcb00 161 Pfam PF04314 Copper chaperone PCu(A)C 28 129 3.7E-36 T 12-10-2018 IPR007410 Copper chaperone PCuAC Alide_2539 67357a74c44b767ad09b9144e93a09da 127 Gene3D G3DSA:3.10.180.10 1 127 2.1E-23 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2539 67357a74c44b767ad09b9144e93a09da 127 SUPERFAMILY SSF54593 1 126 3.09E-18 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_0993 5c1e07a2efb1a83f01271cf38f731162 224 SUPERFAMILY SSF89562 23 185 4.97E-47 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_0993 5c1e07a2efb1a83f01271cf38f731162 224 Pfam PF03737 Aldolase/RraA 27 173 1.2E-43 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_0993 5c1e07a2efb1a83f01271cf38f731162 224 Gene3D G3DSA:3.50.30.100 4 196 1.5E-55 T 12-10-2018 Alide_0240 81a699a2aa7f7669f7eab3c8198dcccd 93 Pfam PF12728 Helix-turn-helix domain 22 72 7.1E-10 T 12-10-2018 Alide_0240 81a699a2aa7f7669f7eab3c8198dcccd 93 SUPERFAMILY SSF46955 21 77 8.42E-9 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_0656 61d2d4c1d49c9341023c2c47efed299e 182 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 79 172 2.2E-14 T 12-10-2018 IPR034756 Type II secretion system (T2SS), protein M subtype b Alide_1895 5d787349d474b490a9c1d501a4a57ee1 188 Pfam PF05425 Copper resistance protein D 83 186 4.1E-15 T 12-10-2018 IPR008457 Copper resistance protein D GO:0016021 Alide_0671 a98e7b230739fc8e375c6f7808e3cee6 366 Pfam PF00953 Glycosyl transferase family 4 82 238 1.9E-28 T 12-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Alide_2883 11de8d033a1d6cdae7fa9221a69602ca 278 Gene3D G3DSA:3.90.226.10 20 278 2.4E-69 T 12-10-2018 Alide_2883 11de8d033a1d6cdae7fa9221a69602ca 278 Pfam PF00378 Enoyl-CoA hydratase/isomerase 29 277 3.5E-50 T 12-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 Alide_2883 11de8d033a1d6cdae7fa9221a69602ca 278 SUPERFAMILY SSF52096 11 277 1.25E-67 T 12-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Alide_4543 4125c6ded34a2a321b09e8e24a619ed9 326 Pfam PF13728 F plasmid transfer operon protein 41 270 1.7E-55 T 12-10-2018 IPR039555 F plasmid transfer operon protein Alide_2103 ab90b3b342efdc7bb425d3b425ec7488 178 Pfam PF14301 Domain of unknown function (DUF4376) 73 166 4.4E-15 T 12-10-2018 IPR025484 Domain of unknown function DUF4376 Alide_4035 12238a3634e0409d8ad28cf17b6a24dd 119 Pfam PF12553 Protein of unknown function (DUF3742) 1 119 2.2E-50 T 12-10-2018 IPR022213 Protein of unknown function DUF3742 Alide_2400 cd0762dcfa0bb2b41048492a4fb064b2 404 Pfam PF05940 NnrS protein 26 398 3.8E-105 T 12-10-2018 IPR010266 NnrS Alide_2833 23c548904dc6c750fa8cb2d99bce2c70 90 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 12 79 1.4E-10 T 12-10-2018 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB Alide_2833 23c548904dc6c750fa8cb2d99bce2c70 90 PIRSF PIRSF017854 5 90 1.7E-35 T 12-10-2018 IPR016704 Conjugal transfer, TrbD Alide_2833 23c548904dc6c750fa8cb2d99bce2c70 90 ProDom PD012561 TRBD PLASMID CONJUGAL TRANSFER PRECURSOR SIGNAL MATING FORMATION PROBABLE PAIR 15 85 0.001 T 12-10-2018 Alide_1261 f698e3add302ac4d19fd66a5f07626d7 169 Pfam PF04985 Phage tail tube protein FII 4 168 2.4E-60 T 12-10-2018 IPR006498 Tail tube protein Alide_1261 f698e3add302ac4d19fd66a5f07626d7 169 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 4 168 2.9E-58 T 12-10-2018 IPR006498 Tail tube protein Alide_2802 6273e8a3f33e7fd60f31aae3add73fa1 422 Pfam PF02321 Outer membrane efflux protein 258 418 5.4E-8 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2802 6273e8a3f33e7fd60f31aae3add73fa1 422 Pfam PF02321 Outer membrane efflux protein 40 214 2.7E-9 T 12-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Alide_2802 6273e8a3f33e7fd60f31aae3add73fa1 422 Gene3D G3DSA:1.20.1600.10 11 421 2.0E-37 T 12-10-2018 Alide_2802 6273e8a3f33e7fd60f31aae3add73fa1 422 SUPERFAMILY SSF56954 6 421 7.72E-44 T 12-10-2018 Alide_4539 c84ec08c0286e60337def4abe7151a59 329 Pfam PF09673 Type-F conjugative transfer system pilin assembly protein 29 114 1.4E-11 T 12-10-2018 IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC Alide_0056 223188ca3fdcf4ec4580cf8519f6a282 346 Gene3D G3DSA:1.10.101.10 278 346 7.0E-16 T 12-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 Alide_0056 223188ca3fdcf4ec4580cf8519f6a282 346 Pfam PF01471 Putative peptidoglycan binding domain 292 344 3.7E-19 T 12-10-2018 IPR002477 Peptidoglycan binding-like Alide_0056 223188ca3fdcf4ec4580cf8519f6a282 346 SUPERFAMILY SSF47090 292 344 2.51E-15 T 12-10-2018 IPR036365 PGBD-like superfamily Alide_1575 2391ef288aaba71372de01fb92939c06 650 Pfam PF08707 Primase C