Alide2_0001 SM00382 ATPases associated with a variety of cellular activities Alide2_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Alide2_0002 SM00480 DNA polymerase III beta subunit Alide2_0003 SM00387 Histidine kinase-like ATPases Alide2_0003 SM00433 TopoisomeraseII Alide2_0005 SM00530 Helix-turn-helix XRE-family like proteins Alide2_0015 SM00878 Biotin carboxylase C-terminal domain Alide2_0015 SM01209 Alide2_0015 Alide2_0021 SM00487 DEAD-like helicases superfamily Alide2_0021 SM00491 Alide2_0021 Alide2_0022 SM00479 Alide2_0022 Alide2_0025 SM00052 Putative diguanylate phosphodiesterase Alide2_0025 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Alide2_0025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_0025 SM00091 PAS domain Alide2_0025 SM00267 diguanylate cyclase Alide2_0026 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_0031 SM00881 CoA binding domain Alide2_0033 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_0040 SM00422 helix_turn_helix, mercury resistance Alide2_0043 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_0043 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_0047 SM00448 cheY-homologous receiver domain Alide2_0047 SM00862 Transcriptional regulatory protein, C terminal Alide2_0048 SM00387 Histidine kinase-like ATPases Alide2_0048 SM00388 His Kinase A (phosphoacceptor) domain Alide2_0053 SM01228 Alide2_0053 Alide2_0059 SM00470 ParB-like nuclease domain Alide2_0062 SM00342 helix_turn_helix, arabinose operon control protein Alide2_0095 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Alide2_0096 SM00903 Flavin reductase like domain Alide2_0107 SM00831 Cation transporter/ATPase, N-terminus Alide2_0113 SM00341 Helicase and RNase D C-terminal Alide2_0113 SM00487 DEAD-like helicases superfamily Alide2_0113 SM00490 helicase superfamily c-terminal domain Alide2_0113 SM00956 Alide2_0113 Alide2_0117 SM00052 Putative diguanylate phosphodiesterase Alide2_0117 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_0117 SM00091 PAS domain Alide2_0117 SM00267 diguanylate cyclase Alide2_0120 SM00382 ATPases associated with a variety of cellular activities Alide2_0132 SM00822 Alide2_0132 Alide2_0136 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_0143 SM00822 Alide2_0143 Alide2_0145 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_0153 SM00822 Alide2_0153 Alide2_0160 SM00829 Enoylreductase Alide2_0174 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_0181 SM00878 Biotin carboxylase C-terminal domain Alide2_0190 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide2_0193 SM01018 B12 binding domain Alide2_0202 SM00382 ATPases associated with a variety of cellular activities Alide2_0210 SM00382 ATPases associated with a variety of cellular activities Alide2_0211 SM00645 Papain family cysteine protease Alide2_0214 SM00382 ATPases associated with a variety of cellular activities Alide2_0216 SM00938 Nitrogen regulatory protein P-II Alide2_0221 SM00382 ATPases associated with a variety of cellular activities Alide2_0230 SM00881 CoA binding domain Alide2_0234 SM00945 ProQ/FINO family Alide2_0237 SM01005 Alanine racemase, C-terminal domain Alide2_0240 SM00382 ATPases associated with a variety of cellular activities Alide2_0260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_0260 SM00387 Histidine kinase-like ATPases Alide2_0260 SM00388 His Kinase A (phosphoacceptor) domain Alide2_0261 SM00448 cheY-homologous receiver domain Alide2_0261 SM00862 Transcriptional regulatory protein, C terminal Alide2_0263 SM00342 helix_turn_helix, arabinose operon control protein Alide2_0268 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_0268 SM00895 Alide2_0268 Alide2_0269 SM00382 ATPases associated with a variety of cellular activities Alide2_0269 SM00989 Alide2_0269 Alide2_0283 SM00859 Semialdehyde dehydrogenase, NAD binding domain Alide2_0288 SM00849 Metallo-beta-lactamase superfamily Alide2_0289 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_0302 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_0308 SM00382 ATPases associated with a variety of cellular activities Alide2_0309 SM00382 ATPases associated with a variety of cellular activities Alide2_0311 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_0311 SM00895 Alide2_0311 Alide2_0318 SM00845 GatB domain Alide2_0329 SM00382 ATPases associated with a variety of cellular activities Alide2_0342 SM00347 helix_turn_helix multiple antibiotic resistance protein Alide2_0344 SM01004 Delta-aminolevulinic acid dehydratase Alide2_0350 SM00936 Penicillin-binding protein 5, C-terminal domain Alide2_0353 SM00838 Elongation factor G C-terminus Alide2_0353 SM00889 Elongation factor G, domain IV Alide2_0355 SM01403 Alide2_0355 Alide2_0359 SM01382 Alide2_0359 Alide2_0359 SM01383 Alide2_0359 Alide2_0362 SM00322 K homology RNA-binding domain Alide2_0374 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide2_0384 SM00382 ATPases associated with a variety of cellular activities Alide2_0404 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Alide2_0404 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Alide2_0405 SM00649 Ribosomal protein L11/L12 Alide2_0410 SM00663 RNA polymerase I subunit A N-terminus Alide2_0414 SM00091 PAS domain Alide2_0414 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_0414 SM00387 Histidine kinase-like ATPases Alide2_0414 SM00388 His Kinase A (phosphoacceptor) domain Alide2_0415 SM00448 cheY-homologous receiver domain Alide2_0429 SM00400 zinc finger Alide2_0446 SM00749 bacterial OsmY and nodulation domain Alide2_0449 SM00100 Cyclic nucleotide-monophosphate binding domain Alide2_0458 SM00052 Putative diguanylate phosphodiesterase Alide2_0458 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_0458 SM00091 PAS domain Alide2_0458 SM00267 diguanylate cyclase Alide2_0461 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_0461 SM00387 Histidine kinase-like ATPases Alide2_0462 SM00421 helix_turn_helix, Lux Regulon Alide2_0462 SM00448 cheY-homologous receiver domain Alide2_0465 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide2_0470 SM00947 Carbonic anhydrase Alide2_0477 SM00028 Tetratricopeptide repeats Alide2_0478 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide2_0498 SM00382 ATPases associated with a variety of cellular activities Alide2_0502 SM00382 ATPases associated with a variety of cellular activities Alide2_0504 SM00382 ATPases associated with a variety of cellular activities Alide2_0506 SM00100 Cyclic nucleotide-monophosphate binding domain Alide2_0506 SM00419 helix_turn_helix, cAMP Regulatory protein Alide2_0507 SM00363 S4 RNA-binding domain Alide2_0508 SM00387 Histidine kinase-like ATPases Alide2_0512 SM00220 Serine/Threonine protein kinases, catalytic domain Alide2_0523 SM00903 Flavin reductase like domain Alide2_0524 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_0530 SM00382 ATPases associated with a variety of cellular activities Alide2_0533 SM00052 Putative diguanylate phosphodiesterase Alide2_0533 SM00091 PAS domain Alide2_0533 SM00267 diguanylate cyclase Alide2_0540 SM00829 Enoylreductase Alide2_0544 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Alide2_0549 SM00382 ATPases associated with a variety of cellular activities Alide2_0553 SM01119 Alide2_0553 Alide2_0554 SM00855 Phosphoglycerate mutase family Alide2_0557 SM00905 Dihydroneopterin aldolase Alide2_0558 SM00905 Dihydroneopterin aldolase Alide2_0569 SM00382 ATPases associated with a variety of cellular activities Alide2_0579 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Alide2_0582 SM00849 Metallo-beta-lactamase superfamily Alide2_0585 SM00825 Beta-ketoacyl synthase Alide2_0588 SM01091 Transporter associated domain Alide2_0590 SM00344 helix_turn_helix ASNC type Alide2_0594 SM00861 Transketolase, pyrimidine binding domain Alide2_0600 SM00563 Phosphate acyltransferases Alide2_0602 SM00450 