locus-tag class description Alide2_0001 PF11638 DnaA N-terminal domain Alide2_0001 PF08299 Bacterial dnaA protein helix-turn-helix Alide2_0001 PF00308 Bacterial dnaA protein Alide2_0002 PF02767 DNA polymerase III beta subunit, central domain Alide2_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Alide2_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Alide2_0003 PF00986 DNA gyrase B subunit, carboxyl terminus Alide2_0003 PF01751 Toprim domain Alide2_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0003 PF18053 DNA gyrase B subunit insert domain Alide2_0003 PF00204 DNA gyrase B Alide2_0006 PF00665 Integrase core domain Alide2_0006 PF13276 HTH-like domain Alide2_0006 PF13333 Integrase core domain Alide2_0007 PF01527 Transposase Alide2_0010 PF02515 CoA-transferase family III Alide2_0011 PF00378 Enoyl-CoA hydratase/isomerase Alide2_0012 PF03466 LysR substrate binding domain Alide2_0012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0013 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_0015 PF00289 Biotin carboxylase, N-terminal domain Alide2_0015 PF02785 Biotin carboxylase C-terminal domain Alide2_0016 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0016 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0016 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0017 PF01039 Carboxyl transferase domain Alide2_0018 PF00708 Acylphosphatase Alide2_0020 PF00742 Homoserine dehydrogenase Alide2_0020 PF03447 Homoserine dehydrogenase, NAD binding domain Alide2_0020 PF01842 ACT domain Alide2_0021 PF06733 DEAD_2 Alide2_0021 PF13307 Helicase C-terminal domain Alide2_0023 PF00877 NlpC/P60 family Alide2_0024 PF00793 DAHP synthetase I family Alide2_0025 PF03707 Bacterial signalling protein N terminal repeat Alide2_0025 PF00990 Diguanylate cyclase, GGDEF domain Alide2_0025 PF00563 EAL domain Alide2_0027 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0028 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0028 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0028 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0029 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0029 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0029 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0030 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0031 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide2_0031 PF13380 CoA binding domain Alide2_0031 PF00583 Acetyltransferase (GNAT) family Alide2_0032 PF00378 Enoyl-CoA hydratase/isomerase Alide2_0036 PF04381 Putative exonuclease, RdgC Alide2_0037 PF07670 Nucleoside recognition Alide2_0040 PF09278 MerR, DNA binding Alide2_0040 PF00376 MerR family regulatory protein Alide2_0042 PF00403 Heavy-metal-associated domain Alide2_0043 PF00672 HAMP domain Alide2_0043 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_0043 PF02203 Tar ligand binding domain homologue Alide2_0044 PF00873 AcrB/AcrD/AcrF family Alide2_0045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_0045 PF00529 HlyD membrane-fusion protein of T1SS Alide2_0047 PF00072 Response regulator receiver domain Alide2_0047 PF00486 Transcriptional regulatory protein, C terminal Alide2_0048 PF00512 His Kinase A (phospho-acceptor) domain Alide2_0048 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0049 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alide2_0050 PF02798 Glutathione S-transferase, N-terminal domain Alide2_0050 PF00043 Glutathione S-transferase, C-terminal domain Alide2_0051 PF03692 Putative zinc- or iron-chelating domain Alide2_0052 PF03358 NADPH-dependent FMN reductase Alide2_0053 PF01134 Glucose inhibited division protein A Alide2_0053 PF13932 GidA associated domain Alide2_0055 PF02527 rRNA small subunit methyltransferase G Alide2_0056 PF01810 LysE type translocator Alide2_0057 PF13614 AAA domain Alide2_0059 PF17762 HTH domain found in ParB protein Alide2_0059 PF02195 ParB-like nuclease domain Alide2_0064 PF05552 Conserved TM helix Alide2_0064 PF00924 Mechanosensitive ion channel Alide2_0066 PF01565 FAD binding domain Alide2_0066 PF02913 FAD linked oxidases, C-terminal domain Alide2_0068 PF01923 Cobalamin adenosyltransferase Alide2_0069 PF03061 Thioesterase superfamily Alide2_0070 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Alide2_0070 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Alide2_0072 PF03466 LysR substrate binding domain Alide2_0072 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0073 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0075 PF00106 short chain dehydrogenase Alide2_0077 PF00860 Permease family Alide2_0079 PF01494 FAD binding domain Alide2_0080 PF00501 AMP-binding enzyme Alide2_0080 PF13193 AMP-binding enzyme C-terminal domain Alide2_0081 PF03466 LysR substrate binding domain Alide2_0081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0082 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0083 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0083 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0083 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0084 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0084 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0084 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0085 PF00378 Enoyl-CoA hydratase/isomerase Alide2_0086 PF01066 CDP-alcohol phosphatidyltransferase Alide2_0090 PF03775 Septum formation inhibitor MinC, C-terminal domain Alide2_0090 PF05209 Septum formation inhibitor MinC, N-terminal domain Alide2_0091 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide2_0092 PF03776 Septum formation topological specificity factor MinE Alide2_0093 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0093 PF03466 LysR substrate binding domain Alide2_0094 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0095 PF13378 Enolase C-terminal domain-like Alide2_0095 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Alide2_0096 PF01613 Flavin reductase like domain Alide2_0097 PF00561 alpha/beta hydrolase fold Alide2_0101 PF03466 LysR substrate binding domain Alide2_0101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0103 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Alide2_0103 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Alide2_0105 PF13291 ACT domain Alide2_0105 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_0106 PF18158 Adaptive response protein AidB N-terminal domain Alide2_0106 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0106 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0107 PF00690 Cation transporter/ATPase, N-terminus Alide2_0107 PF00689 Cation transporting ATPase, C-terminus Alide2_0108 PF02965 Vitamin B12 dependent methionine synthase, activation domain Alide2_0108 PF02574 Homocysteine S-methyltransferase Alide2_0108 PF00809 Pterin binding enzyme Alide2_0108 PF02607 B12 binding domain Alide2_0108 PF02310 B12 binding domain Alide2_0109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0109 PF03466 LysR substrate binding domain Alide2_0110 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0112 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0113 PF00270 DEAD/DEAH box helicase Alide2_0113 PF00570 HRDC domain Alide2_0113 PF09382 RQC domain Alide2_0113 PF16124 RecQ zinc-binding Alide2_0113 PF00271 Helicase conserved C-terminal domain Alide2_0117 PF00563 EAL domain Alide2_0117 PF00990 Diguanylate cyclase, GGDEF domain Alide2_0117 PF03707 Bacterial signalling protein N terminal repeat Alide2_0119 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide2_0120 PF00158 Sigma-54 interaction domain Alide2_0120 PF02954 Bacterial regulatory protein, Fis family Alide2_0122 PF03315 Serine dehydratase beta chain Alide2_0122 PF03313 Serine dehydratase alpha chain Alide2_0123 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0124 PF00501 AMP-binding enzyme Alide2_0124 PF13193 AMP-binding enzyme C-terminal domain Alide2_0125 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0127 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0128 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0130 PF13193 AMP-binding enzyme C-terminal domain Alide2_0130 PF00501 AMP-binding enzyme Alide2_0132 PF00106 short chain dehydrogenase Alide2_0133 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0136 PF09339 IclR helix-turn-helix domain Alide2_0139 PF00108 Thiolase, N-terminal domain Alide2_0139 PF02803 Thiolase, C-terminal domain Alide2_0140 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0141 PF13193 AMP-binding enzyme C-terminal domain Alide2_0141 PF00501 AMP-binding enzyme Alide2_0143 PF00106 short chain dehydrogenase Alide2_0144 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0148 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0150 PF02515 CoA-transferase family III Alide2_0151 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0151 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0151 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0153 PF00106 short chain dehydrogenase Alide2_0154 PF13452 N-terminal half of MaoC dehydratase Alide2_0155 PF00378 Enoyl-CoA hydratase/isomerase Alide2_0156 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Alide2_0156 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Alide2_0157 PF00108 Thiolase, N-terminal domain Alide2_0157 PF02803 Thiolase, C-terminal domain Alide2_0159 PF02515 CoA-transferase family III Alide2_0161 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0162 PF03466 LysR substrate binding domain Alide2_0162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0163 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0164 PF01546 Peptidase family M20/M25/M40 Alide2_0164 PF07687 Peptidase dimerisation domain Alide2_0165 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0166 PF13193 AMP-binding enzyme C-terminal domain Alide2_0166 PF00501 AMP-binding enzyme Alide2_0167 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0168 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0169 PF01546 Peptidase family M20/M25/M40 Alide2_0169 PF07687 Peptidase dimerisation domain Alide2_0172 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0172 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0172 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0175 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0177 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0177 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0177 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0178 PF01039 Carboxyl transferase domain Alide2_0179 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0179 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0179 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0180 PF00378 Enoyl-CoA hydratase/isomerase Alide2_0181 PF02785 Biotin carboxylase C-terminal domain Alide2_0181 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_0181 PF00289 Biotin carboxylase, N-terminal domain Alide2_0181 PF00364 Biotin-requiring enzyme Alide2_0183 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0184 PF02515 CoA-transferase family III Alide2_0186 PF02515 CoA-transferase family III Alide2_0187 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0187 PF03466 LysR substrate binding domain Alide2_0188 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0189 PF02515 CoA-transferase family III Alide2_0190 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Alide2_0190 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide2_0192 PF06977 SdiA-regulated Alide2_0193 PF02607 B12 binding domain Alide2_0193 PF00809 Pterin binding enzyme Alide2_0193 PF02310 B12 binding domain Alide2_0193 PF02574 Homocysteine S-methyltransferase Alide2_0193 PF02965 Vitamin B12 dependent methionine synthase, activation domain Alide2_0194 PF18470 Cas9 alpha-helical lobe domain Alide2_0194 PF18541 RuvC endonuclease subdomain 3 Alide2_0194 PF13395 HNH endonuclease Alide2_0196 PF09827 CRISPR associated protein Cas2 Alide2_0198 PF03050 Transposase IS66 family Alide2_0198 PF13007 Transposase C of IS166 homeodomain Alide2_0198 PF13817 IS66 C-terminal element Alide2_0198 PF13005 zinc-finger binding domain of transposase IS66 Alide2_0202 PF01695 IstB-like ATP binding protein Alide2_0204 PF01202 Shikimate kinase Alide2_0207 PF00175 Oxidoreductase NAD-binding domain Alide2_0207 PF00970 Oxidoreductase FAD-binding domain Alide2_0208 PF13458 Periplasmic binding protein Alide2_0209 PF02653 Branched-chain amino acid transport system / permease component Alide2_0210 PF00005 ABC transporter Alide2_0214 PF13335 Magnesium chelatase, subunit ChlI C-terminal Alide2_0214 PF01078 Magnesium chelatase, subunit ChlI Alide2_0216 PF00543 Nitrogen regulatory protein P-II Alide2_0217 PF00909 Ammonium Transporter Family Alide2_0218 PF01527 Transposase Alide2_0221 PF01695 IstB-like ATP binding protein Alide2_0224 PF12697 Alpha/beta hydrolase family Alide2_0226 PF05145 Transition state regulatory protein AbrB Alide2_0228 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0228 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0228 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0229 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0230 PF00583 Acetyltransferase (GNAT) family Alide2_0230 PF13380 CoA binding domain Alide2_0230 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide2_0231 PF01565 FAD binding domain Alide2_0233 PF13183 4Fe-4S dicluster domain Alide2_0233 PF02754 Cysteine-rich domain Alide2_0236 PF07690 Major Facilitator Superfamily Alide2_0237 PF00842 Alanine racemase, C-terminal domain Alide2_0237 PF01168 Alanine racemase, N-terminal domain Alide2_0238 PF00034 Cytochrome c Alide2_0238 PF03150 Di-haem cytochrome c peroxidase Alide2_0239 PF14497 Glutathione S-transferase, C-terminal domain Alide2_0239 PF02798 Glutathione S-transferase, N-terminal domain Alide2_0240 PF18073 Rubredoxin metal binding domain Alide2_0242 PF01425 Amidase Alide2_0244 PF01063 Amino-transferase class IV Alide2_0248 PF00535 Glycosyl transferase family 2 Alide2_0250 PF03060 Nitronate monooxygenase Alide2_0251 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0251 PF03466 LysR substrate binding domain Alide2_0252 PF06779 Uncharacterised MFS-type transporter YbfB Alide2_0253 PF03475 3-alpha domain Alide2_0253 PF03473 MOSC domain Alide2_0257 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0258 PF03466 LysR substrate binding domain Alide2_0258 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0259 PF02515 CoA-transferase family III Alide2_0260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0260 PF00672 HAMP domain Alide2_0260 PF00512 His Kinase A (phospho-acceptor) domain Alide2_0261 PF00072 Response regulator receiver domain Alide2_0261 PF00486 Transcriptional regulatory protein, C terminal Alide2_0262 PF07690 Major Facilitator Superfamily Alide2_0265 PF01435 Peptidase family M48 Alide2_0269 PF02954 Bacterial regulatory protein, Fis family Alide2_0269 PF00158 Sigma-54 interaction domain Alide2_0269 PF06505 Activator of aromatic catabolism Alide2_0269 PF02830 V4R domain Alide2_0270 PF06099 Phenol hydroxylase subunit Alide2_0271 PF02332 Methane/Phenol/Toluene Hydroxylase Alide2_0272 PF02406 MmoB/DmpM family Alide2_0273 PF02332 Methane/Phenol/Toluene Hydroxylase Alide2_0273 PF04945 YHS domain Alide2_0274 PF01494 FAD binding domain Alide2_0275 PF00970 Oxidoreductase FAD-binding domain Alide2_0275 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_0275 PF00175 Oxidoreductase NAD-binding domain Alide2_0276 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_0277 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide2_0278 PF03928 Haem-degrading Alide2_0280 PF00171 Aldehyde dehydrogenase family Alide2_0281 PF00561 alpha/beta hydrolase fold Alide2_0283 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation Alide2_0283 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alide2_0284 PF07836 DmpG-like communication domain Alide2_0284 PF00682 HMGL-like Alide2_0286 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0287 PF01361 Tautomerase enzyme Alide2_0288 PF00753 Metallo-beta-lactamase superfamily Alide2_0289 PF01614 Bacterial transcriptional regulator Alide2_0289 PF09339 IclR helix-turn-helix domain Alide2_0290 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0291 PF04909 Amidohydrolase Alide2_0292 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0293 PF03737 Aldolase/RraA Alide2_0294 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide2_0294 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_0295 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0296 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0297 PF04909 Amidohydrolase Alide2_0298 PF08450 SMP-30/Gluconolactonase/LRE-like region Alide2_0299 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide2_0300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide2_0301 PF00171 Aldehyde dehydrogenase family Alide2_0302 PF09339 IclR helix-turn-helix domain Alide2_0302 PF01614 Bacterial transcriptional regulator Alide2_0306 PF02653 Branched-chain amino acid transport system / permease component Alide2_0308 PF00005 ABC transporter Alide2_0308 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_0309 PF00005 ABC transporter Alide2_0311 PF00392 Bacterial regulatory proteins, gntR family Alide2_0311 PF07729 FCD domain Alide2_0312 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0312 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0312 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0314 PF01636 Phosphotransferase enzyme family Alide2_0315 PF03372 Endonuclease/Exonuclease/phosphatase family Alide2_0316 PF00156 Phosphoribosyl transferase domain Alide2_0318 PF02637 GatB domain Alide2_0318 PF02934 GatB/GatE catalytic domain Alide2_0319 PF01425 Amidase Alide2_0320 PF02686 Glu-tRNAGln amidotransferase C subunit Alide2_0323 PF04093 rod shape-determining protein MreD Alide2_0324 PF00905 Penicillin binding protein transpeptidase domain Alide2_0324 PF03717 Penicillin-binding Protein dimerisation domain Alide2_0325 PF00491 Arginase family Alide2_0326 PF01925 Sulfite exporter TauE/SafE Alide2_0327 PF05199 GMC oxidoreductase Alide2_0327 PF00732 GMC oxidoreductase Alide2_0328 PF02405 Permease MlaE Alide2_0329 PF00005 ABC transporter Alide2_0330 PF02470 MlaD protein Alide2_0333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0333 PF03466 LysR substrate binding domain Alide2_0334 PF00330 Aconitase family (aconitate hydratase) Alide2_0335 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0336 PF03737 Aldolase/RraA Alide2_0337 PF01914 MarC family integral membrane protein Alide2_0338 PF01738 Dienelactone hydrolase family Alide2_0339 PF07690 Major Facilitator Superfamily Alide2_0340 PF13533 Biotin-lipoyl like Alide2_0341 PF02321 Outer membrane efflux protein Alide2_0343 PF01544 CorA-like Mg2+ transporter protein Alide2_0344 PF00490 Delta-aminolevulinic acid dehydratase Alide2_0349 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Alide2_0350 PF07943 Penicillin-binding protein 5, C-terminal domain Alide2_0350 PF00768 D-alanyl-D-alanine carboxypeptidase Alide2_0351 PF00164 Ribosomal protein S12/S23 Alide2_0352 PF00177 Ribosomal protein S7p/S5e Alide2_0353 PF03764 Elongation factor G, domain IV Alide2_0353 PF14492 Elongation Factor G, domain II Alide2_0353 PF03144 Elongation factor Tu domain 2 Alide2_0353 PF00009 Elongation factor Tu GTP binding domain Alide2_0353 PF00679 Elongation factor G C-terminus Alide2_0354 PF00009 Elongation factor Tu GTP binding domain Alide2_0354 PF03144 Elongation factor Tu domain 2 Alide2_0354 PF03143 Elongation factor Tu C-terminal domain Alide2_0355 PF00338 Ribosomal protein S10p/S20e Alide2_0356 PF00297 Ribosomal protein L3 Alide2_0357 PF00573 Ribosomal protein L4/L1 family Alide2_0358 PF00276 Ribosomal protein L23 Alide2_0359 PF00181 Ribosomal Proteins L2, RNA binding domain Alide2_0359 PF03947 Ribosomal Proteins L2, C-terminal domain Alide2_0360 PF00203 Ribosomal protein S19 Alide2_0361 PF00237 Ribosomal protein L22p/L17e Alide2_0362 PF00189 Ribosomal protein S3, C-terminal domain Alide2_0362 PF07650 KH domain Alide2_0363 PF00252 Ribosomal protein L16p/L10e Alide2_0364 PF00831 Ribosomal L29 protein Alide2_0365 PF00366 Ribosomal protein S17 Alide2_0366 PF00462 Glutaredoxin Alide2_0366 PF08534 Redoxin Alide2_0369 PF00578 AhpC/TSA family Alide2_0372 PF00381 PTS HPr component phosphorylation site Alide2_0373 PF00391 PEP-utilising enzyme, mobile domain Alide2_0373 PF02896 PEP-utilising enzyme, TIM barrel domain Alide2_0373 PF05524 PEP-utilising enzyme, N-terminal Alide2_0374 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Alide2_0374 PF04055 Radical SAM superfamily Alide2_0375 PF03099 Biotin/lipoate A/B protein ligase family Alide2_0376 PF04359 Protein of unknown function (DUF493) Alide2_0378 PF00119 ATP synthase A chain Alide2_0379 PF00137 ATP synthase subunit C Alide2_0380 PF00430 ATP synthase B/B' CF(0) Alide2_0381 PF00213 ATP synthase delta (OSCP) subunit Alide2_0382 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide2_0382 PF00306 ATP synthase alpha/beta chain, C terminal domain Alide2_0382 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alide2_0383 PF00231 ATP synthase Alide2_0384 PF02874 ATP synthase alpha/beta family, beta-barrel domain Alide2_0384 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide2_0385 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Alide2_0388 PF13005 zinc-finger binding domain of transposase IS66 Alide2_0388 PF03050 Transposase IS66 family Alide2_0388 PF13817 IS66 C-terminal element Alide2_0388 PF13007 Transposase C of IS166 homeodomain Alide2_0397 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_0398 PF02321 Outer membrane efflux protein Alide2_0399 PF00873 AcrB/AcrD/AcrF family Alide2_0400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_0400 PF00529 HlyD membrane-fusion protein of T1SS Alide2_0401 PF08361 MAATS-type transcriptional repressor, C-terminal region Alide2_0401 PF00440 Bacterial regulatory proteins, tetR family Alide2_0402 PF03144 Elongation factor Tu domain 2 Alide2_0402 PF00009 Elongation factor Tu GTP binding domain Alide2_0402 PF03143 Elongation factor Tu C-terminal domain Alide2_0403 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Alide2_0404 PF00467 KOW motif Alide2_0404 PF02357 Transcription termination factor nusG Alide2_0405 PF00298 Ribosomal protein L11, RNA binding domain Alide2_0405 PF03946 Ribosomal protein L11, N-terminal domain Alide2_0406 PF00687 Ribosomal protein L1p/L10e family Alide2_0407 PF00466 Ribosomal protein L10 Alide2_0408 PF16320 Ribosomal protein L7/L12 dimerisation domain Alide2_0408 PF00542 Ribosomal protein L7/L12 C-terminal domain Alide2_0409 PF04560 RNA polymerase Rpb2, domain 7 Alide2_0409 PF10385 RNA polymerase beta subunit external 1 domain Alide2_0409 PF04565 RNA polymerase Rpb2, domain 3 Alide2_0409 PF00562 RNA polymerase Rpb2, domain 6 Alide2_0409 PF04563 RNA polymerase beta subunit Alide2_0409 PF04561 RNA polymerase Rpb2, domain 2 Alide2_0410 PF04997 RNA polymerase Rpb1, domain 1 Alide2_0410 PF00623 RNA polymerase Rpb1, domain 2 Alide2_0410 PF04983 RNA polymerase Rpb1, domain 3 Alide2_0410 PF04998 RNA polymerase Rpb1, domain 5 Alide2_0410 PF05000 RNA polymerase Rpb1, domain 4 Alide2_0412 PF01029 NusB family Alide2_0412 PF01189 16S rRNA methyltransferase RsmB/F Alide2_0414 PF00672 HAMP domain Alide2_0414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0414 PF00512 His Kinase A (phospho-acceptor) domain Alide2_0414 PF00989 PAS fold Alide2_0415 PF02954 Bacterial regulatory protein, Fis family Alide2_0415 PF00158 Sigma-54 interaction domain Alide2_0415 PF00072 Response regulator receiver domain Alide2_0417 PF13683 Integrase core domain Alide2_0417 PF13276 HTH-like domain Alide2_0418 PF01527 Transposase Alide2_0433 PF13356 Arm DNA-binding domain Alide2_0433 PF00589 Phage integrase family Alide2_0439 PF01370 NAD dependent epimerase/dehydratase family Alide2_0440 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Alide2_0441 PF00535 Glycosyl transferase family 2 Alide2_0443 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide2_0444 PF02021 Uncharacterised protein family UPF0102 Alide2_0445 PF13580 SIS domain Alide2_0447 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide2_0447 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide2_0448 PF00437 Type II/IV secretion system protein Alide2_0449 PF13545 Crp-like helix-turn-helix domain Alide2_0449 PF00027 Cyclic nucleotide-binding domain Alide2_0450 PF00437 Type II/IV secretion system protein Alide2_0451 PF01168 Alanine racemase, N-terminal domain Alide2_0454 PF04286 Protein of unknown function (DUF445) Alide2_0455 PF01565 FAD binding domain Alide2_0455 PF02913 FAD linked oxidases, C-terminal domain Alide2_0456 PF03466 LysR substrate binding domain Alide2_0456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0457 PF00551 Formyl transferase Alide2_0458 PF08448 PAS fold Alide2_0458 PF00990 Diguanylate cyclase, GGDEF domain Alide2_0458 PF00563 EAL domain Alide2_0458 PF08447 PAS fold Alide2_0460 PF02867 Ribonucleotide reductase, barrel domain Alide2_0460 PF00317 Ribonucleotide reductase, all-alpha domain Alide2_0460 PF03477 ATP cone domain Alide2_0461 PF07730 Histidine kinase Alide2_0462 PF00196 Bacterial regulatory proteins, luxR family Alide2_0462 PF00072 Response regulator receiver domain Alide2_0463 PF07690 Major Facilitator Superfamily Alide2_0464 PF07690 Major Facilitator Superfamily Alide2_0465 PF01568 Molydopterin dinucleotide binding domain Alide2_0465 PF00384 Molybdopterin oxidoreductase Alide2_0465 PF14710 Respiratory nitrate reductase alpha N-terminal Alide2_0466 PF13247 4Fe-4S dicluster domain Alide2_0466 PF14711 Respiratory nitrate reductase beta C-terminal Alide2_0467 PF02613 Nitrate reductase delta subunit Alide2_0468 PF02665 Nitrate reductase gamma subunit Alide2_0470 PF00484 Carbonic anhydrase Alide2_0473 PF01814 Hemerythrin HHE cation binding domain Alide2_0478 PF01568 Molydopterin dinucleotide binding domain Alide2_0478 PF00384 Molybdopterin oxidoreductase Alide2_0478 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide2_0480 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide2_0481 PF02515 CoA-transferase family III Alide2_0482 PF01575 MaoC like domain Alide2_0483 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0483 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0483 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0484 PF01575 MaoC like domain Alide2_0486 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide2_0488 PF07687 Peptidase dimerisation domain Alide2_0488 PF01546 Peptidase family M20/M25/M40 Alide2_0491 PF03352 Methyladenine glycosylase Alide2_0495 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0496 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0497 PF14535 AMP-binding enzyme C-terminal domain Alide2_0497 PF00501 AMP-binding enzyme Alide2_0498 PF00005 ABC transporter Alide2_0501 PF02653 Branched-chain amino acid transport system / permease component Alide2_0502 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_0502 PF00005 ABC transporter Alide2_0503 PF00501 AMP-binding enzyme Alide2_0504 PF13401 AAA domain Alide2_0504 PF01471 Putative peptidoglycan binding domain Alide2_0506 PF13545 Crp-like helix-turn-helix domain Alide2_0506 PF00027 Cyclic nucleotide-binding domain Alide2_0507 PF00849 RNA pseudouridylate synthase Alide2_0507 PF01479 S4 domain Alide2_0508 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0508 PF00183 Hsp90 protein Alide2_0510 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0511 PF01636 Phosphotransferase enzyme family Alide2_0512 PF00069 Protein kinase domain Alide2_0512 PF03793 PASTA domain Alide2_0514 PF02515 CoA-transferase family III Alide2_0517 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide2_0518 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide2_0519 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide2_0520 PF04909 Amidohydrolase Alide2_0521 PF01042 Endoribonuclease L-PSP Alide2_0522 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0523 PF01613 Flavin reductase like domain Alide2_0525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide2_0525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide2_0526 PF05199 GMC oxidoreductase Alide2_0526 PF00732 GMC oxidoreductase Alide2_0529 PF01061 ABC-2 type transporter Alide2_0530 PF00005 ABC transporter Alide2_0531 PF07519 Tannase and feruloyl esterase Alide2_0532 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Alide2_0532 PF01048 Phosphorylase superfamily Alide2_0533 PF03707 Bacterial signalling protein N terminal repeat Alide2_0533 PF13188 PAS domain Alide2_0533 PF00990 Diguanylate cyclase, GGDEF domain Alide2_0533 PF00563 EAL domain Alide2_0534 PF16916 Dimerisation domain of Zinc Transporter Alide2_0534 PF01545 Cation efflux family Alide2_0535 PF02580 D-Tyr-tRNA(Tyr) deacylase Alide2_0536 PF01925 Sulfite exporter TauE/SafE Alide2_0537 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0537 PF03466 LysR substrate binding domain Alide2_0538 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0539 PF02515 CoA-transferase family III Alide2_0540 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_0540 PF00107 Zinc-binding