terminal 2 (PriCT-2) 8 77 1.3E-16 T 12-10-2018 IPR014819 Primase, C-terminal 2 GO:0016817 Alide_1575 2391ef288aaba71372de01fb92939c06 650 Gene3D G3DSA:3.40.50.300 320 559 1.0E-39 T 12-10-2018 Alide_1575 2391ef288aaba71372de01fb92939c06 650 Pfam PF13481 AAA domain 322 502 3.6E-37 T 12-10-2018 Alide_1575 2391ef288aaba71372de01fb92939c06 650 SUPERFAMILY SSF52540 336 543 7.97E-13 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_1336 9f3e71ba7874a502443acf41962020d0 244 SUPERFAMILY SSF161098 18 226 1.09E-28 T 12-10-2018 IPR035906 MetI-like superfamily Alide_1336 9f3e71ba7874a502443acf41962020d0 244 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 228 9.6E-7 T 12-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Alide_1336 9f3e71ba7874a502443acf41962020d0 244 Gene3D G3DSA:1.10.3720.10 2 234 2.6E-25 T 12-10-2018 IPR035906 MetI-like superfamily Alide_3003 dea5d217c7a219257bb32f8eded6920a 217 Pfam PF00691 OmpA family 96 202 3.4E-19 T 12-10-2018 IPR006665 OmpA-like domain Alide_3003 dea5d217c7a219257bb32f8eded6920a 217 Gene3D G3DSA:3.30.1330.60 44 214 2.0E-37 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_3003 dea5d217c7a219257bb32f8eded6920a 217 SUPERFAMILY SSF103088 84 206 6.8E-27 T 12-10-2018 IPR036737 OmpA-like domain superfamily Alide_0884 eecead5567a017cdd6765a0aff1e421b 333 SUPERFAMILY SSF48452 204 317 1.42E-8 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0884 eecead5567a017cdd6765a0aff1e421b 333 Gene3D G3DSA:1.25.40.10 143 316 7.6E-10 T 12-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Alide_0064 aa8630f72a3bc3f24adc3fa9bdde4388 400 Pfam PF04233 Phage Mu protein F like protein 63 187 2.6E-11 T 12-10-2018 IPR006528 Phage head morphogenesis domain Alide_3855 3b495d803a6e9aa10f884b6c9b660f86 241 Pfam PF02108 Flagellar assembly protein FliH 98 223 2.0E-30 T 12-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE Alide_2739 93d8e5127ed2a05a86bd40a0bba50d6b 292 Pfam PF05275 Copper resistance protein B precursor (CopB) 86 292 3.4E-82 T 12-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 Alide_2739 93d8e5127ed2a05a86bd40a0bba50d6b 292 SUPERFAMILY SSF103515 192 289 8.5E-8 T 12-10-2018 IPR036709 Autotransporter beta-domain superfamily Alide_2129 a073d211e4f33f4ead466daae987c7de 399 Pfam PF12704 MacB-like periplasmic core domain 18 253 2.4E-14 T 12-10-2018 IPR025857 MacB-like periplasmic core domain Alide_2129 a073d211e4f33f4ead466daae987c7de 399 Pfam PF02687 FtsX-like permease family 311 394 3.2E-7 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Alide_3995 fd37ecfa30021a0daaedcd353ac7e38c 70 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 12 62 3.2E-25 T 12-10-2018 IPR010260 DNA-binding transcriptional activator AlpA Alide_0334 c530f8837386609b8ce62a2117acb8da 301 Pfam PF13557 Putative MetA-pathway of phenol degradation 64 282 3.2E-39 T 12-10-2018 IPR025737 MetA-pathway of phenol degradation, putative Alide_1424 67011269719b0486a6fb0a607a2c2db0 91 Pfam PF03788 LrgA family 1 72 7.1E-14 T 12-10-2018 IPR005538 LrgA/CidA family GO:0016021 Alide_2037 57be21e7b5c5eb98e3b5aab28c5431df 292 Pfam PF11219 Protein of unknown function (DUF3014) 112 278 4.3E-62 T 12-10-2018 IPR021382 Protein of unknown function DUF3014 Alide_4635 e7de2048ca7179b912390a44c5d0a0eb 190 SUPERFAMILY SSF54909 42 172 3.75E-16 T 12-10-2018 IPR011008 Dimeric alpha-beta barrel Alide_4635 e7de2048ca7179b912390a44c5d0a0eb 190 Pfam PF06778 Chlorite dismutase 39 169 3.6E-8 T 12-10-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase Alide_4635 e7de2048ca7179b912390a44c5d0a0eb 190 Gene3D G3DSA:3.30.70.3420 4 176 3.3E-60 T 12-10-2018 Alide_1865 0dc579feb13a24e9f3f00cbcc0174bc9 148 Pfam PF11149 Protein of unknown function (DUF2924) 10 143 2.7E-45 T 12-10-2018 IPR021322 Protein of unknown function DUF2924 Alide_4616 0c86196b7ed4aaab091c1c8f61d4cbf1 95 TIGRFAM TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein 2 72 3.3E-21 T 12-10-2018 IPR014299 Pentapeptide MXKDX repeat protein Alide_0831 c662c0fee6023515c73fddc7489abb17 732 Pfam PF05140 ResB-like family 27 707 4.2E-154 T 12-10-2018 IPR007816 ResB-like domain Alide_4302 5e58caa68e9558ea5ce64e251ed7f6be 361 Pfam PF13609 Gram-negative porin 15 336 1.8E-42 T 12-10-2018 Alide_4302 5e58caa68e9558ea5ce64e251ed7f6be 361 Gene3D G3DSA:2.40.160.10 28 361 1.3E-66 T 12-10-2018 IPR023614 Porin domain superfamily Alide_4302 5e58caa68e9558ea5ce64e251ed7f6be 361 SUPERFAMILY SSF56935 29 361 1.86E-61 T 12-10-2018 Alide_3159 b2e525c4c95b0809cd0efc73e80b4ceb 208 Pfam PF02397 Bacterial sugar transferase 3 196 2.6E-58 T 12-10-2018 IPR003362 