locus strain_id interpro function go others Alide2_0001 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001957|IPR003593|IPR010921|IPR013159|IPR013317|IPR018312|IPR020591|IPR024633|IPR027417|IPR038454 AAA+ ATPase domain|Chromosomal replication control, initiator DnaA|Chromosomal replication control, initiator DnaA, conserved site|Chromosomal replication control, initiator DnaA-like|Chromosomal replication initiator protein DnaA|Chromosomal replication initiator, DnaA C-terminal|DnaA N-terminal domain|DnaA, N-terminal domain superfamily|P-loop containing nucleoside triphosphate hydrolase|Trp repressor/replication initiator GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275|GO:0043565 G3DSA:1.10.1750.10|G3DSA:1.10.8.60|G3DSA:3.30.300.180|G3DSA:3.40.50.300|MF_00377|PF00308|PF08299|PF11638|PR00051|PS01008|SM00382|SM00760|SSF48295|SSF52540|TIGR00362 Alide2_0002 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001001|IPR022634|IPR022635|IPR022637 DNA polymerase III, beta sliding clamp|DNA polymerase III, beta sliding clamp, C-terminal|DNA polymerase III, beta sliding clamp, N-terminal|DNA polymerase III, beta sliding clamp, central GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 G3DSA:3.10.150.10|PF00712|PF02767|PF02768|PIRSF000804|SM00480|SSF55979|TIGR00663 Alide2_0003 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000565|IPR001241|IPR002288|IPR003594|IPR006171|IPR011557|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568|IPR036890 DNA gyrase B subunit, C-terminal|DNA gyrase, subunit B|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B|DNA topoisomerase, type IIA, subunit B, C-terminal|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|TOPRIM domain GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_01898|PF00204|PF00986|PF01751|PF02518|PR00418|PR01159|PS00177|SM00387|SM00433|SSF54211|SSF55874|SSF56719|TIGR01059 Alide2_0005 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_0006 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_0007 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_0009 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005358 Putative zinc- or iron-chelating domain containing protein PF03692 Alide2_0010 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0011 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_0012 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0013 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0014 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010839 Acyclic terpene utilisation PF07287 Alide2_0015 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR016185 Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif|Single hybrid motif GO:0005524 G3DSA:2.40.50.100|G3DSA:3.30.470.130|PF00289|PF00364|PF02785|PF02786|PS00866|PS00867|SM00878|SM01209|SSF51230|SSF51246|SSF52440|SSF56059 Alide2_0016 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 Alide2_0017 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029045|IPR034733 Acetyl-CoA carboxylase|ClpP/crotonase-like domain superfamily G3DSA:3.90.226.10|PF01039|SSF52096 Alide2_0018 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001792|IPR017968|IPR020456|IPR036046 Acylphosphatase|Acylphosphatase, conserved site|Acylphosphatase-like domain|Acylphosphatase-like domain superfamily GO:0003998 G3DSA:3.30.70.100|PF00708|PR00112|PS00151|SSF54975 Alide2_0019 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site G3DSA:3.30.70.20|PF14697|PS00198|SSF54862 Alide2_0020 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001342|IPR005106|IPR016204|IPR019811|IPR036291 Aspartate/homoserine dehydrogenase, NAD-binding|Homoserine dehydrogenase|Homoserine dehydrogenase, catalytic|Homoserine dehydrogenase, conserved site|NAD(P)-binding domain superfamily GO:0004412|GO:0006520|GO:0016491|GO:0050661|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.30.70.260|G3DSA:3.40.50.720|PF00742|PF03447|PIRSF000098|PS01042|SSF51735|SSF55347 Alide2_0021 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006555|IPR010614|IPR014001|IPR027417|IPR039000 ATP-dependent DNA helicase DinG|ATP-dependent helicase, C-terminal|DEAD2|Helicase superfamily 1/2, ATP-binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006139|GO:0008026|GO:0016818 G3DSA:3.40.50.300|MF_02205|PF06733|PF13307|SM00487|SM00491|SSF52540 Alide2_0022 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012337|IPR013520|IPR036397 Exonuclease, RNase T/DNA polymerase III|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676 G3DSA:3.30.420.10|PF00929|SM00479|SSF53098 Alide2_0023 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000064|IPR038765 Endopeptidase, NLPC/P60 domain|Papain-like cysteine peptidase superfamily G3DSA:3.90.1720.10|PF00877|SSF54001 Alide2_0024 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006218|IPR006219|IPR013785 Aldolase-type TIM barrel|DAHP synthetase I/KDSA|DHAP synthase, class 1 GO:0003824|GO:0003849|GO:0009058|GO:0009073 G3DSA:3.20.20.70|PF00793|PIRSF001361|SSF51569|TIGR00034 Alide2_0025 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR001610|IPR001633|IPR003018|IPR013767|IPR029016|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GAF domain|GAF-like domain superfamily|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS domain superfamily|PAS fold GO:0005515|GO:0006355 G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.450.40|G3DSA:3.30.70.270|PF00563|PF00989|PF00990|PF13185|PF13188|SM00052|SM00065|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55781|SSF55785|TIGR00229|TIGR00254 Alide2_0026 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_0027 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0028 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|PF00441|PF02771|SSF47203|SSF56645 Alide2_0029 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_0030 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0031 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003781|IPR013815|IPR016102|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF56059 Alide2_0032 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_0033 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_0034 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018550 Lipid A 3-O-deacylase-related G3DSA:2.40.160.20|PF09411 Alide2_0035 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012899 LTXXQ motif family protein GO:0042597 G3DSA:1.20.120.1490|PF07813 Alide2_0036 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007476 Putative exonuclease, RdgC GO:0006310 PF04381 Alide2_0037 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011415|IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain|Predicted bifunctional spore maturation protein, fused SpmA/SpmB PF07670|PIRSF036542 Alide2_0038 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021724 Protein of unknown function DUF3297 PF11730 Alide2_0039 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013529|IPR017853|IPR029062 Class I glutamine amidotransferase-like|Glycoside hydrolase superfamily|Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 G3DSA:3.20.20.80|G3DSA:3.40.50.880|PF02449|SSF51445 Alide2_0040 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061|IPR011789|IPR015358 Cu(I)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain superfamily|Transcription regulator MerR, DNA binding GO:0003677|GO:0003700|GO:0005507|GO:0006355|GO:0045893 G3DSA:1.10.1660.10|PF00376|PF09278|PR00040|PS00552|SM00422|SSF46955|TIGR02044 Alide2_0041 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006121|IPR036163 Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA GO:0030001|GO:0046872 G3DSA:3.30.70.100|PF00403|SSF55008 Alide2_0042 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR006121|IPR008250|IPR017969|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036163|IPR036412 HAD superfamily|HAD-like superfamily|Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872 G3DSA:2.70.150.20|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PR00943|PS00154|PS01047|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525 Alide2_0043 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003660|IPR004089|IPR004090|IPR024478 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF00672|PF12729|PR00260|SM00283|SM00304|SSF58104 Alide2_0044 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR004763|IPR027463 Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006812|GO:0008324|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00914 Alide2_0045 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_0046 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954 Alide2_0047 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 Alide2_0048 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR013727|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00387|SM00388|SSF47384|SSF55874 Alide2_0049 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001155|IPR013785 Aldolase-type TIM barrel|NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF00724|SSF51395 Alide2_0050 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF13417|SSF47616|SSF52833 Alide2_0052 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005025|IPR029039 Flavoprotein-like superfamily|NADPH-dependent FMN reductase-like GO:0016491 G3DSA:3.40.50.360|PF03358|SSF52218 Alide2_0053 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002218|IPR004416|IPR020595|IPR026904|IPR036188 FAD/NAD(P)-binding domain superfamily|GidA associated domain 3|MnmG-related, conserved site|tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG|tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0002098|GO:0008033|GO:0050660 G3DSA:1.10.10.1800|G3DSA:1.10.150.570|G3DSA:3.50.50.60|MF_00129|PF01134|PF13932|PS01280|PS01281|SM01228|SSF51905|TIGR00136 Alide2_0055 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003682|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 G3DSA:3.40.50.150|MF_00074|PF02527|PIRSF003078|SSF53335|TIGR00138 Alide2_0056 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 Alide2_0057 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|PIRSF009320|PR00091|SSF52540 Alide2_0058 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010662|IPR029058 Alpha/Beta hydrolase fold|Putative hydrolase RBBP9/YdeN GO:0016787 G3DSA:3.40.50.1820|PF06821|SSF53474 Alide2_0059 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003115|IPR004437|IPR036086 ParB/RepB/Spo0J partition protein family|ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily GO:0003677 G3DSA:1.10.10.2830|G3DSA:3.90.1530.30|PF02195|SM00470|SSF109709|SSF110849|TIGR00180 Alide2_0060 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|SSF53335 Alide2_0061 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002477|IPR036365|IPR036366 PGBD superfamily|PGBD-like superfamily|Peptidoglycan binding-like G3DSA:1.10.101.10|PF01471|SSF47090 Alide2_0062 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003313|IPR009057|IPR011051|IPR014710|IPR018060|IPR018062 AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF02311|PF12833|PS00041|SM00342|SSF46689|SSF51182 Alide2_0063 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_0064 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006685|IPR010920|IPR011014|IPR011066|IPR023408 LSM domain superfamily|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS domain superfamily|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020|GO:0055085 G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|SSF50182|SSF82689|SSF82861 Alide2_0066 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004113|IPR006094|IPR016164|IPR016171|IPR036318 FAD linked oxidase, N-terminal|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2 GO:0003824|GO:0016491|GO:0050660|GO:0055114 G3DSA:1.10.45.10|G3DSA:3.30.465.40|G3DSA:3.30.70.2740|PF01565|PF02913|SSF55103|SSF56176 Alide2_0068 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016030|IPR029499|IPR036451 ATP:cob(I)alamin adenosyltransferase, PduO-type|Cobalamin adenosyltransferase-like|Cobalamin adenosyltransferase-like superfamily G3DSA:1.20.1200.10|PD007457|PF01923|SSF89028|TIGR00636 Alide2_0069 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 Alide2_0070 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003702|IPR017821|IPR026888|IPR037171|IPR038460 Acetyl-CoA hydrolase/transferase|Acetyl-CoA hydrolase/transferase C-terminal domain|Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily|NagB/RpiA transferase-like|Succinate CoA transferase GO:0003824|GO:0006084|GO:0016740 G3DSA:3.30.750.70|G3DSA:3.40.1080.10|G3DSA:3.40.1080.20|PF02550|PF13336|SSF100950|TIGR03458 Alide2_0071 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027392 Transcription factor zinc-finger PF13453 Alide2_0072 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_0073 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0074 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SSF51735 Alide2_0075 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SSF51735 Alide2_0076 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR029032 AhpD-like|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118 Alide2_0077 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006042|IPR006043 Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0016020|GO:0022857|GO:0055085 PF00860|PS01116|TIGR00801 Alide2_0078 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006342|IPR029063 Methyltransferase FkbM|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF05050|SSF53335|TIGR01444 Alide2_0079 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002938|IPR010971|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily|Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114|GO:0071949 G3DSA:3.30.9.50|G3DSA:3.50.50.60|PF01494|PR00420|SSF51905|TIGR01988 Alide2_0080 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR005914|IPR020845|IPR032387 AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetoacetyl-CoA synthase|Acetyl-coenzyme A synthetase, N-terminal domain GO:0003824|GO:0006629|GO:0030729 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF16177|PS00455|SSF56801|TIGR01217 Alide2_0081 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0082 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0083 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009100|IPR013786|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF02770|PF02771|PS00072|SSF56645 Alide2_0084 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|PF00441|PF02771|SSF47203|SSF56645 Alide2_0085 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_0086 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000462|IPR004533 CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--serine O-phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 G3DSA:1.20.120.1760|PF01066|PS00379|TIGR00473 Alide2_0090 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005526|IPR007874|IPR013033|IPR016098|IPR036145|IPR038061 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal|MinC, Proteobacteria, N-terminal domain superfamily|Septum formation inhibitor MinC|Septum formation inhibitor MinC, C-terminal|Septum formation inhibitor MinC, C-terminal domain superfamily|Septum formation inhibitor MinC, N-terminal GO:0000902|GO:0051302|GO:0051726|GO:1901891 G3DSA:2.160.20.70|G3DSA:3.30.750.120|MF_00267|PF03775|PF05209|SSF63848|TIGR01222 Alide2_0091 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002586|IPR010223|IPR025501|IPR027417 ATP binding protein MinD|ATP binding protein MinD, bacterial-type|CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0016887 G3DSA:3.40.50.300|PF01656|PIRSF003092|SSF52540|TIGR01968 Alide2_0092 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005527|IPR036707 Cell division topological specificity factor MinE|Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 G3DSA:3.30.1070.10|MF_00262|PF03776|SSF55229|TIGR01215 Alide2_0093 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0094 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0095 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013341|IPR013342|IPR018110|IPR029017|IPR029065|IPR036849 Enolase C-terminal domain-like|Enolase-like, C-terminal domain superfamily|Enolase-like, N-terminal|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme, N-terminal domain|Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF02746|PF13378|PS00908|SM00922|SSF51604|SSF54826 Alide2_0096 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002563|IPR012349 FMN-binding split barrel|Flavin reductase like domain GO:0010181|GO:0048037 G3DSA:2.30.110.10|PF01613|SM00903|SSF50475 Alide2_0097 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR000639|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like GO:0003824 G3DSA:3.40.50.1820|PF12697|PR00111|PR00412|SSF53474 Alide2_0098 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR023772|IPR036271 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|PS01081|SSF46689|SSF48498 Alide2_0099 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:3.40.50.620|PF00582|PR01438|SSF52402 Alide2_0100 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 PF00149|SSF56300 Alide2_0101 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0103 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008209|IPR008210|IPR013035|IPR018091|IPR035077|IPR035078 Phosphoenolpyruvate carboxykinase, C-terminal|Phosphoenolpyruvate carboxykinase, GTP-utilising|Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal|Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal|Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site|Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0004613|GO:0005525|GO:0006094|GO:0017076 G3DSA:2.170.8.10|G3DSA:3.40.449.10|G3DSA:3.90.228.20|MF_00452|PF00821|PF17297|PIRSF001348|PS00505|SSF53795|SSF68923 Alide2_0105 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001926|IPR002912|IPR005789|IPR036052 ACT domain|Pyridoxal-phosphate dependent enzyme|Threonine dehydratase, catabolic|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004794|GO:0006567 G3DSA:3.30.70.260|G3DSA:3.40.50.1100|PF00291|PF13291|SSF53686|SSF55021|TIGR01127 Alide2_0106 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR036250 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0055114 G3DSA:1.20.140.10|G3DSA:2.40.110.20|PF00441|PF02770|PS00073|SSF47203|SSF56645 Alide2_0107 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR004014|IPR006068|IPR006415|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR036412 Cation-transporting P-type ATPase, C-terminal|Cation-transporting P-type ATPase, N-terminal|HAD superfamily|HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IIIB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0015444|GO:0015693|GO:0016021 G3DSA:1.20.1110.10|G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00689|PF00690|PF00702|PR01836|PS00154|SM00831|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01524 Alide2_0108 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003726|IPR017226|IPR036589 Betaine-homocysteine S-methyltransferase, BHMT|Homocysteine-binding domain|Homocysteine-binding domain superfamily GO:0005737|GO:0008270|GO:0009086|GO:0047150 G3DSA:3.20.20.330|PF02574|PIRSF037505|SSF82282 Alide2_0109 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0110 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|SSF47203|SSF56645 Alide2_0111 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011051|IPR013096|IPR014710 Cupin 2, conserved barrel|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF07883|SSF51182 Alide2_0112 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0113 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001650|IPR002121|IPR004589|IPR006293|IPR010997|IPR011545|IPR014001|IPR018982|IPR027417|IPR032284|IPR036388 ATP-dependent DNA helicase RecQ, zinc-binding domain|DEAD/DEAH box helicase domain|DNA helicase, ATP-dependent, RecQ type|DNA helicase, ATP-dependent, RecQ type, bacterial|HRDC domain|HRDC-like superfamily|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|RQC domain|Winged helix-like DNA-binding domain superfamily GO:0000166|GO:0003676|GO:0003824|GO:0004003|GO:0005524|GO:0005622|GO:0006260|GO:0006281|GO:0006310|GO:0008026|GO:0009432|GO:0043140|GO:0044237 G3DSA:1.10.10.10|G3DSA:1.10.150.80|G3DSA:3.40.50.300|PF00270|PF00271|PF00570|PF09382|PF16124|SM00341|SM00487|SM00490|SM00956|SSF47819|SSF52540|TIGR00614|TIGR01389 Alide2_0114 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007197|IPR012840|IPR013785 Aldolase-type TIM barrel|Anaerobic ribonucleoside-triphosphate reductase activating protein|Radical SAM GO:0003824|GO:0051536 G3DSA:3.20.20.70|PF04055|PF13353|SSF102114|TIGR02495 Alide2_0115 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 PF13597 Alide2_0116 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005144|IPR012833 ATP-cone domain|Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 G3DSA:3.20.70.20|PF03477|PF13597|SSF51998|TIGR02487 Alide2_0117 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR001610|IPR001633|IPR013656|IPR029787|IPR033425|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GGDEF domain|Membrane-associated sensor domain MASE3|Nucleotide cyclase|PAC motif|PAS domain|PAS domain superfamily|PAS fold-4 G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF08448|PF13426|PF17159|SM00052|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254 Alide2_0118 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012312 Haemerythrin-like G3DSA:1.20.120.520|PF01814 Alide2_0119 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000883|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|SSF81442 Alide2_0120 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002078|IPR002197|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417|IPR029016 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|GAF-like domain superfamily|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF02954|PS00675|PS00676|PS00688|SM00382|SSF46689|SSF52540|SSF55781 Alide2_0121 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012674|IPR014602|IPR014878 Calycin|Domain of unknown function DUF1794|Uncharacterised conserved protein UCP036226 G3DSA:2.40.128.20|PF08768|PIRSF036226|SSF50814 Alide2_0122 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004644|IPR005130|IPR005131|IPR029009 Allosteric substrate binding domain superfamily|Iron-sulphur-dependent L-serine dehydratase single chain form|Serine dehydratase beta chain|Serine dehydratase-like, alpha subunit GO:0003941|GO:0006094|GO:0051539 G3DSA:3.30.1330.90|PF03313|PF03315|SSF143548|TIGR00720 Alide2_0123 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0124 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_0125 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0126 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 Alide2_0127 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0128 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0129 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|SSF47203|SSF56645 Alide2_0130 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_0131 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020613|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00737|SSF53901|TIGR01930 Alide2_0132 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00081|PS00061|SM00822|SSF51735 Alide2_0133 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0134 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SSF51735 Alide2_0136 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_0137 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0138 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002878|IPR012340|IPR022002 Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold PF01796|PF12172|SSF50249 Alide2_0139 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF02803|PIRSF000429|SSF53901 Alide2_0140 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|SSF47203|SSF56645 Alide2_0141 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|SSF56801 Alide2_0142 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069|IPR039569 HotDog domain superfamily|MaoC-like dehydratase domain|N-terminal of MaoC-like dehydratase G3DSA:3.10.129.10|PF01575|PF13452|SSF54637 Alide2_0143 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_0144 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0145 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_0146 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_0147 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR011206|IPR015813 Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|PIRSF015582|SSF51621 Alide2_0148 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0149 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|G3DSA:3.30.1330.120|PF03972|SSF103378 Alide2_0150 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0151 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00073|SSF47203|SSF56645 Alide2_0152 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029069|IPR039569 HotDog domain superfamily|N-terminal of MaoC-like dehydratase G3DSA:3.10.129.10|PF13452|SSF54637 Alide2_0153 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_0154 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069|IPR039569 HotDog domain superfamily|MaoC-like dehydratase domain|N-terminal of MaoC-like dehydratase G3DSA:3.10.129.10|PF01575|PF13452|SSF54637 Alide2_0155 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_0156 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003702|IPR026888|IPR037171|IPR038460 Acetyl-CoA hydrolase/transferase|Acetyl-CoA hydrolase/transferase C-terminal domain|Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily|NagB/RpiA transferase-like GO:0003824|GO:0006084 G3DSA:3.30.750.70|G3DSA:3.40.1080.10|G3DSA:3.40.1080.20|PF02550|PF13336|SSF100950 Alide2_0157 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|SSF53901|TIGR01930 Alide2_0158 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_0159 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0160 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735 Alide2_0161 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0162 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_0163 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0164 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR011650|IPR017439|IPR036264 Amidohydrolase|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|SSF53187|SSF55031|TIGR01891 Alide2_0165 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0166 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_0167 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0168 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|SSF53850 Alide2_0169 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR011650|IPR017439|IPR036264 Amidohydrolase|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|SSF53187|SSF55031|TIGR01891 Alide2_0170 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002878|IPR012340|IPR022002 Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold G3DSA:1.10.12.20|PF01796|PF12172|SSF50249 Alide2_0171 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF02803|PIRSF000429|SSF53901 Alide2_0172 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 Alide2_0173 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 Alide2_0174 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF09339|SM00346|SSF46785|SSF55781 Alide2_0175 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0176 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SSF51735 Alide2_0177 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|SSF47203|SSF56645 Alide2_0178 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029045|IPR034733 Acetyl-CoA carboxylase|ClpP/crotonase-like domain superfamily G3DSA:3.90.226.10|PF01039|SSF52096 Alide2_0179 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 Alide2_0180 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_0181 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR001882|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR016185 Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin-binding site|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif|Single hybrid motif GO:0005524 G3DSA:2.40.50.100|G3DSA:3.30.470.130|PF00289|PF00364|PF02785|PF02786|PS00188|PS00866|PS00867|SM00878|SSF51230|SSF51246|SSF52440|SSF56059 Alide2_0182 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010839 Acyclic terpene utilisation PF07287 Alide2_0183 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0184 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0185 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_0186 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0187 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_0188 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0189 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0190 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006095|IPR006096|IPR006097|IPR014362|IPR033524|IPR036291 Glutamate dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal|Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain|Leu/Phe/Val dehydrogenases active site|NAD(P)-binding domain superfamily GO:0006520|GO:0016491|GO:0016639|GO:0055114 G3DSA:1.10.8.1210|G3DSA:3.40.50.10860|G3DSA:3.40.50.720|PF00208|PF02812|PIRSF000185|PR00082|PS00074|SM00839|SSF51735|SSF53223 Alide2_0191 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007896 Chlorhexidine efflux transporter PF05232 Alide2_0192 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009722 SdiA-regulated PF06977|SSF50956 Alide2_0193 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000489|IPR003759|IPR004223|IPR006158|IPR011005|IPR011822|IPR036594|IPR036724|IPR037010 Cobalamin (vitamin B12)-binding domain|Cobalamin (vitamin B12)-binding module, cap domain|Cobalamin-binding domain superfamily|Cobalamin-dependent methionine synthase|Dihydropteroate synthase-like|Methionine synthase domain|Pterin-binding domain|Vitamin B12-dependent methionine synthase, activation domain|Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008270|GO:0008705|GO:0009086|GO:0031419|GO:0042558|GO:0044237|GO:0046872 G3DSA:1.10.1240.10|G3DSA:1.10.288.10|G3DSA:3.10.196.10|G3DSA:3.20.20.20|G3DSA:3.40.50.280|PF00809|PF02310|PF02607|PF02965|PIRSF000381|SM01018|SSF47644|SSF51717|SSF52242|SSF56507|TIGR02082 Alide2_0194 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003615|IPR028629|IPR036397 CRISPR-associated endonuclease Cas9|HNH nuclease|Ribonuclease H superfamily GO:0003676|GO:0004519 G3DSA:3.30.420.10|MF_01480|PF13395|TIGR01865 Alide2_0195 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002729|IPR019855 CRISPR-associated protein Cas1|CRISPR-associated protein Cas1, NMENI subtype GO:0003676|GO:0004519|GO:0004520|GO:0043571|GO:0046872|GO:0051607 G3DSA:1.20.120.920|MF_01470|PF01867|TIGR00287|TIGR03639 Alide2_0196 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019199|IPR021127 CRISPR-associated endonuclease Cas2|Virulence-associated protein D / CRISPR associated protein Cas2 GO:0004521|GO:0043571 PF09827|SSF143430|TIGR01573 Alide2_0198 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004291|IPR024463|IPR024474|IPR039552 Transposase IS66, C-terminal|Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66 PF03050|PF13005|PF13007|PF13817 Alide2_0199 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008878 Transposase IS66, Orf2 PF05717 Alide2_0200 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR010921 Transposase IS3/IS911family|Trp repressor/replication initiator GO:0003677|GO:0004803|GO:0006313|GO:0043565 PF01527|SSF48295 Alide2_0202 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_0204 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000623|IPR023000|IPR027417|IPR031322 P-loop containing nucleoside triphosphate hydrolase|Shikimate kinase, conserved site|Shikimate kinase/Threonine synthase-like 1|Shikimate kinase/gluconokinase G3DSA:3.40.50.300|MF_00109|PF01202|PR01100|PS01128|SSF52540 Alide2_0205 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017039 Virulence factor BrkB PF03631|PIRSF035875 Alide2_0206 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008816 Glycine zipper 2TM domain GO:0019867 PF05433 Alide2_0207 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001433|IPR001709|IPR008333|IPR017938|IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF00175|PF00970|PR00371|SSF52343|SSF63380 Alide2_0208 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 Alide2_0209 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_0210 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|PS00211|SM00382|SSF52540 Alide2_0211 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000668|IPR023346|IPR029058|IPR036365|IPR038765 Alpha/Beta hydrolase fold|Lysozyme-like domain superfamily|PGBD-like superfamily|Papain-like cysteine peptidase superfamily|Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 G3DSA:1.10.530.70|G3DSA:3.90.70.10|PF00112|SM00645|SSF47090|SSF53474|SSF53955|SSF54001 Alide2_0214 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000523|IPR003593|IPR004482|IPR020568|IPR025158|IPR027417 AAA+ ATPase domain|Magnesium chelatase ChlI domain|Mg chelatase-related protein|Mg chelatase-related protein, C-terminal domain|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold G3DSA:3.40.50.300|PF01078|PF13335|PF13541|SM00382|SSF52540|SSF54211|TIGR00368 Alide2_0215 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010239 Conserved hypothetical protein CHP02001 PF09694|TIGR02001 Alide2_0216 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002187|IPR002332|IPR011322|IPR015867|IPR017918 Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein P-II, urydylation site|Nitrogen regulatory protein PII|Nitrogen regulatory protein PII, conserved site|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0006808|GO:0030234 G3DSA:3.30.70.120|PF00543|PIRSF039144|PR00340|PS00496|PS00638|SM00938|SSF54913 Alide2_0217 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001905|IPR002229|IPR018047|IPR024041|IPR029020 Ammonium transporter|Ammonium transporter AmtB-like domain|Ammonium transporter, conserved site|Ammonium/urea transporter|Blood group Rhesus C/E/D polypeptide GO:0008519|GO:0015696|GO:0016020|GO:0072488 G3DSA:1.10.3430.10|PF00909|PR00342|PS01219|SSF111352|TIGR00836 Alide2_0218 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_0221 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_0223 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006115|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|SSF48179|SSF51735 Alide2_0224 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 Alide2_0226 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007820|IPR017516 AbrB duplication|AbrB family GO:0010468|GO:0016021 PF05145|PIRSF038991|TIGR03082 Alide2_0228 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_0229 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0230 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003781|IPR013815|IPR016102|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF56059 Alide2_0231 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004113|IPR006094|IPR016164|IPR016169|IPR016171|IPR036318 FAD linked oxidase, N-terminal|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2 GO:0003824|GO:0016491|GO:0050660|GO:0055114 G3DSA:1.10.45.10|G3DSA:3.30.465.10|PF01565|PF02913|SSF55103|SSF56176 Alide2_0232 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010699 Protein of unknown function DUF1275 PF06912 Alide2_0233 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004017|IPR009051|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Cysteine-rich domain GO:0051536 G3DSA:1.10.1060.10|PF02754|PF12838|PIRSF000139|PS00198|SSF46548 Alide2_0234 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016103|IPR036442 ProQ/FinO domain|ProQ/FinO domain superfamily G3DSA:1.10.1710.10|PF04352|SM00945|SSF48657 Alide2_0235 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_0236 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_0237 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000821|IPR001608|IPR009006|IPR011079|IPR020622|IPR029066 Alanine racemase|Alanine racemase, C-terminal|Alanine racemase, N-terminal|Alanine racemase, pyridoxal-phosphate attachment site|Alanine racemase/group IV decarboxylase, C-terminal|PLP-binding barrel GO:0003824|GO:0006522|GO:0008784 G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_01201|PF00842|PF01168|PR00992|PS00395|SM01005|SSF50621|SSF51419|TIGR00492 Alide2_0238 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004852|IPR009056|IPR026259|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Di-c-type haem protein, MauG/cytochrome c peroxidase|Di-haem cytochrome c peroxidase GO:0009055|GO:0016491|GO:0020037|GO:0055114 G3DSA:1.10.760.10|PF00034|PF03150|PIRSF000294|SSF46626 Alide2_0239 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF02798|PF14497|SSF47616|SSF52833 Alide2_0240 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR004504|IPR014721|IPR020568|IPR027417 AAA+ ATPase domain|DNA repair protein RadA|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0003684|GO:0005524|GO:0006281 G3DSA:3.30.230.10|G3DSA:3.40.50.300|MF_01498|PF13481|PR01874|SM00382|SSF52540|SSF54211|TIGR00416 Alide2_0241 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082 Alide2_0242 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain G3DSA:3.90.1300.10|PF01425|SSF75304 Alide2_0244 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001544|IPR005785|IPR018300|IPR036038 Aminotransferase class IV|Aminotransferase, class IV, conserved site|Aminotransferase-like, PLP-dependent enzymes|Branched-chain amino acid aminotransferase I GO:0003824|GO:0004084|GO:0009081 G3DSA:3.20.10.10|G3DSA:3.30.470.10|PF01063|PS00770|SSF56752|TIGR01122 Alide2_0245 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019401 Zinc finger, CHCC-type G3DSA:2.60.260.40|PF10276 Alide2_0246 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007016 O-antigen ligase-related PF04932 Alide2_0247 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 Alide2_0248 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 Alide2_0249 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008441|IPR029044 Capsular polysaccharide synthesis protein|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.20|PF05704|SSF53448 Alide2_0250 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 Alide2_0251 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0252 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010645|IPR036259 MFS transporter superfamily|Uncharacterised MFS-type transporter YbfB G3DSA:1.20.1250.20|PF06779|SSF103473 Alide2_0253 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005163|IPR005302|IPR011037 3-alpha domain|Molybdenum cofactor sulfurase, C-terminal|Pyruvate kinase-like, insert domain superfamily GO:0003824|GO:0030151|GO:0030170 G3DSA:2.40.33.20|PF03473|PF03475|SSF50800 Alide2_0254 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000866|IPR036249 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Thioredoxin-like superfamily GO:0016209|GO:0016491|GO:0055114 G3DSA:3.40.30.10|PF00578|SSF52833 Alide2_0255 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013538|IPR023393 Activator of Hsp90 ATPase homologue 1-like|START-like domain superfamily G3DSA:3.30.530.20|PF08327|SSF55961 Alide2_0256 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 Alide2_0257 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0258 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_0259 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0260 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003660|IPR003661|IPR004358|IPR036097|IPR036890 HAMP domain|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PR00344|SM00304|SM00387|SM00388|SSF158472|SSF47384|SSF55874 Alide2_0261 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 Alide2_0262 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_0263 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011051|IPR013096|IPR014710|IPR018060 Cupin 2, conserved barrel|DNA binding HTH domain, AraC-type|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF07883|PF12833|SM00342|SSF51182 Alide2_0264 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_0265 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001915 Peptidase M48 GO:0004222|GO:0006508 PF01435 Alide2_0268 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 Alide2_0269 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002078|IPR002197|IPR003593|IPR004096|IPR009057|IPR010523|IPR024096|IPR025662|IPR025943|IPR027417 4-vinyl reductase, 4VR|AAA+ ATPase domain|Activator of aromatic catabolism|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|NO signalling/Golgi transport ligand-binding domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2 GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.1380.20|G3DSA:3.40.50.300|PD485437|PF00158|PF02830|PF02954|PF06505|PR01590|PS00675|PS00676|SM00382|SM00989|SSF111126|SSF46689|SSF52540 Alide2_0270 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010353 Phenol hydroxylase subunit PD468738|PF06099 Alide2_0271 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003430|IPR009078|IPR012078|IPR012348 Ferritin-like superfamily|Methane/phenol monooxygenase, hydroxylase component|Methane/phenol/toluene hydroxylase|Ribonucleotide reductase-like GO:0006725|GO:0016491|GO:0016709|GO:0055114 G3DSA:1.10.620.20|PF02332|PIRSF000040|SSF47240 Alide2_0272 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003454|IPR036889 Monooxygenase component MmoB/DmpM|Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 G3DSA:3.90.56.10|PD004249|PF02406|SSF56029 Alide2_0273 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003430|IPR007029|IPR009078|IPR012348 Ferritin-like superfamily|Methane/phenol/toluene hydroxylase|Ribonucleotide reductase-like|YHS domain GO:0006725|GO:0016491|GO:0055114 G3DSA:1.10.620.20|PF02332|PF04945|SSF47240 Alide2_0274 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006756 Phenol hydroxylase G3DSA:3.10.20.560|PF04663 Alide2_0275 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001041|IPR001221|IPR001433|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00410|SSF52343|SSF54292|SSF63380 Alide2_0276 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001041|IPR006058|IPR012675|IPR036010 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily GO:0009055|GO:0051536|GO:0051537 G3DSA:3.10.20.30|PF00111|PS00197|SSF54292 Alide2_0277 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000486|IPR004360|IPR017624|IPR029068 Catechol 2,3 dioxygenase|Extradiol ring-cleavage dioxygenase, class I /II|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain GO:0003824|GO:0006725|GO:0008198|GO:0018577|GO:0019439|GO:0055114 G3DSA:3.10.180.10|PF00903|PS00082|SSF54593|TIGR03211 Alide2_0278 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005624|IPR038084 GlcG-like domain superfamily|Haem-degrading G3DSA:3.30.450.150|PF03928|SSF143744 Alide2_0279 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025737 MetA-pathway of phenol degradation, putative PF13557 Alide2_0280 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR017628|IPR029510 2-hydroxymuconic semialdehyde dehydrogenase|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720|TIGR03216 Alide2_0281 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF00561|PR00111|SSF53474 Alide2_0282 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011234|IPR017632|IPR036663 2-oxopent-4-enoate hydratase|Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529|TIGR03220 Alide2_0283 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000534|IPR003361|IPR015426|IPR036291 Acetaldehyde dehydrogenase|Acetaldehyde dehydrogenase, C-terminal|NAD(P)-binding domain superfamily|Semialdehyde dehydrogenase, NAD-binding GO:0008774|GO:0016620|GO:0019439|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_01657|PF01118|PF09290|PIRSF015689|SM00859|SSF51735|SSF55347|TIGR03215 Alide2_0284 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000891|IPR012425|IPR013785|IPR017629 4-hydroxy-2-oxovalerate aldolase|Aldolase-type TIM barrel|DmpG-like communication|Pyruvate carboxyltransferase GO:0003824|GO:0008701|GO:0016833|GO:0019439 G3DSA:1.10.8.60|G3DSA:3.20.20.70|MF_01656|PD005364|PF00682|PF07836|SSF51569|SSF89000|TIGR03217 Alide2_0285 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011234|IPR017630|IPR036663 4-oxalocrotonate decarboxylase|Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529|TIGR03218 Alide2_0286 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0287 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004370|IPR014347|IPR018191 4-oxalocrotonate tautomerase|4-oxalocrotonate tautomerase, Pseudomonas-type|Tautomerase/MIF superfamily GO:0006725|GO:0016853 G3DSA:3.30.429.10|PF01361|SSF55331|TIGR00013 Alide2_0288 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 Alide2_0289 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_0290 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0291 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 Alide2_0292 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0293 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005493|IPR036704 Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.100|PF03737|SSF89562 Alide2_0294 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006139|IPR006140|IPR029753|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|PS00670|PS00671|SSF51735|SSF52283 Alide2_0295 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0296 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0297 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 Alide2_0298 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005511|IPR011042|IPR013658 SMP-30/Gluconolactonase/LRE-like region|Senescence marker protein-30 (SMP-30)|Six-bladed beta-propeller, TolB-like G3DSA:2.120.10.30|PF08450|PR01790|SSF63829 Alide2_0299 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0300 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006115|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|SSF48179|SSF51735 Alide2_0301 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|SSF53720 Alide2_0302 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_0304 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF00561|SSF53474 Alide2_0305 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 Alide2_0306 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_0307 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_0308 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_0309 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_0310 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 Alide2_0311 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 Alide2_0312 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|SSF47203|SSF56645 Alide2_0313 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SSF51735 Alide2_0314 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002575|IPR011009 Aminoglycoside phosphotransferase|Protein kinase-like domain superfamily G3DSA:3.30.200.20|G3DSA:3.90.1200.10|PF01636|SSF56112 Alide2_0315 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004808|IPR005135|IPR036691 AP endonuclease 1|Endonuclease/exonuclease/phosphatase|Endonuclease/exonuclease/phosphatase superfamily GO:0004518|GO:0006281 G3DSA:3.60.10.10|PF03372|SSF56219|TIGR00195|TIGR00633 Alide2_0316 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR004467|IPR023031|IPR029057 Orotate phosphoribosyl transferase domain|Orotate phosphoribosyltransferase|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0004588|GO:0006221|GO:0009116 G3DSA:3.40.50.2020|MF_01208|PF00156|SSF53271|TIGR00336 Alide2_0318 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003789|IPR004413|IPR006075|IPR014746|IPR017958|IPR018027|IPR023168 Asn/Gln amidotransferase|Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic|Aspartyl/glutamyl-tRNA amidotransferase subunit B-like|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit|Glutamine synthetase/guanido kinase, catalytic domain|Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0003824|GO:0016874|GO:0016884 G3DSA:1.10.10.410|G3DSA:1.10.150.380|MF_00121|PF02637|PF02934|PS01234|SM00845|SSF55931|SSF89095|TIGR00133 Alide2_0319 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004412|IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain|Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 G3DSA:3.90.1300.10|MF_00120|PF01425|SSF75304|TIGR00132 Alide2_0320 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003837|IPR036113 Glu-tRNAGln amidotransferase C subunit|Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 G3DSA:1.10.20.60|MF_00122|PF02686|SSF141000|TIGR00135 Alide2_0321 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004753 Cell shape determining protein MreB GO:0000902 G3DSA:3.30.420.40|G3DSA:3.90.640.10|PF06723|PR01652|SSF53067|TIGR00904 Alide2_0322 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007221 Rod shape-determining protein MreC GO:0008360 G3DSA:2.40.10.340|G3DSA:2.40.10.350|PF04085|PIRSF038471|TIGR00219 Alide2_0323 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007227|IPR026034 Cell shape-determining protein MreD|Cell shape-determining protein MreD, proteobacterial type GO:0008360|GO:0016021 PF04093|PIRSF018472|TIGR03426 Alide2_0324 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001460|IPR005311|IPR012338|IPR017790|IPR036138 Beta-lactamase/transpeptidase-like|Penicillin-binding protein 2|Penicillin-binding protein, dimerisation domain|Penicillin-binding protein, dimerisation domain superfamily|Penicillin-binding protein, transpeptidase GO:0008658|GO:0009002|GO:0009252|GO:0016020 G3DSA:3.30.1390.30|G3DSA:3.40.710.10|G3DSA:3.90.1310.10|MF_02081|PF00905|PF03717|SSF56519|SSF56601|TIGR03423 Alide2_0325 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006035|IPR014033|IPR020855|IPR023696 Arginase|Ureohydrolase|Ureohydrolase domain superfamily|Ureohydrolase, manganese-binding site GO:0004053|GO:0006525|GO:0016813|GO:0046872 G3DSA:3.40.800.10|PF00491|PIRSF036979|PR00116|PS01053|SSF52768|TIGR01229 Alide2_0326 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 Alide2_0327 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000172|IPR007867|IPR012132|IPR036188 FAD/NAD(P)-binding domain superfamily|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 G3DSA:3.30.560.10|G3DSA:3.50.50.60|PF00732|PF05199|PIRSF000137|PS00624|SSF51905|SSF54373 Alide2_0328 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003453|IPR030802 ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE GO:0043190 PF02405|TIGR00056 Alide2_0329 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 Alide2_0330 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003399 Mce/MlaD PF02470 Alide2_0331 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005586 ABC-type transport auxiliary lipoprotein component G3DSA:3.40.50.10610|PF03886|SSF159594 Alide2_0333 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_0334 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000573|IPR001030|IPR015928|IPR015931|IPR036008 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase, swivel G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.30.499.20|PF00330|PF00694|PR00415|SSF52016|SSF53732 Alide2_0335 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0336 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005493|IPR036704 Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.40|PF03737|SSF89562 Alide2_0337 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PF01914|TIGR00427 Alide2_0338 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002925|IPR029058 Alpha/Beta hydrolase fold|Dienelactone hydrolase GO:0016787 G3DSA:3.40.50.1820|PF01738|SSF53474 Alide2_0339 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004638|IPR011701|IPR036259 Drug resistance transporter EmrB/QacA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00711 Alide2_0340 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032317|IPR039562 Membrane fusion protein, biotin-lipoyl like domain|RND efflux pump, membrane fusion protein, barrel-sandwich domain G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.50.100|PF13533|PF16576|SSF111369 Alide2_0341 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_0342 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12802|SM00347|SSF46785 Alide2_0343 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 G3DSA:1.20.58.340|PF01544|SSF143865|SSF144083 Alide2_0344 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001731|IPR013785|IPR030656 Aldolase-type TIM barrel|Delta-aminolevulinic acid dehydratase|Delta-aminolevulinic acid dehydratase, active site GO:0003824|GO:0004655|GO:0033014|GO:0046872 G3DSA:3.20.20.70|PF00490|PIRSF001415|PR00144|PS00169|SM01004|SSF51569 Alide2_0345 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.30.930.10|SSF55681 Alide2_0346 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005265 Uncharacterised protein family UPF0093 PF03653|PIRSF004638 Alide2_0347 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006976 VanZ-like PF04892 Alide2_0348 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036249 Thioredoxin-like superfamily G3DSA:3.40.30.10|SSF52833 Alide2_0349 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022742|IPR029058 Alpha/Beta hydrolase fold|Serine aminopeptidase, S33 G3DSA:3.40.50.1820|PF12146|SSF53474 Alide2_0350 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001967|IPR012338|IPR012907|IPR015956|IPR018044|IPR037167 Beta-lactamase/transpeptidase-like|D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily|Penicillin-binding protein, C-terminal domain superfamily|Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0004180|GO:0006508|GO:0009002 G3DSA:2.60.410.10|G3DSA:3.40.710.10|PF00768|PF07943|PR00725|SM00936|SSF56601|SSF69189 Alide2_0351 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005679|IPR006032|IPR012340 Nucleic acid-binding, OB-fold|Ribosomal protein S12, bacterial-type|Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935 G3DSA:2.40.50.140|MF_00403_B|PF00164|PIRSF002133|PR01034|PS00055|SSF50249|TIGR00981 Alide2_0352 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000235|IPR005717|IPR020606|IPR023798|IPR036823 Ribosomal protein S5/S7|Ribosomal protein S7 domain|Ribosomal protein S7 domain superfamily|Ribosomal protein S7, bacterial/organellar-type|Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412|GO:0015935 G3DSA:1.10.455.10|MF_00480_B|PF00177|PIRSF002122|PS00052|SSF47973|TIGR01029 Alide2_0353 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000640|IPR000795|IPR004161|IPR004540|IPR005225|IPR005517|IPR009000|IPR014721|IPR020568|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFG/EF2|Translation elongation factor EFG/EF2, domain IV|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.30.230.