Rhodanese Homology Domain Alide2_0603 SM00257 Lysin motif Alide2_0627 SM00382 ATPases associated with a variety of cellular activities Alide2_0643 SM00382 ATPases associated with a variety of cellular activities Alide2_0649 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_0652 SM00382 ATPases associated with a variety of cellular activities Alide2_0657 SM00996 S-adenosyl-L-homocysteine hydrolase Alide2_0657 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Alide2_0668 SM00363 S4 RNA-binding domain Alide2_0671 SM00387 Histidine kinase-like ATPases Alide2_0673 SM00271 DnaJ molecular chaperone homology domain Alide2_0674 SM00344 helix_turn_helix ASNC type Alide2_0676 SM00382 ATPases associated with a variety of cellular activities Alide2_0684 SM00448 cheY-homologous receiver domain Alide2_0684 SM00862 Transcriptional regulatory protein, C terminal Alide2_0685 SM00387 Histidine kinase-like ATPases Alide2_0685 SM00388 His Kinase A (phosphoacceptor) domain Alide2_0687 SM00327 von Willebrand factor (vWF) type A domain Alide2_0693 SM00382 ATPases associated with a variety of cellular activities Alide2_0711 SM00984 UDP binding domain Alide2_0720 SM00387 Histidine kinase-like ATPases Alide2_0720 SM00388 His Kinase A (phosphoacceptor) domain Alide2_0721 SM00382 ATPases associated with a variety of cellular activities Alide2_0721 SM00448 cheY-homologous receiver domain Alide2_0722 SM00028 Tetratricopeptide repeats Alide2_0737 SM01209 Alide2_0737 Alide2_0739 SM00382 ATPases associated with a variety of cellular activities Alide2_0742 SM00838 Elongation factor G C-terminus Alide2_0742 SM00889 Elongation factor G, domain IV Alide2_0747 SM00382 ATPases associated with a variety of cellular activities Alide2_0758 SM00855 Phosphoglycerate mutase family Alide2_0768 SM00382 ATPases associated with a variety of cellular activities Alide2_0769 SM00382 ATPases associated with a variety of cellular activities Alide2_0775 SM00883 Chaperonin 10 Kd subunit Alide2_0783 SM01329 Alide2_0783 Alide2_0791 SM00849 Metallo-beta-lactamase superfamily Alide2_0794 SM01219 Alide2_0794 Alide2_0800 SM00965 Secretin and TonB N terminus short domain Alide2_0803 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide2_0809 SM01321 Alide2_0809 Alide2_0812 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_0812 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Alide2_0814 SM00382 ATPases associated with a variety of cellular activities Alide2_0818 SM00382 ATPases associated with a variety of cellular activities Alide2_0824 SM00091 PAS domain Alide2_0824 SM00267 diguanylate cyclase Alide2_0825 SM00382 ATPases associated with a variety of cellular activities Alide2_0855 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide2_0865 SM00957 SecA DEAD-like domain Alide2_0865 SM00958 SecA preprotein cross-linking domain Alide2_0874 SM00382 ATPases associated with a variety of cellular activities Alide2_0876 SM00530 Helix-turn-helix XRE-family like proteins Alide2_0878 SM00530 Helix-turn-helix XRE-family like proteins Alide2_0881 SM00382 ATPases associated with a variety of cellular activities Alide2_0892 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Alide2_0896 SM01091 Transporter associated domain Alide2_0897 SM00382 ATPases associated with a variety of cellular activities Alide2_0900 SM00937 Alide2_0900 Alide2_0908 SM00382 ATPases associated with a variety of cellular activities Alide2_0917 SM00978 Alide2_0917 Alide2_0921 SM00834 Putative regulatory protein Alide2_0928 SM01034 Sensors of blue-light using FAD Alide2_0930 SM00387 Histidine kinase-like ATPases Alide2_0930 SM00388 His Kinase A (phosphoacceptor) domain Alide2_0931 SM00421 helix_turn_helix, Lux Regulon Alide2_0931 SM00448 cheY-homologous receiver domain Alide2_0938 SM00382 ATPases associated with a variety of cellular activities Alide2_0939 SM00382 ATPases associated with a variety of cellular activities Alide2_0945 SM01400 Alide2_0945 Alide2_0948 SM00028 Tetratricopeptide repeats Alide2_0949 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Alide2_0949 SM01232 Alide2_0949 Alide2_0951 SM00478 endonuclease III Alide2_0951 SM00525 Alide2_0951 Alide2_0967 SM00387 Histidine kinase-like ATPases Alide2_0967 SM00388 His Kinase A (phosphoacceptor) domain Alide2_0968 SM00448 cheY-homologous receiver domain Alide2_0968 SM00862 Transcriptional regulatory protein, C terminal Alide2_0971 SM00829 Enoylreductase Alide2_0973 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_0974 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_0974 SM00895 Alide2_0974 Alide2_0979 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Alide2_0982 SM01130 Alide2_0982 Alide2_0984 SM00382 ATPases associated with a variety of cellular activities Alide2_0984 SM00962 SRP54-type protein, GTPase domain Alide2_0984 SM00963 SRP54-type protein, helical bundle domain Alide2_0989 SM00749 bacterial OsmY and nodulation domain Alide2_0992 SM00387 Histidine kinase-like ATPases Alide2_0993 SM00421 helix_turn_helix, Lux Regulon Alide2_0993 SM00448 cheY-homologous receiver domain Alide2_0994 SM00448 cheY-homologous receiver domain Alide2_0996 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide2_0996 SM00245 tail specific protease Alide2_0997 SM00855 Phosphoglycerate mutase family Alide2_0998 SM00450 Rhodanese Homology Domain Alide2_1016 SM00342 helix_turn_helix, arabinose operon control protein Alide2_1024 SM00342 helix_turn_helix, arabinose operon control protein Alide2_1028 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_1033 SM00450 Rhodanese Homology Domain Alide2_1042 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_1042 SM00866 Alide2_1042 Alide2_1045 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide2_1046 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide2_1052 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide2_1063 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_1063 SM00866 Alide2_1063 Alide2_1068 SM00463 Small MutS-related domain Alide2_1073 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide2_1073 SM01091 Transporter associated domain Alide2_1074 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide2_1081 SM00530 Helix-turn-helix XRE-family like proteins Alide2_1083 SM00382 ATPases associated with a variety of cellular activities Alide2_1085 SM00901 Alide2_1085 Alide2_1091 SM00387 Histidine kinase-like ATPases Alide2_1091 SM01080 Alide2_1091 Alide2_1092 SM00257 Lysin motif Alide2_1093 SM00448 cheY-homologous receiver domain Alide2_1093 SM00862 Transcriptional regulatory protein, C terminal Alide2_1096 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_1098 SM00481 DNA polymerase alpha chain like domain Alide2_1099 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_1099 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_1103 SM00382 ATPases associated with a variety of cellular activities Alide2_1111 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_1111 SM00895 Alide2_1111 Alide2_1126 SM00100 Cyclic nucleotide-monophosphate binding domain Alide2_1126 SM00419 helix_turn_helix, cAMP Regulatory protein Alide2_1127 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide2_1129 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide2_1130 SM00052 Putative diguanylate phosphodiesterase Alide2_1130 SM00091 PAS domain Alide2_1130 SM00267 diguanylate cyclase Alide2_1138 SM00382 ATPases associated with a variety of cellular activities Alide2_1148 SM00822 Alide2_1148 Alide2_1154 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1161 SM00881 CoA binding domain Alide2_1168 SM00893 Electron transfer flavoprotein domain Alide2_1169 SM00893 Electron transfer flavoprotein domain Alide2_1180 SM00852 Probable molybdopterin binding domain Alide2_1182 SM01130 Alide2_1182 Alide2_1187 SM00382 ATPases associated with a variety of cellular activities Alide2_1187 SM01086 C-terminal, D2-small