Bacterial sugar transferase Alide_3490 ac8865adcf41f18f36071c950f9694f8 245 Pfam PF00156 Phosphoribosyl transferase domain 198 243 3.7E-9 T 12-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Alide_3490 ac8865adcf41f18f36071c950f9694f8 245 Gene3D G3DSA:3.40.50.2020 84 245 1.6E-21 T 12-10-2018 Alide_3490 ac8865adcf41f18f36071c950f9694f8 245 SUPERFAMILY SSF53271 69 243 1.97E-31 T 12-10-2018 IPR029057 Phosphoribosyltransferase-like Alide_3468 3c72bb057896574cb14abce1f8a55842 231 Pfam PF01988 VIT family 17 224 1.5E-54 T 12-10-2018 IPR008217 Ccc1 family Alide_2973 43e12de93e74292791fe2e751303d3c0 305 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 281 1.8E-29 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3588 a9fe2c5c891f0b65fdc2bad746f792e8 348 Pfam PF07505 Protein of unknown function (DUF5131) 4 316 6.7E-98 T 12-10-2018 IPR011101 Protein of unknown function DUF5131 Alide_4628 230be8a9f144ef7672b3a72c06979086 73 Pfam PF11455 Protein of unknown function (DUF3018) 9 72 4.1E-24 T 12-10-2018 IPR021558 Protein of unknown function DUF3018 Alide_1915 f8634663befe4b05ff6c70a51625f1ac 509 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 440 1.3E-143 T 12-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane Alide_1877 3d0d36e43dc175d6a4b5eb90d1845dcb 98 SUPERFAMILY SSF54292 14 90 6.03E-14 T 12-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Alide_1877 3d0d36e43dc175d6a4b5eb90d1845dcb 98 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 12 90 5.9E-23 T 12-10-2018 Alide_1877 3d0d36e43dc175d6a4b5eb90d1845dcb 98 Gene3D G3DSA:3.10.20.440 4 96 1.8E-15 T 12-10-2018 Alide_1715 657be590ed8a83ca118b326b783c6e8f 328 Pfam PF05598 Transposase domain (DUF772) 48 122 4.6E-18 T 12-10-2018 IPR008490 Transposase InsH, N-terminal Alide_1715 657be590ed8a83ca118b326b783c6e8f 328 Pfam PF01609 Transposase DDE domain 137 309 5.4E-27 T 12-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Alide_4601 88700da9d45f4a258331e1d94e4f7d15 393 Pfam PF01526 Tn3 transposase DDE domain 2 368 3.8E-114 T 12-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 Alide_0754 9e8224259e409f95126edc0e2cb1c108 337 SUPERFAMILY SSF88713 56 288 1.21E-21 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Alide_0754 9e8224259e409f95126edc0e2cb1c108 337 Pfam PF01522 Polysaccharide deacetylase 96 281 8.8E-15 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Alide_1546 93d991cb8b1e0cef30351dd7980d638e 570 Pfam PF00361 Proton-conducting membrane transporter 142 366 9.5E-24 T 12-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_0446 c633630aa693f81b3f315a0e58a22a30 295 Gene3D G3DSA:3.10.310.50 23 171 9.7E-43 T 12-10-2018 Alide_0446 c633630aa693f81b3f315a0e58a22a30 295 Pfam PF04536 TPM domain 38 161 3.4E-34 T 12-10-2018 IPR007621 TPM domain Alide_2638 51d7491c98979ac6104d5c85bd58657b 197 Pfam PF02361 Cobalt transport protein 10 195 1.8E-11 T 12-10-2018 IPR003339 ABC/ECF transporter, transmembrane component Alide_1262 ce12bdd7ef79f033b1687640fd787392 398 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 115 280 4.4E-26 T 12-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain Alide_1262 ce12bdd7ef79f033b1687640fd787392 398 Pfam PF17482 Phage tail sheath C-terminal domain 282 383 1.1E-17 T 12-10-2018 IPR020287 Tail sheath protein, C-terminal domain Alide_1288 35b83c758119e61b842f7f62d680ccc4 649 Pfam PF05787 Bacterial protein of unknown function (DUF839) 206 560 2.2E-18 T 12-10-2018 IPR008557 Protein of unknown function DUF839 Alide_1536 f43c6d5f7da6de89a897a63b561b3d3a 470 Pfam PF16980 Putative citrate transport 28 470 8.0E-199 T 12-10-2018 IPR031566 Putative citrate transporter Alide_3306 0e9339a0172cd282e3b2c1a3bb74b22e 231 Pfam PF08241 Methyltransferase domain 25 120 3.0E-18 T 12-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Alide_3306 0e9339a0172cd282e3b2c1a3bb74b22e 231 SUPERFAMILY SSF53335 12 131 3.04E-27 T 12-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Alide_4531 ac50ce2df93c7259a7614f5ac0e4ea18 258 Pfam PF05309 TraE protein 1 181 3.8E-29 T 12-10-2018 IPR007973 Pilus assembly TraE GO:0000746 Alide_4460 3fff699f799a5708d865f8f4a6df7b4e 112 Pfam PF01527 Transposase 10 82 3.0E-17 T 12-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Alide_4460 3fff699f799a5708d865f8f4a6df7b4e 112 Gene3D G3DSA:1.10.10.60 14 97 1.1E-11 T 12-10-2018 Alide_4460 3fff699f799a5708d865f8f4a6df7b4e 112 SUPERFAMILY SSF46689 8 96 1.79E-18 T 12-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Alide_1231 b24098fffe55b2cad67f8f557a9bf5f7 107 Pfam PF09919 Uncharacterized conserved protein (DUF2149) 