dehydrogenase Alide2_0541 PF00501 AMP-binding enzyme Alide2_0541 PF13193 AMP-binding enzyme C-terminal domain Alide2_0542 PF02130 Uncharacterized protein family UPF0054 Alide2_0543 PF02562 PhoH-like protein Alide2_0544 PF01330 RuvA N terminal domain Alide2_0544 PF07499 RuvA, C-terminal domain Alide2_0546 PF00012 Hsp70 protein Alide2_0547 PF00012 Hsp70 protein Alide2_0549 PF05491 RuvB C-terminal winged helix domain Alide2_0549 PF17864 RuvB AAA lid domain Alide2_0549 PF05496 Holliday junction DNA helicase RuvB P-loop domain Alide2_0550 PF02308 MgtC family Alide2_0553 PF14031 Putative serine dehydratase domain Alide2_0553 PF01168 Alanine racemase, N-terminal domain Alide2_0554 PF00300 Histidine phosphatase superfamily (branch 1) Alide2_0556 PF01171 PP-loop family Alide2_0563 PF00480 ROK family Alide2_0564 PF00982 Glycosyltransferase family 20 Alide2_0565 PF00723 Glycosyl hydrolases family 15 Alide2_0566 PF02358 Trehalose-phosphatase Alide2_0567 PF00085 Thioredoxin Alide2_0568 PF12627 Probable RNA and SrmB- binding site of polymerase A Alide2_0568 PF01966 HD domain Alide2_0568 PF01743 Poly A polymerase head domain Alide2_0569 PF00158 Sigma-54 interaction domain Alide2_0569 PF02954 Bacterial regulatory protein, Fis family Alide2_0569 PF01590 GAF domain Alide2_0572 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0575 PF01812 5-formyltetrahydrofolate cyclo-ligase family Alide2_0576 PF01464 Transglycosylase SLT domain Alide2_0576 PF01551 Peptidase family M23 Alide2_0576 PF10145 Phage-related minor tail protein Alide2_0579 PF18331 PKHD-type hydroxylase C-terminal domain Alide2_0579 PF13640 2OG-Fe(II) oxygenase superfamily Alide2_0580 PF01070 FMN-dependent dehydrogenase Alide2_0581 PF07715 TonB-dependent Receptor Plug Domain Alide2_0581 PF00593 TonB dependent receptor Alide2_0583 PF13193 AMP-binding enzyme C-terminal domain Alide2_0583 PF00501 AMP-binding enzyme Alide2_0585 PF02801 Beta-ketoacyl synthase, C-terminal domain Alide2_0585 PF00109 Beta-ketoacyl synthase, N-terminal domain Alide2_0586 PF07977 FabA-like domain Alide2_0587 PF00795 Carbon-nitrogen hydrolase Alide2_0588 PF00571 CBS domain Alide2_0588 PF03471 Transporter associated domain Alide2_0590 PF01037 Lrp/AsnC ligand binding domain Alide2_0591 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide2_0592 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Alide2_0593 PF00676 Dehydrogenase E1 component Alide2_0593 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal Alide2_0594 PF02779 Transketolase, pyrimidine binding domain Alide2_0594 PF02780 Transketolase, C-terminal domain Alide2_0595 PF02817 e3 binding domain Alide2_0595 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide2_0595 PF00364 Biotin-requiring enzyme Alide2_0596 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide2_0596 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_0597 PF02091 Glycyl-tRNA synthetase alpha subunit Alide2_0598 PF02092 Glycyl-tRNA synthetase beta subunit Alide2_0598 PF05746 DALR anticodon binding domain Alide2_0600 PF01553 Acyltransferase Alide2_0603 PF01476 LysM domain Alide2_0603 PF04972 BON domain Alide2_0604 PF03309 Type III pantothenate kinase Alide2_0605 PF00440 Bacterial regulatory proteins, tetR family Alide2_0605 PF08361 MAATS-type transcriptional repressor, C-terminal region Alide2_0607 PF16363 GDP-mannose 4,6 dehydratase Alide2_0608 PF04321 RmlD substrate binding domain Alide2_0609 PF00483 Nucleotidyl transferase Alide2_0610 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Alide2_0612 PF00535 Glycosyl transferase family 2 Alide2_0613 PF00437 Type II/IV secretion system protein Alide2_0613 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alide2_0614 PF00482 Type II secretion system (T2SS), protein F Alide2_0616 PF07963 Prokaryotic N-terminal methylation motif Alide2_0616 PF00114 Pilin (bacterial filament) Alide2_0618 PF07963 Prokaryotic N-terminal methylation motif Alide2_0618 PF11612 Type II secretion system (T2SS), protein J Alide2_0619 PF03934 Type II secretion system (T2SS), protein K Alide2_0626 PF01061 ABC-2 type transporter Alide2_0627 PF14524 Wzt C-terminal domain Alide2_0627 PF00005 ABC transporter Alide2_0629 PF00398 Ribosomal RNA adenine dimethylase Alide2_0630 PF01464 Transglycosylase SLT domain Alide2_0630 PF01551 Peptidase family M23 Alide2_0630 PF10145 Phage-related minor tail protein Alide2_0632 PF00696 Amino acid kinase family Alide2_0635 PF12806 Acetyl-CoA dehydrogenase C-terminal like Alide2_0635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_0635 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_0635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_0637 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide2_0637 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide2_0637 PF00378 Enoyl-CoA hydratase/isomerase Alide2_0638 PF00108 Thiolase, N-terminal domain Alide2_0638 PF02803 Thiolase, C-terminal domain Alide2_0640 PF00378 Enoyl-CoA hydratase/isomerase Alide2_0642 PF03061 Thioesterase superfamily Alide2_0643 PF00664 ABC transporter transmembrane region Alide2_0643 PF00005 ABC transporter Alide2_0645 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide2_0646 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide2_0647 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Alide2_0648 PF03466 LysR substrate binding domain Alide2_0648 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0649 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide2_0650 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_0651 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_0652 PF00005 ABC transporter Alide2_0653 PF02423 Ornithine cyclodeaminase/mu-crystallin family Alide2_0655 PF03144 Elongation factor Tu domain 2 Alide2_0655 PF16658 Class II release factor RF3, C-terminal domain Alide2_0655 PF00009 Elongation factor Tu GTP binding domain Alide2_0657 PF05221 S-adenosyl-L-homocysteine hydrolase Alide2_0657 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Alide2_0658 PF01728 FtsJ-like methyltransferase Alide2_0658 PF01479 S4 domain Alide2_0659 PF02219 Methylenetetrahydrofolate reductase Alide2_0660 PF03330 Lytic transglycolase Alide2_0661 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Alide2_0662 PF00069 Protein kinase domain Alide2_0662 PF08308 PEGA domain Alide2_0663 PF00572 Ribosomal protein L13 Alide2_0664 PF00380 Ribosomal protein S9/S16 Alide2_0665 PF01521 Iron-sulphur cluster biosynthesis Alide2_0666 PF03702 Anhydro-N-acetylmuramic acid kinase Alide2_0667 PF04225 Opacity-associated protein A LysM-like domain Alide2_0667 PF01551 Peptidase family M23 Alide2_0669 PF03466 LysR substrate binding domain Alide2_0669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0670 PF00132 Bacterial transferase hexapeptide (six repeats) Alide2_0670 PF12804 MobA-like NTP transferase domain Alide2_0671 PF13492 GAF domain Alide2_0671 PF00512 His Kinase A (phospho-acceptor) domain Alide2_0671 PF13493 Domain of unknown function (DUF4118) Alide2_0671 PF02702 Osmosensitive K+ channel His kinase sensor domain Alide2_0671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0673 PF01556 DnaJ C terminal domain Alide2_0673 PF00226 DnaJ domain Alide2_0674 PF01037 Lrp/AsnC ligand binding domain Alide2_0675 PF01380 SIS domain Alide2_0676 PF01695 IstB-like ATP binding protein Alide2_0677 PF00665 Integrase core domain Alide2_0682 PF00174 Oxidoreductase molybdopterin binding domain Alide2_0683 PF01292 Prokaryotic cytochrome b561 Alide2_0684 PF00072 Response regulator receiver domain Alide2_0684 PF00486 Transcriptional regulatory protein, C terminal Alide2_0685 PF00512 His Kinase A (phospho-acceptor) domain Alide2_0685 PF18698 Histidine kinase sensor domain Alide2_0685 PF00672 HAMP domain Alide2_0685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0685 PF00989 PAS fold Alide2_0688 PF01050 Mannose-6-phosphate isomerase Alide2_0688 PF00483 Nucleotidyl transferase Alide2_0691 PF13614 AAA domain Alide2_0693 PF01471 Putative peptidoglycan binding domain Alide2_0693 PF13401 AAA domain Alide2_0698 PF13537 Glutamine amidotransferase domain Alide2_0698 PF00733 Asparagine synthase Alide2_0699 PF00534 Glycosyl transferases group 1 Alide2_0701 PF13439 Glycosyltransferase Family 4 Alide2_0701 PF00534 Glycosyl transferases group 1 Alide2_0708 PF00535 Glycosyl transferase family 2 Alide2_0710 PF01370 NAD dependent epimerase/dehydratase family Alide2_0711 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Alide2_0711 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Alide2_0711 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Alide2_0718 PF00501 AMP-binding enzyme Alide2_0718 PF13193 AMP-binding enzyme C-terminal domain Alide2_0719 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Alide2_0719 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Alide2_0720 PF00512 His Kinase A (phospho-acceptor) domain Alide2_0720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0720 PF00672 HAMP domain Alide2_0721 PF00072 Response regulator receiver domain Alide2_0721 PF00158 Sigma-54 interaction domain Alide2_0721 PF02954 Bacterial regulatory protein, Fis family Alide2_0724 PF00892 EamA-like transporter family Alide2_0725 PF01040 UbiA prenyltransferase family Alide2_0726 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0726 PF03466 LysR substrate binding domain Alide2_0727 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0729 PF01176 Translation initiation factor 1A / IF-1 Alide2_0730 PF13532 2OG-Fe(II) oxygenase superfamily Alide2_0731 PF13193 AMP-binding enzyme C-terminal domain Alide2_0731 PF00501 AMP-binding enzyme Alide2_0732 PF00970 Oxidoreductase FAD-binding domain Alide2_0732 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_0732 PF00175 Oxidoreductase NAD-binding domain Alide2_0736 PF05981 CreA protein Alide2_0739 PF00005 ABC transporter Alide2_0739 PF00664 ABC transporter transmembrane region Alide2_0742 PF14492 Elongation Factor G, domain II Alide2_0742 PF03764 Elongation factor G, domain IV Alide2_0742 PF03144 Elongation factor Tu domain 2 Alide2_0742 PF00009 Elongation factor Tu GTP binding domain Alide2_0742 PF00679 Elongation factor G C-terminus Alide2_0744 PF00482 Type II secretion system (T2SS), protein F Alide2_0745 PF00296 Luciferase-like monooxygenase Alide2_0747 PF00437 Type II/IV secretion system protein Alide2_0748 PF03958 Bacterial type II/III secretion system short domain Alide2_0748 PF00263 Bacterial type II and III secretion system protein Alide2_0753 PF07963 Prokaryotic N-terminal methylation motif Alide2_0753 PF11612 Type II secretion system (T2SS), protein J Alide2_0754 PF02501 Type II secretion system (T2SS), protein I Alide2_0754 PF07963 Prokaryotic N-terminal methylation motif Alide2_0756 PF07963 Prokaryotic N-terminal methylation motif Alide2_0756 PF08334 Type II secretion system (T2SS), protein G Alide2_0759 PF02654 Cobalamin-5-phosphate synthase Alide2_0760 PF00585 C-terminal regulatory domain of Threonine dehydratase Alide2_0760 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_0761 PF02566 OsmC-like protein Alide2_0762 PF03232 Ubiquinone biosynthesis protein COQ7 Alide2_0763 PF13609 Gram-negative porin Alide2_0765 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_0766 PF07687 Peptidase dimerisation domain Alide2_0766 PF01546 Peptidase family M20/M25/M40 Alide2_0767 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide2_0767 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_0768 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide2_0768 PF00005 ABC transporter Alide2_0769 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide2_0769 PF00005 ABC transporter Alide2_0770 PF01161 Phosphatidylethanolamine-binding protein Alide2_0771 PF01418 Helix-turn-helix domain, rpiR family Alide2_0771 PF02685 Glucokinase Alide2_0771 PF01380 SIS domain Alide2_0772 PF00923 Transaldolase/Fructose-6-phosphate aldolase Alide2_0773 PF00342 Phosphoglucose isomerase Alide2_0774 PF00118 TCP-1/cpn60 chaperonin family Alide2_0775 PF00166 Chaperonin 10 Kd subunit Alide2_0776 PF01467 Cytidylyltransferase-like Alide2_0777 PF00438 S-adenosylmethionine synthetase, N-terminal domain Alide2_0777 PF02773 S-adenosylmethionine synthetase, C-terminal domain Alide2_0777 PF02772 S-adenosylmethionine synthetase, central domain Alide2_0779 PF03279 Bacterial lipid A biosynthesis acyltransferase Alide2_0780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0780 PF03466 LysR substrate binding domain Alide2_0781 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0782 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0783 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide2_0784 PF04909 Amidohydrolase Alide2_0785 PF01926 50S ribosome-binding GTPase Alide2_0786 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_0787 PF05140 ResB-like family Alide2_0789 PF00174 Oxidoreductase molybdopterin binding domain Alide2_0790 PF01794 Ferric reductase like transmembrane component Alide2_0792 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Alide2_0792 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Alide2_0794 PF01491 Frataxin-like domain Alide2_0795 PF00912 Transglycosylase Alide2_0795 PF00905 Penicillin binding protein transpeptidase domain Alide2_0795 PF17092 Penicillin-binding protein OB-like domain Alide2_0800 PF03958 Bacterial type II/III secretion system short domain Alide2_0800 PF00263 Bacterial type II and III secretion system protein Alide2_0800 PF11741 AMIN domain Alide2_0800 PF07660 Secretin and TonB N terminus short domain Alide2_0801 PF00746 LPXTG cell wall anchor motif Alide2_0802 PF01761 3-dehydroquinate synthase Alide2_0803 PF13286 Phosphohydrolase-associated domain Alide2_0803 PF01966 HD domain Alide2_0806 PF00171 Aldehyde dehydrogenase family Alide2_0810 PF01645 Conserved region in glutamate synthase Alide2_0810 PF01493 GXGXG motif Alide2_0810 PF04898 Glutamate synthase central domain Alide2_0810 PF00310 Glutamine amidotransferases class-II Alide2_0811 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_0811 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Alide2_0813 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_0816 PF17284 Spermidine synthase tetramerisation domain Alide2_0817 PF02675 S-adenosylmethionine decarboxylase Alide2_0818 PF00005 ABC transporter Alide2_0819 PF02405 Permease MlaE Alide2_0820 PF02470 MlaD protein Alide2_0824 PF00072 Response regulator receiver domain Alide2_0824 PF00990 Diguanylate cyclase, GGDEF domain Alide2_0825 PF00005 ABC transporter Alide2_0826 PF01061 ABC-2 type transporter Alide2_0827 PF01722 BolA-like protein Alide2_0828 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Alide2_0829 PF01634 ATP phosphoribosyltransferase Alide2_0830 PF00815 Histidinol dehydrogenase Alide2_0833 PF00155 Aminotransferase class I and II Alide2_0834 PF00475 Imidazoleglycerol-phosphate dehydratase Alide2_0835 PF00117 Glutamine amidotransferase class-I Alide2_0836 PF00977 Histidine biosynthesis protein Alide2_0839 PF17103 Stealth protein CR4, conserved region 4 Alide2_0839 PF11380 Stealth protein CR2, conserved region 2 Alide2_0839 PF00534 Glycosyl transferases group 1 Alide2_0839 PF17102 Stealth protein CR3, conserved region 3 Alide2_0839 PF17101 Stealth protein CR1, conserved region 1 Alide2_0845 PF16363 GDP-mannose 4,6 dehydratase Alide2_0846 PF00977 Histidine biosynthesis protein Alide2_0847 PF01502 Phosphoribosyl-AMP cyclohydrolase Alide2_0848 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Alide2_0851 PF01230 HIT domain Alide2_0852 PF02416 mttA/Hcf106 family Alide2_0853 PF02416 mttA/Hcf106 family Alide2_0854 PF00902 Sec-independent protein translocase protein (TatC) Alide2_0855 PF17820 PDZ domain Alide2_0855 PF13180 PDZ domain Alide2_0856 PF01784 NIF3 (NGG1p interacting factor 3) Alide2_0857 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Alide2_0858 PF01741 Large-conductance mechanosensitive channel, MscL Alide2_0859 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Alide2_0859 PF00355 Rieske [2Fe-2S] domain Alide2_0860 PF00032 Cytochrome b(C-terminal)/b6/petD Alide2_0860 PF00033 Cytochrome b/b6/petB Alide2_0861 PF02167 Cytochrome C1 family Alide2_0862 PF00043 Glutathione S-transferase, C-terminal domain Alide2_0862 PF02798 Glutathione S-transferase, N-terminal domain Alide2_0863 PF04386 Stringent starvation protein B Alide2_0865 PF02810 SEC-C motif Alide2_0865 PF01043 SecA preprotein cross-linking domain Alide2_0865 PF07516 SecA Wing and Scaffold domain Alide2_0865 PF07517 SecA DEAD-like domain Alide2_0868 PF00293 NUDIX domain Alide2_0869 PF03884 DNA gyrase inhibitor YacG Alide2_0870 PF07072 Cell division protein Alide2_0871 PF01121 Dephospho-CoA kinase Alide2_0872 PF01478 Type IV leader peptidase family Alide2_0872 PF06750 Bacterial Peptidase A24 N-terminal domain Alide2_0873 PF00482 Type II secretion system (T2SS), protein F Alide2_0874 PF00437 Type II/IV secretion system protein Alide2_0874 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alide2_0875 PF00589 Phage integrase family Alide2_0881 PF01695 IstB-like ATP binding protein Alide2_0882 PF00665 Integrase core domain Alide2_0886 PF00665 Integrase core domain Alide2_0886 PF13333 Integrase core domain Alide2_0886 PF13276 HTH-like domain Alide2_0887 PF01527 Transposase Alide2_0888 PF00348 Polyprenyl synthetase Alide2_0889 PF00829 Ribosomal prokaryotic L21 protein Alide2_0890 PF01016 Ribosomal L27 protein Alide2_0891 PF01018 GTP1/OBG Alide2_0891 PF01926 50S ribosome-binding GTPase Alide2_0892 PF00696 Amino acid kinase family Alide2_0892 PF01472 PUA domain Alide2_0893 PF00293 NUDIX domain Alide2_0894 PF04073 Aminoacyl-tRNA editing domain Alide2_0894 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alide2_0894 PF03129 Anticodon binding domain Alide2_0895 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Alide2_0895 PF01464 Transglycosylase SLT domain Alide2_0896 PF01595 Cyclin M transmembrane N-terminal domain Alide2_0896 PF00571 CBS domain Alide2_0896 PF03471 Transporter associated domain Alide2_0897 PF02190 ATP-dependent protease La (LON) substrate-binding domain Alide2_0897 PF05362 Lon protease (S16) C-terminal proteolytic domain Alide2_0897 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_0898 PF00462 Glutaredoxin Alide2_0899 PF17827 PrmC N-terminal domain Alide2_0899 PF05175 Methyltransferase small domain Alide2_0900 PF00472 RF-1 domain Alide2_0900 PF03462 PCRF domain Alide2_0901 PF01488 Shikimate / quinate 5-dehydrogenase Alide2_0901 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Alide2_0901 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Alide2_0903 PF03466 LysR substrate binding domain Alide2_0903 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0904 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0906 PF00924 Mechanosensitive ion channel Alide2_0906 PF12794 Mechanosensitive ion channel inner membrane domain 1 Alide2_0906 PF12795 Mechanosensitive ion channel porin domain Alide2_0907 PF03009 Glycerophosphoryl diester phosphodiesterase family Alide2_0908 PF00005 ABC transporter Alide2_0908 PF17912 MalK OB fold domain Alide2_0909 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_0910 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_0911 PF13416 Bacterial extracellular solute-binding protein Alide2_0912 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide2_0912 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_0916 PF01209 ubiE/COQ5 methyltransferase family Alide2_0919 PF03109 ABC1 family Alide2_0923 PF01336 OB-fold nucleic acid binding domain Alide2_0923 PF00152 tRNA synthetases class II (D, K and N) Alide2_0923 PF02938 GAD domain Alide2_0926 PF13091 PLD-like domain Alide2_0927 PF01227 GTP cyclohydrolase I Alide2_0930 PF00512 His Kinase A (phospho-acceptor) domain Alide2_0930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0930 PF00989 PAS fold Alide2_0931 PF00196 Bacterial regulatory proteins, luxR family Alide2_0931 PF00072 Response regulator receiver domain Alide2_0932 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_0935 PF01810 LysE type translocator Alide2_0936 PF01425 Amidase Alide2_0937 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide2_0938 PF00005 ABC transporter Alide2_0938 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide2_0939 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide2_0939 PF00005 ABC transporter Alide2_0940 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_0940 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide2_0941 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_0942 PF00037 4Fe-4S binding domain Alide2_0943 PF01195 Peptidyl-tRNA hydrolase Alide2_0944 PF01386 Ribosomal L25p family Alide2_0944 PF14693 Ribosomal protein TL5, C-terminal domain Alide2_0945 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Alide2_0945 PF14572 Phosphoribosyl synthetase-associated domain Alide2_0946 PF00288 GHMP kinases N terminal domain Alide2_0946 PF08544 GHMP kinases C terminal Alide2_0949 PF06827 Zinc finger found in FPG and IleRS Alide2_0949 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Alide2_0949 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Alide2_0951 PF10576 Iron-sulfur binding domain of endonuclease III Alide2_0951 PF00730 HhH-GPD superfamily base excision DNA repair protein Alide2_0951 PF14815 NUDIX domain Alide2_0951 PF00633 Helix-hairpin-helix motif Alide2_0952 PF03668 P-loop ATPase protein family Alide2_0953 PF02463 RecF/RecN/SMC N terminal domain Alide2_0954 PF01513 ATP-NAD kinase Alide2_0955 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Alide2_0955 PF01628 HrcA protein C terminal domain Alide2_0958 PF13276 HTH-like domain Alide2_0958 PF00665 Integrase core domain Alide2_0958 PF13333 Integrase core domain Alide2_0959 PF01527 Transposase Alide2_0963 PF01609 Transposase DDE domain Alide2_0963 PF13006 Insertion element 4 transposase N-terminal Alide2_0965 PF01292 Prokaryotic cytochrome b561 Alide2_0967 PF00512 His Kinase A (phospho-acceptor) domain Alide2_0967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_0967 PF08521 Two-component sensor kinase N-terminal Alide2_0968 PF00486 Transcriptional regulatory protein, C terminal Alide2_0968 PF00072 Response regulator receiver domain Alide2_0971 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_0971 PF00107 Zinc-binding dehydrogenase Alide2_0972 PF10282 Lactonase, 7-bladed beta-propeller Alide2_0973 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide2_0973 PF01464 Transglycosylase SLT domain Alide2_0975 PF00330 Aconitase family (aconitate hydratase) Alide2_0975 PF00694 Aconitase C-terminal domain Alide2_0976 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0977 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0979 PF13378 Enolase C-terminal domain-like Alide2_0981 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_0982 PF00701 Dihydrodipicolinate synthetase family Alide2_0983 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_0983 PF03466 LysR substrate binding domain Alide2_0984 PF00448 SRP54-type protein, GTPase domain Alide2_0984 PF02881 SRP54-type protein, helical bundle domain Alide2_0985 PF00675 Insulinase (Peptidase family M16) Alide2_0985 PF05193 Peptidase M16 inactive domain Alide2_0986 PF05193 Peptidase M16 inactive domain Alide2_0988 PF01467 Cytidylyltransferase-like Alide2_0989 PF04972 BON domain Alide2_0991 PF07043 Protein of unknown function (DUF1328) Alide2_0992 PF07730 Histidine kinase Alide2_0992 PF17200 Single Cache domain 2 Alide2_0993 PF00072 Response regulator receiver domain Alide2_0993 PF00196 Bacterial regulatory proteins, luxR family Alide2_0995 PF00899 ThiF family Alide2_0996 PF13180 PDZ domain Alide2_0996 PF03572 Peptidase family S41 Alide2_0997 PF00300 Histidine phosphatase superfamily (branch 1) Alide2_0998 PF00581 Rhodanese-like domain Alide2_0999 PF00462 Glutaredoxin Alide2_1000 PF02556 Preprotein translocase subunit SecB Alide2_1001 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Alide2_1001 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Alide2_1003 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1004 PF01925 Sulfite exporter TauE/SafE Alide2_1005 PF07171 MlrC C-terminus Alide2_1005 PF07364 Metallopeptidase family M81 Alide2_1006 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1007 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1007 PF03466 LysR substrate binding domain Alide2_1008 PF02569 Pantoate-beta-alanine ligase Alide2_1009 PF02548 Ketopantoate hydroxymethyltransferase Alide2_1011 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Alide2_1011 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Alide2_1012 PF02445 Quinolinate synthetase A protein Alide2_1013 PF00425 chorismate binding enzyme Alide2_1013 PF04715 Anthranilate synthase component I, N terminal region Alide2_1015 PF00890 FAD binding domain Alide2_1015 PF02910 Fumarate reductase flavoprotein C-term Alide2_1018 PF02616 Segregation and condensation protein ScpA Alide2_1021 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide2_1021 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide2_1022 PF01070 FMN-dependent dehydrogenase Alide2_1023 PF00890 FAD binding domain Alide2_1024 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Alide2_1024 PF12833 Helix-turn-helix domain Alide2_1025 PF00117 Glutamine amidotransferase class-I Alide2_1026 PF01168 Alanine racemase, N-terminal domain Alide2_1027 PF03594 Benzoate membrane transport protein Alide2_1028 PF00392 Bacterial regulatory proteins, gntR family Alide2_1028 PF00155 Aminotransferase class I and II Alide2_1030 PF01588 Putative tRNA binding domain Alide2_1030 PF09334 tRNA synthetases class I (M) Alide2_1033 PF00581 Rhodanese-like domain Alide2_1034 PF02769 AIR synthase related protein, C-terminal domain Alide2_1034 PF00586 AIR synthase related protein, N-terminal domain Alide2_1035 PF03595 Voltage-dependent anion channel Alide2_1036 PF10609 NUBPL iron-transfer P-loop NTPase Alide2_1038 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1040 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1041 PF02515 CoA-transferase family III Alide2_1042 PF00392 Bacterial regulatory proteins, gntR family Alide2_1042 PF07729 FCD domain Alide2_1044 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide2_1045 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide2_1045 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alide2_1045 PF10531 SLBB domain Alide2_1046 PF12838 4Fe-4S dicluster domain Alide2_1046 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide2_1046 PF00384 Molybdopterin oxidoreductase Alide2_1046 PF01568 Molydopterin dinucleotide binding domain Alide2_1046 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Alide2_1052 PF00384 Molybdopterin oxidoreductase Alide2_1052 PF01568 Molydopterin dinucleotide binding domain Alide2_1052 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide2_1053 PF13247 4Fe-4S dicluster domain Alide2_1057 PF02634 FdhD/NarQ family Alide2_1062 PF01152 Bacterial-like globin Alide2_1063 PF03354 Phage Terminase Alide2_1065 PF00694 Aconitase C-terminal domain Alide2_1066 PF00330 Aconitase family (aconitate hydratase) Alide2_1067 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1068 PF00488 MutS domain V Alide2_1068 PF01713 Smr domain Alide2_1070 PF04002 RadC-like JAB domain Alide2_1071 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide2_1072 PF02401 LytB protein Alide2_1073 PF03471 Transporter associated domain Alide2_1073 PF00571 CBS domain Alide2_1073 PF01595 Cyclin M transmembrane N-terminal domain Alide2_1075 PF02403 Seryl-tRNA synthetase N-terminal domain Alide2_1075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alide2_1076 PF01062 Bestrophin, RFP-TM, chloride channel Alide2_1079 PF00589 Phage integrase family Alide2_1079 PF13356 Arm DNA-binding domain Alide2_1083 PF18073 Rubredoxin metal binding domain Alide2_1088 PF01062 Bestrophin, RFP-TM, chloride channel Alide2_1090 PF02397 Bacterial sugar transferase Alide2_1091 PF00512 His Kinase A (phospho-acceptor) domain Alide2_1091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_1093 PF00486 Transcriptional regulatory protein, C terminal Alide2_1093 PF00072 Response regulator receiver domain Alide2_1094 PF00579 tRNA synthetases class I (W and Y) Alide2_1095 PF02163 Peptidase family M50 Alide2_1096 PF00672 HAMP domain Alide2_1096 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_1096 PF02203 Tar ligand binding domain homologue Alide2_1097 PF01300 Telomere recombination Alide2_1098 PF02811 PHP domain Alide2_1099 PF02203 Tar ligand binding domain homologue Alide2_1099 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_1099 PF00672 HAMP domain Alide2_1100 PF02272 DHHA1 domain Alide2_1100 PF17768 RecJ OB domain Alide2_1100 PF01368 DHH family Alide2_1102 PF12704 MacB-like periplasmic core domain Alide2_1102 PF02687 FtsX-like permease family Alide2_1103 PF00005 ABC transporter Alide2_1104 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_1106 PF00920 Dehydratase family Alide2_1107 PF00920 Dehydratase family Alide2_1109 PF00210 Ferritin-like domain Alide2_1110 PF01790 Prolipoprotein diacylglyceryl transferase Alide2_1111 PF00392 Bacterial regulatory proteins, gntR family Alide2_1111 PF07729 FCD domain