domain, of ClpB protein Alide2_1193 SM00155 Phospholipase D. Active site motifs. Alide2_1205 SM00506 Appr-1"-p processing enzyme Alide2_1206 SM00478 endonuclease III Alide2_1206 SM00525 Alide2_1206 Alide2_1210 SM00871 Bacterial transcription activator, effector binding domain Alide2_1219 SM00763 PrkA AAA domain Alide2_1226 SM01359 Alide2_1226 Alide2_1226 SM01360 Alide2_1226 Alide2_1230 SM00870 Alide2_1230 Alide2_1232 SM00881 CoA binding domain Alide2_1238 SM00267 diguanylate cyclase Alide2_1238 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_1247 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_1247 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_1249 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Alide2_1251 SM00316 Ribosomal protein S1-like RNA-binding domain Alide2_1252 SM00363 S4 RNA-binding domain Alide2_1262 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Alide2_1263 SM00822 Alide2_1263 Alide2_1264 SM00823 Phosphopantetheine attachment site Alide2_1265 SM00825 Beta-ketoacyl synthase Alide2_1270 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide2_1271 SM00838 Elongation factor G C-terminus Alide2_1274 SM00358 Double-stranded RNA binding motif Alide2_1274 SM00535 Ribonuclease III family Alide2_1281 SM00382 ATPases associated with a variety of cellular activities Alide2_1282 SM00382 ATPases associated with a variety of cellular activities Alide2_1296 SM00464 Found in ATP-dependent protease La (LON) Alide2_1304 SM00859 Semialdehyde dehydrogenase, NAD binding domain Alide2_1305 SM01329 Alide2_1305 Alide2_1310 SM00849 Metallo-beta-lactamase superfamily Alide2_1310 SM01027 Beta-Casp domain Alide2_1320 SM00271 DnaJ molecular chaperone homology domain Alide2_1327 SM00382 ATPases associated with a variety of cellular activities Alide2_1329 SM00670 Large family of predicted nucleotide-binding domains Alide2_1333 SM00867 YceI-like domain Alide2_1334 SM00867 YceI-like domain Alide2_1335 SM00919 Malic enzyme, NAD binding domain Alide2_1335 SM01274 Alide2_1335 Alide2_1337 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_1342 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_1342 SM00895 Alide2_1342 Alide2_1344 SM01329 Alide2_1344 Alide2_1349 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_1363 SM00487 DEAD-like helicases superfamily Alide2_1363 SM00490 helicase superfamily c-terminal domain Alide2_1367 SM00382 ATPases associated with a variety of cellular activities Alide2_1368 SM00710 Parallel beta-helix repeats Alide2_1368 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses Alide2_1369 SM00900 Alide2_1369 Alide2_1375 SM00528 Domain in histone-like proteins of HNS family Alide2_1380 SM00448 cheY-homologous receiver domain Alide2_1380 SM00850 LytTr DNA-binding domain Alide2_1390 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Alide2_1390 SM00534 ATPase domain of DNA mismatch repair MUTS family Alide2_1400 SM00267 diguanylate cyclase Alide2_1403 SM00257 Lysin motif Alide2_1404 SM00363 S4 RNA-binding domain Alide2_1406 SM00363 S4 RNA-binding domain Alide2_1407 SM00562 Alide2_1407 Alide2_1409 SM00028 Tetratricopeptide repeats Alide2_1414 SM00564 beta-propeller repeat Alide2_1418 SM00244 prohibitin homologues Alide2_1419 SM00244 prohibitin homologues Alide2_1422 SM00788 Adenylosuccinate synthetase Alide2_1429 SM00852 Probable molybdopterin binding domain Alide2_1430 SM01230 Alide2_1430 Alide2_1432 SM00387 Histidine kinase-like ATPases Alide2_1432 SM00388 His Kinase A (phosphoacceptor) domain Alide2_1433 SM00382 ATPases associated with a variety of cellular activities Alide2_1433 SM00448 cheY-homologous receiver domain Alide2_1439 SM00387 Histidine kinase-like ATPases Alide2_1439 SM00388 His Kinase A (phosphoacceptor) domain Alide2_1440 SM00448 cheY-homologous receiver domain Alide2_1440 SM00862 Transcriptional regulatory protein, C terminal Alide2_1453 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_1453 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_1460 SM00382 ATPases associated with a variety of cellular activities Alide2_1460 SM00994 ClpX C4-type zinc finger Alide2_1460 SM01086 C-terminal, D2-small domain, of ClpB protein Alide2_1461 SM00382 ATPases associated with a variety of cellular activities Alide2_1461 SM00464 Found in ATP-dependent protease La (LON) Alide2_1475 SM00382 ATPases associated with a variety of cellular activities Alide2_1476 SM00382 ATPases associated with a variety of cellular activities Alide2_1495 SM00822 Alide2_1495 Alide2_1505 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1506 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1510 SM00822 Alide2_1510 Alide2_1513 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1518 SM00893 Electron transfer flavoprotein domain Alide2_1519 SM00893 Electron transfer flavoprotein domain Alide2_1524 SM00382 ATPases associated with a variety of cellular activities Alide2_1525 SM00382 ATPases associated with a variety of cellular activities Alide2_1529 SM00829 Enoylreductase Alide2_1542 SM00382 ATPases associated with a variety of cellular activities Alide2_1543 SM00382 ATPases associated with a variety of cellular activities Alide2_1548 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1549 SM00528 Domain in histone-like proteins of HNS family Alide2_1569 SM00382 ATPases associated with a variety of cellular activities Alide2_1581 SM00382 ATPases associated with a variety of cellular activities Alide2_1595 SM00530 Helix-turn-helix XRE-family like proteins Alide2_1597 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Alide2_1599 SM00226 Low molecular weight phosphatase family Alide2_1605 SM00470 ParB-like nuclease domain Alide2_1621 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Alide2_1621 SM00465 GIY-YIG type nucleases (URI domain) Alide2_1623 SM00411 bacterial (prokaryotic) histone like domain Alide2_1629 SM00878 Biotin carboxylase C-terminal domain Alide2_1655 SM01060 Alide2_1655 Alide2_1667 SM00342 helix_turn_helix, arabinose operon control protein Alide2_1676 SM00841 Elongation factor P, C-terminal Alide2_1676 SM01185 Alide2_1676 Alide2_1688 SM00382 ATPases associated with a variety of cellular activities Alide2_1689 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_1689 SM00866 Alide2_1689 Alide2_1691 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_1691 SM00866 Alide2_1691 Alide2_1694 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1695 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_1695 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Alide2_1697 SM00382 ATPases associated with a variety of cellular activities Alide2_1706 SM00858 Alide2_1706 Alide2_1710 SM01329 Alide2_1710 Alide2_1715 SM00411 bacterial (prokaryotic) histone like domain Alide2_1716 SM00530 Helix-turn-helix XRE-family like proteins Alide2_1719 SM00822 Alide2_1719 Alide2_1725 SM00382 ATPases associated with a variety of cellular activities Alide2_1730 SM00849 Metallo-beta-lactamase superfamily Alide2_1730 SM01027 Beta-Casp domain Alide2_1747 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Alide2_1747 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Alide2_1747 SM00493 Alide2_1747 Alide2_1759 SM00487 DEAD-like helicases superfamily Alide2_1769 SM00448 cheY-homologous receiver domain Alide2_1769 SM00862 Transcriptional regulatory protein, C terminal Alide2_1770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_1770 SM00387 Histidine kinase-like ATPases Alide2_1770 SM00388 His Kinase A (phosphoacceptor) domain Alide2_1773 SM00382 ATPases associated with a variety of cellular activities Alide2_1790 SM00382 ATPases associated with a variety of cellular activities Alide2_1791 SM00487 DEAD-like helicases superfamily Alide2_1791 SM00490 helicase superfamily c-terminal domain Alide2_1816 SM00530 Helix-turn-helix XRE-family like proteins Alide2_1819 SM00014 Acid phosphatase homologues