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00054_B|PF00009|PF00679|PF03144|PF03764|PF14492|PR00315|PS00301|SM00838|SM00889|SSF50447|SSF52540|SSF54211|SSF54980|TIGR00231|TIGR00484 Alide2_0354 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu-like, domain 2|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485 Alide2_0355 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001848|IPR018268|IPR027486|IPR036838 Ribosomal protein S10|Ribosomal protein S10 domain|Ribosomal protein S10 domain superfamily|Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.70.600|MF_00508|PF00338|PR00971|PS00361|SM01403|SSF54999|TIGR01049 Alide2_0356 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000597|IPR009000|IPR019926|IPR019927 Ribosomal protein L3|Ribosomal protein L3, bacterial/organelle-type|Ribosomal protein L3, conserved site|Translation protein, beta-barrel domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.30.10|G3DSA:2.40.50.620|MF_01325_B|PF00297|PS00474|SSF50447|TIGR03625 Alide2_0357 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002136|IPR013005|IPR023574 50S ribosomal protein uL4|Ribosomal protein L4 domain superfamily|Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 G3DSA:3.40.1370.10|MF_01328_B|PF00573|SSF52166|TIGR03953 Alide2_0358 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012677|IPR012678|IPR013025 Nucleotide-binding alpha-beta plait domain superfamily|Ribosomal protein L23/L15e core domain superfamily|Ribosomal protein L25/L23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.70.330|MF_01369_B|PF00276|SSF54189 Alide2_0359 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002171|IPR005880|IPR008991|IPR012340|IPR014722|IPR014726|IPR022666|IPR022669|IPR022671 Nucleic acid-binding, OB-fold|Ribosomal Proteins L2, RNA binding domain|Ribosomal protein L2|Ribosomal protein L2, C-terminal|Ribosomal protein L2, bacterial/organellar-type|Ribosomal protein L2, conserved site|Ribosomal protein L2, domain 2|Ribosomal protein L2, domain 3|Translation protein SH3-like domain superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934|GO:0016740 G3DSA:2.30.30.30|G3DSA:2.40.50.140|G3DSA:4.10.950.10|MF_01320_B|PF00181|PF03947|PIRSF002158|PS00467|SM01382|SM01383|SSF50104|SSF50249|TIGR01171 Alide2_0360 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002222|IPR005732|IPR020934|IPR023575 Ribosomal protein S19 conserved site|Ribosomal protein S19, bacterial-type|Ribosomal protein S19, superfamily|Ribosomal protein S19/S15 GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.860.10|MF_00531|PF00203|PIRSF002144|PR00975|PS00323|SSF54570|TIGR01050 Alide2_0361 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001063|IPR005727|IPR018260|IPR036394 Ribosomal protein L22, bacterial/chloroplast-type|Ribosomal protein L22/L17|Ribosomal protein L22/L17 superfamily|Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934 G3DSA:3.90.470.10|MF_01331_B|PF00237|PS00464|SSF54843|TIGR01044 Alide2_0362 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001351|IPR004044|IPR004087|IPR005704|IPR009019|IPR015946|IPR018280|IPR036419 K Homology domain|K Homology domain, type 2|K homology domain superfamily, prokaryotic type|K homology domain-like, alpha/beta|Ribosomal protein S3, C-terminal|Ribosomal protein S3, C-terminal domain superfamily|Ribosomal protein S3, bacterial|Ribosomal protein S3, conserved site GO:0003676|GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.1140.32|G3DSA:3.30.300.20|MF_01309_B|PF00189|PF07650|PS00548|SM00322|SSF54814|SSF54821|TIGR01009 Alide2_0363 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000114|IPR016180|IPR020798|IPR036920 Ribosomal protein L10e/L16|Ribosomal protein L10e/L16 superfamily|Ribosomal protein L16|Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.90.1170.10|MF_01342|PF00252|PR00060|PS00586|SSF54686|TIGR01164 Alide2_0364 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001854|IPR018254|IPR036049 Ribosomal protein L29, conserved site|Ribosomal protein L29/L35|Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.287.310|MF_00374|PF00831|PS00579|SSF46561|TIGR00012 Alide2_0365 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000266|IPR012340|IPR019979|IPR019984 30S ribosomal protein S17|Nucleic acid-binding, OB-fold|Ribosomal protein S17, conserved site|Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.140|MF_01345_B|PD001295|PF00366|PR00973|PS00056|SSF50249|TIGR03635 Alide2_0366 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013740|IPR036249 Redoxin|Thioredoxin-like superfamily GO:0016491 G3DSA:3.40.30.10|PF08534|SSF52833 Alide2_0367 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 Alide2_0368 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 G3DSA:1.20.950.20|PF01292|SSF81342 Alide2_0369 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013740|IPR036249 Redoxin|Thioredoxin-like superfamily GO:0016491 G3DSA:3.40.30.10|PF08534|SSF52833 Alide2_0371 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004701|IPR036662 Phosphotransferase system, mannose-type IIA component|Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 G3DSA:3.40.50.510|PF03610|SSF53062 Alide2_0372 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000032|IPR001020|IPR002114|IPR035895 HPr-like superfamily|Phosphocarrier protein HPr-like|Phosphotransferase system, HPr histidine phosphorylation site|Phosphotransferase system, HPr serine phosphorylation site G3DSA:3.30.1340.10|PF00381|PR00107|PS00369|PS00589|SSF55594|TIGR01003 Alide2_0373 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000121|IPR006318|IPR008279|IPR008731|IPR015813|IPR018274|IPR023151|IPR024692|IPR036618|IPR036637 PEP-utilising enzyme, C-terminal|PEP-utilising enzyme, active site|PEP-utilising enzyme, conserved site|PEP-utilising enzyme, mobile domain|Phosphohistidine domain superfamily|Phosphotransferase system, enzyme I|Phosphotransferase system, enzyme I N-terminal|Phosphotransferase system, enzyme I-like|PtsI, HPr-binding domain superfamily|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0008965|GO:0009401|GO:0016310|GO:0016772 G3DSA:1.10.274.10|G3DSA:3.20.20.60|G3DSA:3.50.30.10|PF00391|PF02896|PF05524|PIRSF000732|PR01736|PS00370|PS00742|SSF47831|SSF51621|SSF52009|TIGR01417 Alide2_0374 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003698|IPR006638|IPR007197|IPR013785|IPR031691 Aldolase-type TIM barrel|Elp3/MiaB/NifB|Lipoyl synthase|Lipoyl synthase, N-terminal|Radical SAM GO:0003824|GO:0009107|GO:0016992|GO:0051536|GO:0051539 G3DSA:3.20.20.70|MF_00206|PF04055|PF16881|PIRSF005963|SM00729|SSF102114|TIGR00510 Alide2_0375 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000544|IPR004143|IPR020605 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain|Octanoyltransferase|Octanoyltransferase, conserved site GO:0006464|GO:0009249|GO:0033819 G3DSA:3.30.930.10|MF_00013|PD006086|PF03099|PIRSF016262|PS01313|SSF55681|TIGR00214 Alide2_0376 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007454|IPR027471 Uncharacterised protein family UPF0250|YbeD-like domain superfamily G3DSA:3.30.70.260|MF_00659|PF04359|SSF117991 Alide2_0377 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005598 ATP synthase protein I PF03899 Alide2_0378 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000568|IPR023011|IPR035908 ATP synthase, F0 complex, subunit A|ATP synthase, F0 complex, subunit A superfamily|ATP synthase, F0 complex, subunit A, active site GO:0015078|GO:0015986|GO:0045263 G3DSA:1.20.120.220|MF_01393|PF00119|PS00449|SSF81336|TIGR01131 Alide2_0379 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000454|IPR002379|IPR005953|IPR020537|IPR035921|IPR038662 ATP synthase, F0 complex, subunit C|ATP synthase, F0 complex, subunit C, DCCD-binding site|ATP synthase, F0 complex, subunit C, bacterial/chloroplast|F/V-ATP synthase subunit C superfamily|F1F0 ATP synthase subunit C superfamily|V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015986|GO:0015991|GO:0033177|GO:0045263 G3DSA:1.20.20.10|MF_01396|PF00137|PR00124|PS00605|SSF81333|TIGR01260 Alide2_0380 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002146|IPR005864|IPR028987 ATP synthase, F0 complex, subunit b, bacterial|ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast|F-type ATP synthase subunit B-like, membrane domain superfamily GO:0015078|GO:0015986|GO:0045263 G3DSA:1.20.5.620|MF_01398|PF00430|SSF81573|TIGR01144 Alide2_0381 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000711|IPR026015 ATPase, OSCP/delta subunit|F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily GO:0015986|GO:0046933 G3DSA:1.10.520.20|MF_01416|PF00213|PR00125|SSF47928|TIGR01145 Alide2_0382 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000194|IPR000793|IPR004100|IPR005294|IPR020003|IPR023366|IPR027417|IPR036121|IPR038376 ATP synthase subunit alpha, N-terminal domain-like superfamily|ATP synthase, F1 complex, alpha subunit|ATP synthase, alpha subunit, C-terminal|ATP synthase, alpha subunit, C-terminal domain superfamily|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015986|GO:0045261|GO:0046034|GO:0046933|GO:1902600 G3DSA:1.20.150.20|G3DSA:2.40.30.20|G3DSA:3.40.50.300|MF_01346|PF00006|PF00306|PF02874|PS00152|SSF47917|SSF50615|SSF52540|TIGR00962 Alide2_0383 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000131|IPR023632|IPR035968 ATP synthase, F1 complex, gamma subunit|ATP synthase, F1 complex, gamma subunit conserved site|ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 G3DSA:1.10.287.80|G3DSA:3.40.1380.10|MF_00815|PF00231|PR00126|PS00153|SSF52943|TIGR01146 Alide2_0384 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000194|IPR003593|IPR004100|IPR005722|IPR020003|IPR024034|IPR027417|IPR036121 AAA+ ATPase domain|ATP synthase, F1 complex, beta subunit|ATPase, F1/V1 complex, beta/alpha subunit, C-terminal|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015986|GO:0045261|GO:0046034|GO:0046933|GO:1902600 G3DSA:1.10.1140.10|G3DSA:2.40.10.170|G3DSA:3.40.50.300|MF_01347|PF00006|PF02874|PS00152|SM00382|SSF47917|SSF50615|SSF52540|TIGR01039 Alide2_0385 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001469|IPR020546|IPR036771|IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily|ATP synthase, F1 complex, delta/epsilon subunit|ATP synthase, F1 complex, delta/epsilon subunit, N-terminal|F0F1 ATP synthase delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933 G3DSA:1.20.5.440|G3DSA:2.60.15.10|MF_00530|PD000944|PF02823|SSF46604|SSF51344|TIGR01216 Alide2_0386 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR010921 Transposase IS3/IS911family|Trp repressor/replication initiator GO:0003677|GO:0004803|GO:0006313|GO:0043565 PF01527|SSF48295 Alide2_0387 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008878 Transposase IS66, Orf2 PF05717 Alide2_0388 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004291|IPR024463|IPR024474|IPR039552 Transposase IS66, C-terminal|Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66 PF03050|PF13005|PF13007|PF13817 Alide2_0392 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007621 TPM domain G3DSA:3.10.310.50|PF04536 Alide2_0393 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007621 TPM domain G3DSA:3.10.310.50|PF04536 Alide2_0394 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007156|IPR023353 LemA|LemA-like domain superfamily G3DSA:1.20.1440.20|PF04011|SSF140478 Alide2_0395 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032710|IPR037401 NTF2-like domain superfamily|SnoaL-like domain G3DSA:3.10.450.50|PF13474|SSF54427 Alide2_0396 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021332 Protein of unknown function DUF2944 PF11161 Alide2_0397 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002323|IPR009056|IPR036909 Cytochrome c, class IE|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|PR00607|SSF46626 Alide2_0398 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_0399 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR004764|IPR027463 Acriflavin resistance protein|Hydrophobe/amphiphile efflux-1 HAE1|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006855|GO:0015562|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00915 Alide2_0400 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF00529|PF16576|SSF111369|TIGR01730 Alide2_0401 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR013572|IPR023772|IPR036271 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Transcription regulator MAATS, C-terminal GO:0003677 G3DSA:1.10.357.10|PF00440|PF08361|PR00455|PS01081|SSF46689|SSF48498 Alide2_0402 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu-like, domain 2|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation protein, beta-barrel domain superfamily GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414 G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485 Alide2_0403 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001901|IPR005807|IPR038379 Protein translocase complex, SecE/Sec61-gamma subunit|SecE subunit of protein translocation complex, bacterial-like|SecE superfamily GO:0006605|GO:0006886|GO:0009306|GO:0015450|GO:0016020|GO:0016021 G3DSA:1.20.5.1030|MF_00422|PF00584|PR01650|TIGR00964 Alide2_0404 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001062|IPR005824|IPR006645|IPR008991|IPR014722|IPR015869|IPR036735 KOW|NusG, N-terminal|NusG, N-terminal domain superfamily|Ribosomal protein L2, domain 2|Transcription antitermination protein, NusG|Transcription antitermination protein, NusG, bacteria, conserved site|Translation protein SH3-like domain superfamily GO:0006355|GO:0032784 G3DSA:2.30.30.30|G3DSA:3.30.70.940|MF_00948|PF00467|PF02357|PR00338|PS01014|SM00738|SM00739|SSF50104|SSF82679|TIGR00922 Alide2_0405 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000911|IPR006519|IPR020783|IPR020784|IPR020785|IPR036769|IPR036796 Ribosomal protein L11, C-terminal|Ribosomal protein L11, C-terminal domain superfamily|Ribosomal protein L11, N-terminal|Ribosomal protein L11, bacterial-type|Ribosomal protein L11, conserved site|Ribosomal protein L11/L12|Ribosomal protein L11/L12, N-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 G3DSA:1.10.10.250|G3DSA:3.30.1550.10|MF_00736|PD001367|PF00298|PF03946|PS00359|SM00649|SSF46906|SSF54747|TIGR01632 Alide2_0406 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002143|IPR005878|IPR016095|IPR023673|IPR023674|IPR028364 Ribosomal protein L1|Ribosomal protein L1, 3-layer alpha/beta-sandwich|Ribosomal protein L1, bacterial-type|Ribosomal protein L1, conserved site|Ribosomal protein L1-like|Ribosomal protein L1/ribosomal biogenesis protein GO:0003723|GO:0003735|GO:0006412|GO:0015934 G3DSA:3.30.190.20|G3DSA:3.40.50.790|MF_01318_B|PF00687|PIRSF002155|PS01199|SSF56808|TIGR01169 Alide2_0407 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001790|IPR002363|IPR022973 Ribosomal protein L10|Ribosomal protein L10, eubacterial, conserved site|Ribosomal protein L10P GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0042254 G3DSA:3.30.70.1730|MF_00362|PF00466|PS01109|SSF160369 Alide2_0408 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000206|IPR008932|IPR013823|IPR014719|IPR036235 Ribosomal protein L7/L12|Ribosomal protein L7/L12, C-terminal|Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like|Ribosomal protein L7/L12, oligomerisation|Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.5.710|G3DSA:3.30.1390.10|MF_00368|PD001326|PF00542|PF16320|SSF48300|SSF54736|TIGR00855 Alide2_0409 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007120|IPR007121|IPR007641|IPR007642|IPR007644|IPR007645|IPR010243|IPR014724|IPR019462|IPR037033|IPR037034 DNA-directed RNA polymerase beta subunit, bacterial-type|DNA-directed RNA polymerase, beta subunit, external 1 domain|DNA-directed RNA polymerase, subunit 2, hybrid-binding domain|DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily|RNA polymerase Rpb2, OB-fold|RNA polymerase Rpb2, domain 2|RNA polymerase Rpb2, domain 2 superfamily|RNA polymerase Rpb2, domain 3|RNA polymerase Rpb2, domain 7|RNA polymerase, beta subunit, conserved site|RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 G3DSA:2.40.270.10|G3DSA:2.40.50.100|G3DSA:2.40.50.150|G3DSA:3.90.1100.10|G3DSA:3.90.1110.10|G3DSA:3.90.1800.10|MF_01321|PF00562|PF04560|PF04561|PF04563|PF04565|PF10385|PS01166|SSF64484|TIGR02013 Alide2_0410 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000722|IPR006592|IPR007066|IPR007080|IPR007081|IPR007083|IPR012754|IPR038120 DNA-directed RNA polymerase, subunit beta-prime|RNA polymerase Rpb1, domain 1|RNA polymerase Rpb1, domain 3|RNA polymerase Rpb1, domain 4|RNA polymerase Rpb1, domain 5|RNA polymerase Rpb1, funnel domain superfamily|RNA polymerase, N-terminal|RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 G3DSA:1.10.132.30|G3DSA:1.10.150.390|G3DSA:1.10.1790.20|G3DSA:1.10.274.100|G3DSA:1.10.40.90|G3DSA:2.40.50.100|MF_01322|PF00623|PF04983|PF04997|PF04998|PF05000|SM00663|SSF64484|TIGR02386 Alide2_0411 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007156|IPR023353 LemA|LemA-like domain superfamily G3DSA:1.20.1440.20|PF04011|SSF140478 Alide2_0412 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001678|IPR006027|IPR018314|IPR023267|IPR029063|IPR035926 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site|NusB-like superfamily|NusB/RsmB/TIM44|RNA (C5-cytosine) methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase|SAM-dependent methyltransferase RsmB/NOP2-type GO:0003723|GO:0006355|GO:0008168 G3DSA:1.10.940.10|G3DSA:3.30.70.1170|G3DSA:3.40.50.150|PF01029|PF01189|PR02008|PS01153|SSF48013|SSF53335 Alide2_0413 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025500 Protein of unknown function DUF4390 PF14334 Alide2_0414 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR003594|IPR003660|IPR003661|IPR004358|IPR013656|IPR017232|IPR035965|IPR036097|IPR036890 HAMP domain|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain|PAS domain superfamily|PAS fold-4|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, nitrogen fixation and metabolism regulator|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.1480.50|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PF08448|PIRSF037532|PR00344|SM00091|SM00304|SM00387|SM00388|SSF158472|SSF47384|SSF55785|SSF55874 Alide2_0415 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR002197|IPR009057|IPR011006 CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0043565 G3DSA:1.10.10.60|G3DSA:3.40.50.2300|PF00072|PF02954|SM00448|SSF46689|SSF52172 Alide2_0416 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008767|IPR038666 Bacteriophage SPP1, head-tail adaptor|Bacteriophage SPP1, head-tail adaptor superfamily G3DSA:2.40.10.270|PF05521|TIGR01563 Alide2_0417 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF13276|PF13683|SSF53098 Alide2_0418 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527|SSF46689 Alide2_0419 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006450|IPR021146 Phage gp6-like head-tail connector protein|Phage protein of unkonwn function G3DSA:1.10.3230.30|PF05135|TIGR01560 Alide2_0425 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024455 Phage capsid PF05065|SSF56563|TIGR01554 Alide2_0426 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061|IPR036388 MerR-type HTH domain|Putative DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF13411|SSF46955 Alide2_0428 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13481|SSF52540 Alide2_0429 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002694|IPR036977 DNA Primase, CHC2-type zinc finger|Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 G3DSA:3.90.580.10|PF01807|SM00400|SSF57783 Alide2_0430 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010260 DNA-binding transcriptional activator AlpA PF05930 Alide2_0433 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 Alide2_0437 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR038717 Homeobox-like domain superfamily|Tc1-like transposase, DDE domain GO:0003677 PF13358|PF13565|SSF46689 Alide2_0439 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|PR01713|SSF51735 Alide2_0440 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR038731 Glycosyltransferase RgtA/B/C/D-like PF13231 Alide2_0441 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 Alide2_0442 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD PF03706 Alide2_0443 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000878|IPR008189|IPR014776|IPR014777|IPR018063|IPR035996 SAM-dependent methyltransferase RsmI, conserved site|Tetrapyrrole methylase|Tetrapyrrole methylase superfamily|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|rRNA small subunit methyltransferase I GO:0008168 G3DSA:3.30.950.10|G3DSA:3.40.1010.10|MF_01877|PF00590|PIRSF005917|PS01296|SSF53790|TIGR00096 Alide2_0444 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003509|IPR011335|IPR011856 Restriction endonuclease type II-like|Uncharacterised protein family UPF0102|tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 G3DSA:3.40.1350.10|MF_00048|PF02021|SSF52980|TIGR00252 Alide2_0445 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 G3DSA:3.40.50.10490|PF13580|SSF53697 Alide2_0446 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 Alide2_0447 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002204|IPR006115|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|3-hydroxyisobutyrate dehydrogenase-related, conserved site|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PS00895|SSF48179|SSF51735 Alide2_0448 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001482|IPR006321|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Pilus retraction protein PilT|Type II/IV secretion system protein GO:0005524 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00662|SSF52540|TIGR01420 Alide2_0449 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000595|IPR014710|IPR018490 Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF00027|SM00100|SSF51206 Alide2_0450 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001482|IPR006321|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Pilus retraction protein PilT|Type II/IV secretion system protein GO:0005524 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00662|SSF52540|TIGR01420 Alide2_0451 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001608|IPR011078|IPR029066 Alanine racemase, N-terminal|PLP-binding barrel|Pyridoxal phosphate homeostasis protein GO:0030170 G3DSA:3.20.20.10|MF_02087|PF01168|PIRSF004848|SSF51419|TIGR00044 Alide2_0452 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000192|IPR015421|IPR015422|IPR015424|IPR024169 Aminotransferase class V domain|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase GO:0003824 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|PIRSF000524|SSF53383 Alide2_0453 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.260.40 Alide2_0454 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007383 Protein of unknown function DUF445 PF04286 Alide2_0455 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004113|IPR006094|IPR016164|IPR016171|IPR036318 FAD linked oxidase, N-terminal|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2 GO:0003824|GO:0016491|GO:0050660|GO:0055114 G3DSA:1.10.45.10|G3DSA:3.30.465.40|G3DSA:3.30.70.2740|PF01565|PF02913|SSF55103|SSF56176 Alide2_0456 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_0457 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002376|IPR004810|IPR036477 Formyl transferase, N-terminal|Formyl transferase, N-terminal domain superfamily|Formyltetrahydrofolate deformylase GO:0006189|GO:0008864|GO:0009058|GO:0016742 G3DSA:3.30.70.260|G3DSA:3.40.50.170|MF_01927|PF00551|PIRSF036480|PR01575|SSF53328|SSF55021|TIGR00655 Alide2_0458 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR001610|IPR001633|IPR013655|IPR013656|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS domain superfamily|PAS fold-3|PAS fold-4 GO:0005515 G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF08447|PF08448|PF13426|SM00052|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254 Alide2_0459 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007314 Haem-binding uptake, Tiki superfamily, ChaN G3DSA:1.10.8.760|G3DSA:3.40.50.11550|PF04187|SSF159501 Alide2_0460 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000788|IPR013344 Ribonucleotide reductase large subunit, C-terminal|Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0006260|GO:0031419|GO:0055114 G3DSA:3.20.70.20|PF02867|PR01183|SSF51998|TIGR02504 Alide2_0461 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003018|IPR003594|IPR003660|IPR011712|IPR016380|IPR029016|IPR029095|IPR036890 GAF domain|GAF-like domain superfamily|HAMP domain|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|NarX-like, N-terminal|Signal transduction histidine kinase, nitrate/nitrite-sensing|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0004673|GO:0005515|GO:0007165|GO:0016021|GO:0046983 G3DSA:1.20.1480.50|G3DSA:3.30.450.40|G3DSA:3.30.565.10|PF00672|PF01590|PF02518|PF07730|PF13675|PIRSF003167|SM00304|SM00387|SSF158472|SSF55781|SSF55874 Alide2_0462 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal GO:0000160|GO:0003677|GO:0006355 G3DSA:3.40.50.12740|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 Alide2_0463 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_0464 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004737|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473|TIGR00886 Alide2_0465 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006468|IPR006655|IPR006656|IPR006657|IPR006963|IPR009010|IPR028189 Aspartate decarboxylase-like domain superfamily|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, prokaryotic, conserved site|Nitrate reductase, alpha subunit|Nitrate reductase, alpha subunit, N-terminal GO:0008940|GO:0009055|GO:0009325|GO:0016491|GO:0042126|GO:0043546|GO:0055114 G3DSA:3.40.50.12440|G3DSA:4.10.1200.10|PF00384|PF01568|PF14710|PS00490|PS00932|SM00926|SSF50692|SSF53706|TIGR01580 Alide2_0466 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006547|IPR017896|IPR029263|IPR038262 4Fe-4S ferredoxin-type, iron-sulphur binding domain|Nitrate reductase beta, C-terminal domain superfamily|Nitrate reductase, beta subunit|Respiratory nitrate reductase beta, C-terminal GO:0008940|GO:0009325|GO:0042126|GO:0055114 G3DSA:1.10.3650.10|G3DSA:3.30.70.20|PF13247|PF14711|SSF54862|TIGR01660 Alide2_0467 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003765|IPR020945|IPR036411 DMSO/Nitrate reductase chaperone|Nitrate reductase chaperone, NarJ|TorD-like superfamily GO:0051082|GO:0051131 G3DSA:1.10.3480.10|PF02613|SSF89155|TIGR00684 Alide2_0468 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003816|IPR023234|IPR036197 NarG-like domain|NarG-like superfamily|Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 G3DSA:1.20.950.20|PF02665|SSF103501|TIGR00351 Alide2_0469 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000297|IPR023058|IPR027304 Peptidyl-prolyl cis-trans isomerase, PpiC-type|Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site|Trigger factor/SurA domain superfamily GO:0003755 G3DSA:1.10.4030.30|G3DSA:3.10.50.40|PF00639|PS01096|SSF109998|SSF54534 Alide2_0470 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001765|IPR015892|IPR036874 Carbonic anhydrase|Carbonic anhydrase superfamily|Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 G3DSA:3.40.1050.10|PF00484|PS00704|PS00705|SM00947|SSF53056 Alide2_0471 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000415|IPR026021|IPR029479 Nitroreductase|Nitroreductase-like|Putative NAD(P)H nitroreductase YdjA-like GO:0016491 G3DSA:3.40.109.10|PF00881|PIRSF000232|SSF55469 Alide2_0473 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012312 Haemerythrin-like G3DSA:1.20.120.520|PF01814 Alide2_0474 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021951 Protein of unknown function DUF3567 PF12091 Alide2_0475 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021457 Protein of unknown function DUF3108 PF11306 Alide2_0476 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 Alide2_0477 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990|IPR019734|IPR029489 O-GlcNAc transferase, C-terminal|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|G3DSA:3.40.50.11380|G3DSA:3.40.50.2000|PF13414|PF13432|PF13844|SM00028|SSF48452|SSF53756 Alide2_0478 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006655|IPR006656|IPR006657|IPR006963|IPR009010 Aspartate decarboxylase-like domain superfamily|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0043546|GO:0055114 G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.30.2070.10|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04879|PS00490|SM00926|SSF50692|SSF53706 Alide2_0479 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0480 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR011206|IPR015813 Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|PIRSF015582|SSF51621 Alide2_0481 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0482 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 Alide2_0483 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|SSF47203|SSF56645 Alide2_0484 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 Alide2_0485 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|G3DSA:3.30.1330.120|PF03972|SSF103378 Alide2_0486 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR011206|IPR015813 Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|PIRSF015582|SSF51621 Alide2_0487 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SSF46785|SSF55781 Alide2_0488 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR011650|IPR017439|IPR036264 Amidohydrolase|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|SSF53187|SSF55031|TIGR01891 Alide2_0489 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000582|IPR014352|IPR035984 Acyl-CoA binding protein superfamily|Acyl-CoA-binding protein, ACBP|FERM/acyl-CoA-binding protein superfamily GO:0000062 G3DSA:1.20.80.10|PF00887|PR00689|SSF47027 Alide2_0490 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014553 Predicted aminopeptidase PF10023|PIRSF029285 Alide2_0491 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005019|IPR011257 DNA glycosylase|Methyladenine glycosylase GO:0003824|GO:0006281|GO:0006284|GO:0008725 G3DSA:1.10.340.30|PF03352|SSF48150 Alide2_0493 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003333|IPR029063 Mycolic acid cyclopropane synthase|S-adenosyl-L-methionine-dependent methyltransferase GO:0008610 G3DSA:3.40.50.150|PF02353|PIRSF003085|SSF53335 Alide2_0494 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014991 Protein of unknown function DUF1840 PF08895 Alide2_0495 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0496 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0497 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873 AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|SSF56801 Alide2_0498 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 Alide2_0499 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_0500 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_0501 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_0502 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_0503 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845 AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.40.50.12780|PF00501|PS00455|SSF56801 Alide2_0504 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR027417|IPR036365|IPR036366 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|PGBD superfamily|PGBD-like superfamily G3DSA:1.10.101.10|G3DSA:3.40.50.300|G3DSA:3.90.70.10|PF13401|SM00382|SSF47090|SSF52540 Alide2_0505 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032389 Type II secretion system protein B PF16537|PR01217 Alide2_0506 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SM00419|SSF46785|SSF51206 Alide2_0507 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002942|IPR006145|IPR020103|IPR036986 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|SM00363|SSF55120|SSF55174 Alide2_0508 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001404|IPR003594|IPR019805|IPR020568|IPR020575|IPR036890|IPR037196 HSP90, C-terminal domain|Heat shock protein Hsp90 family|Heat shock protein Hsp90, N-terminal|Heat shock protein Hsp90, conserved site|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Ribosomal protein S5 domain 2-type fold GO:0005524|GO:0006457|GO:0051082 G3DSA:1.20.120.790|G3DSA:3.30.230.80|G3DSA:3.30.565.10|G3DSA:3.40.50.11260|MF_00505|PF00183|PF02518|PIRSF002583|PR00775|PS00298|SM00387|SSF110942|SSF54211|SSF55874 Alide2_0510 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0511 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002575|IPR011009|IPR032882 Aminoglycoside phosphotransferase|Protein kinase-like domain superfamily|SrkA/RdoA protein kinase GO:0004674|GO:0006468 G3DSA:1.10.510.10|G3DSA:1.20.1270.170|G3DSA:3.30.200.70|MF_01497|PF01636|SSF56112 Alide2_0512 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000719|IPR006016|IPR008271|IPR011009|IPR014729 Protein kinase domain|Protein kinase-like domain superfamily|Rossmann-like alpha/beta/alpha sandwich fold|Serine/threonine-protein kinase, active site|UspA GO:0004672|GO:0005524|GO:0006468 G3DSA:1.10.510.10|G3DSA:3.30.200.20|G3DSA:3.40.50.620|PF00069|PF00582|PIRSF000654|PS00108|SM00220|SSF52402|SSF56112 Alide2_0513 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011152|IPR024654|IPR029052 Calcineurin-like phosphoesterase domain, lpxH type|Metallo-dependent phosphatase-like|Phosphoesterase MJ0912 G3DSA:3.60.21.10|PF12850|PIRSF000883|SSF56300 Alide2_0514 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0515 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029069 HotDog domain superfamily G3DSA:3.10.129.10|SSF54637 Alide2_0517 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR015813 HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|SSF51621 Alide2_0518 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011234|IPR012690|IPR036663 2-oxo-hepta-4-ene-1,7-dioic acid hydratase|Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824|GO:0018817|GO:0019439 G3DSA:3.90.850.10|PF01557|SSF56529|TIGR02312 Alide2_0519 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 Alide2_0520 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 Alide2_0521 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006175|IPR035959 RutC-like superfamily|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|SSF55298 Alide2_0522 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0523 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002563|IPR012349 FMN-binding split barrel|Flavin reductase like domain GO:0010181|GO:0048037 G3DSA:2.30.110.10|PF01613|SM00903|SSF50475 Alide2_0524 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_0525 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006108|IPR006176|IPR006180|IPR008927|IPR013328|IPR022694|IPR036291 3-hydroxyacyl-CoA dehydrogenase|3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|3-hydroxyacyl-CoA dehydrogenase, conserved site|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0003857|GO:0006631|GO:0016491|GO:0055114|GO:0070403 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF00725|PF02737|PIRSF000105|PS00067|SSF48179|SSF51735 Alide2_0526 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000172|IPR007867|IPR012132|IPR027424|IPR036188 FAD/NAD(P)-binding domain superfamily|Glucose Oxidase, domain 2|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 G3DSA:1.10.1220.110|G3DSA:3.30.410.40|G3DSA:3.50.50.60|G3DSA:4.10.450.10|PF00732|PF05199|PIRSF000137|PS00623|PS00624|SSF51905|SSF54373 Alide2_0529 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000412|IPR013525 ABC-2 transporter|ABC-2 type transporter GO:0016020|GO:0016021|GO:0043190|GO:0055085 PF01061|PIRSF006648|PR00164 Alide2_0530 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_0531 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011118|IPR029058 Alpha/Beta hydrolase fold|Tannase/feruloyl esterase PF07519|SSF53474 Alide2_0532 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000845|IPR011271|IPR018953|IPR035994|IPR037109 AMP nucleosidase|AMP nucleoside phosphorylase, N-terminal|AMP nucleoside phosphorylase, N-terminal domain superfamily|Nucleoside phosphorylase domain|Nucleoside phosphorylase superfamily GO:0003824|GO:0008714|GO:0009116|GO:0044209 G3DSA:3.30.1730.10|G3DSA:3.40.50.1580|MF_01932|PF01048|PF10423|SSF53167|TIGR01717 Alide2_0533 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR001633|IPR013656|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase|PAS domain|PAS domain superfamily|PAS fold-4 G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF08448|PF13426|SM00052|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254 Alide2_0534 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002524|IPR027469|IPR027470|IPR036837 Cation efflux protein|Cation efflux protein, cytoplasmic domain|Cation efflux protein, cytoplasmic domain superfamily|Cation efflux transmembrane domain superfamily GO:0006812|GO:0008324|GO:0016021|GO:0055085 G3DSA:1.20.1510.10|G3DSA:3.30.70.1350|PF01545|PF16916|SSF160240|SSF161111|TIGR01297 Alide2_0535 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003732|IPR023509 D-aminoacyl-tRNA deacylase DTD|D-aminoacyl-tRNA deacylase-like superfamily GO:0002161|GO:0005737|GO:0051499 G3DSA:3.50.80.10|MF_00518|PF02580|SSF69500|TIGR00256 Alide2_0536 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 Alide2_0537 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0538 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0539 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_0540 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011032|IPR013149|IPR014188|IPR020843|IPR036291 Acrylyl-CoA reductase AcuI|Alcohol dehydrogenase, C-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|SM00829|SSF50129|SSF51735|TIGR02823 Alide2_0541 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_0542 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002036|IPR020549|IPR023091 Endoribonuclease YbeY|Endoribonuclease YbeY, conserved site|Metalloprotease catalytic domain superfamily, predicted GO:0004222|GO:0006364 G3DSA:3.40.390.30|MF_00009|PF02130|PS01306|SSF55486|TIGR00043 Alide2_0543 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003714|IPR027417 P-loop containing nucleoside triphosphate hydrolase|PhoH-like protein GO:0005524 G3DSA:3.40.50.300|PF02562|SSF52540 Alide2_0544 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000085|IPR003583|IPR010994|IPR011114|IPR012340|IPR013849|IPR036267 Bacterial DNA recombination protein RuvA|DNA helicase, Holliday junction RuvA type, domain I, bacterial|Helix-hairpin-helix DNA-binding motif, class 1|Holliday junction DNA helicase RuvA, C-terminal|Nucleic acid-binding, OB-fold|RuvA domain 2-like|RuvA, C-terminal domain superfamily GO:0003677|GO:0003678|GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 G3DSA:1.10.150.20|G3DSA:1.10.8.10|G3DSA:2.40.50.140|MF_00031|PF01330|PF07499|PF14520|SM00278|SSF46929|SSF47781|SSF50249|TIGR00084 Alide2_0545 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009003 Peptidase S1, PA clan G3DSA:2.40.10.10|SSF50494 Alide2_0546 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013126|IPR018181|IPR021030 Heat shock protein 70 family|Heat shock protein 70, conserved site|Protein of unknown function DUF3731 G3DSA:3.30.420.40|G3DSA:3.90.640.10|PF00012|PF12531|PR00301|PS00329|SSF53067 Alide2_0547 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013126|IPR018181 Heat shock protein 70 family|Heat shock protein 70, conserved site G3DSA:3.30.420.40|G3DSA:3.90.640.10|PF00012|PR00301|PS00297|PS00329|SSF53067 Alide2_0548 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021212 Domain of unknown function DUF2760 PF10816 Alide2_0549 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR004605|IPR008823|IPR008824|IPR027417|IPR036388|IPR036390 AAA+ ATPase domain|DNA helicase, Holliday junction RuvB type|DNA helicase, Holliday junction RuvB type, C-terminal|Holliday junction DNA helicase ruvB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 G3DSA:1.10.10.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_00016|PD005323|PF05491|PF05496|SM00382|SSF46785|SSF52540|TIGR00635 Alide2_0550 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 G3DSA:3.30.70.260|PF02308|PR01837 Alide2_0553 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001608|IPR026956|IPR029066 Alanine racemase, N-terminal|D-serine dehydratase-like domain|PLP-binding barrel G3DSA:2.40.37.20|G3DSA:3.20.20.10|PF01168|PF14031|SM01119|SSF51419 Alide2_0554 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013078|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1 G3DSA:3.40.50.1240|PF00300|PIRSF000709|SM00855|SSF53254 Alide2_0555 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025411 Domain of unknown function DUF4136 G3DSA:3.30.160.670|PF13590 Alide2_0556 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011063|IPR012089|IPR014729|IPR035107 Rossmann-like alpha/beta/alpha sandwich fold|tRNA thiolation protein, TtcA/Ctu1 type|tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal|tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 G3DSA:3.40.50.620|MF_01850|PF01171|PIRSF004976|SSF52402 Alide2_0557 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 G3DSA:3.30.1130.10|PF02152|SM00905|SSF55620|TIGR00526 Alide2_0558 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 G3DSA:3.30.1130.10|PF02152|SM00905|SSF55620 Alide2_0559 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SSF51735 Alide2_0560 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003788|IPR029063|IPR038375 Protein arginine methyltransferase NDUFAF7|Protein arginine methyltransferase NDUFAF7 superfamily|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.12710|PF02636|SSF53335 Alide2_0561 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 Alide2_0562 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021320 Protein of unknown function DUF2905 PF11146 Alide2_0563 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000600 ROK family G3DSA:3.30.420.40|PF00480|SSF53067 Alide2_0564 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 G3DSA:3.40.50.2000|PF00982|SSF53756 Alide2_0565 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008928|IPR011613|IPR012341 GH15-like domain|Six-hairpin glycosidase superfamily|Six-hairpin glycosidase-like superfamily GO:0003824 G3DSA:1.50.10.10|PF00723|SSF48208 Alide2_0566 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003337|IPR006379|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase, subfamily IIB|Trehalose-phosphatase GO:0003824|GO:0005992 G3DSA:3.30.70.1020|G3DSA:3.40.50.1000|PF02358|SSF56784|TIGR00685|TIGR01484 Alide2_0567 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005746|IPR013766|IPR017937|IPR036249 Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0006662|GO:0015035|GO:0045454 G3DSA:2.20.28.140|G3DSA:3.40.30.10|PF00085|PIRSF000077|PR00421|PS00194|SSF52833|TIGR01068 Alide2_0568 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002646|IPR006674|IPR012006|IPR032828 HD domain|Poly A polymerase, head domain|tRNA nucleotidyltransferase, proteobacteria|tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain GO:0001680|GO:0003723|GO:0004810|GO:0005524|GO:0006396|GO:0016779 G3DSA:1.10.3090.10|G3DSA:3.30.460.10|MF_01261|PF01743|PF01966|PF12627|PIRSF000813|SSF81301|SSF81891 Alide2_0569 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002078|IPR002197|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00158|PF02954|PR01590|PS00675|PS00676|PS00688|SM00382|SSF46689|SSF52540 Alide2_0570 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010839 Acyclic terpene utilisation PF07287 Alide2_0571 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025496 Protein of unknown function DUF4387 PF14330 Alide2_0572 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0573 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 PF00149|SSF56300 Alide2_0574 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|SSF47616|SSF52833 Alide2_0575 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002698|IPR024185|IPR037171 5-formyltetrahydrofolate cyclo-ligase|5-formyltetrahydrofolate cyclo-ligase-like domain superfamily|NagB/RpiA transferase-like G3DSA:3.40.50.10420|PF01812|PIRSF006806|SSF100950|TIGR02727 Alide2_0576 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008258|IPR008939|IPR023346 Lysozyme-like domain superfamily|Lytic transglycosylase, superhelical U-shaped|Transglycosylase SLT domain 1 GO:0004553|GO:0042597 G3DSA:1.10.530.10|G3DSA:1.25.20.10|PF01464|SSF48435|SSF53955 Alide2_0577 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 G3DSA:1.20.950.20|PF01292|SSF81342 Alide2_0578 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025711 PepSY domain PF13670 Alide2_0579 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005123|IPR006620|IPR023550 Oxoglutarate/iron-dependent dioxygenase|PKHD-type hydroxylase|Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016491|GO:0016705|GO:0016706|GO:0031418|GO:0055114 G3DSA:2.60.120.620|G3DSA:4.10.860.20|MF_00657|PF13640|SM00702|SSF51197 Alide2_0580 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000262|IPR012133|IPR013785 Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent dehydrogenase GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF01070|PIRSF000138|SSF51395 Alide2_0581 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 Alide2_0582 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 Alide2_0583 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_0584 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 Alide2_0585 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014030|IPR014031|IPR016039|IPR018201|IPR020841 Beta-ketoacyl synthase, C-terminal|Beta-ketoacyl synthase, N-terminal|Beta-ketoacyl synthase, active site|Polyketide synthase, beta-ketoacyl synthase domain|Thiolase-like GO:0003824 G3DSA:3.40.47.10|PF00109|PF02801|PS00606|SM00825|SSF53901 Alide2_0586 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010083|IPR013114|IPR029069 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA|Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ|HotDog domain superfamily GO:0005737|GO:0006633|GO:0008693 G3DSA:3.10.129.10|PF07977|SSF54637|TIGR01749 Alide2_0587 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003010|IPR004563|IPR036526 Apolipoprotein N-acyltransferase|Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily GO:0006807|GO:0016021|GO:0016410|GO:0042158 G3DSA:3.60.110.10|MF_01148|PF00795|SSF56317|TIGR00546 Alide2_0588 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644|IPR005170|IPR016169|IPR036318 CBS domain|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Transporter-associated domain GO:0050660 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF03471|SM01091|SSF54631|SSF56176 Alide2_0589 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 Alide2_0590 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000485|IPR011008|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13404|PR00033|SM00344|SSF46785|SSF54909 Alide2_0591 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004360|IPR005956|IPR029068 4-hydroxyphenylpyruvate dioxygenase|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain GO:0003868|GO:0009072|GO:0016701|GO:0055114 G3DSA:3.10.180.10|PF00903|PF14696|PIRSF009283|SSF54593|TIGR01263 Alide2_0592 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005960|IPR018301|IPR019774|IPR036329|IPR036951 Aromatic amino acid hydroxylase superfamily|Aromatic amino acid hydroxylase, C-terminal|Aromatic amino acid hydroxylase, iron/copper binding site|Aromatic amino acid monoxygenase, C-terminal domain superfamily|Phenylalanine-4-hydroxylase, monomeric form GO:0004497|GO:0004505|GO:0005506|GO:0006559|GO:0009072|GO:0016714|GO:0055114 G3DSA:1.10.800.10|PF00351|PR00372|PS00367|SSF56534|TIGR01267 Alide2_0593 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001017|IPR022593|IPR029061 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain|Dehydrogenase, E1 component|Thiamin diphosphate-binding fold GO:0016624 G3DSA:3.40.50.970|PF00676|PF12573|SSF52518 Alide2_0594 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005475|IPR009014|IPR029061|IPR033248 Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, C-terminal domain|Transketolase-like, pyrimidine-binding domain GO:0003824 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF02779|PF02780|SM00861|SSF52518|SSF52922 Alide2_0595 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR001078|IPR003016|IPR004167|IPR011053|IPR023213|IPR036625 2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain superfamily|E3-binding domain superfamily|Peripheral subunit-binding domain|Single hybrid motif GO:0016746 G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|SSF47005|SSF51230|SSF52777 Alide2_0596 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001100|IPR004099|IPR006258|IPR012999|IPR016156|IPR023753|IPR036188 Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0004148|GO:0009055|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|SSF51905|SSF55424|TIGR01350 Alide2_0597 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 G3DSA:1.20.58.180|G3DSA:3.30.930.10|MF_00254|PF02091|PR01044|SSF55681|TIGR00388 Alide2_0598 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008909|IPR015944 DALR anticodon binding|Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004814|GO:0004820|GO:0005524|GO:0005737|GO:0006420|GO:0006426 MF_00255|PF02092|PF05746|PR01045|SSF109604|TIGR00211 Alide2_0599 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004446|IPR006543|IPR006549|IPR013954|IPR023214|IPR036412 D,D-heptose 1,7-bisphosphate phosphatase|HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase,subfamily IIIA|Histidinol-phosphate phosphatase|Polynucleotide kinase 3 phosphatase GO:0005975|GO:0016791 G3DSA:3.40.50.1000|PF08645|PIRSF004682|SSF56784|TIGR01656|TIGR01662 Alide2_0600 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 PF01553|SM00563|SSF69593 Alide2_0601 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002725 Protein of unknown function DUF45 G3DSA:3.30.2010.10|PF01863 Alide2_0602 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 Alide2_0603 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007055|IPR018392|IPR036779 BON domain|LysM domain|LysM domain superfamily G3DSA:3.10.350.10|PF01476|PF04972|SM00257|SSF54106 Alide2_0604 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004619 Type III pantothenate kinase GO:0004594 G3DSA:3.30.420.40|G3DSA:3.30.420.490|MF_01274|PF03309|SSF53067|TIGR00671 Alide2_0605 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR025722 Bacterial transcriptional repressor TetR|DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PF13972|PR00455|SSF46689 Alide2_0606 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008769 Poly granule associated PF05597|TIGR01837 Alide2_0607 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005888|IPR016040|IPR036291 NAD(P)-binding domain|NAD(P)-binding domain superfamily|dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|SSF51735|TIGR01181 Alide2_0608 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005913|IPR029903|IPR036291 NAD(P)-binding domain superfamily|RmlD-like substrate binding domain|dTDP-4-dehydrorhamnose reductase family G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF04321|SSF51735|TIGR01214 Alide2_0609 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005835|IPR005907|IPR029044 Glucose-1-phosphate thymidylyltransferase, short form|Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain GO:0008879|GO:0009058|GO:0016779|GO:0045226 G3DSA:3.90.550.10|PF00483|SSF53448|TIGR01207 Alide2_0610 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000888|IPR011051|IPR014710 RmlC-like cupin domain superfamily|RmlC-like jelly roll fold|dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 G3DSA:2.60.120.10|PD001462|PF00908|SSF51182|TIGR01221 Alide2_0611 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001296|IPR015393 Domain of unknown function DUF1972|Glycosyl transferase, family 1 G3DSA:3.40.50.2000|PF00534|PF09314|SSF53756 Alide2_0612 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006446|IPR029044 Nucleotide-diphospho-sugar transferases|Rhamnosyltransferase G3DSA:3.90.550.10|PF13641|SSF53448|TIGR01556 Alide2_0613 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001482|IPR007831|IPR027417|IPR037257 General secretory system II, protein E, N-terminal|General secretory system II, protein E, N-terminal superfamily|P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein G3DSA:3.30.300.160|G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PF05157|PS00662|SSF160246|SSF52540 Alide2_0614 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003004|IPR018076 GspF/PilC family|Type II secretion system F domain G3DSA:1.20.81.30|PF00482|PR00812 Alide2_0615 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000983|IPR010054|IPR012902|IPR013545 Bacterial general secretion pathway protein G-type pilin|General secretion pathway protein G|Prokaryotic N-terminal methylation site|Type II secretion system protein G GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.700.10|PF07963|PF08334|PR00813|PS00409|SSF54523|TIGR01710|TIGR02532 Alide2_0616 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002416|IPR012902 Prokaryotic N-terminal methylation site|Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.700.10|PF07963|PS00409|SSF54523|TIGR01708|TIGR02532 Alide2_0617 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012902 Prokaryotic N-terminal methylation site PF07963|PS00409|TIGR02532 Alide2_0618 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012902 Prokaryotic N-terminal methylation site PF07963|PS00409|TIGR02532 Alide2_0619 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005628|IPR038072 General secretion pathway protein K|GspK, central domain superfamily GO:0009306|GO:0016021 G3DSA:1.10.40.60|PF03934|SSF158544 Alide2_0620 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007813 Fimbrial assembly PilN PF05137 Alide2_0621 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR034756 Type II secretion system (T2SS), protein M subtype b PF10741 Alide2_0624 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR038717 Homeobox-like domain superfamily|Tc1-like transposase, DDE domain GO:0003677 PF13358|PF13565|SSF46689 Alide2_0625 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.40.50.11090|G3DSA:3.40.50.2000|PF13692|SSF53756 Alide2_0626 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013525 ABC-2 type transporter GO:0016020 PF01061 Alide2_0627 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR029439 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Wzt, C-terminal GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF14524|PS00211|SM00382|SSF52540 Alide2_0629 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020596|IPR029063 Ribosomal RNA adenine methylase transferase, conserved site|S-adenosyl-L-methionine-dependent methyltransferase GO:0000154|GO:0000179|GO:0008649 G3DSA:3.40.50.150|PF13489|PS01131|SSF53335 Alide2_0630 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000189|IPR008258|IPR023346|IPR025392 Domain of unknown function DUF4124|Lysozyme-like domain superfamily|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1 GO:0000270|GO:0008933|GO:0016020 G3DSA:1.10.530.10|PF01464|PF13511|PS00922|SSF53955 Alide2_0631 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 PF00953 Alide2_0632 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001048|IPR001057|IPR004662|IPR036393|IPR037528 Acetylglutamate kinase ArgB|Acetylglutamate kinase family|Acetylglutamate kinase-like superfamily|Aspartate/glutamate/uridylate kinase|Glutamate/acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 G3DSA:3.40.1160.10|MF_00082|PF00696|PIRSF000728|PR00474|SSF53633|TIGR00761 Alide2_0633 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 Alide2_0634 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|SSF46689|SSF48498 Alide2_0635 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878|IPR036250|IPR037069 Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|SSF47203|SSF56645 Alide2_0636 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019223 Domain of unknown function DUF2147 G3DSA:2.40.128.520|PF09917 Alide2_0637 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR006108|IPR006176|IPR008927|IPR013328|IPR029045|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase|NAD(P)-binding domain superfamily GO:0003824|GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|SSF48179|SSF51735|SSF52096 Alide2_0638 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930 Alide2_0639 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029069 HotDog domain superfamily G3DSA:3.10.129.90|PF13622|SSF54637 Alide2_0640 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_0641 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007607 Bactofilin A/B PF04519 Alide2_0642 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006683|IPR029069 HotDog domain superfamily|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 Alide2_0643 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 Alide2_0644 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 G3DSA:1.10.287.1080|PF12643|PIRSF029826|SSF101386 Alide2_0645 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|SSF53850|TIGR00787 Alide2_0646 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 Alide2_0647 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 Alide2_0648 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0649 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 Alide2_0650 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 Alide2_0651 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 Alide2_0652 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 Alide2_0653 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003462|IPR023401|IPR036291 NAD(P)-binding domain superfamily|Ornithine cyclodeaminase, N-terminal|Ornithine cyclodeaminase/mu-crystallin G3DSA:3.30.1780.10|G3DSA:3.40.50.720|PF02423|PIRSF001439|SSF51735 Alide2_0654 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006379|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase, subfamily IIB G3DSA:3.40.50.1000|PF08282|SSF56784|TIGR01484 Alide2_0655 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000795|IPR004161|IPR004548|IPR005225|IPR009000|IPR027417|IPR031157|IPR032090|IPR035647|IPR038467 EF-G domain III/V-like|P-loop containing nucleoside triphosphate hydrolase|Peptide chain release factor 3|Peptide chain release factor 3, C-terminal|Peptide chain release factor 3, C-terminal domain superfamily|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525|GO:0005737|GO:0006415 G3DSA:3.30.70.3280|G3DSA:3.40.50.300|MF_00072|PF00009|PF03144|PF16658|PR00315|PS00301|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR00503 Alide2_0656 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00081|PS00061|SSF51735 Alide2_0657 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000043|IPR015878|IPR020082|IPR034373|IPR036291 Adenosylhomocysteinase|Adenosylhomocysteinase-like|NAD(P)-binding domain superfamily|S-adenosyl-L-homocysteine hydrolase, NAD binding domain|S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0019510|GO:0051287 G3DSA:3.40.50.1480|G3DSA:3.40.50.720|MF_00563|PF00670|PF05221|PIRSF001109|PS00738|PS00739|SM00996|SM00997|SSF51735|SSF52283|TIGR00936 Alide2_0658 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002877|IPR029063|IPR036986 RNA-binding S4 domain superfamily|Ribosomal RNA methyltransferase FtsJ domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0003723|GO:0008168|GO:0032259 G3DSA:3.10.290.10|G3DSA:3.40.50.150|PF01728|SSF53335 Alide2_0659 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003171|IPR004620|IPR029041 5,10-methylenetetrahydrofolate reductase|FAD-linked oxidoreductase-like|Methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0006555|GO:0009086|GO:0055114 G3DSA:3.20.20.220|PF02219|SSF51730|TIGR00676 Alide2_0660 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009009|IPR012997|IPR034718|IPR036908 Endolytic peptidoglycan transglycosylase RlpA|Rare lipoprotein A|RlpA-like domain superfamily|RlpA-like protein, double-psi beta-barrel domain GO:0016829 G3DSA:2.40.40.10|MF_02071|PF03330|SSF50685|TIGR00413 Alide2_0661 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007473|IPR029063 Ribosomal RNA large subunit methyltransferase J|S-adenosyl-L-methionine-dependent methyltransferase GO:0008649|GO:0070475 G3DSA:3.40.50.150|MF_00934|PF04378|SSF53335 Alide2_0662 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000719|IPR011009|IPR017441 Protein kinase domain|Protein kinase, ATP binding site|Protein kinase-like domain superfamily GO:0004672|GO:0005524|GO:0006468 G3DSA:1.10.510.10|G3DSA:3.30.200.20|PF00069|PS00107|SSF56112 Alide2_0663 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005822|IPR005823|IPR036899 Ribosomal protein L13|Ribosomal protein L13 superfamily|Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 G3DSA:3.90.1180.10|MF_01366|PF00572|PIRSF002181|SSF52161|TIGR01066 Alide2_0664 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000754|IPR014721|IPR020568|IPR020574|IPR023035 Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S9|Ribosomal protein S9, bacterial/plastid|Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 G3DSA:3.30.230.10|MF_00532_B|PF00380|PS00360|SSF54211 Alide2_0665 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000361|IPR016092|IPR017870|IPR023063|IPR035903 FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion protein ErpA|FeS cluster insertion, C-terminal, conserved site|HesB-like domain superfamily GO:0005198|GO:0051536|GO:0097428 G3DSA:2.60.300.12|MF_01380|PF01521|PS01152|SSF89360|TIGR00049 Alide2_0666 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 G3DSA:3.30.420.40|MF_01270|PF03702|SSF53067 Alide2_0667 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011055|IPR016047 Duplicated hybrid motif|Peptidase M23 G3DSA:2.70.70.10|G3DSA:3.10.450.350|PF01551|SSF51261 Alide2_0668 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001412|IPR002305|IPR002307|IPR002942|IPR014729|IPR024108|IPR036986 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ic|RNA-binding S4 domain|RNA-binding S4 domain superfamily|Rossmann-like alpha/beta/alpha sandwich fold|Tyrosine-tRNA ligase|Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0000166|GO:0003723|GO:0004812|GO:0004831|GO:0005524|GO:0005737|GO:0006418|GO:0006437 G3DSA:1.10.240.10|G3DSA:3.10.290.10|G3DSA:3.40.50.620|MF_02007|PF00579|PF01479|PR01040|PS00178|SM00363|SSF52374|SSF55174|TIGR00234 Alide2_0669 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0670 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001451|IPR005882|IPR011004|IPR025877|IPR029044 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase|Hexapeptide repeat|MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases|Trimeric LpxA-like superfamily GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 G3DSA:2.160.10.10|G3DSA:3.90.550.10|MF_01631|PF00132|PF12804|SSF51161|SSF53448|TIGR01173 Alide2_0671 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF02518|PR00344|SM00387|SSF47384|SSF55874 Alide2_0672 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.1660.10|PF13591 Alide2_0673 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001623|IPR002939|IPR008971|IPR036869 Chaperone DnaJ, C-terminal|Chaperone J-domain superfamily|DnaJ domain|HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 G3DSA:1.10.287.110|G3DSA:2.60.260.20|PF00226|PF01556|PR00625|SM00271|SSF46565|SSF49493 Alide2_0674 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000485|IPR011008|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13404|PR00033|SM00344|SSF46785|SSF54909 Alide2_0675 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001347|IPR005855|IPR029055 Glucosamine-fructose-6-phosphate aminotransferase, isomerising|Nucleophile aminohydrolases, N-terminal|Sugar isomerase (SIS) GO:0004360|GO:0097367|GO:1901135|GO:1901137 G3DSA:3.40.50.10490|G3DSA:3.60.20.10|MF_00164|PF01380|PF13522|SSF53697|SSF56235|TIGR01135 Alide2_0676 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_0677 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_0679 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008878 Transposase IS66, Orf2 PF05717 Alide2_0680 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR010921 Transposase IS3/IS911family|Trp repressor/replication initiator GO:0003677|GO:0004803|GO:0006313|GO:0043565 PF01527|SSF48295 Alide2_0682 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000572|IPR036374 Oxidoreductase, molybdopterin-binding domain|Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 G3DSA:3.90.420.10|PF00174|SSF56524 Alide2_0683 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000516|IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane|Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016020|GO:0016021|GO:0022904 G3DSA:1.20.950.20|PF01292|PR00161|SSF81342 Alide2_0684 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 Alide2_0685 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 Alide2_0687 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002035|IPR013424|IPR036465 PEP-CTERM protein-sorting domain|von Willebrand factor A-like domain superfamily|von Willebrand factor, type A G3DSA:3.40.50.410|PF00092|PF07589|SM00327|SSF53300|TIGR02595 Alide2_0688 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001538|IPR005835|IPR006375|IPR011051|IPR014710|IPR029044 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase|Mannose-6-phosphate isomerase, type II, C-terminal|Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0000271|GO:0005976|GO:0009058|GO:0016779 G3DSA:2.60.120.10|G3DSA:3.90.550.10|PF00483|PF01050|SSF51182|SSF53448|TIGR01479 Alide2_0689 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003715|IPR017477|IPR019554 PEP-CTERM, putative polysaccharide export protein|Polysaccharide export protein|Soluble ligand binding domain GO:0015159|GO:0015774|GO:0016020 G3DSA:3.10.560.10|G3DSA:3.30.1950.10|PF02563|PF10531|TIGR03027 Alide2_0690 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014345|IPR032807 PEP-CTERM locus polysaccharide chain length determinant|Tyrosine kinase, G-rich domain PF13807|TIGR03007 Alide2_0691 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|SSF52540|TIGR03018 Alide2_0692 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017467 Conserved hypothetical protein CHP03016, PEP-CTERM TIGR03016 Alide2_0693 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR017466|IPR027417 AAA+ ATPase domain|ATPase, secretion system, PEP-CTERM, predicted|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13401|PR00364|SM00382|SSF52540|TIGR03015 Alide2_0694 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002509|IPR011330|IPR014344|IPR022560 Domain of unknown function DUF3473|Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain|PEP-CTERM locus, polysaccharide deactylase GO:0003824|GO:0005975|GO:0016810 G3DSA:3.20.20.370|PF01522|PF11959|SSF88713|TIGR03006 Alide2_0695 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016181|IPR017469|IPR038740 Acyl-CoA N-acyltransferase|BioF2-like, acetyltransferase domain|PEP-CTERM system-associated, FemAB-related G3DSA:3.40.630.30|PF13480|SSF55729|TIGR03019 Alide2_0696 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017521 Sugar transferase, PEP-CTERM, Stp1 G3DSA:3.40.50.2000|PF13692|SSF53756|TIGR03087 Alide2_0697 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013426|IPR014263|IPR017540|IPR019127|IPR026392 Exosortase|Exosortase 1|Exosortase, EpsH-like|Exosortase/Archaeosortase domain|Methanolan biosynthesis EpsI PF09721|PF11984|TIGR02602|TIGR02914|TIGR03109|TIGR04178 Alide2_0698 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001962|IPR006426|IPR014729|IPR017539|IPR017932|IPR029055 Asparagine synthase|Asparagine synthase, glutamine-hydrolyzing|Exosortase 1 system-associated amidotransferase 1|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold GO:0004066|GO:0006529 G3DSA:3.40.50.620|G3DSA:3.60.20.10|PF00733|PF13537|PIRSF001589|SSF52402|SSF56235|TIGR01536|TIGR03108 Alide2_0699 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001296|IPR017522|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain|Sugar transferase, PEP-CTERM, Stp2 G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756|TIGR03088 Alide2_0700 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13579|SSF53756 Alide2_0701 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001296|IPR028098 Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF00534|PF13439|SSF53756 Alide2_0702 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR038731 Glycosyltransferase RgtA/B/C/D-like PF13231 Alide2_0704 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007016|IPR017528 Conserved hypothetical protein CHP03097, O-antigen ligase-related|O-antigen ligase-related PF04932|TIGR03097 Alide2_0705 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002509|IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain GO:0003824|GO:0005975|GO:0016810 PF01522|SSF88713 Alide2_0706 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002509|IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain GO:0003824|GO:0005975|GO:0016810 PF01522|SSF88713 Alide2_0707 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016181|IPR038740 Acyl-CoA N-acyltransferase|BioF2-like, acetyltransferase domain PF13480|SSF55729 Alide2_0708 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 Alide2_0709 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029303 Polysaccharide biosynthesis protein, C-terminal domain PF13440|PF14667 Alide2_0710 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|PR01713|SSF51735 Alide2_0711 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001732|IPR008927|IPR014026|IPR014027|IPR017476|IPR028359|IPR036220|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0000271|GO:0016616|GO:0016628|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500136|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026 Alide2_0713 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016181|IPR038740 Acyl-CoA N-acyltransferase|BioF2-like, acetyltransferase domain PF13480|SSF55729 Alide2_0714 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013424|IPR025193 Domain of unknown function DUF4114|PEP-CTERM protein-sorting domain PF07589|PF13448|TIGR02595 Alide2_0715 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR017531|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Hydrolase, ortholog 1, exosortase system type 1 associated G3DSA:3.40.50.1820|PF12697|SSF53474|TIGR03100 Alide2_0716 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017532|IPR022742|IPR029058 Alpha/Beta hydrolase fold|Hydrolase, ortholog 2, exosortase system type 1 associated|Serine aminopeptidase, S33 G3DSA:3.40.50.1820|PF12146|SSF53474|TIGR03101 Alide2_0717 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009081|IPR036736 ACP-like superfamily|Phosphopantetheine binding ACP domain G3DSA:1.10.1200.10|PF00550|SSF47336 Alide2_0718 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR017529|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801|TIGR03098 Alide2_0719 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000183|IPR009006|IPR017530|IPR022643|IPR022644|IPR029066 Alanine racemase/group IV decarboxylase, C-terminal|Orn/DAP/Arg decarboxylase 2, C-terminal|Orn/DAP/Arg decarboxylase 2, N-terminal|Ornithine/DAP/Arg decarboxylase|PLP-binding barrel|Pyridoxal-dependent decarboxylase, exosortase system type 1 associated GO:0003824 G3DSA:2.40.37.10|G3DSA:3.20.20.10|PF00278|PF02784|PR01179|SSF50621|SSF51419|TIGR03099 Alide2_0720 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR014265|IPR029016|IPR036097|IPR036890 GAF-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, PEP-CTERM system, putative|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.40|G3DSA:3.30.565.10|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55781|SSF55874|TIGR02916 Alide2_0721 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR011006|IPR014264|IPR025662|IPR025943|IPR025944|IPR027417 AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, PEP-CTERM system, putative|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PR01590|PS00675|PS00676|PS00688|SM00382|SM00448|SSF46689|SSF52172|SSF52540|TIGR02915 Alide2_0722 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990|IPR014266|IPR019734 PEP-CTERM system TPR-repeat lipoprotein, putative|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13432|PF14559|SM00028|SSF48452|TIGR02917 Alide2_0723 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009003 Peptidase S1, PA clan G3DSA:2.40.10.10|PF13365|SSF50494 Alide2_0724 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic SSF103481 Alide2_0725 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000537|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|UbiA prenyltransferase family GO:0016021|GO:0016765 G3DSA:1.10.357.140|G3DSA:3.40.50.1000|PF01040|PF12710|SSF56784 Alide2_0726 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_0727 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0728 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|SSF82171 Alide2_0729 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004368|IPR006196|IPR012340 Nucleic acid-binding, OB-fold|RNA-binding domain, S1, IF1 type|Translation initiation factor IF-1 GO:0003723|GO:0003743|GO:0006413 G3DSA:2.40.50.140|MF_00075|PF01176|SSF50249|TIGR00008 Alide2_0730 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027450|IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like|Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily G3DSA:2.60.120.590|PF13532|SSF51197 Alide2_0731 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_0732 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001221|IPR001433|IPR017938|IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF00175|PR00410|SSF52343|SSF63380 Alide2_0733 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029058 Alpha/Beta hydrolase fold G3DSA:3.40.50.1820|SSF53474 Alide2_0734 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009045|IPR039561 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily|Peptidase M15C GO:0008233 G3DSA:3.30.1380.10|PF13539|SSF55166 Alide2_0735 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001853|IPR036249 DSBA-like thioredoxin domain|Thioredoxin-like superfamily GO:0015035 G3DSA:3.40.30.10|PF01323|SSF52833 Alide2_0736 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010292 Uncharacterised protein family CreA PF05981|PIRSF003174 Alide2_0737 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004101|IPR005479|IPR011810|IPR013221|IPR036565|IPR036615 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Cyanophycin synthetase|Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, central|Mur-like, catalytic domain superfamily GO:0005524|GO:0009058|GO:0009059|GO:0016874 G3DSA:3.30.470.20|G3DSA:3.40.1190.10|G3DSA:3.90.190.20|PF02786|PF02875|PF08245|SM01209|SSF53244|SSF53623|SSF56059|TIGR02068 Alide2_0738 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005479|IPR011810|IPR036565 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Cyanophycin synthetase|Mur-like, catalytic domain superfamily GO:0005524|GO:0009058|GO:0009059|GO:0016874 G3DSA:3.30.470.20|G3DSA:3.40.1190.10|PF02786|SSF56059|TIGR02068 Alide2_0739 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 Alide2_0740 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015005 Domain of unknown function DUF1854 PF08909 Alide2_0742 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000640|IPR000795|IPR005517|IPR009000|IPR014721|IPR020568|IPR027417|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Transcription factor, GTP-binding domain|Translation elongation factor EFG/EF2, domain IV|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525 G3DSA:2.40.30.10|G3DSA:3.30.230.