Alide2_1113 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1114 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1115 PF00501 AMP-binding enzyme Alide2_1115 PF13193 AMP-binding enzyme C-terminal domain Alide2_1119 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide2_1122 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_1122 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Alide2_1123 PF12801 4Fe-4S binding domain Alide2_1123 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Alide2_1123 PF13746 4Fe-4S dicluster domain Alide2_1126 PF13545 Crp-like helix-turn-helix domain Alide2_1126 PF00027 Cyclic nucleotide-binding domain Alide2_1127 PF04055 Radical SAM superfamily Alide2_1127 PF06969 HemN C-terminal domain Alide2_1130 PF03707 Bacterial signalling protein N terminal repeat Alide2_1130 PF00990 Diguanylate cyclase, GGDEF domain Alide2_1130 PF00563 EAL domain Alide2_1133 PF07715 TonB-dependent Receptor Plug Domain Alide2_1133 PF00593 TonB dependent receptor Alide2_1134 PF07685 CobB/CobQ-like glutamine amidotransferase domain Alide2_1134 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide2_1135 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Alide2_1137 PF01032 FecCD transport family Alide2_1138 PF00005 ABC transporter Alide2_1139 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Alide2_1140 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Alide2_1140 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Alide2_1141 PF08241 Methyltransferase domain Alide2_1142 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alide2_1143 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1144 PF02515 CoA-transferase family III Alide2_1147 PF02515 CoA-transferase family III Alide2_1149 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1150 PF13577 SnoaL-like domain Alide2_1151 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1152 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1152 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1152 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1153 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1153 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1153 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1157 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1157 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide2_1157 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide2_1158 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1161 PF00583 Acetyltransferase (GNAT) family Alide2_1161 PF13380 CoA binding domain Alide2_1161 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide2_1162 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1162 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1162 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1163 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1164 PF00108 Thiolase, N-terminal domain Alide2_1164 PF02803 Thiolase, C-terminal domain Alide2_1166 PF00108 Thiolase, N-terminal domain Alide2_1166 PF02803 Thiolase, C-terminal domain Alide2_1167 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1168 PF01012 Electron transfer flavoprotein domain Alide2_1169 PF00766 Electron transfer flavoprotein FAD-binding domain Alide2_1169 PF01012 Electron transfer flavoprotein domain Alide2_1170 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1171 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1171 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1171 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1172 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1173 PF04430 Protein of unknown function (DUF498/DUF598) Alide2_1174 PF00155 Aminotransferase class I and II Alide2_1175 PF01842 ACT domain Alide2_1175 PF03447 Homoserine dehydrogenase, NAD binding domain Alide2_1175 PF00742 Homoserine dehydrogenase Alide2_1177 PF01850 PIN domain Alide2_1178 PF14821 Threonine synthase N terminus Alide2_1178 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_1179 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Alide2_1180 PF03453 MoeA N-terminal region (domain I and II) Alide2_1180 PF03454 MoeA C-terminal region (domain IV) Alide2_1180 PF00994 Probable molybdopterin binding domain Alide2_1182 PF00701 Dihydrodipicolinate synthetase family Alide2_1186 PF02391 MoaE protein Alide2_1187 PF10431 C-terminal, D2-small domain, of ClpB protein Alide2_1187 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_1187 PF07724 AAA domain (Cdc48 subfamily) Alide2_1187 PF02861 Clp amino terminal domain, pathogenicity island component Alide2_1187 PF17871 AAA lid domain Alide2_1189 PF00171 Aldehyde dehydrogenase family Alide2_1191 PF05175 Methyltransferase small domain Alide2_1192 PF01207 Dihydrouridine synthase (Dus) Alide2_1193 PF13091 PLD-like domain Alide2_1194 PF01872 RibD C-terminal domain Alide2_1194 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Alide2_1195 PF07963 Prokaryotic N-terminal methylation motif Alide2_1195 PF00114 Pilin (bacterial filament) Alide2_1196 PF05567 Neisseria PilC beta-propeller domain Alide2_1201 PF03186 CobD/Cbib protein Alide2_1203 PF07685 CobB/CobQ-like glutamine amidotransferase domain Alide2_1203 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Alide2_1204 PF02277 Phosphoribosyltransferase Alide2_1206 PF00730 HhH-GPD superfamily base excision DNA repair protein Alide2_1206 PF00633 Helix-hairpin-helix motif Alide2_1206 PF10576 Iron-sulfur binding domain of endonuclease III Alide2_1207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1207 PF03466 LysR substrate binding domain Alide2_1208 PF01425 Amidase Alide2_1209 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1211 PF00155 Aminotransferase class I and II Alide2_1213 PF00248 Aldo/keto reductase family Alide2_1216 PF01152 Bacterial-like globin Alide2_1217 PF01814 Hemerythrin HHE cation binding domain Alide2_1217 PF04405 Domain of Unknown function (DUF542) Alide2_1218 PF02082 Transcriptional regulator Alide2_1219 PF08298 PrkA AAA domain Alide2_1219 PF06798 PrkA serine protein kinase C-terminal domain Alide2_1220 PF04285 Protein of unknown function (DUF444) Alide2_1221 PF04293 SpoVR like protein Alide2_1222 PF03180 NLPA lipoprotein Alide2_1223 PF06580 Histidine kinase Alide2_1223 PF07694 5TMR of 5TMR-LYT Alide2_1224 PF00206 Lyase Alide2_1224 PF14698 Argininosuccinate lyase C-terminal Alide2_1225 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1227 PF00149 Calcineurin-like phosphoesterase Alide2_1228 PF03466 LysR substrate binding domain Alide2_1228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1229 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1230 PF17763 Glutaminase/Asparaginase C-terminal domain Alide2_1230 PF00710 Asparaginase, N-terminal Alide2_1231 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1231 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1231 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1233 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1233 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1233 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1234 PF02515 CoA-transferase family III Alide2_1235 PF02142 MGS-like domain Alide2_1236 PF00912 Transglycosylase Alide2_1236 PF14814 Bifunctional transglycosylase second domain Alide2_1236 PF00905 Penicillin binding protein transpeptidase domain Alide2_1237 PF13689 YfiR/HmsC-like Alide2_1238 PF00563 EAL domain Alide2_1238 PF13188 PAS domain Alide2_1238 PF00990 Diguanylate cyclase, GGDEF domain Alide2_1238 PF03707 Bacterial signalling protein N terminal repeat Alide2_1239 PF00691 OmpA family Alide2_1240 PF01070 FMN-dependent dehydrogenase Alide2_1242 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1242 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1242 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1243 PF02515 CoA-transferase family III Alide2_1244 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1245 PF03466 LysR substrate binding domain Alide2_1245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1246 PF00817 impB/mucB/samB family Alide2_1246 PF11799 impB/mucB/samB family C-terminal domain Alide2_1247 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_1247 PF08447 PAS fold Alide2_1248 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Alide2_1248 PF14489 QueF-like protein Alide2_1250 PF03883 Peroxide stress protein YaaA Alide2_1251 PF00575 S1 RNA binding domain Alide2_1251 PF10150 Ribonuclease E/G family Alide2_1251 PF12111 Polyribonucleotide phosphorylase C terminal Alide2_1252 PF00849 RNA pseudouridylate synthase Alide2_1252 PF01479 S4 domain Alide2_1253 PF13419 Haloacid dehalogenase-like hydrolase Alide2_1255 PF06965 Na+/H+ antiporter 1 Alide2_1255 PF01343 Peptidase family S49 Alide2_1256 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide2_1257 PF02545 Maf-like protein Alide2_1258 PF02620 Large ribosomal RNA subunit accumulation protein YceD Alide2_1259 PF01783 Ribosomal L32p protein family Alide2_1260 PF02504 Fatty acid synthesis protein Alide2_1261 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Alide2_1261 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Alide2_1262 PF00698 Acyl transferase domain Alide2_1264 PF00550 Phosphopantetheine attachment site Alide2_1265 PF02801 Beta-ketoacyl synthase, C-terminal domain Alide2_1265 PF00109 Beta-ketoacyl synthase, N-terminal domain Alide2_1267 PF04542 Sigma-70 region 2 Alide2_1267 PF08281 Sigma-70, region 4 Alide2_1270 PF13180 PDZ domain Alide2_1271 PF00009 Elongation factor Tu GTP binding domain Alide2_1271 PF03144 Elongation factor Tu domain 2 Alide2_1271 PF06421 GTP-binding protein LepA C-terminus Alide2_1271 PF00679 Elongation factor G C-terminus Alide2_1272 PF10502 Signal peptidase, peptidase S26 Alide2_1274 PF14622 Ribonuclease-III-like Alide2_1274 PF00035 Double-stranded RNA binding motif Alide2_1275 PF01926 50S ribosome-binding GTPase Alide2_1275 PF07650 KH domain Alide2_1276 PF11967 Recombination protein O N terminal Alide2_1276 PF02565 Recombination protein O C terminal Alide2_1277 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Alide2_1278 PF01648 4'-phosphopantetheinyl transferase superfamily Alide2_1279 PF00933 Glycosyl hydrolase family 3 N terminal domain Alide2_1280 PF00365 Phosphofructokinase Alide2_1281 PF00005 ABC transporter Alide2_1282 PF00005 ABC transporter Alide2_1282 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_1283 PF02653 Branched-chain amino acid transport system / permease component Alide2_1283 PF11862 Domain of unknown function (DUF3382) Alide2_1284 PF02653 Branched-chain amino acid transport system / permease component Alide2_1285 PF13458 Periplasmic binding protein Alide2_1287 PF01336 OB-fold nucleic acid binding domain Alide2_1287 PF00152 tRNA synthetases class II (D, K and N) Alide2_1288 PF02397 Bacterial sugar transferase Alide2_1289 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Alide2_1290 PF08003 Protein of unknown function (DUF1698) Alide2_1292 PF13439 Glycosyltransferase Family 4 Alide2_1293 PF00132 Bacterial transferase hexapeptide (six repeats) Alide2_1295 PF02719 Polysaccharide biosynthesis protein Alide2_1297 PF02325 YGGT family Alide2_1298 PF17848 Acetyl-coA carboxylase zinc finger domain Alide2_1298 PF01039 Carboxyl transferase domain Alide2_1299 PF00290 Tryptophan synthase alpha chain Alide2_1300 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_1301 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Alide2_1302 PF01416 tRNA pseudouridine synthase Alide2_1304 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alide2_1304 PF02774 Semialdehyde dehydrogenase, dimerisation domain Alide2_1305 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide2_1306 PF00694 Aconitase C-terminal domain Alide2_1307 PF08085 Entericidin EcnA/B family Alide2_1308 PF00330 Aconitase family (aconitate hydratase) Alide2_1310 PF00753 Metallo-beta-lactamase superfamily Alide2_1310 PF10996 Beta-Casp domain Alide2_1310 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Alide2_1311 PF00067 Cytochrome P450 Alide2_1312 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Alide2_1313 PF02441 Flavoprotein Alide2_1318 PF01212 Beta-eliminating lyase Alide2_1320 PF00684 DnaJ central domain Alide2_1320 PF01556 DnaJ C terminal domain Alide2_1320 PF00226 DnaJ domain Alide2_1321 PF00012 Hsp70 protein Alide2_1322 PF01025 GrpE Alide2_1323 PF01250 Ribosomal protein S6 Alide2_1325 PF01084 Ribosomal protein S18 Alide2_1326 PF03948 Ribosomal protein L9, C-terminal domain Alide2_1326 PF01281 Ribosomal protein L9, N-terminal domain Alide2_1327 PF03796 DnaB-like helicase C terminal domain Alide2_1327 PF00772 DnaB-like helicase N terminal domain Alide2_1328 PF00171 Aldehyde dehydrogenase family Alide2_1329 PF02562 PhoH-like protein Alide2_1329 PF13638 PIN domain Alide2_1330 PF00578 AhpC/TSA family Alide2_1335 PF03949 Malic enzyme, NAD binding domain Alide2_1335 PF01515 Phosphate acetyl/butaryl transferase Alide2_1335 PF00390 Malic enzyme, N-terminal domain Alide2_1336 PF00860 Permease family Alide2_1337 PF00672 HAMP domain Alide2_1337 PF02203 Tar ligand binding domain homologue Alide2_1337 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_1339 PF01546 Peptidase family M20/M25/M40 Alide2_1339 PF07687 Peptidase dimerisation domain Alide2_1340 PF07687 Peptidase dimerisation domain Alide2_1340 PF01546 Peptidase family M20/M25/M40 Alide2_1342 PF00392 Bacterial regulatory proteins, gntR family Alide2_1342 PF07729 FCD domain Alide2_1343 PF03466 LysR substrate binding domain Alide2_1343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1344 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide2_1345 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1346 PF05161 MOFRL family Alide2_1346 PF13660 Domain of unknown function (DUF4147) Alide2_1348 PF00202 Aminotransferase class-III Alide2_1349 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide2_1350 PF03466 LysR substrate binding domain Alide2_1350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1351 PF00205 Thiamine pyrophosphate enzyme, central domain Alide2_1351 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide2_1351 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide2_1352 PF01261 Xylose isomerase-like TIM barrel Alide2_1353 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide2_1353 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide2_1357 PF00576 HIUase/Transthyretin family Alide2_1361 PF00692 dUTPase Alide2_1362 PF04228 Putative neutral zinc metallopeptidase Alide2_1363 PF00271 Helicase conserved C-terminal domain Alide2_1363 PF00270 DEAD/DEAH box helicase Alide2_1366 PF12679 ABC-2 family transporter protein Alide2_1367 PF00005 ABC transporter Alide2_1368 PF05048 Periplasmic copper-binding protein (NosD) Alide2_1369 PF12801 4Fe-4S binding domain Alide2_1369 PF04205 FMN-binding domain Alide2_1370 PF13473 Cupredoxin-like domain Alide2_1370 PF18793 Nitrous oxide reductase propeller repeat 2 Alide2_1370 PF18764 Nitrous oxide reductase propeller repeat Alide2_1372 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_1374 PF00149 Calcineurin-like phosphoesterase Alide2_1375 PF00816 H-NS histone family Alide2_1376 PF00330 Aconitase family (aconitate hydratase) Alide2_1376 PF00694 Aconitase C-terminal domain Alide2_1377 PF01494 FAD binding domain Alide2_1379 PF07690 Major Facilitator Superfamily Alide2_1380 PF04397 LytTr DNA-binding domain Alide2_1380 PF00072 Response regulator receiver domain Alide2_1381 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_1381 PF06580 Histidine kinase Alide2_1384 PF02673 Bacitracin resistance protein BacA Alide2_1386 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_1387 PF00873 AcrB/AcrD/AcrF family Alide2_1388 PF00873 AcrB/AcrD/AcrF family Alide2_1389 PF02321 Outer membrane efflux protein Alide2_1390 PF05188 MutS domain II Alide2_1390 PF00488 MutS domain V Alide2_1390 PF05192 MutS domain III Alide2_1390 PF05190 MutS family domain IV Alide2_1390 PF01624 MutS domain I Alide2_1392 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide2_1396 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1397 PF01070 FMN-dependent dehydrogenase Alide2_1399 PF09423 PhoD-like phosphatase Alide2_1399 PF16655 PhoD-like phosphatase, N-terminal domain Alide2_1400 PF00072 Response regulator receiver domain Alide2_1400 PF00990 Diguanylate cyclase, GGDEF domain Alide2_1401 PF01975 Survival protein SurE Alide2_1403 PF01476 LysM domain Alide2_1403 PF01551 Peptidase family M23 Alide2_1404 PF00849 RNA pseudouridylate synthase Alide2_1404 PF01479 S4 domain Alide2_1405 PF04079 Segregation and condensation complex subunit ScpB Alide2_1406 PF01479 S4 domain Alide2_1406 PF00849 RNA pseudouridylate synthase Alide2_1407 PF00334 Nucleoside diphosphate kinase Alide2_1408 PF04055 Radical SAM superfamily Alide2_1411 PF04551 GcpE protein Alide2_1412 PF13393 Histidyl-tRNA synthetase Alide2_1412 PF03129 Anticodon binding domain Alide2_1414 PF13360 PQQ-like domain Alide2_1415 PF01926 50S ribosome-binding GTPase Alide2_1415 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Alide2_1416 PF17209 Hfq protein Alide2_1417 PF16360 GTP-binding GTPase Middle Region Alide2_1417 PF13167 GTP-binding GTPase N-terminal Alide2_1417 PF01926 50S ribosome-binding GTPase Alide2_1418 PF01145 SPFH domain / Band 7 family Alide2_1418 PF12221 Bacterial membrane protein N terminal Alide2_1419 PF01145 SPFH domain / Band 7 family Alide2_1421 PF13393 Histidyl-tRNA synthetase Alide2_1422 PF00709 Adenylosuccinate synthetase Alide2_1424 PF01479 S4 domain Alide2_1424 PF00849 RNA pseudouridylate synthase Alide2_1432 PF00989 PAS fold Alide2_1432 PF00512 His Kinase A (phospho-acceptor) domain Alide2_1432 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_1433 PF02954 Bacterial regulatory protein, Fis family Alide2_1433 PF00158 Sigma-54 interaction domain Alide2_1433 PF00072 Response regulator receiver domain Alide2_1434 PF03372 Endonuclease/Exonuclease/phosphatase family Alide2_1436 PF03814 Potassium-transporting ATPase A subunit Alide2_1438 PF02669 K+-transporting ATPase, c chain Alide2_1439 PF02702 Osmosensitive K+ channel His kinase sensor domain Alide2_1439 PF13493 Domain of unknown function (DUF4118) Alide2_1439 PF00512 His Kinase A (phospho-acceptor) domain Alide2_1439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_1439 PF13492 GAF domain Alide2_1440 PF00486 Transcriptional regulatory protein, C terminal Alide2_1440 PF00072 Response regulator receiver domain Alide2_1441 PF13340 Putative transposase of IS4/5 family (DUF4096) Alide2_1444 PF00691 OmpA family Alide2_1444 PF13677 Membrane MotB of proton-channel complex MotA/MotB Alide2_1446 PF00186 Dihydrofolate reductase Alide2_1447 PF00303 Thymidylate synthase Alide2_1448 PF02913 FAD linked oxidases, C-terminal domain Alide2_1448 PF01565 FAD binding domain Alide2_1450 PF03631 Virulence factor BrkB Alide2_1452 PF01593 Flavin containing amine oxidoreductase Alide2_1453 PF02203 Tar ligand binding domain homologue Alide2_1453 PF00672 HAMP domain Alide2_1453 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_1456 PF13533 Biotin-lipoyl like Alide2_1457 PF00873 AcrB/AcrD/AcrF family Alide2_1458 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide2_1458 PF05698 Bacterial trigger factor protein (TF) C-terminus Alide2_1458 PF05697 Bacterial trigger factor protein (TF) Alide2_1459 PF00574 Clp protease Alide2_1460 PF06689 ClpX C4-type zinc finger Alide2_1460 PF10431 C-terminal, D2-small domain, of ClpB protein Alide2_1460 PF07724 AAA domain (Cdc48 subfamily) Alide2_1461 PF05362 Lon protease (S16) C-terminal proteolytic domain Alide2_1461 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_1461 PF02190 ATP-dependent protease La (LON) substrate-binding domain Alide2_1462 PF17932 Tetracyclin repressor-like, C-terminal domain Alide2_1462 PF00440 Bacterial regulatory proteins, tetR family Alide2_1464 PF01575 MaoC like domain Alide2_1465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1465 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1466 PF02515 CoA-transferase family III Alide2_1467 PF02515 CoA-transferase family III Alide2_1468 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1470 PF00881 Nitroreductase family Alide2_1471 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1473 PF02653 Branched-chain amino acid transport system / permease component Alide2_1475 PF00005 ABC transporter Alide2_1475 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_1476 PF00005 ABC transporter Alide2_1477 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Alide2_1477 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_1480 PF03466 LysR substrate binding domain Alide2_1480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1481 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1483 PF02515 CoA-transferase family III Alide2_1486 PF02515 CoA-transferase family III Alide2_1487 PF02515 CoA-transferase family III Alide2_1488 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1489 PF00108 Thiolase, N-terminal domain Alide2_1489 PF02803 Thiolase, C-terminal domain Alide2_1493 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1493 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1493 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1495 PF00106 short chain dehydrogenase Alide2_1496 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1497 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1498 PF02515 CoA-transferase family III Alide2_1501 PF05199 GMC oxidoreductase Alide2_1501 PF00732 GMC oxidoreductase Alide2_1502 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1505 PF09339 IclR helix-turn-helix domain Alide2_1506 PF09339 IclR helix-turn-helix domain Alide2_1508 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1508 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1508 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1511 PF00108 Thiolase, N-terminal domain Alide2_1511 PF02803 Thiolase, C-terminal domain Alide2_1512 PF00501 AMP-binding enzyme Alide2_1512 PF16177 Acetyl-coenzyme A synthetase N-terminus Alide2_1512 PF13193 AMP-binding enzyme C-terminal domain Alide2_1514 PF02515 CoA-transferase family III Alide2_1516 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1516 PF03466 LysR substrate binding domain Alide2_1517 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1517 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1517 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1518 PF01012 Electron transfer flavoprotein domain Alide2_1519 PF00766 Electron transfer flavoprotein FAD-binding domain Alide2_1519 PF01012 Electron transfer flavoprotein domain Alide2_1521 PF02515 CoA-transferase family III Alide2_1522 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide2_1524 PF00005 ABC transporter Alide2_1525 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_1525 PF00005 ABC transporter Alide2_1526 PF11862 Domain of unknown function (DUF3382) Alide2_1526 PF02653 Branched-chain amino acid transport system / permease component Alide2_1527 PF02653 Branched-chain amino acid transport system / permease component Alide2_1528 PF13458 Periplasmic binding protein Alide2_1529 PF00107 Zinc-binding dehydrogenase Alide2_1529 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_1530 PF00171 Aldehyde dehydrogenase family Alide2_1532 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1534 PF00171 Aldehyde dehydrogenase family Alide2_1535 PF00171 Aldehyde dehydrogenase family Alide2_1536 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1538 PF13609 Gram-negative porin Alide2_1539 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1540 PF02653 Branched-chain amino acid transport system / permease component Alide2_1541 PF02653 Branched-chain amino acid transport system / permease component Alide2_1541 PF11862 Domain of unknown function (DUF3382) Alide2_1542 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_1542 PF00005 ABC transporter Alide2_1543 PF00005 ABC transporter Alide2_1545 PF00501 AMP-binding enzyme Alide2_1545 PF13193 AMP-binding enzyme C-terminal domain Alide2_1546 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1546 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1546 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1547 PF00106 short chain dehydrogenase Alide2_1548 PF09339 IclR helix-turn-helix domain Alide2_1552 PF13361 UvrD-like helicase C-terminal domain Alide2_1552 PF00580 UvrD/REP helicase N-terminal domain Alide2_1554 PF01527 Transposase Alide2_1556 PF05598 Transposase domain (DUF772) Alide2_1556 PF01609 Transposase DDE domain Alide2_1557 PF01609 Transposase DDE domain Alide2_1557 PF05598 Transposase domain (DUF772) Alide2_1563 PF03743 Bacterial conjugation TrbI-like protein Alide2_1564 PF03524 Conjugal transfer protein Alide2_1569 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Alide2_1571 PF04956 TrbC/VIRB2 family Alide2_1572 PF00437 Type II/IV secretion system protein Alide2_1574 PF02534 Type IV secretory system Conjugative DNA transfer Alide2_1576 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1576 PF03466 LysR substrate binding domain Alide2_1577 PF01494 FAD binding domain Alide2_1578 PF02321 Outer membrane efflux protein Alide2_1581 PF00005 ABC transporter Alide2_1582 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_1583 PF00440 Bacterial regulatory proteins, tetR family Alide2_1587 PF10502 Signal peptidase, peptidase S26 Alide2_1590 PF13614 AAA domain Alide2_1596 PF05284 Protein of unknown function (DUF736) Alide2_1597 PF01022 Bacterial regulatory protein, arsR family Alide2_1600 PF01758 Sodium Bile acid symporter family Alide2_1601 PF03960 ArsC family Alide2_1602 PF03551 Transcriptional regulator PadR-like family Alide2_1605 PF17762 HTH domain found in ParB protein Alide2_1605 PF02195 ParB-like nuclease domain Alide2_1606 PF06067 Domain of unknown function (DUF932) Alide2_1609 PF04002 RadC-like JAB domain Alide2_1617 PF00145 C-5 cytosine-specific DNA methylase Alide2_1617 PF01381 Helix-turn-helix Alide2_1621 PF08459 UvrC Helix-hairpin-helix N-terminal Alide2_1621 PF01541 GIY-YIG catalytic domain Alide2_1622 PF01066 CDP-alcohol phosphatidyltransferase Alide2_1623 PF00216 Bacterial DNA-binding protein Alide2_1626 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1627 PF14535 AMP-binding enzyme C-terminal domain Alide2_1627 PF00501 AMP-binding enzyme Alide2_1628 PF01039 Carboxyl transferase domain Alide2_1629 PF00364 Biotin-requiring enzyme Alide2_1629 PF00289 Biotin carboxylase, N-terminal domain Alide2_1629 PF02785 Biotin carboxylase C-terminal domain Alide2_1629 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_1630 PF00682 HMGL-like Alide2_1631 PF13193 AMP-binding enzyme C-terminal domain Alide2_1631 PF00501 AMP-binding enzyme Alide2_1633 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1635 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_1636 PF09297 NADH pyrophosphatase zinc ribbon domain Alide2_1636 PF00293 NUDIX domain Alide2_1636 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Alide2_1637 PF01206 Sulfurtransferase TusA Alide2_1638 PF00483 Nucleotidyl transferase Alide2_1639 PF10458 Valyl tRNA synthetase tRNA binding arm Alide2_1639 PF00133 tRNA synthetases class I (I, L, M and V) Alide2_1639 PF08264 Anticodon-binding domain of tRNA Alide2_1644 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide2_1648 PF03900 Porphobilinogen deaminase, C-terminal domain Alide2_1648 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Alide2_1649 PF00311 Phosphoenolpyruvate carboxylase Alide2_1650 PF05280 Flagellar transcriptional activator (FlhC) Alide2_1651 PF05247 Flagellar transcriptional activator (FlhD) Alide2_1652 PF00210 Ferritin-like domain Alide2_1653 PF10417 C-terminal domain of 1-Cys peroxiredoxin Alide2_1653 PF00578 AhpC/TSA family Alide2_1654 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_1654 PF13192 Thioredoxin domain Alide2_1655 PF06628 Catalase-related immune-responsive Alide2_1655 PF00199 Catalase Alide2_1660 PF00873 AcrB/AcrD/AcrF family Alide2_1661 PF03618 Kinase/pyrophosphorylase Alide2_1662 PF00391 PEP-utilising enzyme, mobile domain Alide2_1662 PF02896 PEP-utilising enzyme, TIM barrel domain Alide2_1662 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Alide2_1664 PF00474 Sodium:solute symporter family Alide2_1666 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1666 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1666 PF12806 Acetyl-CoA dehydrogenase C-terminal like Alide2_1666 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1669 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1669 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1669 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1670 PF02515 CoA-transferase family III Alide2_1671 PF00501 AMP-binding enzyme Alide2_1671 PF13193 AMP-binding enzyme C-terminal domain Alide2_1672 PF02803 Thiolase, C-terminal domain Alide2_1672 PF00108 Thiolase, N-terminal domain Alide2_1673 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1674 PF00106 short chain dehydrogenase Alide2_1676 PF01132 Elongation factor P (EF-P) OB domain Alide2_1676 PF09285 Elongation factor P, C-terminal Alide2_1676 PF08207 Elongation factor P (EF-P) KOW-like domain Alide2_1678 