Alide2_1821 SM00422 helix_turn_helix, mercury resistance Alide2_1839 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1840 SM00822 Alide2_1840 Alide2_1841 SM00881 CoA binding domain Alide2_1852 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1853 SM00893 Electron transfer flavoprotein domain Alide2_1854 SM00893 Electron transfer flavoprotein domain Alide2_1870 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1871 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_1872 SM00878 Biotin carboxylase C-terminal domain Alide2_1879 SM00382 ATPases associated with a variety of cellular activities Alide2_1884 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Alide2_1884 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Alide2_1884 SM00493 Alide2_1884 Alide2_1887 SM00226 Low molecular weight phosphatase family Alide2_1889 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Alide2_1905 SM00487 DEAD-like helicases superfamily Alide2_1927 SM00382 ATPases associated with a variety of cellular activities Alide2_1931 SM00382 ATPases associated with a variety of cellular activities Alide2_1936 SM00382 ATPases associated with a variety of cellular activities Alide2_1937 SM00382 ATPases associated with a variety of cellular activities Alide2_1942 SM00450 Rhodanese Homology Domain Alide2_1945 SM00857 Resolvase, N terminal domain Alide2_1948 SM00422 helix_turn_helix, mercury resistance Alide2_1953 SM00422 helix_turn_helix, mercury resistance Alide2_1963 SM00966 SpoVT / AbrB like domain Alide2_1965 SM00530 Helix-turn-helix XRE-family like proteins Alide2_1971 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide2_1973 SM00267 diguanylate cyclase Alide2_1975 SM00411 bacterial (prokaryotic) histone like domain Alide2_1976 SM00316 Ribosomal protein S1-like RNA-binding domain Alide2_1979 SM00830 Chorismate mutase type II Alide2_1981 SM00434 DNA Topoisomerase IV Alide2_1989 SM00382 ATPases associated with a variety of cellular activities Alide2_1993 SM00857 Resolvase, N terminal domain Alide2_1996 SM00530 Helix-turn-helix XRE-family like proteins Alide2_2008 SM00885 D5 N terminal like Alide2_2012 SM00470 ParB-like nuclease domain Alide2_2013 SM00470 ParB-like nuclease domain Alide2_2049 SM00487 DEAD-like helicases superfamily Alide2_2055 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide2_2059 SM00382 ATPases associated with a variety of cellular activities Alide2_2060 SM00155 Phospholipase D. Active site motifs. Alide2_2061 SM00382 ATPases associated with a variety of cellular activities Alide2_2061 SM01086 C-terminal, D2-small domain, of ClpB protein Alide2_2070 SM00857 Resolvase, N terminal domain Alide2_2073 SM00530 Helix-turn-helix XRE-family like proteins Alide2_2088 SM00829 Enoylreductase Alide2_2105 SM00530 Helix-turn-helix XRE-family like proteins Alide2_2109 SM00363 S4 RNA-binding domain Alide2_2110 SM00387 Histidine kinase-like ATPases Alide2_2110 SM00388 His Kinase A (phosphoacceptor) domain Alide2_2111 SM00448 cheY-homologous receiver domain Alide2_2111 SM00862 Transcriptional regulatory protein, C terminal Alide2_2119 SM00450 Rhodanese Homology Domain Alide2_2122 SM00831 Cation transporter/ATPase, N-terminus Alide2_2125 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide2_2132 SM00316 Ribosomal protein S1-like RNA-binding domain Alide2_2132 SM00357 Cold shock protein domain Alide2_2132 SM00955 Alide2_2132 Alide2_2138 SM00316 Ribosomal protein S1-like RNA-binding domain Alide2_2138 SM00322 K homology RNA-binding domain Alide2_2152 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide2_2152 SM01240 Alide2_2152 Alide2_2155 SM00382 ATPases associated with a variety of cellular activities Alide2_2161 SM00470 ParB-like nuclease domain Alide2_2166 SM00422 helix_turn_helix, mercury resistance Alide2_2170 SM00530 Helix-turn-helix XRE-family like proteins Alide2_2185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_2185 SM00387 Histidine kinase-like ATPases Alide2_2185 SM00388 His Kinase A (phosphoacceptor) domain Alide2_2186 SM00448 cheY-homologous receiver domain Alide2_2186 SM00862 Transcriptional regulatory protein, C terminal Alide2_2205 SM00382 ATPases associated with a variety of cellular activities Alide2_2215 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_2215 SM00866 Alide2_2215 Alide2_2226 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide2_2227 SM01092 CO dehydrogenase flavoprotein C-terminal domain Alide2_2228 SM00382 ATPases associated with a variety of cellular activities Alide2_2243 SM00448 cheY-homologous receiver domain Alide2_2244 SM00387 Histidine kinase-like ATPases Alide2_2244 SM00388 His Kinase A (phosphoacceptor) domain Alide2_2261 SM00822 Alide2_2261 Alide2_2277 SM00318 Staphylococcal nuclease homologues Alide2_2292 SM00344 helix_turn_helix ASNC type Alide2_2297 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_2297 SM00895 Alide2_2297 Alide2_2302 SM01007 Class II Aldolase and Adducin N-terminal domain Alide2_2309 SM00028 Tetratricopeptide repeats Alide2_2310 SM00840 Alide2_2310 Alide2_2311 SM00478 endonuclease III Alide2_2319 SM00382 ATPases associated with a variety of cellular activities Alide2_2321 SM00479 Alide2_2321 Alide2_2323 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Alide2_2335 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_2339 SM01209 Alide2_2339 Alide2_2339 SM01210 Alide2_2339 Alide2_2344 SM00100 Cyclic nucleotide-monophosphate binding domain Alide2_2344 SM00419 helix_turn_helix, cAMP Regulatory protein Alide2_2353 SM00316 Ribosomal protein S1-like RNA-binding domain Alide2_2354 SM00267 diguanylate cyclase Alide2_2377 SM00091 PAS domain Alide2_2377 SM00387 Histidine kinase-like ATPases Alide2_2377 SM00388 His Kinase A (phosphoacceptor) domain Alide2_2377 SM00448 cheY-homologous receiver domain Alide2_2379 SM00421 helix_turn_helix, Lux Regulon Alide2_2379 SM00448 cheY-homologous receiver domain Alide2_2380 SM00387 Histidine kinase-like ATPases Alide2_2393 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide2_2395 SM00487 DEAD-like helicases superfamily Alide2_2395 SM00490 helicase superfamily c-terminal domain Alide2_2400 SM00271 DnaJ molecular chaperone homology domain Alide2_2403 SM00479 Alide2_2403 Alide2_2413 SM00421 helix_turn_helix, Lux Regulon Alide2_2413 SM00448 cheY-homologous receiver domain Alide2_2414 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_2414 SM00091 PAS domain Alide2_2414 SM00387 Histidine kinase-like ATPases Alide2_2414 SM00388 His Kinase A (phosphoacceptor) domain Alide2_2441 SM00052 Putative diguanylate phosphodiesterase Alide2_2441 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_2441 SM00091 PAS domain Alide2_2441 SM00267 diguanylate cyclase Alide2_2441 SM01079 Alide2_2441 Alide2_2444 SM00968 SMC proteins Flexible Hinge Domain Alide2_2445 SM00771 ZipA, C-terminal domain (FtsZ-binding) Alide2_2446 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Alide2_2446 SM00292 breast cancer carboxy-terminal domain Alide2_2446 SM00532 Ligase N family Alide2_2457 SM00822 Alide2_2457 Alide2_2458 SM00382 ATPases associated with a variety of cellular activities Alide2_2470 SM00954 Region found in RelA / SpoT proteins Alide2_2476 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_2476 SM00895 Alide2_2476 Alide2_2480 SM00530 Helix-turn-helix XRE-family like proteins Alide2_2484 SM00878 Biotin carboxylase C-terminal domain Alide2_2486 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide2_2486 SM00876 Biotin and Thiamin Synthesis associated domain Alide2_2488 SM00448 cheY-homologous receiver domain Alide2_2488 SM00862 Transcriptional regulatory protein, C terminal Alide2_2489 SM00387 Histidine kinase-like ATPases Alide2_2489 SM00388 His Kinase A (phosphoacceptor) domain Alide2_2492 SM00450 Rhodanese Homology Domain Alide2_2499 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Alide2_2505 SM00354 