14 102 3.5E-28 T 12-10-2018 IPR018676 Protein of unknown function DUF2149 Alide_1275 ab41d7f4303d87cb186ef89e86f3d8e1 182 Pfam PF10721 Protein of unknown function (DUF2514) 56 170 1.6E-6 T 12-10-2018 IPR019659 Protein of unknown function DUF2514 Alide_0583 0fda573b4f2de778bbea6882bfaef742 201 Pfam PF10816 Domain of unknown function (DUF2760) 79 200 9.5E-56 T 12-10-2018 IPR021212 Domain of unknown function DUF2760 Alide_3326 b05b08dee830d3d4a4e00a6383e65c8c 45 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 8 45 3.7E-11 T 12-10-2018 IPR008621 Cbb3-type cytochrome oxidase component Alide_0794 5b953d7da253fac9a5f42cb229615ae5 169 Pfam PF04612 Type II secretion system (T2SS), protein M 12 151 5.9E-22 T 12-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 Alide_3163 a085706a5384e5608edaaea27c7b5f95 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 1.4E-49 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3235 85049865b69ff7f1b40524f179f958ab 66 Pfam PF04102 SlyX 1 66 3.9E-20 T 12-10-2018 IPR007236 SlyX Alide_0216 b0987f51b9f5bc3c09ec01be0e634702 125 Pfam PF04956 TrbC/VIRB2 family 24 115 3.6E-25 T 12-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 Alide_1511 71595b6f59539c6c8280886dccbbb869 278 Gene3D G3DSA:3.30.70.1070 198 277 1.8E-12 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Alide_1511 71595b6f59539c6c8280886dccbbb869 278 SUPERFAMILY SSF110997 202 275 7.06E-17 T 12-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Alide_1511 71595b6f59539c6c8280886dccbbb869 278 Pfam PF05036 Sporulation related domain 203 276 5.4E-17 T 12-10-2018 IPR007730 Sporulation-like domain GO:0042834 Alide_4580 b48e9bd34a7bdede4f0f56b93aac2107 74 Gene3D G3DSA:1.10.260.40 8 73 3.5E-7 T 12-10-2018 Alide_4580 b48e9bd34a7bdede4f0f56b93aac2107 74 SUPERFAMILY SSF47413 14 61 3.56E-6 T 12-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Alide_0777 d24365d14b34d1d76526beaf34374e3a 526 SUPERFAMILY SSF53474 128 237 1.14E-12 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_0777 d24365d14b34d1d76526beaf34374e3a 526 Gene3D G3DSA:3.40.50.1820 95 294 3.8E-16 T 12-10-2018 IPR029058 Alpha/Beta hydrolase fold Alide_4219 e395eec3ba1f77cc8e8b59776878dfe3 411 Gene3D G3DSA:3.40.720.10 10 401 5.1E-184 T 12-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Alide_4219 e395eec3ba1f77cc8e8b59776878dfe3 411 SUPERFAMILY SSF53649 8 405 1.59E-110 T 12-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Alide_4219 e395eec3ba1f77cc8e8b59776878dfe3 411 TIGRFAM TIGR02335 hydr_PhnA: phosphonoacetate hydrolase 8 409 5.8E-189 T 12-10-2018 IPR012710 Phosphonoacetate hydrolase GO:0047400 KEGG: 00440+3.11.1.2 Alide_4219 e395eec3ba1f77cc8e8b59776878dfe3 411 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 22 357 5.7E-31 T 12-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 Alide_4219 e395eec3ba1f77cc8e8b59776878dfe3 411 Gene3D G3DSA:3.30.1360.110 256 366 5.1E-184 T 12-10-2018 IPR023116 Phosphonoacetate hydrolase, insert domain superfamily KEGG: 00440+3.11.1.2 Alide_0030 7dd0fe9223ea18abdada33e14a191f3e 197 Gene3D G3DSA:1.20.120.1490 60 160 5.7E-7 T 12-10-2018 Alide_0030 7dd0fe9223ea18abdada33e14a191f3e 197 Pfam PF07813 LTXXQ motif family protein 60 150 6.1E-23 T 12-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 Alide_2084 57350af5f1b40a87113ce73e74fe2c17 100 SUPERFAMILY SSF160059 30 89 1.63E-12 T 12-10-2018 Alide_2698 5d537d47c7f6e658efda4c3f6312859e 351 Pfam PF03773 Predicted permease 54 348 1.1E-73 T 12-10-2018 IPR005524 Predicted permease DUF318 Alide_3005 0a802443873af681c79d9770ec9dc688 223 Pfam PF11828 Protein of unknown function (DUF3348) 186 215 1.3E-10 T 12-10-2018 IPR021783 Protein of unknown function DUF3348 Alide_3005 0a802443873af681c79d9770ec9dc688 223 Pfam PF11828 Protein of unknown function (DUF3348) 1 183 2.9E-48 T 12-10-2018 IPR021783 Protein of unknown function DUF3348 Alide_2642 ccc779afc314c887fe379a151c0778ce 138 Gene3D G3DSA:3.10.180.10 1 132 4.1E-46 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2642 ccc779afc314c887fe379a151c0778ce 138 SUPERFAMILY SSF54593 1 129 1.28E-36 T 12-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Alide_2642 ccc779afc314c887fe379a151c0778ce 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 124 1.0E-24 T 12-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Alide_2642 ccc779afc314c887fe379a151c0778ce 138 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 12-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Alide_2642 ccc779afc314c887fe379a151c0778ce 138 ProSitePatterns PS00935 Glyoxalase I signature 2. 