PF03466 LysR substrate binding domain Alide2_1678 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1679 PF02515 CoA-transferase family III Alide2_1680 PF00682 HMGL-like Alide2_1681 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1682 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1683 PF03466 LysR substrate binding domain Alide2_1684 PF02515 CoA-transferase family III Alide2_1687 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_1688 PF00005 ABC transporter Alide2_1689 PF00392 Bacterial regulatory proteins, gntR family Alide2_1689 PF07702 UTRA domain Alide2_1690 PF00221 Aromatic amino acid lyase Alide2_1691 PF07702 UTRA domain Alide2_1691 PF00392 Bacterial regulatory proteins, gntR family Alide2_1692 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Alide2_1693 PF17392 Urocanase C-terminal domain Alide2_1693 PF17391 Urocanase N-terminal domain Alide2_1693 PF01175 Urocanase Rossmann-like domain Alide2_1696 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_1697 PF00005 ABC transporter Alide2_1698 PF05962 HutD Alide2_1699 PF01979 Amidohydrolase family Alide2_1702 PF01177 Asp/Glu/Hydantoin racemase Alide2_1704 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide2_1705 PF00171 Aldehyde dehydrogenase family Alide2_1706 PF08666 SAF domain Alide2_1706 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Alide2_1707 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1708 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1708 PF03466 LysR substrate binding domain Alide2_1709 PF01734 Patatin-like phospholipase Alide2_1710 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide2_1711 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1711 PF03466 LysR substrate binding domain Alide2_1715 PF00216 Bacterial DNA-binding protein Alide2_1717 PF03466 LysR substrate binding domain Alide2_1717 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1719 PF00106 short chain dehydrogenase Alide2_1721 PF00561 alpha/beta hydrolase fold Alide2_1721 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Alide2_1722 PF00440 Bacterial regulatory proteins, tetR family Alide2_1724 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_1725 PF00005 ABC transporter Alide2_1728 PF02321 Outer membrane efflux protein Alide2_1730 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Alide2_1730 PF10996 Beta-Casp domain Alide2_1730 PF00753 Metallo-beta-lactamase superfamily Alide2_1731 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Alide2_1731 PF11892 Domain of unknown function (DUF3412) Alide2_1731 PF03641 Possible lysine decarboxylase Alide2_1735 PF03466 LysR substrate binding domain Alide2_1735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1738 PF13614 AAA domain Alide2_1747 PF01131 DNA topoisomerase Alide2_1747 PF01751 Toprim domain Alide2_1761 PF09828 Chromate resistance exported protein Alide2_1762 PF02417 Chromate transporter Alide2_1763 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Alide2_1764 PF13276 HTH-like domain Alide2_1764 PF13333 Integrase core domain Alide2_1764 PF00665 Integrase core domain Alide2_1765 PF01527 Transposase Alide2_1767 PF09828 Chromate resistance exported protein Alide2_1769 PF00072 Response regulator receiver domain Alide2_1769 PF00486 Transcriptional regulatory protein, C terminal Alide2_1770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_1770 PF00672 HAMP domain Alide2_1770 PF00512 His Kinase A (phospho-acceptor) domain Alide2_1773 PF00005 ABC transporter Alide2_1787 PF01555 DNA methylase Alide2_1790 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_1791 PF00271 Helicase conserved C-terminal domain Alide2_1791 PF00176 SNF2 family N-terminal domain Alide2_1792 PF12728 Helix-turn-helix domain Alide2_1803 PF04002 RadC-like JAB domain Alide2_1819 PF01252 Signal peptidase (SPase) II Alide2_1820 PF00403 Heavy-metal-associated domain Alide2_1821 PF13411 MerR HTH family regulatory protein Alide2_1822 PF14659 Phage integrase, N-terminal SAM-like domain Alide2_1822 PF13356 Arm DNA-binding domain Alide2_1822 PF00589 Phage integrase family Alide2_1824 PF11855 Protein of unknown function (DUF3375) Alide2_1830 PF01527 Transposase Alide2_1831 PF13276 HTH-like domain Alide2_1831 PF00665 Integrase core domain Alide2_1831 PF13333 Integrase core domain Alide2_1832 PF00440 Bacterial regulatory proteins, tetR family Alide2_1832 PF17932 Tetracyclin repressor-like, C-terminal domain Alide2_1833 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1833 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1833 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1834 PF02515 CoA-transferase family III Alide2_1835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1835 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1836 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1836 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1836 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1839 PF09339 IclR helix-turn-helix domain Alide2_1839 PF01614 Bacterial transcriptional regulator Alide2_1841 PF00583 Acetyltransferase (GNAT) family Alide2_1841 PF13380 CoA binding domain Alide2_1841 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide2_1843 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1844 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1844 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1844 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1845 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1847 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1848 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1849 PF13452 N-terminal half of MaoC dehydratase Alide2_1853 PF01012 Electron transfer flavoprotein domain Alide2_1854 PF00766 Electron transfer flavoprotein FAD-binding domain Alide2_1854 PF01012 Electron transfer flavoprotein domain Alide2_1855 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1856 PF03060 Nitronate monooxygenase Alide2_1857 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1858 PF00561 alpha/beta hydrolase fold Alide2_1859 PF02515 CoA-transferase family III Alide2_1860 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Alide2_1860 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Alide2_1862 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1863 PF02515 CoA-transferase family III Alide2_1864 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_1864 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_1864 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_1865 PF01575 MaoC like domain Alide2_1867 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_1868 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1869 PF00378 Enoyl-CoA hydratase/isomerase Alide2_1870 PF09339 IclR helix-turn-helix domain Alide2_1871 PF09339 IclR helix-turn-helix domain Alide2_1871 PF01614 Bacterial transcriptional regulator Alide2_1872 PF00289 Biotin carboxylase, N-terminal domain Alide2_1872 PF00364 Biotin-requiring enzyme Alide2_1872 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_1872 PF02785 Biotin carboxylase C-terminal domain Alide2_1873 PF01039 Carboxyl transferase domain Alide2_1879 PF01695 IstB-like ATP binding protein Alide2_1880 PF00665 Integrase core domain Alide2_1884 PF01131 DNA topoisomerase Alide2_1884 PF01751 Toprim domain Alide2_1885 PF03960 ArsC family Alide2_1886 PF01758 Sodium Bile acid symporter family Alide2_1888 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide2_1889 PF01022 Bacterial regulatory protein, arsR family Alide2_1901 PF06067 Domain of unknown function (DUF932) Alide2_1924 PF00440 Bacterial regulatory proteins, tetR family Alide2_1925 PF13533 Biotin-lipoyl like Alide2_1927 PF00005 ABC transporter Alide2_1936 PF00005 ABC transporter Alide2_1936 PF00664 ABC transporter transmembrane region Alide2_1937 PF00005 ABC transporter Alide2_1937 PF00664 ABC transporter transmembrane region Alide2_1941 PF09828 Chromate resistance exported protein Alide2_1942 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Alide2_1943 PF02417 Chromate transporter Alide2_1944 PF09828 Chromate resistance exported protein Alide2_1945 PF02796 Helix-turn-helix domain of resolvase Alide2_1945 PF00239 Resolvase, N terminal domain Alide2_1946 PF11809 Domain of unknown function (DUF3330) Alide2_1946 PF00563 EAL domain Alide2_1947 PF05052 MerE protein Alide2_1948 PF13411 MerR HTH family regulatory protein Alide2_1949 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide2_1949 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_1949 PF00403 Heavy-metal-associated domain Alide2_1950 PF03203 MerC mercury resistance protein Alide2_1951 PF00403 Heavy-metal-associated domain Alide2_1952 PF02411 MerT mercuric transport protein Alide2_1953 PF09278 MerR, DNA binding Alide2_1953 PF00376 MerR family regulatory protein Alide2_1962 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system Alide2_1967 PF00589 Phage integrase family Alide2_1967 PF13356 Arm DNA-binding domain Alide2_1967 PF14659 Phage integrase, N-terminal SAM-like domain Alide2_1968 PF02082 Transcriptional regulator Alide2_1970 PF02666 Phosphatidylserine decarboxylase Alide2_1971 PF00571 CBS domain Alide2_1971 PF00005 ABC transporter Alide2_1972 PF01176 Translation initiation factor 1A / IF-1 Alide2_1973 PF17158 Membrane-associated sensor, integral membrane domain Alide2_1973 PF00990 Diguanylate cyclase, GGDEF domain Alide2_1975 PF00216 Bacterial DNA-binding protein Alide2_1976 PF00575 S1 RNA binding domain Alide2_1977 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Alide2_1978 PF02153 Prephenate dehydrogenase Alide2_1979 PF01842 ACT domain Alide2_1979 PF01817 Chorismate mutase type II Alide2_1979 PF00800 Prephenate dehydratase Alide2_1980 PF00266 Aminotransferase class-V Alide2_1981 PF03989 DNA gyrase C-terminal domain, beta-propeller Alide2_1981 PF00521 DNA gyrase/topoisomerase IV, subunit A Alide2_1982 PF00691 OmpA family Alide2_1984 PF13419 Haloacid dehalogenase-like hydrolase Alide2_1985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_1985 PF03466 LysR substrate binding domain Alide2_1986 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide2_1986 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_1987 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_1989 PF00005 ABC transporter Alide2_1993 PF00239 Resolvase, N terminal domain Alide2_1993 PF02796 Helix-turn-helix domain of resolvase Alide2_2012 PF01555 DNA methylase Alide2_2013 PF02195 ParB-like nuclease domain Alide2_2023 PF01343 Peptidase family S49 Alide2_2049 PF18766 SWI2/SNF2 ATPase Alide2_2049 PF11867 Domain of unknown function (DUF3387) Alide2_2049 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Alide2_2051 PF02384 N-6 DNA Methylase Alide2_2051 PF12161 HsdM N-terminal domain Alide2_2055 PF13180 PDZ domain Alide2_2056 PF01435 Peptidase family M48 Alide2_2058 PF00085 Thioredoxin Alide2_2059 PF17862 AAA+ lid domain Alide2_2059 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_2059 PF01434 Peptidase family M41 Alide2_2060 PF13091 PLD-like domain Alide2_2061 PF17871 AAA lid domain Alide2_2061 PF10431 C-terminal, D2-small domain, of ClpB protein Alide2_2061 PF07724 AAA domain (Cdc48 subfamily) Alide2_2061 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_2061 PF02861 Clp amino terminal domain, pathogenicity island component Alide2_2062 PF00011 Hsp20/alpha crystallin family Alide2_2063 PF12728 Helix-turn-helix domain Alide2_2066 PF00717 Peptidase S24-like Alide2_2067 PF00817 impB/mucB/samB family Alide2_2067 PF11799 impB/mucB/samB family C-terminal domain Alide2_2067 PF13438 Domain of unknown function (DUF4113) Alide2_2070 PF00239 Resolvase, N terminal domain Alide2_2070 PF02796 Helix-turn-helix domain of resolvase Alide2_2076 PF01527 Transposase Alide2_2077 PF13276 HTH-like domain Alide2_2077 PF13333 Integrase core domain Alide2_2077 PF00665 Integrase core domain Alide2_2078 PF04960 Glutaminase Alide2_2079 PF01546 Peptidase family M20/M25/M40 Alide2_2079 PF07687 Peptidase dimerisation domain Alide2_2080 PF07690 Major Facilitator Superfamily Alide2_2081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2081 PF03466 LysR substrate binding domain Alide2_2088 PF00107 Zinc-binding dehydrogenase Alide2_2088 PF16884 N-terminal domain of oxidoreductase Alide2_2091 PF07690 Major Facilitator Superfamily Alide2_2092 PF03441 FAD binding domain of DNA photolyase Alide2_2092 PF00875 DNA photolyase Alide2_2094 PF08267 Cobalamin-independent synthase, N-terminal domain Alide2_2094 PF01717 Cobalamin-independent synthase, Catalytic domain Alide2_2095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2095 PF03466 LysR substrate binding domain Alide2_2101 PF04303 PrpF protein Alide2_2102 PF00694 Aconitase C-terminal domain Alide2_2102 PF00330 Aconitase family (aconitate hydratase) Alide2_2103 PF00285 Citrate synthase, C-terminal domain Alide2_2105 PF01381 Helix-turn-helix Alide2_2105 PF06114 IrrE N-terminal-like domain Alide2_2105 PF09856 Predicted transcriptional regulator (DUF2083) Alide2_2107 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide2_2109 PF01479 S4 domain Alide2_2110 PF08521 Two-component sensor kinase N-terminal Alide2_2110 PF00512 His Kinase A (phospho-acceptor) domain Alide2_2110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_2111 PF00486 Transcriptional regulatory protein, C terminal Alide2_2111 PF00072 Response regulator receiver domain Alide2_2112 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2114 PF01970 Tripartite tricarboxylate transporter TctA family Alide2_2115 PF10605 3HB-oligomer hydrolase (3HBOH) Alide2_2120 PF00762 Ferrochelatase Alide2_2121 PF13419 Haloacid dehalogenase-like hydrolase Alide2_2122 PF00689 Cation transporting ATPase, C-terminus Alide2_2122 PF00690 Cation transporter/ATPase, N-terminus Alide2_2124 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide2_2126 PF01264 Chorismate synthase Alide2_2127 PF03477 ATP cone domain Alide2_2128 PF00464 Serine hydroxymethyltransferase Alide2_2129 PF01464 Transglycosylase SLT domain Alide2_2129 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Alide2_2132 PF08461 Ribonuclease R winged-helix domain Alide2_2132 PF00575 S1 RNA binding domain Alide2_2132 PF08206 Ribonuclease B OB domain Alide2_2132 PF17876 Cold shock domain Alide2_2132 PF00773 RNB domain Alide2_2135 PF00034 Cytochrome c Alide2_2135 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alide2_2135 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_2136 PF00085 Thioredoxin Alide2_2137 PF02576 RimP N-terminal domain Alide2_2138 PF08529 NusA N-terminal domain Alide2_2138 PF13184 NusA-like KH domain Alide2_2138 PF00575 S1 RNA binding domain Alide2_2139 PF08364 Bacterial translation initiation factor IF-2 associated region Alide2_2139 PF00009 Elongation factor Tu GTP binding domain Alide2_2139 PF11987 Translation-initiation factor 2 Alide2_2139 PF04760 Translation initiation factor IF-2, N-terminal region Alide2_2140 PF02033 Ribosome-binding factor A Alide2_2141 PF16198 tRNA pseudouridylate synthase B C-terminal domain Alide2_2141 PF01509 TruB family pseudouridylate synthase (N terminal domain) Alide2_2144 PF00378 Enoyl-CoA hydratase/isomerase Alide2_2146 PF04542 Sigma-70 region 2 Alide2_2146 PF08281 Sigma-70, region 4 Alide2_2148 PF01668 SmpB protein Alide2_2149 PF03364 Polyketide cyclase / dehydrase and lipid transport Alide2_2150 PF03658 RnfH family Ubiquitin Alide2_2152 PF00571 CBS domain Alide2_2152 PF00478 IMP dehydrogenase / GMP reductase domain Alide2_2153 PF00958 GMP synthase C terminal domain Alide2_2153 PF02540 NAD synthase Alide2_2153 PF00117 Glutamine amidotransferase class-I Alide2_2154 PF00665 Integrase core domain Alide2_2155 PF01695 IstB-like ATP binding protein Alide2_2156 PF00589 Phage integrase family Alide2_2160 PF06067 Domain of unknown function (DUF932) Alide2_2161 PF02195 ParB-like nuclease domain Alide2_2164 PF00403 Heavy-metal-associated domain Alide2_2166 PF09278 MerR, DNA binding Alide2_2166 PF00376 MerR family regulatory protein Alide2_2169 PF05284 Protein of unknown function (DUF736) Alide2_2172 PF01527 Transposase Alide2_2173 PF13333 Integrase core domain Alide2_2173 PF00665 Integrase core domain Alide2_2173 PF13276 HTH-like domain Alide2_2177 PF13614 AAA domain Alide2_2180 PF10502 Signal peptidase, peptidase S26 Alide2_2182 PF07732 Multicopper oxidase Alide2_2182 PF07731 Multicopper oxidase Alide2_2185 PF00512 His Kinase A (phospho-acceptor) domain Alide2_2185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_2185 PF00672 HAMP domain Alide2_2186 PF00486 Transcriptional regulatory protein, C terminal Alide2_2186 PF00072 Response regulator receiver domain Alide2_2187 PF07732 Multicopper oxidase Alide2_2187 PF07731 Multicopper oxidase Alide2_2187 PF00394 Multicopper oxidase Alide2_2188 PF05275 Copper resistance protein B precursor (CopB) Alide2_2196 PF11339 Protein of unknown function (DUF3141) Alide2_2197 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_2197 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Alide2_2202 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_2203 PF00873 AcrB/AcrD/AcrF family Alide2_2205 PF01695 IstB-like ATP binding protein Alide2_2206 PF00665 Integrase core domain Alide2_2208 PF00589 Phage integrase family Alide2_2208 PF13356 Arm DNA-binding domain Alide2_2209 PF00285 Citrate synthase, C-terminal domain Alide2_2210 PF03937 Flavinator of succinate dehydrogenase Alide2_2211 PF13085 2Fe-2S iron-sulfur cluster binding domain Alide2_2212 PF02910 Fumarate reductase flavoprotein C-term Alide2_2212 PF00890 FAD binding domain Alide2_2213 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Alide2_2214 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Alide2_2215 PF07702 UTRA domain Alide2_2215 PF00392 Bacterial regulatory proteins, gntR family Alide2_2216 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Alide2_2216 PF00056 lactate/malate dehydrogenase, NAD binding domain Alide2_2219 PF00330 Aconitase family (aconitate hydratase) Alide2_2219 PF06434 Aconitate hydratase 2 N-terminus Alide2_2219 PF11791 Aconitate B N-terminal domain Alide2_2220 PF03466 LysR substrate binding domain Alide2_2220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2221 PF18158 Adaptive response protein AidB N-terminal domain Alide2_2221 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_2221 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_2222 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2223 PF02515 CoA-transferase family III Alide2_2224 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide2_2224 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_2225 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_2225 PF01799 [2Fe-2S] binding domain Alide2_2226 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alide2_2226 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide2_2227 PF03450 CO dehydrogenase flavoprotein C-terminal domain Alide2_2227 PF00941 FAD binding domain in molybdopterin dehydrogenase Alide2_2228 PF05362 Lon protease (S16) C-terminal proteolytic domain Alide2_2228 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_2228 PF02190 ATP-dependent protease La (LON) substrate-binding domain Alide2_2231 PF13478 XdhC Rossmann domain Alide2_2231 PF02625 XdhC and CoxI family Alide2_2232 PF00132 Bacterial transferase hexapeptide (six repeats) Alide2_2232 PF12804 MobA-like NTP transferase domain Alide2_2237 PF00535 Glycosyl transferase family 2 Alide2_2242 PF05598 Transposase domain (DUF772) Alide2_2243 PF00072 Response regulator receiver domain Alide2_2244 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_2244 PF00512 His Kinase A (phospho-acceptor) domain Alide2_2246 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Alide2_2247 PF00510 Cytochrome c oxidase subunit III Alide2_2248 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide2_2249 PF06481 COX Aromatic Rich Motif Alide2_2249 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Alide2_2250 PF07690 Major Facilitator Superfamily Alide2_2250 PF00083 Sugar (and other) transporter Alide2_2252 PF02472 Biopolymer transport protein ExbD/TolR Alide2_2253 PF01618 MotA/TolQ/ExbB proton channel family Alide2_2254 PF03061 Thioesterase superfamily Alide2_2255 PF00155 Aminotransferase class I and II Alide2_2256 PF01029 NusB family Alide2_2257 PF00885 6,7-dimethyl-8-ribityllumazine synthase Alide2_2258 PF00925 GTP cyclohydrolase II Alide2_2258 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Alide2_2261 PF00106 short chain dehydrogenase Alide2_2262 PF04262 Glutamate-cysteine ligase Alide2_2263 PF12805 FUSC-like inner membrane protein yccS Alide2_2265 PF01042 Endoribonuclease L-PSP Alide2_2266 PF04324 BFD-like [2Fe-2S] binding domain Alide2_2266 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_2268 PF01266 FAD dependent oxidoreductase Alide2_2269 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2270 PF03466 LysR substrate binding domain Alide2_2270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2271 PF01926 50S ribosome-binding GTPase Alide2_2273 PF00849 RNA pseudouridylate synthase Alide2_2277 PF00565 Staphylococcal nuclease homologue Alide2_2278 PF00892 EamA-like transporter family Alide2_2279 PF00849 RNA pseudouridylate synthase Alide2_2281 PF10415 Fumarase C C-terminus Alide2_2281 PF00206 Lyase Alide2_2284 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alide2_2284 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Alide2_2286 PF01220 Dehydroquinase class II Alide2_2288 PF00472 RF-1 domain Alide2_2289 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Alide2_2290 PF02230 Phospholipase/Carboxylesterase Alide2_2292 PF01037 Lrp/AsnC ligand binding domain Alide2_2293 PF00456 Transketolase, thiamine diphosphate binding domain Alide2_2293 PF17831 Pyruvate dehydrogenase E1 component middle domain Alide2_2294 PF01425 Amidase Alide2_2295 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2296 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2296 PF03466 LysR substrate binding domain Alide2_2297 PF07729 FCD domain Alide2_2297 PF00392 Bacterial regulatory proteins, gntR family Alide2_2298 PF07690 Major Facilitator Superfamily Alide2_2299 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide2_2299 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide2_2300 PF01370 NAD dependent epimerase/dehydratase family Alide2_2301 PF17042 Nucleotide-binding C-terminal domain Alide2_2301 PF07005 Sugar-binding N-terminal domain Alide2_2302 PF00596 Class II Aldolase and Adducin N-terminal domain Alide2_2303 PF01261 Xylose isomerase-like TIM barrel Alide2_2304 PF06167 Glucose-regulated metallo-peptidase M90 Alide2_2305 PF00149 Calcineurin-like phosphoesterase Alide2_2306 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alide2_2307 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alide2_2310 PF01406 tRNA synthetases class I (C) catalytic domain Alide2_2310 PF09190 DALR domain Alide2_2312 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Alide2_2313 PF09179 TilS substrate binding domain Alide2_2313 PF01171 PP-loop family Alide2_2314 PF01842 ACT domain Alide2_2314 PF13840 ACT domain Alide2_2314 PF00696 Amino acid kinase family Alide2_2315 PF00654 Voltage gated chloride channel Alide2_2316 PF00440 Bacterial regulatory proteins, tetR family Alide2_2319 PF00005 ABC transporter Alide2_2320 PF13406 Transglycosylase SLT domain Alide2_2321 PF08411 Exonuclease C-terminal Alide2_2321 PF00929 Exonuclease Alide2_2322 PF02146 Sir2 family Alide2_2323 PF01594 AI-2E family transporter Alide2_2324 PF13302 Acetyltransferase (GNAT) domain Alide2_2326 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_2327 PF01709 Transcriptional regulator Alide2_2329 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Alide2_2329 PF13746 4Fe-4S dicluster domain Alide2_2329 PF12801 4Fe-4S binding domain Alide2_2330 PF01654 Cytochrome bd terminal oxidase subunit I Alide2_2331 PF02322 Cytochrome bd terminal oxidase subunit II Alide2_2333 PF04172 LrgB-like family Alide2_2335 PF00155 Aminotransferase class I and II Alide2_2335 PF00392 Bacterial regulatory proteins, gntR family Alide2_2336 PF00043 Glutathione S-transferase, C-terminal domain Alide2_2336 PF02798 Glutathione S-transferase, N-terminal domain Alide2_2337 PF05872 Bacterial protein of unknown function (DUF853) Alide2_2338 PF01709 Transcriptional regulator Alide2_2339 PF02844 Phosphoribosylglycinamide synthetase, N domain Alide2_2339 PF02843 Phosphoribosylglycinamide synthetase, C domain Alide2_2339 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Alide2_2340 PF01218 Coproporphyrinogen III oxidase Alide2_2342 PF02590 Predicted SPOUT methyltransferase Alide2_2343 PF02545 Maf-like protein Alide2_2347 PF17805 AsnC-like ligand binding domain Alide2_2348 PF13404 AsnC-type helix-turn-helix domain Alide2_2348 PF17805 AsnC-like ligand binding domain Alide2_2350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_2351 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Alide2_2352 PF10414 Sirohaem synthase dimerisation region Alide2_2352 PF14824 Sirohaem biosynthesis protein central Alide2_2352 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide2_2353 PF00575 S1 RNA binding domain Alide2_2353 PF10150 Ribonuclease E/G family Alide2_2354 PF05230 MASE2 domain Alide2_2354 PF00990 Diguanylate cyclase, GGDEF domain Alide2_2355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2355 PF03466 LysR substrate binding domain Alide2_2356 PF00155 Aminotransferase class I and II Alide2_2357 PF03466 LysR substrate binding domain Alide2_2357 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2361 PF02789 Cytosol aminopeptidase family, N-terminal domain Alide2_2361 PF00883 Cytosol aminopeptidase family, catalytic domain Alide2_2364 PF13458 Periplasmic binding protein Alide2_2365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide2_2365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_2371 PF00582 Universal stress protein family Alide2_2372 PF01814 Hemerythrin HHE cation binding domain Alide2_2373 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2374 PF02803 Thiolase, C-terminal domain Alide2_2374 PF00108 Thiolase, N-terminal domain Alide2_2375 PF00106 short chain dehydrogenase Alide2_2376 PF00849 RNA pseudouridylate synthase Alide2_2377 PF08448 PAS fold Alide2_2377 PF00512 His Kinase A (phospho-acceptor) domain Alide2_2377 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_2377 PF00072 Response regulator receiver domain Alide2_2377 PF13188 PAS domain Alide2_2378 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide2_2378 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Alide2_2379 PF00196 Bacterial regulatory proteins, luxR family Alide2_2379 PF00072 Response regulator receiver domain Alide2_2382 PF08534 Redoxin Alide2_2387 PF08281 Sigma-70, region 4 Alide2_2387 PF04542 Sigma-70 region 2 Alide2_2389 PF05958 tRNA (Uracil-5-)-methyltransferase Alide2_2390 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_2391 PF01205 Uncharacterized protein family UPF0029 Alide2_2391 PF09186 Domain of unknown function (DUF1949) Alide2_2392 PF00127 Copper binding proteins, plastocyanin/azurin family Alide2_2393 PF08497 Radical SAM N-terminal Alide2_2393 PF04055 Radical SAM superfamily Alide2_2393 PF11842 Domain of unknown function (DUF3362) Alide2_2394 PF00155 Aminotransferase class I and II Alide2_2396 PF02082 Transcriptional regulator Alide2_2397 PF00266 Aminotransferase class-V Alide2_2398 PF01592 NifU-like N terminal domain Alide2_2399 PF01521 Iron-sulphur cluster biosynthesis Alide2_2400 PF07743 HSCB C-terminal oligomerisation domain Alide2_2401 PF00012 Hsp70 protein Alide2_2402 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_2403 PF00929 Exonuclease Alide2_2404 PF01266 FAD dependent oxidoreductase Alide2_2408 PF01180 Dihydroorotate dehydrogenase Alide2_2409 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Alide2_2411 PF01432 Peptidase family M3 Alide2_2412 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Alide2_2412 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Alide2_2413 PF00196 Bacterial regulatory proteins, luxR family Alide2_2413 PF00072 Response regulator receiver domain Alide2_2414 PF00512 His Kinase A (phospho-acceptor) domain Alide2_2414 PF00989 PAS fold Alide2_2414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_2415 PF17831 Pyruvate dehydrogenase E1 component middle domain Alide2_2415 PF00456 Transketolase, thiamine diphosphate binding domain Alide2_2416 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide2_2416 PF00364 Biotin-requiring enzyme Alide2_2416 PF02817 e3 binding domain Alide2_2417 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_2417 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide2_2420 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2422 PF03466 LysR substrate binding domain Alide2_2427 PF13005 zinc-finger binding domain of transposase IS66 Alide2_2427 PF03050 Transposase IS66 family Alide2_2427 PF13817 IS66 C-terminal element Alide2_2427 PF13007 Transposase C of IS166 homeodomain Alide2_2429 PF01527 Transposase Alide2_2431 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2434 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide2_2434 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide2_2438 