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|PF00009|PF00679|PF03764|PF14492|SM00838|SM00889|SSF50447|SSF52540|SSF54211|SSF54980 Alide2_0743 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 PF06189 Alide2_0744 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003004|IPR011850|IPR018076 General secretion pathway protein F|GspF/PilC family|Type II secretion system F domain GO:0008565|GO:0015627|GO:0015628 G3DSA:1.20.81.30|PF00482|PR00812|TIGR02120 Alide2_0745 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011251|IPR019949|IPR036661 Luciferase family oxidoreductase, group 1|Luciferase-like domain|Luciferase-like domain superfamily GO:0016705|GO:0055114 G3DSA:3.20.20.30|PF00296|SSF51679|TIGR03558 Alide2_0746 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025991 Chemoreceptor zinc-binding domain G3DSA:1.20.120.30|PF13682 Alide2_0747 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001482|IPR003593|IPR027417|IPR037257 AAA+ ATPase domain|General secretory system II, protein E, N-terminal superfamily|P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00662|SM00382|SSF160246|SSF52540 Alide2_0748 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001775|IPR004846|IPR005644|IPR013356|IPR038591 GspD/PilQ family|NolW-like|NolW-like superfamily|Type II secretion system GspD|Type II/III secretion system GO:0008565|GO:0009306|GO:0015627|GO:0015628|GO:0019867 G3DSA:3.30.1370.120|PF00263|PF03958|PR00811|TIGR02517 Alide2_0749 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022792 Type II secretion system, protein N PF01203 Alide2_0750 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007690 Type II secretion system, protein M GO:0009306 PF04612 Alide2_0751 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024230|IPR025691 GspL periplasmic domain|GspL, cytoplasmic actin-ATPase-like domain G3DSA:3.30.420.380|PF05134|PF12693|SSF53067 Alide2_0752 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005628|IPR038072 General secretion pathway protein K|GspK, central domain superfamily GO:0009306|GO:0016021 PF03934|PIRSF002786|SSF158544|SSF54523 Alide2_0753 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012902 Prokaryotic N-terminal methylation site PF07963|PS00409|SSF54523|TIGR02532 Alide2_0754 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003413|IPR010052|IPR012902 Prokaryotic N-terminal methylation site|Type II secretion system protein I|Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.1300.30|PF02501|PF07963|PS00409|SSF54523|TIGR01707|TIGR02532 Alide2_0755 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002416|IPR012902 Prokaryotic N-terminal methylation site|Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 PF07963|PS00409|SSF54523|TIGR01708|TIGR02532 Alide2_0756 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000983|IPR010054|IPR012902|IPR013545 Bacterial general secretion pathway protein G-type pilin|General secretion pathway protein G|Prokaryotic N-terminal methylation site|Type II secretion system protein G GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.700.10|PF07963|PF08334|PR00813|PS00409|SSF54523|TIGR01710|TIGR02532 Alide2_0757 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024961 Type II secretion system protein C, N-terminal PF11356 Alide2_0758 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013078|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1 G3DSA:3.40.50.1240|PF00300|SM00855|SSF53254 Alide2_0759 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 MF_00719|PF02654 Alide2_0760 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000634|IPR001721|IPR001926|IPR005787|IPR036052|IPR038110 Pyridoxal-phosphate dependent enzyme|Serine/threonine dehydratase, pyridoxal-phosphate-binding site|Threonine dehydratase, ACT-like domain|Threonine dehydratase, ACT-like domain superfamily|Threonine dehydratase, biosynthetic|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004794|GO:0006520|GO:0009097|GO:0030170 G3DSA:3.40.1020.10|G3DSA:3.40.50.1100|PF00291|PF00585|PS00165|SSF53686|SSF55021|TIGR01124 Alide2_0761 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003718|IPR015946|IPR036102 K homology domain-like, alpha/beta|OsmC/Ohr family|OsmC/Ohr superfamily G3DSA:3.30.300.20|PF02566|SSF82784 Alide2_0762 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009078|IPR011566|IPR012347 Ferritin-like|Ferritin-like superfamily|Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 G3DSA:1.20.1260.10|MF_01658|PF03232|SSF47240 Alide2_0763 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002299|IPR023614 Porin domain superfamily|Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 G3DSA:2.40.160.10|PF13609|PR00184|SSF56935 Alide2_0764 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023614 Porin domain superfamily G3DSA:2.40.160.10|PF13609|SSF56935 Alide2_0765 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_0766 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR011650|IPR017439|IPR036264 Amidohydrolase|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|SSF53187|SSF55031|TIGR01891 Alide2_0767 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR025966|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Oligopeptide transport permease C-like, N-terminal domain GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 Alide2_0768 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 Alide2_0769 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 Alide2_0770 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005247|IPR008914|IPR036610 PEBP-like superfamily|Phosphatidylethanolamine-binding protein|YbhB/YbcL G3DSA:3.90.280.10|PF01161|SSF49777|TIGR00481 Alide2_0771 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000281|IPR001347|IPR009057|IPR036388 Helix-turn-helix protein RpiR|Homeobox-like domain superfamily|Sugar isomerase (SIS)|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|PS00356|SSF46689|SSF53697 Alide2_0772 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001585|IPR004730|IPR013785|IPR018225 Aldolase-type TIM barrel|Transaldolase type 1|Transaldolase, active site|Transaldolase/Fructose-6-phosphate aldolase GO:0003824|GO:0004801|GO:0005737|GO:0005975|GO:0006098 G3DSA:3.20.20.70|MF_00492|PF00923|PS00958|PS01054|SSF51569|TIGR00874 Alide2_0773 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001672|IPR018189|IPR023096 Phosphoglucose isomerase (PGI)|Phosphoglucose isomerase, C-terminal|Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 G3DSA:1.10.1390.10|G3DSA:3.40.50.10490|MF_00473|PF00342|PR00662|PS00174|PS00765|SSF53697 Alide2_0774 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001844|IPR002423|IPR018370|IPR027409|IPR027410|IPR027413 Chaperonin Cpn60|Chaperonin Cpn60, conserved site|Chaperonin Cpn60/TCP-1 family|GroEL-like apical domain superfamily|GroEL-like equatorial domain superfamily|TCP-1-like chaperonin intermediate domain superfamily GO:0005524|GO:0005737|GO:0006457|GO:0042026 G3DSA:1.10.560.10|G3DSA:3.30.260.10|G3DSA:3.50.7.10|MF_00600|PF00118|PR00298|PS00296|SSF48592|SSF52029|SSF54849|TIGR02348 Alide2_0775 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011032|IPR018369|IPR020818|IPR037124 Chaperonin GroES, conserved site|GroES chaperonin family|GroES chaperonin superfamily|GroES-like superfamily GO:0005524|GO:0005737|GO:0006457 G3DSA:2.30.33.40|MF_00580|PF00166|PR00297|PS00681|SM00883|SSF50129 Alide2_0776 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000086|IPR004821|IPR014729|IPR015797 Cytidyltransferase-like domain|NUDIX hydrolase domain|NUDIX hydrolase-like domain superfamily|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0009058|GO:0016787 G3DSA:3.40.50.620|G3DSA:3.90.79.10|PF00293|PF01467|SSF52374|SSF55811|TIGR00125 Alide2_0777 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002133|IPR022628|IPR022629|IPR022630|IPR022631|IPR022636 S-adenosylmethionine synthetase|S-adenosylmethionine synthetase superfamily|S-adenosylmethionine synthetase, C-terminal|S-adenosylmethionine synthetase, N-terminal|S-adenosylmethionine synthetase, central domain|S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0005524|GO:0006556 G3DSA:3.30.300.10|MF_00086|PF00438|PF02772|PF02773|PIRSF000497|PS00376|PS00377|SSF55973|TIGR01034 Alide2_0778 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PF03279|PIRSF026649 Alide2_0779 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PF03279|PIRSF026649 Alide2_0780 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0781 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0782 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0783 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019818|IPR024084 Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain GO:0000287|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|PF00180|PS00470|SM01329|SSF53659 Alide2_0784 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 Alide2_0785 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006073|IPR019987|IPR027417 GTP binding domain|GTP-binding protein, ribosome biogenesis, YsxC|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.300|MF_00321|PF01926|SSF52540|TIGR03598 Alide2_0786 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008168|IPR009056|IPR024167|IPR036909 Cytochrome c, class IC|Cytochrome c-like domain|Cytochrome c-like domain superfamily|Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 G3DSA:1.10.760.10|PF00034|PIRSF000005|PR00605|SSF46626 Alide2_0787 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007816 ResB-like domain PF05140 Alide2_0788 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002541|IPR017562 Cytochrome c assembly protein|Cytochrome c-type biogenesis protein CcsA GO:0017004|GO:0020037 PF01578|TIGR03144 Alide2_0789 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000572|IPR022867|IPR036374 Oxidoreductase, molybdopterin-binding domain|Oxidoreductase, molybdopterin-binding domain superfamily|Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0042128|GO:0043546|GO:0055114 G3DSA:3.90.420.10|MF_01206|PF00174|SSF56524 Alide2_0790 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013130|IPR022837 Ferric reductase transmembrane component-like domain|Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 MF_01207|PF01794 Alide2_0791 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 Alide2_0792 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000183|IPR002986|IPR009006|IPR022643|IPR022644|IPR029066 Alanine racemase/group IV decarboxylase, C-terminal|Diaminopimelate decarboxylase, LysA|Orn/DAP/Arg decarboxylase 2, C-terminal|Orn/DAP/Arg decarboxylase 2, N-terminal|Ornithine/DAP/Arg decarboxylase|PLP-binding barrel GO:0003824|GO:0008836|GO:0009089 G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_02120|PF00278|PF02784|PR01179|PR01181|SSF50621|SSF51419|TIGR01048 Alide2_0793 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032831 Prokaryotic lipoprotein-attachment site PF13627 Alide2_0794 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002908|IPR020895|IPR036524 Frataxin conserved site|Frataxin/CyaY|Frataxin/CyaY superfamily GO:0008199|GO:0016226 G3DSA:3.30.920.10|MF_00142|PF01491|PS01344|SM01219|SSF55387|TIGR03421 Alide2_0795 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001264|IPR001460|IPR012338|IPR023346|IPR031376|IPR036950 Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain superfamily|Penicillin binding protein transglycosylase domain|Penicillin-binding protein, OB-like domain|Penicillin-binding protein, transpeptidase GO:0008658 G3DSA:1.10.3810.10|G3DSA:3.40.710.10|PF00905|PF00912|PF17092|SSF53955|SSF56601|TIGR02074 Alide2_0796 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005883 Type IV pilus assembly protein PilM G3DSA:3.30.1490.300|G3DSA:3.30.420.40|PF11104|PIRSF019169|SSF53067|TIGR01175 Alide2_0797 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007813 Fimbrial assembly PilN PF05137 Alide2_0798 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007445|IPR014717 Pilus assembly protein, PilO|Translation elongation factor EF1B/ribosomal protein S6 G3DSA:3.30.70.60|PF04350|PIRSF016482 Alide2_0799 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007446 Pilus assembly protein PilP G3DSA:2.30.30.830|PF04351|PIRSF016481 Alide2_0800 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001775|IPR004845|IPR004846|IPR005644|IPR011662|IPR013355|IPR021731|IPR038591 AMIN domain|GspD/PilQ family|NolW-like|NolW-like superfamily|Secretin/TonB, short N-terminal domain|Type II secretion system GspD, conserved site|Type II/III secretion system|Type IV pilus secretin PilQ GO:0008565|GO:0009306|GO:0019867 G3DSA:2.60.40.3470|G3DSA:2.60.40.3500|G3DSA:3.30.1370.120|G3DSA:3.55.50.30|PF00263|PF03958|PF11741|PR00811|PS00875|SM00965|TIGR02515 Alide2_0801 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008009|IPR013783|IPR015919 Cadherin-like superfamily|Immunoglobulin-like fold|Putative Ig GO:0005509|GO:0016020 G3DSA:2.60.40.10|PF05345|SSF49313 Alide2_0802 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016037|IPR030960|IPR030963 3-dehydroquinate synthase AroB|3-dehydroquinate synthase domain|3-dehydroquinate synthase family GO:0003856|GO:0005737|GO:0009073|GO:0016838 G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|MF_00110|PF01761|PIRSF001455|SSF56796|TIGR01357 Alide2_0803 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003607|IPR006261|IPR006674|IPR023023|IPR026875 HD domain|HD/PDEase domain|Phosphohydrolase-associated domain|dNTP triphosphohydrolase|dNTP triphosphohydrolase, type 2 GO:0016793 G3DSA:1.10.3210.10|MF_01212|PF01966|PF13286|SM00471|SSF109604|TIGR01353 Alide2_0804 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009858 Protein of unknown function DUF1415 PF07209 Alide2_0805 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025714|IPR029063 Methyltransferase domain|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13679|SSF53335 Alide2_0806 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010061|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|SSF53720|TIGR01722 Alide2_0807 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_0809 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002686|IPR036515 Transposase IS200-like|Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:3.30.70.1290|PF01797|SM01321|SSF143422 Alide2_0810 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002489|IPR002932|IPR006982|IPR013785|IPR017932|IPR029055|IPR036485 Aldolase-type TIM barrel|Glutamate synthase domain|Glutamate synthase, alpha subunit, C-terminal|Glutamate synthase, alpha subunit, C-terminal domain superfamily|Glutamate synthase, central-N|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal GO:0003824|GO:0006537|GO:0006807|GO:0015930|GO:0016491|GO:0016638|GO:0055114 G3DSA:2.160.20.60|G3DSA:3.20.20.70|G3DSA:3.60.20.10|PF00310|PF01493|PF01645|PF04898|SSF51395|SSF56235|SSF69336 Alide2_0811 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006005|IPR009051|IPR023753|IPR028261|IPR036188 Alpha-helical ferredoxin|Dihydroprymidine dehydrogenase domain II|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016491|GO:0016639|GO:0051536|GO:0055114 G3DSA:1.10.1060.10|G3DSA:3.40.50.720|G3DSA:3.50.50.60|PF07992|PF14691|PR00419|SSF46548|SSF51971|TIGR01317 Alide2_0812 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001320|IPR001638|IPR018313 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site GO:0004970|GO:0016020 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SM00079|SSF53850 Alide2_0813 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 Alide2_0814 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 Alide2_0815 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021830 Protein of unknown function DUF3422 PF11902 Alide2_0816 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001045|IPR029063|IPR030373|IPR035246|IPR037163 Polyamine biosynthesis domain, conserved site|S-adenosyl-L-methionine-dependent methyltransferase|Spermidine synthase, tetramerisation domain|Spermidine synthase, tetramerisation domain superfamily|Spermidine/spermine synthases GO:0003824 G3DSA:2.30.140.10|G3DSA:3.40.50.150|MF_00198|PF01564|PF17284|PS01330|SSF53335 Alide2_0817 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003826|IPR016067|IPR017716 S-adenosylmethionine decarboxylase family, prokaryotic|S-adenosylmethionine decarboxylase proenzyme|S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 G3DSA:3.60.90.10|MF_00464|PF02675|SSF56276|TIGR03330 Alide2_0818 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_0819 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003453|IPR030802 ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE GO:0043190 PF02405|TIGR00056 Alide2_0820 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003399|IPR030970 Mce/MlaD|Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 PF02470|TIGR04430 Alide2_0821 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007428 MlaA lipoprotein GO:0016020 PF04333|PR01805 Alide2_0822 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC G3DSA:1.10.10.640|G3DSA:3.10.450.50|PF05494|PIRSF004649 Alide2_0823 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002645|IPR036513 STAS domain|STAS domain superfamily G3DSA:3.30.750.24|PF13466|SSF52091 Alide2_0824 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR013656|IPR029787|IPR035965 GGDEF domain|Nucleotide cyclase|PAS domain|PAS domain superfamily|PAS fold-4 G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF08448|SM00091|SM00267|SSF55073|SSF55785|TIGR00229|TIGR00254 Alide2_0825 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_0826 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000412|IPR013525 ABC-2 transporter|ABC-2 type transporter GO:0016020|GO:0016021|GO:0043190|GO:0055085 PF01061|PIRSF006648|PR00164 Alide2_0827 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002634|IPR036065 BolA protein|BolA-like superfamily G3DSA:3.30.300.90|PF01722|PIRSF003113|SSF82657 Alide2_0828 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001986|IPR005750|IPR013792|IPR036968 Enolpyruvate transferase domain|Enolpyruvate transferase domain superfamily|RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta|UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0003824|GO:0008760|GO:0016765|GO:0019277 G3DSA:3.65.10.10|MF_00111|PF00275|SSF55205|TIGR01072 Alide2_0829 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013820|IPR018198|IPR024893 ATP phosphoribosyltransferase HisG, short form|ATP phosphoribosyltransferase, catalytic domain|ATP phosphoribosyltransferase, conserved site GO:0000105|GO:0003879|GO:0005737 G3DSA:3.40.190.10|MF_01018|PF01634|PS01316|SSF53850|TIGR00070 Alide2_0830 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001692|IPR012131|IPR016161|IPR022695 Aldehyde/histidinol dehydrogenase|Histidinol dehydrogenase|Histidinol dehydrogenase, conserved site|Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.1980|MF_01024|PF00815|PIRSF000099|PR00083|PS00611|SSF53720|TIGR00069 Alide2_0833 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004839|IPR005861|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Histidinol-phosphate aminotransferase family|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0000105|GO:0003824|GO:0004400|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01023|PF00155|SSF53383 Alide2_0834 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000807|IPR020565|IPR020568|IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily|Imidazoleglycerol-phosphate dehydratase|Imidazoleglycerol-phosphate dehydratase, conserved site|Ribosomal protein S5 domain 2-type fold GO:0000105|GO:0004424 G3DSA:3.30.230.40|MF_00076|PF00475|PS00954|PS00955|SSF54211 Alide2_0835 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010139|IPR017926|IPR029062 Class I glutamine amidotransferase-like|Glutamine amidotransferase|Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 G3DSA:3.40.50.880|MF_00278|PF00117|PIRSF000495|SSF52317|TIGR01855 Alide2_0836 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006062|IPR006063|IPR011060|IPR013785|IPR023016 Aldolase-type TIM barrel|Histidine biosynthesis|Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase|Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA|Ribulose-phosphate binding barrel GO:0000105|GO:0003824|GO:0003949 G3DSA:3.20.20.70|MF_01014|PF00977|SSF51366|TIGR00007 Alide2_0837 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021986 Spherulation-specific family 4 PF12138 Alide2_0838 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR031617 Putative exopolysaccharide exporter PF16933 Alide2_0839 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001296|IPR022622 Domain of unknown function DUF3492|Glycosyl transferase, family 1 G3DSA:3.40.50.2000|PF00534|PF11997|SSF53756 Alide2_0840 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|SSF48452 Alide2_0841 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029016|IPR031583|IPR038367 GAF-like domain superfamily|PelD, GGDEF domain|PelD, GGDEF domain superfamily G3DSA:3.30.450.40|G3DSA:3.30.70.2880|PF16963|SSF55781 Alide2_0843 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13429|PF14559|SSF48452 Alide2_0844 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004352|IPR011330|IPR013785|IPR016925|IPR017853 Aldolase-type TIM barrel|Glycoside hydrolase superfamily|Glycoside hydrolase/deacetylase, beta/alpha-barrel|Glycoside-hydrolase family GH114, TIM-barrel domain|Uncharacterised conserved protein UCP029570 GO:0003824|GO:0005975 G3DSA:3.20.20.370|G3DSA:3.20.20.70|PF03537|PIRSF029570|SSF51445|SSF88713 Alide2_0845 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005886|IPR016040|IPR036291 NAD(P)-binding domain|NAD(P)-binding domain superfamily|UDP-glucose 4-epimerase GO:0003978|GO:0006012 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|PR01713|SSF51735|TIGR01179 Alide2_0846 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004651|IPR006062|IPR011060|IPR013785 Aldolase-type TIM barrel|Histidine biosynthesis|Histidine biosynthesis, HisF|Ribulose-phosphate binding barrel GO:0000105|GO:0000107|GO:0003824|GO:0005737 G3DSA:3.20.20.70|MF_01013|PF00977|SSF51366|TIGR00735 Alide2_0847 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002496|IPR026660|IPR038019 Phosphoribosyl-AMP cyclohydrolase|Phosphoribosyl-AMP cyclohydrolase domain|Phosphoribosyl-AMP cyclohydrolase domain superfamily GO:0000105|GO:0004635 G3DSA:3.10.20.400|MF_01021|PD002610|PF01502|SSF141734 Alide2_0848 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008179|IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase|Phosphoribosyl-ATP pyrophosphohydrolase-like GO:0000105|GO:0004636 G3DSA:1.10.287.1080|MF_01020|PF01503|SSF101386|TIGR03188 Alide2_0850 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 Alide2_0851 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001310|IPR019808|IPR036265 HIT-like superfamily|Histidine triad (HIT) protein|Histidine triad, conserved site G3DSA:3.30.428.10|PF11969|PR00332|PS00892|SSF54197 Alide2_0852 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003369|IPR006312 Sec-independent protein translocase protein TatA/B/E|Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 MF_00236|PF02416|TIGR01411 Alide2_0853 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003369|IPR018448 Sec-independent protein translocase protein TatA/B/E|Twin-arginine translocation protein TatB GO:0008565|GO:0015031|GO:0016020|GO:0043953 MF_00237|PF02416|PR01506|TIGR01410 Alide2_0854 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 MF_00902|PF00902|PR01840|TIGR00945 Alide2_0855 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001478|IPR001940|IPR009003|IPR011782|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.120|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494|TIGR02037 Alide2_0856 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002678|IPR036069 GTP cyclohydrolase 1 type 2/Nif3|GTP cyclohydrolase 1 type 2/Nif3 superfamily G3DSA:3.40.1390.30|PF01784|SSF102705|TIGR00486 Alide2_0857 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005255 PdxA family GO:0051287|GO:0055114 G3DSA:3.40.718.10|PF04166|SSF53659|TIGR00557 Alide2_0858 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001185|IPR019823|IPR036019|IPR037673 Gated mechanosensitive channel|Large-conductance mechanosensitive channel|Large-conductance mechanosensitive channel, conserved site|Large-conductance mechanosensitive channel/anditomin synthesis protein L GO:0008381|GO:0016021|GO:0034220 G3DSA:1.10.1200.120|MF_00115|PF01741|PR01264|PS01327|SSF81330|TIGR00220 Alide2_0859 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005805|IPR006317|IPR017941|IPR019470|IPR036922 Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily|Rieske iron-sulphur protein, C-terminal|Ubiquinol-cytochrome c reductase, iron-sulphur subunit|Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0016020|GO:0016491|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF00355|PF10399|PR00162|SSF50022|TIGR01416 Alide2_0860 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005797|IPR005798|IPR016174|IPR027387|IPR030689|IPR036150 Cytochrome b|Cytochrome b/b6, C-terminal|Cytochrome b/b6, C-terminal domain superfamily|Cytochrome b/b6, N-terminal|Cytochrome b/b6-like domain superfamily|Di-haem cytochrome, transmembrane GO:0006122|GO:0008121|GO:0009055|GO:0016020|GO:0016491|GO:0022904|GO:0045275 G3DSA:1.20.810.10|PF00032|PF00033|PIRSF038885|SSF81342|SSF81648 Alide2_0861 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002326|IPR036909 Cytochrome c-like domain superfamily|Cytochrome c1 GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF02167|SSF46626 Alide2_0862 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF13417|SSF47616|SSF52833 Alide2_0863 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007481|IPR036760 SspB-like superfamily|Stringent starvation protein B G3DSA:2.30.30.220|PF04386|SSF101738 Alide2_0865 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000185|IPR004027|IPR011115|IPR011116|IPR011130|IPR020937|IPR027417|IPR036266|IPR036670 P-loop containing nucleoside triphosphate hydrolase|Protein translocase subunit SecA|SEC-C motif|SecA DEAD-like, N-terminal|SecA Wing/Scaffold|SecA conserved site|SecA, Wing/Scaffold superfamily|SecA, preprotein cross-linking domain|SecA, preprotein cross-linking domain superfamily GO:0005524|GO:0006605|GO:0006886|GO:0016020|GO:0017038 G3DSA:1.10.3060.10|G3DSA:3.40.50.300|G3DSA:3.90.1440.10|MF_01382|PF01043|PF02810|PF07516|PF07517|PR00906|PS01312|SM00957|SM00958|SSF52540|SSF81767|SSF81886|TIGR00963 Alide2_0866 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002813|IPR016117 ArgJ-like domain superfamily|Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 G3DSA:3.10.20.340|G3DSA:3.60.70.12|MF_01106|PD004193|PF01960|SSF56266|TIGR00120 Alide2_0867 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008533|IPR027417 Domain of unknown function DUF815|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF05673|SSF52540 Alide2_0868 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000086|IPR015797|IPR020084|IPR020476 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|PF00293|PR00502|PS00893|SSF55811 Alide2_0869 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005584|IPR013088 DNA gyrase inhibitor YacG|Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 G3DSA:3.30.50.10|MF_00649|PF03884|SSF57716 Alide2_0870 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009777|IPR027462|IPR036268 Cell division protein ZapD|Z ring-associated protein D, C-terminal|ZapD domain superfamily G3DSA:1.10.3900.10|G3DSA:2.60.440.10|MF_01092|PF07072|SSF160950 Alide2_0871 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001977|IPR027417 Dephospho-CoA kinase|P-loop containing nucleoside triphosphate hydrolase GO:0004140|GO:0005524|GO:0015937 G3DSA:3.40.50.300|MF_00376|PF01121|SSF52540|TIGR00152 Alide2_0872 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000045|IPR010627|IPR014032 Peptidase A24A, N-terminal|Peptidase A24A, prepilin type IV, bacterial|Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 PF01478|PF06750|PR00864 Alide2_0873 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003004|IPR018076 GspF/PilC family|Type II secretion system F domain G3DSA:1.20.81.30|PF00482|PR00812 Alide2_0874 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001482|IPR003593|IPR007831|IPR013374|IPR027417|IPR037257 AAA+ ATPase domain|ATPase, type IV, pilus assembly, PilB|General secretory system II, protein E, N-terminal|General secretory system II, protein E, N-terminal superfamily|P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein GO:0005524|GO:0008565|GO:0009297 G3DSA:3.30.300.160|G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PF05157|PS00662|SM00382|SSF160246|SSF52540|TIGR02538 Alide2_0875 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349 Alide2_0876 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_0877 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system PF08843 Alide2_0878 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF13560|SM00530|SSF47413 Alide2_0881 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_0882 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_0883 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016634|IPR026881 WYL domain|WYL domain protein, s026 type PF13280|PIRSF015558 Alide2_0884 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|SSF56349 Alide2_0886 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_0887 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_0888 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000092|IPR008949|IPR033749 Isoprenoid synthase domain superfamily|Polyprenyl synthetase|Polyprenyl synthetase, conserved site GO:0008299 G3DSA:1.10.600.10|PF00348|PS00444|PS00723|SSF48576 Alide2_0889 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001787|IPR018258|IPR028909|IPR036164 L21-like superfamily|Ribosomal protein L21|Ribosomal protein L21, conserved site|Ribosomal protein L21-like GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_01363|PF00829|PS01169|SSF141091|TIGR00061 Alide2_0890 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001684|IPR018261 Ribosomal protein L27|Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.100|MF_00539|PD003114|PF01016|PR00063|PS00831|SSF110324|TIGR00062 Alide2_0891 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006073|IPR006074|IPR006169|IPR014100|IPR027417|IPR035101|IPR036726 GTP binding domain|GTP-binding protein Obg/CgtA|GTP-binding protein, Obg-type|GTP1/OBG domain|GTP1/OBG domain superfamily|GTP1/OBG, conserved site|P-loop containing nucleoside triphosphate hydrolase GO:0000287|GO:0003924|GO:0005525 G3DSA:2.70.210.12|G3DSA:3.40.50.300|MF_01454|PF01018|PF01926|PIRSF002401|PR00326|PS00905|SSF52540|SSF82051|TIGR02729 Alide2_0892 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001048|IPR001057|IPR002478|IPR005715|IPR011529|IPR015947|IPR019797|IPR036393|IPR036974 Acetylglutamate kinase-like superfamily|Aspartate/glutamate/uridylate kinase|Glutamate 5-kinase|Glutamate 5-kinase, conserved site|Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase|Glutamate/acetylglutamate kinase|PUA domain|PUA domain superfamily|PUA-like superfamily GO:0003723|GO:0004349|GO:0005737|GO:0006561 G3DSA:2.30.130.10|G3DSA:3.40.1160.10|MF_00456|PF00696|PF01472|PIRSF000729|PR00474|PS00902|SM00359|SSF53633|SSF88697|TIGR01027 Alide2_0893 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000086|IPR015797|IPR020084|IPR020476|IPR022927 NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily|RNA pyrophosphohydrolase RppH GO:0016787 G3DSA:3.90.79.10|MF_00298|PF00293|PR00502|PS00893|SSF55811 Alide2_0894 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002314|IPR002316|IPR004154|IPR004500|IPR007214|IPR023717|IPR036621|IPR036754 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Anticodon-binding domain superfamily|Proline-tRNA ligase, class IIa|Prolyl-tRNA synthetase, class IIa, bacterial-type|Prolyl-tRNA synthetase, class IIa, type 1|YbaK/aminoacyl-tRNA synthetase-associated domain|YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0000166|GO:0002161|GO:0004812|GO:0004827|GO:0005524|GO:0005737|GO:0006418|GO:0006433 G3DSA:3.30.930.10|G3DSA:3.40.50.800|G3DSA:3.90.960.10|MF_01569|PF00587|PF03129|PF04073|PIRSF001535|PR01046|SSF52954|SSF55681|SSF55826|TIGR00409 Alide2_0895 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 Alide2_0896 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644|IPR002550|IPR005170|IPR016169|IPR036318 CBS domain|CNNM, transmembrane domain|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Transporter-associated domain GO:0050660 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF01595|PF03471|SM01091|SSF54631|SSF56176 Alide2_0897 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR003959|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF00004|SM00382|SSF52540 Alide2_0898 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002109|IPR004480|IPR014434|IPR036249 Glutaredoxin|Monothiol glutaredoxin|Monothiol glutaredoxin-related|Thioredoxin-like superfamily GO:0009055|GO:0015035|GO:0015036|GO:0045454 G3DSA:3.40.30.10|PF00462|PIRSF005894|SSF52833|TIGR00365 Alide2_0899 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002052|IPR004556|IPR007848|IPR019874|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|Modification methylase HemK|Protein-(glutamine-N5) methyltransferase, release factor-specific|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0006479|GO:0008168|GO:0008276|GO:0032259 G3DSA:1.10.8.10|G3DSA:3.40.50.150|MF_02126|PF05175|PS00092|SSF53335|TIGR00536|TIGR03534 Alide2_0900 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000352|IPR004373|IPR005139 Peptide chain release factor|Peptide chain release factor 1|Peptide chain release factor class I/class II GO:0003747|GO:0005737|GO:0006415|GO:0016149 G3DSA:1.20.58.410|G3DSA:3.30.160.20|G3DSA:3.30.70.1660|MF_00093|PF00472|PF03462|PS00745|SM00937|SSF75620|TIGR00019 Alide2_0901 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000343|IPR006151|IPR015895|IPR015896|IPR018214|IPR036291|IPR036343|IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily|Glutamyl-tRNA reductase, N-terminal domain superfamily|Glutamyl-tRNA reductase, conserved site|NAD(P)-binding domain superfamily|Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 G3DSA:3.30.460.30|G3DSA:3.40.50.720|MF_00087|PF00745|PF01488|PF05201|PIRSF000445|PS00747|SSF51735|SSF69075|SSF69742|TIGR01035 Alide2_0903 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0904 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0905 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007709 N-formylglutamate amidohydrolase G3DSA:3.40.630.40|PF05013|SSF53187 Alide2_0906 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006685|IPR010920|IPR011014|IPR011066|IPR022249|IPR023408 Domain of unknown function DUF3772|LSM domain superfamily|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS domain superfamily|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020|GO:0055085 G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|PF12607|SSF50182|SSF82689|SSF82861 Alide2_0907 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017946|IPR030395 Glycerophosphodiester phosphodiesterase domain|PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 G3DSA:3.20.20.190|PF03009|SSF51695 Alide2_0908 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:2.40.50.940|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 Alide2_0909 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_0910 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_0911 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006059 Bacterial extracellular solute-binding protein G3DSA:3.40.190.10|PF13416|SSF53850 Alide2_0912 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006139|IPR006140|IPR029752|IPR029753|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.30.70.260|G3DSA:3.40.50.720|PF00389|PF02826|PS00065|PS00670|PS00671|SSF51735|SSF52283|SSF55021 Alide2_0913 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004017|IPR004113|IPR006094|IPR009051|IPR016164|IPR017896|IPR021817|IPR022153|IPR036318 4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Cysteine-rich domain|FAD linked oxidase, N-terminal|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Protein of unknown function DUF3400|Protein of unknown function DUF3683 GO:0003824|GO:0016491|GO:0050660|GO:0051536|GO:0055114 G3DSA:3.30.465.40|G3DSA:3.30.70.2740|PF01565|PF02754|PF02913|PF11880|PF12447|PF13183|SSF46548|SSF55103|SSF56176 Alide2_0914 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001310|IPR026026|IPR036265 HIT-like superfamily|Histidine triad (HIT) protein|Histidine triad hydrolase, Hint-type G3DSA:3.30.428.10|PF01230|PIRSF000714|SSF54197 Alide2_0915 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010376|IPR038492 GBBH-like, N-terminal domain superfamily|Gamma-butyrobetaine hydroxylase-like, N-terminal G3DSA:3.30.2020.30|PF06155 Alide2_0916 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004033|IPR023576|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|UbiE/COQ5 methyltransferase|UbiE/COQ5 methyltransferase, conserved site GO:0008168 G3DSA:3.40.50.150|MF_01813|PF01209|PS01183|SSF53335|TIGR01934 Alide2_0917 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007379|IPR032710 NTF2-like domain superfamily|Tim44-like domain PF04280|SM00978|SSF54427 Alide2_0919 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004147|IPR010232|IPR011009 Probable protein kinase UbiB|Protein kinase-like domain superfamily|UbiB domain GO:0006744 MF_00414|PF03109|SSF56112|TIGR01982 Alide2_0920 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001734|IPR018212|IPR038377 Sodium/glucose symporter superfamily|Sodium/solute symporter|Sodium/solute symporter, conserved site GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1730.10|PF00474|PS00457 Alide2_0921 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain PF09723|SM00834|TIGR02605 Alide2_0922 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007462 Protein of unknown function DUF502 PF04367 Alide2_0923 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002312|IPR004115|IPR004364|IPR004365|IPR004524|IPR012340|IPR029351 Aminoacyl-tRNA synthetase, class II (D/K/N)|Aspartate-tRNA ligase, type 1|Aspartyl/Asparaginyl-tRNA synthetase, class IIb|GAD domain|GAD-like domain superfamily|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0000166|GO:0003676|GO:0004812|GO:0005524|GO:0005737|GO:0006418|GO:0016874 G3DSA:2.40.50.140|G3DSA:3.30.1360.30|G3DSA:3.30.930.10|MF_00044|PF00152|PF01336|PF02938|PR01042|SSF50249|SSF55261|SSF55681|TIGR00459 Alide2_0924 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000086|IPR003564|IPR015797 Dihydroneopterin triphosphate diphosphatase|NUDIX hydrolase domain|NUDIX hydrolase-like domain superfamily GO:0008828|GO:0016787|GO:0019177|GO:0046656 G3DSA:3.90.79.10|PF00293|PR01404|SSF55811 Alide2_0925 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005135|IPR036691 Endonuclease/exonuclease/phosphatase|Endonuclease/exonuclease/phosphatase superfamily G3DSA:3.60.10.10|PF03372|SSF56219 Alide2_0926 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025202|IPR030872 Cardiolipin synthase B|Phospholipase D-like domain GO:0008808|GO:0032049 G3DSA:3.30.870.10|MF_01917|PF13091|SSF56024 Alide2_0927 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020602 GTP cyclohydrolase I domain G3DSA:1.10.286.10|G3DSA:3.30.1130.10|PF01227|SSF55620 Alide2_0928 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007024|IPR036046 Acylphosphatase-like domain superfamily|BLUF domain GO:0009882|GO:0071949 G3DSA:3.30.70.100|PF04940|SM01034|SSF54975 Alide2_0929 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_0930 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|G3DSA:3.40.190.10|PF00512|PF02518|PF12974|PR00344|SM00387|SM00388|SSF47384|SSF53850|SSF55874 Alide2_0931 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR016032|IPR036388 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 Alide2_0932 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009056|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF00034|SSF46626 Alide2_0935 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 Alide2_0936 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain G3DSA:3.90.1300.10|PF01425|SSF75304 Alide2_0937 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|SSF53850 Alide2_0938 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540 Alide2_0939 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 Alide2_0940 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_0941 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_0942 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain G3DSA:3.30.70.20|PF12838|PS00198|SSF54862 Alide2_0943 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001328|IPR018171|IPR036416 Peptidyl-tRNA hydrolase|Peptidyl-tRNA hydrolase superfamily|Peptidyl-tRNA hydrolase, conserved site GO:0004045 G3DSA:3.40.50.1470|MF_00083|PF01195|PS01196|SSF53178|TIGR00447 Alide2_0944 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001021|IPR011035|IPR020055|IPR020056|IPR020057|IPR029751|IPR037121 Ribosomal protein L25|Ribosomal protein L25, C-terminal|Ribosomal protein L25, beta domain|Ribosomal protein L25, long-form|Ribosomal protein L25, short-form|Ribosomal protein L25/Gln-tRNA synthetase, N-terminal|Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0008097 G3DSA:2.170.120.20|G3DSA:2.40.240.10|MF_01334|MF_01336|PD012503|PF01386|PF14693|SSF50715|TIGR00731 Alide2_0945 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000842|IPR005946|IPR029057|IPR029099|IPR037515 Phosphoribosyl pyrophosphate synthetase, conserved site|Phosphoribosyltransferase-like|Ribose-phosphate pyrophosphokinase|Ribose-phosphate pyrophosphokinase, N-terminal domain|Ribose-phosphate pyrophosphokinase, bacterial-type GO:0000287|GO:0004749|GO:0009156|GO:0009165|GO:0044249 G3DSA:3.40.50.2020|MF_00583_B|PF13793|PF14572|PS00114|SM01400|SSF53271|TIGR01251 Alide2_0946 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004424|IPR006204|IPR013750|IPR014721|IPR020568|IPR036554 4-diphosphocytidyl-2C-methyl-D-erythritol kinase|GHMP kinase N-terminal domain|GHMP kinase, C-terminal domain|GHMP kinase, C-terminal domain superfamily|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0005524|GO:0016114|GO:0050515 G3DSA:3.30.230.10|G3DSA:3.30.70.890|MF_00061|PF00288|PF08544|PIRSF010376|SSF54211|SSF55060|TIGR00154 Alide2_0947 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004565|IPR029046 Lipoprotein localisation LolA/LolB/LppX|Outer membrane lipoprotein LolB GO:0009279|GO:0015031 G3DSA:2.50.20.10|PF03550|SSF89392 Alide2_0948 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990|IPR019734 Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13432|PF14559|SM00028|SSF48452 Alide2_0949 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010663|IPR010979|IPR012319|IPR015886|IPR015887|IPR020629|IPR035937 DNA glycosylase/AP lyase, H2TH DNA-binding|DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site|Formamidopyrimidine-DNA glycosylase|Formamidopyrimidine-DNA glycosylase, catalytic domain|MutM-like, N-terminal|Ribosomal protein S13-like, H2TH|Zinc finger, FPG/IleRS-type GO:0003676|GO:0003677|GO:0003684|GO:0003906|GO:0006281|GO:0006284|GO:0006289|GO:0008270|GO:0008534|GO:0016799 G3DSA:1.10.8.50|G3DSA:3.20.190.10|MF_00103|PF01149|PF06827|PF06831|PS01242|SM00898|SM01232|SSF46946|SSF57716|SSF81624|TIGR00577 Alide2_0950 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022812|IPR027417 Dynamin superfamily|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF00350|SSF52540 Alide2_0951 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000445|IPR003265|IPR003651|IPR005760|IPR011257|IPR015797|IPR023170|IPR029119 A/G-specific adenine glycosylase MutY|DNA glycosylase|Endonuclease III-like, iron-sulphur cluster loop motif|Helix-hairpin-helix motif|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain|MutY, C-terminal|NUDIX hydrolase-like domain superfamily GO:0003677|GO:0003824|GO:0006281|GO:0006284|GO:0016787|GO:0019104|GO:0051539 G3DSA:1.10.1670.10|G3DSA:1.10.340.30|G3DSA:3.90.79.10|PF00633|PF00730|PF14815|SM00478|SM00525|SSF48150|SSF55811|TIGR01084 Alide2_0952 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005337|IPR027417 P-loop containing nucleoside triphosphate hydrolase|RapZ-like family GO:0005524 G3DSA:3.40.50.300|MF_00636|PF03668|PIRSF005052|SSF52540 Alide2_0953 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003395|IPR004604|IPR027417 DNA recombination/repair protein RecN|P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal GO:0005524|GO:0006281|GO:0006310 G3DSA:3.40.50.300|PF02463|PIRSF003128|SSF52540|TIGR00634 Alide2_0954 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002504|IPR016064|IPR017437|IPR017438 ATP-NAD kinase, PpnK-type, C-terminal|Inorganic polyphosphate/ATP-NAD kinase, N-terminal|NAD kinase|NAD kinase/diacylglycerol kinase-like domain superfamily GO:0003951|GO:0006741|GO:0019674 G3DSA:2.60.200.30|G3DSA:3.40.50.10330|MF_00361|PF01513|SSF111331 Alide2_0955 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002571|IPR005104|IPR021153|IPR023120|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Heat-inducible transcription repressor HrcA|Heat-inducible transcription repressor HrcA, C-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily|Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain|Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.390.60|G3DSA:3.30.450.40|MF_00081|PF01628|PF03444|PIRSF005485|SSF46785|SSF55781|TIGR00331 Alide2_0957 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029464 Type I restriction enzyme R protein, N-terminal domain PF13588 Alide2_0958 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_0959 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_0960 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954 Alide2_0961 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011322|IPR015867|IPR021634 Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal|Protein of unknown function DUF3240 G3DSA:3.30.70.120|PF11582|SSF54913 Alide2_0963 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002559|IPR012337|IPR024473 Ribonuclease H-like superfamily|Transposase, IS4, N-terminal|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|PF13006|SSF53098 Alide2_0964 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_0965 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 PF01292|SSF81342 Alide2_0966 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008217 Ccc1 family PF01988 Alide2_0967 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|SM00387|SM00388|SSF47384|SSF55874 Alide2_0968 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 Alide2_0971 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002328|IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0008270|GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|SM00829|SSF50129|SSF51735 Alide2_0972 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011048|IPR015943|IPR019405 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily|Lactonase, 7-bladed beta propeller|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|PF10282|SSF51004 Alide2_0973 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 Alide2_0974 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 Alide2_0975 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000573|IPR001030|IPR006249|IPR015928|IPR015931|IPR018136|IPR036008 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase family, 4Fe-4S cluster binding site|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/Iron-responsive element-binding protein 2 G3DSA:1.10.1440.20|G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.30.499.20|PF00330|PF00694|PR00415|PS00450|PS01244|SSF52016|SSF53732|TIGR01341 Alide2_0976 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0977 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0978 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004323|IPR011322|IPR015867 Divalent ion tolerance protein, CutA|Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0010038 G3DSA:3.30.70.120|PF03091|SSF54913 Alide2_0979 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013342|IPR029017|IPR029065|IPR036849 Enolase C-terminal domain-like|Enolase-like, C-terminal domain superfamily|Enolase-like, N-terminal|Mandelate racemase/muconate lactonizing enzyme, C-terminal G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF13378|SM00922|SSF51604|SSF54826 Alide2_0980 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SSF51735 Alide2_0981 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_0982 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002220|IPR013785 Aldolase-type TIM barrel|DapA-like GO:0003824|GO:0016829 G3DSA:3.20.20.70|PF00701|PIRSF001365|SM01130|SSF51569 Alide2_0983 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_0984 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000897|IPR003593|IPR004390|IPR013822|IPR027417|IPR036225 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|SRP/SRP receptor, N-terminal|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, helical bundle|Signal-recognition particle receptor FtsY GO:0005525|GO:0006614 G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00920|PF00448|PF02881|PS00300|SM00382|SM00962|SM00963|SSF47364|SSF52540|TIGR00064 Alide2_0985 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007863|IPR011249|IPR011765 Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16, C-terminal|Peptidase M16, N-terminal GO:0003824|GO:0046872 G3DSA:3.30.830.10|PF00675|PF05193|SSF63411 Alide2_0986 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007863|IPR011249 Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16, C-terminal GO:0003824|GO:0046872 G3DSA:3.30.830.10|PF05193|SSF63411 Alide2_0987 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004398|IPR029063 RNA methyltransferase, RsmD|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168|GO:0031167 G3DSA:3.40.50.150|PF03602|PIRSF004553|SSF53335|TIGR00095 Alide2_0988 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001980|IPR004821|IPR014729 Cytidyltransferase-like domain|Phosphopantetheine adenylyltransferase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824|GO:0004595|GO:0009058|GO:0015937 G3DSA:3.40.50.620|MF_00151|PF01467|PR01020|SSF52374|TIGR00125|TIGR01510 Alide2_0989 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 Alide2_0991 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009760 Protein of unknown function DUF1328 GO:0005886 MF_01361|PF07043|PIRSF036466 Alide2_0992 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR007891|IPR011712|IPR036890 CHASE3|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 G3DSA:1.20.1440.210|G3DSA:3.30.565.10|PF02518|PF05227|PF07730|SM00387|SSF55874 Alide2_0993 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal GO:0000160|GO:0003677|GO:0006355 G3DSA:3.40.50.12740|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 Alide2_0994 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.2300|PF00072|SM00448|SSF52172 Alide2_0995 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000594|IPR035985 THIF-type NAD/FAD binding fold|Ubiquitin-activating enzyme GO:0008641 G3DSA:3.40.50.720|PF00899|SSF69572 Alide2_0996 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001478|IPR004447|IPR005151|IPR029045|IPR036034 C-terminal-processing peptidase S41A|ClpP/crotonase-like domain superfamily|PDZ domain|PDZ superfamily|Tail specific protease GO:0005515|GO:0006508|GO:0008236 G3DSA:2.30.42.10|G3DSA:3.30.750.44|G3DSA:3.90.226.10|PF03572|PF13180|SM00228|SM00245|SSF50156|SSF52096|TIGR00225 Alide2_0997 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001345|IPR005952|IPR013078|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1|Phosphoglycerate mutase 1|Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0004619|GO:0006096|GO:0016868 G3DSA:3.40.50.1240|MF_01039|PF00300|PIRSF000709|PS00175|SM00855|SSF53254|TIGR01258 Alide2_0998 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 Alide2_0999 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002109|IPR011767|IPR011900|IPR014025|IPR036249 Glutaredoxin|Glutaredoxin active site|Glutaredoxin subgroup|Glutaredoxin, GrxC|Thioredoxin-like superfamily GO:0009055|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00462|PR00160|PS00195|SSF52833|TIGR02181 Alide2_1000 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003708|IPR035958 Bacterial protein export chaperone SecB|SecB-like superfamily GO:0015031|GO:0051082|GO:0051262 G3DSA:3.10.420.10|MF_00821|PF02556|PR01594|SSF54611|TIGR00809 Alide2_1001 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006109|IPR006168|IPR008927|IPR011128|IPR013328|IPR036291 6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|Glycerol-3-phosphate dehydrogenase, NAD-dependent|Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal|Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal|NAD(P)-binding domain superfamily GO:0004367|GO:0005975|GO:0006072|GO:0009331|GO:0016491|GO:0016616|GO:0046168|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|MF_00394|PF01210|PF07479|PIRSF000114|PR00077|PS00957|SSF48179|SSF51735 Alide2_1002 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016186|IPR016187 C-type lectin fold|C-type lectin-like/link domain superfamily G3DSA:3.10.100.10|SSF56436 Alide2_1003 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082 Alide2_1004 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 Alide2_1005 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009197|IPR010799|IPR015995 Microcystin LR degradation protein MlrC|Microcystin LR degradation protein MlrC, C-terminal|Microcystin LR degradation protein MlrC, N-terminal PF07171|PF07364|PIRSF012702 Alide2_1006 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1007 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1008 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003721|IPR014729 Pantoate-beta-alanine ligase|Rossmann-like alpha/beta/alpha sandwich fold GO:0004592|GO:0015940 G3DSA:3.30.1300.10|G3DSA:3.40.50.620|MF_00158|PF02569|SSF52374|TIGR00018 Alide2_1009 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003700|IPR015813 Ketopantoate hydroxymethyltransferase|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0003864|GO:0015940 G3DSA:3.20.20.60|MF_00156|PF02548|PIRSF000388|SSF51621|TIGR00222 Alide2_1011 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002638|IPR004393|IPR013785|IPR022412|IPR027277|IPR036068|IPR037128 Aldolase-type TIM barrel|Nicotinate phosphoribosyltransferase-like, C-terminal|Nicotinate-nucleotide pyrophosphorylase|Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD|Quinolinate phosphoribosyl transferase, C-terminal|Quinolinate phosphoribosyl transferase, N-terminal|Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0003824|GO:0004514|GO:0009435|GO:0016763|GO:0019363 G3DSA:3.20.20.70|G3DSA:3.90.1170.20|PF01729|PF02749|PIRSF006250|SSF51690|SSF54675|TIGR00078 Alide2_1012 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003473|IPR036094 Quinolinate synthetase A|Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 G3DSA:3.40.50.10800|PF02445|SSF142754|TIGR00550 Alide2_1013 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001544|IPR005801|IPR005802|IPR015890|IPR019999|IPR036038 ADC synthase|Aminotransferase class IV|Aminotransferase-like, PLP-dependent enzymes|Anthranilate synthase component I-like|Chorismate-utilising enzyme, C-terminal|Para-aminobenzoate synthase, component I GO:0003824|GO:0009058|GO:0009396 G3DSA:3.20.10.10|G3DSA:3.30.470.10|G3DSA:3.60.120.10|PF00425|PF01063|PR00095|SSF56322|SSF56752|TIGR00553 Alide2_1014 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004220|IPR014347 5-carboxymethyl-2-hydroxymuconate isomerase|Tautomerase/MIF superfamily GO:0008704|GO:0019439 G3DSA:3.30.429.10|PF02962|SSF55331 Alide2_1015 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003953|IPR005288|IPR015939|IPR027477|IPR036188|IPR037099 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily|L-aspartate oxidase|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily GO:0005737|GO:0008734|GO:0009435|GO:0016491|GO:0055114 G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:3.90.700.10|PF00890|PF02910|PR00368|SSF46977|SSF51905|SSF56425|TIGR00551 Alide2_1016 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR018060|IPR018062|IPR032783 AraC-type transcription regulator, ligand-binding domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12833|PF12852|PS00041|SM00342|SSF46689 Alide2_1017 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR004675|IPR010195|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like|Uncharacterised peroxidase-related GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118|TIGR00778|TIGR01926 Alide2_1018 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003768 Segregation and condensation protein A MF_01805|PF02616 Alide2_1019 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021853 Protein of unknown function DUF3460 PF11943 Alide2_1021 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011766|IPR012001|IPR029035|IPR029061 DHS-like NAD/FAD-binding domain superfamily|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0003824|GO:0030976 G3DSA:3.40.50.970|PF02775|PF02776|SSF52467|SSF52518 Alide2_1022 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000262|IPR008259|IPR012133|IPR013785 Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent alpha-hydroxy acid dehydrogenase, active site|FMN-dependent dehydrogenase GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF01070|PIRSF000138|PS00557|SSF51395 Alide2_1023 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003953|IPR014614|IPR027477|IPR036188 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily|Uncharacterised conserved protein UCP036654 GO:0016627|GO:0055114 G3DSA:3.50.50.60|G3DSA:3.90.700.10|PF00890|PIRSF036654|SSF51905 Alide2_1024 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR018060|IPR032687 DNA binding HTH domain, AraC-type|HTH-type transcriptional regulator AraC-type, N-terminal|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12625|PF12833|SM00342|SSF46689 Alide2_1025 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017926|IPR029062 Class I glutamine amidotransferase-like|Glutamine amidotransferase G3DSA:3.40.50.880|PF00117|SSF52317 Alide2_1026 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001608|IPR011078|IPR029066 Alanine racemase, N-terminal|PLP-binding barrel|Pyridoxal phosphate homeostasis protein GO:0030170 G3DSA:3.20.20.10|MF_02087|PF01168|PIRSF004848|SSF51419|TIGR00044 Alide2_1027 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PF03594|TIGR00843 Alide2_1028 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR004839|IPR015421|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|PF00155|PF00392|PR00035|SM00345|SSF46785|SSF53383 Alide2_1030 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001412|IPR002547|IPR004495|IPR009080|IPR012340|IPR014729|IPR014758|IPR015413|IPR023458|IPR029038|IPR033911 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Methionine-tRNA ligase, type 1|Methioninyl-tRNA synthetase core domain|Methionyl-tRNA synthetase|Methionyl-tRNA synthetase, Zn-domain|Methionyl-tRNA synthetase, beta subunit, C-terminal|Methionyl/Leucyl tRNA synthetase|Nucleic acid-binding, OB-fold|Rossmann-like alpha/beta/alpha sandwich fold|tRNA-binding domain GO:0000049|GO:0000166|GO:0004812|GO:0004825|GO:0005524|GO:0005737|GO:0006418|GO:0006431 G3DSA:1.10.730.10|G3DSA:2.20.28.20|G3DSA:2.40.50.140|G3DSA:3.40.50.620|MF_00098|PF01588|PF09334|PR01041|PS00178|SSF47323|SSF50249|SSF52374|SSF57770|TIGR00398|TIGR00399 Alide2_1031 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|PF01734|SSF52151 Alide2_1032 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007560|IPR011335 Restriction endonuclease type II-like|Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 PF04471|SSF52980 Alide2_1033 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001763|IPR017582|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily|tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 G3DSA:3.40.250.10|PF00581|SM00450|SSF52821|TIGR03167 Alide2_1034 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004536|IPR010918|IPR016188|IPR023061|IPR036676|IPR036921 PurM-like, C-terminal domain|PurM-like, C-terminal domain superfamily|PurM-like, N-terminal domain|PurM-like, N-terminal domain superfamily|Selenophosphate synthetase|Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_00625|PF00586|PF02769|PIRSF036407|SSF55326|SSF56042|TIGR00476 Alide2_1035 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 PF03595 Alide2_1036 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000808|IPR002744|IPR019591|IPR027417|IPR033756|IPR034904 Fe-S cluster assembly domain superfamily|Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35|MIP18 family-like|Mrp, conserved site|Mrp/NBP35 ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.30.300.130|G3DSA:3.40.50.300|MF_02040|PF01883|PF10609|PS01215|SSF117916|SSF52540 Alide2_1037 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 Alide2_1038 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1039 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|G3DSA:3.30.1330.120|PF03972|SSF103378 Alide2_1040 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|SSF47203|SSF56645 Alide2_1041 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1042 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288 Alide2_1043 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_1044 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR011206|IPR015813 Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|PIRSF015582|SSF51621 Alide2_1045 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001949|IPR011538|IPR019554|IPR019575|IPR036249|IPR037207|IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily|NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site|Soluble ligand binding domain|Thioredoxin-like superfamily GO:0008137|GO:0010181|GO:0051539|GO:0055114 G3DSA:1.10.10.1590|G3DSA:1.20.1440.230|G3DSA:3.10.20.600|G3DSA:3.40.30.10|G3DSA:3.40.50.11540|PF01257|PF01512|PF10531|PF10589|PS00644|PS00645|SM00928|SSF140490|SSF142019|SSF142984|SSF52833 Alide2_1046 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006478|IPR006655|IPR006656|IPR006657|IPR006963|IPR009010|IPR017896|IPR017900|IPR036010 2Fe-2S ferredoxin-like superfamily|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Aspartate decarboxylase-like domain superfamily|Formate dehydrogenase, alpha subunit|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0008863|GO:0009055|GO:0015942|GO:0016491|GO:0043546|GO:0051536|GO:0055114 G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.10.20.740|G3DSA:3.30.70.