helix_turn _helix lactose operon repressor Alide2_2506 SM00822 Alide2_2506 Alide2_2509 SM01144 Alide2_2509 Alide2_2513 SM00448 cheY-homologous receiver domain Alide2_2513 SM00862 Transcriptional regulatory protein, C terminal Alide2_2514 SM00387 Histidine kinase-like ATPases Alide2_2514 SM00388 His Kinase A (phosphoacceptor) domain Alide2_2517 SM00829 Enoylreductase Alide2_2526 SM00382 ATPases associated with a variety of cellular activities Alide2_2527 SM00382 ATPases associated with a variety of cellular activities Alide2_2534 SM00861 Transketolase, pyrimidine binding domain Alide2_2536 SM00344 helix_turn_helix ASNC type Alide2_2540 SM00849 Metallo-beta-lactamase superfamily Alide2_2545 SM00829 Enoylreductase Alide2_2554 SM00893 Electron transfer flavoprotein domain Alide2_2555 SM00893 Electron transfer flavoprotein domain Alide2_2558 SM00382 ATPases associated with a variety of cellular activities Alide2_2560 SM00460 Transglutaminase/protease-like homologues Alide2_2562 SM00861 Transketolase, pyrimidine binding domain Alide2_2567 SM00822 Alide2_2567 Alide2_2569 SM00861 Transketolase, pyrimidine binding domain Alide2_2576 SM00382 ATPases associated with a variety of cellular activities Alide2_2580 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide2_2587 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Alide2_2600 SM00382 ATPases associated with a variety of cellular activities Alide2_2605 SM00882 Coenzyme A transferase Alide2_2606 SM00882 Coenzyme A transferase Alide2_2607 SM00091 PAS domain Alide2_2607 SM00421 helix_turn_helix, Lux Regulon Alide2_2616 SM00382 ATPases associated with a variety of cellular activities Alide2_2617 SM00382 ATPases associated with a variety of cellular activities Alide2_2619 SM01130 Alide2_2619 Alide2_2621 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_2621 SM00895 Alide2_2621 Alide2_2622 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Alide2_2622 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide2_2624 SM00382 ATPases associated with a variety of cellular activities Alide2_2634 SM00382 ATPases associated with a variety of cellular activities Alide2_2634 SM00930 Alide2_2634 Alide2_2636 SM00493 Alide2_2636 Alide2_2638 SM00382 ATPases associated with a variety of cellular activities Alide2_2645 SM00382 ATPases associated with a variety of cellular activities Alide2_2657 SM00357 Cold shock protein domain Alide2_2657 SM00382 ATPases associated with a variety of cellular activities Alide2_2657 SM00959 Rho termination factor, N-terminal domain Alide2_2661 SM00091 PAS domain Alide2_2661 SM00387 Histidine kinase-like ATPases Alide2_2661 SM00388 His Kinase A (phosphoacceptor) domain Alide2_2662 SM00448 cheY-homologous receiver domain Alide2_2662 SM00862 Transcriptional regulatory protein, C terminal Alide2_2664 SM00382 ATPases associated with a variety of cellular activities Alide2_2669 SM00855 Phosphoglycerate mutase family Alide2_2672 SM00052 Putative diguanylate phosphodiesterase Alide2_2672 SM00267 diguanylate cyclase Alide2_2675 SM00382 ATPases associated with a variety of cellular activities Alide2_2677 SM01103 Alide2_2677 Alide2_2681 SM00851 MGS-like domain Alide2_2681 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Alide2_2682 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Alide2_2713 SM00422 helix_turn_helix, mercury resistance Alide2_2718 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Alide2_2724 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide2_2725 SM01400 Alide2_2725 Alide2_2726 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Alide2_2727 SM00849 Metallo-beta-lactamase superfamily Alide2_2727 SM01027 Beta-Casp domain Alide2_2735 SM00422 helix_turn_helix, mercury resistance Alide2_2747 SM00746 metallochaperone-like domain Alide2_2754 SM00448 cheY-homologous receiver domain Alide2_2754 SM00862 Transcriptional regulatory protein, C terminal Alide2_2767 SM00528 Domain in histone-like proteins of HNS family Alide2_2777 SM00470 ParB-like nuclease domain Alide2_2780 SM00487 DEAD-like helicases superfamily Alide2_2780 SM00491 Alide2_2780 Alide2_2788 SM00778 Zinc-binding domain of primase-helicase Alide2_2796 SM00530 Helix-turn-helix XRE-family like proteins Alide2_2822 SM00020 Trypsin-like serine protease Alide2_2823 SM00422 helix_turn_helix, mercury resistance Alide2_2824 SM00411 bacterial (prokaryotic) histone like domain Alide2_2825 SM00873 B3/4 domain Alide2_2825 SM00874 tRNA synthetase B5 domain Alide2_2825 SM00896 Ferredoxin-fold anticodon binding domain Alide2_2830 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Alide2_2834 SM00151 SWI complex, BAF60b domains Alide2_2842 SM00347 helix_turn_helix multiple antibiotic resistance protein Alide2_2857 SM00967 RNA 2'-O ribose methyltransferase substrate binding Alide2_2859 SM00382 ATPases associated with a variety of cellular activities Alide2_2863 SM00749 bacterial OsmY and nodulation domain Alide2_2865 SM00267 diguanylate cyclase Alide2_2881 SM00858 Alide2_2881 Alide2_2883 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Alide2_2884 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_2884 SM00895 Alide2_2884 Alide2_2886 SM01130 Alide2_2886 Alide2_2889 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Alide2_2898 SM00267 diguanylate cyclase Alide2_2899 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Alide2_2900 SM01130 Alide2_2900 Alide2_2905 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_2905 SM00895 Alide2_2905 Alide2_2915 SM00342 helix_turn_helix, arabinose operon control protein Alide2_2915 SM00478 endonuclease III Alide2_2915 SM01009 AlkA N-terminal domain Alide2_2918 SM00240 Forkhead associated domain Alide2_2928 SM01211 Alide2_2928 Alide2_2930 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide2_2937 SM01329 Alide2_2937 Alide2_2948 SM00870 Alide2_2948 Alide2_2951 SM00382 ATPases associated with a variety of cellular activities Alide2_2951 SM00487 DEAD-like helicases superfamily Alide2_2951 SM00490 helicase superfamily c-terminal domain Alide2_2951 SM00847 Helicase associated domain (HA2) Add an annotation Alide2_2956 SM00382 ATPases associated with a variety of cellular activities Alide2_2963 SM00382 ATPases associated with a variety of cellular activities Alide2_2966 SM00530 Helix-turn-helix XRE-family like proteins Alide2_2989 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Alide2_2992 SM00422 helix_turn_helix, mercury resistance Alide2_3005 SM00382 ATPases associated with a variety of cellular activities Alide2_3015 SM00354 helix_turn _helix lactose operon repressor Alide2_3016 SM00382 ATPases associated with a variety of cellular activities Alide2_3016 SM01086 C-terminal, D2-small domain, of ClpB protein Alide2_3018 SM00481 DNA polymerase alpha chain like domain Alide2_3020 SM00491 Alide2_3020 Alide2_3021 SM00331 Sigma factor PP2C-like phosphatases Alide2_3021 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Alide2_3026 SM00861 Transketolase, pyrimidine binding domain Alide2_3033 SM00382 ATPases associated with a variety of cellular activities Alide2_3045 SM00244 prohibitin homologues Alide2_3056 SM00477 DNA/RNA non-specific endonuclease Alide2_3056 SM00892 DNA/RNA non-specific endonuclease Alide2_3067 SM00530 Helix-turn-helix XRE-family like proteins Alide2_3069 SM00486 DNA polymerase type-B family Alide2_3074 SM00671 Sel1-like repeats. Alide2_3079 SM00822 Alide2_3079 Alide2_3082 SM00382 ATPases associated with a variety of cellular activities Alide2_3083 SM00382 ATPases associated with a variety of cellular activities Alide2_3105 SM00287 Bacterial SH3 domain homologues Alide2_3114 SM00100 Cyclic nucleotide-monophosphate binding domain Alide2_3114 SM00419 helix_turn_helix, cAMP Regulatory protein Alide2_3119 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_3121 SM00917 LeuA allosteric (dimerisation) domain Alide2_3122 SM00917 LeuA allosteric (dimerisation) domain Alide2_3138 SM00938 Nitrogen regulatory protein P-II Alide2_3142 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_3142 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_3143 SM00260 Two component signalling adaptor domain Alide2_3149 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide2_3152 SM00852 Probable molybdopterin binding domain Alide2_3157 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_3164 SM00849 Metallo-beta-lactamase superfamily Alide2_3183 SM00382 ATPases associated with a variety of cellular activities Alide2_3184 SM00878 Biotin carboxylase C-terminal domain Alide2_3185 SM00796 Allophanate hydrolase subunit 1 Alide2_3185 SM00797 Allophanate hydrolase subunit 2 Alide2_3189 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_3189 SM00895 Alide2_3189 Alide2_3192 SM00248 ankyrin repeats Alide2_3201 SM00387 Histidine kinase-like ATPases Alide2_3201 SM00388 His Kinase A (phosphoacceptor) domain Alide2_3202 SM00421 helix_turn_helix, Lux Regulon Alide2_3202 SM00448 cheY-homologous receiver domain Alide2_3208 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_3214 SM00354 helix_turn _helix lactose operon repressor Alide2_3222 SM00316 Ribosomal protein S1-like RNA-binding domain Alide2_3222 SM00732 Likely ribonuclease with RNase H fold. Alide2_3234 SM00650 Ribosomal RNA adenine dimethylases Alide2_3235 SM00450 Rhodanese Homology Domain Alide2_3244 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_3247 SM00382 ATPases associated with a variety of cellular activities Alide2_3248 SM00382 ATPases associated with a variety of cellular activities Alide2_3259 SM00028 Tetratricopeptide repeats Alide2_3286 SM00528 Domain in histone-like proteins of HNS family Alide2_3294 SM00470 ParB-like nuclease domain Alide2_3296 SM00411 bacterial (prokaryotic) histone like domain Alide2_3309 SM00487 DEAD-like helicases superfamily Alide2_3328 SM00778 Zinc-binding domain of primase-helicase Alide2_3336 SM00530 Helix-turn-helix XRE-family like proteins Alide2_3371 SM00849 Metallo-beta-lactamase superfamily Alide2_3371 SM01027 Beta-Casp domain Alide2_3372 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Alide2_3373 SM01400 Alide2_3373 Alide2_3374 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide2_3381 SM00422 helix_turn_helix, mercury resistance Alide2_3394 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Alide2_3394 SM00450 Rhodanese Homology Domain Alide2_3401 SM00938 Nitrogen regulatory protein P-II Alide2_3404 SM00448 cheY-homologous receiver domain Alide2_3404 SM00862 Transcriptional regulatory protein, C terminal Alide2_3405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_3405 SM00387 Histidine kinase-like ATPases Alide2_3405 SM00388 His Kinase A (phosphoacceptor) domain Alide2_3421 SM00382 ATPases associated with a variety of cellular activities Alide2_3432 SM01207 Alide2_3432 Alide2_3435 SM00382 ATPases associated with a variety of cellular activities Alide2_3445 SM00530 Helix-turn-helix XRE-family like proteins Alide2_3449 SM00942 Primase C terminal 1 (PriCT-1) Alide2_3461 SM00935 Outer membrane protein (OmpH-like) Alide2_3463 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide2_3478 SM00422 helix_turn_helix, mercury resistance Alide2_3486 SM00382 ATPases associated with a variety of cellular activities Alide2_3487 SM00487 DEAD-like helicases superfamily Alide2_3487 SM00490 helicase superfamily c-terminal domain Alide2_3488 SM00631 Alide2_3488 Alide2_3532 SM00382 ATPases associated with a variety of cellular activities Alide2_3546 SM00899 Alide2_3546 Alide2_3552 SM00382 ATPases associated with a variety of cellular activities Alide2_3553 SM00382 ATPases associated with a variety of cellular activities Alide2_3558 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_3559 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_3561 SM00382 ATPases associated with a variety of cellular activities Alide2_3567 SM00382 ATPases associated with a variety of cellular activities Alide2_3571 SM00419 helix_turn_helix, cAMP Regulatory protein Alide2_3577 SM00382 ATPases associated with a variety of cellular activities Alide2_3586 SM00382 ATPases associated with a variety of cellular activities Alide2_3587 SM00382 ATPases associated with a variety of cellular activities Alide2_3591 SM00382 ATPases associated with a variety of cellular activities Alide2_3594 SM00382 ATPases associated with a variety of cellular activities Alide2_3597 SM00155 Phospholipase D. Active site motifs. Alide2_3599 SM00400 zinc finger Alide2_3599 SM00493 Alide2_3599 Alide2_3610 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide2_3612 SM00360 RNA recognition motif Alide2_3614 SM00954 Region found in RelA / SpoT proteins Alide2_3618 SM00448 cheY-homologous receiver domain Alide2_3618 SM00862 Transcriptional regulatory protein, C terminal Alide2_3619 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_3619 SM00387 Histidine kinase-like ATPases Alide2_3619 SM00388 His Kinase A (phosphoacceptor) domain Alide2_3622 SM00487 DEAD-like helicases superfamily Alide2_3622 SM00490 helicase superfamily c-terminal domain Alide2_3622 SM00982 Alide2_3622 Alide2_3622 SM01058 CarD-like/TRCF domain Alide2_3626 SM00448 cheY-homologous receiver domain Alide2_3626 SM00850 LytTr DNA-binding domain Alide2_3637 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Alide2_3637 SM00474 3'-5' exonuclease Alide2_3637 SM00475 5'-3' exonuclease Alide2_3637 SM00482 DNA polymerase A domain Alide2_3642 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_3642 SM00267 diguanylate cyclase Alide2_3645 SM01240 Alide2_3645 Alide2_3652 SM00382 ATPases associated with a variety of cellular activities Alide2_3656 SM00100 Cyclic nucleotide-monophosphate binding domain Alide2_3656 SM00419 helix_turn_helix, cAMP Regulatory protein Alide2_3663 SM00882 Coenzyme A transferase Alide2_3664 SM00882 Coenzyme A transferase Alide2_3666 SM00849 Metallo-beta-lactamase superfamily Alide2_3669 SM00267 diguanylate cyclase Alide2_3670 SM00487 DEAD-like helicases superfamily Alide2_3670 SM00490 helicase superfamily c-terminal domain Alide2_3672 SM00479 Alide2_3672 Alide2_3690 SM00382 ATPases associated with a variety of cellular activities Alide2_3691 SM00382 ATPases associated with a variety of cellular activities Alide2_3694 SM00382 ATPases associated with a variety of cellular activities Alide2_3697 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide2_3698 SM00507 HNH nucleases Alide2_3707 SM00986 Uracil DNA glycosylase superfamily Alide2_3707 SM00987 UreE urease accessory protein, C-terminal domain Alide2_3710 SM00843 Alide2_3710 Alide2_3719 SM00507 HNH nucleases Alide2_3720 SM00904 Riboflavin kinase Alide2_3723 SM00354 helix_turn _helix lactose operon repressor Alide2_3727 SM00382 ATPases associated with a variety of cellular activities Alide2_3733 SM00829 Enoylreductase Alide2_3735 SM00052 Putative diguanylate phosphodiesterase Alide2_3735 SM00267 diguanylate cyclase Alide2_3740 SM00382 ATPases associated with a variety of cellular activities Alide2_3742 SM00986 Uracil DNA glycosylase superfamily Alide2_3742 SM00987 UreE urease accessory protein, C-terminal domain Alide2_3745 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Alide2_3750 SM00327 von Willebrand factor (vWF) type A domain Alide2_3752 SM00382 ATPases associated with a variety of cellular activities Alide2_3755 SM00100 Cyclic nucleotide-monophosphate binding domain Alide2_3755 SM00419 helix_turn_helix, cAMP Regulatory protein Alide2_3761 SM00852 Probable molybdopterin binding domain Alide2_3762 SM00829 Enoylreductase Alide2_3769 SM00487 DEAD-like helicases superfamily Alide2_3769 SM00490 helicase superfamily c-terminal domain Alide2_3771 SM00861 Transketolase, pyrimidine binding domain Alide2_3776 SM00450 Rhodanese Homology Domain Alide2_3778 SM00849 Metallo-beta-lactamase