PF00877 NlpC/P60 family Alide2_2439 PF00324 Amino acid permease Alide2_2440 PF07690 Major Facilitator Superfamily Alide2_2441 PF00563 EAL domain Alide2_2441 PF00990 Diguanylate cyclase, GGDEF domain Alide2_2441 PF03707 Bacterial signalling protein N terminal repeat Alide2_2442 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Alide2_2444 PF02463 RecF/RecN/SMC N terminal domain Alide2_2444 PF06470 SMC proteins Flexible Hinge Domain Alide2_2446 PF03120 NAD-dependent DNA ligase OB-fold domain Alide2_2446 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Alide2_2446 PF12826 Helix-hairpin-helix motif Alide2_2446 PF01653 NAD-dependent DNA ligase adenylation domain Alide2_2446 PF00533 BRCA1 C Terminus (BRCT) domain Alide2_2447 PF01734 Patatin-like phospholipase Alide2_2448 PF17092 Penicillin-binding protein OB-like domain Alide2_2448 PF00912 Transglycosylase Alide2_2448 PF00905 Penicillin binding protein transpeptidase domain Alide2_2449 PF07690 Major Facilitator Superfamily Alide2_2451 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide2_2452 PF13417 Glutathione S-transferase, N-terminal domain Alide2_2455 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Alide2_2456 PF02803 Thiolase, C-terminal domain Alide2_2456 PF00108 Thiolase, N-terminal domain Alide2_2457 PF00106 short chain dehydrogenase Alide2_2458 PF12848 ABC transporter Alide2_2458 PF00005 ABC transporter Alide2_2459 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_2460 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_2460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_2461 PF13193 AMP-binding enzyme C-terminal domain Alide2_2461 PF00501 AMP-binding enzyme Alide2_2462 PF03466 LysR substrate binding domain Alide2_2462 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2463 PF05175 Methyltransferase small domain Alide2_2464 PF07687 Peptidase dimerisation domain Alide2_2464 PF01546 Peptidase family M20/M25/M40 Alide2_2465 PF00437 Type II/IV secretion system protein Alide2_2466 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Alide2_2466 PF14602 Hexapeptide repeat of succinyl-transferase Alide2_2467 PF00155 Aminotransferase class I and II Alide2_2468 PF04060 Putative Fe-S cluster Alide2_2471 PF01207 Dihydrouridine synthase (Dus) Alide2_2473 PF00440 Bacterial regulatory proteins, tetR family Alide2_2475 PF00501 AMP-binding enzyme Alide2_2476 PF00392 Bacterial regulatory proteins, gntR family Alide2_2476 PF07729 FCD domain Alide2_2477 PF00682 HMGL-like Alide2_2478 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2479 PF02515 CoA-transferase family III Alide2_2480 PF09856 Predicted transcriptional regulator (DUF2083) Alide2_2480 PF06114 IrrE N-terminal-like domain Alide2_2480 PF01381 Helix-turn-helix Alide2_2483 PF01039 Carboxyl transferase domain Alide2_2484 PF02785 Biotin carboxylase C-terminal domain Alide2_2484 PF00289 Biotin carboxylase, N-terminal domain Alide2_2484 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_2486 PF04055 Radical SAM superfamily Alide2_2486 PF06968 Biotin and Thiamin Synthesis associated domain Alide2_2487 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2488 PF00072 Response regulator receiver domain Alide2_2488 PF00486 Transcriptional regulatory protein, C terminal Alide2_2489 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_2489 PF00512 His Kinase A (phospho-acceptor) domain Alide2_2489 PF08521 Two-component sensor kinase N-terminal Alide2_2492 PF00581 Rhodanese-like domain Alide2_2495 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_2496 PF02321 Outer membrane efflux protein Alide2_2497 PF00873 AcrB/AcrD/AcrF family Alide2_2499 PF01022 Bacterial regulatory protein, arsR family Alide2_2501 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide2_2503 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2504 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2505 PF00356 Bacterial regulatory proteins, lacI family Alide2_2511 PF00884 Sulfatase Alide2_2511 PF08019 Phosphoethanolamine transferase EptA/EptB Alide2_2513 PF00486 Transcriptional regulatory protein, C terminal Alide2_2513 PF00072 Response regulator receiver domain Alide2_2514 PF00512 His Kinase A (phospho-acceptor) domain Alide2_2514 PF08521 Two-component sensor kinase N-terminal Alide2_2514 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_2515 PF00378 Enoyl-CoA hydratase/isomerase Alide2_2516 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2517 PF00107 Zinc-binding dehydrogenase Alide2_2517 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_2518 PF02515 CoA-transferase family III Alide2_2519 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_2519 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_2519 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_2521 PF02515 CoA-transferase family III Alide2_2525 PF02653 Branched-chain amino acid transport system / permease component Alide2_2526 PF00005 ABC transporter Alide2_2527 PF01590 GAF domain Alide2_2527 PF00158 Sigma-54 interaction domain Alide2_2527 PF02954 Bacterial regulatory protein, Fis family Alide2_2528 PF00364 Biotin-requiring enzyme Alide2_2528 PF00561 alpha/beta hydrolase fold Alide2_2529 PF05199 GMC oxidoreductase Alide2_2529 PF00732 GMC oxidoreductase Alide2_2531 PF03099 Biotin/lipoate A/B protein ligase family Alide2_2532 PF02817 e3 binding domain Alide2_2532 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide2_2532 PF00364 Biotin-requiring enzyme Alide2_2533 PF02780 Transketolase, C-terminal domain Alide2_2533 PF02779 Transketolase, pyrimidine binding domain Alide2_2533 PF00364 Biotin-requiring enzyme Alide2_2534 PF02779 Transketolase, pyrimidine binding domain Alide2_2534 PF02780 Transketolase, C-terminal domain Alide2_2535 PF00676 Dehydrogenase E1 component Alide2_2536 PF01037 Lrp/AsnC ligand binding domain Alide2_2537 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide2_2539 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide2_2540 PF12706 Beta-lactamase superfamily domain Alide2_2540 PF00753 Metallo-beta-lactamase superfamily Alide2_2541 PF08669 Glycine cleavage T-protein C-terminal barrel domain Alide2_2541 PF01571 Aminomethyltransferase folate-binding domain Alide2_2542 PF01597 Glycine cleavage H-protein Alide2_2543 PF02347 Glycine cleavage system P-protein Alide2_2544 PF02583 Metal-sensitive transcriptional repressor Alide2_2545 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_2545 PF00107 Zinc-binding dehydrogenase Alide2_2546 PF00756 Putative esterase Alide2_2549 PF04055 Radical SAM superfamily Alide2_2550 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide2_2550 PF14760 Rnk N-terminus Alide2_2553 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_2553 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_2553 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_2553 PF12806 Acetyl-CoA dehydrogenase C-terminal like Alide2_2554 PF00766 Electron transfer flavoprotein FAD-binding domain Alide2_2554 PF01012 Electron transfer flavoprotein domain Alide2_2555 PF01012 Electron transfer flavoprotein domain Alide2_2556 PF00378 Enoyl-CoA hydratase/isomerase Alide2_2557 PF00850 Histone deacetylase domain Alide2_2558 PF07726 ATPase family associated with various cellular activities (AAA) Alide2_2558 PF17863 AAA lid domain Alide2_2560 PF01841 Transglutaminase-like superfamily Alide2_2560 PF11992 Domain of unknown function (DUF3488) Alide2_2560 PF13559 Domain of unknown function (DUF4129) Alide2_2561 PF13406 Transglycosylase SLT domain Alide2_2562 PF02780 Transketolase, C-terminal domain Alide2_2562 PF02779 Transketolase, pyrimidine binding domain Alide2_2563 PF00456 Transketolase, thiamine diphosphate binding domain Alide2_2564 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide2_2566 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide2_2566 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Alide2_2568 PF03466 LysR substrate binding domain Alide2_2568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2569 PF00456 Transketolase, thiamine diphosphate binding domain Alide2_2569 PF02780 Transketolase, C-terminal domain Alide2_2569 PF02779 Transketolase, pyrimidine binding domain Alide2_2570 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide2_2570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_2571 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2571 PF03466 LysR substrate binding domain Alide2_2572 PF03601 Conserved hypothetical protein 698 Alide2_2573 PF13458 Periplasmic binding protein Alide2_2575 PF12704 MacB-like periplasmic core domain Alide2_2575 PF00005 ABC transporter Alide2_2575 PF02687 FtsX-like permease family Alide2_2576 PF12704 MacB-like periplasmic core domain Alide2_2576 PF02687 FtsX-like permease family Alide2_2576 PF00005 ABC transporter Alide2_2577 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_2578 PF02321 Outer membrane efflux protein Alide2_2579 PF00814 Glycoprotease family Alide2_2580 PF00478 IMP dehydrogenase / GMP reductase domain Alide2_2580 PF00571 CBS domain Alide2_2582 PF00529 HlyD membrane-fusion protein of T1SS Alide2_2582 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_2583 PF00873 AcrB/AcrD/AcrF family Alide2_2584 PF02321 Outer membrane efflux protein Alide2_2585 PF04324 BFD-like [2Fe-2S] binding domain Alide2_2585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Alide2_2585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Alide2_2585 PF18267 Rubredoxin NAD+ reductase C-terminal domain Alide2_2585 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_2586 PF00355 Rieske [2Fe-2S] domain Alide2_2587 PF01568 Molydopterin dinucleotide binding domain Alide2_2587 PF04324 BFD-like [2Fe-2S] binding domain Alide2_2587 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Alide2_2587 PF00384 Molybdopterin oxidoreductase Alide2_2588 PF07690 Major Facilitator Superfamily Alide2_2590 PF00591 Glycosyl transferase family, a/b domain Alide2_2590 PF02885 Glycosyl transferase family, helical bundle domain Alide2_2591 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Alide2_2592 PF03061 Thioesterase superfamily Alide2_2596 PF01883 Iron-sulfur cluster assembly protein Alide2_2597 PF01592 NifU-like N terminal domain Alide2_2598 PF00266 Aminotransferase class-V Alide2_2600 PF00005 ABC transporter Alide2_2601 PF01458 Uncharacterized protein family (UPF0051) Alide2_2602 PF01165 Ribosomal protein S21 Alide2_2605 PF01144 Coenzyme A transferase Alide2_2606 PF01144 Coenzyme A transferase Alide2_2608 PF01757 Acyltransferase family Alide2_2609 PF00583 Acetyltransferase (GNAT) family Alide2_2609 PF00696 Amino acid kinase family Alide2_2611 PF01266 FAD dependent oxidoreductase Alide2_2614 PF02653 Branched-chain amino acid transport system / permease component Alide2_2616 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_2616 PF00005 ABC transporter Alide2_2617 PF00005 ABC transporter Alide2_2618 PF13458 Periplasmic binding protein Alide2_2619 PF00701 Dihydrodipicolinate synthetase family Alide2_2621 PF07729 FCD domain Alide2_2621 PF00392 Bacterial regulatory proteins, gntR family Alide2_2622 PF01966 HD domain Alide2_2623 PF02600 Disulfide bond formation protein DsbB Alide2_2624 PF00005 ABC transporter Alide2_2624 PF17850 CysA C-terminal regulatory domain Alide2_2624 PF12857 TOBE-like domain Alide2_2625 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_2626 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_2629 PF03466 LysR substrate binding domain Alide2_2629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2630 PF02525 Flavodoxin-like fold Alide2_2631 PF03358 NADPH-dependent FMN reductase Alide2_2632 PF03180 NLPA lipoprotein Alide2_2633 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_2634 PF09383 NIL domain Alide2_2634 PF00005 ABC transporter Alide2_2636 PF13662 Toprim domain Alide2_2636 PF02132 RecR protein Alide2_2637 PF02575 YbaB/EbfC DNA-binding family Alide2_2638 PF12169 DNA polymerase III subunits gamma and tau domain III Alide2_2638 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Alide2_2638 PF12170 DNA polymerase III tau subunit V interacting with alpha Alide2_2639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2639 PF03459 TOBE domain Alide2_2640 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Alide2_2640 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Alide2_2641 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_2645 PF00005 ABC transporter Alide2_2646 PF01032 FecCD transport family Alide2_2649 PF00593 TonB dependent receptor Alide2_2649 PF07715 TonB-dependent Receptor Plug Domain Alide2_2652 PF02678 Pirin Alide2_2652 PF05726 Pirin C-terminal cupin domain Alide2_2653 PF02678 Pirin Alide2_2653 PF05726 Pirin C-terminal cupin domain Alide2_2654 PF12705 PD-(D/E)XK nuclease superfamily Alide2_2654 PF13361 UvrD-like helicase C-terminal domain Alide2_2654 PF00580 UvrD/REP helicase N-terminal domain Alide2_2655 PF12705 PD-(D/E)XK nuclease superfamily Alide2_2656 PF00085 Thioredoxin Alide2_2657 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide2_2657 PF07497 Rho termination factor, RNA-binding domain Alide2_2657 PF07498 Rho termination factor, N-terminal domain Alide2_2658 PF01197 Ribosomal protein L31 Alide2_2660 PF01554 MatE Alide2_2661 PF11808 Phosphate regulon sensor protein PhoR Alide2_2661 PF00989 PAS fold Alide2_2661 PF00512 His Kinase A (phospho-acceptor) domain Alide2_2661 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_2662 PF00486 Transcriptional regulatory protein, C terminal Alide2_2662 PF00072 Response regulator receiver domain Alide2_2663 PF01895 PhoU domain Alide2_2664 PF00005 ABC transporter Alide2_2665 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_2666 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_2667 PF12849 PBP superfamily domain Alide2_2668 PF02541 Ppx/GppA phosphatase family Alide2_2669 PF00300 Histidine phosphatase superfamily (branch 1) Alide2_2670 PF17941 Polyphosphate kinase C-terminal domain 1 Alide2_2670 PF13090 Polyphosphate kinase C-terminal domain 2 Alide2_2670 PF13089 Polyphosphate kinase N-terminal domain Alide2_2670 PF02503 Polyphosphate kinase middle domain Alide2_2672 PF00563 EAL domain Alide2_2672 PF03707 Bacterial signalling protein N terminal repeat Alide2_2672 PF00990 Diguanylate cyclase, GGDEF domain Alide2_2673 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Alide2_2673 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Alide2_2673 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alide2_2673 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Alide2_2674 PF00809 Pterin binding enzyme Alide2_2675 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_2675 PF06480 FtsH Extracellular Alide2_2675 PF17862 AAA+ lid domain Alide2_2675 PF01434 Peptidase family M41 Alide2_2676 PF01728 FtsJ-like methyltransferase Alide2_2677 PF01985 CRS1 / YhbY (CRM) domain Alide2_2680 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide2_2680 PF03449 Transcription elongation factor, N-terminal Alide2_2681 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_2681 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Alide2_2681 PF02142 MGS-like domain Alide2_2682 PF00117 Glutamine amidotransferase class-I Alide2_2682 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Alide2_2685 PF01527 Transposase Alide2_2698 PF00216 Bacterial DNA-binding protein Alide2_2700 PF01527 Transposase Alide2_2701 PF13276 HTH-like domain Alide2_2701 PF13683 Integrase core domain Alide2_2707 PF07731 Multicopper oxidase Alide2_2707 PF07732 Multicopper oxidase Alide2_2711 PF02049 Flagellar hook-basal body complex protein FliE Alide2_2712 PF00871 Acetokinase family Alide2_2713 PF13411 MerR HTH family regulatory protein Alide2_2716 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Alide2_2716 PF09363 XFP C-terminal domain Alide2_2716 PF09364 XFP N-terminal domain Alide2_2719 PF03109 ABC1 family Alide2_2720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide2_2720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_2721 PF08241 Methyltransferase domain Alide2_2724 PF13180 PDZ domain Alide2_2724 PF17820 PDZ domain Alide2_2725 PF14572 Phosphoribosyl synthetase-associated domain Alide2_2725 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Alide2_2726 PF02885 Glycosyl transferase family, helical bundle domain Alide2_2726 PF00591 Glycosyl transferase family, a/b domain Alide2_2726 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Alide2_2727 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Alide2_2727 PF00753 Metallo-beta-lactamase superfamily Alide2_2727 PF10996 Beta-Casp domain Alide2_2729 PF04536 TPM domain Alide2_2732 PF00403 Heavy-metal-associated domain Alide2_2733 PF03976 Polyphosphate kinase 2 (PPK2) Alide2_2735 PF00376 MerR family regulatory protein Alide2_2735 PF09278 MerR, DNA binding Alide2_2739 PF00873 AcrB/AcrD/AcrF family Alide2_2740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_2743 PF13194 Domain of unknown function (DUF4010) Alide2_2746 PF11339 Protein of unknown function (DUF3141) Alide2_2747 PF04945 YHS domain Alide2_2749 PF00403 Heavy-metal-associated domain Alide2_2754 PF00072 Response regulator receiver domain Alide2_2754 PF00486 Transcriptional regulatory protein, C terminal Alide2_2755 PF13333 Integrase core domain Alide2_2755 PF13276 HTH-like domain Alide2_2755 PF00665 Integrase core domain Alide2_2756 PF01527 Transposase Alide2_2777 PF17762 HTH domain found in ParB protein Alide2_2777 PF02195 ParB-like nuclease domain Alide2_2796 PF01381 Helix-turn-helix Alide2_2799 PF01464 Transglycosylase SLT domain Alide2_2805 PF03743 Bacterial conjugation TrbI-like protein Alide2_2806 PF13098 Thioredoxin-like domain Alide2_2806 PF10411 Disulfide bond isomerase protein N-terminus Alide2_2808 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer Alide2_2810 PF10502 Signal peptidase, peptidase S26 Alide2_2813 PF06834 TraU protein Alide2_2823 PF13411 MerR HTH family regulatory protein Alide2_2824 PF00216 Bacterial DNA-binding protein Alide2_2825 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Alide2_2825 PF01588 Putative tRNA binding domain Alide2_2825 PF03147 Ferredoxin-fold anticodon binding domain Alide2_2825 PF03484 tRNA synthetase B5 domain Alide2_2825 PF03483 B3/4 domain Alide2_2826 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Alide2_2826 PF01409 tRNA synthetases class II core domain (F) Alide2_2827 PF00453 Ribosomal protein L20 Alide2_2828 PF01632 Ribosomal protein L35 Alide2_2829 PF00707 Translation initiation factor IF-3, C-terminal domain Alide2_2829 PF05198 Translation initiation factor IF-3, N-terminal domain Alide2_2830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Alide2_2830 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Alide2_2830 PF02824 TGS domain Alide2_2830 PF03129 Anticodon binding domain Alide2_2832 PF00463 Isocitrate lyase family Alide2_2837 PF01618 MotA/TolQ/ExbB proton channel family Alide2_2838 PF02472 Biopolymer transport protein ExbD/TolR Alide2_2840 PF03928 Haem-degrading Alide2_2841 PF01027 Inhibitor of apoptosis-promoting Bax1 Alide2_2843 PF07690 Major Facilitator Superfamily Alide2_2845 PF00893 Small Multidrug Resistance protein Alide2_2846 PF02417 Chromate transporter Alide2_2848 PF02146 Sir2 family Alide2_2850 PF07237 Protein of unknown function (DUF1428) Alide2_2857 PF00588 SpoU rRNA Methylase family Alide2_2857 PF08032 RNA 2'-O ribose methyltransferase substrate binding Alide2_2858 PF00375 Sodium:dicarboxylate symporter family Alide2_2859 PF00005 ABC transporter Alide2_2860 PF13472 GDSL-like Lipase/Acylhydrolase family Alide2_2862 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide2_2864 PF00916 Sulfate permease family Alide2_2864 PF01740 STAS domain Alide2_2865 PF05230 MASE2 domain Alide2_2865 PF00990 Diguanylate cyclase, GGDEF domain Alide2_2866 PF10609 NUBPL iron-transfer P-loop NTPase Alide2_2867 PF13193 AMP-binding enzyme C-terminal domain Alide2_2867 PF16177 Acetyl-coenzyme A synthetase N-terminus Alide2_2867 PF00501 AMP-binding enzyme Alide2_2869 PF07995 Glucose / Sorbosone dehydrogenase Alide2_2870 PF03466 LysR substrate binding domain Alide2_2870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2871 PF00171 Aldehyde dehydrogenase family Alide2_2873 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_2873 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_2873 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_2875 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Alide2_2875 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Alide2_2879 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_2880 PF04320 Protein with unknown function (DUF469) Alide2_2881 PF08666 SAF domain Alide2_2881 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Alide2_2882 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2883 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Alide2_2883 PF13378 Enolase C-terminal domain-like Alide2_2885 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2886 PF00701 Dihydrodipicolinate synthetase family Alide2_2887 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2888 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_2888 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide2_2889 PF13378 Enolase C-terminal domain-like Alide2_2890 PF00171 Aldehyde dehydrogenase family Alide2_2891 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Alide2_2892 PF04377 Arginine-tRNA-protein transferase, C terminus Alide2_2892 PF04376 Arginine-tRNA-protein transferase, N terminus Alide2_2893 PF02678 Pirin Alide2_2893 PF17954 Quercetinase C-terminal cupin domain Alide2_2894 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2894 PF03466 LysR substrate binding domain Alide2_2895 PF01593 Flavin containing amine oxidoreductase Alide2_2896 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alide2_2897 PF02390 Putative methyltransferase Alide2_2898 PF00990 Diguanylate cyclase, GGDEF domain Alide2_2899 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Alide2_2899 PF01411 tRNA synthetases class II (A) Alide2_2899 PF02272 DHHA1 domain Alide2_2900 PF00701 Dihydrodipicolinate synthetase family Alide2_2902 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide2_2903 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide2_2904 PF02615 Malate/L-lactate dehydrogenase Alide2_2905 PF00392 Bacterial regulatory proteins, gntR family Alide2_2905 PF07729 FCD domain Alide2_2906 PF00849 RNA pseudouridylate synthase Alide2_2907 PF13380 CoA binding domain Alide2_2907 PF00583 Acetyltransferase (GNAT) family Alide2_2907 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide2_2908 PF00534 Glycosyl transferases group 1 Alide2_2908 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Alide2_2909 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Alide2_2909 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Alide2_2909 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Alide2_2909 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Alide2_2910 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2911 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_2912 PF04962 KduI/IolB family Alide2_2913 PF00294 pfkB family carbohydrate kinase Alide2_2915 PF02805 Metal binding domain of Ada Alide2_2915 PF12833 Helix-turn-helix domain Alide2_2916 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Alide2_2916 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Alide2_2918 PF00211 Adenylate and Guanylate cyclase catalytic domain Alide2_2918 PF16701 Adenylate cyclase regulatory domain Alide2_2919 PF02016 LD-carboxypeptidase N-terminal domain Alide2_2919 PF17676 LD-carboxypeptidase C-terminal domain Alide2_2920 PF14437 MafB19-like deaminase Alide2_2922 PF12392 Collagenase Alide2_2922 PF01136 Peptidase family U32 Alide2_2923 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide2_2924 PF03781 Sulfatase-modifying factor enzyme 1 Alide2_2924 PF12867 DinB superfamily Alide2_2925 PF10017 Histidine-specific methyltransferase, SAM-dependent Alide2_2926 PF03922 OmpW family Alide2_2927 PF05661 Protein of unknown function (DUF808) Alide2_2928 PF02769 AIR synthase related protein, C-terminal domain Alide2_2928 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Alide2_2928 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Alide2_2929 PF00557 Metallopeptidase family M24 Alide2_2930 PF01966 HD domain Alide2_2930 PF01909 Nucleotidyltransferase domain Alide2_2930 PF08335 GlnD PII-uridylyltransferase Alide2_2931 PF00860 Permease family Alide2_2932 PF01327 Polypeptide deformylase Alide2_2933 PF04304 Protein of unknown function (DUF454) Alide2_2937 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide2_2939 PF03971 Monomeric isocitrate dehydrogenase Alide2_2940 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Alide2_2940 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Alide2_2941 PF13742 OB-fold nucleic acid binding domain Alide2_2941 PF02601 Exonuclease VII, large subunit Alide2_2942 PF01618 MotA/TolQ/ExbB proton channel family Alide2_2943 PF02472 Biopolymer transport protein ExbD/TolR Alide2_2944 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Alide2_2945 PF03966 Trm112p-like protein Alide2_2946 PF02348 Cytidylyltransferase Alide2_2947 PF05191 Adenylate kinase, active site lid Alide2_2948 PF17763 Glutaminase/Asparaginase C-terminal domain Alide2_2948 PF00710 Asparaginase, N-terminal Alide2_2949 PF01726 LexA DNA binding domain Alide2_2949 PF00717 Peptidase S24-like Alide2_2951 PF00270 DEAD/DEAH box helicase Alide2_2951 PF11898 Domain of unknown function (DUF3418) Alide2_2951 PF04408 Helicase associated domain (HA2) Alide2_2951 PF00271 Helicase conserved C-terminal domain Alide2_2951 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Alide2_2952 PF02803 Thiolase, C-terminal domain Alide2_2952 PF00108 Thiolase, N-terminal domain Alide2_2953 PF13193 AMP-binding enzyme C-terminal domain Alide2_2953 PF00501 AMP-binding enzyme Alide2_2954 PF02632 BioY family Alide2_2956 PF00005 ABC transporter Alide2_2959 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide2_2963 PF01695 IstB-like ATP binding protein Alide2_2964 PF00665 Integrase core domain Alide2_2965 PF05284 Protein of unknown function (DUF736) Alide2_2966 PF01381 Helix-turn-helix Alide2_2971 PF13614 AAA domain Alide2_2974 PF10502 Signal peptidase, peptidase S26 Alide2_2976 PF00762 Ferrochelatase Alide2_2978 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Alide2_2979 PF00361 Proton-conducting membrane transporter Alide2_2979 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alide2_2980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2980 PF03466 LysR substrate binding domain Alide2_2981 PF03741 Integral membrane protein TerC family Alide2_2984 PF03466 LysR substrate binding domain Alide2_2984 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_2985 PF00255 Glutathione peroxidase Alide2_2986 PF08338 Domain of unknown function (DUF1731) Alide2_2986 PF01370 NAD dependent epimerase/dehydratase family Alide2_2988 PF04244 Deoxyribodipyrimidine photo-lyase-related protein Alide2_2989 PF02469 Fasciclin domain Alide2_2990 PF03441 FAD binding domain of DNA photolyase Alide2_2990 PF00875 DNA photolyase Alide2_2991 PF08212 Lipocalin-like domain Alide2_2993 PF01593 Flavin containing amine oxidoreductase Alide2_2999 PF00106 short chain dehydrogenase Alide2_3002 PF03441 FAD binding domain of DNA photolyase Alide2_3002 PF00875 DNA photolyase Alide2_3003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3003 PF03466 LysR substrate binding domain Alide2_3004 PF00665 Integrase core domain Alide2_3005 PF01695 IstB-like ATP binding protein Alide2_3006 PF17761 DUF1016 N-terminal domain Alide2_3006 PF06250 YhcG PDDEXK nuclease domain Alide2_3008 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3008 PF03466 LysR substrate binding domain Alide2_3009 PF01081 KDPG and KHG aldolase Alide2_3010 PF00920 Dehydratase family Alide2_3011 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide2_3012 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide2_3013 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Alide2_3015 PF00356 Bacterial regulatory proteins, lacI family Alide2_3015 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Alide2_3016 PF07724 AAA domain (Cdc48 subfamily) Alide2_3016 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_3016 PF17871 AAA lid domain Alide2_3016 PF02861 Clp amino terminal domain, pathogenicity island component Alide2_3016 PF10431 C-terminal, D2-small domain, of ClpB protein Alide2_3017 PF02617 ATP-dependent Clp protease adaptor protein ClpS Alide2_3018 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Alide2_3018 PF07733 Bacterial DNA polymerase III alpha NTPase domain Alide2_3018 PF02811 PHP domain Alide2_3018 PF14579 Helix-hairpin-helix motif Alide2_3018 PF01336 OB-fold nucleic acid binding domain Alide2_3019 PF13525 Outer membrane lipoprotein Alide2_3020 PF04851 Type III restriction enzyme, res subunit Alide2_3020 PF13307 Helicase C-terminal domain Alide2_3023 PF03969 AFG1-like ATPase Alide2_3024 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_3024 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide2_3025 PF00364 Biotin-requiring enzyme Alide2_3025 PF02817 e3 