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04879|PF13187|PF13510|PIRSF036643|PS00198|PS00490|SM00926|SSF50692|SSF53706|SSF54292|SSF54862|TIGR01591 Alide2_1047 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021736 Protein of unknown function DUF3305 PF11749 Alide2_1048 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021735 Protein of unknown function DUF3306 PF11748 Alide2_1049 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain G3DSA:3.30.70.20|PF00037|PF12838|PF13187|PS00198|SSF54862 Alide2_1050 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020945|IPR036411 DMSO/Nitrate reductase chaperone|TorD-like superfamily G3DSA:1.10.3480.10|PF02613|SSF89155 Alide2_1051 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014177 Putative formate dehydrogenase, TAT signal-containing PIRSF036704|TIGR02811 Alide2_1052 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006656|IPR006657|IPR006963|IPR009010|IPR027467 Aspartate decarboxylase-like domain superfamily|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0016491|GO:0043546|GO:0051539|GO:0055114 G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04879|PIRSF036643|PS00551|SM00926|SSF50692|SSF53706 Alide2_1053 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000813|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|7Fe ferredoxin GO:0009055 G3DSA:3.30.70.20|PF13247|PR00354|PS00198|SSF54862 Alide2_1055 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006471|IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane|Formate dehydrogenase, gamma subunit GO:0008863|GO:0009055|GO:0009326|GO:0016020|GO:0016021|GO:0022904|GO:0045333 G3DSA:1.20.950.20|PF01292|SSF81342|TIGR01583 Alide2_1057 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003786|IPR016193 Cytidine deaminase-like|Sulfur carrier protein FdhD GO:0003824|GO:0016783 G3DSA:3.10.20.10|G3DSA:3.40.140.10|MF_00187|PF02634|PIRSF015626|SSF53927 Alide2_1060 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011009|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Protein kinase-like domain superfamily G3DSA:3.40.50.300|PF13671|SSF52540|SSF56112 Alide2_1061 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000962|IPR037187 DksA, N-terminal domain superfamily|Zinc finger, DksA/TraR C4-type GO:0008270 G3DSA:1.20.120.910|PF01258|SSF109635|SSF57716 Alide2_1062 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001486|IPR009050|IPR012292 Globin-like superfamily|Globin/Protoglobin|Truncated hemoglobin GO:0019825|GO:0020037 G3DSA:1.10.490.10|PF01152|SSF46458 Alide2_1063 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288 Alide2_1064 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015813|IPR018523 Isocitrate lyase/phosphorylmutase, conserved site|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF13714|PS00161|SSF51621 Alide2_1065 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000573|IPR011827|IPR015928 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase, swivel|Hydrolyase LeuD/HacB/DmdB GO:0016836 G3DSA:3.20.19.10|PF00694|SSF52016|TIGR02087 Alide2_1066 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001030|IPR006251|IPR015931|IPR036008 Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 G3DSA:3.30.499.10|G3DSA:3.30.499.20|PF00330|PR00415|SSF53732|TIGR01343 Alide2_1067 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1068 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002625|IPR036063 Smr domain|Smr domain superfamily G3DSA:3.30.1370.110|PF01713|SM00463|SSF160443 Alide2_1069 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027372 Phytase-like domain PF13449 Alide2_1070 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001405|IPR020891|IPR025657 RadC-like JAB domain|Uncharacterised protein family UPF0758|Uncharacterised protein family UPF0758, conserved site G3DSA:3.40.140.10|PF04002|PS01302|SSF102712|TIGR00608 Alide2_1071 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain G3DSA:2.40.10.330|G3DSA:3.10.50.40|PF00254|SSF54534 Alide2_1072 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 G3DSA:3.40.1010.20|G3DSA:3.40.50.11270|MF_00191|PF02401|TIGR00216 Alide2_1073 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644|IPR002550|IPR005170|IPR016169|IPR036318 CBS domain|CNNM, transmembrane domain|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Transporter-associated domain GO:0050660 G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF01595|PF03471|SM00116|SM01091|SSF54631|SSF56176 Alide2_1074 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644 CBS domain G3DSA:3.10.580.10|PF00571|SM00116|SSF54631 Alide2_1075 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002314|IPR002317|IPR010978|IPR015866 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm|Serine-tRNA ligase, type1|Serine-tRNA synthetase, type1, N-terminal GO:0000166|GO:0004812|GO:0004828|GO:0005524|GO:0005737|GO:0006418|GO:0006434 G3DSA:1.10.287.40|G3DSA:3.30.930.10|MF_00176|PF00587|PF02403|PIRSF001529|PR00981|SSF46589|SSF55681|TIGR00414 Alide2_1076 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021134 Bestrophin/UPF0187 PF01062 Alide2_1079 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 Alide2_1080 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012441 Protein of unknown function DUF1643 PF07799 Alide2_1081 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF13560|SM00530|SSF47413 Alide2_1082 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|SSF53335 Alide2_1083 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR027417 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13481|SM00382|SSF52540 Alide2_1085 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014966 FRG domain PF08867|SM00901 Alide2_1088 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021134 Bestrophin/UPF0187 PF01062 Alide2_1090 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003362|IPR017464|IPR017475 Bacterial sugar transferase|Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase|Sugar transferase, PEP-CTERM system associated G3DSA:3.40.50.720|PF02397|TIGR03013|TIGR03025 Alide2_1091 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR004358|IPR007890|IPR017181|IPR035965|IPR036097|IPR036890 CHASE2|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain superfamily|Signal transduction histidine kinase, CHASE2 sensor domain-containing, predicted|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF02518|PF05226|PIRSF037347|PR00344|SM00387|SM01080|SSF47384|SSF55785|SSF55874 Alide2_1092 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006860|IPR013783|IPR016930|IPR018392|IPR036779 FecR protein|Immunoglobulin-like fold|LysM domain|LysM domain superfamily|Uncharacterised conserved protein UCP029644, LysM, PA4035 G3DSA:2.60.120.1440|G3DSA:2.60.40.10|G3DSA:3.10.350.10|PF01476|PF04773|PIRSF029644|SM00257 Alide2_1093 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 Alide2_1094 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001412|IPR002305|IPR002306|IPR010879|IPR014729|IPR024109|IPR036913 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ic|Domain of unknown function DUF1508|Rossmann-like alpha/beta/alpha sandwich fold|Tryptophan-tRNA ligase|Tryptophan-tRNA ligase, bacterial-type|YegP-like superfamily GO:0000166|GO:0004812|GO:0004830|GO:0005524|GO:0005737|GO:0006418|GO:0006436 G3DSA:1.10.240.10|G3DSA:3.40.50.620|MF_00140_B|PF00579|PF07411|PR01039|PS00178|SSF160113|SSF52374|TIGR00233 Alide2_1096 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004089|IPR004090|IPR004091 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor, methyl-accepting site|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|PF00015|PR00260|PS00538|SM00283|SSF58104 Alide2_1097 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006070|IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily|YrdC-like domain GO:0003725 G3DSA:3.90.870.10|PF01300|SSF55821|TIGR00057 Alide2_1098 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003141|IPR004013|IPR016195 PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like GO:0003824 G3DSA:1.10.150.650|G3DSA:3.20.20.140|PF02811|SM00481|SSF89550 Alide2_1099 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003660|IPR004089|IPR004090 Chemotaxis methyl-accepting receptor|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF00672|PR00260|SM00283|SM00304|SSF58104 Alide2_1100 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001667|IPR003156|IPR004610|IPR038763 Bacterial RecJ exonuclease|DDH domain|DHH phosphoesterase superfamily|DHHA1 domain GO:0003676|GO:0006281|GO:0006310|GO:0008409 G3DSA:3.10.310.30|G3DSA:3.90.1640.30|PF01368|PF02272|SSF64182|TIGR00644 Alide2_1101 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.30.70.2130 Alide2_1102 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003838|IPR011925|IPR025857 ABC transporter permease protein domain|Lipoprotein-releasing system transmembrane protein LolC/E|MacB-like periplasmic core domain GO:0016020|GO:0016021|GO:0042953|GO:0042954 PF02687|PF12704|TIGR02212 Alide2_1103 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR011924|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Lipoprotein releasing system, ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016020|GO:0016887|GO:0044873 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR02211 Alide2_1104 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002324|IPR009056|IPR036909 Cytochrome c, class ID|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF00034|PR00606|SSF46626 Alide2_1105 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR031044 Small Trp-rich protein TIGR04438 Alide2_1106 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000581|IPR004404|IPR020558|IPR037237 Dihydroxy-acid dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site|IlvD/EDD, N-terminal domain GO:0003824|GO:0004160|GO:0009082 G3DSA:3.50.30.80|MF_00012|PF00920|PS00886|PS00887|SSF143975|SSF52016|TIGR00110 Alide2_1107 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000581|IPR004404|IPR020558|IPR037237 Dihydroxy-acid dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site|IlvD/EDD, N-terminal domain GO:0003824|GO:0004160|GO:0009082 G3DSA:3.50.30.80|MF_00012|PF00920|PS00886|PS00887|SSF143975|SSF52016|TIGR00110 Alide2_1108 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 Alide2_1109 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002024|IPR008331|IPR009078|IPR012347 Bacterioferritin|Ferritin-like|Ferritin-like superfamily|Ferritin/DPS protein domain GO:0006826|GO:0006879|GO:0008199 G3DSA:1.20.1260.10|PF00210|PIRSF002560|PR00601|PS00549|SSF47240|TIGR00754 Alide2_1110 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 MF_01147|PF01790|PS01311|TIGR00544 Alide2_1111 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 Alide2_1112 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007956|IPR035372|IPR038351 Malonyl-CoA decarboxylase, C-terminal|Malonyl-CoA decarboxylase, N-terminal|Malonyl-CoA decarboxylase, N-terminal domain superfamily GO:0006633|GO:0050080 G3DSA:1.20.140.90|G3DSA:3.40.630.150|PF05292|PF17408 Alide2_1113 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1114 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_1115 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_1116 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:3.40.50.620|PF00582|PIRSF006276|PR01438|SSF52402 Alide2_1117 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR006121|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036163|IPR036259|IPR036412 HAD superfamily|HAD-like superfamily|Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|MFS transporter superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872 G3DSA:2.70.150.20|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PS00154|SSF103473|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525 Alide2_1118 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004714 Cytochrome oxidase maturation protein cbb3-type PF03597|TIGR00847 Alide2_1119 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000883|IPR004677|IPR023615|IPR036927 Cytochrome c oxidase cbb3-type, subunit I|Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I, copper-binding site|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0045278|GO:0055114 G3DSA:1.20.210.10|PF00115|PS00077|SSF81442|TIGR00780 Alide2_1120 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003468|IPR036909 Cytochrome c oxidase, monohaem subunit/FixO|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF02433|SSF46626|TIGR00781 Alide2_1121 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008621 Cbb3-type cytochrome oxidase component PF05545 Alide2_1122 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004678|IPR008168|IPR009056|IPR032858|IPR036909|IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal|Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily|Cytochrome c oxidase cbb3-type, subunit III|Cytochrome c, class IC|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|G3DSA:1.20.58.1490|PF13442|PF14715|PIRSF000006|PR00605|SSF46626|TIGR00782 Alide2_1123 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013783|IPR014116|IPR017896|IPR017900|IPR032879 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Cytochrome c oxidase cbb3 type, accessory protein FixG|FixG, C-terminal immunoglobulin-like domain|Immunoglobulin-like fold GO:0016021|GO:0055114 G3DSA:2.60.40.10|PF11614|PF12801|PF13746|PS00198|SSF54862|TIGR02745 Alide2_1124 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008620 Nitrogen fixation protein FixH PF05751 Alide2_1126 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PR00034|SM00100|SM00419|SSF46785|SSF51206 Alide2_1127 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004558|IPR006638|IPR007197|IPR010723|IPR023404 Elp3/MiaB/NifB|HemN, C-terminal|Oxygen-independent coproporphyrinogen III oxidase HemN|Radical SAM|Radical SAM, alpha/beta horseshoe GO:0003824|GO:0004109|GO:0005737|GO:0006779|GO:0051536|GO:0055114 G3DSA:1.10.10.920|G3DSA:3.80.30.20|PF04055|PF06969|PIRSF000167|SM00729|SSF102114|TIGR00538 Alide2_1128 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR039447 Urease accessory protein UreH-like, transmembrane domain PF13386 Alide2_1129 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003607|IPR006675|IPR021812 HD/PDEase domain|HDIG domain|Protein of unknown function DUF3391 G3DSA:1.10.3210.10|PF11871|PF13487|SM00471|SSF109604|TIGR00277 Alide2_1130 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR001633|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase|PAS domain|PAS domain superfamily G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF13188|PF13426|SM00052|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254 Alide2_1131 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007838|IPR036192 Cell division protein ZapA-like|Cell division protein ZapA-like superfamily G3DSA:1.10.20.30|PF05164|SSF102829 Alide2_1133 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 Alide2_1134 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002586|IPR011698|IPR027417|IPR029062 Class I glutamine amidotransferase-like|CobB/CobQ-like glutamine amidotransferase|CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase GO:0003824|GO:0009236 G3DSA:3.40.50.300|G3DSA:3.40.50.880|PF01656|PF07685|SSF52317|SSF52540 Alide2_1135 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003203|IPR027417 Cobinamide kinase/cobinamide phosphate guanyltransferase|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0009236|GO:0043752|GO:0051188 G3DSA:3.40.50.300|PF02283|PIRSF006135|SSF52540 Alide2_1136 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002491 ABC transporter periplasmic binding domain G3DSA:3.40.50.1980|PF01497|SSF53807 Alide2_1137 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000522|IPR037294 ABC transporter, BtuC-like|ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 Alide2_1138 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_1139 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003724|IPR027417 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0008817|GO:0009236 G3DSA:3.40.50.300|PF02572|PIRSF015617|SSF52540|TIGR00708 Alide2_1140 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001497|IPR008332|IPR014048|IPR023546|IPR036217|IPR036388|IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily|Methylated DNA-protein cysteine methyltransferase, DNA binding domain|Methylated-DNA--protein-cysteine methyltransferase|Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylated-DNA-[protein]-cysteine S-methyltransferase, active site|Methylguanine DNA methyltransferase, ribonuclease-like domain|Winged helix-like DNA-binding domain superfamily GO:0003824|GO:0003908|GO:0006281 G3DSA:1.10.10.10|G3DSA:3.30.160.70|MF_00772|PF01035|PF02870|PS00374|SSF46767|SSF53155|TIGR00589 Alide2_1141 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 PF08241|SSF53335 Alide2_1142 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001155|IPR013785 Aldolase-type TIM barrel|NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF00724|SSF51395 Alide2_1143 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1144 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1145 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 Alide2_1146 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SSF51735 Alide2_1147 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1148 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_1149 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1150 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032710|IPR037401 NTF2-like domain superfamily|SnoaL-like domain G3DSA:3.10.450.50|PF13577|SSF54427 Alide2_1151 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_1152 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_1153 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02771|SSF47203|SSF56645 Alide2_1154 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_1157 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR006108|IPR006176|IPR008927|IPR029045|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase|NAD(P)-binding domain superfamily GO:0003824|GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.50|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|SSF48179|SSF51735|SSF52096 Alide2_1158 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_1159 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF02803|PIRSF000429|SSF53901 Alide2_1160 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002878|IPR012340 Domain of unknown function DUF35, OB-fold, C-terminal|Nucleic acid-binding, OB-fold PF01796|SSF50249 Alide2_1161 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003781|IPR013815|IPR016102|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF56059 Alide2_1162 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00073|SSF47203|SSF56645 Alide2_1163 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_1164 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039 Thiolase|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PIRSF000429|SSF53901 Alide2_1165 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002878|IPR012340|IPR022002 Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold G3DSA:1.10.12.20|PF01796|PF12172|SSF50249 Alide2_1166 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930 Alide2_1167 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|SSF53850 Alide2_1168 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000049|IPR012255|IPR014729|IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055 G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|SM00893|SSF52402 Alide2_1169 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035 DHS-like NAD/FAD-binding domain superfamily|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|SM00893|SSF52402|SSF52467 Alide2_1170 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02771|PIRSF016578|SSF47203|SSF56645 Alide2_1171 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_1172 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1173 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007523|IPR036748 MTH938-like superfamily|NDUFAF3/Mth938 domain-containing protein G3DSA:3.40.1230.10|PF04430|SSF64076 Alide2_1174 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 Alide2_1175 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001342|IPR002912|IPR005106|IPR016204|IPR019811|IPR036291 ACT domain|Aspartate/homoserine dehydrogenase, NAD-binding|Homoserine dehydrogenase|Homoserine dehydrogenase, catalytic|Homoserine dehydrogenase, conserved site|NAD(P)-binding domain superfamily GO:0004412|GO:0006520|GO:0016491|GO:0050661|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.30.70.260|G3DSA:3.40.50.720|PF00742|PF01842|PF03447|PIRSF000098|PS01042|SSF51735|SSF55021|SSF55347 Alide2_1176 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006442|IPR036165 Type II toxin-antitoxin system, antitoxin Phd/YefM|YefM-like superfamily G3DSA:3.40.1620.10|PF02604|SSF143120|TIGR01552 Alide2_1177 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002716|IPR022907|IPR029060 PIN domain|PIN-like domain superfamily|VapC family GO:0004540 G3DSA:3.40.50.1010|MF_00265|PF01850|SSF88723 Alide2_1178 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001926|IPR004450|IPR029144|IPR036052|IPR037158 Pyridoxal-phosphate dependent enzyme|Threonine synthase, N-terminal|Threonine synthase, N-terminal domain superfamily|Threonine synthase-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme G3DSA:3.40.50.1100|G3DSA:3.90.1380.10|PF00291|PF14821|SSF53686|TIGR00260 Alide2_1179 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004435|IPR027417 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain|P-loop containing nucleoside triphosphate hydrolase GO:0005525|GO:0006777 G3DSA:2.20.25.120|G3DSA:3.40.50.300|PF03205|SSF52540|TIGR00176 Alide2_1180 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001453|IPR005110|IPR005111|IPR036135|IPR036425|IPR036688 MoaB/Mog domain|MoaB/Mog-like domain superfamily|MoeA, C-terminal, domain IV|MoeA, C-terminal, domain IV superfamily|MoeA, N-terminal and linker domain|MoeA, N-terminal and linker domain superfamily GO:0032324 G3DSA:2.170.190.11|G3DSA:2.40.340.10|G3DSA:3.40.980.10|G3DSA:3.90.105.10|PF00994|PF03453|PF03454|SM00852|SSF53218|SSF63867|SSF63882|TIGR00177 Alide2_1181 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003749|IPR012675|IPR016155 Beta-grasp domain superfamily|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|Sulfur carrier ThiS/MoaD-like G3DSA:3.10.20.30|PF02597|SSF54285 Alide2_1182 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002220|IPR005263|IPR013785|IPR020624|IPR020625 4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, active site|Schiff base-forming aldolase, conserved site GO:0003824|GO:0008840|GO:0009089|GO:0016829 G3DSA:3.20.20.70|MF_00418|PF00701|PIRSF001365|PR00146|PS00665|PS00666|SM01130|SSF51569|TIGR00674 Alide2_1184 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021494 Protein of unknown function DUF3149 PF11346 Alide2_1186 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003448|IPR036563 Molybdopterin biosynthesis MoaE|Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 G3DSA:3.90.1170.40|PF02391|SSF54690 Alide2_1187 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001270|IPR003593|IPR003959|IPR004176|IPR017730|IPR018368|IPR019489|IPR027417|IPR028299|IPR036628 AAA+ ATPase domain|ATPase, AAA-type, core|Chaperonin ClpB|Clp ATPase, C-terminal|Clp, N-terminal|Clp, N-terminal domain superfamily|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009408|GO:0019538|GO:0042026 G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|SM00382|SM01086|SSF52540|SSF81923|TIGR03346 Alide2_1189 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012394|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase NAD(P)-dependent|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0006081|GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PIRSF036492|PS00070|PS00687|SSF53720 Alide2_1190 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 Alide2_1191 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007848|IPR029063 Methyltransferase small domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF05175|SSF53335 Alide2_1192 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001269|IPR013785|IPR018517|IPR032886 Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine(16) synthase GO:0002943|GO:0003824|GO:0008033|GO:0017150|GO:0050660|GO:0055114 G3DSA:1.20.225.30|G3DSA:3.20.20.70|MF_02043|PF01207|PIRSF006621|PS01136|SSF51395 Alide2_1193 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001736|IPR025202 Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824 G3DSA:3.30.870.10|PF13091|SM00155|SSF56024 Alide2_1194 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002125|IPR002734|IPR004794|IPR011549|IPR016192|IPR016193|IPR024072 APOBEC/CMP deaminase, zinc-binding|Bacterial bifunctional deaminase-reductase, C-terminal|Cytidine and deoxycytidylate deaminase domain|Cytidine deaminase-like|Dihydrofolate reductase-like domain superfamily|Riboflavin biosynthesis protein RibD|Riboflavin-specific deaminase, C-terminal GO:0003824|GO:0008270|GO:0008703|GO:0008835|GO:0009231|GO:0016787|GO:0050661|GO:0055114 G3DSA:3.40.140.10|G3DSA:3.40.430.10|PF00383|PF01872|PIRSF006769|PS00903|SSF53597|SSF53927|TIGR00227|TIGR00326 Alide2_1195 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012902|IPR031982 Prokaryotic N-terminal methylation site|Type IV minor pilin ComP G3DSA:3.30.700.10|PF07963|PF16732|PS00409|SSF54523|TIGR02532 Alide2_1196 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008707 PilC beta-propeller domain PF05567 Alide2_1197 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025205|IPR025746 PilX/PilW C-terminal domain|Type 4 fimbrial biogenesis protein PilX, N-terminal domain PF13681|PF14341 Alide2_1198 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012902|IPR032092 Prokaryotic N-terminal methylation site|Type IV Pilus-assembly protein W GO:0043683 PF07963|PF16074|PS00409|TIGR02532 Alide2_1199 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012902|IPR013362 Pilus modification type IV, PilV|Prokaryotic N-terminal methylation site PF07963|PS00409|TIGR02523 Alide2_1200 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.700.10|PF12019|SSF54523 Alide2_1201 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 MF_00024|PF03186|TIGR00380 Alide2_1202 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 Alide2_1203 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004459|IPR011698|IPR027417|IPR029062 Class I glutamine amidotransferase-like|CobB/CobQ-like glutamine amidotransferase|Cobyric acid synthase CobQ|P-loop containing nucleoside triphosphate hydrolase GO:0003824|GO:0009236 G3DSA:3.40.50.300|G3DSA:3.40.50.880|MF_00028|PF07685|PF13500|SSF52317|SSF52540|TIGR00313 Alide2_1204 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003200|IPR017846|IPR023195|IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal|Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic|Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like|Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009163|GO:0009236 G3DSA:1.10.1610.10|G3DSA:3.40.50.10210|MF_00230|PF02277|SSF52733|TIGR03160 Alide2_1205 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002589 Macro domain G3DSA:3.40.220.10|PF01661|SM00506|SSF52949 Alide2_1206 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000445|IPR003265|IPR003651|IPR004035|IPR004036|IPR005759|IPR011257|IPR023170 DNA glycosylase|Endonuclease III|Endonuclease III, iron-sulphur binding site|Endonuclease III-like, conserved site-2|Endonuclease III-like, iron-sulphur cluster loop motif|Helix-hairpin-helix motif|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain GO:0003677|GO:0003824|GO:0003906|GO:0006281|GO:0006284|GO:0051539 G3DSA:1.10.1670.10|G3DSA:1.10.340.30|MF_00942|PF00633|PF00730|PF10576|PIRSF001435|PS00764|PS01155|SM00478|SM00525|SSF48150|TIGR01083 Alide2_1207 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1208 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain G3DSA:3.90.1300.10|PF01425|SSF75304 Alide2_1209 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1210 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010499|IPR011256|IPR029442 Bacterial transcription activator, effector binding|GyrI-like small molecule binding domain|Regulatory factor, effector binding domain superfamily G3DSA:3.20.80.10|PF06445|SM00871|SSF55136 Alide2_1211 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 Alide2_1212 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007236 SlyX PF04102 Alide2_1213 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020471|IPR023210|IPR036812 Aldo/keto reductase|NADP-dependent oxidoreductase domain|NADP-dependent oxidoreductase domain superfamily GO:0016491|GO:0055114 G3DSA:3.20.20.100|PF00248|PR00069|SSF51430 Alide2_1214 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008457 Copper resistance protein D GO:0016021 PF05425 Alide2_1215 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024530 Putative quorum-sensing-regulated virulence factor PD056452|PF12843 Alide2_1216 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009050|IPR012292 Globin-like superfamily|Globin/Protoglobin GO:0019825|GO:0020037 G3DSA:1.10.490.10|SSF46458 Alide2_1217 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012312|IPR019903 Haemerythrin-like|Repair of iron centres family G3DSA:1.20.120.520|PF01814|PF04405|TIGR03652 Alide2_1218 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000944|IPR036388|IPR036390 Transcription regulator Rrf2-type|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF02082|SSF46785|TIGR00738 Alide2_1219 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010650|IPR013153|IPR016230|IPR027417 P-loop containing nucleoside triphosphate hydrolase|PrkA AAA domain|PrkA C-terminal domain|Serine-protein kinase, PrkA GO:0004672 PF06798|PF08298|PIRSF000549|SM00763|SSF52540 Alide2_1220 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006698 Uncharacterised protein family UPF0229 MF_01232|PF04285 Alide2_1221 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007390 Sporulation stage V, protein R PF04293 Alide2_1222 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004872 Lipoprotein NlpA family G3DSA:3.40.190.10|PF03180|PIRSF002854|SSF53850|TIGR00363 Alide2_1223 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010559|IPR036890 Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 G3DSA:3.30.565.10|PF06580|SSF55874 Alide2_1224 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000362|IPR008948|IPR009049|IPR020557|IPR022761|IPR024083|IPR029419 Argininosuccinate lyase|Argininosuccinate lyase, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004056|GO:0042450 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|MF_00006|PF00206|PF14698|PR00145|PR00149|PS00163|SSF48557|TIGR00838 Alide2_1225 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1226 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001599|IPR002890|IPR011625 Alpha-2-macroglobulin|Alpha-2-macroglobulin, N-terminal|Alpha-2-macroglobulin, N-terminal 2 GO:0004866 PF00207|PF01835|PF07703|PF11974|SM01359|SM01360 Alide2_1227 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004843|IPR006186 Calcineurin-like phosphoesterase domain, ApaH type|Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 PF00149|PR00114|SSF56300 Alide2_1228 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_1229 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1230 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006034|IPR027473|IPR027474|IPR036152|IPR037152 Asparaginase/glutaminase-like|Asparaginase/glutaminase-like superfamily|L-asparaginase, C-terminal|L-asparaginase, N-terminal|L-asparaginase, N-terminal domain superfamily G3DSA:3.40.50.1170|G3DSA:3.40.50.40|PF00710|PIRSF001220|PIRSF500176|PR00139|SM00870|SSF53774 Alide2_1231 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_1232 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003781|IPR013815|IPR016102|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF56059 Alide2_1233 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|SSF47203|SSF56645 Alide2_1234 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1235 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018148|IPR036914 Methylglyoxal synthase, active site|Methylglyoxal synthase-like domain superfamily GO:0008929|GO:0019242 G3DSA:3.40.50.1380|PS01335|SSF52335 Alide2_1236 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001264|IPR001460|IPR009647|IPR011815|IPR012338|IPR023346|IPR036950 Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain superfamily|Penicillin binding protein transglycosylase domain|Penicillin-binding protein 1C|Penicillin-binding protein, transpeptidase|Penicillin-binding, C-terminal GO:0008658|GO:0008955|GO:0009252 G3DSA:1.10.3810.10|G3DSA:3.40.710.10|PF00905|PF00912|PF06832|SSF53955|SSF56601|TIGR02073 Alide2_1237 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025293 YfiR-like PF13689 Alide2_1238 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR003660|IPR029787|IPR033417 GGDEF domain|HAMP domain|Nucleotide cyclase|Periplasmic sensor domain CHASE8 GO:0007165|GO:0016021 G3DSA:3.30.70.270|PF00990|PF17152|SM00267|SM00304|SSF55073|TIGR00254 Alide2_1239 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006664|IPR006665|IPR036737 OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial GO:0009279|GO:0016021 G3DSA:3.30.1330.60|PF00691|PR01021|SSF103088 Alide2_1240 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000262|IPR008259|IPR012133|IPR013785 Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent alpha-hydroxy acid dehydrogenase, active site|FMN-dependent dehydrogenase GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF01070|PIRSF000138|PS00557|SSF51395 Alide2_1241 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic SSF103481 Alide2_1242 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR036250 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0055114 G3DSA:1.20.140.10|G3DSA:2.40.110.20|PF00441|PF02770|PS00073|SSF47203|SSF56645 Alide2_1243 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1244 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1245 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1246 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001126|IPR017961|IPR022880|IPR024728|IPR036775 DNA polymerase IV|DNA polymerase type-Y, HhH motif|DNA polymerase, Y-family, little finger domain|DNA polymerase, Y-family, little finger domain superfamily|UmuC domain GO:0003684|GO:0003887|GO:0006281 G3DSA:1.10.150.20|G3DSA:2.30.40.20|G3DSA:3.30.1490.100|G3DSA:3.30.70.270|MF_01113|PF00817|PF11798|PF11799|SSF100879|SSF56672 Alide2_1247 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR001610|IPR004089|IPR004090|IPR013655|IPR035965 Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain|PAC motif|PAS domain|PAS domain superfamily|PAS fold-3 GO:0004888|GO:0005515|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|G3DSA:3.30.450.20|PF00015|PF08447|PR00260|SM00086|SM00283|SSF55785|SSF58104|TIGR00229 Alide2_1248 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016428|IPR029139|IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF|NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal|NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0033739|GO:0046857|GO:0055114 G3DSA:3.30.1130.10|MF_00817|PF14489|PF14819|PIRSF004750|SSF55620|TIGR03138 Alide2_1249 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005123|IPR006620 Oxoglutarate/iron-dependent dioxygenase|Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016491|GO:0016705|GO:0031418|GO:0055114 G3DSA:2.60.120.620|PF13640|SM00702 Alide2_1250 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005583 Peroxide stress protein YaaA MF_00652|PF03883 Alide2_1251 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003029|IPR004659|IPR012340|IPR019307|IPR022967|IPR028878 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|RNA-binding protein AU-1/Ribonuclease E/G|Ribonuclease E|Ribonuclease E/G|S1 domain GO:0003676|GO:0003723|GO:0004540|GO:0006396|GO:0008995 G3DSA:2.40.50.140|G3DSA:3.40.1260.20|MF_00970|PF00575|PF10150|SM00316|SSF50249|TIGR00757 Alide2_1252 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002942|IPR006145|IPR006224|IPR006225|IPR020103|IPR036986 Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|PS01129|SM00363|SSF55120|SSF55174|TIGR00005 Alide2_1253 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006439|IPR023198|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2 GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01509|TIGR01549 Alide2_1254 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017941|IPR036922 Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF00355|SSF50022 Alide2_1255 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002142|IPR029045 ClpP/crotonase-like domain superfamily|Peptidase S49 GO:0006508|GO:0008233 G3DSA:3.40.1750.20|G3DSA:3.90.226.10|PF01343|SSF52096 Alide2_1256 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000878|IPR014776|IPR014777|IPR035996 Tetrapyrrole methylase|Tetrapyrrole methylase superfamily|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2 GO:0008168 G3DSA:3.30.950.10|G3DSA:3.40.1010.10|PF00590|SSF53790 Alide2_1257 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003697|IPR029001 Inosine triphosphate pyrophosphatase-like|Maf-like protein GO:0047429 G3DSA:3.90.950.10|MF_00528|PF02545|PIRSF006305|SSF52972|TIGR00172 Alide2_1258 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003772 Large ribosomal RNA subunit accumulation protein YceD PF02620 Alide2_1259 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002677|IPR011332 Ribosomal protein L32p|Zinc-binding ribosomal protein GO:0003735|GO:0006412|GO:0015934 MF_00340|PF01783|SSF57829|TIGR01031 Alide2_1260 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003664|IPR012281 Fatty acid synthesis PlsX protein|Phospholipid biosynthesis protein, PlsX-like GO:0003824|GO:0006633|GO:0016747 G3DSA:3.40.718.10|MF_00019|PF02504|PIRSF002465|SSF53659|TIGR00182 Alide2_1261 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004655|IPR013747|IPR013751|IPR016039 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III|3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal|3-oxoacyl-[acyl-carrier-protein] synthase 3|Thiolase-like GO:0003824|GO:0004315|GO:0006633 G3DSA:3.40.47.10|MF_01815|PF08541|PF08545|SSF53901|TIGR00747 Alide2_1262 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001227|IPR004410|IPR014043|IPR016035|IPR016036|IPR020801|IPR024925 Acyl transferase|Acyl transferase domain superfamily|Acyl transferase/acyl hydrolase/lysophospholipase|Malonyl CoA-acyl carrier protein transacylase|Malonyl CoA-acyl carrier protein transacylase, FabD-type|Malonyl-CoA ACP transacylase, ACP-binding|Polyketide synthase, acyl transferase domain GO:0004314|GO:0016740 G3DSA:3.30.70.250|G3DSA:3.40.366.10|PF00698|PIRSF000446|SM00827|SSF52151|SSF55048|TIGR00128 Alide2_1263 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR011284|IPR020904|IPR036291 3-oxoacyl-(acyl-carrier-protein) reductase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0004316|GO:0006633|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01830 Alide2_1264 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003231|IPR006162|IPR009081|IPR020806|IPR036736 ACP-like superfamily|Acyl carrier protein (ACP)|Phosphopantetheine attachment site|Phosphopantetheine binding ACP domain|Polyketide synthase, phosphopantetheine-binding domain GO:0006633|GO:0031177 G3DSA:1.10.1200.10|MF_01217|PD000887|PF00550|PS00012|SM00823|SSF47336|TIGR00517 Alide2_1265 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014030|IPR014031|IPR016039|IPR017568|IPR018201|IPR020841 3-oxoacyl-[acyl-carrier-protein] synthase 2|Beta-ketoacyl synthase, C-terminal|Beta-ketoacyl synthase, N-terminal|Beta-ketoacyl synthase, active site|Polyketide synthase, beta-ketoacyl synthase domain|Thiolase-like GO:0003824|GO:0006633|GO:0016747 G3DSA:3.40.47.10|PF00109|PF02801|PIRSF000447|PS00606|SM00825|SSF53901|TIGR03150 Alide2_1267 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000838|IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR014286|IPR036388 RNA polymerase sigma factor 70, ECF, conserved site|RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 RpoE type|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PS01063|SSF88659|SSF88946|TIGR02937|TIGR02939 Alide2_1268 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005572|IPR036147 Anti sigma-E protein RseA, N-terminal|Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 G3DSA:1.10.10.880|PF03872|SSF89069 Alide2_1269 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005588|IPR033434|IPR033436|IPR038484 MucB/RseB|MucB/RseB, C-terminal|MucB/RseB, C-terminal domain superfamily|MucB/RseB, N-terminal G3DSA:2.50.20.10|G3DSA:3.30.200.100|PF03888|PF17188|PIRSF005427 Alide2_1270 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001478|IPR001940|IPR009003|IPR011782|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.120|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494|TIGR02037 Alide2_1271 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000640|IPR000795|IPR004161|IPR005225|IPR006297|IPR009000|IPR013842|IPR027417|IPR031157|IPR035647|IPR038363 EF-G domain III/V-like|Elongation factor 4|Elongation factor EFG, domain V-like|GTP-binding protein LepA, C-terminal|LepA, C-terminal domain superfamily|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525 G3DSA:2.40.30.10|G3DSA:3.30.70.2570|G3DSA:3.30.70.3380|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00071|PF00009|PF00679|PF03144|PF06421|PR00315|PS00301|SM00838|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR01393 Alide2_1272 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000223|IPR015927|IPR019533|IPR019756|IPR019757|IPR019758|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C|Peptidase S26|Peptidase S26A, signal peptidase I|Peptidase S26A, signal peptidase I, conserved site|Peptidase S26A, signal peptidase I, lysine active site|Peptidase S26A, signal peptidase I, serine active site GO:0006508|GO:0008236|GO:0016020|GO:0016021 G3DSA:2.10.109.10|G3DSA:2.170.230.10|PF00717|PF10502|PR00727|PS00501|PS00760|PS00761|SSF51306|TIGR02227 Alide2_1273 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032314 Protein of unknown function DUF4845 PF16137 Alide2_1274 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000999|IPR011907|IPR014720|IPR036389 Double-stranded RNA-binding domain|Ribonuclease III|Ribonuclease III domain|Ribonuclease III, endonuclease domain superfamily GO:0003723|GO:0004525|GO:0006396|GO:0016075 G3DSA:1.10.1520.10|G3DSA:3.30.160.20|MF_00104|PF00035|PF14622|PS00517|SM00358|SM00535|SSF54768|SSF69065|TIGR02191 Alide2_1275 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004044|IPR005225|IPR005662|IPR006073|IPR009019|IPR015946|IPR027417 GTP binding domain|GTP-binding protein Era|K Homology domain, type 2|K homology domain superfamily, prokaryotic type|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain GO:0003723|GO:0005525|GO:0005622 G3DSA:3.30.300.20|G3DSA:3.40.50.300|MF_00367|PF01926|PF07650|PR00326|SSF52540|SSF54814|TIGR00231|TIGR00436 Alide2_1276 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003717|IPR012340|IPR022572|IPR037278 ARFGAP/RecO-like zinc finger|DNA replication/recombination mediator RecO, N-terminal|Nucleic acid-binding, OB-fold|Recombination protein O, RecO GO:0006281|GO:0006310 G3DSA:1.20.1440.120|G3DSA:2.40.50.140|MF_00201|PF02565|PF11967|SSF50249|SSF57863|TIGR00613 Alide2_1277 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004569|IPR013785|IPR036130 Aldolase-type TIM barrel|Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ|Pyridoxine 5'-phosphate synthase GO:0003824|GO:0005737|GO:0008615|GO:0033856 G3DSA:3.20.20.70|MF_00279|PF03740|SSF63892|TIGR00559 Alide2_1278 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002582|IPR004568|IPR008278|IPR037143 4'-phosphopantetheinyl transferase domain|4'-phosphopantetheinyl transferase domain superfamily|Holo-[acyl carrier protein] synthase|Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 G3DSA:3.90.470.20|MF_00101|PD004282|PF01648|SSF56214|TIGR00516|TIGR00556 Alide2_1279 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001764|IPR017853|IPR022956|IPR036962 Beta-hexosaminidase, bacterial|Glycoside hydrolase superfamily|Glycoside hydrolase, family 3, N-terminal|Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0004563|GO:0005975 G3DSA:3.20.20.300|MF_00364|PF00933|SSF51445 Alide2_1280 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000023|IPR012003|IPR012829|IPR022953|IPR035966 ATP-dependent 6-phosphofructokinase|ATP-dependent 6-phosphofructokinase, prokaryotic-type|Phosphofructokinase domain|Phosphofructokinase superfamily|Phosphofructokinase, mixed-substrate PFK group III GO:0003872|GO:0005524|GO:0006002|GO:0006096|GO:0008443|GO:0047334 G3DSA:3.40.50.450|G3DSA:3.40.50.460|MF_01976|PF00365|PIRSF000532|PR00476|SSF53784 Alide2_1281 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030660 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|High-affinity branched-chain amino acid transport ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015658|GO:0015803|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039137|PS00211|SM00382|SSF52540 Alide2_1282 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_1283 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851|IPR021807 ABC transporter, permease|High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal GO:0016020|GO:0022857|GO:0055085 PF02653|PF11862 Alide2_1284 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_1285 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 Alide2_1286 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006685|IPR010920 LSM domain superfamily|Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PF00924|SSF50182 Alide2_1287 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002313|IPR004364|IPR004365|IPR012340|IPR018149 Aminoacyl-tRNA synthetase, class II (D/K/N)|Lysine-tRNA ligase, class II|Lysyl-tRNA synthetase, class II, C-terminal|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0000166|GO:0003676|GO:0004812|GO:0004824|GO:0005524|GO:0005737|GO:0006418|GO:0006430 G3DSA:2.40.50.140|G3DSA:3.30.930.10|MF_00252|PF00152|PF01336|PR00982|SSF50249|SSF55681|TIGR00499 Alide2_1288 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003362 Bacterial sugar transferase PF02397 Alide2_1289 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000653|IPR015421|IPR015422|IPR015424 DegT/DnrJ/EryC1/StrS aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01041|PIRSF000390|SSF53383 Alide2_1290 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13649|SSF53335 Alide2_1291 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 Alide2_1292 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain G3DSA:3.40.50.2000|PF13477|PF13692|SSF53756 Alide2_1293 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001451|IPR011004 Hexapeptide repeat|Trimeric LpxA-like superfamily G3DSA:2.160.10.10|PF00132|SSF51161 Alide2_1294 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF13440 Alide2_1295 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003869|IPR036291 NAD(P)-binding domain superfamily|Polysaccharide biosynthesis protein, CapD-like domain G3DSA:3.40.50.720|PF02719|PF13727|SSF51735 Alide2_1296 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003111|IPR015947 Lon, substrate-binding domain|PUA-like superfamily G3DSA:1.10.4060.10|G3DSA:2.30.130.40|PF02190|SM00464|SSF88697 Alide2_1297 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003425 CCB3/YggT GO:0016020 PF02325 Alide2_1298 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000438|IPR029045|IPR034733 Acetyl-CoA carboxylase|Acetyl-CoA carboxylase carboxyl transferase, beta subunit|ClpP/crotonase-like domain superfamily GO:0003989|GO:0006633|GO:0009317 G3DSA:3.90.226.10|MF_01395|PF01039|PR01070|SSF52096|TIGR00515 Alide2_1299 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002028|IPR011060|IPR013785|IPR018204 Aldolase-type TIM barrel|Ribulose-phosphate binding barrel|Tryptophan synthase, alpha chain|Tryptophan synthase, alpha chain, active site GO:0003824|GO:0004834|GO:0006568 G3DSA:3.20.20.70|MF_00131|PF00290|PS00167|SSF51366|TIGR00262 Alide2_1300 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001926|IPR006653|IPR006654|IPR023026|IPR036052 Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta chain/beta chain-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme|Tryptophan synthase, beta chain|Tryptophan synthase, beta chain, conserved site GO:0000162|GO:0004834|GO:0006568 G3DSA:3.40.50.1100|MF_00133|PF00291|PIRSF001413|PS00168|SSF53686|TIGR00263 Alide2_1301 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001240|IPR011060|IPR013785 Aldolase-type TIM barrel|N-(5'phosphoribosyl) anthranilate isomerase (PRAI)|Ribulose-phosphate binding barrel GO:0003824|GO:0004640|GO:0006568 G3DSA:3.20.20.70|MF_00135|PF00697|SSF51366 Alide2_1302 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001406|IPR020095|IPR020097|IPR020103 Pseudouridine synthase I, TruA|Pseudouridine synthase I, TruA, C-terminal|Pseudouridine synthase I, TruA, alpha/beta domain|Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.70.580|G3DSA:3.30.70.660|MF_00171|PF01416|PIRSF001430|SSF55120|TIGR00071 Alide2_1303 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020011|IPR020012|IPR038440 FimV, C-terminal domain superfamily|Motility protein FimV, C-terminal|Motility protein FimV, N-terminal G3DSA:1.20.58.2200|TIGR03504|TIGR03505 Alide2_1304 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000319|IPR000534|IPR011534|IPR012080|IPR012280|IPR036291 Aspartate-semialdehyde dehydrogenase|Aspartate-semialdehyde dehydrogenase, conserved site|Aspartate-semialdehyde dehydrogenase, gamma-type|NAD(P)-binding domain superfamily|Semialdehyde dehydrogenase, NAD-binding|Semialdehyde dehydrogenase, dimerisation domain GO:0004073|GO:0005737|GO:0006520|GO:0008652|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0016620|GO:0046983|GO:0050661|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_02121|PF01118|PF02774|PIRSF000148|PS01103|SM00859|SSF51735|SSF55347|TIGR01745 Alide2_1305 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004429|IPR019818|IPR024084 Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase|Isopropylmalate dehydrogenase-like domain GO:0000287|GO:0003862|GO:0005737|GO:0009098|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|MF_01033|PF00180|PS00470|SM01329|SSF53659|TIGR00169 Alide2_1306 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000573|IPR004431|IPR015928 3-isopropylmalate dehydratase, small subunit|Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase, swivel GO:0003861|GO:0009098|GO:0009316 G3DSA:3.20.19.10|MF_01031|PF00694|SSF52016|TIGR00171 Alide2_1307 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012556 Entericidin A/B GO:0009636|GO:0016020 PF08085 Alide2_1308 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001030|IPR004430|IPR015931|IPR018136|IPR036008 3-isopropylmalate dehydratase, large subunit|Aconitase family, 4Fe-4S cluster binding site|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0003861|GO:0009098|GO:0051539 G3DSA:3.30.499.10|G3DSA:3.30.499.20|MF_01026|PF00330|PR00415|PS00450|PS01244|SSF53732|TIGR00170 Alide2_1309 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_1310 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR011108|IPR022712|IPR036866 Beta-Casp domain|Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like|Zn-dependent metallo-hydrolase, RNA specificity domain G3DSA:3.40.50.10890|G3DSA:3.60.15.10|PF00753|PF07521|PF10996|SM00849|SM01027|SSF56281 Alide2_1311 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001128|IPR002397|IPR036396 Cytochrome P450|Cytochrome P450 superfamily|Cytochrome P450, B-class GO:0005506|GO:0016705|GO:0020037|GO:0055114 G3DSA:1.10.630.10|PF00067|PR00359|SSF48264 Alide2_1312 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002830 UbiD decarboxylyase family GO:0016831 G3DSA:1.20.5.570|G3DSA:3.40.1670.10|PF01977|SSF143968|SSF50475|TIGR00148 Alide2_1313 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003382|IPR004507|IPR036551 Flavin prenyltransferase UbiX-like|Flavin prenyltransferase-like|Flavoprotein GO:0003824 G3DSA:3.40.50.1950|MF_01984|PF02441|SSF52507|TIGR00421 Alide2_1314 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014958 DGC PF08859|PIRSF037181 Alide2_1315 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003033|IPR036527 SCP2 sterol-binding domain|SCP2 sterol-binding domain superfamily G3DSA:3.30.1050.10|PF02036|SSF55718 Alide2_1316 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001539 Peptidase U32 GO:0006508|GO:0008233 PF01136 Alide2_1317 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001539 Peptidase U32 GO:0006508|GO:0008233 PF01136|PS01276 Alide2_1318 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001597|IPR011166|IPR015421|IPR015422|IPR015424|IPR018176 Aromatic amino acid beta-eliminating lyase/threonine aldolase|Beta-eliminating lyase family|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Tryptophanase, conserved site GO:0003824|GO:0006520|GO:0009072|GO:0016829|GO:0016830 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01212|PIRSF001386|PS00853|SSF53383 Alide2_1319 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013424 PEP-CTERM protein-sorting domain PF07589|TIGR02595 Alide2_1320 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001305|IPR001623|IPR002939|IPR008971|IPR012724|IPR018253|IPR036410|IPR036869 Chaperone