70 82 - T 12-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Alide_2642 ccc779afc314c887fe379a151c0778ce 138 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 129 1.2E-62 T 12-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 Alide_2657 f9c2c09db5840002d16d18c2f08b0cca 173 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 32 152 6.8E-21 T 12-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Alide_2944 08f30ab60d02633716850cc5707f3431 206 Pfam PF11136 Protein of unknown function (DUF2889) 24 148 1.5E-33 T 12-10-2018 IPR021312 Protein of unknown function DUF2889 Alide_1500 a89c011ee05b8da94ada89150f1f6160 223 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 16 205 4.3E-54 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 Alide_1500 a89c011ee05b8da94ada89150f1f6160 223 Pfam PF02592 Putative vitamin uptake transporter 45 202 2.1E-35 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 Alide_1500 a89c011ee05b8da94ada89150f1f6160 223 Hamap MF_02088 Probable queuosine precursor transporter. 9 216 15.238 T 12-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 Alide_1560 29bb772048f2860e90c329d183f75b00 444 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 323 5.3E-26 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_1798 7c3a83fa37278c3ca9fc971bd8f10c86 221 Pfam PF03458 UPF0126 domain 107 179 5.4E-21 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 Alide_1798 7c3a83fa37278c3ca9fc971bd8f10c86 221 Pfam PF03458 UPF0126 domain 23 95 1.5E-18 T 12-10-2018 IPR005115 Uncharacterised domain UPF0126 Alide_4025 74b9bdf07006a4397754c88d39b5fb07 472 TIGRFAM TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family 2 462 1.9E-189 T 12-10-2018 IPR021207 Integrating conjugative element protein, PFL4705 Alide_3022 5246a1da244c3052c8196c1196cf3892 267 SUPERFAMILY SSF88713 31 256 3.89E-42 T 12-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Alide_3022 5246a1da244c3052c8196c1196cf3892 267 Pfam PF01522 Polysaccharide deacetylase 33 180 1.1E-19 T 12-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Alide_3022 5246a1da244c3052c8196c1196cf3892 267 Gene3D G3DSA:3.20.20.370 31 258 5.9E-35 T 12-10-2018 Alide_4487 002db597801465de13afcb98cb5c0c74 232 Pfam PF05857 TraX protein 11 221 4.2E-58 T 12-10-2018 IPR008875 TraX Alide_0484 bc387304be234ba23f783e4731317b8e 343 SUPERFAMILY SSF53448 5 266 1.03E-50 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0484 bc387304be234ba23f783e4731317b8e 343 Gene3D G3DSA:3.90.550.10 1 241 6.6E-45 T 12-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Alide_0484 bc387304be234ba23f783e4731317b8e 343 Pfam PF00535 Glycosyl transferase family 2 12 176 2.7E-27 T 12-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Alide_1076 25e98a519e22bca2ae23ee482140b149 305 Pfam PF03547 Membrane transport protein 153 299 3.2E-10 T 12-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Alide_0307 1a4b84dc2668a2aeca9901a4d15caa3b 186 Pfam PF00578 AhpC/TSA family 21 136 1.0E-7 T 12-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Alide_0307 1a4b84dc2668a2aeca9901a4d15caa3b 186 SUPERFAMILY SSF52833 8 162 1.04E-22 T 12-10-2018 IPR036249 Thioredoxin-like superfamily Alide_0307 1a4b84dc2668a2aeca9901a4d15caa3b 186 Gene3D G3DSA:3.40.30.10 4 159 3.9E-32 T 12-10-2018 Alide_0391 f6e1f26890c82b4580477365d19a8f22 177 Gene3D G3DSA:3.50.30.40 10 171 6.3E-44 T 12-10-2018 Alide_0391 f6e1f26890c82b4580477365d19a8f22 177 Pfam PF03737 Aldolase/RraA 14 160 3.9E-30 T 12-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Alide_0391 f6e1f26890c82b4580477365d19a8f22 177 SUPERFAMILY SSF89562 13 164 2.88E-32 T 12-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Alide_0279 a7bb6bdd722124547d0d12b242e4a0f7 355 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 195 351 6.1E-36 T 12-10-2018 IPR017516 AbrB duplication Alide_0279 a7bb6bdd722124547d0d12b242e4a0f7 355 Pfam PF05145 Transition state regulatory protein AbrB 30 351 3.3E-77 T 12-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 Alide_0279 a7bb6bdd722124547d0d12b242e4a0f7 355 PIRSF PIRSF038991 1 354 6.6E-78 T 12-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 Alide_1027 0878fe149e57451eb97ec94f018ae45a 451 Pfam PF13699 Domain of unknown function (DUF4157) 40 116 1.3E-29 T 12-10-2018 IPR025295 Domain of unknown function DUF4157 Alide_4632 867485165d6329ef03453b1bb83edfb9 185 Pfam PF11672 zinc-finger-containing domain 68 180 3.5E-32 T 12-10-2018 IPR021686 Protein of unkown function DUF3268 Alide_1061 f3330b522ef1327dbb1e1f6a47fe8083 154 PIRSF PIRSF032131 1 151 2.8E-44 T 12-10-2018 