binding domain Alide2_3025 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Alide2_3026 PF00676 Dehydrogenase E1 component Alide2_3026 PF16078 2-oxoglutarate dehydrogenase N-terminus Alide2_3026 PF16870 2-oxoglutarate dehydrogenase C-terminal Alide2_3026 PF02779 Transketolase, pyrimidine binding domain Alide2_3027 PF01594 AI-2E family transporter Alide2_3028 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3031 PF03466 LysR substrate binding domain Alide2_3032 PF00582 Universal stress protein family Alide2_3033 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide2_3033 PF00005 ABC transporter Alide2_3034 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide2_3034 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3035 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3037 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide2_3039 PF00892 EamA-like transporter family Alide2_3040 PF04325 Protein of unknown function (DUF465) Alide2_3041 PF01068 ATP dependent DNA ligase domain Alide2_3041 PF14743 DNA ligase OB-like domain Alide2_3042 PF03741 Integral membrane protein TerC family Alide2_3043 PF01276 Orn/Lys/Arg decarboxylase, major domain Alide2_3043 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Alide2_3043 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Alide2_3045 PF01145 SPFH domain / Band 7 family Alide2_3046 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3046 PF03466 LysR substrate binding domain Alide2_3047 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide2_3047 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide2_3047 PF00205 Thiamine pyrophosphate enzyme, central domain Alide2_3052 PF13276 HTH-like domain Alide2_3052 PF00665 Integrase core domain Alide2_3052 PF13333 Integrase core domain Alide2_3053 PF01527 Transposase Alide2_3057 PF13007 Transposase C of IS166 homeodomain Alide2_3057 PF13817 IS66 C-terminal element Alide2_3057 PF03050 Transposase IS66 family Alide2_3057 PF13005 zinc-finger binding domain of transposase IS66 Alide2_3062 PF09588 YqaJ-like viral recombinase domain Alide2_3067 PF01381 Helix-turn-helix Alide2_3069 PF00136 DNA polymerase family B Alide2_3069 PF03104 DNA polymerase family B, exonuclease domain Alide2_3071 PF05930 Prophage CP4-57 regulatory protein (AlpA) Alide2_3073 PF00589 Phage integrase family Alide2_3073 PF13356 Arm DNA-binding domain Alide2_3074 PF01464 Transglycosylase SLT domain Alide2_3074 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide2_3080 PF13193 AMP-binding enzyme C-terminal domain Alide2_3080 PF00501 AMP-binding enzyme Alide2_3082 PF00005 ABC transporter Alide2_3083 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_3083 PF00005 ABC transporter Alide2_3085 PF02653 Branched-chain amino acid transport system / permease component Alide2_3088 PF02803 Thiolase, C-terminal domain Alide2_3088 PF00108 Thiolase, N-terminal domain Alide2_3089 PF13193 AMP-binding enzyme C-terminal domain Alide2_3089 PF00501 AMP-binding enzyme Alide2_3093 PF04362 Bacterial Fe(2+) trafficking Alide2_3094 PF03458 UPF0126 domain Alide2_3095 PF01266 FAD dependent oxidoreductase Alide2_3095 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Alide2_3096 PF01925 Sulfite exporter TauE/SafE Alide2_3099 PF01507 Phosphoadenosine phosphosulfate reductase family Alide2_3100 PF01507 Phosphoadenosine phosphosulfate reductase family Alide2_3101 PF00009 Elongation factor Tu GTP binding domain Alide2_3102 PF00037 4Fe-4S binding domain Alide2_3102 PF11953 Domain of unknown function (DUF3470) Alide2_3103 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_3106 PF08543 Phosphomethylpyrimidine kinase Alide2_3107 PF01266 FAD dependent oxidoreductase Alide2_3109 PF05690 Thiazole biosynthesis protein ThiG Alide2_3110 PF02581 Thiamine monophosphate synthase Alide2_3112 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Alide2_3112 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide2_3112 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide2_3113 PF00378 Enoyl-CoA hydratase/isomerase Alide2_3114 PF13545 Crp-like helix-turn-helix domain Alide2_3114 PF00027 Cyclic nucleotide-binding domain Alide2_3116 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_3116 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_3116 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_3117 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Alide2_3117 PF14850 DNA-binding domain of Proline dehydrogenase Alide2_3117 PF01619 Proline dehydrogenase Alide2_3117 PF00171 Aldehyde dehydrogenase family Alide2_3118 PF00474 Sodium:solute symporter family Alide2_3119 PF09339 IclR helix-turn-helix domain Alide2_3119 PF01614 Bacterial transcriptional regulator Alide2_3120 PF00768 D-alanyl-D-alanine carboxypeptidase Alide2_3121 PF00682 HMGL-like Alide2_3121 PF08502 LeuA allosteric (dimerisation) domain Alide2_3122 PF00682 HMGL-like Alide2_3122 PF08502 LeuA allosteric (dimerisation) domain Alide2_3123 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3123 PF03466 LysR substrate binding domain Alide2_3125 PF07690 Major Facilitator Superfamily Alide2_3127 PF13417 Glutathione S-transferase, N-terminal domain Alide2_3128 PF01066 CDP-alcohol phosphatidyltransferase Alide2_3129 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Alide2_3129 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Alide2_3130 PF10369 Small subunit of acetolactate synthase Alide2_3131 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Alide2_3131 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Alide2_3131 PF00205 Thiamine pyrophosphate enzyme, central domain Alide2_3132 PF08281 Sigma-70, region 4 Alide2_3132 PF04542 Sigma-70 region 2 Alide2_3136 PF01219 Prokaryotic diacylglycerol kinase Alide2_3137 PF03641 Possible lysine decarboxylase Alide2_3138 PF00543 Nitrogen regulatory protein P-II Alide2_3139 PF00795 Carbon-nitrogen hydrolase Alide2_3139 PF02540 NAD synthase Alide2_3142 PF00672 HAMP domain Alide2_3142 PF02203 Tar ligand binding domain homologue Alide2_3142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_3143 PF01584 CheW-like domain Alide2_3144 PF00719 Inorganic pyrophosphatase Alide2_3145 PF03030 Inorganic H+ pyrophosphatase Alide2_3146 PF00171 Aldehyde dehydrogenase family Alide2_3149 PF06463 Molybdenum Cofactor Synthesis C Alide2_3149 PF04055 Radical SAM superfamily Alide2_3150 PF12804 MobA-like NTP transferase domain Alide2_3152 PF03453 MoeA N-terminal region (domain I and II) Alide2_3152 PF00994 Probable molybdopterin binding domain Alide2_3152 PF03454 MoeA C-terminal region (domain IV) Alide2_3155 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3157 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide2_3158 PF03466 LysR substrate binding domain Alide2_3158 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3159 PF03737 Aldolase/RraA Alide2_3159 PF00180 Isocitrate/isopropylmalate dehydrogenase Alide2_3160 PF03737 Aldolase/RraA Alide2_3162 PF00075 RNase H Alide2_3163 PF08241 Methyltransferase domain Alide2_3164 PF00753 Metallo-beta-lactamase superfamily Alide2_3164 PF16123 Hydroxyacylglutathione hydrolase C-terminus Alide2_3165 PF01464 Transglycosylase SLT domain Alide2_3165 PF01476 LysM domain Alide2_3168 PF13356 Arm DNA-binding domain Alide2_3168 PF00589 Phage integrase family Alide2_3179 PF00899 ThiF family Alide2_3180 PF16331 TolA binding protein trimerisation Alide2_3180 PF13174 Tetratricopeptide repeat Alide2_3181 PF00691 OmpA family Alide2_3182 PF04052 TolB amino-terminal domain Alide2_3182 PF07676 WD40-like Beta Propeller Repeat Alide2_3183 PF00664 ABC transporter transmembrane region Alide2_3183 PF00005 ABC transporter Alide2_3184 PF00289 Biotin carboxylase, N-terminal domain Alide2_3184 PF02785 Biotin carboxylase C-terminal domain Alide2_3184 PF00364 Biotin-requiring enzyme Alide2_3184 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_3185 PF02682 Carboxyltransferase domain, subdomain C and D Alide2_3186 PF07286 Protein of unknown function (DUF1445) Alide2_3187 PF03746 LamB/YcsF family Alide2_3189 PF00392 Bacterial regulatory proteins, gntR family Alide2_3189 PF07729 FCD domain Alide2_3193 PF01026 TatD related DNase Alide2_3195 PF09115 DNA polymerase III, delta subunit, C terminal Alide2_3196 PF02223 Thymidylate kinase Alide2_3197 PF02618 YceG-like family Alide2_3199 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Alide2_3200 PF07690 Major Facilitator Superfamily Alide2_3201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_3201 PF08448 PAS fold Alide2_3201 PF13426 PAS domain Alide2_3201 PF00072 Response regulator receiver domain Alide2_3201 PF00512 His Kinase A (phospho-acceptor) domain Alide2_3202 PF00196 Bacterial regulatory proteins, luxR family Alide2_3202 PF00072 Response regulator receiver domain Alide2_3205 PF07859 alpha/beta hydrolase fold Alide2_3206 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide2_3209 PF04909 Amidohydrolase Alide2_3210 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3211 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3212 PF02515 CoA-transferase family III Alide2_3214 PF00356 Bacterial regulatory proteins, lacI family Alide2_3215 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3216 PF00501 AMP-binding enzyme Alide2_3216 PF13193 AMP-binding enzyme C-terminal domain Alide2_3218 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3221 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3222 PF17674 HHH domain Alide2_3222 PF16921 Tex protein YqgF-like domain Alide2_3222 PF00575 S1 RNA binding domain Alide2_3222 PF09371 Tex-like protein N-terminal domain Alide2_3227 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Alide2_3227 PF01243 Pyridoxamine 5'-phosphate oxidase Alide2_3231 PF00593 TonB dependent receptor Alide2_3231 PF07715 TonB-dependent Receptor Plug Domain Alide2_3232 PF01625 Peptide methionine sulfoxide reductase Alide2_3233 PF17922 Tetracyclin repressor-like, C-terminal domain Alide2_3233 PF00440 Bacterial regulatory proteins, tetR family Alide2_3236 PF02321 Outer membrane efflux protein Alide2_3237 PF01076 Plasmid recombination enzyme Alide2_3241 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_3241 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_3241 PF12806 Acetyl-CoA dehydrogenase C-terminal like Alide2_3241 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_3242 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3243 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3244 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide2_3245 PF00108 Thiolase, N-terminal domain Alide2_3245 PF02803 Thiolase, C-terminal domain Alide2_3246 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide2_3246 PF00378 Enoyl-CoA hydratase/isomerase Alide2_3246 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide2_3247 PF00005 ABC transporter Alide2_3248 PF00005 ABC transporter Alide2_3248 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_3250 PF02653 Branched-chain amino acid transport system / permease component Alide2_3252 PF00501 AMP-binding enzyme Alide2_3252 PF13193 AMP-binding enzyme C-terminal domain Alide2_3253 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Alide2_3254 PF01641 SelR domain Alide2_3255 PF04279 Intracellular septation protein A Alide2_3259 PF18073 Rubredoxin metal binding domain Alide2_3261 PF00361 Proton-conducting membrane transporter Alide2_3261 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Alide2_3261 PF13244 Domain of unknown function (DUF4040) Alide2_3261 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alide2_3262 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Alide2_3263 PF00361 Proton-conducting membrane transporter Alide2_3265 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Alide2_3268 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Alide2_3271 PF02646 RmuC family Alide2_3272 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide2_3272 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_3274 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Alide2_3274 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Alide2_3276 PF09361 Phasin protein Alide2_3278 PF00106 short chain dehydrogenase Alide2_3279 PF00589 Phage integrase family Alide2_3279 PF13356 Arm DNA-binding domain Alide2_3294 PF17762 HTH domain found in ParB protein Alide2_3294 PF02195 ParB-like nuclease domain Alide2_3339 PF01464 Transglycosylase SLT domain Alide2_3344 PF03743 Bacterial conjugation TrbI-like protein Alide2_3345 PF13098 Thioredoxin-like domain Alide2_3345 PF10411 Disulfide bond isomerase protein N-terminus Alide2_3347 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer Alide2_3352 PF06834 TraU protein Alide2_3365 PF03976 Polyphosphate kinase 2 (PPK2) Alide2_3366 PF00403 Heavy-metal-associated domain Alide2_3367 PF07690 Major Facilitator Superfamily Alide2_3369 PF04536 TPM domain Alide2_3371 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Alide2_3371 PF10996 Beta-Casp domain Alide2_3371 PF00753 Metallo-beta-lactamase superfamily Alide2_3372 PF00591 Glycosyl transferase family, a/b domain Alide2_3372 PF02885 Glycosyl transferase family, helical bundle domain Alide2_3372 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Alide2_3374 PF13180 PDZ domain Alide2_3375 PF00696 Amino acid kinase family Alide2_3377 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Alide2_3377 PF00403 Heavy-metal-associated domain Alide2_3377 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_3379 PF00403 Heavy-metal-associated domain Alide2_3380 PF02411 MerT mercuric transport protein Alide2_3381 PF00376 MerR family regulatory protein Alide2_3381 PF09278 MerR, DNA binding Alide2_3387 PF00873 AcrB/AcrD/AcrF family Alide2_3390 PF01527 Transposase Alide2_3391 PF13333 Integrase core domain Alide2_3391 PF00665 Integrase core domain Alide2_3391 PF13276 HTH-like domain Alide2_3394 PF01022 Bacterial regulatory protein, arsR family Alide2_3395 PF01209 ubiE/COQ5 methyltransferase family Alide2_3399 PF02321 Outer membrane efflux protein Alide2_3400 PF00529 HlyD membrane-fusion protein of T1SS Alide2_3400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_3401 PF00543 Nitrogen regulatory protein P-II Alide2_3402 PF00873 AcrB/AcrD/AcrF family Alide2_3403 PF00403 Heavy-metal-associated domain Alide2_3404 PF00072 Response regulator receiver domain Alide2_3404 PF00486 Transcriptional regulatory protein, C terminal Alide2_3405 PF00512 His Kinase A (phospho-acceptor) domain Alide2_3405 PF00672 HAMP domain Alide2_3405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_3411 PF00749 tRNA synthetases class I (E and Q), catalytic domain Alide2_3412 PF01053 Cys/Met metabolism PLP-dependent enzyme Alide2_3413 PF00156 Phosphoribosyl transferase domain Alide2_3414 PF02674 Colicin V production protein Alide2_3416 PF08245 Mur ligase middle domain Alide2_3416 PF02875 Mur ligase family, glutamate ligase domain Alide2_3417 PF03960 ArsC family Alide2_3419 PF06865 Pyrimidine/purine nucleoside phosphorylase Alide2_3420 PF00764 Arginosuccinate synthase Alide2_3421 PF00158 Sigma-54 interaction domain Alide2_3421 PF02954 Bacterial regulatory protein, Fis family Alide2_3421 PF01590 GAF domain Alide2_3422 PF08882 Acetone carboxylase gamma subunit Alide2_3423 PF02538 Hydantoinase B/oxoprolinase Alide2_3424 PF01968 Hydantoinase/oxoprolinase Alide2_3424 PF05378 Hydantoinase/oxoprolinase N-terminal region Alide2_3425 PF06508 Queuosine biosynthesis protein QueC Alide2_3426 PF02592 Putative vitamin uptake transporter Alide2_3428 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Alide2_3428 PF01565 FAD binding domain Alide2_3429 PF04461 Protein of unknown function (DUF520) Alide2_3432 PF02660 Glycerol-3-phosphate acyltransferase Alide2_3433 PF04073 Aminoacyl-tRNA editing domain Alide2_3434 PF00248 Aldo/keto reductase family Alide2_3435 PF08402 TOBE domain Alide2_3435 PF00005 ABC transporter Alide2_3436 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3439 PF01113 Dihydrodipicolinate reductase, N-terminus Alide2_3439 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain Alide2_3441 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Alide2_3441 PF11940 Domain of unknown function (DUF3458) Ig-like fold Alide2_3441 PF01433 Peptidase family M1 domain Alide2_3442 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Alide2_3443 PF18818 Metallopeptidase superfamily domain Alide2_3443 PF13362 Toprim domain Alide2_3443 PF08401 Domain of unknown function (DUF1738) Alide2_3454 PF02899 Phage integrase, N-terminal SAM-like domain Alide2_3454 PF00589 Phage integrase family Alide2_3455 PF08032 RNA 2'-O ribose methyltransferase substrate binding Alide2_3455 PF00588 SpoU rRNA Methylase family Alide2_3456 PF01351 Ribonuclease HII Alide2_3457 PF02684 Lipid-A-disaccharide synthetase Alide2_3458 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Alide2_3458 PF00132 Bacterial transferase hexapeptide (six repeats) Alide2_3459 PF07977 FabA-like domain Alide2_3460 PF14602 Hexapeptide repeat of succinyl-transferase Alide2_3460 PF00132 Bacterial transferase hexapeptide (six repeats) Alide2_3460 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Alide2_3462 PF01103 Surface antigen Alide2_3462 PF07244 Surface antigen variable number repeat Alide2_3463 PF02163 Peptidase family M50 Alide2_3463 PF17820 PDZ domain Alide2_3464 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Alide2_3464 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Alide2_3464 PF13288 DXP reductoisomerase C-terminal domain Alide2_3466 PF01255 Putative undecaprenyl diphosphate synthase Alide2_3467 PF01765 Ribosome recycling factor Alide2_3468 PF00696 Amino acid kinase family Alide2_3469 PF00889 Elongation factor TS Alide2_3470 PF00318 Ribosomal protein S2 Alide2_3471 PF01425 Amidase Alide2_3472 PF01266 FAD dependent oxidoreductase Alide2_3478 PF13411 MerR HTH family regulatory protein Alide2_3479 PF00403 Heavy-metal-associated domain Alide2_3484 PF03576 Peptidase family S58 Alide2_3486 PF12848 ABC transporter Alide2_3486 PF00005 ABC transporter Alide2_3487 PF00271 Helicase conserved C-terminal domain Alide2_3487 PF00270 DEAD/DEAH box helicase Alide2_3495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3495 PF03466 LysR substrate binding domain Alide2_3496 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_3496 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_3496 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_3497 PF02515 CoA-transferase family III Alide2_3498 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3502 PF00175 Oxidoreductase NAD-binding domain Alide2_3502 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_3502 PF00970 Oxidoreductase FAD-binding domain Alide2_3503 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_3504 PF03466 LysR substrate binding domain Alide2_3504 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3506 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3507 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3510 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Alide2_3511 PF00535 Glycosyl transferase family 2 Alide2_3512 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Alide2_3513 PF01743 Poly A polymerase head domain Alide2_3513 PF12626 Polymerase A arginine-rich C-terminus Alide2_3513 PF12627 Probable RNA and SrmB- binding site of polymerase A Alide2_3515 PF00308 Bacterial dnaA protein Alide2_3517 PF00586 AIR synthase related protein, N-terminal domain Alide2_3517 PF02769 AIR synthase related protein, C-terminal domain Alide2_3519 PF00582 Universal stress protein family Alide2_3520 PF13369 Transglutaminase-like superfamily Alide2_3521 PF03023 Lipid II flippase MurJ Alide2_3522 PF01649 Ribosomal protein S20 Alide2_3523 PF01863 Protein of unknown function DUF45 Alide2_3525 PF13007 Transposase C of IS166 homeodomain Alide2_3525 PF13817 IS66 C-terminal element Alide2_3525 PF13005 zinc-finger binding domain of transposase IS66 Alide2_3525 PF03050 Transposase IS66 family Alide2_3528 PF00665 Integrase core domain Alide2_3528 PF13276 HTH-like domain Alide2_3528 PF13333 Integrase core domain Alide2_3529 PF01527 Transposase Alide2_3531 PF13609 Gram-negative porin Alide2_3532 PF01695 IstB-like ATP binding protein Alide2_3533 PF00665 Integrase core domain Alide2_3537 PF03737 Aldolase/RraA Alide2_3539 PF00202 Aminotransferase class-III Alide2_3540 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Alide2_3540 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Alide2_3543 PF03692 Putative zinc- or iron-chelating domain Alide2_3545 PF07670 Nucleoside recognition Alide2_3545 PF02421 Ferrous iron transport protein B Alide2_3545 PF07664 Ferrous iron transport protein B C terminus Alide2_3548 PF04199 Putative cyclase Alide2_3549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3549 PF03466 LysR substrate binding domain Alide2_3550 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3551 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide2_3551 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3552 PF00005 ABC transporter Alide2_3552 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide2_3553 PF00005 ABC transporter Alide2_3553 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide2_3554 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide2_3556 PF00962 Adenosine/AMP deaminase Alide2_3558 PF01614 Bacterial transcriptional regulator Alide2_3558 PF09339 IclR helix-turn-helix domain Alide2_3559 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide2_3561 PF00005 ABC transporter Alide2_3562 PF01266 FAD dependent oxidoreductase Alide2_3563 PF02608 ABC transporter substrate-binding protein PnrA-like Alide2_3564 PF02608 ABC transporter substrate-binding protein PnrA-like Alide2_3567 PF00005 ABC transporter Alide2_3572 PF13609 Gram-negative porin Alide2_3573 PF01230 HIT domain Alide2_3574 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_3574 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Alide2_3575 PF07690 Major Facilitator Superfamily Alide2_3577 PF00005 ABC transporter Alide2_3578 PF00011 Hsp20/alpha crystallin family Alide2_3583 PF02653 Branched-chain amino acid transport system / permease component Alide2_3586 PF00005 ABC transporter Alide2_3587 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_3587 PF00005 ABC transporter Alide2_3588 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3588 PF03459 TOBE domain Alide2_3590 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3591 PF00005 ABC transporter Alide2_3591 PF03459 TOBE domain Alide2_3593 PF12849 PBP superfamily domain Alide2_3594 PF00005 ABC transporter Alide2_3595 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3596 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3596 PF03459 TOBE domain Alide2_3597 PF13091 PLD-like domain Alide2_3598 PF13193 AMP-binding enzyme C-terminal domain Alide2_3598 PF00501 AMP-binding enzyme Alide2_3599 PF08278 DNA primase DnaG DnaB-binding Alide2_3599 PF01807 CHC2 zinc finger Alide2_3599 PF08275 DNA primase catalytic core, N-terminal domain Alide2_3599 PF10410 DnaB-helicase binding domain of primase Alide2_3600 PF00140 Sigma-70 factor, region 1.2 Alide2_3600 PF04542 Sigma-70 region 2 Alide2_3600 PF03979 Sigma-70 factor, region 1.1 Alide2_3600 PF04546 Sigma-70, non-essential region Alide2_3600 PF04539 Sigma-70 region 3 Alide2_3600 PF04545 Sigma-70, region 4 Alide2_3603 PF08546 Ketopantoate reductase PanE/ApbA C terminal Alide2_3603 PF02558 Ketopantoate reductase PanE/ApbA Alide2_3604 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3605 PF02515 CoA-transferase family III Alide2_3606 PF00682 HMGL-like Alide2_3607 PF03466 LysR substrate binding domain Alide2_3607 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3609 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide2_3610 PF18693 TRAM domain Alide2_3610 PF00919 Uncharacterized protein family UPF0004 Alide2_3610 PF04055 Radical SAM superfamily Alide2_3611 PF07879 PHB/PHA accumulation regulator DNA-binding domain Alide2_3611 PF05233 PHB accumulation regulatory domain Alide2_3612 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Alide2_3614 PF02824 TGS domain Alide2_3614 PF13291 ACT domain Alide2_3614 PF04607 Region found in RelA / SpoT proteins Alide2_3616 PF00106 short chain dehydrogenase Alide2_3618 PF00486 Transcriptional regulatory protein, C terminal Alide2_3618 PF00072 Response regulator receiver domain Alide2_3619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_3619 PF00512 His Kinase A (phospho-acceptor) domain Alide2_3619 PF00672 HAMP domain Alide2_3620 PF02542 YgbB family Alide2_3621 PF02542 YgbB family Alide2_3621 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Alide2_3622 PF02559 CarD-like/TRCF domain Alide2_3622 PF00270 DEAD/DEAH box helicase Alide2_3622 PF00271 Helicase conserved C-terminal domain Alide2_3622 PF03461 TRCF domain Alide2_3622 PF17757 UvrB interaction domain Alide2_3624 PF13419 Haloacid dehalogenase-like hydrolase Alide2_3626 PF04397 LytTr DNA-binding domain Alide2_3626 PF00072 Response regulator receiver domain Alide2_3628 PF01738 Dienelactone hydrolase family Alide2_3629 PF00378 Enoyl-CoA hydratase/isomerase Alide2_3630 PF02515 CoA-transferase family III Alide2_3631 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3632 PF03466 LysR substrate binding domain Alide2_3632 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3634 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3636 PF03466 LysR substrate binding domain Alide2_3637 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Alide2_3637 PF01612 3'-5' exonuclease Alide2_3637 PF00476 DNA polymerase family A Alide2_3637 PF01367 5'-3' exonuclease, C-terminal SAM fold Alide2_3640 PF01636 Phosphotransferase enzyme family Alide2_3642 PF00360 Phytochrome region Alide2_3642 PF00990 Diguanylate cyclase, GGDEF domain Alide2_3642 PF01590 GAF domain Alide2_3642 PF00563 EAL domain Alide2_3644 PF13361 UvrD-like helicase C-terminal domain Alide2_3644 PF00580 UvrD/REP helicase N-terminal domain Alide2_3645 PF00478 IMP dehydrogenase / GMP reductase domain Alide2_3649 PF02514 CobN/Magnesium Chelatase Alide2_3650 PF00593 TonB dependent receptor Alide2_3650 PF07715 TonB-dependent Receptor Plug Domain Alide2_3652 PF00005 ABC transporter Alide2_3659 PF07690 Major Facilitator Superfamily Alide2_3662 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3663 PF01144 Coenzyme A transferase Alide2_3664 PF01144 Coenzyme A transferase Alide2_3669 PF05231 MASE1 Alide2_3669 PF08447 PAS fold Alide2_3669 PF08448 PAS fold Alide2_3669 PF13426 PAS domain Alide2_3669 PF00563 EAL domain Alide2_3669 PF00990 Diguanylate cyclase, GGDEF domain Alide2_3670 PF00271 Helicase conserved C-terminal domain Alide2_3670 PF00270 DEAD/DEAH box helicase Alide2_3671 PF13458 Periplasmic binding protein Alide2_3672 PF00929 Exonuclease Alide2_3673 PF01435 Peptidase family M48 Alide2_3674 PF01329 Pterin 4 alpha carbinolamine dehydratase Alide2_3675 PF03193 RsgA GTPase Alide2_3676 PF00916 Sulfate permease family Alide2_3676 PF01740 STAS domain Alide2_3677 PF00155 Aminotransferase class I and II Alide2_3678 PF17113 Regulatory signalling modulator protein AmpE Alide2_3678 PF03186 CobD/Cbib protein Alide2_3679 PF00293 NUDIX domain Alide2_3680 PF01245 Ribosomal protein L19 Alide2_3681 PF01746 tRNA (Guanine-1)-methyltransferase Alide2_3682 PF05239 PRC-barrel domain Alide2_3682 PF01782 RimM N-terminal domain Alide2_3683 PF00886 Ribosomal protein S16 Alide2_3686 PF01384 Phosphate transporter family Alide2_3687 PF01865 Protein of unknown function DUF47 Alide2_3690 PF00005 ABC transporter Alide2_3691 PF00005 ABC transporter Alide2_3691 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_3692 PF11862 Domain of unknown function (DUF3382) Alide2_3692 PF02653 Branched-chain amino acid transport system / permease component Alide2_3693 PF02653 Branched-chain amino acid transport system / permease component Alide2_3694 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_3694 PF16193 AAA C-terminal domain Alide2_3694 PF12002 MgsA AAA+ ATPase C terminal Alide2_3695 PF00589 Phage integrase family Alide2_3695 PF13495 Phage integrase, N-terminal SAM-like domain Alide2_3697 PF17820 PDZ domain Alide2_3697 PF13180 PDZ domain Alide2_3702 PF13683 Integrase core domain Alide2_3702 PF13276 HTH-like domain Alide2_3703 PF01527 Transposase Alide2_3707 PF03167 Uracil DNA glycosylase superfamily Alide2_3708 PF01040 UbiA prenyltransferase family Alide2_3709 PF03548 Outer membrane lipoprotein carrier protein LolA Alide2_3710 PF01580 FtsK/SpoIIIE family Alide2_3710 PF17854 FtsK alpha domain Alide2_3710 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Alide2_3710 PF09397 Ftsk gamma domain Alide2_3711 PF07992 Pyridine nucleotide-disulphide oxidoreductase Alide2_3712 PF00830 Ribosomal L28 family Alide2_3713 PF00471 Ribosomal protein L33 Alide2_3714 PF01189 16S rRNA methyltransferase RsmB/F Alide2_3714 PF01029 NusB family Alide2_3715 PF00551 Formyl transferase Alide2_3716 PF04337 Protein of unknown function, DUF480 Alide2_3717 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_3717 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_3717 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_3718 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_3718 