DnaJ|Chaperone DnaJ, C-terminal|Chaperone J-domain superfamily|DnaJ domain|DnaJ domain, conserved site|HSP40/DnaJ peptide-binding|Heat shock protein DnaJ, cysteine-rich domain|Heat shock protein DnaJ, cysteine-rich domain superfamily GO:0005524|GO:0006457|GO:0009408|GO:0031072|GO:0051082 G3DSA:1.10.287.110|G3DSA:2.10.230.10|G3DSA:2.60.260.20|MF_01152|PF00226|PF00684|PF01556|PR00625|PS00636|SM00271|SSF46565|SSF49493|SSF57938|TIGR02349 Alide2_1321 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012725|IPR013126|IPR018181|IPR029047|IPR029048 Chaperone DnaK|Heat shock protein 70 family|Heat shock protein 70, conserved site|Heat shock protein 70kD, C-terminal domain superfamily|Heat shock protein 70kD, peptide-binding domain superfamily GO:0005524|GO:0006457|GO:0051082 G3DSA:1.20.1270.10|G3DSA:2.60.34.10|G3DSA:3.30.420.40|G3DSA:3.90.640.10|MF_00332|PF00012|PR00301|PS00297|PS00329|PS01036|SSF100920|SSF100934|SSF53067|TIGR02350 Alide2_1322 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000740|IPR009012|IPR013805 GrpE nucleotide exchange factor|GrpE nucleotide exchange factor, coiled-coil|GrpE nucleotide exchange factor, head GO:0000774|GO:0006457|GO:0042803|GO:0051087 G3DSA:2.30.22.10|G3DSA:3.90.20.20|MF_01151|PF01025|PR00773|PS01071|SSF51064|SSF58014 Alide2_1323 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000529|IPR014717|IPR020814|IPR020815|IPR035980 Ribosomal protein S6|Ribosomal protein S6 superfamily|Ribosomal protein S6, conserved site|Ribosomal protein S6, plastid/chloroplast|Translation elongation factor EF1B/ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.30.70.60|MF_00360|PF01250|PS01048|SSF54995|TIGR00166 Alide2_1324 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012340|IPR023646 Nucleic acid-binding, OB-fold|Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 G3DSA:2.40.50.140|MF_00720|PIRSF003135|SSF50249|TIGR04418 Alide2_1325 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001648|IPR036870 Ribosomal protein S18|Ribosomal protein S18 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:4.10.640.10|MF_00270|PD002239|PF01084|PR00974|SSF46911|TIGR00165 Alide2_1326 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009027|IPR020069|IPR020070|IPR020594|IPR036791|IPR036935 Ribosomal protein L9, C-terminal|Ribosomal protein L9, C-terminal domain superfamily|Ribosomal protein L9, N-terminal|Ribosomal protein L9, N-terminal domain superfamily|Ribosomal protein L9, bacteria/chloroplast|Ribosomal protein L9/RNase H1, N-terminal GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.10.430.100|G3DSA:3.40.5.10|MF_00503|PF01281|PF03948|PS00651|SSF55653|SSF55658|TIGR00158 Alide2_1327 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR007692|IPR007693|IPR007694|IPR016136|IPR027417|IPR036185 AAA+ ATPase domain|DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal|DNA helicase, DnaB type|DNA helicase, DnaB-like, C-terminal|DNA helicase, DnaB-like, N-terminal|DNA helicase, DnaB-like, N-terminal domain superfamily|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003678|GO:0005524|GO:0006260 G3DSA:1.10.860.10|G3DSA:3.40.50.300|PF00772|PF03796|SM00382|SSF48024|SSF52540|TIGR00665 Alide2_1328 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|SSF53720 Alide2_1329 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002716|IPR003714|IPR027417|IPR029060 P-loop containing nucleoside triphosphate hydrolase|PIN domain|PIN-like domain superfamily|PhoH-like protein GO:0005524 G3DSA:3.40.50.1010|G3DSA:3.40.50.300|PF02562|PF13638|SM00670|SSF52540|SSF88723 Alide2_1330 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000866|IPR024706|IPR036249 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Thioredoxin-like superfamily GO:0016209|GO:0016491|GO:0055114 G3DSA:3.40.30.10|PF00578|PIRSF000239|SSF52833 Alide2_1331 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024513|IPR028976 CheC-like superfamily|Protein of unknown function DUF3334 G3DSA:3.40.1550.10|PF11813|SSF103039 Alide2_1332 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 PF01292|SSF81342 Alide2_1333 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007372|IPR036761 Lipid/polyisoprenoid-binding, YceI-like|Lipid/polyisoprenoid-binding, YceI-like superfamily G3DSA:2.40.128.110|PF04264|SM00867|SSF101874 Alide2_1334 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007372|IPR036761 Lipid/polyisoprenoid-binding, YceI-like|Lipid/polyisoprenoid-binding, YceI-like superfamily G3DSA:2.40.128.110|PF04264|SM00867|SSF101874 Alide2_1335 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002505|IPR012188|IPR012301|IPR012302|IPR036291|IPR037062 Malic enzyme, N-terminal domain|Malic enzyme, N-terminal domain superfamily|Malic enzyme, NAD-binding|NAD(P)-binding domain superfamily|NAD(P)-dependent malic enzyme|Phosphate acetyl/butaryl transferase GO:0004470|GO:0004471|GO:0006108|GO:0016746|GO:0046872|GO:0051287|GO:0055114 G3DSA:3.40.50.10380|G3DSA:3.40.50.10750|G3DSA:3.40.50.10950|G3DSA:3.40.50.720|PF00390|PF01515|PF03949|PIRSF036684|SM00919|SM01274|SSF51735|SSF53223|SSF53659 Alide2_1336 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006042|IPR006043 Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0016020|GO:0022857|GO:0055085 PF00860|TIGR00801 Alide2_1337 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004089|IPR004090 Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|PF00015|PR00260|SM00283|SSF58104 Alide2_1339 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001261|IPR002933|IPR011650|IPR036264 ArgE/DapE/ACY1/CPG2/YscS, conserved site|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0006508|GO:0008237|GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PS00758|SSF53187|SSF55031 Alide2_1340 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR010158|IPR017580|IPR018020|IPR036264|IPR036778 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1|Amidase, carbamoylase-type|Bacterial exopeptidase dimerisation domain|Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase|Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily|Peptidase M20 GO:0016787|GO:0016813|GO:0019428 G3DSA:1.10.3330.10|G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF09349|SSF158694|SSF53187|SSF55031|TIGR01879|TIGR03164 Alide2_1341 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002509|IPR011330|IPR017625 Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain|PuuE allantoinase/chitin deacetylase 1 GO:0003824|GO:0005975|GO:0016810 G3DSA:3.20.20.370|PF01522|SSF88713|TIGR03212 Alide2_1342 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 Alide2_1343 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_1344 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011829|IPR019818|IPR024084 Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain|Tartrate dehydrogenase GO:0000287|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|PF00180|PS00470|SM01329|SSF53659|TIGR02089 Alide2_1345 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1346 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007835|IPR025286|IPR037035|IPR038614 Glycerate kinase, N-terminal domain superfamily|Glycerate kinase-like, C-terminal domain superfamily|MOFRL domain|MOFRL-associated domain G3DSA:3.40.1480.10|G3DSA:3.40.50.10180|PF05161|PF13660|SSF82544 Alide2_1347 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1348 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005814|IPR015421|IPR015422|IPR015424 Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0008483|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00202|PIRSF000521|PS00600|SSF53383 Alide2_1349 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 Alide2_1350 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_1351 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006397|IPR011766|IPR012000|IPR012001|IPR029035|IPR029061 DHS-like NAD/FAD-binding domain superfamily|Glyoxylate carboligase|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0009028|GO:0009436|GO:0030976 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|SSF52467|SSF52518|TIGR01504 Alide2_1352 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013022|IPR017643|IPR026040|IPR036237 Hydroxypyruvate isomerase|Hydroxypyruvate isomerase-like|Xylose isomerase-like superfamily|Xylose isomerase-like, TIM barrel domain G3DSA:3.20.20.150|PF01261|PIRSF006241|SSF51658|TIGR03234 Alide2_1353 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006115|IPR006398|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 2-hydroxy-3-oxopropionate reductase|3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0008679|GO:0016491|GO:0046487|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|SSF48179|SSF51735|TIGR01505 Alide2_1356 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000101|IPR029055 Gamma-glutamyltranspeptidase|Nucleophile aminohydrolases, N-terminal GO:0006751|GO:0036374 G3DSA:1.10.246.130|G3DSA:3.60.20.40|PF01019|PR01210|PS00462|SSF56235|TIGR00066 Alide2_1357 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000895|IPR014306|IPR023416|IPR023418|IPR023419|IPR036817 Hydroxyisourate hydrolase|Transthyretin, conserved site|Transthyretin, thyroxine binding site|Transthyretin/hydroxyisourate hydrolase|Transthyretin/hydroxyisourate hydrolase domain|Transthyretin/hydroxyisourate hydrolase domain superfamily GO:0006144|GO:0033971 G3DSA:2.60.40.180|PF00576|PR00189|PS00768|PS00769|SSF49472|TIGR02962 Alide2_1358 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.30.1150.10 Alide2_1359 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003777|IPR014308|IPR027051 Xanthine dehydrogenase accessory protein XdhC|XdhC Rossmann domain|XdhC- CoxI G3DSA:3.40.50.720|PF02625|PF13478|TIGR02964 Alide2_1360 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010389|IPR036909 Cytochrome c-like domain superfamily|Urate oxidase N-terminal GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF06181|SSF46626 Alide2_1361 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011962|IPR029054|IPR036157 dCTP deaminase|dUTPase-like|dUTPase-like superfamily GO:0006229|GO:0008829 G3DSA:2.70.40.10|MF_00146|PF00692|SSF51283|TIGR02274 Alide2_1362 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007343 Uncharacterised protein family, zinc metallopeptidase putative PF04228|SSF55486 Alide2_1363 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000629|IPR001650|IPR011545|IPR014001|IPR027417 ATP-dependent RNA helicase DEAD-box, conserved site|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0005524 G3DSA:3.40.50.300|PF00270|PF00271|PS00039|SM00487|SM00490|SSF52540 Alide2_1364 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008719 Nitrous oxide reductase accessory protein NosL G3DSA:3.30.70.2050|PF05573|SSF160387 Alide2_1365 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008719 Nitrous oxide reductase accessory protein NosL G3DSA:3.30.70.2050|G3DSA:3.30.70.2060|PF05573|SSF160387 Alide2_1366 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032688 ABC-2 family transporter protein GO:0055085 PF12679 Alide2_1367 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_1368 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006626|IPR006633|IPR007742|IPR011050|IPR012334|IPR022441|IPR026464 Carbohydrate-binding/sugar hydrolysis domain|Nitrous oxide reductase family maturation protein NosD|Parallel beta-helix repeat|Parallel beta-helix repeat-2|Pectin lyase fold|Pectin lyase fold/virulence factor|Periplasmic copper-binding protein NosD, beta helix domain G3DSA:2.160.20.10|PF05048|SM00710|SM00722|SSF51126|TIGR03804|TIGR04247 Alide2_1369 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007329|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|FMN-binding GO:0010181|GO:0016020 PF04205|PF12801|PS00198|SM00900|SSF54862 Alide2_1370 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008972|IPR011045|IPR015943|IPR023644|IPR028096 Cupredoxin|EfeO-type cupredoxin-like domain|Nitrous oxide reductase, N-terminal|Nitrous-oxide reductase|WD40/YVTN repeat-like-containing domain superfamily GO:0005507|GO:0005509|GO:0005515|GO:0050304|GO:0055114 G3DSA:2.130.10.10|G3DSA:2.60.40.420|PF13473|SSF49503|SSF50974|TIGR04244 Alide2_1372 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002323|IPR009056|IPR036909 Cytochrome c, class IE|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0005506|GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|PR00607|SSF46626 Alide2_1373 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003374|IPR024932 ApbE-like superfamily|Flavin transferase ApbE GO:0017013 G3DSA:3.10.520.20|PF02424|PIRSF006268|SSF143631 Alide2_1374 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004617|IPR004843|IPR029052 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)|Calcineurin-like phosphoesterase domain, ApaH type|Metallo-dependent phosphatase-like GO:0008803|GO:0016787 G3DSA:3.60.21.10|MF_00199|PF00149|PIRSF000903|SSF56300|TIGR00668 Alide2_1375 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001801|IPR027444 Histone-like protein H-NS|Histone-like protein H-NS, C-terminal domain GO:0003677|GO:0005622|GO:0006355 G3DSA:3.30.160.420|PF00816|SM00528|SSF81273 Alide2_1376 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000573|IPR001030|IPR015928|IPR015931|IPR018136|IPR036008 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase family, 4Fe-4S cluster binding site|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase, swivel G3DSA:1.10.1440.20|G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.30.499.20|PF00330|PF00694|PR00415|PS00450|PS01244|SSF52016|SSF53732 Alide2_1377 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002938|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily GO:0071949 G3DSA:3.30.9.30|G3DSA:3.50.50.60|PF01494|PR00420|SSF51905|SSF54373 Alide2_1378 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_1379 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_1380 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR007492|IPR011006 CheY-like superfamily|LytTR DNA-binding domain|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677 G3DSA:2.40.50.40|G3DSA:3.40.50.2300|PF00072|PF04397|SM00448|SM00850|SSF52172 Alide2_1381 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010559|IPR036890 Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 G3DSA:3.30.565.10|PF06580|SSF55874 Alide2_1382 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025698 2TM domain PF13239 Alide2_1384 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 MF_01006|PF02673|TIGR00753 Alide2_1385 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 Alide2_1386 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_1387 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 Alide2_1388 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 Alide2_1389 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_1390 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000432|IPR005748|IPR007695|IPR007696|IPR007860|IPR007861|IPR016151|IPR017261|IPR027417|IPR036187|IPR036678 DNA mismatch repair protein MutS|DNA mismatch repair protein MutS, C-terminal|DNA mismatch repair protein MutS, N-terminal|DNA mismatch repair protein MutS, clamp|DNA mismatch repair protein MutS, connector domain|DNA mismatch repair protein MutS, core|DNA mismatch repair protein MutS, core domain superfamily|DNA mismatch repair protein MutS-like, N-terminal|DNA mismatch repair protein MutS/MSH|MutS, connector domain superfamily|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0006298|GO:0030983 G3DSA:1.10.1420.10|G3DSA:3.30.420.110|G3DSA:3.40.1170.10|G3DSA:3.40.50.300|MF_00096|PF00488|PF01624|PF05188|PF05190|PF05192|PIRSF037677|PS00486|SM00533|SM00534|SSF48334|SSF52540|SSF53150|SSF55271|TIGR01070 Alide2_1391 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|SSF46689 Alide2_1392 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 Alide2_1396 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1397 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000262|IPR008259|IPR012133|IPR013785 Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent alpha-hydroxy acid dehydrogenase, active site|FMN-dependent dehydrogenase GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|PF01070|PIRSF000138|PS00557|SSF51395 Alide2_1398 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_1399 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008963|IPR018946|IPR032093|IPR038607 Alkaline phosphatase D-related|PhoD-like superfamily|Phospholipase D, N-terminal|Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 G3DSA:2.60.40.380|G3DSA:3.60.21.70|PF09423|PF16655|SSF56300 Alide2_1400 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 Alide2_1401 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002828|IPR030048|IPR036523 SurE-like phosphatase/nucleotidase superfamily|Survival protein SurE|Survival protein SurE-like phosphatase/nucleotidase GO:0008252|GO:0016787 G3DSA:3.40.1210.10|MF_00060|PF01975|SSF64167|TIGR00087 Alide2_1402 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000682|IPR029063 Protein-L-isoaspartate(D-aspartate) O-methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0004719|GO:0006464 G3DSA:3.40.50.150|PF01135|SSF53335|TIGR00080 Alide2_1403 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011055|IPR016047|IPR018392|IPR036779 Duplicated hybrid motif|LysM domain|LysM domain superfamily|Peptidase M23 G3DSA:2.70.70.10|G3DSA:3.10.350.10|PF01476|PF01551|SM00257|SSF51261 Alide2_1404 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002942|IPR006145|IPR006224|IPR006225|IPR020103|IPR036986 Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF00849|PF01479|PS01129|SM00363|SSF55120|SSF55174|TIGR00005 Alide2_1405 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005234|IPR036388|IPR036390 Chromosome segregation/condensation protein ScpB|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0051304 G3DSA:1.10.10.10|PF04079|PIRSF019345|SSF46785|TIGR00281 Alide2_1406 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000748|IPR002942|IPR006145|IPR018496|IPR020103|IPR036986 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.10.290.10|G3DSA:3.30.70.1560|G3DSA:3.30.70.580|PF00849|PF01479|PS01149|SM00363|SSF55120|SSF55174|TIGR00093 Alide2_1407 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001564|IPR034907|IPR036850 Nucleoside diphosphate kinase|Nucleoside diphosphate kinase-like domain|Nucleoside diphosphate kinase-like domain superfamily GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 G3DSA:3.30.70.141|MF_00451|PF00334|PR01243|SM00562|SSF54919 Alide2_1408 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004383|IPR007197|IPR013785|IPR027492 Aldolase-type TIM barrel|Dual-specificity RNA methyltransferase RlmN|Radical SAM|Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0003824|GO:0005737|GO:0006364|GO:0008173|GO:0030488|GO:0051536|GO:0070475 G3DSA:1.10.150.530|G3DSA:3.20.20.70|MF_01849|PF04055|PIRSF006004|SSF102114|TIGR00048 Alide2_1409 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990|IPR013360|IPR019734 Pilus biogenesis/stability type IV, PilW|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|PF13432|PF14559|SM00028|SSF48452|TIGR02521 Alide2_1410 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025194 Domain of unknown function DUF4115 G3DSA:1.10.260.40|PF13413|PF13464 Alide2_1411 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004588|IPR011005|IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type|Dihydropteroate synthase-like GO:0005506|GO:0008299|GO:0016114|GO:0044237|GO:0046429|GO:0055114 G3DSA:3.20.20.20|G3DSA:3.30.413.10|MF_00159|PF04551|PIRSF004640|SSF56014|TIGR00612 Alide2_1412 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004154|IPR004516|IPR015807|IPR036621 Anticodon-binding|Anticodon-binding domain superfamily|Histidine-tRNA ligase|Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0004821|GO:0005524|GO:0005737|GO:0006427 G3DSA:3.30.930.10|G3DSA:3.40.50.800|MF_00127|PF03129|PF13393|PIRSF001549|SSF52954|SSF55681|TIGR00442 Alide2_1413 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018704|IPR026039 Tetratricopeptide repeat-like domain|Uncharacterised protein family UPF0070 PF09976|PIRSF006170 Alide2_1414 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002372|IPR011047|IPR015943|IPR017687|IPR018391 Outer membrane protein assembly factor BamB|Pyrrolo-quinoline quinone beta-propeller repeat|Pyrrolo-quinoline quinone repeat|Quinoprotein alcohol dehydrogenase-like superfamily|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|MF_00923|PF13360|SM00564|SSF50998|TIGR03300 Alide2_1415 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005225|IPR006073|IPR015946|IPR016484|IPR027417|IPR032859 GTP binding domain|GTP-binding protein EngA|GTPase Der, C-terminal KH-domain-like|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain GO:0005525 G3DSA:3.30.300.20|G3DSA:3.40.50.300|MF_00195|PF01926|PF14714|PIRSF006485|PR00326|SSF52540|TIGR00231|TIGR03594 Alide2_1416 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005001|IPR010920 LSM domain superfamily|RNA-binding protein Hfq GO:0003723|GO:0006355 G3DSA:2.30.30.100|MF_00436|PF17209|SSF50182|TIGR02383 Alide2_1417 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006073|IPR016496|IPR025121|IPR027417|IPR032305 GTP binding domain|GTP-binding protein, middle domain|GTPase HflX|GTPase HflX, N-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:3.40.50.11060|G3DSA:3.40.50.300|MF_00900|PF01926|PF13167|PF16360|PIRSF006809|PR00326|SSF52540|TIGR03156 Alide2_1418 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001107|IPR010201|IPR020980|IPR036013 Band 7 domain|Band 7/SPFH domain superfamily|HflK|Menbrane protein HflK, N-terminal GO:0016021 G3DSA:3.30.479.30|PF01145|PF12221|SM00244|SSF117892|TIGR01933 Alide2_1419 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001107|IPR010200|IPR036013 Band 7 domain|Band 7/SPFH domain superfamily|HflC GO:0016021|GO:0052547 G3DSA:3.30.479.30|PF01145|PIRSF005651|SM00244|SSF117892|TIGR01932 Alide2_1420 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019201 Protein of unknown function DUF2065 PF09838 Alide2_1421 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004516|IPR004517 ATP phosphoribosyltransferase regulatory subunit|Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 G3DSA:3.30.930.10|MF_00125|PF13393|PIRSF001549|SSF55681 Alide2_1422 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001114|IPR018220|IPR027417|IPR033128 Adenylosuccinate synthase, active site|Adenylosuccinate synthase, GTP-binding site|Adenylosuccinate synthetase|P-loop containing nucleoside triphosphate hydrolase GO:0004019|GO:0005525|GO:0006164 G3DSA:1.10.300.10|G3DSA:3.40.440.10|G3DSA:3.90.170.10|MF_00011|PF00709|PS00513|PS01266|SM00788|SSF52540|TIGR00184 Alide2_1423 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271 Alide2_1424 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000748|IPR006145|IPR018496|IPR020103 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.30.70.1560|G3DSA:3.30.70.580|PF00849|PS01149|SSF55120|SSF55174|TIGR00093 Alide2_1425 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011045|IPR015943 Nitrous oxide reductase, N-terminal|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|PF02239|SSF50974 Alide2_1426 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002509|IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain GO:0003824|GO:0005975|GO:0016810 G3DSA:3.20.20.370|PF01522|SSF88713 Alide2_1427 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 PF04116 Alide2_1428 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF07264 Alide2_1429 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001453|IPR036425 MoaB/Mog domain|MoaB/Mog-like domain superfamily G3DSA:3.40.980.10|PF00994|SM00852|SSF53218 Alide2_1430 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004809|IPR008146|IPR008147|IPR014746|IPR027302|IPR027303|IPR036651 Glutamine synthetase type I|Glutamine synthetase, N-terminal conserved site|Glutamine synthetase, N-terminal domain superfamily|Glutamine synthetase, beta-Grasp domain|Glutamine synthetase, catalytic domain|Glutamine synthetase, glycine-rich site|Glutamine synthetase/guanido kinase, catalytic domain GO:0003824|GO:0004356|GO:0005737|GO:0006542|GO:0006807|GO:0009399 G3DSA:3.10.20.70|G3DSA:3.30.590.10|PF00120|PF03951|PS00180|PS00181|SM01230|SSF54368|SSF55931|TIGR00653 Alide2_1432 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55785|SSF55874 Alide2_1433 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR010114|IPR011006|IPR025662|IPR025943|IPR025944|IPR027417 AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain, Fis-type|DNA-binding transcriptional regulator NtrC|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, receiver domain GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0006808|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PR01590|PS00675|PS00676|PS00688|SM00382|SM00448|SSF46689|SSF52172|SSF52540|TIGR01818 Alide2_1434 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004808|IPR005135|IPR020848|IPR036691 AP endonuclease 1|AP endonuclease 1, conserved site|Endonuclease/exonuclease/phosphatase|Endonuclease/exonuclease/phosphatase superfamily GO:0003677|GO:0004518|GO:0004519|GO:0005622|GO:0006281 G3DSA:3.60.10.10|PF03372|PS00728|SSF56219|TIGR00195|TIGR00633 Alide2_1436 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 MF_00275|PF03814|PIRSF001294|TIGR00680 Alide2_1437 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR006391|IPR008250|IPR018303|IPR023298|IPR023299|IPR036412 HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, B chain, subfamily IA|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0005524|GO:0006813|GO:0008556|GO:0016021 G3DSA:2.70.150.20|G3DSA:3.40.1110.10|MF_00285|PF00122|PF00702|PR00119|PS00154|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01497 Alide2_1438 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 MF_00276|PF02669|PIRSF001296|TIGR00681 Alide2_1439 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR003852|IPR004358|IPR006016|IPR014729|IPR025201|IPR027417|IPR029016|IPR036097|IPR036890|IPR038318 GAF-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|KdpD, transmembrane domain superfamily|P-loop containing nucleoside triphosphate hydrolase|Rossmann-like alpha/beta/alpha sandwich fold|Sensor protein KdpD, transmembrane domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal|Signal transduction histidine kinase-related protein, C-terminal|UspA GO:0000155|GO:0000160|GO:0004673|GO:0007165|GO:0016020|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:1.20.120.620|G3DSA:3.30.450.40|G3DSA:3.30.565.10|G3DSA:3.40.50.300|G3DSA:3.40.50.620|PF00512|PF00582|PF02518|PF02702|PF13493|PR00344|SM00387|SM00388|SSF47384|SSF52402|SSF52540|SSF55874 Alide2_1440 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 Alide2_1441 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025161 Putative transposase IS4/IS5 family PF13340 Alide2_1442 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609 Alide2_1443 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021783 Protein of unknown function DUF3348 PF11828 Alide2_1444 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006665|IPR008520|IPR036737 Domain of unknown function DUF802|OmpA-like domain|OmpA-like domain superfamily G3DSA:3.30.1330.60|PF00691|PF05650|SSF103088 Alide2_1446 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001796|IPR012259|IPR017925|IPR024072 Dihydrofolate reductase|Dihydrofolate reductase conserved site|Dihydrofolate reductase domain|Dihydrofolate reductase-like domain superfamily GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 G3DSA:3.40.430.10|PF00186|PIRSF000194|PR00070|PS00075|SSF53597 Alide2_1447 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000398|IPR020940|IPR023451|IPR036926 Thymidylate synthase|Thymidylate synthase, active site|Thymidylate synthase/dCMP hydroxymethylase domain|Thymidylate synthase/dCMP hydroxymethylase superfamily GO:0004799|GO:0006231 G3DSA:3.30.572.10|MF_00008|PF00303|PR00108|PS00091|SSF55831|TIGR03284 Alide2_1448 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004113|IPR006094|IPR016164|IPR016167|IPR016169|IPR016171|IPR036318 FAD linked oxidase, N-terminal|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2 GO:0003824|GO:0016491|GO:0050660|GO:0055114 G3DSA:1.10.45.10|G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.30.70.2190|G3DSA:3.30.70.2740|PF01565|PF02913|SSF55103|SSF56176 Alide2_1449 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018643 Protein of unknown function DUF2069, membrane PF09842 Alide2_1450 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017039|IPR023679 Uncharacterised protein family UPF0761, bacterial|Virulence factor BrkB MF_00672|PF03631|TIGR00765 Alide2_1451 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021296|IPR021871 Protein of unknown function DUF2868|Protein of unknown function DUF3482 PF11067|PF11981 Alide2_1452 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002937|IPR017830|IPR036188 Amine oxidase|FAD/NAD(P)-binding domain superfamily|Hydroxysqualene dehydroxylase HpnE GO:0016491|GO:0055114 G3DSA:3.50.50.60|G3DSA:3.90.660.10|PF01593|SSF51905|TIGR03467 Alide2_1453 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003122|IPR003660|IPR004089|IPR004090 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor Tar-related, ligand-binding|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF02203|PR00260|SM00283|SM00304|SSF58104 Alide2_1454 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008949|IPR017828|IPR019845 Isoprenoid synthase domain superfamily|Squalene synthase HpnD-like|Squalene/phytoene synthase, conserved site GO:0016117|GO:0016765|GO:0016767 G3DSA:1.10.600.10|PF00494|PS01045|SSF48576|TIGR03465 Alide2_1455 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008949|IPR017827 Hydroxysqualene synthase HpnC|Isoprenoid synthase domain superfamily G3DSA:1.10.600.10|PF00494|SSF48576|TIGR03464 Alide2_1456 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_1457 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 Alide2_1458 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001179|IPR005215|IPR008880|IPR008881|IPR027304|IPR036611|IPR037041 FKBP-type peptidyl-prolyl cis-trans isomerase domain|Trigger factor|Trigger factor ribosome-binding domain superfamily|Trigger factor, C-terminal|Trigger factor, C-terminal domain superfamily|Trigger factor, ribosome-binding, bacterial|Trigger factor/SurA domain superfamily GO:0006457|GO:0015031 G3DSA:1.10.3120.10|G3DSA:3.10.50.40|G3DSA:3.30.70.1050|MF_00303|PF00254|PF05697|PF05698|PIRSF003095|SSF102735|SSF109998|SSF54534|TIGR00115 Alide2_1459 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001907|IPR023562|IPR029045 ATP-dependent Clp protease proteolytic subunit|Clp protease proteolytic subunit /Translocation-enhancing protein TepA|ClpP/crotonase-like domain superfamily GO:0004252|GO:0006508 G3DSA:3.90.226.10|MF_00444|PF00574|PR00127|SSF52096|TIGR00493 Alide2_1460 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR003959|IPR004487|IPR010603|IPR019489|IPR027417|IPR038366 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp protease, ATP-binding subunit ClpX|P-loop containing nucleoside triphosphate hydrolase|Zinc finger, ClpX C4-type|Zinc finger, ClpX C4-type superfamily GO:0005524|GO:0006457|GO:0008270|GO:0046983|GO:0051082 G3DSA:1.10.8.60|G3DSA:3.30.50.30|G3DSA:3.40.50.300|MF_00175|PF06689|PF07724|PF10431|SM00382|SM00994|SM01086|SSF52540|SSF57716|TIGR00382 Alide2_1461 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003111|IPR003593|IPR003959|IPR004815|IPR008268|IPR008269|IPR014721|IPR015947|IPR020568|IPR027417|IPR027543 AAA+ ATPase domain|ATPase, AAA-type, core|Lon protease, bacterial|Lon protease, bacterial/eukaryotic-type|Lon, substrate-binding domain|P-loop containing nucleoside triphosphate hydrolase|PUA-like superfamily|Peptidase S16, Lon proteolytic domain|Peptidase S16, active site|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 G3DSA:1.10.8.60|G3DSA:1.20.58.1480|G3DSA:2.30.130.40|G3DSA:3.30.230.10|G3DSA:3.40.50.300|MF_01973|PF00004|PF02190|PF05362|PIRSF001174|PR00830|PS01046|SM00382|SM00464|SSF52540|SSF54211|SSF88697|TIGR00763 Alide2_1462 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR023772|IPR036271 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|PS01081|SSF46689|SSF48498 Alide2_1463 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR011206|IPR015813 Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|PIRSF015582|SSF51621 Alide2_1464 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 Alide2_1465 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|SSF47203|SSF56645 Alide2_1466 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1467 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1468 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1469 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011944|IPR032710|IPR037401 NTF2-like domain superfamily|SnoaL-like domain|Steroid delta5-4-isomerase G3DSA:3.10.450.50|PF13474|SSF54427|TIGR02246 Alide2_1470 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000415|IPR029479 Nitroreductase|Nitroreductase-like GO:0016491 G3DSA:3.40.109.10|PF00881|SSF55469 Alide2_1471 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_1472 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_1473 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_1474 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_1475 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_1476 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_1477 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001155|IPR013785|IPR023753|IPR036188 Aldolase-type TIM barrel|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0003824|GO:0010181|GO:0016491|GO:0055114 G3DSA:3.20.20.70|G3DSA:3.40.50.720|G3DSA:3.50.50.60|PF00724|PF07992|PR00411|SSF51395|SSF51905 Alide2_1478 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SSF51735 Alide2_1479 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|PF03972|SSF103378 Alide2_1480 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1481 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1483 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1484 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029069 HotDog domain superfamily G3DSA:3.10.129.10|SSF54637 Alide2_1486 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1487 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1488 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1489 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00737|SSF53901 Alide2_1491 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010839 Acyclic terpene utilisation PF07287 Alide2_1492 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 Alide2_1493 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_1495 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SM00822|SSF51735 Alide2_1496 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_1497 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1498 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1499 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_1501 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000172|IPR007867|IPR012132|IPR027424|IPR036188 FAD/NAD(P)-binding domain superfamily|Glucose Oxidase, domain 2|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 G3DSA:1.10.1220.110|G3DSA:3.30.410.40|G3DSA:3.50.50.60|G3DSA:4.10.450.10|PF00732|PF05199|PIRSF000137|PS00623|PS00624|SSF51905|SSF54373 Alide2_1502 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1503 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021312 Protein of unknown function DUF2889 PF11136 Alide2_1504 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|G3DSA:3.30.1330.120|PF03972|SSF103378 Alide2_1505 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_1506 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_1507 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR000639|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like GO:0003824 G3DSA:3.40.50.1820|PF12697|PR00111|PR00412|SSF53474 Alide2_1508 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 Alide2_1509 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069|IPR039569 HotDog domain superfamily|MaoC-like dehydratase domain|N-terminal of MaoC-like dehydratase G3DSA:3.10.129.10|PF01575|PF13452|SSF54637 Alide2_1510 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_1511 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|SSF53901|TIGR01930 Alide2_1512 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110|IPR032387 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetyl-coenzyme A synthetase, N-terminal domain GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PF16177|PS00455|SSF56801 Alide2_1513 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_1514 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1515 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|PF03972|SSF103378 Alide2_1516 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1517 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00073|SSF47203|SSF56645 Alide2_1518 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000049|IPR012255|IPR014729|IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055 G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|SM00893|SSF52402 Alide2_1519 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035 DHS-like NAD/FAD-binding domain superfamily|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|SM00893|SSF52402|SSF52467 Alide2_1520 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029069|IPR039569 HotDog domain superfamily|N-terminal of MaoC-like dehydratase G3DSA:3.10.129.10|PF13452|SSF54637 Alide2_1521 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1522 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR011206|IPR015813 Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|PIRSF015582|SSF51621 Alide2_1524 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_1525 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_1526 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_1527 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_1528 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 Alide2_1529 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002328|IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0008270|GO:0016491|GO:0055114 G3DSA:3.90.180.10|PF00107|PF08240|PS00059|SM00829|SSF50129|SSF51735 Alide2_1530 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|SSF53720 Alide2_1532 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1533 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|G3DSA:3.30.1330.120|PF03972|SSF103378 Alide2_1534 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720 Alide2_1535 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|SSF53720 Alide2_1536 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_1537 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010290|IPR036259 MFS transporter superfamily|Transmembrane secretion effector PF05977|SSF103473 Alide2_1538 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001702|IPR002299|IPR023614 Porin domain superfamily|Porin, Gram-negative type|Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 G3DSA:2.40.160.10|PF13609|PR00182|PR00184|SSF56935 Alide2_1539 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1540 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_1541 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_1542 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_1543 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_1544 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 Alide2_1545 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_1546 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_1547 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 Alide2_1548 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_1549 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001801|IPR027444 Histone-like protein H-NS|Histone-like protein H-NS, C-terminal domain GO:0003677|GO:0005622|GO:0006355 G3DSA:3.30.160.420|PF00816|SM00528|SSF81273 Alide2_1550 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_1551 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR024967|IPR036397 DNA-binding domain, IS481-type|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13011|SSF53098 Alide2_1552 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13245|SSF52540 Alide2_1554 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_1556 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002559|IPR008490 Transposase InsH, N-terminal|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|PF05598 Alide2_1557 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002559|IPR008490 Transposase InsH, N-terminal|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|PF05598 Alide2_1560 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR009057|IPR012337|IPR025246|IPR036397 Homeobox-like domain superfamily|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily|Transposase IS30-like HTH domain GO:0003676|GO:0003677|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13936|SSF46689|SSF53098 Alide2_1562 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018733 Protein of unknown function DUF2274 PF10038 Alide2_1563 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI G3DSA:1.10.1200.160|G3DSA:2.40.128.260|PF03743 Alide2_1564 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010258|IPR014142|IPR038161 Conjugal transfer, TrbG/VirB9/CagX|P-type conjugative transfer protein TrbG|VirB9/CagX/TrbG, C-terminal domain superfamily G3DSA:2.60.40.2500|PF03524|TIGR02775 Alide2_1565 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007430|IPR032710 Bacterial virulence protein VirB8|NTF2-like domain superfamily GO:0016020 G3DSA:3.10.450.230|PF04335|SSF54427 Alide2_1566 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007688|IPR014150 Conjugal transfer, TrbL|Plasmid conjugal transfer TrbL/VirB6 GO:0030255 PF04610|TIGR02783 Alide2_1568 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014147|IPR025415 Protein of unknown function DUF4141|Type IV conjugative transfer protein TrbJ PF13605|TIGR02780 Alide2_1569 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR018145|IPR027417 AAA+ ATPase domain|CagE, TrbE, VirB component of type IV transporter system, central domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF03135|SM00382|SSF52540 Alide2_1570 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007792|IPR016704 Conjugal transfer, TrbD|Type IV secretion system, VirB3 / TrbD / AvhB PD012561|PF05101|PIRSF017854 Alide2_1571 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 PF04956 Alide2_1572 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001482|IPR014149|IPR027417 Conjugative transfer, TrbB|P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein GO:0000746|GO:0005737 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|SSF52540|TIGR02782 Alide2_1573 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002145|IPR010985 Ribbon-helix-helix|Ribbon-helix-helix protein, CopG GO:0006355 PF01402|SSF47598 Alide2_1574 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003688|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 G3DSA:3.40.50.300|PF02534|SSF52540 Alide2_1576 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1577 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002938|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily GO:0071949 G3DSA:3.30.9.50|G3DSA:3.50.50.60|PF01494|PR00420|SSF51905 Alide2_1578 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_1579 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF12698 Alide2_1580 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF12698 Alide2_1581 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_1582 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.50.100|PF16576|SSF111369 Alide2_1583 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR015292|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Transcription regulator YbiH, C-terminal GO:0003677 G3DSA:1.10.357.10|PF00440|PF09209|PR00455|SSF46689|SSF48498 Alide2_1584 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029058 Alpha/Beta hydrolase fold G3DSA:3.40.50.1820|SSF53474 Alide2_1585 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021795 Protein of unknown function DUF3363 PF11843 Alide2_1587 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019533|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S26 G3DSA:2.10.109.10|PF10502|SSF51306 Alide2_1588 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021263 Protein of unknown function DUF2840 PF11000 Alide2_1589 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010985 Ribbon-helix-helix GO:0006355 SSF47598 Alide2_1590 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002586|IPR027417 CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF01656|PIRSF009320|SSF52540 Alide2_1591 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018777 Replication initiator protein A PF10134 Alide2_1592 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061 Putative DNA-binding domain superfamily PF12728|SSF46955 Alide2_1593 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018754 Protein of unknown function DUF2285 PF10074 Alide2_1594 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021341 Protein of unknown function DUF2958 PF11171 Alide2_1595 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_1596 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007948 Protein of unknown function DUF736 PF05284 Alide2_1597 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001845|IPR036388|IPR036390 HTH ArsR-type DNA-binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12840|PR00778|SM00418|SSF46785 Alide2_1598 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase G3DSA:3.10.180.10|SSF54593 Alide2_1599 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023485|IPR036196 Phosphotyrosine protein phosphatase I|Phosphotyrosine protein phosphatase I superfamily G3DSA:3.40.50.2300|PF01451|SM00226|SSF52788 Alide2_1600 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002657|IPR004706|IPR038770 Arsenical-resistance protein Acr3|Bile acid:sodium symporter/arsenical resistance protein Acr3|Sodium/solute symporter superfamily GO:0015103|GO:0015297|GO:0016020|GO:0016021 G3DSA:1.20.1530.20|PF01758|PIRSF005508|TIGR00832 Alide2_1601 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006659|IPR006660|IPR036249 Arsenate reductase|Arsenate reductase-like|Thioredoxin-like superfamily GO:0008794|GO:0055114 G3DSA:3.40.30.10|PF03960|SSF52833|TIGR00014 Alide2_1602 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005149|IPR036388|IPR036390 Transcription regulator PadR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF03551|SSF46785 Alide2_1603 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003370|IPR014047 Chromate transporter|Chromate transporter, long chain GO:0015109|GO:0015703 PF02417|PIRSF004810|TIGR00937 Alide2_1604 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016181 Acyl-CoA N-acyltransferase G3DSA:3.40.630.30|PF13527|SSF55729 Alide2_1605 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003115|IPR036086 ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily G3DSA:1.10.10.2830|G3DSA:3.90.1530.30|PF02195|SM00470|SSF109709|SSF110849 Alide2_1606 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026325 Protein of unknown function DUF932 PF06067 Alide2_1608 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021341 Protein of unknown function DUF2958 PF11171 Alide2_1609 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001405|IPR020891|IPR025657 RadC-like JAB domain|Uncharacterised protein family UPF0758|Uncharacterised protein family UPF0758, conserved site G3DSA:3.40.140.10|PF04002|PS01302|SSF102712|TIGR00608 Alide2_1610 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000157|IPR035897 Toll/interleukin-1 receptor homology (TIR) domain|Toll/interleukin-1 receptor homology (TIR) domain superfamily GO:0005515|GO:0007165 G3DSA:3.40.50.10140|PF13676|SSF52200 Alide2_1612 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015032|IPR036490 Hypothetical protein MTH538 superfamily|MTH538 TIR-like domain PF08937|SSF52206 Alide2_1613 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005122|IPR036895 Uracil-DNA glycosylase-like|Uracil-DNA glycosylase-like domain superfamily G3DSA:3.40.470.10|PF03167|SSF52141 Alide2_1614 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.287.1080|SSF101386 Alide2_1616 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015032|IPR035897|IPR036490 Hypothetical protein MTH538 superfamily|MTH538 TIR-like domain|Toll/interleukin-1 receptor homology (TIR) domain superfamily G3DSA:3.40.50.10140|PF08937|SSF52206 Alide2_1617 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SSF47413 Alide2_1618 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009387 Toxin HigB-2 PF06296|PIRSF018634 Alide2_1619 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|PF14659|SSF56349 Alide2_1621 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000305|IPR001162|IPR001943|IPR003583|IPR004791|IPR010994|IPR035901|IPR036876|IPR038476 GIY-YIG endonuclease|GIY-YIG endonuclease superfamily|Helix-hairpin-helix DNA-binding motif, class 1|RuvA domain 2-like|UVR domain|UVR domain superfamily|UvrABC system, subunit C|UvrC family homology region|UvrC homology region 2 superfamily GO:0003677|GO:0005515|GO:0006281|GO:0006289|GO:0009380|GO:0009381 G3DSA:1.10.150.20|G3DSA:3.30.420.340|G3DSA:3.40.1440.10|G3DSA:4.10.860.10|MF_00203|PF01541|PF02151|PF08459|PF14520|SM00278|SM00465|SSF46600|SSF47781|SSF82771|TIGR00194 Alide2_1622 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000462|IPR004570 CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016020|GO:0016021|GO:0016780 G3DSA:1.20.120.1760|PF01066|PIRSF000847|PS00379|TIGR00560 Alide2_1623 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 Alide2_1624 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027304 Trigger factor/SurA domain superfamily G3DSA:1.10.4030.30|G3DSA:3.10.50.40|PF13616|PF13624|SSF109998|SSF54534 Alide2_1625 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_1626 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_1627 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873 AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|SSF56801 Alide2_1628 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029045|IPR034733 Acetyl-CoA carboxylase|ClpP/crotonase-like domain superfamily G3DSA:3.90.226.10|PF01039|SSF52096 Alide2_1629 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR016185 Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif|Single hybrid motif GO:0005524 G3DSA:2.40.50.100|G3DSA:3.30.470.130|PF00289|PF00364|PF02785|PF02786|PS00867|SM00878|SSF51230|SSF51246|SSF52440|SSF56059 Alide2_1630 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000891|IPR013785 Aldolase-type TIM barrel|Pyruvate carboxyltransferase GO:0003824 G3DSA:3.20.20.70|PF00682|SSF51569 Alide2_1631 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_1632 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR013570|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Transcription regulator YsiA, C-terminal GO:0003677 G3DSA:1.10.357.10|PF00440|PF08359|SSF46689|SSF48498 Alide2_1633 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_1635 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001216|IPR001926|IPR005856|IPR005858|IPR036052 Cysteine synthase|Cysteine synthase CysM|Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site|Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004124|GO:0006535 G3DSA:3.40.50.1100|PF00291|PS00901|SSF53686|TIGR01136|TIGR01138 Alide2_1636 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000086|IPR015797|IPR020084|IPR029401 NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily|Nudix hydrolase, N-terminal GO:0016787 G3DSA:3.90.79.10|PF00293|PF14803|PS00893|SSF55811 Alide2_1637 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001455|IPR036868 TusA-like domain|TusA-like domain superfamily G3DSA:3.30.110.40|PF01206|PS01148|SSF64307 Alide2_1638 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005771|IPR005835|IPR029044 Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain|UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011|GO:0009058|GO:0016779 G3DSA:3.90.550.10|PF00483|SSF53448|TIGR01099 Alide2_1639 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001412|IPR002300|IPR002303|IPR009008|IPR009080|IPR010978|IPR013155|IPR014729|IPR019499|IPR037118 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valine-tRNA ligase|Valyl-tRNA synthetase, tRNA-binding arm|Valyl-tRNA synthetase, tRNA-binding arm superfamily|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0000166|GO:0002161|GO:0004812|GO:0004832|GO:0005524|GO:0005737|GO:0006418|GO:0006438 G3DSA:1.10.287.380|G3DSA:1.10.730.10|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_02004|PF00133|PF08264|PF10458|PR00986|PS00178|SSF46589|SSF47323|SSF50677|SSF52374|TIGR00422 Alide2_1641 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003782|IPR036249 Copper chaperone SCO1/SenC|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF02630|SSF52833 Alide2_1642 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009056|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|SSF46626 Alide2_1643 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003468|IPR036909 Cytochrome c oxidase, monohaem subunit/FixO|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF02433|SSF46626 Alide2_1644 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000883|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|SSF81442 Alide2_1645 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005254|IPR010817|IPR011990 HemY, N-terminal|Heme biosynthesis-associated TPR protein|Tetratricopeptide-like helical domain superfamily GO:0005515|GO:0016020|GO:0042168 G3DSA:1.25.40.10|PF07219|SSF48452|TIGR00540 Alide2_1646 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX PF04375 Alide2_1647 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003754|IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase|Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 G3DSA:3.40.50.10090|PF02602|SSF69618 Alide2_1648 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000860|IPR022417|IPR022418|IPR036803 Porphobilinogen deaminase|Porphobilinogen deaminase, C-terminal|Porphobilinogen deaminase, C-terminal domain superfamily|Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 G3DSA:3.30.160.40|G3DSA:3.40.190.10|MF_00260|PF01379|PF03900|PIRSF001438|PR00151|SSF53850|SSF54782|TIGR00212 Alide2_1649 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015813|IPR018129|IPR021135|IPR022805|IPR033129 Phosphoenolpyruvate carboxylase|Phosphoenolpyruvate carboxylase, His active site|Phosphoenolpyruvate carboxylase, Lys active site|Phosphoenolpyruvate carboxylase, bacterial/plant-type|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0006099|GO:0008964|GO:0015977 G3DSA:1.20.1440.90|MF_00595|PF00311|PR00150|PS00393|PS00781|SSF51621 Alide2_1650 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 MF_01891|PD016592|PF05280|PIRSF003159|SSF160930 Alide2_1651 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023559|IPR036194 Flagellar transcriptional activator FlhD|Flagellar transcriptional activator FlhD superfamily GO:0044780|GO:0045893 G3DSA:1.10.4000.10|MF_00725|PD015582|PF05247|SSF63592 Alide2_1652 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002024|IPR008331|IPR009078|IPR012347 Bacterioferritin|Ferritin-like|Ferritin-like superfamily|Ferritin/DPS protein domain GO:0006826|GO:0006879|GO:0008199 G3DSA:1.20.1260.10|PF00210|PIRSF002560|PR00601|PS00549|SSF47240|TIGR00754 Alide2_1653 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000866|IPR017559|IPR019479|IPR024706|IPR036249 Alkyl hydroperoxide reductase subunit C|Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Peroxiredoxin, C-terminal|Thioredoxin-like superfamily GO:0006979|GO:0016209|GO:0016491|GO:0051920|GO:0055114 G3DSA:3.40.30.10|PF00578|PF10417|PIRSF000239|SSF52833|TIGR03137 Alide2_1654 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000103|IPR008255|IPR012081|IPR012336|IPR023753|IPR036188|IPR036249 Alkyl hydroperoxide reductase subunit F|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class-II|Pyridine nucleotide-disulphide oxidoreductase, class-II, active site|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0000302|GO:0008785|GO:0016491|GO:0050660|GO:0051287|GO:0055114 G3DSA:3.40.30.80|G3DSA:3.50.50.60|PF07992|PF13192|PIRSF000238|PR00368|PR00469|PS00573|SSF51905|SSF52833|TIGR03140 Alide2_1655 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002226|IPR010582|IPR011614|IPR018028|IPR020835|IPR024708|IPR024711|IPR037060 Catalase active site|Catalase core domain|Catalase core domain superfamily|Catalase haem-binding site|Catalase immune-responsive domain|Catalase superfamily|Catalase, mono-functional, haem-containing|Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 G3DSA:2.40.180.10|PF00199|PF06628|PIRSF038928|PR00067|PS00437|PS00438|SM01060|SSF56634 Alide2_1656 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020487 Cobalt/zinc/cadmium resistance protein CzcI PD074011 Alide2_1657 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954 Alide2_1659 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369 Alide2_1660 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR004763|IPR027463 Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006812|GO:0008324|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00914 Alide2_1661 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005177|IPR026530 Bifunctional kinase-pyrophosphorylase|Phosphoenolpyruvate synthase regulatory protein GO:0005524|GO:0016772 MF_01062|PF03618 Alide2_1662 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000121|IPR002192|IPR006319|IPR008279|IPR013815|IPR015813|IPR018274|IPR023151|IPR036637 ATP-grasp fold, subdomain 1|PEP-utilising enzyme, C-terminal|PEP-utilising enzyme, active site|PEP-utilising enzyme, conserved site|PEP-utilising enzyme, mobile domain|Phosphoenolpyruvate synthase|Phosphohistidine domain superfamily|Pyruvate phosphate dikinase, PEP/pyruvate-binding|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0005524|GO:0006090|GO:0008986|GO:0016301|GO:0016310|GO:0016772 G3DSA:3.20.20.60|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.50.30.10|PF00391|PF01326|PF02896|PIRSF000854|PS00370|PS00742|SSF51621|SSF52009|SSF56059|TIGR01418 Alide2_1663 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019886 Sodium symporter small subunit, predicted PF13937|TIGR03647 Alide2_1664 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001734|IPR018247|IPR019899|IPR038377 EF-Hand 1, calcium-binding site|Sodium/glucose symporter superfamily|Sodium/solute symporter|Sodium/solute symporter, VC2705 subfamily GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1730.10|PF00474|PS00018|TIGR03648 Alide2_1666 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878|IPR036250|IPR037069 Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|SSF47203|SSF56645 Alide2_1667 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR018060|IPR032687 DNA binding HTH domain, AraC-type|HTH-type transcriptional regulator AraC-type, N-terminal|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12625|PF12833|SM00342|SSF46689 Alide2_1668 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_1669 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_1670 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1671 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|SSF56801 Alide2_1672 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020613|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00737|SSF53901|TIGR01930 Alide2_1673 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_1674 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 Alide2_1676 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001059|IPR008991|IPR011768|IPR012340|IPR013185|IPR013852|IPR014722|IPR015365|IPR020599 Elongation factor P, C-terminal|Nucleic acid-binding, OB-fold|Ribosomal protein L2, domain 2|Translation elongation factor P|Translation elongation factor P/YeiP|Translation elongation factor P/YeiP, central|Translation elongation factor P/YeiP, conserved site|Translation elongation factor, KOW-like|Translation protein SH3-like domain superfamily GO:0003746|GO:0005737|GO:0006414|GO:0043043 G3DSA:2.30.30.30|G3DSA:2.40.50.140|MF_00141|PF01132|PF08207|PF09285|PIRSF005901|PS01275|SM00841|SM01185|SSF50104|SSF50249|TIGR00038 Alide2_1677 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016633 Uncharacterised conserved protein UCP015557 PF10093|PIRSF015557|TIGR03837 Alide2_1678 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_1679 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1680 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000891|IPR013785 Aldolase-type TIM barrel|Pyruvate carboxyltransferase GO:0003824 G3DSA:3.20.20.70|PF00682|SSF51569 Alide2_1681 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1682 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1683 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1684 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1685 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00073|SSF47203|SSF56645 Alide2_1686 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015168 SsuA/THI5-like G3DSA:3.40.190.10|PF09084|SSF53850 Alide2_1687 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_1688 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 Alide2_1689 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR010248|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Histidine utilization repressor|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0006547|GO:0045892 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288|TIGR02018 Alide2_1690 