IPR009562 Protein of unknown function DUF1178 Alide_1061 f3330b522ef1327dbb1e1f6a47fe8083 154 Pfam PF06676 Protein of unknown function (DUF1178) 2 147 4.8E-52 T 12-10-2018 IPR009562 Protein of unknown function DUF1178 Alide_1660 dfb872bec334f3a483b6df1464e3127c 207 Pfam PF07589 PEP-CTERM motif 180 204 1.9E-7 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_1660 dfb872bec334f3a483b6df1464e3127c 207 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 181 204 4.9E-6 T 12-10-2018 IPR013424 PEP-CTERM protein-sorting domain Alide_1442 a477959a2dda211ba9541078d2f3ec7c 82 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 27 75 4.6E-10 T 12-10-2018 IPR010260 DNA-binding transcriptional activator AlpA Alide_0923 fc57d5d75fb058babb06046e51983004 124 SUPERFAMILY SSF46955 8 69 4.07E-7 T 12-10-2018 IPR009061 Putative DNA-binding domain superfamily Alide_3089 405e94a126abd0ca91e7420a632955cc 175 Gene3D G3DSA:3.30.1150.10 53 159 1.8E-5 T 12-10-2018 Alide_2083 0a819894341c17cc75be3335fe450f60 297 Pfam PF10124 Mu-like prophage major head subunit gpT 9 295 1.1E-121 T 12-10-2018 IPR018774 Bacteriophage Mu, GpT Alide_0613 dea4604d69a317b4d0c22eaaf1a3627b 90 Pfam PF13670 Peptidase propeptide and YPEB domain 9 89 3.7E-24 T 12-10-2018 IPR025711 PepSY domain Alide_3819 528ad97f7061ec1dfd677e8f485e26c8 233 Pfam PF13852 Protein of unknown function (DUF4197) 32 230 3.3E-73 T 12-10-2018 IPR025245 Protein of unknown function DUF4197 Alide_1382 a45b86aabd79e3cf8f8bae8d2f8f9ca5 107 Pfam PF03692 Putative zinc- or iron-chelating domain 5 86 5.5E-9 T 12-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Alide_3527 a86e18d558f10c167bd66f56aac51200 395 Pfam PF05762 VWA domain containing CoxE-like protein 188 277 2.1E-8 T 12-10-2018 IPR008912 Uncharacterised protein family CoxE-like Alide_1055 aba0c701000073be3e5022fa16c69581 222 Gene3D G3DSA:1.20.120.1200 6 174 6.2E-42 T 12-10-2018 Alide_1055 aba0c701000073be3e5022fa16c69581 222 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 19 171 1.2E-35 T 12-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Alide_2395 1515613f3b8882d08e511f483edee5d6 191 Pfam PF09335 SNARE associated Golgi protein 24 143 2.3E-16 T 12-10-2018 IPR032816 SNARE associated Golgi protein Alide_0097 246c5529fed792787c0fef7d7ba1545c 389 Pfam PF03929 PepSY-associated TM region 8 358 6.8E-61 T 12-10-2018 IPR005625 PepSY-associated TM protein Alide_3323 69e06fe9c9a0aefb7ee2e7743c5be708 92 Pfam PF05751 FixH 17 70 1.5E-10 T 12-10-2018 IPR008620 Nitrogen fixation protein FixH Alide_2831 e2e7c159ef5e85b57b1e2719ad42cf8b 251 TIGRFAM TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ 9 249 2.3E-65 T 12-10-2018 IPR014147 Type IV conjugative transfer protein TrbJ Alide_1282 8b158ff5b9d91279f5c922853da9e4e7 334 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 8 332 1.0E-109 T 12-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid Alide_1282 8b158ff5b9d91279f5c922853da9e4e7 334 Pfam PF05125 Phage major capsid protein, P2 family 9 331 5.9E-141 T 12-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid Alide_2834 e79d984bca9dea5e064eea9ca2a087f3 128 Pfam PF04956 TrbC/VIRB2 family 27 118 4.2E-25 T 12-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 Alide_3920 53a8fe17244d2f11da2a8fa8d5f628d9 293 Pfam PF02653 Branched-chain amino acid transport system / permease component 13 277 2.1E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_1119 e635c4cacc2f9289227fbe3afaf6f8c5 608 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 13 523 2.9E-109 T 12-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Alide_4012 42eebe0652ea34f476f0e6c471881ac8 199 TIGRFAM TIGR03748 conj_PilL: integrating conjugative element protein PilL, PFGI-1 class 61 164 2.1E-41 T 12-10-2018 IPR022260 Integrating conjugative element protein PilL, PFGI-1 Alide_4541 08168a782f6374079dddb94a75b72093 1330 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 1123 1182 3.0E-9 T 12-10-2018 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN Alide_4541 08168a782f6374079dddb94a75b72093 1330 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 809 954 3.6E-4 T 12-10-2018 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN Alide_3778 fc70ed913c84ba96dbe5f9a76d45f0ca 263 Pfam PF11227 Protein of unknown function (DUF3025) 63 261 3.8E-73 T 12-10-2018 IPR021390 Protein of unknown function DUF3025 Alide_0738 046c8a68c6cfd1d48bdd0c395171234f 320 Pfam PF13614 AAA domain 119 280 5.8E-10 T 12-10-2018 IPR025669 AAA domain Alide_0738 046c8a68c6cfd1d48bdd0c395171234f 320 Gene3D G3DSA:3.40.50.300 42 309 1.2E-53 T 