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_3718 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_3720 PF01687 Riboflavin kinase Alide2_3720 PF06574 FAD synthetase Alide2_3721 PF08264 Anticodon-binding domain of tRNA Alide2_3721 PF00133 tRNA synthetases class I (I, L, M and V) Alide2_3721 PF06827 Zinc finger found in FPG and IleRS Alide2_3722 PF01252 Signal peptidase (SPase) II Alide2_3723 PF00356 Bacterial regulatory proteins, lacI family Alide2_3725 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3726 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3727 PF00005 ABC transporter Alide2_3727 PF08402 TOBE domain Alide2_3728 PF00149 Calcineurin-like phosphoesterase Alide2_3729 PF02690 Na+/Pi-cotransporter Alide2_3730 PF13593 SBF-like CPA transporter family (DUF4137) Alide2_3731 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3731 PF03466 LysR substrate binding domain Alide2_3733 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_3733 PF00107 Zinc-binding dehydrogenase Alide2_3734 PF00892 EamA-like transporter family Alide2_3735 PF00563 EAL domain Alide2_3735 PF00990 Diguanylate cyclase, GGDEF domain Alide2_3735 PF03707 Bacterial signalling protein N terminal repeat Alide2_3737 PF00106 short chain dehydrogenase Alide2_3738 PF01970 Tripartite tricarboxylate transporter TctA family Alide2_3740 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Alide2_3740 PF00437 Type II/IV secretion system protein Alide2_3743 PF01026 TatD related DNase Alide2_3745 PF01022 Bacterial regulatory protein, arsR family Alide2_3746 PF02627 Carboxymuconolactone decarboxylase family Alide2_3747 PF00595 PDZ domain Alide2_3748 PF07726 ATPase family associated with various cellular activities (AAA) Alide2_3748 PF17863 AAA lid domain Alide2_3749 PF01882 Protein of unknown function DUF58 Alide2_3750 PF07584 Aerotolerance regulator N-terminal Alide2_3750 PF00092 von Willebrand factor type A domain Alide2_3752 PF00005 ABC transporter Alide2_3752 PF00571 CBS domain Alide2_3753 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3754 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Alide2_3755 PF00027 Cyclic nucleotide-binding domain Alide2_3755 PF13545 Crp-like helix-turn-helix domain Alide2_3756 PF00206 Lyase Alide2_3756 PF10415 Fumarase C C-terminus Alide2_3758 PF00182 Chitinase class I Alide2_3759 PF01523 Putative modulator of DNA gyrase Alide2_3760 PF04751 Protein of unknown function (DUF615) Alide2_3761 PF00994 Probable molybdopterin binding domain Alide2_3762 PF00107 Zinc-binding dehydrogenase Alide2_3762 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_3764 PF00132 Bacterial transferase hexapeptide (six repeats) Alide2_3765 PF00588 SpoU rRNA Methylase family Alide2_3766 PF00459 Inositol monophosphatase family Alide2_3768 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Alide2_3769 PF00270 DEAD/DEAH box helicase Alide2_3769 PF08494 DEAD/H associated Alide2_3769 PF00271 Helicase conserved C-terminal domain Alide2_3770 PF03480 Bacterial extracellular solute-binding protein, family 7 Alide2_3771 PF02779 Transketolase, pyrimidine binding domain Alide2_3771 PF02780 Transketolase, C-terminal domain Alide2_3771 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Alide2_3772 PF00348 Polyprenyl synthetase Alide2_3773 PF02609 Exonuclease VII small subunit Alide2_3776 PF00581 Rhodanese-like domain Alide2_3777 PF00171 Aldehyde dehydrogenase family Alide2_3778 PF00753 Metallo-beta-lactamase superfamily Alide2_3778 PF03772 Competence protein Alide2_3780 PF00521 DNA gyrase/topoisomerase IV, subunit A Alide2_3781 PF01751 Toprim domain Alide2_3781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_3781 PF00986 DNA gyrase B subunit, carboxyl terminus Alide2_3781 PF00204 DNA gyrase B Alide2_3785 PF00701 Dihydrodipicolinate synthetase family Alide2_3786 PF06804 NlpB/DapX lipoprotein Alide2_3788 PF08007 Cupin superfamily protein Alide2_3789 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Alide2_3790 PF00692 dUTPase Alide2_3792 PF04127 DNA / pantothenate metabolism flavoprotein Alide2_3792 PF02441 Flavoprotein Alide2_3793 PF06418 CTP synthase N-terminus Alide2_3793 PF00117 Glutamine amidotransferase class-I Alide2_3794 PF00793 DAHP synthetase I family Alide2_3796 PF00113 Enolase, C-terminal TIM barrel domain Alide2_3796 PF03952 Enolase, N-terminal domain Alide2_3797 PF04977 Septum formation initiator Alide2_3798 PF00005 ABC transporter Alide2_3799 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3800 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3801 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide2_3802 PF01430 Hsp33 protein Alide2_3803 PF00132 Bacterial transferase hexapeptide (six repeats) Alide2_3804 PF04305 Protein of unknown function (DUF455) Alide2_3805 PF08668 HDOD domain Alide2_3805 PF00563 EAL domain Alide2_3806 PF00563 EAL domain Alide2_3806 PF08668 HDOD domain Alide2_3807 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3808 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_3808 PF08447 PAS fold Alide2_3810 PF02075 Crossover junction endodeoxyribonuclease RuvC Alide2_3811 PF01527 Transposase Alide2_3812 PF13276 HTH-like domain Alide2_3812 PF13683 Integrase core domain Alide2_3814 PF00912 Transglycosylase Alide2_3815 PF01488 Shikimate / quinate 5-dehydrogenase Alide2_3815 PF08501 Shikimate dehydrogenase substrate binding domain Alide2_3815 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Alide2_3817 PF00773 RNB domain Alide2_3818 PF08281 Sigma-70, region 4 Alide2_3818 PF04542 Sigma-70 region 2 Alide2_3820 PF00034 Cytochrome c Alide2_3822 PF05728 Uncharacterised protein family (UPF0227) Alide2_3823 PF01098 Cell cycle protein Alide2_3824 PF01523 Putative modulator of DNA gyrase Alide2_3825 PF00793 DAHP synthetase I family Alide2_3827 PF08245 Mur ligase middle domain Alide2_3827 PF02875 Mur ligase family, glutamate ligase domain Alide2_3827 PF01225 Mur ligase family, catalytic domain Alide2_3829 PF00578 AhpC/TSA family Alide2_3830 PF00364 Biotin-requiring enzyme Alide2_3831 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_3831 PF02785 Biotin carboxylase C-terminal domain Alide2_3831 PF00289 Biotin carboxylase, N-terminal domain Alide2_3834 PF00294 pfkB family carbohydrate kinase Alide2_3836 PF00268 Ribonucleotide reductase, small chain Alide2_3837 PF02867 Ribonucleotide reductase, barrel domain Alide2_3837 PF00317 Ribonucleotide reductase, all-alpha domain Alide2_3837 PF03477 ATP cone domain Alide2_3838 PF01510 N-acetylmuramoyl-L-alanine amidase Alide2_3839 PF00072 Response regulator receiver domain Alide2_3839 PF00158 Sigma-54 interaction domain Alide2_3839 PF02954 Bacterial regulatory protein, Fis family Alide2_3840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_3840 PF00512 His Kinase A (phospho-acceptor) domain Alide2_3842 PF01578 Cytochrome C assembly protein Alide2_3843 PF02978 Signal peptide binding domain Alide2_3843 PF00448 SRP54-type protein, GTPase domain Alide2_3843 PF02881 SRP54-type protein, helical bundle domain Alide2_3844 PF01938 TRAM domain Alide2_3844 PF00919 Uncharacterized protein family UPF0004 Alide2_3844 PF04055 Radical SAM superfamily Alide2_3848 PF10411 Disulfide bond isomerase protein N-terminus Alide2_3848 PF13098 Thioredoxin-like domain Alide2_3849 PF01494 FAD binding domain Alide2_3850 PF01926 50S ribosome-binding GTPase Alide2_3850 PF06071 Protein of unknown function (DUF933) Alide2_3852 PF01527 Transposase Alide2_3853 PF13276 HTH-like domain Alide2_3853 PF13683 Integrase core domain Alide2_3856 PF13817 IS66 C-terminal element Alide2_3856 PF13007 Transposase C of IS166 homeodomain Alide2_3856 PF13005 zinc-finger binding domain of transposase IS66 Alide2_3856 PF03050 Transposase IS66 family Alide2_3858 PF00665 Integrase core domain Alide2_3860 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_3860 PF12806 Acetyl-CoA dehydrogenase C-terminal like Alide2_3860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_3860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_3862 PF07690 Major Facilitator Superfamily Alide2_3865 PF05853 beta-keto acid cleavage enzyme Alide2_3866 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Alide2_3867 PF00107 Zinc-binding dehydrogenase Alide2_3867 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_3869 PF00355 Rieske [2Fe-2S] domain Alide2_3870 PF00196 Bacterial regulatory proteins, luxR family Alide2_3870 PF00072 Response regulator receiver domain Alide2_3872 PF07044 Protein of unknown function (DUF1329) Alide2_3875 PF03601 Conserved hypothetical protein 698 Alide2_3877 PF09335 SNARE associated Golgi protein Alide2_3878 PF01207 Dihydrouridine synthase (Dus) Alide2_3879 PF02954 Bacterial regulatory protein, Fis family Alide2_3880 PF02142 MGS-like domain Alide2_3880 PF01808 AICARFT/IMPCHase bienzyme Alide2_3881 PF00202 Aminotransferase class-III Alide2_3883 PF00301 Rubredoxin Alide2_3884 PF00072 Response regulator receiver domain Alide2_3885 PF00072 Response regulator receiver domain Alide2_3887 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Alide2_3887 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_3888 PF01627 Hpt domain Alide2_3888 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_3888 PF01584 CheW-like domain Alide2_3888 PF00072 Response regulator receiver domain Alide2_3889 PF02622 Uncharacterized ACR, COG1678 Alide2_3890 PF03652 Holliday junction resolvase Alide2_3891 PF00156 Phosphoribosyl transferase domain Alide2_3892 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Alide2_3892 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Alide2_3893 PF01979 Amidohydrolase family Alide2_3894 PF01553 Acyltransferase Alide2_3895 PF00005 ABC transporter Alide2_3895 PF08402 TOBE domain Alide2_3896 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_3897 PF03960 ArsC family Alide2_3898 PF13180 PDZ domain Alide2_3899 PF00072 Response regulator receiver domain Alide2_3899 PF00486 Transcriptional regulatory protein, C terminal Alide2_3900 PF08521 Two-component sensor kinase N-terminal Alide2_3900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_3900 PF00512 His Kinase A (phospho-acceptor) domain Alide2_3901 PF13396 Phospholipase_D-nuclease N-terminal Alide2_3901 PF13091 PLD-like domain Alide2_3902 PF00970 Oxidoreductase FAD-binding domain Alide2_3902 PF00175 Oxidoreductase NAD-binding domain Alide2_3902 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_3903 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide2_3907 PF01040 UbiA prenyltransferase family Alide2_3908 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide2_3909 PF09125 Cytochrome C oxidase subunit II, transmembrane Alide2_3909 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Alide2_3912 PF04357 TamB, inner membrane protein subunit of TAM complex Alide2_3916 PF00378 Enoyl-CoA hydratase/isomerase Alide2_3917 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_3917 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_3917 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_3918 PF02515 CoA-transferase family III Alide2_3919 PF00392 Bacterial regulatory proteins, gntR family Alide2_3920 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3922 PF10431 C-terminal, D2-small domain, of ClpB protein Alide2_3922 PF07724 AAA domain (Cdc48 subfamily) Alide2_3922 PF06689 ClpX C4-type zinc finger Alide2_3923 PF00034 Cytochrome c Alide2_3926 PF09339 IclR helix-turn-helix domain Alide2_3926 PF01614 Bacterial transcriptional regulator Alide2_3927 PF01144 Coenzyme A transferase Alide2_3928 PF01144 Coenzyme A transferase Alide2_3929 PF02803 Thiolase, C-terminal domain Alide2_3929 PF00108 Thiolase, N-terminal domain Alide2_3930 PF00106 short chain dehydrogenase Alide2_3931 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3933 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3933 PF03466 LysR substrate binding domain Alide2_3934 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3935 PF01546 Peptidase family M20/M25/M40 Alide2_3935 PF07687 Peptidase dimerisation domain Alide2_3936 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3937 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3939 PF04303 PrpF protein Alide2_3940 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3941 PF00694 Aconitase C-terminal domain Alide2_3942 PF00330 Aconitase family (aconitate hydratase) Alide2_3944 PF00392 Bacterial regulatory proteins, gntR family Alide2_3944 PF07702 UTRA domain Alide2_3945 PF00999 Sodium/hydrogen exchanger family Alide2_3945 PF02254 TrkA-N domain Alide2_3946 PF01810 LysE type translocator Alide2_3947 PF07015 VirC1 protein Alide2_3949 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_3949 PF03466 LysR substrate binding domain Alide2_3950 PF00588 SpoU rRNA Methylase family Alide2_3952 PF08241 Methyltransferase domain Alide2_3953 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Alide2_3953 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Alide2_3954 PF00115 Cytochrome C and Quinol oxidase polypeptide I Alide2_3956 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Alide2_3958 PF00510 Cytochrome c oxidase subunit III Alide2_3963 PF01040 UbiA prenyltransferase family Alide2_3964 PF02630 SCO1/SenC Alide2_3965 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_3966 PF04545 Sigma-70, region 4 Alide2_3966 PF00140 Sigma-70 factor, region 1.2 Alide2_3966 PF04542 Sigma-70 region 2 Alide2_3967 PF13817 IS66 C-terminal element Alide2_3967 PF13007 Transposase C of IS166 homeodomain Alide2_3967 PF03050 Transposase IS66 family Alide2_3967 PF13005 zinc-finger binding domain of transposase IS66 Alide2_3970 PF13683 Integrase core domain Alide2_3970 PF13276 HTH-like domain Alide2_3971 PF01527 Transposase Alide2_3975 PF06969 HemN C-terminal domain Alide2_3975 PF04055 Radical SAM superfamily Alide2_3976 PF01725 Ham1 family Alide2_3977 PF01138 3' exoribonuclease family, domain 1 Alide2_3977 PF03725 3' exoribonuclease family, domain 2 Alide2_3979 PF03793 PASTA domain Alide2_3979 PF00069 Protein kinase domain Alide2_3980 PF08340 Domain of unknown function (DUF1732) Alide2_3980 PF03755 YicC-like family, N-terminal region Alide2_3994 PF17758 Proteasomal ATPase OB N-terminal domain Alide2_3994 PF16450 Proteasomal ATPase OB C-terminal domain Alide2_3994 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_4000 PF00625 Guanylate kinase Alide2_4001 PF01192 RNA polymerase Rpb6 Alide2_4002 PF04607 Region found in RelA / SpoT proteins Alide2_4002 PF02824 TGS domain Alide2_4002 PF13291 ACT domain Alide2_4003 PF01272 Transcription elongation factor, GreA/GreB, C-term Alide2_4003 PF03449 Transcription elongation factor, N-terminal Alide2_4005 PF00312 Ribosomal protein S15 Alide2_4006 PF00013 KH domain Alide2_4006 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Alide2_4006 PF01138 3' exoribonuclease family, domain 1 Alide2_4006 PF00575 S1 RNA binding domain Alide2_4006 PF03725 3' exoribonuclease family, domain 2 Alide2_4007 PF00698 Acyl transferase domain Alide2_4007 PF08659 KR domain Alide2_4007 PF00109 Beta-ketoacyl synthase, N-terminal domain Alide2_4007 PF16197 Ketoacyl-synthetase C-terminal extension Alide2_4007 PF02801 Beta-ketoacyl synthase, C-terminal domain Alide2_4007 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_4007 PF14765 Polyketide synthase dehydratase Alide2_4007 PF00550 Phosphopantetheine attachment site Alide2_4008 PF00121 Triosephosphate isomerase Alide2_4009 PF03840 Preprotein translocase SecG subunit Alide2_4010 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Alide2_4011 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Alide2_4012 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Alide2_4013 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Alide2_4015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Alide2_4015 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide2_4015 PF10531 SLBB domain Alide2_4016 PF00384 Molybdopterin oxidoreductase Alide2_4016 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Alide2_4016 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Alide2_4017 PF00146 NADH dehydrogenase Alide2_4018 PF12838 4Fe-4S dicluster domain Alide2_4019 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Alide2_4020 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Alide2_4021 PF00361 Proton-conducting membrane transporter Alide2_4021 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Alide2_4022 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Alide2_4022 PF00361 Proton-conducting membrane transporter Alide2_4023 PF00361 Proton-conducting membrane transporter Alide2_4027 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide2_4027 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Alide2_4028 PF08676 MutL C terminal dimerisation domain Alide2_4028 PF01119 DNA mismatch repair protein, C-terminal domain Alide2_4030 PF09335 SNARE associated Golgi protein Alide2_4031 PF01979 Amidohydrolase family Alide2_4032 PF00860 Permease family Alide2_4033 PF03466 LysR substrate binding domain Alide2_4033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4034 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide2_4034 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alide2_4035 PF00941 FAD binding domain in molybdopterin dehydrogenase Alide2_4035 PF03450 CO dehydrogenase flavoprotein C-terminal domain Alide2_4037 PF01520 N-acetylmuramoyl-L-alanine amidase Alide2_4037 PF11741 AMIN domain Alide2_4038 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Alide2_4039 PF08331 Domain of unknown function (DUF1730) Alide2_4041 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4042 PF02899 Phage integrase, N-terminal SAM-like domain Alide2_4042 PF00589 Phage integrase family Alide2_4043 PF08241 Methyltransferase domain Alide2_4044 PF01964 Radical SAM ThiC family Alide2_4044 PF13667 ThiC-associated domain Alide2_4046 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Alide2_4049 PF13193 AMP-binding enzyme C-terminal domain Alide2_4049 PF00501 AMP-binding enzyme Alide2_4052 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4053 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_4053 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_4053 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_4054 PF12327 FtsZ family, C-terminal domain Alide2_4054 PF00091 Tubulin/FtsZ family, GTPase domain Alide2_4055 PF02491 SHS2 domain inserted in FTSA Alide2_4056 PF03799 Cell division protein FtsQ Alide2_4056 PF08478 POTRA domain, FtsQ-type Alide2_4057 PF07478 D-ala D-ala ligase C-terminus Alide2_4057 PF01820 D-ala D-ala ligase N-terminus Alide2_4058 PF08245 Mur ligase middle domain Alide2_4058 PF01225 Mur ligase family, catalytic domain Alide2_4058 PF02875 Mur ligase family, glutamate ligase domain Alide2_4059 PF04101 Glycosyltransferase family 28 C-terminal domain Alide2_4059 PF03033 Glycosyltransferase family 28 N-terminal domain Alide2_4060 PF01098 Cell cycle protein Alide2_4061 PF02875 Mur ligase family, glutamate ligase domain Alide2_4061 PF08245 Mur ligase middle domain Alide2_4062 PF00953 Glycosyl transferase family 4 Alide2_4062 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Alide2_4063 PF08245 Mur ligase middle domain Alide2_4063 PF02875 Mur ligase family, glutamate ligase domain Alide2_4063 PF01225 Mur ligase family, catalytic domain Alide2_4064 PF02875 Mur ligase family, glutamate ligase domain Alide2_4064 PF08245 Mur ligase middle domain Alide2_4065 PF03717 Penicillin-binding Protein dimerisation domain Alide2_4065 PF00905 Penicillin binding protein transpeptidase domain Alide2_4067 PF01795 MraW methylase family Alide2_4068 PF02381 MraZ protein, putative antitoxin-like Alide2_4069 PF07724 AAA domain (Cdc48 subfamily) Alide2_4069 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_4070 PF00227 Proteasome subunit Alide2_4072 PF01258 Prokaryotic dksA/traR C4-type zinc finger Alide2_4073 PF02492 CobW/HypB/UreG, nucleotide-binding domain Alide2_4073 PF07683 Cobalamin synthesis protein cobW C-terminal domain Alide2_4075 PF02954 Bacterial regulatory protein, Fis family Alide2_4075 PF00072 Response regulator receiver domain Alide2_4075 PF00158 Sigma-54 interaction domain Alide2_4076 PF00072 Response regulator receiver domain Alide2_4076 PF01339 CheB methylesterase Alide2_4077 PF00072 Response regulator receiver domain Alide2_4077 PF00486 Transcriptional regulatory protein, C terminal Alide2_4078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_4078 PF00989 PAS fold Alide2_4078 PF00512 His Kinase A (phospho-acceptor) domain Alide2_4079 PF00072 Response regulator receiver domain Alide2_4079 PF01339 CheB methylesterase Alide2_4080 PF00486 Transcriptional regulatory protein, C terminal Alide2_4080 PF00072 Response regulator receiver domain Alide2_4081 PF11849 Domain of unknown function (DUF3369) Alide2_4083 PF00072 Response regulator receiver domain Alide2_4083 PF00512 His Kinase A (phospho-acceptor) domain Alide2_4083 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Alide2_4083 PF01627 Hpt domain Alide2_4083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_4083 PF00672 HAMP domain Alide2_4084 PF00672 HAMP domain Alide2_4084 PF02203 Tar ligand binding domain homologue Alide2_4084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_4085 PF02899 Phage integrase, N-terminal SAM-like domain Alide2_4085 PF00589 Phage integrase family Alide2_4087 PF01678 Diaminopimelate epimerase Alide2_4089 PF01479 S4 domain Alide2_4089 PF00849 RNA pseudouridylate synthase Alide2_4091 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_4095 PF03466 LysR substrate binding domain Alide2_4095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4096 PF03328 HpcH/HpaI aldolase/citrate lyase family Alide2_4097 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4098 PF02515 CoA-transferase family III Alide2_4099 PF04909 Amidohydrolase Alide2_4100 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4101 PF12802 MarR family Alide2_4103 PF00378 Enoyl-CoA hydratase/isomerase Alide2_4104 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_4104 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_4104 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_4105 PF13193 AMP-binding enzyme C-terminal domain Alide2_4105 PF00501 AMP-binding enzyme Alide2_4106 PF01012 Electron transfer flavoprotein domain Alide2_4106 PF00766 Electron transfer flavoprotein FAD-binding domain Alide2_4107 PF01012 Electron transfer flavoprotein domain Alide2_4108 PF03060 Nitronate monooxygenase Alide2_4109 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4110 PF02515 CoA-transferase family III Alide2_4112 PF00378 Enoyl-CoA hydratase/isomerase Alide2_4113 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_4113 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_4113 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_4114 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_4114 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_4114 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_4115 PF00108 Thiolase, N-terminal domain Alide2_4115 PF02803 Thiolase, C-terminal domain Alide2_4116 PF00378 Enoyl-CoA hydratase/isomerase Alide2_4116 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide2_4116 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide2_4117 PF03466 LysR substrate binding domain Alide2_4117 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4119 PF13276 HTH-like domain Alide2_4119 PF13333 Integrase core domain Alide2_4119 PF00665 Integrase core domain Alide2_4120 PF01527 Transposase Alide2_4123 PF01435 Peptidase family M48 Alide2_4125 PF01979 Amidohydrolase family Alide2_4127 PF04343 Protein of unknown function, DUF488 Alide2_4128 PF02627 Carboxymuconolactone decarboxylase family Alide2_4129 PF00005 ABC transporter Alide2_4129 PF17755 UvrA DNA-binding domain Alide2_4129 PF17760 UvrA interaction domain Alide2_4130 PF13458 Periplasmic binding protein Alide2_4132 PF13609 Gram-negative porin Alide2_4133 PF00083 Sugar (and other) transporter Alide2_4133 PF08946 Osmosensory transporter coiled coil Alide2_4135 PF00474 Sodium:solute symporter family Alide2_4138 PF01323 DSBA-like thioredoxin domain Alide2_4141 PF00682 HMGL-like Alide2_4142 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Alide2_4143 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_4143 PF00364 Biotin-requiring enzyme Alide2_4143 PF02785 Biotin carboxylase C-terminal domain Alide2_4143 PF00289 Biotin carboxylase, N-terminal domain Alide2_4145 PF00378 Enoyl-CoA hydratase/isomerase Alide2_4146 PF01039 Carboxyl transferase domain Alide2_4147 PF13193 AMP-binding enzyme C-terminal domain Alide2_4147 PF00501 AMP-binding enzyme Alide2_4150 PF05199 GMC oxidoreductase Alide2_4150 PF00732 GMC oxidoreductase Alide2_4151 PF13458 Periplasmic binding protein Alide2_4152 PF02653 Branched-chain amino acid transport system / permease component Alide2_4153 PF00005 ABC transporter Alide2_4153 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_4154 PF00005 ABC transporter Alide2_4155 PF00732 GMC oxidoreductase Alide2_4155 PF05199 GMC oxidoreductase Alide2_4156 PF13193 AMP-binding enzyme C-terminal domain Alide2_4156 PF00501 AMP-binding enzyme Alide2_4157 PF00155 Aminotransferase class I and II Alide2_4158 PF00368 Hydroxymethylglutaryl-coenzyme A reductase Alide2_4159 PF13419 Haloacid dehalogenase-like hydrolase Alide2_4160 PF00360 Phytochrome region Alide2_4160 PF00990 Diguanylate cyclase, GGDEF domain Alide2_4160 PF01590 GAF domain Alide2_4160 PF00563 EAL domain Alide2_4161 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide2_4163 PF08448 PAS fold Alide2_4163 PF00563 EAL domain Alide2_4163 PF00990 Diguanylate cyclase, GGDEF domain Alide2_4168 PF03575 Peptidase family S51 Alide2_4171 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4174 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_4174 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_4174 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_4176 PF02803 Thiolase, C-terminal domain Alide2_4176 PF00108 Thiolase, N-terminal domain Alide2_4177 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Alide2_4178 PF00484 Carbonic anhydrase Alide2_4179 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_4179 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_4179 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_4180 PF13411 MerR HTH family regulatory protein Alide2_4182 PF00072 Response regulator receiver domain Alide2_4182 PF01339 CheB methylesterase Alide2_4183 PF03975 CheD chemotactic sensory transduction Alide2_4184 PF03705 CheR methyltransferase, all-alpha domain Alide2_4184 PF01739 CheR methyltransferase, SAM binding domain Alide2_4185 PF01584 CheW-like domain Alide2_4186 PF01627 Hpt domain Alide2_4186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_4186 PF02895 Signal transducing histidine kinase, homodimeric domain Alide2_4186 PF09078 CheY binding Alide2_4186 PF01584 CheW-like domain Alide2_4187 PF00072 Response regulator receiver domain Alide2_4189 PF07730 Histidine kinase Alide2_4189 PF05384 Sensor protein DegS Alide2_4189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_4190 PF00196 Bacterial regulatory proteins, luxR family Alide2_4190 PF00072 Response regulator receiver domain Alide2_4191 PF01311 Bacterial export proteins, family 1 Alide2_4192 PF01313 Bacterial export proteins, family 3 Alide2_4193 PF00813 FliP family Alide2_4195 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Alide2_4195 PF16973 Flagellar motor switch protein FliN N-terminal Alide2_4196 PF02154 Flagellar motor switch protein FliM Alide2_4196 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Alide2_4200 PF18269 T3SS EscN ATPase C-terminal domain Alide2_4200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Alide2_4202 PF01706 FliG C-terminal domain Alide2_4202 PF14841 FliG middle domain Alide2_4202 PF14842 FliG N-terminal domain Alide2_4203 PF08345 Flagellar M-ring protein C-terminal Alide2_4203 PF01514 Secretory protein of YscJ/FliF family Alide2_4207 PF07196 Flagellin hook IN motif Alide2_4207 PF07195 Flagellar hook-associated protein 2 C-terminus Alide2_4207 PF02465 Flagellar hook-associated protein 2 N-terminus Alide2_4208 PF00669 Bacterial flagellin N-terminal helical region Alide2_4208 PF00700 Bacterial flagellin C-terminal helical region Alide2_4209 PF07196 Flagellin hook IN motif Alide2_4209 PF00700 Bacterial flagellin C-terminal helical region Alide2_4209 PF00669 Bacterial flagellin N-terminal helical region Alide2_4210 PF05045 Rhamnan synthesis protein F Alide2_4210 PF14307 Glycosyltransferase WbsX Alide2_4211 PF03737 Aldolase/RraA Alide2_4212 PF01618 MotA/TolQ/ExbB proton channel family Alide2_4213 PF13677 Membrane MotB of proton-channel complex MotA/MotB Alide2_4213 PF00691 OmpA family Alide2_4214 PF00072 Response regulator receiver domain Alide2_4215 PF04344 Chemotaxis phosphatase, CheZ Alide2_4216 PF01312 FlhB HrpN YscU SpaS Family Alide2_4217 PF00771 FHIPEP family Alide2_4218 PF00448 SRP54-type protein, GTPase domain Alide2_4220 PF04545 Sigma-70, region 4 Alide2_4220 PF04539 Sigma-70 region 3 Alide2_4220 PF04542 Sigma-70 region 2 Alide2_4223 PF13144 Chaperone for flagella basal body P-ring formation Alide2_4224 PF00460 Flagella basal body rod protein