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001106|IPR005921|IPR008948|IPR022313|IPR024083 Aromatic amino acid lyase|Fumarase/histidase, N-terminal|Histidine ammonia-lyase|L-Aspartase-like|Phenylalanine/histidine ammonia-lyases, active site GO:0003824|GO:0004397|GO:0005737|GO:0006548|GO:0016841 G3DSA:1.10.275.10|G3DSA:1.20.200.10|MF_00229|PF00221|PS00488|SSF48557|TIGR01225 Alide2_1691 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR010248|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Histidine utilization repressor|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0006547|GO:0045892 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288|TIGR02018 Alide2_1692 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001248|IPR026030|IPR038271 Purine-cytosine permease|Purine-cytosine permease Fcy2/21/22|Purine-cytosine permease superfamily GO:0005215|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.10.4160.10|PF02133|PIRSF002744 Alide2_1693 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023636|IPR023637|IPR035085|IPR035400|IPR035401|IPR036190|IPR038364 Urocanase|Urocanase conserved site|Urocanase superfamily|Urocanase, C-terminal domain|Urocanase, N-terminal domain|Urocanase, Rossmann-like domain|Urocanase, central domain superfamily GO:0016153 G3DSA:3.40.1770.10|G3DSA:3.40.50.10730|MF_00577|PF01175|PF17391|PF17392|PIRSF001423|PS01233|SSF111326|TIGR01228 Alide2_1694 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_1695 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001320|IPR001638|IPR018313 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site GO:0004970|GO:0016020 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SM00079|SSF53850 Alide2_1696 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 Alide2_1697 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 Alide2_1698 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010282|IPR011051|IPR014710 RmlC-like cupin domain superfamily|RmlC-like jelly roll fold|Uncharacterised protein family HutD/Ves G3DSA:2.60.120.10|PF05962|SSF51182 Alide2_1699 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005920|IPR006680|IPR011059|IPR032466 Amidohydrolase-related|Imidazolonepropionase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0005737|GO:0016787|GO:0016810|GO:0016812|GO:0019556 G3DSA:2.30.40.10|G3DSA:3.20.20.140|MF_00372|PF01979|SSF51338|SSF51556|TIGR01224 Alide2_1700 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR010252|IPR011059|IPR032466 Amidohydrolase-related|Formiminoglutamate deiminase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51556|TIGR02022 Alide2_1701 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007709|IPR010247 N-formylglutamate amidohydrolase|N-formylglutamate deformylase G3DSA:3.40.630.40|PF05013|SSF53187|TIGR02017 Alide2_1702 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001920|IPR004391|IPR015942|IPR018187 Asp/Glu racemase|Asp/Glu racemase, active site 1|Asp/Glu/hydantoin racemase|Glutamate racemase GO:0006807|GO:0008881|GO:0009252|GO:0016855|GO:0036361 G3DSA:3.40.50.1860|MF_00258|PF01177|PS00923|SSF53681|TIGR00067 Alide2_1703 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010342|IPR029063 Protein of unknown function DUF938|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF06080|SSF53335 Alide2_1704 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR015813 HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|SSF51621 Alide2_1705 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010102|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase|Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720|TIGR01780 Alide2_1706 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007392|IPR013974 D-galactarate/Altronate dehydratase, C-terminal|SAF domain GO:0016829 G3DSA:3.90.1210.30|PF04295|PF08666|SM00858 Alide2_1707 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1708 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1709 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|G3DSA:3.40.1090.20|PF01734|SSF52151 Alide2_1710 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011829|IPR019818|IPR024084 Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain|Tartrate dehydrogenase GO:0000287|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|PF00180|PS00470|SM01329|SSF53659|TIGR02089 Alide2_1711 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_1712 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007791|IPR029024 Co-chaperone DjlA, N-terminal|TerB-like G3DSA:1.10.3680.10|PF05099|SSF158682 Alide2_1714 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011006 CheY-like superfamily G3DSA:3.40.50.2300|SSF52172 Alide2_1715 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000119|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|PS00045|SM00411|SSF47729 Alide2_1716 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_1717 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1719 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR011283|IPR020904|IPR036291 Acetoacetyl-CoA reductase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0005737|GO:0016491|GO:0018454|GO:0042619|GO:0055114 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01829 Alide2_1720 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018968 Phasin PF09361 Alide2_1721 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010941|IPR022211|IPR029058 Alpha/Beta hydrolase fold|Poly-beta-hydroxybutyrate polymerase N-terminal|Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 G3DSA:3.40.50.1820|PF07167|PF12551|SSF53474 Alide2_1722 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR013570|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Transcription regulator YsiA, C-terminal GO:0003677 G3DSA:1.10.357.10|PF00440|PF08359|SSF46689|SSF48498 Alide2_1724 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.50.100|PF16576|SSF111369 Alide2_1725 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_1726 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF12698 Alide2_1727 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF12698 Alide2_1728 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_1729 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021309 Protein of unknown function DUF2892 PF11127 Alide2_1730 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR011108|IPR022712|IPR036866 Beta-Casp domain|Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like|Zn-dependent metallo-hydrolase, RNA specificity domain G3DSA:3.40.50.10890|G3DSA:3.60.15.10|PF00753|PF07521|PF10996|SM00849|SM01027|SSF56281 Alide2_1731 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005269|IPR031100 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG|LOG family PF03641|SSF102405|TIGR00730 Alide2_1732 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018707|IPR037107 Protein of unknown function DUF2219|Putative outer membrane protein superfamily G3DSA:2.40.128.140|PF09982 Alide2_1733 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002321|IPR010980 Cytochrome c, class II|Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 G3DSA:1.20.120.10|PF01322|SSF47175 Alide2_1735 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1737 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010260 DNA-binding transcriptional activator AlpA G3DSA:1.10.238.160|PF05930 Alide2_1738 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|SSF52540 Alide2_1740 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022304|IPR036086 Integrating conjugative element, PFGI-1, ParB|ParB/Sulfiredoxin superfamily SSF110849|TIGR03764 Alide2_1741 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021364 Protein of unknown function DUF2857 PF11198 Alide2_1743 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025202 Phospholipase D-like domain G3DSA:3.30.870.10|PF13091|SSF56024 Alide2_1744 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014996 Integrating conjugative element protein, PFL4669 PF08900|TIGR03761 Alide2_1745 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021502 Protein of unknown function DUF3158 PF11358 Alide2_1746 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000424|IPR012340 Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding GO:0003697 G3DSA:2.40.50.140|PF00436|PIRSF002070|SSF50249 Alide2_1747 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003601|IPR003602|IPR005738|IPR006171|IPR013497|IPR013498|IPR013824|IPR013825|IPR013826|IPR023405|IPR023406 DNA topoisomerase III|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 1|DNA topoisomerase, type IA, central region, subdomain 2|DNA topoisomerase, type IA, central region, subdomain 3|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|DNA topoisomerase, type IA, zn finger|TOPRIM domain GO:0003677|GO:0003916|GO:0003917|GO:0005694|GO:0006265 G3DSA:1.10.290.10|G3DSA:1.10.460.10|G3DSA:2.70.20.10|G3DSA:3.30.65.10|G3DSA:3.40.50.140|PF01131|PF01396|PF01751|PR00417|PS00396|SM00436|SM00437|SM00493|SSF56712|SSF57783|TIGR01056 Alide2_1752 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021436 Protein of unknown function DUF3085 PF11284 Alide2_1753 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021960 Protein of unknown function DUF3577 PF12101 Alide2_1754 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021693 Protein of unknown function DUF3275 PF11679 Alide2_1757 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002052|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0008168|GO:0032259 G3DSA:3.40.50.150|PR00507|PS00092|SSF53335 Alide2_1759 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001650|IPR014001|IPR027417|IPR038718 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|SNF2-like, N-terminal domain superfamily G3DSA:3.40.50.10810|G3DSA:3.40.50.300|PF00271|SM00487|SSF52540 Alide2_1761 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018634 Chromate resistance exported protein PF09828 Alide2_1762 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003370|IPR014047 Chromate transporter|Chromate transporter, long chain GO:0015109|GO:0015703 PF02417|PIRSF004810|TIGR00937 Alide2_1763 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001189|IPR019832|IPR036314|IPR036324 Manganese/iron superoxide dismutase|Manganese/iron superoxide dismutase, C-terminal|Manganese/iron superoxide dismutase, C-terminal domain superfamily|Manganese/iron superoxide dismutase, N-terminal domain superfamily GO:0004784|GO:0006801|GO:0046872|GO:0055114 G3DSA:2.40.500.20|PF02777|PIRSF000349|SSF46609|SSF54719 Alide2_1764 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_1765 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_1766 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011094 Uncharacterised protein family, LppY/LpqO PF07485 Alide2_1767 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018634 Chromate resistance exported protein PF09828 Alide2_1768 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_1769 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 Alide2_1770 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003660|IPR003661|IPR004358|IPR036097|IPR036890 HAMP domain|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00304|SM00387|SM00388|SSF158472|SSF47384|SSF55874 Alide2_1771 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001258|IPR011042 NHL repeat|Six-bladed beta-propeller, TolB-like GO:0005515 G3DSA:2.120.10.30|PF01436|SSF101898 Alide2_1772 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025711 PepSY domain PF13670 Alide2_1773 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 Alide2_1775 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001791|IPR013320 Concanavalin A-like lectin/glucanase domain superfamily|Laminin G domain G3DSA:2.60.120.560|PF02210|SSF49899 Alide2_1776 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013320 Concanavalin A-like lectin/glucanase domain superfamily G3DSA:2.60.120.560|SSF49899 Alide2_1778 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022260 Integrating conjugative element protein PilL, PFGI-1 TIGR03748 Alide2_1780 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022293 Integrating conjugative element protein, PFL4693 TIGR03759 Alide2_1781 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023346 Lysozyme-like domain superfamily SSF53955 Alide2_1782 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021300 Integrating conjugative element protein, PFL4695 PF11072|TIGR03765 Alide2_1783 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022458|IPR022503|IPR027417|IPR032689 Conjugative coupling factor TraG/TraD|Conjugative coupling factor TraG/TraD, PFGI-1|P-loop containing nucleoside triphosphate hydrolase|TraD/TraG, TraM recognition site G3DSA:3.40.50.300|PF12696|SSF52540|TIGR03743|TIGR03754 Alide2_1784 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022266 Integrating conjugative element protein, PFL4697-type PF14348|TIGR03747 Alide2_1785 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026866|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Protein CR006, P-loop domain G3DSA:3.40.50.300|PF13166|SSF52540 Alide2_1786 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006935|IPR027417 Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0005524|GO:0016787 G3DSA:3.40.50.300|PF04851|SSF52540 Alide2_1787 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002052|IPR002295|IPR002941|IPR029063 DNA methylase N-4/N-6|DNA methylase, N-6 adenine-specific, conserved site|N6 adenine-specific DNA methyltransferase, D21 class|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0003677|GO:0006306|GO:0008168|GO:0008170|GO:0032259 PF01555|PIRSF015855|PR00506|PS00092|SSF53335 Alide2_1788 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018891 Abortive bacteriophage infection, resistance PF10592 Alide2_1789 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000209|IPR015500|IPR036852 Peptidase S8, subtilisin-related|Peptidase S8/S53 domain|Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 G3DSA:3.40.50.200|PF00082|PR00723|SSF52743 Alide2_1790 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR003959|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF00004|SM00382|SSF52540 Alide2_1791 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000330|IPR001650|IPR014001|IPR027417|IPR038718 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|SNF2-like, N-terminal domain superfamily|SNF2-related, N-terminal domain GO:0005524 G3DSA:3.40.50.10810|G3DSA:3.40.50.300|PF00176|PF00271|SM00487|SM00490|SSF52540 Alide2_1792 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061|IPR010093 Putative DNA-binding domain superfamily|SinI-like, DNA-binding domain GO:0003677 G3DSA:1.10.1660.10|PF12728|SSF46955|TIGR01764 Alide2_1793 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019110 Uncharacterised protein family, RAQPRD PF09686|TIGR01690 Alide2_1794 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021676 Protein of unknown function DUF3262 PF11660|TIGR03758 Alide2_1795 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021356 Integrating conjugative element protein PFL4702 PF11190|TIGR03745 Alide2_1796 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021877 Protein of unknown function DUF3487 PF11990|TIGR03750 Alide2_1797 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021548 Protein of unknown function DUF2895 PF11444|TIGR03746 Alide2_1798 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021844 Integrating conjugative element protein, PFL4704 PF11920|TIGR03749 Alide2_1799 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021207 Integrating conjugative element protein, PFL4705 TIGR03752 Alide2_1800 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022262 Lipoprotein, putative TIGR03751 Alide2_1801 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022303|IPR025955|IPR027417 Conjugative transfer ATPase|P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:3.40.50.300|PF11130|SSF52540|TIGR03744 Alide2_1802 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012336|IPR036249 Thioredoxin-like fold|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF13462|SSF52833 Alide2_1803 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001405|IPR025657 RadC-like JAB domain|Uncharacterised protein family UPF0758 G3DSA:3.40.140.10|PF04002|SSF102712|TIGR00608 Alide2_1804 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 PF13411|SSF46955 Alide2_1805 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002052|IPR003356|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|DNA methylase, adenine-specific|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0003677|GO:0006306|GO:0008168|GO:0008170|GO:0032259 G3DSA:3.40.50.150|PF02384|PR00507|PS00092|SSF53335 Alide2_1807 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011090 Integrating conjugative element protein, PFL4709 PF07511|TIGR03757 Alide2_1808 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009649|IPR026331 Integrating conjugative element protein PFL_4710|TraU PF06834|TIGR03756 Alide2_1809 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021204 Integrating conjugative element protein, PFL4711 TIGR03755 Alide2_1811 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012931 TraG-like, N-terminal PF07916 Alide2_1812 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022213 Protein of unknown function DUF3742 PF12553 Alide2_1813 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021561|IPR033455 Transcriptional regulator AbiEi antitoxin, N-terminal domain|Transcriptional regulator, AbiEi 3 antitoxin, Type IV TA system PF11459|PF17194 Alide2_1814 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system PF08843 Alide2_1815 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011093|IPR011119|IPR022391|IPR036388|IPR036390 Integrating conjugative element relaxase, PFGI-1 class|Putative conjugal transfer nickase/helicase TraI, C-terminal|Uncharacterised domain, helicase/relaxase, putative|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|G3DSA:1.10.3210.40|G3DSA:2.40.10.200|PF07514|PF07515|SSF46785|TIGR03760 Alide2_1816 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_1817 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005119 LysR, substrate-binding G3DSA:3.40.190.10|PF03466|SSF53850 Alide2_1819 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000326|IPR001872|IPR036938 Peptidase A8, signal peptidase II|Phosphatidic acid phosphatase type 2/haloperoxidase|Phosphatidic acid phosphatase type 2/haloperoxidase superfamily GO:0004190|GO:0006508|GO:0016020 G3DSA:1.20.144.10|MF_00161|PF01252|PF01569|PR00781|PS00855|SM00014|SSF48317|TIGR00077 Alide2_1820 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR006121|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036163|IPR036412 HAD superfamily|HAD-like superfamily|Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872 G3DSA:2.70.150.20|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PR00941|PS00154|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01512|TIGR01525 Alide2_1821 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061|IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0045893|GO:0046872 G3DSA:1.10.1660.10|PF13411|PR00040|SM00422|SSF46955|TIGR02047 Alide2_1822 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 Alide2_1823 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025159 Transcriptional regulator, AbiEi antitoxin PF13338 Alide2_1824 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021804 Protein of unknown function DUF3375 PF11855 Alide2_1825 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025449 Protein of unknown function DUF4194 PF13835 Alide2_1826 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.1140.10|PF13555|PF13558|SSF52540 Alide2_1827 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014544|IPR024534|IPR024537 Domain of unknown function DUF2220|Domain of unknown function DUF3322|Uncharacterised conserved protein UCP028408 PF09983|PF11795|PIRSF028408 Alide2_1830 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 Alide2_1831 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_1832 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 Alide2_1833 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|SSF47203|SSF56645 Alide2_1834 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1835 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02771|SSF47203|SSF56645 Alide2_1836 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_1837 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002878|IPR012340|IPR022002 Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold G3DSA:1.10.12.20|PF01796|PF12172|SSF50249 Alide2_1838 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039 Thiolase|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PIRSF000429|SSF53901 Alide2_1839 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_1840 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_1841 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003781|IPR013815|IPR016102|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF56059 Alide2_1843 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_1844 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_1845 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1847 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1848 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1849 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069|IPR039569 HotDog domain superfamily|MaoC-like dehydratase domain|N-terminal of MaoC-like dehydratase G3DSA:3.10.129.10|PF01575|PF13452|SSF54637 Alide2_1850 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036291 NAD(P)-binding domain superfamily G3DSA:3.40.50.720|SSF51735 Alide2_1851 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|PF03972|SSF103378 Alide2_1852 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR036388|IPR036390 Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|PF09339|SM00346|SSF46785 Alide2_1853 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000049|IPR012255|IPR014729|IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055 G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|SM00893|SSF52402 Alide2_1854 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035 DHS-like NAD/FAD-binding domain superfamily|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|SM00893|SSF52402|SSF52467 Alide2_1855 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_1856 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 Alide2_1857 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1858 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|PR00111|SSF53474 Alide2_1859 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1860 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026888|IPR037171|IPR038460 Acetyl-CoA hydrolase/transferase C-terminal domain|Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily|NagB/RpiA transferase-like G3DSA:3.30.750.70|G3DSA:3.40.1080.10|G3DSA:3.40.1080.20|PF13336|SSF100950 Alide2_1861 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|PF03972|SSF103378 Alide2_1862 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1863 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_1864 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|SSF47203|SSF56645 Alide2_1865 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 Alide2_1866 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029069|IPR039569 HotDog domain superfamily|N-terminal of MaoC-like dehydratase G3DSA:3.10.129.10|PF13452|SSF54637 Alide2_1867 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_1868 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_1869 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_1870 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_1871 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_1872 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR016185 Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif|Single hybrid motif GO:0005524 G3DSA:2.40.50.100|G3DSA:3.30.470.130|PF00289|PF00364|PF02785|PF02786|PS00866|PS00867|SM00878|SSF51230|SSF51246|SSF52440|SSF56059 Alide2_1873 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029045|IPR034733 Acetyl-CoA carboxylase|ClpP/crotonase-like domain superfamily G3DSA:3.90.226.10|PF01039|SSF52096 Alide2_1875 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010839 Acyclic terpene utilisation PF07287 Alide2_1876 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 Alide2_1879 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_1880 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_1882 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021502 Protein of unknown function DUF3158 PF11358 Alide2_1883 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000424|IPR012340 Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding GO:0003697 G3DSA:2.40.50.140|PF00436|PIRSF002070|SSF50249 Alide2_1884 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003601|IPR003602|IPR005738|IPR006171|IPR013497|IPR013498|IPR013824|IPR013825|IPR013826|IPR023405|IPR023406 DNA topoisomerase III|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 1|DNA topoisomerase, type IA, central region, subdomain 2|DNA topoisomerase, type IA, central region, subdomain 3|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|DNA topoisomerase, type IA, zn finger|TOPRIM domain GO:0003677|GO:0003916|GO:0003917|GO:0005694|GO:0006265 G3DSA:1.10.290.10|G3DSA:1.10.460.10|G3DSA:2.70.20.10|G3DSA:3.30.65.10|G3DSA:3.40.50.140|PF01131|PF01396|PF01751|PR00417|PS00396|SM00436|SM00437|SM00493|SSF56712|SSF57783|TIGR01056 Alide2_1885 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR006659|IPR006660|IPR016181|IPR036249 Acyl-CoA N-acyltransferase|Arsenate reductase|Arsenate reductase-like|GNAT domain|Thioredoxin-like superfamily GO:0008794|GO:0055114 G3DSA:3.40.30.10|G3DSA:3.40.630.30|PF00583|PF03960|SSF52833|SSF55729|TIGR00014 Alide2_1886 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002657|IPR004706|IPR038770 Arsenical-resistance protein Acr3|Bile acid:sodium symporter/arsenical resistance protein Acr3|Sodium/solute symporter superfamily GO:0015103|GO:0015297|GO:0016020|GO:0016021 G3DSA:1.20.1530.20|PF01758|PIRSF005508|TIGR00832 Alide2_1887 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023485|IPR036196 Phosphotyrosine protein phosphatase I|Phosphotyrosine protein phosphatase I superfamily G3DSA:3.40.50.2300|PF01451|SM00226|SSF52788 Alide2_1888 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase G3DSA:3.10.180.10|SSF54593 Alide2_1889 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001845|IPR036388|IPR036390 HTH ArsR-type DNA-binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12840|PR00778|SM00418|SSF46785 Alide2_1895 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021436 Protein of unknown function DUF3085 PF11284 Alide2_1896 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002500|IPR014729 Phosphoadenosine phosphosulphate reductase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824 G3DSA:3.40.50.620|PF01507|SSF52402 Alide2_1897 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021960 Protein of unknown function DUF3577 PF12101 Alide2_1898 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021693 Protein of unknown function DUF3275 PF11679 Alide2_1901 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026325 Protein of unknown function DUF932 PF06067 Alide2_1903 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002052|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0008168|GO:0032259 G3DSA:3.40.50.150|PR00507|PS00092|SSF53335 Alide2_1905 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001650|IPR014001|IPR027417|IPR038718 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|SNF2-like, N-terminal domain superfamily G3DSA:3.40.50.10810|G3DSA:3.40.50.300|PF00271|SM00487|SSF52540 Alide2_1906 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022260 Integrating conjugative element protein PilL, PFGI-1 TIGR03748 Alide2_1908 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022293 Integrating conjugative element protein, PFL4693 TIGR03759 Alide2_1909 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 PF01464|SSF53955 Alide2_1910 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021300 Integrating conjugative element protein, PFL4695 PF11072|TIGR03765 Alide2_1911 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022458|IPR022503|IPR027417|IPR032689 Conjugative coupling factor TraG/TraD|Conjugative coupling factor TraG/TraD, PFGI-1|P-loop containing nucleoside triphosphate hydrolase|TraD/TraG, TraM recognition site G3DSA:3.40.50.300|PF12696|SSF52540|TIGR03743|TIGR03754 Alide2_1912 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022266 Integrating conjugative element protein, PFL4697-type PF14348|TIGR03747 Alide2_1913 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019110 Uncharacterised protein family, RAQPRD PF09686|TIGR01690 Alide2_1914 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021676 Protein of unknown function DUF3262 PF11660|TIGR03758 Alide2_1915 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021356 Integrating conjugative element protein PFL4702 PF11190|TIGR03745 Alide2_1916 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021877 Protein of unknown function DUF3487 PF11990|TIGR03750 Alide2_1917 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021548 Protein of unknown function DUF2895 PF11444|TIGR03746 Alide2_1918 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021844 Integrating conjugative element protein, PFL4704 PF11920|TIGR03749 Alide2_1919 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021207 Integrating conjugative element protein, PFL4705 TIGR03752 Alide2_1920 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022262 Lipoprotein, putative TIGR03751 Alide2_1921 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022303|IPR025955|IPR027417 Conjugative transfer ATPase|P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC/Conjugative transfer ATPase PF11130|SSF52540|TIGR03744 Alide2_1922 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012336|IPR036249 Thioredoxin-like fold|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF13462|SSF52833 Alide2_1924 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR013570|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Transcription regulator YsiA, C-terminal GO:0003677 G3DSA:1.10.357.10|PF00440|PF08359|SSF46689|SSF48498 Alide2_1925 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_1926 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003838|IPR025857 ABC transporter permease protein domain|MacB-like periplasmic core domain GO:0016020 PF02687|PF12704 Alide2_1927 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_1928 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002321|IPR010980 Cytochrome c, class II|Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 G3DSA:1.20.120.10|PF01322|SSF47175 Alide2_1929 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_1930 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR015378|IPR036397 Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily|Transposase-like, Mu, C-terminal GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF09299|PF13518|SSF53098 Alide2_1931 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR008868|IPR027417 AAA+ ATPase domain|Bacterial TniB|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF05621|SM00382|SSF52540 Alide2_1932 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009492 TniQ PF06527 Alide2_1934 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012654 Conserved hypothetical protein CHP02391 PF09509|TIGR02391 Alide2_1935 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002575|IPR011009 Aminoglycoside phosphotransferase|Protein kinase-like domain superfamily G3DSA:3.90.1200.10|PF01636|SSF56112 Alide2_1936 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR011527|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|SM00382|SSF52540|SSF90123 Alide2_1937 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR011527|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123 Alide2_1939 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011094 Uncharacterised protein family, LppY/LpqO PF07485 Alide2_1941 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018634 Chromate resistance exported protein PF09828 Alide2_1942 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001763|IPR019832|IPR036314|IPR036324|IPR036873 Manganese/iron superoxide dismutase, C-terminal|Manganese/iron superoxide dismutase, C-terminal domain superfamily|Manganese/iron superoxide dismutase, N-terminal domain superfamily|Rhodanese-like domain|Rhodanese-like domain superfamily GO:0004784|GO:0006801|GO:0046872|GO:0055114 G3DSA:2.40.500.20|G3DSA:3.40.250.10|PF00581|PF02777|SM00450|SSF46609|SSF52821|SSF54719 Alide2_1943 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003370|IPR014047 Chromate transporter|Chromate transporter, long chain GO:0015109|GO:0015703 PF02417|PIRSF004810|TIGR00937 Alide2_1944 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018634 Chromate resistance exported protein PF09828 Alide2_1945 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006118|IPR006119|IPR009057|IPR036162 Homeobox-like domain superfamily|Recombinase, conserved site|Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:3.40.50.1390|PF00239|PS00398|SM00857|SSF46689|SSF53041 Alide2_1946 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021767 Transposon Tn21 modulator protein PF11809 Alide2_1947 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007746 Broad mercury transporter MerE GO:0015097|GO:0015694|GO:0016020 PD007968|PF05052 Alide2_1948 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061|IPR011797 MerR-type HTH domain|Mercuric resistence transcriptional repressor protein MerD|Putative DNA-binding domain superfamily GO:0003677|GO:0006355|GO:0045892|GO:0046689 G3DSA:1.10.1660.10|PF13411|PR00040|SM00422|SSF46955|TIGR02054 Alide2_1949 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001100|IPR004099|IPR006121|IPR012999|IPR016156|IPR017969|IPR021179|IPR023753|IPR036163|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|Mercury(II) reductase|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0009055|GO:0016152|GO:0016491|GO:0016668|GO:0030001|GO:0045340|GO:0045454|GO:0046872|GO:0050660|GO:0050661|GO:0050787|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.30.70.100|G3DSA:3.50.50.60|PF00403|PF02852|PF07992|PIRSF000350|PR00945|PS00076|PS01047|SSF51905|SSF55008|SSF55424|TIGR02053 Alide2_1950 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004891 Mercury transport protein MerC GO:0015097|GO:0015694|GO:0016020 PD007347|PF03203 Alide2_1951 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001802|IPR006121|IPR011795|IPR017969|IPR036163 Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|Mercuric transport protein periplasmic component|Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0015097|GO:0015694|GO:0030001|GO:0042597|GO:0045340|GO:0046689|GO:0046872 G3DSA:3.30.70.100|PF00403|PR00946|PS01047|SSF55008|TIGR02052 Alide2_1952 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 PF02411 Alide2_1953 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061|IPR011794|IPR015358 Hg(II)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain superfamily|Transcription regulator MerR, DNA binding GO:0003677|GO:0006355|GO:0045340|GO:0046689 G3DSA:1.10.1660.10|PF00376|PF09278|PR00040|PS00552|SM00422|SSF46955|TIGR02051 Alide2_1956 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011090 Integrating conjugative element protein, PFL4709 PF07511|TIGR03757 Alide2_1957 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009649|IPR026331 Integrating conjugative element protein PFL_4710|TraU PF06834|TIGR03756 Alide2_1958 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021204 Integrating conjugative element protein, PFL4711 TIGR03755 Alide2_1960 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012931 TraG-like, N-terminal PF07916 Alide2_1961 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022213 Protein of unknown function DUF3742 PF12553 Alide2_1962 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021679 Toxin endonuclease, YhaV GO:0004540|GO:0110001 PF11663 Alide2_1963 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007159|IPR031848|IPR037914 PrlF antitoxin|SpoVT-AbrB domain|SpoVT-AbrB domain superfamily GO:0001558|GO:0003677|GO:0003700|GO:0097351 G3DSA:2.10.260.10|PD030562|PF15937|SM00966|SSF89447|TIGR01439 Alide2_1964 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011093|IPR011119|IPR022391|IPR036388|IPR036390 Integrating conjugative element relaxase, PFGI-1 class|Putative conjugal transfer nickase/helicase TraI, C-terminal|Uncharacterised domain, helicase/relaxase, putative|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|G3DSA:1.10.3210.40|G3DSA:2.40.10.200|PF07514|PF07515|SSF46785|TIGR03760 Alide2_1965 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_1966 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005119 LysR, substrate-binding G3DSA:3.40.190.10|PF03466|SSF53850 Alide2_1967 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 Alide2_1968 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000944|IPR030489|IPR036388|IPR036390 Transcription regulator Rrf2-type|Transcription regulator Rrf2-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF02082|PS01332|SSF46785|TIGR00738 Alide2_1970 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003817|IPR033177|IPR033178 Phosphatidylserine decarboxylase|Phosphatidylserine decarboxylase, prokaryotic type 1|Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 MF_00662|PF02666|TIGR00163 Alide2_1971 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644|IPR007065 CBS domain|HPP G3DSA:3.10.580.10|PF00571|PF04982|SM00116|SSF54631 Alide2_1972 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004368|IPR006196|IPR012340 Nucleic acid-binding, OB-fold|RNA-binding domain, S1, IF1 type|Translation initiation factor IF-1 GO:0003723|GO:0003743|GO:0006413 G3DSA:2.40.50.140|MF_00075|PF01176|SSF50249|TIGR00008 Alide2_1973 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 Alide2_1974 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012429 Domain of unknown function DUF1624 PF07786 Alide2_1975 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000119|IPR010992 Histone-like DNA-binding protein|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|SM00411|SSF47729 Alide2_1976 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000110|IPR003029|IPR012340|IPR022967 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribosomal protein S1|S1 domain GO:0003676|GO:0003723|GO:0003735|GO:0005840|GO:0006412 G3DSA:2.40.50.140|PF00575|PIRSF002111|PR00681|SM00316|SSF50249|TIGR00717 Alide2_1977 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001986|IPR003136|IPR006264|IPR011994|IPR013792|IPR023193|IPR027417|IPR036968 3-phosphoshikimate 1-carboxyvinyltransferase|3-phosphoshikimate 1-carboxyvinyltransferase, conserved site|Cytidylate kinase|Cytidylate kinase domain|Enolpyruvate transferase domain|Enolpyruvate transferase domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824|GO:0003866|GO:0004127|GO:0005524|GO:0006139|GO:0009073|GO:0016765 G3DSA:3.40.50.300|G3DSA:3.65.10.10|MF_00210|MF_00238|PF00275|PF02224|PS00104|PS00885|SSF52540|SSF55205|TIGR00017|TIGR01356 Alide2_1978 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003099|IPR008927|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 G3DSA:1.10.3660.10|G3DSA:3.40.50.720|PF02153|SSF48179|SSF51735 Alide2_1979 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001086|IPR002701|IPR002912|IPR008242|IPR010957|IPR018528|IPR036263|IPR036979 ACT domain|Bifunctional P-protein, chorismate mutase/prephenate dehydratase|Chorismate mutase II, prokaryotic-type|Chorismate mutase domain superfamily|Chorismate mutase type II superfamily|Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain|Prephenate dehydratase|Prephenate dehydratase, conserved site GO:0004106|GO:0004664|GO:0005737|GO:0009094|GO:0046417 G3DSA:1.20.59.10|G3DSA:3.30.70.260|G3DSA:3.40.190.10|PF00800|PF01817|PF01842|PIRSF001500|PS00858|SM00830|SSF48600|SSF53850|SSF55021|TIGR01807 Alide2_1980 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000192|IPR015421|IPR015422|IPR015424|IPR020578|IPR022278 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Phosphoserine aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0004648|GO:0006564 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00160|PF00266|PIRSF000525|PS00595|SSF53383|TIGR01364 Alide2_1981 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002205|IPR005743|IPR006691|IPR013757|IPR013758|IPR013760|IPR035516 DNA gyrase, subunit A|DNA gyrase/topoisomerase IV, subunit A, C-terminal|DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain superfamily|Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265 G3DSA:1.10.268.10|G3DSA:2.120.10.90|G3DSA:3.30.1360.40|G3DSA:3.90.199.10|MF_01897|PF00521|PF03989|SM00434|SSF101904|SSF56719|TIGR01063 Alide2_1982 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006664|IPR006665|IPR036737 OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial GO:0009279|GO:0016021 G3DSA:3.30.1330.60|PF00691|PR01021|SSF103088 Alide2_1983 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010233|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 G3DSA:3.40.50.150|MF_00472|PF13489|SSF53335|TIGR01983 Alide2_1984 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006346|IPR006439|IPR023198|IPR023214|IPR036412 2-phosphoglycolate phosphatase-like, prokaryotic|HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2 GO:0016787|GO:0016791 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01449|TIGR01509|TIGR01549 Alide2_1985 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_1986 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006139|IPR006140|IPR029752|IPR029753|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|PS00065|PS00671|SSF51735|SSF52283 Alide2_1987 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR005769|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|ABC transporter, permease PhnE/PtxC|MetI-like superfamily GO:0005887|GO:0015604|GO:0015716|GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01097 Alide2_1988 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 G3DSA:3.40.190.10|PF12974|SSF53850|TIGR01098 Alide2_1989 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR012693|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter, phosphonate import, PhnC|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015416|GO:0015716|GO:0016020|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR02315 Alide2_1990 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021139|IPR025605 NYN domain, limkain-b1-type|OST-HTH/LOTUS domain G3DSA:1.10.10.1880|G3DSA:3.40.50.1010|PF01936|PF12872 Alide2_1991 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.10.2830|SSF109709 Alide2_1992 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic SSF109709 Alide2_1993 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006119|IPR011109|IPR036162|IPR038109 DNA-binding recombinase domain|DNA-binding recombinase domain superfamily|Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:1.10.10.2600|G3DSA:3.40.50.1390|PF00239|PF07508|SM00857|SSF53041 Alide2_1994 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021322 Protein of unknown function DUF2924 PF11149 Alide2_1996 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF12844|SM00530|SSF47413 Alide2_2000 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061 Putative DNA-binding domain superfamily SSF46955 Alide2_2002 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF13479 Alide2_2004 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018874 Bacteriophage Mx8, p63, C-terminal PF10546 Alide2_2006 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011604 Exonuclease, phage-type/RecB, C-terminal G3DSA:3.90.320.10 Alide2_2008 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006500|IPR014818 Bacteriophage/plasmid primase, P4, C-terminal|DNA primase, phage/plasmid G3DSA:3.40.1360.10|PF08706|SM00885|TIGR01613 Alide2_2009 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012337|IPR036397 Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676 G3DSA:3.30.420.10|SSF53098 Alide2_2012 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001091|IPR002941|IPR003115|IPR015840|IPR017985|IPR029063|IPR036086 DNA methyase, ParB domain-containing|DNA methylase N-4/N-6|DNA methylase, N-4 cytosine-specific, conserved site|ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily|Restriction/modification DNA-methylase|S-adenosyl-L-methionine-dependent methyltransferase GO:0003677|GO:0006306|GO:0008170|GO:0015667|GO:0090124 G3DSA:3.40.50.150|G3DSA:3.90.1530.30|PF01555|PF02195|PIRSF036758|PR00508|PS00093|SM00470|SSF110849|SSF53335 Alide2_2013 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001091|IPR002052|IPR002941|IPR003115|IPR015840|IPR029063|IPR036086 DNA methyase, ParB domain-containing|DNA methylase N-4/N-6|DNA methylase, N-6 adenine-specific, conserved site|ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily|Restriction/modification DNA-methylase|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0003677|GO:0006306|GO:0008168|GO:0008170|GO:0032259 G3DSA:3.40.50.150|G3DSA:3.90.1530.30|PF01555|PF02195|PIRSF036758|PR00508|PS00092|SM00470|SSF110849|SSF53335 Alide2_2015 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021880 Protein of unknown function DUF3489 PF11994 Alide2_2018 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008866 Bacteriophage lambda, GpA G3DSA:3.40.50.300|PF05876 Alide2_2022 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 PF05136|TIGR01539 Alide2_2023 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002142|IPR029045 ClpP/crotonase-like domain superfamily|Peptidase S49 GO:0006508|GO:0008233 G3DSA:3.40.1750.20|G3DSA:3.90.226.10|PF01343|SSF52096 Alide2_2024 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004195 Head decoration protein D PF02924 Alide2_2025 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005564 Major capsid protein GpE PF03864 Alide2_2029 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016893 Protein of unknown function UCP028589 PIRSF028589 Alide2_2033 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013491 Caudovirus, tape measure, N-terminal TIGR02675 Alide2_2043 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002196|IPR023346 Glycoside hydrolase, family 24|Lysozyme-like domain superfamily GO:0003796|GO:0009253|GO:0016998 G3DSA:1.10.530.40|PF00959|SSF53955 Alide2_2047 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.30.460.10|SSF81301 Alide2_2049 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006935|IPR007409|IPR014001|IPR027417 Helicase superfamily 1/2, ATP-binding domain|Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0005524|GO:0006304|GO:0016787 G3DSA:3.40.50.300|G3DSA:3.90.1570.50|PF04313|PF04851|SM00487|SSF52540 Alide2_2050 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 G3DSA:3.90.220.20|PF01420|SSF116734 Alide2_2051 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002052|IPR003356|IPR022749|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|DNA methylase, adenine-specific|N6 adenine-specific DNA methyltransferase, N-terminal domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0003677|GO:0006306|GO:0008168|GO:0008170|GO:0032259 G3DSA:3.40.50.150|PF02384|PF12161|PR00507|PS00092|SSF53335 Alide2_2052 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004919|IPR011089 Domain of unknown function DUF1524|Domain of unknown function DUF262 PF03235|PF07510 Alide2_2053 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016634|IPR026881 WYL domain|WYL domain protein, s026 type PF13280|PIRSF015558 Alide2_2054 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002196|IPR023346 Glycoside hydrolase, family 24|Lysozyme-like domain superfamily GO:0003796|GO:0009253|GO:0016998 G3DSA:1.10.530.40|PF00959|SSF53955 Alide2_2055 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001478|IPR001940|IPR009003|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.10|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494 Alide2_2056 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001915 Peptidase M48 GO:0004222|GO:0006508 G3DSA:3.30.2010.10|PF01435 Alide2_2057 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020948 Phosphate-starvation-induced PsiE-like PF06146 Alide2_2058 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005746|IPR013766|IPR017937|IPR036249 Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0006662|GO:0015035|GO:0045454 G3DSA:2.20.28.140|G3DSA:3.40.30.10|PF00085|PIRSF000077|PR00421|PS00194|SSF52833|TIGR01068 Alide2_2059 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000642|IPR003593|IPR003959|IPR003960|IPR005936|IPR011546|IPR027417|IPR037219 AAA+ ATPase domain|ATPase, AAA-type, conserved site|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase|Peptidase M41|Peptidase M41, FtsH extracellular|Peptidase M41-like|Peptidase, FtsH GO:0004222|GO:0005524|GO:0006508|GO:0008270|GO:0016020|GO:0016021 G3DSA:1.10.8.60|G3DSA:1.20.58.760|G3DSA:3.40.50.300|MF_01458|PF00004|PF01434|PF06480|PS00674|SM00382|SSF140990|SSF52540|TIGR01241 Alide2_2060 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001736|IPR022924|IPR025202|IPR027379 Cardiolipin synthase|Cardiolipin synthase N-terminal|Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824|GO:0008808|GO:0016780|GO:0032049 G3DSA:3.30.870.10|PF13091|PF13396|SM00155|SSF56024|TIGR04265 Alide2_2061 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001270|IPR003593|IPR003959|IPR004176|IPR019489|IPR027417|IPR028299|IPR036628 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp, N-terminal|Clp, N-terminal domain superfamily|ClpA/B family|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0019538 G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|G3DSA:4.10.860.10|PF00004|PF02861|PF07724|PF10431|PR00300|PS00871|SM00382|SM01086|SSF52540|SSF81923 Alide2_2062 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002068|IPR008978 Alpha crystallin/Hsp20 domain|HSP20-like chaperone G3DSA:2.60.40.790|PF00011|SSF49764 Alide2_2063 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061|IPR010093 Putative DNA-binding domain superfamily|SinI-like, DNA-binding domain GO:0003677 G3DSA:1.10.1660.10|PF12728|SSF46955|TIGR01764 Alide2_2065 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003738|IPR036590 SOS response associated peptidase (SRAP)|SOS response associated peptidase-like G3DSA:3.90.1680.10|PF02586|SSF143081 Alide2_2066 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015927|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C G3DSA:2.10.109.10|PF00717|SSF51306 Alide2_2067 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001126|IPR017961|IPR025188 DNA polymerase, Y-family, little finger domain|Domain of unknown function DUF4113|UmuC domain GO:0003684|GO:0006281 G3DSA:1.10.150.20|G3DSA:2.30.40.20|G3DSA:3.30.70.270|PF00817|PF11799|PF13438|SSF56672 Alide2_2068 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.10.2830|SSF109709 Alide2_2069 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic SSF109709 Alide2_2070 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006119|IPR011109|IPR036162|IPR038109 DNA-binding recombinase domain|DNA-binding recombinase domain superfamily|Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:1.10.10.2600|G3DSA:3.40.50.1390|PF00239|PF07508|SM00857|SSF53041 Alide2_2071 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021322 Protein of unknown function DUF2924 PF11149 Alide2_2073 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF12844|SM00530|SSF47413 Alide2_2076 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_2077 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_2078 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012338|IPR015868 Beta-lactamase/transpeptidase-like|Glutaminase GO:0004359|GO:0006541 G3DSA:3.40.710.10|MF_00313|PF04960|SSF56601|TIGR03814 Alide2_2079 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR011650|IPR017439|IPR036264 Amidohydrolase|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|SSF53187|SSF55031|TIGR01891 Alide2_2080 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005828|IPR005829|IPR036259 MFS transporter superfamily|Major facilitator, sugar transporter-like|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|PF00083|PS00216|PS00217|SSF103473 Alide2_2081 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2082 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061 Putative DNA-binding domain superfamily SSF46955 Alide2_2083 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13673|SSF55729 Alide2_2084 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010985|IPR014795 Ribbon-helix-helix|Vibrio phage ICP1, Orf50 GO:0006355 G3DSA:1.20.5.780|PF08681|SSF47598 Alide2_2085 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_2086 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00080|PR00081|SSF51735 Alide2_2087 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 Alide2_2088 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011032|IPR013149|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF16884|SM00829|SSF50129|SSF51735 Alide2_2089 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:3.40.30.110|PF13410|PF13417|SSF47616|SSF52833 Alide2_2090 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011460 Protein of unknown function DUF1566 PF07603 Alide2_2091 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|SSF103473 Alide2_2092 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002081|IPR005101|IPR006050|IPR014729|IPR018394|IPR036134|IPR036155 Cryptochrome/DNA photolyase class 1|Cryptochrome/DNA photolyase class 1, conserved site, C-terminal|Cryptochrome/DNA photolyase, FAD-binding domain|Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily|Cryptochrome/photolyase, N-terminal domain superfamily|DNA photolyase, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:1.10.579.10|G3DSA:1.25.40.80|G3DSA:3.40.50.620|PF00875|PF03441|PR00147|PS00394|PS00691|SSF48173|SSF52425 Alide2_2093 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008457 Copper resistance protein D GO:0016021 PF05425 Alide2_2094 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002629|IPR006276|IPR013215|IPR038071 Cobalamin-independent methionine synthase|Cobalamin-independent methionine synthase MetE, C-terminal/archaeal|Cobalamin-independent methionine synthase MetE, N-terminal|UROD/MetE-like superfamily GO:0003871|GO:0008270|GO:0008652|GO:0009086 G3DSA:3.20.20.210|MF_00172|PF01717|PF08267|PIRSF000382|SSF51726|TIGR01371 Alide2_2095 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2098 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021762 Protein of unknown function DUF3325 PF11804 Alide2_2099 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021557 Protein of unknown function DUF3016 PF11454 Alide2_2100 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF13714|SSF51621 Alide2_2101 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007400|IPR012709 2-methyl-aconitate isomerase PrpF|PrpF protein GO:0016853|GO:0019629 G3DSA:3.10.310.10|PF04303|SSF54506|TIGR02334 Alide2_2102 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000573|IPR001030|IPR012708|IPR015928|IPR015931|IPR036008 2-methylisocitrate dehydratase AcnD, Fe/S-dependent|Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase, swivel GO:0019679 G3DSA:1.10.1440.20|G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.30.499.20|PF00330|PF00694|PR00415|SSF52016|SSF53732|TIGR02333 Alide2_2103 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002020|IPR011278|IPR016142|IPR016143|IPR019810|IPR024176|IPR036969 2-methylcitrate synthase/citrate synthase type I|Citrate synthase|Citrate synthase active site|Citrate synthase superfamily|Citrate synthase, bacterial-type|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain GO:0005737|GO:0006099|GO:0046912 G3DSA:1.10.230.10|G3DSA:1.10.580.10|PF00285|PIRSF001369|PR00143|PS00480|SSF48256|TIGR01800 Alide2_2104 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006683|IPR029069 HotDog domain superfamily|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 Alide2_2105 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010359|IPR010982|IPR018653|IPR026281 Cro/C1-type helix-turn-helix domain|Domain of unknown function DUF2083,transcriptional regulator|HTH-type transcriptional regulator RamB|IrrE N-terminal-like domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0006355|GO:0043565 G3DSA:1.10.260.40|PF01381|PF06114|PF09856|PIRSF019251|SM00530|SSF47413 Alide2_2106 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_2107 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 Alide2_2108 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029058 Alpha/Beta hydrolase fold G3DSA:3.40.50.1820|SSF53474 Alide2_2109 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002942|IPR025708|IPR036986 Heat shock protein 15|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0003677|GO:0003723|GO:0003727|GO:0034605|GO:0043023 G3DSA:3.10.290.10|PF01479|PIRSF016821|SM00363|SSF55174 Alide2_2110 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR013727|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00387|SM00388|SSF47384|SSF55874 Alide2_2111 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 Alide2_2112 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2113 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009936 Protein of unknown function DUF1468 PF07331 Alide2_2114 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002823 Protein of unknown function DUF112, transmembrane PF01970 Alide2_2115 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016582 D-(-)-3-hydroxybutyrate oligomer hydrolase, putative GO:0005615|GO:0019605|GO:0047989 PF10605|PIRSF011409 Alide2_2116 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007461 Ysc84 actin-binding domain PF04366 Alide2_2118 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007272 Sulphur transport domain PF04143 Alide2_2119 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 Alide2_2120 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001015|IPR019772 Ferrochelatase|Ferrochelatase, active site GO:0004325|GO:0006783 G3DSA:3.40.50.1400|MF_00323|PF00762|PS00534|SSF53800|TIGR00109 Alide2_2121 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006439|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily GO:0016787 G3DSA:1.20.120.1600|G3DSA:3.40.50.1000|PF13419|PR00413|SSF56784|TIGR01549 Alide2_2122 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR004014|IPR006068|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR036412 Cation-transporting P-type ATPase, C-terminal|Cation-transporting P-type ATPase, N-terminal|HAD superfamily|HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0016021 G3DSA:1.20.1110.10|G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00689|PF00690|PF00702|PR00119|PR00121|PS00154|SM00831|SSF56784|SSF81653|SSF81660|SSF81665|TIGR01494 Alide2_2123 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 Alide2_2124 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000277|IPR006235|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|O-acetylhomoserine/O-acetylserine sulfhydrylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006520|GO:0016765|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|SSF53383|TIGR01326 Alide2_2125 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644 CBS domain G3DSA:3.10.580.10|PF00571|SM00116|SSF54631 Alide2_2126 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000453|IPR020541|IPR035904 Chorismate synthase|Chorismate synthase AroC superfamily|Chorismate synthase, conserved site GO:0004107|GO:0009073 G3DSA:3.60.150.10|MF_00300|PF01264|PIRSF001456|PS00787|PS00788|PS00789|SSF103263|TIGR00033 Alide2_2127 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003796|IPR005144 ATP-cone domain|Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 MF_00440|PF03477|TIGR00244 Alide2_2128 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001085|IPR015421|IPR015422|IPR015424|IPR019798|IPR039429 Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Serine hydroxymethyltransferase|Serine hydroxymethyltransferase, pyridoxal phosphate binding site|Serine hydroxymethyltransferase-like domain GO:0003824|GO:0004372|GO:0019264|GO:0030170|GO:0035999 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00051|PF00464|PIRSF000412|PS00096|SSF53383 Alide2_2129 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 Alide2_2130 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006665|IPR008023|IPR036737 OmpA-like domain|OmpA-like domain superfamily|Protein of unknown function DUF748 PF00691|PF05359|SSF103088 Alide2_2131 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007139 Protein of unknown function DUF349 PF03993 Alide2_2132 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001900|IPR003029|IPR004476|IPR011129|IPR011805|IPR012340|IPR013223|IPR022966|IPR022967 Cold shock domain|Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribonuclease B, N-terminal OB domain|Ribonuclease II/R|Ribonuclease II/R, conserved site|Ribonuclease II/ribonuclease R|Ribonuclease R|S1 domain GO:0003676|GO:0003723|GO:0004518|GO:0004540|GO:0016070 G3DSA:2.40.50.140|MF_01895|PF00575|PF00773|PF08206|PS01175|SM00316|SM00357|SM00955|SSF50249|TIGR00358|TIGR02063 Alide2_2133 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735 Alide2_2134 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009056|IPR024167|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 G3DSA:1.10.760.10|PF00034|PIRSF000005|SSF46626 Alide2_2135 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009056|IPR014353|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0009055|GO:0016020|GO:0016614|GO:0020037 