superfamily Alide2_3780 SM00434 DNA Topoisomerase IV Alide2_3781 SM00387 Histidine kinase-like ATPases Alide2_3781 SM00433 TopoisomeraseII Alide2_3785 SM01130 Alide2_3785 Alide2_3788 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Alide2_3796 SM01192 Alide2_3796 Alide2_3796 SM01193 Alide2_3796 Alide2_3798 SM00382 ATPases associated with a variety of cellular activities Alide2_3801 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_3801 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Alide2_3805 SM00052 Putative diguanylate phosphodiesterase Alide2_3806 SM00052 Putative diguanylate phosphodiesterase Alide2_3817 SM00955 Alide2_3817 Alide2_3831 SM00878 Biotin carboxylase C-terminal domain Alide2_3838 SM00644 Alide2_3838 Alide2_3839 SM00382 ATPases associated with a variety of cellular activities Alide2_3839 SM00448 cheY-homologous receiver domain Alide2_3840 SM00387 Histidine kinase-like ATPases Alide2_3840 SM00388 His Kinase A (phosphoacceptor) domain Alide2_3843 SM00382 ATPases associated with a variety of cellular activities Alide2_3843 SM00962 SRP54-type protein, GTPase domain Alide2_3843 SM00963 SRP54-type protein, helical bundle domain Alide2_3844 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide2_3867 SM00829 Enoylreductase Alide2_3870 SM00421 helix_turn_helix, Lux Regulon Alide2_3880 SM00798 AICARFT/IMPCHase bienzyme Alide2_3880 SM00851 MGS-like domain Alide2_3884 SM00448 cheY-homologous receiver domain Alide2_3885 SM00448 cheY-homologous receiver domain Alide2_3886 SM00260 Two component signalling adaptor domain Alide2_3887 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_3888 SM00073 Histidine Phosphotransfer domain Alide2_3888 SM00260 Two component signalling adaptor domain Alide2_3888 SM00387 Histidine kinase-like ATPases Alide2_3888 SM00448 cheY-homologous receiver domain Alide2_3888 SM01231 Alide2_3888 Alide2_3890 SM00732 Likely ribonuclease with RNase H fold. Alide2_3894 SM00563 Phosphate acyltransferases Alide2_3895 SM00382 ATPases associated with a variety of cellular activities Alide2_3898 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Alide2_3899 SM00448 cheY-homologous receiver domain Alide2_3899 SM00862 Transcriptional regulatory protein, C terminal Alide2_3900 SM00387 Histidine kinase-like ATPases Alide2_3900 SM00388 His Kinase A (phosphoacceptor) domain Alide2_3901 SM00155 Phospholipase D. Active site motifs. Alide2_3919 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_3919 SM00866 Alide2_3919 Alide2_3922 SM00382 ATPases associated with a variety of cellular activities Alide2_3926 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_3927 SM00882 Coenzyme A transferase Alide2_3928 SM00882 Coenzyme A transferase Alide2_3944 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_3944 SM00866 Alide2_3944 Alide2_3975 SM00729 Elongator protein 3, MiaB family, Radical SAM Alide2_3978 SM00331 Sigma factor PP2C-like phosphatases Alide2_3978 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Alide2_3979 SM00220 Serine/Threonine protein kinases, catalytic domain Alide2_3994 SM00382 ATPases associated with a variety of cellular activities Alide2_4000 SM00072 Guanylate kinase homologues. Alide2_4001 SM01409 Alide2_4001 Alide2_4002 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide2_4002 SM00954 Region found in RelA / SpoT proteins Alide2_4005 SM01387 Alide2_4005 Alide2_4006 SM00316 Ribosomal protein S1-like RNA-binding domain Alide2_4006 SM00322 K homology RNA-binding domain Alide2_4007 SM00829 Enoylreductase Alide2_4015 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Alide2_4016 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Alide2_4027 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Alide2_4028 SM00853 MutL C terminal dimerisation domain Alide2_4028 SM01340 Alide2_4028 Alide2_4034 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide2_4035 SM01092 CO dehydrogenase flavoprotein C-terminal domain Alide2_4037 SM00646 Alide2_4037 Alide2_4047 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_4050 SM00822 Alide2_4050 Alide2_4054 SM00864 Tubulin/FtsZ family, GTPase domain Alide2_4054 SM00865 Tubulin/FtsZ family, C-terminal domain Alide2_4055 SM00842 Cell division protein FtsA Alide2_4069 SM00382 ATPases associated with a variety of cellular activities Alide2_4069 SM01086 C-terminal, D2-small domain, of ClpB protein Alide2_4073 SM00833 Cobalamin synthesis protein cobW C-terminal domain Alide2_4075 SM00448 cheY-homologous receiver domain Alide2_4076 SM00448 cheY-homologous receiver domain Alide2_4077 SM00448 cheY-homologous receiver domain Alide2_4078 SM00091 PAS domain Alide2_4078 SM00387 Histidine kinase-like ATPases Alide2_4078 SM00388 His Kinase A (phosphoacceptor) domain Alide2_4079 SM00448 cheY-homologous receiver domain Alide2_4080 SM00448 cheY-homologous receiver domain Alide2_4081 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide2_4082 SM00091 PAS domain Alide2_4082 SM00387 Histidine kinase-like ATPases Alide2_4082 SM00388 His Kinase A (phosphoacceptor) domain Alide2_4083 SM00387 Histidine kinase-like ATPases Alide2_4083 SM00388 His Kinase A (phosphoacceptor) domain Alide2_4084 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_4084 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_4088 SM00849 Metallo-beta-lactamase superfamily Alide2_4089 SM00363 S4 RNA-binding domain Alide2_4101 SM00347 helix_turn_helix multiple antibiotic resistance protein Alide2_4102 SM00822 Alide2_4102 Alide2_4106 SM00893 Electron transfer flavoprotein domain Alide2_4107 SM00893 Electron transfer flavoprotein domain Alide2_4129 SM00382 ATPases associated with a variety of cellular activities Alide2_4136 SM00479 Alide2_4136 Alide2_4137 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide2_4143 SM00878 Biotin carboxylase C-terminal domain Alide2_4148 SM00342 helix_turn_helix, arabinose operon control protein Alide2_4153 SM00382 ATPases associated with a variety of cellular activities Alide2_4154 SM00382 ATPases associated with a variety of cellular activities Alide2_4157 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_4160 SM00267 diguanylate cyclase Alide2_4163 SM00052 Putative diguanylate phosphodiesterase Alide2_4163 SM00267 diguanylate cyclase Alide2_4178 SM00947 Carbonic anhydrase Alide2_4180 SM00422 helix_turn_helix, mercury resistance Alide2_4181 SM00382 ATPases associated with a variety of cellular activities Alide2_4182 SM00448 cheY-homologous receiver domain Alide2_4184 SM00138 Methyltransferase, chemotaxis proteins Alide2_4185 SM00260 Two component signalling adaptor domain Alide2_4186 SM00073 Histidine Phosphotransfer domain Alide2_4186 SM00260 Two component signalling adaptor domain Alide2_4186 SM00387 Histidine kinase-like ATPases Alide2_4186 SM01231 Alide2_4186 Alide2_4187 SM00448 cheY-homologous receiver domain Alide2_4189 SM00387 Histidine kinase-like ATPases Alide2_4189 SM00448 cheY-homologous receiver domain Alide2_4190 SM00421 helix_turn_helix, Lux Regulon Alide2_4190 SM00448 cheY-homologous receiver domain Alide2_4200 SM00382 ATPases associated with a variety of cellular activities Alide2_4214 SM00448 cheY-homologous receiver domain Alide2_4218 SM00382 ATPases associated with a variety of cellular activities Alide2_4218 SM00962 SRP54-type protein, GTPase domain Alide2_4223 SM00858 Alide2_4223 Alide2_4232 SM00047 Lysozyme subfamily 2 Alide2_4237 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_4246 SM00855 Phosphoglycerate mutase family Alide2_4247 SM00267 diguanylate cyclase Alide2_4258 SM00487 DEAD-like helicases superfamily Alide2_4258 SM00490 helicase superfamily c-terminal domain Alide2_4262 SM00382 ATPases associated with a variety of cellular activities Alide2_4266 SM00382 ATPases associated with a variety of cellular activities Alide2_4278 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_4278 SM00895 Alide2_4278 Alide2_4283 