12-10-2018 Alide_0738 046c8a68c6cfd1d48bdd0c395171234f 320 SUPERFAMILY SSF52540 117 292 2.99E-30 T 12-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Alide_0738 046c8a68c6cfd1d48bdd0c395171234f 320 TIGRFAM TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEP-CTERM locus tyrosine autokinase 80 288 1.3E-85 T 12-10-2018 Alide_4436 59fd6789fcd5232b178d101d3079cf77 343 Pfam PF11740 Plasmid replication region DNA-binding N-term 5 119 3.7E-27 T 12-10-2018 IPR021104 KfrA, N-terminal DNA-binding domain Alide_2719 5a5458210e990ee613d78e823e043383 186 Pfam PF11198 Protein of unknown function (DUF2857) 8 182 2.0E-62 T 12-10-2018 IPR021364 Protein of unknown function DUF2857 Alide_4088 daa638506167d647fbf21cdee29a19f8 151 Pfam PF09980 Predicted membrane protein (DUF2214) 4 149 2.1E-48 T 12-10-2018 IPR018706 Protein of unknown function DUF2214, membrane Alide_2365 3148a68481389f8c5e404d1822dfa432 339 Pfam PF01882 Protein of unknown function DUF58 232 313 2.6E-9 T 12-10-2018 IPR002881 Domain of unknown function DUF58 Alide_0245 dc1f27ba13aaae93e2c636baf099a10b 304 Pfam PF04245 37-kD nucleoid-associated bacterial protein 16 270 6.5E-14 T 12-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 Alide_4534 215a870d83eacb5e65e8a77099bf98e2 171 Pfam PF09676 Type IV conjugative transfer system lipoprotein (TraV) 35 151 1.9E-19 T 12-10-2018 IPR014118 Type IV conjugative transfer system protein TraV Alide_4534 215a870d83eacb5e65e8a77099bf98e2 171 TIGRFAM TIGR02747 TraV: type IV conjugative transfer system protein TraV 12 151 1.7E-15 T 12-10-2018 IPR014118 Type IV conjugative transfer system protein TraV Alide_4451 931cdd6ab5ba81713cbc959423e4bdc2 496 Pfam PF00665 Integrase core domain 117 242 7.6E-11 T 12-10-2018 IPR001584 Integrase, catalytic core GO:0015074 Alide_3645 be200a41df06909b9d881a3f40366d65 162 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 10 154 7.9E-21 T 12-10-2018 IPR009936 Protein of unknown function DUF1468 Alide_0959 823616844457b246c04a88aede0d6b55 207 Pfam PF04367 Protein of unknown function (DUF502) 59 164 2.1E-38 T 12-10-2018 IPR007462 Protein of unknown function DUF502 Alide_0080 356d0f11762a157ec208366b0fa00027 244 Pfam PF13453 Transcription factor zinc-finger 7 48 6.3E-9 T 12-10-2018 IPR027392 Transcription factor zinc-finger Alide_1932 4e81b68c2cfc51055bc7e3761fa5a568 865 Pfam PF03993 Domain of Unknown Function (DUF349) 405 483 1.1E-11 T 12-10-2018 IPR007139 Protein of unknown function DUF349 Alide_4470 92f72e2d15fa8ec07f626dfc42b95749 406 Pfam PF07042 TrfA protein 126 406 1.2E-190 T 12-10-2018 IPR010751 Plasmid replication initiator protein TrfA Alide_0237 c3893dd5d1d4ea6ec262654140c78588 94 SUPERFAMILY SSF47598 47 88 2.89E-8 T 12-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Alide_1503 d64c4fc4183884b3dd6b0d1cdcc3b8b4 774 Pfam PF02538 Hydantoinase B/oxoprolinase 50 629 9.2E-127 T 12-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Alide_1246 6089d125b0c96482166f98a949e3803e 137 Pfam PF04606 Ogr/Delta-like zinc finger 37 80 1.5E-13 T 12-10-2018 IPR007684 Zinc finger, Ogr/Delta-type Alide_2357 a88f72697aae1029650926abace6cd4a 385 Pfam PF01757 Acyltransferase family 10 344 1.8E-18 T 12-10-2018 IPR002656 Acyltransferase 3 GO:0016747 Alide_4094 e2068372d12ef7909acaf54aef99d707 94 Pfam PF14375 Cysteine-rich CWC 18 68 2.0E-15 T 12-10-2018 IPR032720 Cysteine-rich CWC Alide_1745 de0a777a516e81bb560db542d3e9ece6 185 Pfam PF11136 Protein of unknown function (DUF2889) 13 138 3.9E-42 T 12-10-2018 IPR021312 Protein of unknown function DUF2889 Alide_0449 312ff8f0530b83ab296370c0df31b767 178 Pfam PF11161 Protein of unknown function (DUF2946) 1 171 2.6E-60 T 12-10-2018 IPR021332 Protein of unknown function DUF2944 Alide_1441 3a9e71709e2453e10cd650b03ec16bc9 71 Pfam PF14090 Helix-turn-helix domain 10 70 4.3E-14 T 12-10-2018 Alide_2530 48198aadcd8713f9f27405049e1f116d 196 Pfam PF02417 Chromate transporter 22 186 4.9E-29 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Alide_3174 b37d2faeada9791ed7420b109c0f5b63 121 Pfam PF16137 Domain of unknown function (DUF4845) 37 116 3.2E-24 T 12-10-2018 IPR032314 Protein of unknown function DUF4845 Alide_3359 8b262921a03d42cdb751491df71f68f9 313 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 1 289 1.1E-61 T 12-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 Alide_2531 f9350f831ff638917d301dd0128f3121 197 Pfam PF02417 Chromate transporter 13 192 2.7E-30 T 12-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Alide_4034 8a371e7fdb4c1b56a7d8fdb8589d5143 507 Pfam PF07916 TraG-like protein, N-terminal region 10 