G3DSA:1.10.760.10|PF00034|PF13442|PIRSF000018|SSF46626 Alide2_2136 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013766|IPR036249 Thioredoxin domain|Thioredoxin-like superfamily GO:0045454 G3DSA:3.40.30.10|PF00085|SSF52833 Alide2_2137 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003728|IPR028989|IPR035956 Ribosome maturation factor RimP|Ribosome maturation factor RimP, N-terminal|RimP, N-terminal domain superfamily GO:0042274 MF_01077|PF02576|SSF75420 Alide2_2138 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003029|IPR004087|IPR009019|IPR010213|IPR010214|IPR010995|IPR012340|IPR013735|IPR015946|IPR022967|IPR025249|IPR030842|IPR036555 DNA repair Rad51/transcription factor NusA, alpha-helical|K Homology domain|K homology domain superfamily, prokaryotic type|K homology domain-like, alpha/beta|KH domain, NusA-like|Nucleic acid-binding, OB-fold|NusA, N-terminal domain superfamily|RNA-binding domain, S1|S1 domain|Transcription factor NusA, N-terminal|Transcription termination factor NusA|Transcription termination factor NusA, C-terminal duplication|Transcription termination/antitermination protein NusA, bacterial GO:0000166|GO:0003676|GO:0003700|GO:0003723|GO:0006353|GO:0031554|GO:0031564 G3DSA:1.10.150.20|G3DSA:2.40.50.140|G3DSA:3.30.1480.10|G3DSA:3.30.300.20|MF_00945_B|PF00575|PF08529|PF13184|PF14520|SM00316|SM00322|SSF47794|SSF50249|SSF54814|SSF69705|TIGR01953|TIGR01954 Alide2_2139 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000178|IPR000795|IPR005225|IPR006847|IPR009000|IPR009061|IPR013575|IPR023115|IPR027417|IPR036925 Initiation factor 2 associated domain, bacterial|P-loop containing nucleoside triphosphate hydrolase|Putative DNA-binding domain superfamily|Small GTP-binding protein domain|Transcription factor, GTP-binding domain|Translation initiation factor IF- 2, domain 3|Translation initiation factor IF-2, N-terminal|Translation initiation factor IF-2, domain 3 superfamily|Translation initiation factor aIF-2, bacterial-like|Translation protein, beta-barrel domain superfamily GO:0003743|GO:0003924|GO:0005525|GO:0005622|GO:0006413 G3DSA:2.40.30.10|G3DSA:3.30.56.50|G3DSA:3.40.50.10050|G3DSA:3.40.50.300|MF_00100_B|PF00009|PF04760|PF08364|PF11987|SSF46955|SSF50447|SSF52156|SSF52540|TIGR00231|TIGR00487 Alide2_2140 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000238|IPR015946|IPR023799 K homology domain-like, alpha/beta|Ribosome-binding factor A|Ribosome-binding factor A domain superfamily GO:0006364 G3DSA:3.30.300.20|MF_00003|PD007327|PF02033|SSF89919|TIGR00082 Alide2_2141 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002501|IPR014780|IPR015240|IPR020103|IPR032819 Pseudouridine synthase II, N-terminal|Pseudouridine synthase, catalytic domain superfamily|tRNA pseudouridine synthase II, TruB|tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal|tRNA pseudouridylate synthase B, C-terminal GO:0001522|GO:0003723|GO:0006396|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|MF_01080|PF01509|PF09157|PF16198|SSF55120|TIGR00431 Alide2_2142 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000640|IPR000795|IPR004161|IPR005225|IPR006298|IPR009000|IPR027417|IPR031157|IPR035647 EF-G domain III/V-like|Elongation factor EFG, domain V-like|GTP-binding protein TypA|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu-like, domain 2|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525 G3DSA:2.40.30.10|G3DSA:2.40.50.250|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|PF00009|PF00679|PF03144|PR00315|PS00301|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR01394 Alide2_2143 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007213|IPR029063 Methyltransferase Ppm1/Ppm2/Tcmp|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168|GO:0032259 G3DSA:3.40.50.150|PF04072|SSF53335 Alide2_2144 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029045|IPR032259 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 G3DSA:3.90.226.10|PF16113|SSF52096 Alide2_2146 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|SSF88659|SSF88946|TIGR02937 Alide2_2147 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005297|IPR014558 Lipoprotein repeat|Uncharacterised conserved lipoprotein PF03640|PIRSF029720 Alide2_2148 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000037|IPR020081|IPR023620 Small protein B|SsrA-binding protein|SsrA-binding protein, conserved site GO:0003723 G3DSA:2.40.280.10|MF_00023|PD004488|PF01668|PS01317|SSF74982|TIGR00086 Alide2_2149 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005031|IPR023393 Coenzyme Q-binding protein COQ10, START domain|START-like domain superfamily G3DSA:3.30.530.20|PF03364|SSF55961 Alide2_2150 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005346|IPR016155|IPR037021 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|RnfH protein|RnfH superfamily G3DSA:3.10.20.280|MF_00460|PF03658|SSF54285 Alide2_2151 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025392 Domain of unknown function DUF4124 PF13511 Alide2_2152 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644|IPR001093|IPR005990|IPR013785|IPR015875 Aldolase-type TIM barrel|CBS domain|IMP dehydrogenase / GMP reductase, conserved site|IMP dehydrogenase/GMP reductase|Inosine-5'-monophosphate dehydrogenase GO:0003824|GO:0003938|GO:0006164|GO:0016491|GO:0055114 G3DSA:3.20.20.70|MF_01964|PF00478|PF00571|PIRSF000130|PS00487|SM00116|SM01240|SSF51412|SSF54631|TIGR01302 Alide2_2153 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001674|IPR004739|IPR014729|IPR017926|IPR022310|IPR022955|IPR029062 Class I glutamine amidotransferase-like|GMP synthase|GMP synthase, C-terminal|GMP synthase, glutamine amidotransferase|Glutamine amidotransferase|NAD/GMP synthase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003922|GO:0005524|GO:0006164|GO:0006177 G3DSA:3.30.300.10|G3DSA:3.40.50.620|G3DSA:3.40.50.880|MF_00344|PF00117|PF00958|PF02540|SSF52317|SSF52402|SSF54810|TIGR00884|TIGR00888 Alide2_2154 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_2155 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_2156 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 Alide2_2157 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF02899|SSF56349 Alide2_2159 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021341 Protein of unknown function DUF2958 PF11171 Alide2_2160 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026325 Protein of unknown function DUF932 PF06067 Alide2_2161 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003115|IPR036086 ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily G3DSA:1.10.10.2830|G3DSA:3.90.1530.30|PF02195|SM00470|SSF109709|SSF110849 Alide2_2164 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001802|IPR006121|IPR011795|IPR036163 Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|Mercuric transport protein periplasmic component|Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0015097|GO:0015694|GO:0030001|GO:0042597|GO:0045340|GO:0046689|GO:0046872 G3DSA:3.30.70.100|PF00403|PR00946|SSF55008|TIGR02052 Alide2_2165 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 PF02411 Alide2_2166 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061|IPR011794|IPR015358 Hg(II)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain superfamily|Transcription regulator MerR, DNA binding GO:0003677|GO:0006355|GO:0045340|GO:0046689 G3DSA:1.10.1660.10|PF00376|PF09278|PR00040|PS00552|SM00422|SSF46955|TIGR02051 Alide2_2167 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_2169 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007948 Protein of unknown function DUF736 PF05284 Alide2_2170 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_2171 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021341 Protein of unknown function DUF2958 PF11171 Alide2_2172 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_2173 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_2174 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018754 Protein of unknown function DUF2285 PF10074 Alide2_2175 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061 Putative DNA-binding domain superfamily PF12728|SSF46955 Alide2_2176 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018777 Replication initiator protein A PF10134 Alide2_2177 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002586|IPR027417 CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF01656|PIRSF009320|SSF52540 Alide2_2178 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010985 Ribbon-helix-helix GO:0006355 SSF47598 Alide2_2179 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021263 Protein of unknown function DUF2840 PF11000 Alide2_2180 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019533|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S26 G3DSA:2.10.109.10|PF10502|SSF51306 Alide2_2181 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021795 Protein of unknown function DUF3363 PF11843 Alide2_2182 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002355|IPR008972|IPR011706|IPR011707|IPR019546 Cupredoxin|Multicopper oxidase, copper-binding site|Multicopper oxidase, type 2|Multicopper oxidase, type 3|Twin-arginine translocation pathway, signal sequence, bacterial/archaeal GO:0005507|GO:0016491|GO:0055114 G3DSA:2.60.40.420|PF07731|PF07732|PS00080|SSF49503|TIGR01409 Alide2_2184 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025421 Protein of unknown function DUF4148 PF13663 Alide2_2185 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003660|IPR003661|IPR004358|IPR006290|IPR036097|IPR036890 HAMP domain|Heavy metal sensor kinase|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0007165|GO:0016020|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00304|SM00387|SM00388|SSF47384|SSF55874|TIGR01386 Alide2_2186 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR006291|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcriptional regulatory protein PcoR, heavy metal response|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172|TIGR01387 Alide2_2187 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001117|IPR002355|IPR006376|IPR008972|IPR011706|IPR011707|IPR033138 Copper-resistance protein CopA|Cupredoxin|Multicopper oxidase, copper-binding site|Multicopper oxidase, type 1|Multicopper oxidase, type 2|Multicopper oxidase, type 3|Multicopper oxidases, conserved site GO:0005507|GO:0016491|GO:0042597|GO:0055114 G3DSA:2.60.40.420|PF00394|PF07731|PF07732|PS00079|PS00080|SSF49503|TIGR01480 Alide2_2188 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007939|IPR036709 Autotransporter beta-domain superfamily|Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 PF05275|SSF103515 Alide2_2189 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000923|IPR008972 Blue (type 1) copper domain|Cupredoxin GO:0005507|GO:0009055 G3DSA:2.60.40.420|PF00127|SSF49503 Alide2_2190 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021647 Copper binding periplasmic protein CusF G3DSA:2.40.50.320|PF11604 Alide2_2192 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021682 Protein of unknown function DUF2933 PF11666 Alide2_2193 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007318 Phospholipid methyltransferase G3DSA:1.20.120.1630|PF04191 Alide2_2195 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006121|IPR017969|IPR036163 Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site GO:0030001|GO:0046872 G3DSA:3.30.70.100|PF00403|PS01047|SSF55008 Alide2_2196 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024501|IPR029058 Alpha/Beta hydrolase fold|Protein of unknown function DUF3141 G3DSA:3.40.50.1820|PF11339|SSF53474 Alide2_2197 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009056|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|SSF46626 Alide2_2198 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036412 HAD superfamily|HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0006812|GO:0016021|GO:0019829 G3DSA:2.70.150.20|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00702|PR00119|PR00943|PS00154|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525 Alide2_2201 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954 Alide2_2202 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR021647|IPR032317 Copper binding periplasmic protein CusF|RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|G3DSA:2.40.50.320|PF11604|PF16576|SSF111369|TIGR01730 Alide2_2203 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR004763|IPR027463 Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006812|GO:0008324|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00914 Alide2_2205 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_2206 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_2208 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|PF14659|SSF56349 Alide2_2209 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002020|IPR010953|IPR016142|IPR016143|IPR019810|IPR024176|IPR036969 Citrate synthase|Citrate synthase active site|Citrate synthase superfamily|Citrate synthase, bacterial-type|Citrate synthase, type I|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain GO:0004108|GO:0005737|GO:0006099|GO:0046912 G3DSA:1.10.230.10|G3DSA:1.10.580.10|G3DSA:2.20.28.60|PF00285|PIRSF001369|PR00143|PS00480|SSF48256|TIGR01798 Alide2_2210 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005631|IPR036714 Flavinator of succinate dehydrogenase|Flavinator of succinate dehydrogenase superfamily G3DSA:1.10.150.250|PF03937|SSF109910 Alide2_2211 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004489|IPR009051|IPR012675|IPR017900|IPR025192|IPR036010 2Fe-2S ferredoxin-like superfamily|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Alpha-helical ferredoxin|Beta-grasp domain superfamily|Succinate dehydogenase/fumarate reductase N-terminal|Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0009055|GO:0016491|GO:0051536|GO:0055114 G3DSA:1.10.1060.10|G3DSA:3.10.20.30|PF13085|PF13534|PS00198|SSF46548|SSF54292|TIGR00384 Alide2_2212 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003952|IPR003953|IPR011281|IPR014006|IPR015939|IPR027477|IPR036188|IPR037099 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily|Fumarate reductase/succinate dehydrogenase, FAD-binding site|Succinate dehydrogenase, flavoprotein subunit|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily|Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0006099|GO:0016491|GO:0016627|GO:0022900|GO:0050660|GO:0055114 G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:3.90.700.10|G3DSA:4.10.80.40|PF00890|PF02910|PIRSF000171|PR00411|PS00504|SSF46977|SSF51905|SSF56425|TIGR01812|TIGR01816 Alide2_2213 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000701|IPR014312|IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit|Succinate dehydrogenase, hydrophobic membrane anchor|Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0000104|GO:0006099|GO:0016020|GO:0016021|GO:0016627|GO:0020037 G3DSA:1.20.1300.10|PF01127|PIRSF000169|SSF81343|TIGR02968 Alide2_2214 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000701|IPR014314|IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit|Succinate dehydrogenase, cytochrome b556 subunit|Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0000104|GO:0006099|GO:0016020|GO:0016627|GO:0045281 G3DSA:1.20.1300.10|PF01127|PIRSF000178|SSF81343|TIGR02970 Alide2_2215 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288 Alide2_2216 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001236|IPR001557|IPR010945|IPR015955|IPR022383|IPR036291 L-lactate/malate dehydrogenase|Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal|Lactate/malate dehydrogenase, C-terminal|Lactate/malate dehydrogenase, N-terminal|Malate dehydrogenase, type 2|NAD(P)-binding domain superfamily GO:0003824|GO:0005975|GO:0006108|GO:0016491|GO:0016615|GO:0016616|GO:0019752|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.110.10|MF_01517|PF00056|PF02866|PIRSF000102|SSF51735|SSF56327|TIGR01759 Alide2_2217 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023149|IPR023506|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|Trans-aconitate 2-methyltransferase|Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 G3DSA:1.10.150.290|G3DSA:3.40.50.150|MF_00560|PF13649|SSF53335 Alide2_2219 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001030|IPR004406|IPR015928|IPR015929|IPR015931|IPR015932|IPR015933|IPR018136|IPR036008|IPR036288 Aconitase B|Aconitase B, HEAT-like domain|Aconitase B, HEAT-like domain superfamily|Aconitase B, swivel|Aconitase family, 4Fe-4S cluster binding site|Aconitase, domain 2|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase, swivel GO:0003994|GO:0005829|GO:0006099|GO:0051539 G3DSA:1.25.40.310|G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PF06434|PF11791|PIRSF036687|PS00450|PS01244|SSF52016|SSF53732|SSF74778|TIGR00117 Alide2_2220 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2221 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR036250 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0055114 G3DSA:1.20.140.10|G3DSA:2.40.110.20|PF00441|PF02770|PS00073|SSF47203|SSF56645 Alide2_2222 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2223 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_2224 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001100|IPR004099|IPR006322|IPR012999|IPR016156|IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Glutathione reductase, eukaryote/bacterial|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0004362|GO:0006749|GO:0009055|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0050661|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|SSF51905|SSF55424|TIGR01421 Alide2_2225 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001041|IPR002888|IPR006058|IPR012675|IPR036010|IPR036884 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|[2Fe-2S]-binding|[2Fe-2S]-binding domain superfamily GO:0009055|GO:0016491|GO:0046872|GO:0051536|GO:0051537|GO:0055114 G3DSA:1.10.150.120|G3DSA:3.10.20.30|PF00111|PF01799|PS00197|SSF47741|SSF54292 Alide2_2226 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000674|IPR008274|IPR036856|IPR037165 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead|Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.365.10|G3DSA:3.90.1170.50|PF01315|PF02738|SM01008|SSF54665|SSF56003 Alide2_2227 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002346|IPR005107|IPR016167|IPR016169|IPR036318|IPR036683 CO dehydrogenase flavoprotein, C-terminal|CO dehydrogenase flavoprotein, C-terminal domain superfamily|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.390.50|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF00941|SM01092|SSF55447|SSF56176 Alide2_2228 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR011704|IPR027417 AAA+ ATPase domain|ATPase, dynein-related, AAA domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF07728|SM00382|SSF52540 Alide2_2229 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008912|IPR011195|IPR036465 Uncharacterised conserved protein UCP010256|Uncharacterised protein family CoxE-like|von Willebrand factor A-like domain superfamily G3DSA:3.40.50.410|PF05762|PIRSF010256|SSF53300 Alide2_2230 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010419|IPR023393 Carbon monoxide dehydrogenase subunit G|START-like domain superfamily G3DSA:3.30.530.20|PF06240|SSF55961 Alide2_2231 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003777|IPR027051 XdhC Rossmann domain|XdhC- CoxI G3DSA:3.40.50.720|PF02625|PF13478 Alide2_2232 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025877|IPR029044 MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF12804|SSF53448 Alide2_2235 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002937|IPR036188 Amine oxidase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.60|G3DSA:3.90.660.50|PF01593|PR00419|SSF51905 Alide2_2236 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD PF03706|TIGR00374 Alide2_2237 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 Alide2_2238 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001539|IPR032525 Peptidase U32|Peptidase family U32, C-terminal GO:0006508|GO:0008233 G3DSA:2.40.30.10|PF01136|PF16325|PS01276 Alide2_2239 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029058 Alpha/Beta hydrolase fold SSF53474 Alide2_2240 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_2242 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002559|IPR008490 Transposase InsH, N-terminal|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|PF05598 Alide2_2243 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR002197|IPR009057|IPR011006 CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0043565 G3DSA:1.10.10.60|G3DSA:3.40.50.2300|PF00072|PF02954|PR01590|SM00448|SSF46689|SSF52172 Alide2_2244 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 Alide2_2245 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002994 Surfeit locus 1/Shy1 GO:0016020 PF02104 Alide2_2246 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005171|IPR014210 Cytochrome C oxidase subunit IV, prokaryotes|Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 PF03626|TIGR02847 Alide2_2247 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000298|IPR013833|IPR014206|IPR035973 Cytochrome c oxidase subunit III-like|Cytochrome c oxidase subunit III-like superfamily|Cytochrome c oxidase, subunit III, 4-helical bundle|Cytochrome o ubiquinol oxidase, subunit III GO:0004129|GO:0005886|GO:0008827|GO:0015002|GO:0016020|GO:0019646|GO:0022904 G3DSA:1.20.120.80|PF00510|SSF81452|TIGR02842 Alide2_2248 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000883|IPR014207|IPR023615|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I, copper-binding site|Cytochrome c oxidase-like, subunit I superfamily|Cytochrome o ubiquinol oxidase, subunit I GO:0004129|GO:0009060|GO:0016021|GO:0016682|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|PR01165|PS00077|SSF81442|TIGR02843 Alide2_2249 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002429|IPR006333|IPR008972|IPR010514|IPR036257 COX aromatic rich motif|Cupredoxin|Cytochrome C oxidase subunit II, transmembrane domain superfamily|Cytochrome c oxidase subunit II-like C-terminal|Cytochrome o ubiquinol oxidase subunit II GO:0004129|GO:0005507|GO:0008827|GO:0016020|GO:0016021|GO:0016682|GO:0022900|GO:0055114 G3DSA:1.10.287.90|G3DSA:2.60.40.420|PF00116|PF06481|PIRSF000292|SSF49503|SSF81464|TIGR01433 Alide2_2250 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|SSF103473 Alide2_2251 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006260|IPR014161 Tol-Pal system, TolA|TonB/TolA, C-terminal GO:0005215|GO:0016021|GO:0043213 G3DSA:3.30.1150.10|PF13103|SSF101447|SSF74653|TIGR01352|TIGR02794 Alide2_2252 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 G3DSA:3.30.420.270|PF02472 Alide2_2253 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002898|IPR014163 MotA/TolQ/ExbB proton channel|Tol-Pal system, TolQ GO:0016021|GO:0043213 MF_02202|PF01618|TIGR02796 Alide2_2254 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006683|IPR006684|IPR029069 Acyl-CoA thioester hydrolase YbgC/YbaW family|HotDog domain superfamily|Thioesterase domain GO:0016787 G3DSA:3.10.129.10|PF03061|PIRSF003230|SSF54637|TIGR00051 Alide2_2255 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004838|IPR004839|IPR015421|IPR015424 Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|PF00155|PS00105|SSF53383 Alide2_2256 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006027|IPR011605|IPR035926 NusB antitermination factor|NusB-like superfamily|NusB/RsmB/TIM44 GO:0003723|GO:0006353|GO:0006355 G3DSA:1.10.940.10|MF_00073|PF01029|SSF48013|TIGR01951 Alide2_2257 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002180|IPR034964|IPR036467 Lumazine synthase|Lumazine/riboflavin synthase|Lumazine/riboflavin synthase superfamily GO:0000906|GO:0009231|GO:0009349 G3DSA:3.40.50.960|MF_00178|PF00885|SSF52121|TIGR00114 Alide2_2258 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000422|IPR017945|IPR032677|IPR036144 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB|DHBP synthase RibB-like alpha/beta domain superfamily|GTP cyclohydrolase II|RibA-like superfamily GO:0008686|GO:0009231 G3DSA:3.40.50.10990|G3DSA:3.90.870.10|MF_00180|PF00925|PF00926|PIRSF001259|SSF142695|SSF55821|TIGR00506 Alide2_2259 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001041|IPR012675|IPR036010 2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily GO:0009055|GO:0051536 G3DSA:3.10.20.30|PF00111|SSF54292 Alide2_2260 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|SSF55811 Alide2_2261 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00080|PR00081|SM00822|SSF51735 Alide2_2262 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006334|IPR007370|IPR014746 Glutamate--cysteine ligase|Glutamate--cysteine ligase, monofunctional|Glutamine synthetase/guanido kinase, catalytic domain GO:0003824|GO:0004357|GO:0006750 G3DSA:3.30.590.20|MF_00578|PF04262|SSF55931|TIGR01434 Alide2_2263 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032692 Integral membrane protein YccS, N-terminal PF12805|PF13515 Alide2_2265 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006175|IPR035959 RutC-like superfamily|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|SSF55298 Alide2_2266 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007419|IPR017224|IPR023753|IPR036188 BFD-like [2Fe-2S]-binding domain|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 G3DSA:1.10.10.1100|G3DSA:3.50.50.60|PF04324|PF07992|PIRSF037495|PR00368|PR00411|SSF51905 Alide2_2267 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 G3DSA:3.10.20.440|PF13510|SSF54292 Alide2_2268 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|SSF54373 Alide2_2269 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2270 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2271 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006073|IPR016478|IPR019991|IPR023179|IPR027417 GTP binding domain|GTP-binding protein, orthogonal bundle domain superfamily|GTP-binding protein, ribosome biogenesis|GTPase, MTG1|P-loop containing nucleoside triphosphate hydrolase GO:0005525 G3DSA:1.10.1580.10|G3DSA:3.40.50.300|PF01926|PIRSF006230|SSF52540|TIGR03596 Alide2_2272 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily SSF50998 Alide2_2273 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006145|IPR006224|IPR020103 Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|PF00849|PS01129|SSF55120 Alide2_2275 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003156|IPR038763 DHH phosphoesterase superfamily|DHHA1 domain GO:0003676 G3DSA:3.10.310.30|PF02272|SSF64182 Alide2_2276 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010290|IPR036259 MFS transporter superfamily|Transmembrane secretion effector G3DSA:1.20.1250.20|PF05977|SSF103473 Alide2_2277 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016071|IPR035437 SNase-like, OB-fold superfamily|Staphylococcal nuclease (SNase-like), OB-fold G3DSA:2.40.50.90|PF00565|SM00318|SSF50199 Alide2_2278 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620|IPR004626 EamA domain|RarD protein GO:0005887|GO:0016020|GO:0016021 PF00892|SSF103481|TIGR00688 Alide2_2279 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000748|IPR006145|IPR018496|IPR020103 Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866 G3DSA:3.30.70.1560|G3DSA:3.30.70.580|PF00849|PS01149|SSF55120|TIGR00093 Alide2_2280 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011055|IPR016047 Duplicated hybrid motif|Peptidase M23 G3DSA:2.60.40.1590|G3DSA:2.70.70.10|PF01551|SSF51261 Alide2_2281 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000362|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083 Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0006099|GO:0016829 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|PF00206|PF10415|PR00149|PS00163|SSF48557 Alide2_2282 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005184|IPR025485|IPR038670 Domain of unknown function DUF306, Meta/HslJ|Domain of unknown function DUF4377|HslJ-like superfamily G3DSA:2.40.128.270|PF03724|PF14302 Alide2_2283 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010323|IPR011990 Protein of unknown function DUF924|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.20.58.320|G3DSA:1.25.40.10|PF06041|SSF48452 Alide2_2284 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000924|IPR001412|IPR004514|IPR011035|IPR014729|IPR020056|IPR020058|IPR020059|IPR020061|IPR022861 Aminoacyl-tRNA synthetase, class I, conserved site|Glutamine-tRNA ligase, alpha-bundle domain superfamily|Glutamine-tRNA ligase, bacterial|Glutamine-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Ribosomal protein L25/Gln-tRNA synthetase, N-terminal|Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0004819|GO:0005524|GO:0005737|GO:0006412|GO:0006418|GO:0006425|GO:0043039 G3DSA:1.10.1160.10|G3DSA:2.40.240.10|G3DSA:3.40.50.620|G3DSA:3.90.800.10|MF_00126|PF00749|PF03950|PR00987|PS00178|SSF50715|SSF52374|TIGR00440 Alide2_2286 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001874|IPR018509|IPR036441 Dehydroquinase, class II|Dehydroquinase, class II superfamily|Dehydroquinase, class II, conserved site GO:0003855 G3DSA:3.40.50.9100|MF_00169|PD004527|PF01220|PIRSF001399|PS01029|SSF52304|TIGR01088 Alide2_2287 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR000639|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like GO:0003824 G3DSA:3.40.50.1820|PF12697|PR00111|PR00412|SSF53474 Alide2_2288 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 G3DSA:3.30.160.20|PF00472|PS00745|SSF75620 Alide2_2289 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004183|IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type|Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0008270|GO:0016491|GO:0016701|GO:0055114 G3DSA:3.40.830.10|PF02900|PIRSF006157|SSF53213 Alide2_2290 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003140|IPR029058 Alpha/Beta hydrolase fold|Phospholipase/carboxylesterase/thioesterase GO:0016787 G3DSA:3.40.50.1820|PF02230|SSF53474 Alide2_2291 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021382 Protein of unknown function DUF3014 PF11219 Alide2_2292 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000485|IPR011008|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|SM00344|SSF46785|SSF54909 Alide2_2293 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004660|IPR005474|IPR009014|IPR017600|IPR029061 2-oxo-acid dehydrogenase E1 component homodimeric type|Alpha-ketoglutarate dehydrogenase|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, N-terminal GO:0003824|GO:0016491|GO:0055114 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PIRSF000156|SSF52518|SSF52922|TIGR00759|TIGR03186 Alide2_2294 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain G3DSA:3.90.1300.10|PF01425|SSF75304 Alide2_2295 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2296 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2297 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 Alide2_2298 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_2299 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002204|IPR006115|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|3-hydroxyisobutyrate dehydrogenase-related, conserved site|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PS00895|SSF48179|SSF51735 Alide2_2300 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|SSF51735 Alide2_2301 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010737|IPR031475|IPR037051 Four-carbon acid sugar kinase, C-terminal domain|Four-carbon acid sugar kinase, N-terminal domain|Four-carbon acid sugar kinase, N-terminal domain superfamily G3DSA:3.40.50.10840|G3DSA:3.40.980.20|PF07005|PF17042|SSF142764 Alide2_2302 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001303|IPR036409 Class II aldolase/adducin N-terminal|Class II aldolase/adducin N-terminal domain superfamily G3DSA:3.40.225.10|PF00596|SM01007|SSF53639 Alide2_2303 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013022|IPR026040|IPR036237 Hydroxypyruvate isomerase-like|Xylose isomerase-like superfamily|Xylose isomerase-like, TIM barrel domain G3DSA:3.20.20.150|PF01261|PIRSF006241|SSF51658 Alide2_2304 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010384|IPR024079 Metallopeptidase, catalytic domain superfamily|MtfA family GO:0008237 G3DSA:1.10.472.150|G3DSA:3.40.390.10|PF06167|SSF55486 Alide2_2305 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004843|IPR010138 Calcineurin-like phosphoesterase domain, ApaH type|UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462|GO:0016787 MF_00575|PF00149|SSF56300 Alide2_2306 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002130|IPR020892|IPR024936|IPR029000 Cyclophilin-like domain superfamily|Cyclophilin-type peptidyl-prolyl cis-trans isomerase|Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0000413|GO:0003755|GO:0006457 G3DSA:2.40.100.10|PF00160|PIRSF001467|PR00153|PS00170|SSF50891 Alide2_2307 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002130|IPR020892|IPR024936|IPR029000 Cyclophilin-like domain superfamily|Cyclophilin-type peptidyl-prolyl cis-trans isomerase|Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0000413|GO:0003755|GO:0006457 G3DSA:2.40.100.10|PF00160|PIRSF001467|PR00153|PS00170|SSF50891 Alide2_2308 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005490|IPR038063 L,D-transpeptidase catalytic domain|L,D-transpeptidase catalytic domain-like GO:0016740 G3DSA:2.40.440.10|PF03734|SSF141523 Alide2_2309 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990|IPR019734|IPR032710 NTF2-like domain superfamily|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|G3DSA:3.10.450.50|PF13414|PF13432|SM00028|SSF48452|SSF54427 Alide2_2310 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009080|IPR014729|IPR015273|IPR015803|IPR024909|IPR032678 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Cysteine-tRNA ligase|Cysteinyl-tRNA synthetase, class Ia, DALR|Cysteinyl-tRNA synthetase/mycothiol ligase|Rossmann-like alpha/beta/alpha sandwich fold|tRNA synthetases class I, catalytic domain GO:0000166|GO:0004812|GO:0004817|GO:0005524|GO:0005737|GO:0006418|GO:0006423 G3DSA:1.20.120.640|G3DSA:3.40.50.620|MF_00041|PF01406|PF09190|PR00983|SM00840|SSF47323|SSF52374|TIGR00435 Alide2_2311 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003265|IPR011257 DNA glycosylase|HhH-GPD domain GO:0003824|GO:0006281|GO:0006284 G3DSA:1.10.1670.40|G3DSA:1.10.340.30|PF00730|SM00478|SSF48150 Alide2_2312 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001095|IPR029045 Acetyl-CoA carboxylase, alpha subunit|ClpP/crotonase-like domain superfamily GO:0003989|GO:0006633|GO:0009317 G3DSA:3.90.226.10|MF_00823|PF03255|PR01069|SSF52096|TIGR00513 Alide2_2313 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011063|IPR012094|IPR012795|IPR014729|IPR015262 Rossmann-like alpha/beta/alpha sandwich fold|tRNA(Ile)-lysidine synthase|tRNA(Ile)-lysidine synthase , substrate-binding domain|tRNA(Ile)-lysidine synthase, N-terminal|tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 G3DSA:1.20.59.20|G3DSA:3.40.50.620|MF_01161|PF01171|PF09179|SSF52402|SSF82829|TIGR02432 Alide2_2314 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001048|IPR001057|IPR001341|IPR002912|IPR005260|IPR018042|IPR027795|IPR036393 ACT domain|Acetylglutamate kinase-like superfamily|Aspartate kinase|Aspartate kinase, conserved site|Aspartate kinase, monofunctional class|Aspartate/glutamate/uridylate kinase|CASTOR, ACT domain|Glutamate/acetylglutamate kinase GO:0004072|GO:0008652|GO:0009089 G3DSA:3.30.70.260|G3DSA:3.40.1160.10|PF00696|PF01842|PF13840|PIRSF000726|PR00474|PS00324|SSF53633|SSF55021|TIGR00656|TIGR00657 Alide2_2315 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001807|IPR014743 Chloride channel, core|Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 G3DSA:1.10.3080.10|PF00654|PR00762|SSF81340 Alide2_2316 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR013570|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Transcription regulator YsiA, C-terminal GO:0003677 G3DSA:1.10.357.10|PF00440|PF08359|SSF46689|SSF48498 Alide2_2317 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_2318 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003838|IPR025857 ABC transporter permease protein domain|MacB-like periplasmic core domain GO:0016020 PF02687|PF12704 Alide2_2319 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_2320 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002477|IPR011970|IPR023346|IPR031304|IPR036365|IPR036366 Lysozyme-like domain superfamily|Lytic murein transglycosylase|PGBD superfamily|PGBD-like superfamily|Peptidoglycan binding-like|Transglycosylase SLT domain 2 G3DSA:1.10.101.10|G3DSA:1.10.530.10|G3DSA:1.10.8.350|PF01471|PF13406|SSF47090|SSF53955|TIGR02283 Alide2_2321 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012337|IPR013520|IPR013620|IPR023607|IPR036397|IPR038649 Exodeoxyribonuclease I|Exodeoxyribonuclease I, C-terminal|Exonuclease I, SH3-like domain superfamily|Exonuclease, RNase T/DNA polymerase III|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0004529|GO:0006281|GO:0008852 G3DSA:1.20.1280.70|G3DSA:2.30.30.450|G3DSA:3.30.420.10|PF00929|PF08411|PIRSF000977|SM00479|SSF53098 Alide2_2322 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003000|IPR026587|IPR026591|IPR029035 DHS-like NAD/FAD-binding domain superfamily|Sirtuin family|Sirtuin, catalytic core small domain superfamily|Sirtuin, class II GO:0070403 G3DSA:3.30.1600.10|G3DSA:3.40.50.1220|MF_01967|PF02146|SSF52467 Alide2_2323 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002549|IPR003018|IPR029016 GAF domain|GAF-like domain superfamily|Transmembrane protein TqsA-like GO:0005515 G3DSA:3.30.450.40|PF01594|PF13185|SM00065|SSF55781 Alide2_2324 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13302|SSF55729 Alide2_2325 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005765|IPR029057|IPR034332 Phosphoribosyltransferase-like|Uracil phosphoribosyl transferase|Uracil phosphoribosyltransferase, bacterial-type GO:0004845|GO:0006223 G3DSA:3.40.50.2020|MF_01218_B|PF14681|SSF53271|TIGR01091 Alide2_2326 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001926|IPR027278|IPR036052 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase|Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme G3DSA:3.40.50.1100|PF00291|PIRSF006278|SSF53686 Alide2_2327 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002876|IPR017856|IPR026564|IPR029072 Integrase-like, N-terminal|Transcriptional regulator TACO1-like|Transcriptional regulator TACO1-like, domain 3|YebC-like G3DSA:1.10.10.200|G3DSA:3.30.70.980|MF_00693|PF01709|SSF75625 Alide2_2329 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013783|IPR014116|IPR017896|IPR017900|IPR032879 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Cytochrome c oxidase cbb3 type, accessory protein FixG|FixG, C-terminal immunoglobulin-like domain|Immunoglobulin-like fold GO:0016021|GO:0055114 G3DSA:2.60.40.10|PF11614|PF12801|PF13746|PS00198|SSF54862|TIGR02745 Alide2_2330 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 PF01654|PIRSF006446 Alide2_2331 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PF02322|PIRSF000267|TIGR00203 Alide2_2332 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018895 Protein of unknown function DUF2474 PF10617 Alide2_2333 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007300 CidB/LrgB family PF04172 Alide2_2334 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005538 LrgA/CidA family GO:0016021 PF03788 Alide2_2335 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR004839|IPR015421|IPR015422|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 Alide2_2336 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 Alide2_2337 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417|IPR033186 Helicase HerA-like C-terminal|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF05872|SSF52540 Alide2_2338 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002876|IPR017856|IPR026564|IPR029072 Integrase-like, N-terminal|Transcriptional regulator TACO1-like|Transcriptional regulator TACO1-like, domain 3|YebC-like G3DSA:1.10.10.200|G3DSA:3.30.70.980|MF_00693|PF01709|SSF75625|TIGR01033 Alide2_2339 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000115|IPR011054|IPR013815|IPR016185|IPR020560|IPR020561|IPR020562|IPR037123 ATP-grasp fold, subdomain 1|Phosphoribosylglycinamide synthetase|Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain|Phosphoribosylglycinamide synthetase, C-domain|Phosphoribosylglycinamide synthetase, C-domain superfamily|Phosphoribosylglycinamide synthetase, N-terminal|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif GO:0004637|GO:0005524|GO:0009113 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|G3DSA:3.90.600.10|MF_00138|PF01071|PF02843|PF02844|SM01209|SM01210|SSF51246|SSF52440|SSF56059|TIGR00877 Alide2_2340 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001260|IPR018375|IPR036406 Coproporphyrinogen III oxidase, aerobic|Coproporphyrinogen III oxidase, conserved site|Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 G3DSA:3.40.1500.10|MF_00333|PF01218|PIRSF000166|PR00073|PS01021|SSF102886 Alide2_2341 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004394 Protein Iojap/ribosomal silencing factor RsfS G3DSA:3.30.460.10|MF_01477|PF02410|SSF81301|TIGR00090 Alide2_2342 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003742|IPR029026|IPR029028 Alpha/beta knot methyltransferases|RNA methyltransferase RlmH|tRNA (guanine-N1-)-methyltransferase, N-terminal GO:0005737|GO:0006364|GO:0008168 G3DSA:3.40.1280.10|MF_00658|PF02590|PIRSF004505|SSF75217 Alide2_2343 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003697|IPR029001 Inosine triphosphate pyrophosphatase-like|Maf-like protein GO:0047429 G3DSA:3.90.950.10|MF_00528|PF02545|PIRSF006305|SSF52972|TIGR00172 Alide2_2344 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SM00419|SSF46785|SSF51206 Alide2_2345 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003143|IPR009056|IPR011048|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Cytochrome cd1-nitrite reductase, C-terminal domain superfamily|Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|G3DSA:2.140.10.20|PF02239|PF13442|SSF46626|SSF51004 Alide2_2346 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007197|IPR013785|IPR017200|IPR023992 Aldolase-type TIM barrel|Coenzyme PQQ synthesis protein E|Heme D1 biosynthesis, radical SAM protein NirJ|Radical SAM GO:0003824|GO:0051536 G3DSA:3.20.20.70|PF04055|PF13353|PIRSF037420|SSF102114|TIGR04051 Alide2_2347 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.30.70.3460 Alide2_2348 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.30.70.3460 Alide2_2349 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003143|IPR011048 Cytochrome cd1-nitrite reductase, C-terminal domain superfamily|Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily G3DSA:2.140.10.20|PF02239|SSF51004 Alide2_2350 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009056|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|SSF46626 Alide2_2351 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003143|IPR009056|IPR011048|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Cytochrome cd1-nitrite reductase, C-terminal domain superfamily|Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|G3DSA:2.140.10.20|PF02239|PF13442|SSF46626|SSF51004 Alide2_2352 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000878|IPR003043|IPR006366|IPR014776|IPR014777|IPR035996 Tetrapyrrole methylase|Tetrapyrrole methylase superfamily|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|Uroporphiryn-III C-methyltransferase, conserved site|Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354|GO:0055114 G3DSA:3.30.950.10|G3DSA:3.40.1010.10|PF00590|PS00839|SSF53790|TIGR01469 Alide2_2353 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004659|IPR012340|IPR019307|IPR022967 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|RNA-binding protein AU-1/Ribonuclease E/G|Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 G3DSA:2.40.50.140|G3DSA:3.40.1260.20|PF10150|SM00316|SSF50249|TIGR00757 Alide2_2354 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 Alide2_2355 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005119 LysR, substrate-binding G3DSA:3.40.190.10|PF03466|SSF53850 Alide2_2356 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 Alide2_2357 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2358 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 G3DSA:3.40.50.1400|PF01903|SSF53800 Alide2_2359 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005495|IPR030923 LPS export ABC transporter permease LptG|Permease LptG/LptF-related GO:0016021|GO:0043190|GO:0055085 PF03739|TIGR04408 Alide2_2360 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005495|IPR030922|IPR036259 LPS export ABC transporter permease LptF|MFS transporter superfamily|Permease LptG/LptF-related GO:0016021|GO:0043190|GO:0055085 PF03739|SSF103473|TIGR04407 Alide2_2361 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000819|IPR008283|IPR011356|IPR023042 Peptidase M17, leucine aminopeptidase|Peptidase M17, leucine aminopeptidase/peptidase B|Peptidase M17, leucyl aminopeptidase, C-terminal|Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0005737|GO:0006508|GO:0008235|GO:0019538|GO:0030145 G3DSA:3.40.220.10|G3DSA:3.40.630.10|MF_00181|PF00883|PF02789|PR00481|PS00631|SSF52949|SSF53187 Alide2_2362 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007459|IPR036768 DNA polymerase III chi subunit, HolC|DNA polymerase III subunit chi superfamily GO:0003677|GO:0003887|GO:0006260 G3DSA:3.40.50.10110|PF04364|SSF102400 Alide2_2364 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 Alide2_2365 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006139|IPR006140|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|SSF51735|SSF52283 Alide2_2370 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018724 2OG-Fe dioxygenase G3DSA:2.60.120.620|PF10014 Alide2_2371 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:3.40.50.620|PF00582|PIRSF006276|PR01438|SSF52402 Alide2_2372 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012312|IPR012827|IPR016131|IPR035938 Haemerythrin, iron-binding site|Haemerythrin, metal-binding domain|Haemerythrin-like|Hemerythrin-like superfamily GO:0046872 G3DSA:1.20.120.50|PF01814|PS00550|SSF47188|TIGR02481 Alide2_2373 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2374 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020610|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|SSF53901|TIGR01930 Alide2_2375 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735 Alide2_2376 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006145|IPR006224|IPR020103 Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|PF00849|PS01129|SSF55120 Alide2_2377 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR001789|IPR003594|IPR003661|IPR004358|IPR011006|IPR013767|IPR035965|IPR036097|IPR036890 CheY-like superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain|PAS domain superfamily|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain GO:0000155|GO:0000160|GO:0006355|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF00512|PF00989|PF02518|PF13188|PR00344|SM00091|SM00387|SM00388|SM00448|SSF47384|SSF52172|SSF55785|SSF55874|TIGR00229 Alide2_2378 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain G3DSA:3.10.50.40|PF00254|SSF54534 Alide2_2379 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR016032|IPR036388 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 Alide2_2380 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR011712|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 G3DSA:3.30.565.10|PF07730|SM00387|SSF55874 Alide2_2382 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013740|IPR017937|IPR036249 Redoxin|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0016491|GO:0045454 G3DSA:3.40.30.10|PF08534|PS00194|SSF52833 Alide2_2383 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009097 Cyclic phosphodiesterase G3DSA:3.90.1140.10|PF13563|SSF55144 Alide2_2385 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025961 Heavy-metal resistance protein G3DSA:1.20.120.1490|PF13801 Alide2_2386 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027383 Putative zinc-finger G3DSA:1.10.10.1320|PF13490 Alide2_2387 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|SSF88659|SSF88946|TIGR02937 Alide2_2389 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001566|IPR010280|IPR012340|IPR029063|IPR030391 (Uracil-5)-methyltransferase family|23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD|Nucleic acid-binding, OB-fold|RNA methyltransferase TrmA, conserved site|S-adenosyl-L-methionine-dependent methyltransferase GO:0003723|GO:0006396|GO:0008173 G3DSA:2.40.50.140|G3DSA:3.40.1350.30|G3DSA:3.40.50.150|MF_01010|PF05958|PS01231|SSF50249|SSF53335|TIGR00479 Alide2_2390 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001926|IPR011780|IPR036052 D-serine ammonia-lyase|Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0008721|GO:0030170|GO:0046416 G3DSA:3.40.50.1100|MF_01030|PF00291|SSF53686|TIGR02035 Alide2_2391 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001498|IPR015269|IPR020568|IPR035647|IPR036956 EF-G domain III/V-like|Impact, N-terminal|Impact, N-terminal domain superfamily|Ribosomal protein S5 domain 2-type fold|Uncharacterised domain UPF0029, Impact, C-terminal G3DSA:3.30.230.30|PF01205|PF09186|SSF54211|SSF54980 Alide2_2392 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000923|IPR008972|IPR014068|IPR028871 Azurin|Blue (type 1) copper domain|Blue (type 1) copper protein, binding site|Cupredoxin GO:0005507|GO:0009055 G3DSA:2.60.40.420|PD003655|PF00127|PS00196|SSF49503|TIGR02695 Alide2_2393 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006638|IPR007197|IPR013704|IPR020612|IPR022946|IPR023404|IPR024560 Elp3/MiaB/NifB|Methylthiotransferase, conserved site|Radical SAM|Radical SAM, alpha/beta horseshoe|Uncharacterised protein family UPF0313|Uncharacterised protein family UPF0313, C-terminal|Uncharacterised protein family UPF0313, N-terminal GO:0003824|GO:0051536|GO:0051539 G3DSA:3.80.30.20|MF_01251|PF04055|PF08497|PF11842|PS01278|SM00729|SSF102114|TIGR03904 Alide2_2394 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000796|IPR004838|IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Aspartate/other aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006520|GO:0008483|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PR00799|PS00105|SSF53383 Alide2_2395 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001650|IPR001943|IPR004807|IPR006935|IPR014001|IPR024759|IPR027417|IPR036876 Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|UVR domain|UVR domain superfamily|UvrABC system, subunit B|UvrB, YAD/RRR-motif-containing domain GO:0003677|GO:0005515|GO:0005524|GO:0006289|GO:0009380|GO:0016787|GO:0016887 G3DSA:3.40.50.300|G3DSA:4.10.860.10|MF_00204|PF00271|PF02151|PF04851|PF12344|SM00487|SM00490|SSF46600|SSF52540|TIGR00631 Alide2_2396 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000944|IPR010242|IPR036388|IPR036390 Transcription factor HTH, IscR|Transcription regulator Rrf2-type|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003690|GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF02082|SSF46785|TIGR00738|TIGR02010 Alide2_2397 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000192|IPR010240|IPR015421|IPR015422|IPR015424|IPR016454|IPR020578 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Cysteine desulfurase|Cysteine desulfurase IscS|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0030170|GO:0031071|GO:0044571 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00331|PF00266|PIRSF005572|PS00595|SSF53383|TIGR02006 Alide2_2398 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002871|IPR011339 ISC system FeS cluster assembly, IscU scaffold|NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 G3DSA:3.90.1010.10|PF01592|SSF82649|TIGR01999 Alide2_2399 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000361|IPR011302|IPR016092|IPR017870|IPR035903 FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion, C-terminal, conserved site|HesB-like domain superfamily|Iron-binding protein IscA, proteobacteria GO:0005198|GO:0005506|GO:0051536|GO:0097428 G3DSA:2.60.300.12|PF01521|PS01152|SSF89360|TIGR00049|TIGR02011 Alide2_2400 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001623|IPR004640|IPR009073|IPR036386|IPR036869 Chaperone J-domain superfamily|Co-chaperone Hsc20|Co-chaperone HscB, C-terminal oligomerisation domain|DnaJ domain|HscB, C-terminal domain superfamily GO:0001671|GO:0051087|GO:0051259|GO:0097428 G3DSA:1.10.287.110|G3DSA:1.20.1280.20|MF_00682|PF07743|SM00271|SSF46565|SSF47144|TIGR00714 Alide2_2401 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010236|IPR013126|IPR018181|IPR029047|IPR029048 Heat shock protein 70 family|Heat shock protein 70, conserved site|Heat shock protein 70kD, C-terminal domain superfamily|Heat shock protein 70kD, peptide-binding domain superfamily|ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 G3DSA:1.20.1270.10|G3DSA:2.60.34.10|G3DSA:3.30.420.40|G3DSA:3.90.640.10|MF_00679|PF00012|PR00301|PS00297|PS00329|PS01036|SSF100920|SSF100934|SSF53067|TIGR01991 Alide2_2402 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001041|IPR001055|IPR011536|IPR012675|IPR018298|IPR036010 2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Adrenodoxin|Adrenodoxin, iron-sulphur binding site|Beta-grasp domain superfamily|Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051536|GO:0051537 G3DSA:3.10.20.30|PF00111|PR00355|PS00814|SSF54292|TIGR02007 Alide2_2403 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006054|IPR006309|IPR012337|IPR013520|IPR036397 DNA polymerase 3, epsilon subunit|DNA polymerase III epsilon subunit, exonuclease domain|Exonuclease, RNase T/DNA polymerase III|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0003677|GO:0003887|GO:0006260 G3DSA:3.30.420.10|PF00929|SM00479|SSF53098|TIGR00573|TIGR01406 Alide2_2404 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905 Alide2_2405 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 PF05957 Alide2_2406 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009937 Putative Actinobacterial Holin-X, holin superfamily III PF07332 Alide2_2408 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001295|IPR005719|IPR005720|IPR012135|IPR013785 Aldolase-type TIM barrel|Dihydroorotate dehydrogenase domain|Dihydroorotate dehydrogenase, class 1/ 2|Dihydroorotate dehydrogenase, class 2|Dihydroorotate dehydrogenase, conserved site GO:0003824|GO:0004152|GO:0005737|GO:0006207|GO:0006222|GO:0016020|GO:0016627|GO:0055114 G3DSA:3.20.20.70|MF_00225|PF01180|PIRSF000164|PS00911|PS00912|SSF51395|TIGR01036 Alide2_2409 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004788|IPR020672|IPR037171 NagB/RpiA transferase-like|Ribose 5-phosphate isomerase, type A|Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 G3DSA:3.30.70.260|G3DSA:3.40.50.1360|MF_00170|PF06026|SSF100950|SSF75445|TIGR00021 Alide2_2410 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002109|IPR025392|IPR036249 Domain of unknown function DUF4124|Glutaredoxin|Thioredoxin-like superfamily GO:0009055|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00462|PF13511|SSF52833 Alide2_2411 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001567|IPR024077 Neurolysin/Thimet oligopeptidase, domain 2|Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 G3DSA:1.10.1370.10|G3DSA:1.10.1370.40|PF01432|SSF55486 Alide2_2412 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000672|IPR020630|IPR020631|IPR020867|IPR036291 NAD(P)-binding domain superfamily|Tetrahydrofolate dehydrogenase/cyclohydrolase|Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0004488|GO:0055114 G3DSA:3.40.50.10860|G3DSA:3.40.50.720|MF_01576|PF00763|PF02882|PR00085|PS00766|PS00767|SSF51735|SSF53223 Alide2_2413 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR016032|IPR036388 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 Alide2_2414 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR001610|IPR003594|IPR003661|IPR004358|IPR013767|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAC motif|PAS domain|PAS domain superfamily|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0006355|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF00989|PF02518|PR00344|SM00086|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229 Alide2_2415 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004660|IPR005474|IPR009014|IPR029061 2-oxo-acid dehydrogenase E1 component homodimeric type|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, N-terminal GO:0003824|GO:0016491|GO:0055114 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PIRSF000156|SSF52518|SSF52922|TIGR00759 Alide2_2416 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR001078|IPR003016|IPR004167|IPR006256|IPR011053|IPR023213|IPR036625 2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain superfamily|Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex|E3-binding domain superfamily|Peripheral subunit-binding domain|Single hybrid motif GO:0004742|GO:0006096|GO:0016746|GO:0045254 G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|SSF47005|SSF51230|SSF52777|TIGR01348 Alide2_2417 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR001100|IPR003016|IPR004099|IPR006258|IPR011053|IPR012999|IPR016156|IPR023753|IPR036188 2-oxo acid dehydrogenase, lipoyl-binding site|Biotin/lipoyl attachment|Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain|Single hybrid motif GO:0004148|GO:0009055|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0055114 G3DSA:2.40.50.100|G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF00364|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|PS00189|SSF51230|SSF51905|SSF55424|TIGR01350 Alide2_2420 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2421 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003812|IPR036597 Fido domain|Fido-like domain superfamily G3DSA:1.10.3290.10|PF02661|SSF140931 Alide2_2422 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2426 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008878 Transposase IS66, Orf2 PF05717 Alide2_2427 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004291|IPR024463|IPR024474|IPR039552 Transposase IS66, C-terminal|Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66 PF03050|PF13005|PF13007|PF13817 Alide2_2429 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527|SSF46689 Alide2_2431 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2432 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019614|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|S-adenosylmethionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF10672|SSF53335 Alide2_2434 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006115|IPR006183|IPR008927|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0004616|GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PR00076|SSF48179|SSF51735 Alide2_2436 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002740|IPR015947 EVE domain|PUA-like superfamily G3DSA:3.10.590.10|PF01878|SSF88697 Alide2_2437 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007341 Transglycosylase-associated protein GO:0016021 PF04226 Alide2_2438 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000064|IPR038765 Endopeptidase, NLPC/P60 domain|Papain-like cysteine peptidase superfamily G3DSA:3.90.1720.10|PF00877|SSF54001 Alide2_2439 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002293|IPR004840|IPR004841 Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I GO:0006865|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1740.10|PF00324|PIRSF006060|PS00218 Alide2_2440 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004638|IPR011701|IPR036259 Drug resistance transporter EmrB/QacA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|PR01036|SSF103473|TIGR00711 Alide2_2441 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR001610|IPR001633|IPR006189|IPR029787|IPR035919|IPR035965 CHASE domain|EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS domain superfamily G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.450.350|G3DSA:3.30.70.270|PF00563|PF00990|PF03924|PF13426|SM00052|SM00086|SM00091|SM00267|SM01079|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254 Alide2_2442 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003844 Uncharacterised protein family UPF0060 GO:0016020 MF_00010|PF02694|SSF103481 Alide2_2443 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013424 PEP-CTERM protein-sorting domain PF07589|TIGR02595 Alide2_2444 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003395|IPR010935|IPR011890|IPR024704|IPR027417|IPR036277 P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal|SMCs flexible hinge|SMCs flexible hinge superfamily|Structural maintenance of chromosomes protein|Structural maintenance of chromosomes protein, prokaryotic GO:0005515|GO:0005524|GO:0005694|GO:0007062|GO:0030261|GO:0051276 G3DSA:3.40.50.300|MF_01894|PF02463|PF06470|PIRSF005719|SM00968|SSF52540|SSF75553|TIGR02168 Alide2_2445 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007449|IPR036765 ZipA, C-terminal FtsZ-binding domain|ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 SM00771|SSF64383 Alide2_2446 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001357|IPR001679|IPR003583|IPR004149|IPR004150|IPR010994|IPR012340|IPR013839|IPR013840|IPR018239|IPR033136|IPR036420 BRCT domain|BRCT domain superfamily|Helix-hairpin-helix DNA-binding motif, class 1|NAD-dependent DNA ligase|NAD-dependent DNA