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_4283 SM00091 PAS domain Alide2_4288 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_4288 SM00895 Alide2_4288 Alide2_4289 SM00563 Phosphate acyltransferases Alide2_4290 SM00382 ATPases associated with a variety of cellular activities Alide2_4298 SM00897 FIST N domain Alide2_4298 SM01204 Alide2_4298 Alide2_4300 SM00411 bacterial (prokaryotic) histone like domain Alide2_4304 SM00530 Helix-turn-helix XRE-family like proteins Alide2_4316 SM00382 ATPases associated with a variety of cellular activities Alide2_4320 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Alide2_4322 SM01092 CO dehydrogenase flavoprotein C-terminal domain Alide2_4324 SM00382 ATPases associated with a variety of cellular activities Alide2_4339 SM00382 ATPases associated with a variety of cellular activities Alide2_4352 SM00662 RNA polymerases D Alide2_4353 SM00363 S4 RNA-binding domain Alide2_4353 SM01390 Alide2_4353 Alide2_4366 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Alide2_4367 SM01374 Alide2_4367 Alide2_4369 SM00420 helix_turn_helix, Deoxyribose operon repressor Alide2_4369 SM01134 Alide2_4369 Alide2_4377 SM00487 DEAD-like helicases superfamily Alide2_4377 SM00490 helicase superfamily c-terminal domain Alide2_4378 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Alide2_4384 SM00986 Uracil DNA glycosylase superfamily Alide2_4384 SM00987 UreE urease accessory protein, C-terminal domain Alide2_4392 SM00953 Alide2_4392 Alide2_4394 SM00830 Chorismate mutase type II Alide2_4396 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_4396 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_4397 SM00052 Putative diguanylate phosphodiesterase Alide2_4397 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_4397 SM00091 PAS domain Alide2_4397 SM00267 diguanylate cyclase Alide2_4397 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_4412 SM00564 beta-propeller repeat Alide2_4418 SM00382 ATPases associated with a variety of cellular activities Alide2_4424 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_4424 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_4425 SM00052 Putative diguanylate phosphodiesterase Alide2_4425 SM00267 diguanylate cyclase Alide2_4425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_4426 SM00448 cheY-homologous receiver domain Alide2_4426 SM01012 Alide2_4426 Alide2_4431 SM00981 Alide2_4431 Alide2_4432 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_4432 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_4435 SM00382 ATPases associated with a variety of cellular activities Alide2_4439 SM00836 DALR anticodon binding domain Alide2_4439 SM01016 Arginyl tRNA synthetase N terminal dom Alide2_4443 SM00387 Histidine kinase-like ATPases Alide2_4443 SM00388 His Kinase A (phosphoacceptor) domain Alide2_4443 SM00448 cheY-homologous receiver domain Alide2_4444 SM00421 helix_turn_helix, Lux Regulon Alide2_4444 SM00448 cheY-homologous receiver domain Alide2_4460 SM00235 Zinc-dependent metalloprotease Alide2_4468 SM00382 ATPases associated with a variety of cellular activities Alide2_4470 SM00052 Putative diguanylate phosphodiesterase Alide2_4470 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Alide2_4470 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_4470 SM00091 PAS domain Alide2_4470 SM00267 diguanylate cyclase Alide2_4481 SM01001 AIR carboxylase Alide2_4497 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Alide2_4497 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Alide2_4501 SM01011 Aminopeptidase P, N-terminal domain Alide2_4510 SM00861 Transketolase, pyrimidine binding domain Alide2_4511 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Alide2_4527 SM00871 Bacterial transcription activator, effector binding domain Alide2_4530 SM01144 Alide2_4530 Alide2_4531 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_4535 SM00881 CoA binding domain Alide2_4539 SM00151 SWI complex, BAF60b domains Alide2_4539 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Alide2_4539 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Alide2_4539 SM00493 Alide2_4539 Alide2_4540 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Alide2_4543 SM00829 Enoylreductase Alide2_4548 SM00347 helix_turn_helix multiple antibiotic resistance protein Alide2_4550 SM00953 Alide2_4550 Alide2_4553 SM00387 Histidine kinase-like ATPases Alide2_4553 SM00388 His Kinase A (phosphoacceptor) domain Alide2_4554 SM00448 cheY-homologous receiver domain Alide2_4554 SM00862 Transcriptional regulatory protein, C terminal Alide2_4557 SM00382 ATPases associated with a variety of cellular activities Alide2_4559 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_4559 SM00895 Alide2_4559 Alide2_4564 SM01005 Alanine racemase, C-terminal domain Alide2_4566 SM00344 helix_turn_helix ASNC type Alide2_4568 SM00382 ATPases associated with a variety of cellular activities Alide2_4573 SM01323 Alide2_4573 Alide2_4575 SM00344 helix_turn_helix ASNC type Alide2_4577 SM00925 MltA specific insert domain Alide2_4579 SM00421 helix_turn_helix, Lux Regulon Alide2_4579 SM00448 cheY-homologous receiver domain Alide2_4580 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Alide2_4580 SM00091 PAS domain Alide2_4580 SM00387 Histidine kinase-like ATPases Alide2_4580 SM00388 His Kinase A (phosphoacceptor) domain Alide2_4588 SM01322 Alide2_4588 Alide2_4601 SM00849 Metallo-beta-lactamase superfamily Alide2_4602 SM00240 Forkhead associated domain Alide2_4603 SM00331 Sigma factor PP2C-like phosphatases Alide2_4603 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Alide2_4605 SM00881 CoA binding domain Alide2_4607 SM00859 Semialdehyde dehydrogenase, NAD binding domain Alide2_4609 SM00257 Lysin motif Alide2_4619 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Alide2_4623 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Alide2_4623 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Alide2_4637 SM00382 ATPases associated with a variety of cellular activities Alide2_4640 SM00881 CoA binding domain Alide2_4641 SM00878 Biotin carboxylase C-terminal domain Alide2_4648 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_4655 SM00387 Histidine kinase-like ATPases Alide2_4656 SM00448 cheY-homologous receiver domain Alide2_4656 SM00862 Transcriptional regulatory protein, C terminal Alide2_4667 SM00831 Cation transporter/ATPase, N-terminus Alide2_4673 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_4675 SM00829 Enoylreductase Alide2_4679 SM00346 helix_turn_helix isocitrate lyase regulation Alide2_4695 SM00267 diguanylate cyclase Alide2_4696 SM00345 helix_turn_helix gluconate operon transcriptional repressor Alide2_4696 SM00895 Alide2_4696 Alide2_4700 SM00382 ATPases associated with a variety of cellular activities Alide2_4701 SM00382 ATPases associated with a variety of cellular activities Alide2_4704 SM00919 Malic enzyme, NAD binding domain Alide2_4704 SM01274 Alide2_4704 Alide2_4707 SM00650 Ribosomal RNA adenine dimethylases Alide2_4716 SM00267 diguanylate cyclase Alide2_4720 SM00360 RNA recognition motif Alide2_4721 SM00360 RNA recognition motif Alide2_4722 SM00822 Alide2_4722 Alide2_4725 SM00116 Domain in cystathionine beta-synthase and other proteins. Alide2_4729 SM00100 Cyclic nucleotide-monophosphate binding domain Alide2_4731 SM00062 Bacterial periplasmic substrate-binding proteins Alide2_4740 SM00382 ATPases associated with a variety of cellular activities Alide2_4747 SM01234 Alide2_4747 Alide2_4757 SM00387 Histidine kinase-like ATPases Alide2_4758 SM00421 helix_turn_helix, Lux Regulon Alide2_4758 SM00448 cheY-homologous receiver domain Alide2_4795 SM00411 bacterial (prokaryotic) histone like domain Alide2_4804 SM00493 Alide2_4804 Alide2_4807 SM00470 ParB-like nuclease domain Alide2_4816 SM00155 Phospholipase D. Active site motifs. Alide2_4835 SM00857 Resolvase, N terminal domain