Alide2_4225 PF00460 Flagella basal body rod protein Alide2_4225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide2_4226 PF13861 FlgD Tudor-like domain Alide2_4226 PF13860 FlgD Ig-like domain Alide2_4226 PF03963 Flagellar hook capping protein - N-terminal region Alide2_4227 PF00460 Flagella basal body rod protein Alide2_4227 PF07559 Flagellar basal body protein FlaE Alide2_4227 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide2_4228 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide2_4228 PF00460 Flagella basal body rod protein Alide2_4229 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Alide2_4229 PF00460 Flagella basal body rod protein Alide2_4231 PF02119 Flagellar P-ring protein Alide2_4232 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Alide2_4232 PF10135 Rod binding protein Alide2_4234 PF00669 Bacterial flagellin N-terminal helical region Alide2_4236 PF03060 Nitronate monooxygenase Alide2_4237 PF00392 Bacterial regulatory proteins, gntR family Alide2_4237 PF00155 Aminotransferase class I and II Alide2_4239 PF00892 EamA-like transporter family Alide2_4240 PF00155 Aminotransferase class I and II Alide2_4241 PF02567 Phenazine biosynthesis-like protein Alide2_4242 PF00291 Pyridoxal-phosphate dependent enzyme Alide2_4247 PF00990 Diguanylate cyclase, GGDEF domain Alide2_4247 PF01590 GAF domain Alide2_4247 PF00360 Phytochrome region Alide2_4247 PF00563 EAL domain Alide2_4251 PF02633 Creatinine amidohydrolase Alide2_4252 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4254 PF00578 AhpC/TSA family Alide2_4257 PF01208 Uroporphyrinogen decarboxylase (URO-D) Alide2_4258 PF00271 Helicase conserved C-terminal domain Alide2_4258 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Alide2_4258 PF18074 Primosomal protein N C-terminal domain Alide2_4258 PF17764 3′ DNA-binding domain (3′BD) Alide2_4258 PF00270 DEAD/DEAH box helicase Alide2_4259 PF02803 Thiolase, C-terminal domain Alide2_4259 PF00108 Thiolase, N-terminal domain Alide2_4260 PF00378 Enoyl-CoA hydratase/isomerase Alide2_4261 PF00501 AMP-binding enzyme Alide2_4262 PF00005 ABC transporter Alide2_4266 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_4266 PF00005 ABC transporter Alide2_4268 PF03547 Membrane transport protein Alide2_4269 PF00580 UvrD/REP helicase N-terminal domain Alide2_4269 PF13361 UvrD-like helicase C-terminal domain Alide2_4271 PF02253 Phospholipase A1 Alide2_4272 PF03781 Sulfatase-modifying factor enzyme 1 Alide2_4273 PF00884 Sulfatase Alide2_4274 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Alide2_4275 PF01494 FAD binding domain Alide2_4276 PF01557 Fumarylacetoacetate (FAA) hydrolase family Alide2_4277 PF13609 Gram-negative porin Alide2_4278 PF00392 Bacterial regulatory proteins, gntR family Alide2_4278 PF07729 FCD domain Alide2_4280 PF00582 Universal stress protein family Alide2_4281 PF01702 Queuine tRNA-ribosyltransferase Alide2_4285 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4286 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4287 PF03737 Aldolase/RraA Alide2_4289 PF01553 Acyltransferase Alide2_4289 PF00501 AMP-binding enzyme Alide2_4290 PF06480 FtsH Extracellular Alide2_4290 PF00004 ATPase family associated with various cellular activities (AAA) Alide2_4290 PF01434 Peptidase family M41 Alide2_4290 PF17862 AAA+ lid domain Alide2_4291 PF00156 Phosphoribosyl transferase domain Alide2_4292 PF00156 Phosphoribosyl transferase domain Alide2_4292 PF01738 Dienelactone hydrolase family Alide2_4293 PF00156 Phosphoribosyl transferase domain Alide2_4293 PF01738 Dienelactone hydrolase family Alide2_4294 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_4295 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4296 PF13454 FAD-NAD(P)-binding Alide2_4301 PF13350 Tyrosine phosphatase family Alide2_4303 PF13657 HipA N-terminal domain Alide2_4303 PF07804 HipA-like C-terminal domain Alide2_4304 PF01381 Helix-turn-helix Alide2_4309 PF01609 Transposase DDE domain Alide2_4309 PF13006 Insertion element 4 transposase N-terminal Alide2_4313 PF00665 Integrase core domain Alide2_4313 PF13333 Integrase core domain Alide2_4313 PF13276 HTH-like domain Alide2_4314 PF01527 Transposase Alide2_4315 PF00665 Integrase core domain Alide2_4316 PF01695 IstB-like ATP binding protein Alide2_4317 PF00034 Cytochrome c Alide2_4318 PF00890 FAD binding domain Alide2_4320 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide2_4320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Alide2_4321 PF01799 [2Fe-2S] binding domain Alide2_4321 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_4322 PF03450 CO dehydrogenase flavoprotein C-terminal domain Alide2_4322 PF00941 FAD binding domain in molybdopterin dehydrogenase Alide2_4327 PF13478 XdhC Rossmann domain Alide2_4327 PF02625 XdhC and CoxI family Alide2_4328 PF12804 MobA-like NTP transferase domain Alide2_4332 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4333 PF01738 Dienelactone hydrolase family Alide2_4334 PF12806 Acetyl-CoA dehydrogenase C-terminal like Alide2_4334 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_4334 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_4334 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_4335 PF00378 Enoyl-CoA hydratase/isomerase Alide2_4335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alide2_4335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alide2_4336 PF02803 Thiolase, C-terminal domain Alide2_4336 PF00108 Thiolase, N-terminal domain Alide2_4338 PF00501 AMP-binding enzyme Alide2_4338 PF13193 AMP-binding enzyme C-terminal domain Alide2_4339 PF00005 ABC transporter Alide2_4340 PF02653 Branched-chain amino acid transport system / permease component Alide2_4341 PF02653 Branched-chain amino acid transport system / permease component Alide2_4342 PF13407 Periplasmic binding protein domain Alide2_4348 PF00589 Phage integrase family Alide2_4349 PF00589 Phage integrase family Alide2_4349 PF02899 Phage integrase, N-terminal SAM-like domain Alide2_4350 PF14319 Transposase zinc-binding domain Alide2_4350 PF04986 Putative transposase Alide2_4351 PF01196 Ribosomal protein L17 Alide2_4352 PF01000 RNA polymerase Rpb3/RpoA insert domain Alide2_4352 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Alide2_4352 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Alide2_4353 PF00163 Ribosomal protein S4/S9 N-terminal domain Alide2_4353 PF01479 S4 domain Alide2_4354 PF00411 Ribosomal protein S11 Alide2_4355 PF00416 Ribosomal protein S13/S18 Alide2_4356 PF00444 Ribosomal protein L36 Alide2_4357 PF00344 SecY translocase Alide2_4358 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Alide2_4359 PF00327 Ribosomal protein L30p/L7e Alide2_4360 PF03719 Ribosomal protein S5, C-terminal domain Alide2_4360 PF00333 Ribosomal protein S5, N-terminal domain Alide2_4361 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Alide2_4362 PF00347 Ribosomal protein L6 Alide2_4363 PF00410 Ribosomal protein S8 Alide2_4364 PF00253 Ribosomal protein S14p/S29e Alide2_4365 PF00673 ribosomal L5P family C-terminus Alide2_4365 PF00281 Ribosomal protein L5 Alide2_4366 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Alide2_4367 PF00238 Ribosomal protein L14p/L23e Alide2_4368 PF01266 FAD dependent oxidoreductase Alide2_4368 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Alide2_4369 PF08220 DeoR-like helix-turn-helix domain Alide2_4369 PF00455 DeoR C terminal sensor domain Alide2_4370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Alide2_4370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Alide2_4371 PF14748 Pyrroline-5-carboxylate reductase dimerisation Alide2_4371 PF03807 NADP oxidoreductase coenzyme F420-dependent Alide2_4373 PF01040 UbiA prenyltransferase family Alide2_4375 PF00210 Ferritin-like domain Alide2_4376 PF03466 LysR substrate binding domain Alide2_4376 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4377 PF00270 DEAD/DEAH box helicase Alide2_4377 PF00271 Helicase conserved C-terminal domain Alide2_4377 PF17191 RecG wedge domain Alide2_4378 PF11871 Domain of unknown function (DUF3391) Alide2_4378 PF01966 HD domain Alide2_4379 PF02547 Queuosine biosynthesis protein Alide2_4382 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4383 PF03466 LysR substrate binding domain Alide2_4383 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4384 PF03167 Uracil DNA glycosylase superfamily Alide2_4385 PF00218 Indole-3-glycerol phosphate synthase Alide2_4387 PF02885 Glycosyl transferase family, helical bundle domain Alide2_4387 PF00591 Glycosyl transferase family, a/b domain Alide2_4388 PF00117 Glutamine amidotransferase class-I Alide2_4389 PF13276 HTH-like domain Alide2_4389 PF13333 Integrase core domain Alide2_4389 PF00665 Integrase core domain Alide2_4390 PF01527 Transposase Alide2_4395 PF00425 chorismate binding enzyme Alide2_4395 PF04715 Anthranilate synthase component I, N terminal region Alide2_4396 PF00672 HAMP domain Alide2_4396 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_4396 PF02203 Tar ligand binding domain homologue Alide2_4397 PF00990 Diguanylate cyclase, GGDEF domain Alide2_4397 PF00563 EAL domain Alide2_4397 PF03707 Bacterial signalling protein N terminal repeat Alide2_4398 PF13419 Haloacid dehalogenase-like hydrolase Alide2_4400 PF00834 Ribulose-phosphate 3 epimerase family Alide2_4401 PF04379 ApaG domain Alide2_4404 PF04107 Glutamate-cysteine ligase family 2(GCS2) Alide2_4405 PF02769 AIR synthase related protein, C-terminal domain Alide2_4405 PF00586 AIR synthase related protein, N-terminal domain Alide2_4408 PF12019 Type II transport protein GspH Alide2_4412 PF05567 Neisseria PilC beta-propeller domain Alide2_4413 PF08361 MAATS-type transcriptional repressor, C-terminal region Alide2_4413 PF00440 Bacterial regulatory proteins, tetR family Alide2_4414 PF00561 alpha/beta hydrolase fold Alide2_4414 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Alide2_4416 PF02321 Outer membrane efflux protein Alide2_4417 PF13533 Biotin-lipoyl like Alide2_4418 PF00005 ABC transporter Alide2_4420 PF01515 Phosphate acetyl/butaryl transferase Alide2_4421 PF00871 Acetokinase family Alide2_4422 PF04608 Phosphatidylglycerophosphatase A Alide2_4423 PF02464 Competence-damaged protein Alide2_4424 PF02203 Tar ligand binding domain homologue Alide2_4424 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_4424 PF00672 HAMP domain Alide2_4425 PF03707 Bacterial signalling protein N terminal repeat Alide2_4425 PF00990 Diguanylate cyclase, GGDEF domain Alide2_4425 PF00563 EAL domain Alide2_4426 PF03861 ANTAR domain Alide2_4426 PF00072 Response regulator receiver domain Alide2_4427 PF13426 PAS domain Alide2_4427 PF07536 HWE histidine kinase Alide2_4428 PF02810 SEC-C motif Alide2_4428 PF03695 Uncharacterised protein family (UPF0149) Alide2_4431 PF02926 THUMP domain Alide2_4431 PF01170 Putative RNA methylase family UPF0020 Alide2_4432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_4432 PF00672 HAMP domain Alide2_4432 PF02743 Cache domain Alide2_4434 PF00309 Sigma-54 factor, Activator interacting domain (AID) Alide2_4434 PF04963 Sigma-54 factor, core binding domain Alide2_4434 PF04552 Sigma-54, DNA binding domain Alide2_4435 PF00005 ABC transporter Alide2_4437 PF00085 Thioredoxin Alide2_4437 PF01323 DSBA-like thioredoxin domain Alide2_4439 PF00750 tRNA synthetases class I (R) Alide2_4439 PF03485 Arginyl tRNA synthetase N terminal domain Alide2_4439 PF05746 DALR anticodon binding domain Alide2_4442 PF00375 Sodium:dicarboxylate symporter family Alide2_4443 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_4443 PF00512 His Kinase A (phospho-acceptor) domain Alide2_4444 PF00072 Response regulator receiver domain Alide2_4444 PF00196 Bacterial regulatory proteins, luxR family Alide2_4445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4445 PF03466 LysR substrate binding domain Alide2_4446 PF01274 Malate synthase Alide2_4448 PF01361 Tautomerase enzyme Alide2_4450 PF13230 Glutamine amidotransferases class-II Alide2_4451 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Alide2_4451 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Alide2_4452 PF03594 Benzoate membrane transport protein Alide2_4453 PF02705 K+ potassium transporter Alide2_4455 PF02386 Cation transport protein Alide2_4456 PF02254 TrkA-N domain Alide2_4456 PF02080 TrkA-C domain Alide2_4457 PF00171 Aldehyde dehydrogenase family Alide2_4462 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Alide2_4462 PF06144 DNA polymerase III, delta subunit Alide2_4464 PF08264 Anticodon-binding domain of tRNA Alide2_4464 PF13603 Leucyl-tRNA synthetase, Domain 2 Alide2_4464 PF00133 tRNA synthetases class I (I, L, M and V) Alide2_4464 PF09334 tRNA synthetases class I (M) Alide2_4465 PF00924 Mechanosensitive ion channel Alide2_4466 PF00171 Aldehyde dehydrogenase family Alide2_4468 PF00158 Sigma-54 interaction domain Alide2_4468 PF01590 GAF domain Alide2_4468 PF02954 Bacterial regulatory protein, Fis family Alide2_4470 PF00563 EAL domain Alide2_4470 PF13426 PAS domain Alide2_4470 PF00990 Diguanylate cyclase, GGDEF domain Alide2_4471 PF02472 Biopolymer transport protein ExbD/TolR Alide2_4472 PF01618 MotA/TolQ/ExbB proton channel family Alide2_4474 PF04355 SmpA / OmlA family Alide2_4475 PF01475 Ferric uptake regulator family Alide2_4476 PF02603 HPr Serine kinase N terminus Alide2_4476 PF07475 HPr Serine kinase C-terminal domain Alide2_4477 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Alide2_4478 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Alide2_4479 PF01259 SAICAR synthetase Alide2_4480 PF00085 Thioredoxin Alide2_4481 PF00731 AIR carboxylase Alide2_4482 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Alide2_4482 PF02222 ATP-grasp domain Alide2_4483 PF03481 Putative GTP-binding controlling metal-binding Alide2_4483 PF01300 Telomere recombination Alide2_4485 PF03922 OmpW family Alide2_4487 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Alide2_4488 PF00814 Glycoprotease family Alide2_4491 PF01544 CorA-like Mg2+ transporter protein Alide2_4494 PF01048 Phosphorylase superfamily Alide2_4495 PF00501 AMP-binding enzyme Alide2_4495 PF13193 AMP-binding enzyme C-terminal domain Alide2_4496 PF02233 NAD(P) transhydrogenase beta subunit Alide2_4497 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Alide2_4497 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Alide2_4497 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Alide2_4499 PF01116 Fructose-bisphosphate aldolase class-II Alide2_4500 PF00224 Pyruvate kinase, barrel domain Alide2_4500 PF02887 Pyruvate kinase, alpha/beta domain Alide2_4501 PF00557 Metallopeptidase family M24 Alide2_4501 PF05195 Aminopeptidase P, N-terminal domain Alide2_4502 PF00378 Enoyl-CoA hydratase/isomerase Alide2_4503 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4504 PF02515 CoA-transferase family III Alide2_4507 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4508 PF03466 LysR substrate binding domain Alide2_4508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4509 PF00483 Nucleotidyl transferase Alide2_4510 PF00456 Transketolase, thiamine diphosphate binding domain Alide2_4510 PF02780 Transketolase, C-terminal domain Alide2_4510 PF02779 Transketolase, pyrimidine binding domain Alide2_4511 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Alide2_4511 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Alide2_4513 PF07722 Peptidase C26 Alide2_4514 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4514 PF03466 LysR substrate binding domain Alide2_4515 PF04909 Amidohydrolase Alide2_4521 PF07715 TonB-dependent Receptor Plug Domain Alide2_4521 PF00593 TonB dependent receptor Alide2_4523 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4526 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4526 PF03466 LysR substrate binding domain Alide2_4528 PF00106 short chain dehydrogenase Alide2_4534 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4535 PF13607 Succinyl-CoA ligase like flavodoxin domain Alide2_4535 PF00583 Acetyltransferase (GNAT) family Alide2_4535 PF13380 CoA binding domain Alide2_4536 PF02798 Glutathione S-transferase, N-terminal domain Alide2_4539 PF01131 DNA topoisomerase Alide2_4539 PF01751 Toprim domain Alide2_4541 PF08279 HTH domain Alide2_4541 PF02237 Biotin protein ligase C terminal domain Alide2_4541 PF03099 Biotin/lipoate A/B protein ligase family Alide2_4543 PF08240 Alcohol dehydrogenase GroES-like domain Alide2_4543 PF00107 Zinc-binding dehydrogenase Alide2_4545 PF13452 N-terminal half of MaoC dehydratase Alide2_4547 PF13193 AMP-binding enzyme C-terminal domain Alide2_4547 PF00501 AMP-binding enzyme Alide2_4547 PF16177 Acetyl-coenzyme A synthetase N-terminus Alide2_4548 PF12802 MarR family Alide2_4552 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4553 PF08521 Two-component sensor kinase N-terminal Alide2_4553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_4553 PF00512 His Kinase A (phospho-acceptor) domain Alide2_4554 PF00072 Response regulator receiver domain Alide2_4554 PF00486 Transcriptional regulatory protein, C terminal Alide2_4555 PF00266 Aminotransferase class-V Alide2_4556 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_4557 PF00005 ABC transporter Alide2_4560 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Alide2_4561 PF00171 Aldehyde dehydrogenase family Alide2_4563 PF01266 FAD dependent oxidoreductase Alide2_4564 PF00842 Alanine racemase, C-terminal domain Alide2_4564 PF01168 Alanine racemase, N-terminal domain Alide2_4565 PF01266 FAD dependent oxidoreductase Alide2_4566 PF01037 Lrp/AsnC ligand binding domain Alide2_4568 PF00154 recA bacterial DNA recombination protein Alide2_4569 PF02631 RecX family Alide2_4571 PF02355 Protein export membrane protein Alide2_4571 PF07549 SecD/SecF GG Motif Alide2_4572 PF02355 Protein export membrane protein Alide2_4572 PF07549 SecD/SecF GG Motif Alide2_4572 PF13721 SecD export protein N-terminal TM region Alide2_4573 PF02699 Preprotein translocase subunit Alide2_4575 PF01037 Lrp/AsnC ligand binding domain Alide2_4576 PF05977 Transmembrane secretion effector Alide2_4577 PF06725 3D domain Alide2_4577 PF03562 MltA specific insert domain Alide2_4578 PF00691 OmpA family Alide2_4578 PF04972 BON domain Alide2_4579 PF00196 Bacterial regulatory proteins, luxR family Alide2_4579 PF00072 Response regulator receiver domain Alide2_4580 PF00989 PAS fold Alide2_4580 PF00512 His Kinase A (phospho-acceptor) domain Alide2_4580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_4581 PF00795 Carbon-nitrogen hydrolase Alide2_4583 PF03710 Glutamate-ammonia ligase adenylyltransferase Alide2_4583 PF08335 GlnD PII-uridylyltransferase Alide2_4584 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_4585 PF00873 AcrB/AcrD/AcrF family Alide2_4586 PF13417 Glutathione S-transferase, N-terminal domain Alide2_4586 PF00043 Glutathione S-transferase, C-terminal domain Alide2_4587 PF08328 Adenylosuccinate lyase C-terminal Alide2_4587 PF00206 Lyase Alide2_4588 PF07152 YaeQ protein Alide2_4591 PF03741 Integral membrane protein TerC family Alide2_4593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4593 PF03466 LysR substrate binding domain Alide2_4595 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV Alide2_4596 PF01435 Peptidase family M48 Alide2_4596 PF13181 Tetratricopeptide repeat Alide2_4597 PF01967 MoaC family Alide2_4600 PF07963 Prokaryotic N-terminal methylation motif Alide2_4600 PF00114 Pilin (bacterial filament) Alide2_4601 PF00753 Metallo-beta-lactamase superfamily Alide2_4601 PF12706 Beta-lactamase superfamily domain Alide2_4602 PF16697 Inner membrane component of T3SS, cytoplasmic domain Alide2_4604 PF03741 Integral membrane protein TerC family Alide2_4605 PF00549 CoA-ligase Alide2_4605 PF02629 CoA binding domain Alide2_4606 PF00549 CoA-ligase Alide2_4606 PF08442 ATP-grasp domain Alide2_4607 PF01118 Semialdehyde dehydrogenase, NAD binding domain Alide2_4608 PF02481 DNA recombination-mediator protein A Alide2_4608 PF17782 DprA winged helix domain Alide2_4610 PF01327 Polypeptide deformylase Alide2_4612 PF02911 Formyl transferase, C-terminal domain Alide2_4612 PF00551 Formyl transferase Alide2_4615 PF00162 Phosphoglycerate kinase Alide2_4618 PF00892 EamA-like transporter family Alide2_4619 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Alide2_4621 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4623 PF00672 HAMP domain Alide2_4623 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Alide2_4623 PF02203 Tar ligand binding domain homologue Alide2_4624 PF17755 UvrA DNA-binding domain Alide2_4624 PF17760 UvrA interaction domain Alide2_4625 PF07690 Major Facilitator Superfamily Alide2_4626 PF00436 Single-strand binding protein family Alide2_4627 PF02652 L-lactate permease Alide2_4629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4629 PF03466 LysR substrate binding domain Alide2_4630 PF04303 PrpF protein Alide2_4631 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4632 PF13609 Gram-negative porin Alide2_4633 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4633 PF03466 LysR substrate binding domain Alide2_4634 PF04205 FMN-binding domain Alide2_4634 PF00890 FAD binding domain Alide2_4636 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4637 PF02954 Bacterial regulatory protein, Fis family Alide2_4637 PF00072 Response regulator receiver domain Alide2_4637 PF00158 Sigma-54 interaction domain Alide2_4638 PF01039 Carboxyl transferase domain Alide2_4639 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4641 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Alide2_4641 PF00289 Biotin carboxylase, N-terminal domain Alide2_4641 PF02785 Biotin carboxylase C-terminal domain Alide2_4642 PF00364 Biotin-requiring enzyme Alide2_4649 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4650 PF02515 CoA-transferase family III Alide2_4652 PF13193 AMP-binding enzyme C-terminal domain Alide2_4652 PF00501 AMP-binding enzyme Alide2_4653 PF00677 Lumazine binding domain Alide2_4654 PF01810 LysE type translocator Alide2_4655 PF00512 His Kinase A (phospho-acceptor) domain Alide2_4655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_4655 PF00672 HAMP domain Alide2_4655 PF16527 Two-component sensor protein CpxA, periplasmic domain Alide2_4656 PF00072 Response regulator receiver domain Alide2_4656 PF00486 Transcriptional regulatory protein, C terminal Alide2_4659 PF00970 Oxidoreductase FAD-binding domain Alide2_4659 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_4659 PF00175 Oxidoreductase NAD-binding domain Alide2_4660 PF01292 Prokaryotic cytochrome b561 Alide2_4663 PF00175 Oxidoreductase NAD-binding domain Alide2_4663 PF00111 2Fe-2S iron-sulfur cluster binding domain Alide2_4663 PF00970 Oxidoreductase FAD-binding domain Alide2_4664 PF02424 ApbE family Alide2_4667 PF00690 Cation transporter/ATPase, N-terminus Alide2_4667 PF00689 Cation transporting ATPase, C-terminus Alide2_4670 PF03060 Nitronate monooxygenase Alide2_4671 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4672 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_4672 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_4672 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_4673 PF09339 IclR helix-turn-helix domain Alide2_4673 PF01614 Bacterial transcriptional regulator Alide2_4674 PF02515 CoA-transferase family III Alide2_4677 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Alide2_4677 PF02770 Acyl-CoA dehydrogenase, middle domain Alide2_4677 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Alide2_4678 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4679 PF09339 IclR helix-turn-helix domain Alide2_4680 PF02515 CoA-transferase family III Alide2_4681 PF03466 LysR substrate binding domain Alide2_4681 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4682 PF03401 Tripartite tricarboxylate transporter family receptor Alide2_4692 PF03466 LysR substrate binding domain Alide2_4692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4693 PF00202 Aminotransferase class-III Alide2_4694 PF00171 Aldehyde dehydrogenase family Alide2_4695 PF00990 Diguanylate cyclase, GGDEF domain Alide2_4695 PF05230 MASE2 domain Alide2_4696 PF00392 Bacterial regulatory proteins, gntR family Alide2_4696 PF07729 FCD domain Alide2_4698 PF02653 Branched-chain amino acid transport system / permease component Alide2_4699 PF11862 Domain of unknown function (DUF3382) Alide2_4699 PF02653 Branched-chain amino acid transport system / permease component Alide2_4700 PF12399 Branched-chain amino acid ATP-binding cassette transporter Alide2_4700 PF00005 ABC transporter Alide2_4701 PF00005 ABC transporter Alide2_4702 PF07687 Peptidase dimerisation domain Alide2_4702 PF01546 Peptidase family M20/M25/M40 Alide2_4703 PF07364 Metallopeptidase family M81 Alide2_4703 PF07171 MlrC C-terminus Alide2_4704 PF01515 Phosphate acetyl/butaryl transferase Alide2_4704 PF03949 Malic enzyme, NAD binding domain Alide2_4704 PF00390 Malic enzyme, N-terminal domain Alide2_4705 PF00545 ribonuclease Alide2_4707 PF00398 Ribosomal RNA adenine dimethylase Alide2_4708 PF00639 PPIC-type PPIASE domain Alide2_4708 PF09312 SurA N-terminal domain Alide2_4709 PF04453 LPS transport system D Alide2_4710 PF01636 Phosphotransferase enzyme family Alide2_4711 PF04452 RNA methyltransferase Alide2_4714 PF02463 RecF/RecN/SMC N terminal domain Alide2_4714 PF06470 SMC proteins Flexible Hinge Domain Alide2_4716 PF03707 Bacterial signalling protein N terminal repeat Alide2_4716 PF00563 EAL domain Alide2_4716 PF00990 Diguanylate cyclase, GGDEF domain Alide2_4717 PF08241 Methyltransferase domain Alide2_4718 PF00561 alpha/beta hydrolase fold Alide2_4719 PF01169 Uncharacterized protein family UPF0016 Alide2_4720 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Alide2_4721 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Alide2_4722 PF00106 short chain dehydrogenase Alide2_4725 PF01380 SIS domain Alide2_4725 PF00571 CBS domain Alide2_4726 PF02254 TrkA-N domain Alide2_4726 PF02080 TrkA-C domain Alide2_4726 PF00999 Sodium/hydrogen exchanger family Alide2_4727 PF00156 Phosphoribosyl transferase domain Alide2_4730 PF12631 MnmE helical domain Alide2_4730 PF01926 50S ribosome-binding GTPase Alide2_4730 PF10396 GTP-binding protein TrmE N-terminus Alide2_4731 PF00497 Bacterial extracellular solute-binding proteins, family 3 Alide2_4732 PF01266 FAD dependent oxidoreductase Alide2_4733 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Alide2_4733 PF03466 LysR substrate binding domain Alide2_4736 PF03576 Peptidase family S58 Alide2_4737 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_4737 PF12911 N-terminal TM domain of oligopeptide transport permease C Alide2_4738 PF00528 Binding-protein-dependent transport system inner membrane component Alide2_4739 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide2_4740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Alide2_4740 PF00005 ABC transporter Alide2_4741 PF01112 Asparaginase Alide2_4745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Alide2_4746 PF14849 YidC periplasmic domain Alide2_4746 PF02096 60Kd inner membrane protein Alide2_4747 PF01809 Putative membrane protein insertion efficiency factor Alide2_4748 PF00825 Ribonuclease P Alide2_4749 PF00468 Ribosomal protein L34 Alide2_4753 PF18272 single-stranded DNA binding TraI N-terminal subdomain Alide2_4753 PF07057 DNA helicase TraI Alide2_4753 PF18340 DNA relaxase TraI 2B/2B-like domain Alide2_4753 PF08751 TrwC relaxase Alide2_4757 PF07730 Histidine kinase Alide2_4757 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Alide2_4757 PF00672 HAMP domain Alide2_4757 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Alide2_4758 PF00196 Bacterial regulatory proteins, luxR family Alide2_4758 PF00072 Response regulator receiver domain Alide2_4759 PF01464 Transglycosylase SLT domain Alide2_4766 PF10411 Disulfide bond isomerase protein N-terminus Alide2_4766 PF13098 Thioredoxin-like domain Alide2_4769 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer Alide2_4773 PF06834 TraU protein Alide2_4776 PF06986 Type-1V conjugative transfer system mating pair stabilisation Alide2_4782 PF01435 Peptidase family M48 Alide2_4789 PF17841 BID domain of Bartonella effector protein (Bep) Alide2_4789 PF02661 Fic/DOC family Alide2_4795 PF00216 Bacterial DNA-binding protein Alide2_4801 PF01966 HD domain Alide2_4804 PF10410 DnaB-helicase binding domain of primase Alide2_4804 PF01807 CHC2 zinc finger Alide2_4804 PF08275 DNA primase catalytic core, N-terminal domain Alide2_4804 PF08278 DNA primase DnaG DnaB-binding Alide2_4806 PF13614 AAA domain Alide2_4807 PF02195 ParB-like nuclease domain Alide2_4809 PF05973 Phage derived protein Gp49-like (DUF891) Alide2_4811 PF10134 Replication initiator protein A Alide2_4812 PF11740 Plasmid replication region DNA-binding N-term Alide2_4815 PF00145 C-5 cytosine-specific DNA methylase Alide2_4817 PF02321 Outer membrane efflux protein Alide2_4818 PF00873 AcrB/AcrD/AcrF family Alide2_4819 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Alide2_4822 PF00436 Single-strand binding protein family Alide2_4824 PF06067 Domain of unknown function (DUF932) Alide2_4831 PF04002 RadC-like JAB domain Alide2_4835 PF02796 Helix-turn-helix domain of resolvase Alide2_4835 PF00239 Resolvase, N terminal domain