488 4.5E-96 T 12-10-2018 IPR012931 TraG-like, N-terminal Alide_2299 13787ee2d258fc66c9c2aebdcf6fd8b4 69 Pfam PF11127 Protein of unknown function (DUF2892) 5 61 3.0E-12 T 12-10-2018 IPR021309 Protein of unknown function DUF2892 Alide_1254 5a870f2a83a29a7aad4881c1a9e398ed 76 Pfam PF13711 Domain of unknown function (DUF4160) 12 72 4.1E-16 T 12-10-2018 IPR025427 Protein of unknown function DUF4160 Alide_1988 3c93a3203129ef3380bdd3601e759da6 237 Pfam PF01925 Sulfite exporter TauE/SafE 3 233 2.4E-29 T 12-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 Alide_1809 0e874772ea525b8df16f304860c7a74d 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 294 3.2E-38 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3793 a86906484b92a701d2a9f444687fcea1 86 Pfam PF06945 Protein of unknown function (DUF1289) 30 76 5.1E-18 T 12-10-2018 IPR010710 Protein of unknown function DUF1289 Alide_0859 0ff9b69825232d8c8b10f14355cc0aaf 434 Pfam PF11902 Protein of unknown function (DUF3422) 9 429 4.9E-155 T 12-10-2018 IPR021830 Protein of unknown function DUF3422 Alide_2437 33baed91da70655b1f403609ebf73aa3 295 Pfam PF02653 Branched-chain amino acid transport system / permease component 7 278 2.5E-38 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_2159 36196535171bf3738e1f6164626c7d07 500 Gene3D G3DSA:3.30.70.3460 68 152 4.4E-17 T 12-10-2018 Alide_2159 36196535171bf3738e1f6164626c7d07 500 Gene3D G3DSA:3.30.70.3460 405 481 1.5E-15 T 12-10-2018 Alide_2159 36196535171bf3738e1f6164626c7d07 500 Gene3D G3DSA:3.30.70.3460 187 336 5.1E-34 T 12-10-2018 Alide_0517 0e06cac732eab47b6c44001d8c99a3cb 95 Pfam PF12091 Protein of unknown function (DUF3567) 1 95 1.3E-37 T 12-10-2018 IPR021951 Protein of unknown function DUF3567 Alide_1164 699c8e08ee32d160be9a20ef4772a534 300 SUPERFAMILY SSF103481 42 145 2.75E-16 T 12-10-2018 Alide_1164 699c8e08ee32d160be9a20ef4772a534 300 SUPERFAMILY SSF103481 217 298 1.7E-8 T 12-10-2018 Alide_1164 699c8e08ee32d160be9a20ef4772a534 300 Pfam PF00892 EamA-like transporter family 156 297 9.9E-13 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_1164 699c8e08ee32d160be9a20ef4772a534 300 Pfam PF00892 EamA-like transporter family 10 141 8.2E-22 T 12-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Alide_4633 8d5c7448c23f3372ca7c779c1a0fefc7 581 Pfam PF13700 Domain of unknown function (DUF4158) 13 169 3.4E-24 T 12-10-2018 IPR025296 Domain of unknown function DUF4158 Alide_4087 50f416ca83bc4c80517c28b363823808 108 Pfam PF07769 psiF repeat 72 104 9.6E-19 T 12-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat Alide_4087 50f416ca83bc4c80517c28b363823808 108 Pfam PF07769 psiF repeat 36 67 6.5E-17 T 12-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat Alide_1352 4fb9a684f73cb2035e4bf5466f99f8d6 879 Pfam PF02687 FtsX-like permease family 307 404 4.2E-7 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Alide_1352 4fb9a684f73cb2035e4bf5466f99f8d6 879 Pfam PF02687 FtsX-like permease family 776 866 1.8E-11 T 12-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Alide_2921 bdff59b12693b0deac5c751fc0a0e8ba 297 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 259 5.0E-31 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_3541 8dd3c4ae868281839c46a4b1ce606107 542 Gene3D G3DSA:2.60.40.1120 485 542 2.3E-5 T 12-10-2018 Alide_3851 500a82d6d49b5c2fea123dd01dcc84f4 191 Pfam PF03748 Flagellar basal body-associated protein FliL 63 191 1.6E-27 T 12-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 Alide_0230 b9db4bc82fc5ef8f13756ac085ba20f9 96 Pfam PF12773 Double zinc ribbon 48 92 2.1E-12 T 12-10-2018 IPR025874 Double zinc ribbon Alide_2216 7a16b28df55dc169865b60fe8dca1ceb 102 Pfam PF05957 Bacterial protein of unknown function (DUF883) 11 102 1.3E-23 T 12-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 Alide_3567 7062b1e2b166fde7d908985e5d1fc800 138 Gene3D G3DSA:1.10.260.40 1 70 1.7E-7 T 12-10-2018 Alide_3131 dd1c1e17baafe10853b9e97937c99cb3 307 Pfam PF01136 Peptidase family U32 102 257 2.9E-14 T 12-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Alide_1364 6dde2812bb6fcf275dc10a1e8266ebff 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 279 1.2E-35 T 12-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Alide_2063 16071266b86a86ee21c4292da8d16754 99 TIGRFAM TIGR04111 BcepMu_gp16: phage-associated protein, BcepMu gp16 family 23 82 3.5E-24 T 12-10-2018 IPR026365 Phage-associated protein, BcepMu gp16 family Alide_4388 528cbb71f85f46d6a7486fe25c09b0e0 338 Pfam PF10546 P63C domain 199 290 2.9E-32 T 12-10-2018 IPR018874 Bacteriophage Mx8, p63, C-terminal