ligase, N-terminal|NAD-dependent DNA ligase, OB-fold|NAD-dependent DNA ligase, active site|NAD-dependent DNA ligase, adenylation|NAD-dependent DNA ligase, conserved site|Nucleic acid-binding, OB-fold|RuvA domain 2-like|Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003677|GO:0003911|GO:0006260|GO:0006281 G3DSA:1.10.150.20|G3DSA:1.10.287.610|G3DSA:2.20.70.80|G3DSA:2.40.50.140|G3DSA:3.30.470.90|G3DSA:3.40.50.10190|MF_01588|PF00533|PF01653|PF03119|PF03120|PF12826|PF14520|PIRSF001604|PS01055|PS01056|SM00278|SM00292|SM00532|SSF47781|SSF50249|SSF52113|SSF56091|TIGR00575 Alide2_2447 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002641|IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase|Patatin-like phospholipase domain GO:0006629 G3DSA:3.40.1090.10|G3DSA:3.40.1090.20|PF01734|SSF52151 Alide2_2448 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001264|IPR001460|IPR012338|IPR023346|IPR036950 Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain superfamily|Penicillin binding protein transglycosylase domain|Penicillin-binding protein, transpeptidase GO:0008658 G3DSA:1.10.3810.10|G3DSA:3.40.710.10|G3DSA:3.90.1310.20|PF00905|PF00912|SSF53955|SSF56601 Alide2_2449 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|SSF103473 Alide2_2450 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000086|IPR015797|IPR020084|IPR029401 NUDIX hydrolase domain|NUDIX hydrolase, conserved site|NUDIX hydrolase-like domain superfamily|Nudix hydrolase, N-terminal GO:0016787 G3DSA:2.20.70.10|G3DSA:3.90.79.10|PF00293|PF14803|PS00893|SSF55811 Alide2_2451 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 Alide2_2452 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR005955|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Glutathione S-transferases, class Zeta|Thioredoxin-like superfamily GO:0003824|GO:0005515|GO:0005737|GO:0009072 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13417|SSF47616|SSF52833|TIGR01262 Alide2_2453 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003730|IPR011324|IPR038371 Cytotoxic necrotizing factor-like, catalytic|Multi-copper polyphenol oxidoreductase|Multi-copper polyphenol oxidoreductase superfamily G3DSA:3.60.140.10|PF02578|SSF64438|TIGR00726 Alide2_2455 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010941|IPR010963|IPR029058 Alpha/Beta hydrolase fold|Poly(R)-hydroxyalkanoic acid synthase, class I|Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0005737|GO:0016746|GO:0042619 G3DSA:3.40.50.1820|PF07167|SSF53474|TIGR01838 Alide2_2456 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930 Alide2_2457 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR011283|IPR020904|IPR036291 Acetoacetyl-CoA reductase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0005737|GO:0016491|GO:0018454|GO:0042619|GO:0055114 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR01829 Alide2_2458 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032781 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12848|PS00211|SM00382|SSF52540 Alide2_2459 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2460 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|SSF47203|SSF56645 Alide2_2461 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_2462 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2463 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002052|IPR004556|IPR007848|IPR017127|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|Modification methylase HemK|Ribosomal protein L3-specific, glutamine-N5-methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0005622|GO:0006479|GO:0008168|GO:0008276|GO:0009007|GO:0032259|GO:0032775 G3DSA:3.40.50.150|PF05175|PIRSF037167|PS00092|SSF53335|TIGR00536|TIGR03533 Alide2_2464 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR005941|IPR011650|IPR036264 Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain|Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089|GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|MF_01690|PF01546|PF07687|SSF53187|SSF55031|TIGR01246 Alide2_2465 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001482|IPR006321|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Pilus retraction protein PilT|Type II/IV secretion system protein GO:0005524 G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00662|SSF52540|TIGR01420 Alide2_2466 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001451|IPR005664|IPR011004|IPR018357|IPR023180|IPR037133 Hexapeptide repeat|Hexapeptide transferase, conserved site|Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family|Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily|Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1|Trimeric LpxA-like superfamily GO:0008666|GO:0009089|GO:0016740 G3DSA:1.10.166.10|G3DSA:2.160.10.10|MF_00811|PF14602|PF14805|PS00101|SSF51161|TIGR00965 Alide2_2467 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004839|IPR015421|IPR015422|IPR015424|IPR019878 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0003824|GO:0009016|GO:0009058|GO:0009089|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383|TIGR03538 Alide2_2468 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007202|IPR010207|IPR017900 4Fe-4S domain|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 G3DSA:1.10.15.40|G3DSA:3.30.70.20|PF04060|PF14697|PS00198|SSF54862|TIGR01944 Alide2_2469 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009656|IPR010915|IPR029058 Alpha/Beta hydrolase fold|PHB de-polymerase, C-terminal|Polyhydroxyalkanoate depolymerase G3DSA:3.40.50.1820|PF06850|PIRSF020818|SSF53474|TIGR01849 Alide2_2470 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007685 RelA/SpoT GO:0015969 G3DSA:1.10.287.860|G3DSA:3.30.460.10|PF04607|SM00954|SSF81301 Alide2_2471 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001269|IPR004653|IPR013785|IPR018517 Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0003824|GO:0008033|GO:0017150|GO:0050660|GO:0055114 G3DSA:1.20.120.1460|G3DSA:3.20.20.70|MF_02041|PF01207|PIRSF006621|PS01136|SSF51395|TIGR00742 Alide2_2472 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain G3DSA:3.10.129.10|PF01575|SSF54637 Alide2_2473 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 Alide2_2474 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005097|IPR032095|IPR036291 NAD(P)-binding domain superfamily|Saccharopine dehydrogenase, C-terminal|Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF03435|PF16653|SSF51735|SSF55347 Alide2_2475 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020459|IPR020845 AMP-binding|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PR00154|PS00455|SSF56801 Alide2_2476 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 Alide2_2477 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000891|IPR013785 Aldolase-type TIM barrel|Pyruvate carboxyltransferase GO:0003824 G3DSA:3.20.20.70|PF00682|SSF51569 Alide2_2478 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2479 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_2480 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010359|IPR010982|IPR018653|IPR026281 Cro/C1-type helix-turn-helix domain|Domain of unknown function DUF2083,transcriptional regulator|HTH-type transcriptional regulator RamB|IrrE N-terminal-like domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0006355|GO:0043565 G3DSA:1.10.260.40|PF01381|PF06114|PF09856|PIRSF019251|SM00530|SSF47413 Alide2_2481 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006098|IPR006099|IPR006158|IPR006159|IPR016176|IPR036724 Cobalamin (vitamin B12)-binding domain|Cobalamin (vitamin B12)-dependent enzyme, catalytic|Cobalamin-binding domain superfamily|Methylmalonyl-CoA mutase, C-terminal|Methylmalonyl-CoA mutase, alpha chain, catalytic|Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0003824|GO:0004494|GO:0016853|GO:0016866|GO:0031419|GO:0046872 G3DSA:3.20.20.240|G3DSA:3.40.50.280|PF01642|PF02310|PS00544|SSF51703|SSF52242|TIGR00640|TIGR00641 Alide2_2482 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005129|IPR027417 P-loop containing nucleoside triphosphate hydrolase|SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 G3DSA:1.10.287.130|G3DSA:1.20.5.170|G3DSA:3.40.50.300|PF03308|SSF52540|TIGR00750 Alide2_2483 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029045|IPR034733 Acetyl-CoA carboxylase|ClpP/crotonase-like domain superfamily G3DSA:3.90.226.10|PF01039|SSF52096 Alide2_2484 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR001882|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR016185 Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin-binding site|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif|Single hybrid motif GO:0005524 G3DSA:2.40.50.100|G3DSA:3.30.470.130|G3DSA:3.30.700.30|PF00289|PF00364|PF02785|PF02786|PS00188|PS00866|PS00867|SM00878|SSF51230|SSF51246|SSF52440|SSF56059 Alide2_2485 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase G3DSA:3.10.180.10|PF13669|SSF54593 Alide2_2486 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002684|IPR006638|IPR007197|IPR010722|IPR013785|IPR024177 Aldolase-type TIM barrel|Biotin and thiamin synthesis-associated domain|Biotin synthase|Biotin synthase/Biotin biosynthesis bifunctional protein BioAB|Elp3/MiaB/NifB|Radical SAM GO:0003824|GO:0004076|GO:0009102|GO:0051536 G3DSA:3.20.20.70|MF_01694|PF04055|PF06968|PIRSF001619|SM00729|SM00876|SSF102114|TIGR00433 Alide2_2487 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2488 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 Alide2_2489 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR013727|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00387|SM00388|SSF47384|SSF55874 Alide2_2490 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2491 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003718|IPR015946|IPR036102 K homology domain-like, alpha/beta|OsmC/Ohr family|OsmC/Ohr superfamily G3DSA:3.30.300.20|PF02566|SSF82784 Alide2_2492 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 Alide2_2493 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021309 Protein of unknown function DUF2892 PF11127 Alide2_2494 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.100|PF07992|SSF51905 Alide2_2495 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.100|PF07992|SSF51905 Alide2_2496 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954 Alide2_2497 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 Alide2_2498 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_2499 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001845|IPR036388|IPR036390 HTH ArsR-type DNA-binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01022|PR00778|SM00418|SSF46785 Alide2_2501 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR015813 HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|SSF51621 Alide2_2502 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005493|IPR036704 Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.40|PF03737|SSF89562 Alide2_2503 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2504 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2505 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain superfamily|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|SM00354|SSF47413|SSF53822 Alide2_2506 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_2507 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001692|IPR012131|IPR016161|IPR022695 Aldehyde/histidinol dehydrogenase|Histidinol dehydrogenase|Histidinol dehydrogenase, conserved site|Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0016491|GO:0051287|GO:0055114 G3DSA:3.40.50.1980|MF_01024|PF00815|PIRSF000099|PR00083|PS00611|SSF53720|TIGR00069 Alide2_2508 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013217|IPR029063 Methyltransferase type 12|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF08242|SSF53335 Alide2_2509 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005636 DTW PF03942|SM01144 Alide2_2510 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR004675|IPR010195|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like|Uncharacterised peroxidase-related GO:0051920|GO:0055114 G3DSA:1.20.1290.10|G3DSA:1.20.5.810|PF02627|SSF69118|TIGR00778|TIGR01926 Alide2_2511 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000917|IPR012549|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Phosphoethanolamine transferase, N-terminal|Sulfatase, N-terminal GO:0003824|GO:0008484|GO:0016021 G3DSA:3.40.720.10|PF00884|PF08019|SSF53649 Alide2_2512 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000326|IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase|Phosphatidic acid phosphatase type 2/haloperoxidase superfamily PF01569|SSF48317 Alide2_2513 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 Alide2_2514 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|SM00387|SM00388|SSF47384|SSF55874 Alide2_2515 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_2516 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2517 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735 Alide2_2518 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_2519 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|SSF47203|SSF56645 Alide2_2521 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_2522 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 Alide2_2523 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036188 FAD/NAD(P)-binding domain superfamily G3DSA:3.30.70.20|G3DSA:3.30.9.90|G3DSA:3.50.50.60|PF05187|PF13450|PR00420|SSF51905|SSF54373|SSF54862 Alide2_2524 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007487|IPR028082 ABC transporter, substrate-binding protein|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF04392|SSF53822 Alide2_2525 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_2526 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_2527 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002078|IPR002197|IPR003018|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417|IPR029016 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|GAF domain|GAF-like domain superfamily|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site GO:0003677|GO:0005515|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF01590|PF02954|PR01590|PS00675|PS00676|PS00688|SM00382|SSF46689|SSF52540|SSF55781 Alide2_2528 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|PR00111|SSF53474 Alide2_2529 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000172|IPR007867|IPR036188 FAD/NAD(P)-binding domain superfamily|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 G3DSA:3.50.50.60|PF00732|PF05199|SSF51905|SSF54373 Alide2_2531 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.30.930.10|SSF55681 Alide2_2532 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001078|IPR023213 2-oxoacid dehydrogenase acyltransferase, catalytic domain|Chloramphenicol acetyltransferase-like domain superfamily GO:0016746 G3DSA:3.30.559.10|PF00198|SSF52777 Alide2_2533 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR003016|IPR011053 2-oxo acid dehydrogenase, lipoyl-binding site|Biotin/lipoyl attachment|Single hybrid motif G3DSA:2.40.50.100|PF00364|PS00189|SSF51230 Alide2_2534 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005475|IPR009014|IPR029061|IPR033248 Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, C-terminal domain|Transketolase-like, pyrimidine-binding domain GO:0003824 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF02779|PF02780|SM00861|SSF52518|SSF52922 Alide2_2535 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001017|IPR029061 Dehydrogenase, E1 component|Thiamin diphosphate-binding fold GO:0016624 G3DSA:3.40.50.970|PF00676|SSF52518 Alide2_2536 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000485|IPR011008|IPR019885|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13404|PR00033|PS00519|SM00344|SSF46785|SSF54909 Alide2_2537 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|SSF53850|TIGR00787 Alide2_2538 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 Alide2_2539 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 Alide2_2540 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 Alide2_2541 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006222|IPR006223|IPR013977|IPR027266|IPR028896|IPR029043 Aminomethyltransferase, folate-binding domain|Aminomethyltransferase-like|GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1|Glycine cleavage T-protein, C-terminal barrel domain|Glycine cleavage T-protein/YgfZ, C-terminal|Glycine cleavage system T protein GO:0004047|GO:0005515|GO:0006546 G3DSA:2.40.30.110|G3DSA:3.30.1360.120|G3DSA:3.30.70.1400|G3DSA:4.10.1250.10|PF01571|PF08669|PIRSF006487|SSF101790|SSF103025|TIGR00528 Alide2_2542 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002930|IPR003016|IPR011053|IPR017453|IPR033753 2-oxo acid dehydrogenase, lipoyl-binding site|Glycine cleavage system H-protein|Glycine cleavage system H-protein, subgroup|Glycine cleavage system H-protein/Simiate|Single hybrid motif GO:0005960|GO:0019464 G3DSA:2.40.50.100|MF_00272|PF01597|PS00189|SSF51230|TIGR00527 Alide2_2543 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003437|IPR015421|IPR015422|IPR015424|IPR020581 Glycine cleavage system P protein|Glycine dehydrogenase (decarboxylating)|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0004375|GO:0006544|GO:0006546|GO:0055114 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00711|PF02347|SSF53383|TIGR00461 Alide2_2544 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003735|IPR038390 Metal-sensitive transcriptional repressor|Metal-sensitive transcriptional repressor superfamily GO:0003677|GO:0006355|GO:0046872 G3DSA:1.20.58.1000|PF02583 Alide2_2545 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002328|IPR011032|IPR013149|IPR013154|IPR014183|IPR020843|IPR036291 Alcohol dehydrogenase class III|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0006069|GO:0008270|GO:0016491|GO:0051903|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|SM00829|SSF50129|SSF51735|TIGR02818 Alide2_2546 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000801|IPR014186|IPR029058 Alpha/Beta hydrolase fold|Putative esterase|S-formylglutathione hydrolase GO:0018738|GO:0046294 G3DSA:3.40.50.1820|PF00756|SSF53474|TIGR02821 Alide2_2548 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_2549 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007197 Radical SAM GO:0003824|GO:0051536 G3DSA:3.80.30.30|PF04055|SSF102114 Alide2_2550 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001437|IPR023459|IPR029462|IPR036953 Regulator of nucleoside diphosphate kinase, N-terminal domain|Transcription elongation factor GreA/GreB family|Transcription elongation factor GreA/GreB, C-terminal domain superfamily|Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784|GO:0070063 G3DSA:1.10.286.20|G3DSA:3.10.50.30|PF01272|PF14760|PIRSF006092|SSF54534 Alide2_2551 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002656 Acyltransferase 3 GO:0016747 PF01757 Alide2_2552 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 Alide2_2553 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878|IPR036250|IPR037069 Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|SSF47203|SSF56645 Alide2_2554 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035 DHS-like NAD/FAD-binding domain superfamily|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|SM00893|SSF52402|SSF52467 Alide2_2555 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000049|IPR012255|IPR014729|IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055 G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|SM00893|SSF52402 Alide2_2556 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_2557 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000286|IPR023696|IPR023801|IPR037138 Histone deacetylase domain|Histone deacetylase domain superfamily|Histone deacetylase family|Ureohydrolase domain superfamily G3DSA:3.40.800.20|PF00850|PR01270|SSF52768 Alide2_2558 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR011703|IPR027417 AAA+ ATPase domain|ATPase, AAA-3|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:1.10.8.300|G3DSA:3.40.50.300|PF07726|PIRSF002849|SM00382|SSF52540 Alide2_2560 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002931|IPR021878|IPR038765 Papain-like cysteine peptidase superfamily|Protein of unknown function DUF3488|Transglutaminase-like G3DSA:3.10.620.30|PF01841|PF11992|SM00460|SSF54001 Alide2_2561 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011757|IPR023346|IPR031304 Lysozyme-like domain superfamily|Lytic transglycosylase MltB|Transglycosylase SLT domain 2 G3DSA:1.10.530.10|G3DSA:1.10.8.350|PF13406|SSF53955|TIGR02282 Alide2_2562 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005475|IPR009014|IPR029061|IPR033248 Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, C-terminal domain|Transketolase-like, pyrimidine-binding domain GO:0003824 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF02779|PF02780|SM00861|SSF52518|SSF52922 Alide2_2563 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005474|IPR029061 Thiamin diphosphate-binding fold|Transketolase, N-terminal G3DSA:3.40.50.970|PF00456|SSF52518 Alide2_2564 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 Alide2_2565 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 Alide2_2566 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|TIGR00787 Alide2_2567 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_2568 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2569 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005474|IPR005475|IPR005478|IPR009014|IPR029061|IPR033248 Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase, bacterial-like|Transketolase-like, pyrimidine-binding domain GO:0003824|GO:0004802 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PF02779|PF02780|SM00861|SSF52518|SSF52922|TIGR00232 Alide2_2570 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006139|IPR006140|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|SSF51735|SSF52283 Alide2_2571 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2572 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004630|IPR018383 Uncharacterised protein family UPF0324, bacteria|Uncharacterised protein family UPF0324, prokaryote GO:0016021 PF03601|TIGR00698 Alide2_2573 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_2574 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018718 Protein of unknown function DUF2242 PF10001 Alide2_2575 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003838|IPR025857 ABC transporter permease protein domain|MacB-like periplasmic core domain GO:0016020 PF02687|PF12704 Alide2_2576 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_2577 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_2578 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_2579 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000905|IPR017860|IPR017861|IPR022450 Gcp-like domain|Kae1/TsaD family|Peptidase M22, conserved site|tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 G3DSA:3.30.420.40|MF_01445|PF00814|PR00789|PS01016|SSF53067|TIGR00329|TIGR03723 Alide2_2580 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644 CBS domain G3DSA:3.10.580.10|PF00571|SM00116|SSF54631 Alide2_2581 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009282|IPR018247 EF-Hand 1, calcium-binding site|Protein of unknown function DUF937 PF06078|PS00018 Alide2_2582 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR039562 Membrane fusion protein, biotin-lipoyl like domain|RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF13533|SSF111369|TIGR01730 Alide2_2583 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR004764|IPR027463 Acriflavin resistance protein|Hydrophobe/amphiphile efflux-1 HAE1|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006855|GO:0015562|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00915 Alide2_2584 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_2585 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005117|IPR006066|IPR006067|IPR007419|IPR012744|IPR016156|IPR017121|IPR023753|IPR036136|IPR036188 BFD-like [2Fe-2S]-binding domain|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Nitrite reductase [NAD(P)H] large subunit, NirB|Nitrite reductase [NAD(P)H], large subunit|Nitrite/Sulfite reductase ferredoxin-like domain|Nitrite/Sulfite reductase ferredoxin-like domain superfamily|Nitrite/sulphite reductase 4Fe-4S domain|Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0008942|GO:0016491|GO:0020037|GO:0042128|GO:0050660|GO:0050661|GO:0051536|GO:0055114 G3DSA:1.10.10.1100|G3DSA:3.30.390.30|G3DSA:3.30.413.10|G3DSA:3.50.50.60|G3DSA:3.90.480.10|PF01077|PF03460|PF04324|PF07992|PIRSF037149|PR00368|PR00397|PR00411|PS00365|SSF51905|SSF55124|SSF56014|TIGR02374 Alide2_2586 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012748|IPR017941|IPR036922 Nitrite reductase [NAD(P)H] small subunit, NirD|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0008942|GO:0016491|GO:0042128|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF00355|SSF50022|TIGR02378 Alide2_2587 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006656|IPR006657|IPR006963|IPR007419|IPR009010 Aspartate decarboxylase-like domain superfamily|BFD-like [2Fe-2S]-binding domain|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0043546|GO:0055114 G3DSA:1.10.10.1100|G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04324|PF04879|PIRSF036643|SM00926|SSF50692|SSF53706 Alide2_2588 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_2589 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032816 SNARE associated Golgi protein PF09335 Alide2_2590 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017459|IPR035902|IPR036320 Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase family 3, N-terminal domain superfamily|Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily G3DSA:1.20.970.10|G3DSA:3.40.1030.10|PF02885|SSF47648|SSF52418 Alide2_2591 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000878|IPR003043|IPR006366|IPR014776|IPR014777|IPR035996 Tetrapyrrole methylase|Tetrapyrrole methylase superfamily|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|Uroporphiryn-III C-methyltransferase, conserved site|Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354|GO:0055114 G3DSA:3.30.950.10|G3DSA:3.40.1010.10|PF00590|PS00839|PS00840|SSF53790|TIGR01469 Alide2_2592 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006683|IPR029069 HotDog domain superfamily|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 Alide2_2593 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004792|IPR023166|IPR036188 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like|FAD/NAD(P)-binding domain superfamily|HI0933-like insert domain superfamily G3DSA:1.10.8.260|G3DSA:2.40.30.10|G3DSA:3.50.50.60|PF03486|PR00411|SSF160996|SSF51905|TIGR00275 Alide2_2594 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010266 NnrS PF05940 Alide2_2595 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018720 Domain of unknown function DUF2249 PF10006 Alide2_2596 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002744|IPR017776|IPR034904 Fe-S cluster assembly domain superfamily|FeS assembly SUF system protein SufT, putative|MIP18 family-like G3DSA:3.30.300.130|PF01883|SSF117916|TIGR03406 Alide2_2597 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 G3DSA:3.90.1010.10|PF01592|SSF82649|TIGR01994 Alide2_2598 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000192|IPR010970|IPR015421|IPR015422|IPR015424|IPR020578 Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Cysteine desulfurase, SufS|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006534|GO:0030170|GO:0031071 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|PS00595|SSF53383|TIGR01979 Alide2_2599 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000825|IPR037284 SUF system FeS cluster assembly, SufBD|SUF system FeS cluster assembly, SufBD superfamily GO:0016226 PF01458|SSF101960 Alide2_2600 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR010230|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|FeS cluster assembly SUF system, ATPase SufC|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR01978 Alide2_2601 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000825|IPR010231|IPR037284 SUF system FeS cluster assembly, SufB|SUF system FeS cluster assembly, SufBD|SUF system FeS cluster assembly, SufBD superfamily GO:0016226 PF01458|SSF101960|TIGR01980 Alide2_2602 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001911|IPR018278|IPR038380 Ribosomal protein S21|Ribosomal protein S21 superfamily|Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.5.1150|MF_00358|PD005521|PF01165|PR00976|PS01181|TIGR00030 Alide2_2603 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003789|IPR019004|IPR023168 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal|Uncharacterised protein YqeY/AIM41 GO:0016884 G3DSA:1.10.10.410|G3DSA:1.10.1510.10|PF09424|SSF89095 Alide2_2604 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.3210.10|PF13487|SSF109604 Alide2_2605 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004165|IPR012791|IPR037171 3-oxoacid CoA-transferase, subunit B|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|SM00882|SSF100950|TIGR02428 Alide2_2606 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004163|IPR004165|IPR012792|IPR037171 3-oxoacid CoA-transferase, subunit A|Coenzyme A transferase binding site|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|PS01273|SM00882|SSF100950|TIGR02429 Alide2_2607 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000792|IPR016032|IPR035965|IPR036388 PAS domain|PAS domain superfamily|Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.20|PF00196|PF13426|PR00038|PS00622|SM00091|SM00421|SSF46894|SSF55785|TIGR00229 Alide2_2608 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002656 Acyltransferase 3 GO:0016747 PF01757 Alide2_2609 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR001048|IPR010167|IPR016181|IPR036393 Acetylglutamate kinase-like superfamily|Acyl-CoA N-acyltransferase|Amino-acid N-acetyltransferase|Aspartate/glutamate/uridylate kinase|GNAT domain GO:0004042|GO:0005737|GO:0006526 G3DSA:3.40.1160.10|G3DSA:3.40.630.30|MF_01105|PF00583|PF00696|PIRSF000423|SSF53633|SSF55729|TIGR01890 Alide2_2610 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006175|IPR019897|IPR035959 RidA, conserved site|RutC-like superfamily|YjgF/YER057c/UK114 family G3DSA:3.30.1330.40|PF01042|PS01094|SSF55298 Alide2_2611 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|SSF54373 Alide2_2612 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015942|IPR026286 Asp/Glu/hydantoin racemase|Maleate isomerase/Arylmalonate decarboxylase GO:0006807|GO:0036361 G3DSA:3.40.50.12500|PF01177|PIRSF015736 Alide2_2613 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 Alide2_2614 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_2615 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_2616 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_2617 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 Alide2_2618 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_2619 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002220|IPR005263|IPR013785|IPR020625 4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, active site GO:0003824|GO:0008840|GO:0009089|GO:0016829 G3DSA:3.20.20.70|MF_00418|PF00701|PIRSF001365|PR00146|PS00666|SM01130|SSF51569|TIGR00674 Alide2_2620 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002869|IPR009014|IPR011766|IPR019752|IPR029061 Pyruvate-flavodoxin oxidoreductase, central domain|Pyruvate/ketoisovalerate oxidoreductase, catalytic domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0016491|GO:0016903|GO:0030976|GO:0055114 G3DSA:3.40.50.970|G3DSA:3.40.920.10|PF01558|PF02775|SSF52518|SSF52922|SSF53323 Alide2_2621 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 Alide2_2622 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003018|IPR003607|IPR006674|IPR029016 GAF domain|GAF-like domain superfamily|HD domain|HD/PDEase domain GO:0005515 G3DSA:1.10.3210.10|G3DSA:3.30.450.40|PF01590|PF01966|PF13487|SM00065|SM00471|SSF109604|SSF55781 Alide2_2623 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003752|IPR022920|IPR023380 Disulphide bond formation protein DsbB|Disulphide bond formation protein DsbB/BdbC|DsbB-like superfamily GO:0015035|GO:0016020 G3DSA:1.20.1550.10|MF_00286|PF02600|SSF158442 Alide2_2624 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR005666|IPR008995|IPR017871|IPR024765|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Sulphate transport system permease protein 1|TOBE-like domain GO:0005524|GO:0008272|GO:0015419|GO:0016020|GO:0016887|GO:0043190 G3DSA:3.40.50.300|PF00005|PF12857|PS00211|SM00382|SSF50331|SSF52540|TIGR00968 Alide2_2625 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR005667|IPR011866|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00969|TIGR02140 Alide2_2626 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR005667|IPR011865|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00969|TIGR02139 Alide2_2627 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 G3DSA:3.40.190.10|PF13531|SSF53850|TIGR00971 Alide2_2628 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010662|IPR029058 Alpha/Beta hydrolase fold|Putative hydrolase RBBP9/YdeN GO:0016787 G3DSA:3.40.50.1820|PF06821|SSF53474 Alide2_2629 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_2630 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003680|IPR023048|IPR029039 Flavodoxin-like fold|Flavoprotein-like superfamily|NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 G3DSA:3.40.50.360|MF_01216|PF02525|SSF52218 Alide2_2631 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005025|IPR029039 Flavoprotein-like superfamily|NADPH-dependent FMN reductase-like GO:0016491 G3DSA:3.40.50.360|PF03358|SSF52218 Alide2_2632 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004872 Lipoprotein NlpA family G3DSA:3.40.190.10|PF03180|PIRSF002854|SSF53850|TIGR00363 Alide2_2633 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_2634 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR018449|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|NIL domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.30.70.260|G3DSA:3.40.50.300|PF00005|PF09383|PS00211|SM00382|SM00930|SSF52540|SSF55021 Alide2_2635 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001129|IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily|Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein G3DSA:1.20.120.550|PF01124|SSF161084 Alide2_2636 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000093|IPR006171|IPR023627|IPR023628 DNA recombination protein RecR|Recombination protein RecR|Recombination protein RecR, C4-type zinc finger|TOPRIM domain GO:0003677|GO:0006281|GO:0006310 G3DSA:1.10.8.420|G3DSA:3.40.1360.10|MF_00017|PF02132|PF13662|SM00493|SSF111304|TIGR00615 Alide2_2637 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004401|IPR036894 Nucleoid-associated protein YbaB-like domain superfamily|Nucleoid-associated protein YbaB/EbfC family G3DSA:3.30.1310.10|MF_00274|PF02575|PIRSF004555|SSF82607|TIGR00103 Alide2_2638 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR008921|IPR012763|IPR021029|IPR022754|IPR027417|IPR038249 AAA+ ATPase domain|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|DNA polymerase III, gamma subunit, domain III|DNA polymerase III, subunit gamma/ tau|DNA polymerase III, tau subunit, C-terminal domain superfamily|DNA polymerase III, tau subunit, domain V|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003887|GO:0005524|GO:0006260|GO:0009360 G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.30.300.150|G3DSA:3.40.50.300|PF12169|PF12170|PF13177|SM00382|SSF48019|SSF52540|TIGR02397 Alide2_2639 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR003725|IPR004606|IPR005116|IPR008995|IPR016462|IPR036388|IPR036390 Molybdate-dependent transcriptional regulator ModE|Molybdate/tungstate binding, C-terminal|Molybdenum-binding protein ModE, N-terminal|Molybdenum-pterin binding|Transcription regulator HTH, LysR|Transport-associated OB, type 1|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355|GO:0015689|GO:0030151 G3DSA:1.10.10.10|G3DSA:2.40.50.100|PF00126|PF03459|PIRSF005763|SSF46785|SSF50331|TIGR00637|TIGR00638 Alide2_2640 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002638|IPR006242|IPR013785|IPR022412|IPR027277|IPR036068|IPR037128 Aldolase-type TIM barrel|Nicotinate phosphoribosyltransferase-like, C-terminal|Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD|Putative pyrophosphorylase ModD|Quinolinate phosphoribosyl transferase, C-terminal|Quinolinate phosphoribosyl transferase, N-terminal|Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0003824|GO:0004514|GO:0009435|GO:0016763 G3DSA:3.20.20.70|G3DSA:3.90.1170.20|PF01729|PF02749|PIRSF006250|SSF51690|SSF54675|TIGR01334 Alide2_2641 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR011867|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR02141 Alide2_2642 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 G3DSA:3.40.190.10|PF13531|SSF53850|TIGR01256 Alide2_2643 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007161|IPR025251 Domain of unknown function DUF4213|Putative heavy-metal chelation domain G3DSA:3.40.50.11590|PF04016|PF13938|SSF159713 Alide2_2644 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13649|SSF53335 Alide2_2645 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_2646 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000522|IPR037294 ABC transporter, BtuC-like|ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 G3DSA:1.10.3470.10|PF01032|SSF81345 Alide2_2647 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002491 ABC transporter periplasmic binding domain G3DSA:1.20.58.2180|G3DSA:3.40.50.1980|PF01497|SSF53807 Alide2_2648 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018912 Protein of unknown function DUF2478 PF10649 Alide2_2649 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 Alide2_2651 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022460|IPR023166|IPR036188 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765|FAD/NAD(P)-binding domain superfamily|HI0933-like insert domain superfamily G3DSA:1.10.8.260|G3DSA:2.40.30.10|G3DSA:3.50.50.60|PF03486|PR00411|SSF160996|SSF51905|TIGR03862 Alide2_2652 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003829|IPR008778|IPR011051|IPR012093|IPR014710 Pirin|Pirin, C-terminal domain|Pirin, N-terminal domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF02678|PF05726|PIRSF006232|SSF51182 Alide2_2653 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003829|IPR008778|IPR011051|IPR012093|IPR014710 Pirin|Pirin, C-terminal domain|Pirin, N-terminal domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF02678|PF05726|PIRSF006232|SSF51182 Alide2_2654 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014017|IPR027417|IPR034739|IPR038726 P-loop containing nucleoside triphosphate hydrolase|PD-(D/E)XK endonuclease-like domain, AddAB-type|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0005524|GO:0016787 G3DSA:3.40.50.300|PF00580|PF12705|PF13361|SSF52540 Alide2_2655 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417|IPR038726 P-loop containing nucleoside triphosphate hydrolase|PD-(D/E)XK endonuclease-like domain, AddAB-type PF12705|SSF52540 Alide2_2656 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005746|IPR013766|IPR017937|IPR036249 Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0006662|GO:0015035|GO:0045454 G3DSA:3.40.30.10|PF00085|PIRSF000077|PR00421|PS00194|SSF52833|TIGR01068 Alide2_2657 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000194|IPR003593|IPR004665|IPR011112|IPR011113|IPR011129|IPR012340|IPR027417|IPR036269 AAA+ ATPase domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|Cold shock domain|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|Rho termination factor, N-terminal|Rho termination factor, N-terminal domain superfamily|Rho termination factor, RNA-binding domain|Transcription termination factor Rho GO:0003676|GO:0003723|GO:0005524|GO:0006353|GO:0008186 G3DSA:1.10.720.10|G3DSA:2.40.50.140|G3DSA:3.40.50.300|MF_01884|PF00006|PF07497|PF07498|SM00357|SM00382|SM00959|SSF50249|SSF52540|SSF68912|TIGR00767 Alide2_2658 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002150|IPR034704 L28p-like|Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.170.50|PF01197|PR01249|PS01143|SSF143800|TIGR00105 Alide2_2660 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 PF01554|TIGR00797 Alide2_2661 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR003594|IPR003661|IPR004358|IPR014310|IPR021766|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain|PAS domain superfamily|Phosphate regulon sensor protein PhoR|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, phosphate regulon sensor PhoR|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0004721|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF11808|PF13188|PR00344|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR02966 Alide2_2662 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR011879|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000156|GO:0000160|GO:0003677|GO:0006355|GO:0006817 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172|TIGR02154 Alide2_2663 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026022|IPR028366|IPR038078 PhoU domain|PhoU-like domain superfamily|Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 G3DSA:1.20.58.220|PF01895|PIRSF003107|SSF109755|TIGR02135 Alide2_2664 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR005670|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Phosphate transport system permease protein 1 GO:0005315|GO:0005524|GO:0016020|GO:0016887|GO:0035435 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540|TIGR00972 Alide2_2665 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR005672|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0016020|GO:0035435|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR00974 Alide2_2666 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR011864|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR02138 Alide2_2667 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005673|IPR024370 PBP domain|Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 G3DSA:3.40.190.10|PF12849|PIRSF002756|SSF53850|TIGR00975 Alide2_2668 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003695|IPR030673 Ppx/GppA phosphatase|Pyrophosphatase, GppA/Ppx-type G3DSA:1.10.3210.10|G3DSA:3.30.420.150|G3DSA:3.30.420.40|PF02541|PIRSF001267|SSF109604|SSF53067 Alide2_2669 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013078|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1 G3DSA:3.40.50.1240|PF00300|PIRSF000709|SM00855|SSF53254 Alide2_2670 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003414|IPR024953|IPR025198|IPR025200|IPR036830|IPR036832 Polyphosphate kinase|Polyphosphate kinase C-terminal domain|Polyphosphate kinase N-terminal domain|Polyphosphate kinase N-terminal domain superfamily|Polyphosphate kinase middle domain|Polyphosphate kinase middle domain superfamily GO:0006799|GO:0008976|GO:0009358 G3DSA:3.30.1840.10|G3DSA:3.30.870.10|MF_00347|PF02503|PF13089|PF13090|PIRSF015589|SSF140356|SSF143724|SSF56024|TIGR03705 Alide2_2671 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016181 Acyl-CoA N-acyltransferase G3DSA:3.40.630.30|PF13444|SSF55729 Alide2_2672 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR001633|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase|PAS domain|PAS domain superfamily G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF13426|SM00052|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254 Alide2_2673 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005841|IPR005843|IPR005844|IPR005845|IPR005846|IPR006352|IPR016055|IPR016066|IPR036900 Alpha-D-phosphohexomutase superfamily|Alpha-D-phosphohexomutase, C-terminal|Alpha-D-phosphohexomutase, C-terminal domain superfamily|Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I|Alpha-D-phosphohexomutase, alpha/beta/alpha domain II|Alpha-D-phosphohexomutase, alpha/beta/alpha domain III|Alpha-D-phosphohexomutase, conserved site|Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966|GO:0016868|GO:0071704 G3DSA:3.30.310.50|G3DSA:3.40.120.10|MF_01554_B|PF00408|PF02878|PF02879|PF02880|PR00509|PS00710|SSF53738|SSF55957|TIGR01455 Alide2_2674 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000489|IPR006390|IPR011005 Dihydropteroate synthase|Dihydropteroate synthase-like|Pterin-binding domain GO:0004156|GO:0009396|GO:0042558|GO:0044237 G3DSA:3.20.20.20|PF00809|PS00792|PS00793|SSF51717|TIGR01496 Alide2_2675 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000642|IPR003593|IPR003959|IPR003960|IPR005936|IPR011546|IPR027417|IPR037219 AAA+ ATPase domain|ATPase, AAA-type, conserved site|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase|Peptidase M41|Peptidase M41, FtsH extracellular|Peptidase M41-like|Peptidase, FtsH GO:0004222|GO:0005524|GO:0006508|GO:0008270|GO:0016020|GO:0016021 G3DSA:1.10.8.60|G3DSA:1.20.58.760|G3DSA:2.40.50.920|G3DSA:3.40.50.300|MF_01458|PF00004|PF01434|PF06480|PS00674|SM00382|SSF140990|SSF52540|TIGR01241 Alide2_2676 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002877|IPR015507|IPR029063 Ribosomal RNA large subunit methyltransferase E|Ribosomal RNA methyltransferase FtsJ domain|S-adenosyl-L-methionine-dependent methyltransferase GO:0001510|GO:0008168|GO:0032259 G3DSA:3.40.50.150|MF_01547|PF01728|PIRSF005461|SSF53335 Alide2_2677 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001890|IPR035920 RNA-binding, CRM domain|YhbY-like superfamily GO:0003723 G3DSA:3.30.110.60|PD010559|PF01985|SM01103|SSF75471 Alide2_2678 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029044 Nucleotide-diphospho-sugar transferases SSF53448 Alide2_2679 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025423 Domain of unknown function DUF4149 PF13664 Alide2_2680 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001437|IPR006359|IPR018151|IPR022691|IPR023459|IPR028624|IPR036805|IPR036953 Transcription elongation factor GreA|Transcription elongation factor GreA/GreB|Transcription elongation factor GreA/GreB family|Transcription elongation factor GreA/GreB, C-terminal domain superfamily|Transcription elongation factor, GreA/GreB, C-terminal|Transcription elongation factor, GreA/GreB, N-terminal|Transcription elongation factor, GreA/GreB, N-terminal domain superfamily|Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784|GO:0070063 G3DSA:1.10.287.180|G3DSA:3.10.50.30|MF_00105|PF01272|PF03449|PIRSF006092|PS00829|SSF46557|SSF54534|TIGR01462 Alide2_2681 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005479|IPR005480|IPR005483|IPR006275|IPR011607|IPR016185|IPR036897|IPR036914 Carbamoyl-phosphate synthase large subunit, CPSase domain|Carbamoyl-phosphate synthase, large subunit|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Carbamoyl-phosphate synthetase, large subunit oligomerisation domain|Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily|Methylglyoxal synthase-like domain|Methylglyoxal synthase-like domain superfamily|Pre-ATP-grasp domain superfamily GO:0005524|GO:0006807 G3DSA:1.10.1030.10|G3DSA:3.30.470.20|G3DSA:3.40.50.1380|G3DSA:3.40.50.20|MF_01210_A|MF_01210_B|PF02142|PF02786|PF02787|PR00098|PS00866|PS00867|SM00851|SM01096|SSF48108|SSF52335|SSF52440|SSF56059|TIGR01369 Alide2_2682 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002474|IPR006274|IPR017926|IPR029062|IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain|Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily|Carbamoyl-phosphate synthase, small subunit|Class I glutamine amidotransferase-like|Glutamine amidotransferase GO:0004088|GO:0006207|GO:0006541 G3DSA:3.40.50.880|G3DSA:3.50.30.20|MF_01209|PF00117|PF00988|PR00096|PR00097|PR00099|SM01097|SSF52021|SSF52317|TIGR01368 Alide2_2683 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|SSF56349 Alide2_2684 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF12728 Alide2_2685 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_2688 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 Alide2_2690 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013651 ATP-grasp fold, RimK-type G3DSA:3.30.470.20|PF08443|SSF56059 Alide2_2692 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016181 Acyl-CoA N-acyltransferase G3DSA:3.40.630.30|SSF55729 Alide2_2693 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 PF04471 Alide2_2695 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061|IPR010260 DNA-binding transcriptional activator AlpA|Putative DNA-binding domain superfamily G3DSA:1.10.238.160|PF05930|SSF46955 Alide2_2696 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13245|SSF52540 Alide2_2697 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13175|SSF52540 Alide2_2698 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000119|IPR010992 Histone-like DNA-binding protein|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|SSF47729 Alide2_2700 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527|SSF46689 Alide2_2701 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF13276|PF13683|SSF53098 Alide2_2703 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13649|SSF53335 Alide2_2705 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021647 Copper binding periplasmic protein CusF G3DSA:2.40.50.320|PF11604 Alide2_2706 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000923|IPR003245|IPR008972 Blue (type 1) copper domain|Cupredoxin|Phytocyanin domain GO:0005507|GO:0009055 G3DSA:2.60.40.420|PD003122|PF00127|SSF49503 Alide2_2707 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002355|IPR008972|IPR011706|IPR011707|IPR019546 Cupredoxin|Multicopper oxidase, copper-binding site|Multicopper oxidase, type 2|Multicopper oxidase, type 3|Twin-arginine translocation pathway, signal sequence, bacterial/archaeal GO:0005507|GO:0016491|GO:0055114 G3DSA:2.60.40.420|PF07731|PF07732|PS00080|SSF49503|TIGR01409 Alide2_2708 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954 Alide2_2711 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 MF_00724|PF02049|PR01006 Alide2_2712 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000890|IPR004372|IPR023865 Acetate/propionate kinase|Aliphatic acid kinase, short-chain|Aliphatic acid kinase, short-chain, conserved site GO:0005622|GO:0006082|GO:0016301|GO:0016310|GO:0016774 G3DSA:3.30.420.40|MF_00020|PF00871|PIRSF000722|PR00471|PS01076|SSF53067|TIGR00016 Alide2_2713 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF13411|PR00040|SM00422|SSF46955 Alide2_2714 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003333|IPR029063 Mycolic acid cyclopropane synthase|S-adenosyl-L-methionine-dependent methyltransferase GO:0008610 G3DSA:3.40.50.150|PF02353|PIRSF003085|SSF53335 Alide2_2716 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005593|IPR018970|IPR029061 Thiamin diphosphate-binding fold|Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase|Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal GO:0005975|GO:0016832 G3DSA:3.40.50.970|PF03894|PF09364|SSF52518 Alide2_2718 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000846|IPR006436|IPR020828|IPR020829|IPR020831|IPR036291 Dihydrodipicolinate reductase, N-terminal|Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain|Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain|Glyceraldehyde-3-phosphate dehydrogenase, type II|Glyceraldehyde/Erythrose phosphate dehydrogenase family|NAD(P)-binding domain superfamily GO:0005737|GO:0006096|GO:0008839|GO:0009089|GO:0016620|GO:0050661|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_00559|PF01113|PF02800|PIRSF000149|SM00846|SSF51735|SSF55347|TIGR01546 Alide2_2719 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004147|IPR011009 Protein kinase-like domain superfamily|UbiB domain PF03109|SSF56112 Alide2_2720 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006139|IPR006140|IPR029752|IPR029753|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|PS00065|PS00670|PS00671|SSF51735|SSF52283 Alide2_2721 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13649|SSF53335 Alide2_2723 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032816 SNARE associated Golgi protein PF09335 Alide2_2724 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001478|IPR001940|IPR009003|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.120|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494 Alide2_2725 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR005946|IPR029057|IPR029099 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like|Ribose-phosphate pyrophosphokinase|Ribose-phosphate pyrophosphokinase, N-terminal domain GO:0000287|GO:0004749|GO:0009116|GO:0009165 G3DSA:3.40.50.2020|PF00156|PF13793|SM01400|SSF53271|TIGR01251 Alide2_2726 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000053|IPR000312|IPR013102|IPR013466|IPR017459|IPR017872|IPR028579|IPR035902|IPR036320|IPR036566 Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase family 3, N-terminal domain superfamily|Glycosyl transferase, family 3|Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily|Putative thymidine phosphorylase|Pyrimidine nucleoside phosphorylase, C-terminal|Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily|Pyrimidine-nucleoside phosphorylase, conserved site|Thymidine phosphorylase/AMP phosphorylase|Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206|GO:0006213|GO:0016757|GO:0016763 G3DSA:1.20.970.50|G3DSA:3.40.1030.10|G3DSA:3.90.1170.30|MF_00703|PF00591|PF02885|PF07831|PIRSF000478|PS00647|SM00941|SSF47648|SSF52418|SSF54680|TIGR02645 Alide2_2727 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR011108|IPR022712|IPR036866 Beta-Casp domain|Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like|Zn-dependent metallo-hydrolase, RNA specificity domain G3DSA:3.40.50.10890|G3DSA:3.60.15.10|PF00753|PF07521|PF10996|SM00849|SM01027|SSF56281 Alide2_2728 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007621 TPM domain G3DSA:3.10.310.50|PF04536 Alide2_2729 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007621 TPM domain G3DSA:3.10.310.50|PF04536 Alide2_2730 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007156|IPR023353 LemA|LemA-like domain superfamily G3DSA:1.20.1440.20|PF04011|SSF140478 Alide2_2731 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001958|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PR01035|SSF103473 Alide2_2732 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR006121|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036163|IPR036412 HAD superfamily|HAD-like superfamily|Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872 G3DSA:2.70.150.20|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PS00154|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525 Alide2_2733 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016898|IPR022486|IPR022488|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Polyphosphate kinase 2|Polyphosphate kinase 2, PA0141|Polyphosphate kinase-2-related GO:0006793|GO:0008976 G3DSA:3.40.50.300|PF03976|PIRSF028756|SSF52540|TIGR03707 Alide2_2735 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061|IPR015358 MerR-type HTH domain|Putative DNA-binding domain superfamily|Transcription regulator MerR, DNA binding GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF00376|PF09278|PR00040|SM00422|SSF46955 Alide2_2736 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025421 Protein of unknown function DUF4148 PF13663 Alide2_2738 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic SSF56059 Alide2_2739 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR004763|IPR027463 Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006812|GO:0008324|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00914 Alide2_2740 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR021647|IPR032317 Copper binding periplasmic protein CusF|RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|G3DSA:2.40.50.320|PF11604|PF16576|SSF111369|TIGR01730 Alide2_2741 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954 Alide2_2742 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021250 Protein of unknown function DUF2789 G3DSA:1.10.10.1130|PF10982 Alide2_2743 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003416|IPR025105 Domain of unknown function DUF4010|MgtC/SapB/SrpB/YhiD family GO:0016020 PF02308|PF13194 Alide2_2745 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011045|IPR011964|IPR015943 Nitrous oxide reductase, N-terminal|WD40/YVTN repeat-like-containing domain superfamily|YVTN beta-propeller repeat GO:0005515 G3DSA:2.130.10.10|PF02239|SSF50974|TIGR02276 Alide2_2746 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024501|IPR029058 Alpha/Beta hydrolase fold|Protein of unknown function DUF3141 G3DSA:3.40.50.1820|PF11339|SSF53474 Alide2_2747 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR007029|IPR008250|IPR009078|IPR011017|IPR012348|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036412 Ferritin-like superfamily|HAD superfamily|HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily|Ribonucleotide reductase-like|TRASH domain|YHS domain GO:0000166|GO:0006812|GO:0016021|GO:0016491|GO:0019829|GO:0055114 G3DSA:1.10.620.20|G3DSA:2.70.150.20|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00702|PF04945|PR00119|PR00943|PS00154|SM00746|SSF47240|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525 Alide2_2748 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021682 Protein of unknown function DUF2933 PF11666 Alide2_2749 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006121|IPR017969|IPR036163 Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site GO:0030001|GO:0046872 G3DSA:3.30.70.100|PF00403|PS01047|SSF55008 Alide2_2750 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007318 Phospholipid methyltransferase G3DSA:1.20.120.1630|PF04191 Alide2_2751 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021682 Protein of unknown function DUF2933 PF11666 Alide2_2753 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021647 Copper binding periplasmic protein CusF G3DSA:2.40.50.320|PF11604 Alide2_2754 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR006291|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcriptional regulatory protein PcoR, heavy metal response|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172|TIGR01387 Alide2_2755 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_2756 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_2759 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015032|IPR036490 Hypothetical protein MTH538 superfamily|MTH538 TIR-like domain PF08937|SSF52206 Alide2_2761 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006683|IPR029069 HotDog domain superfamily|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 Alide2_2762 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type PF12705 Alide2_2765 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022389 ParB-related, ThiF-related cassette, protein D G3DSA:3.30.420.40|SSF53067|TIGR03739 Alide2_2766 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010998|IPR011010|IPR024456|IPR024457 DNA breaking-rejoining enzyme, catalytic core|Integrase catalytic domain, putative|Integrase/recombinase, N-terminal|Putative integrase, N-terminal GO:0003677 G3DSA:1.10.150.130|PF12834|PF12835|SSF56349 Alide2_2767 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001801|IPR027444|IPR037150 Histone-like protein H-NS|Histone-like protein H-NS, C-terminal domain|Histone-like protein H-NS, C-terminal domain superfamily GO:0003677|GO:0005622|GO:0006355 G3DSA:4.10.430.10|PF00816|SM00528|SSF81273 Alide2_2770 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018560|IPR022499|IPR028090 Domain of unknown function DUF2016|JAB domain, prokaryotic|ParB-related, ThiF-related cassette, protein A PF09436|PF14464|SSF102712|TIGR03735 Alide2_2771 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022280|IPR032787 ParB-related, ThiF-related cassette, protein B|Prokaryotic E2 family D PF14460|TIGR03737 Alide2_2773 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR038717 Homeobox-like domain superfamily|Tc1-like transposase, DDE domain GO:0003677 PF13358|PF13565|SSF46689 Alide2_2775 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022289|IPR032866 ParB-related, ThiF-related cassette, protein C|Prokaryotic Ubiquitin PF14454|TIGR03738 Alide2_2776 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022273 ParB-related, ThiF-related cassette, protein E TIGR03741 Alide2_2777 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003115|IPR004437|IPR022396|IPR036086 ParB-related, ThiF-related cassette, ParB|ParB/RepB/Spo0J partition protein family|ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily GO:0003677 G3DSA:1.10.10.2830|G3DSA:3.90.1530.30|PF02195|SM00470|SSF109709|SSF110849|TIGR00180|TIGR03734 Alide2_2778 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002052|IPR003356|IPR029063 DNA methylase, N-6 adenine-specific, conserved site|DNA methylase, adenine-specific|S-adenosyl-L-methionine-dependent methyltransferase GO:0003676|GO:0003677|GO:0006306|GO:0008168|GO:0008170|GO:0032259 G3DSA:3.40.50.150|PF02384|PR00507|PS00092|SSF53335 Alide2_2780 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006555|IPR006935|IPR014001|IPR027417 ATP-dependent helicase, C-terminal|Helicase superfamily 1/2, ATP-binding domain|Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0003677|GO:0005524|GO:0006139|GO:0008026|GO:0016787|GO:0016818 G3DSA:3.40.50.300|PF04851|PF13307|SM00487|SM00491|SSF52540 Alide2_2782 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008878 Transposase IS66, Orf2 PF05717 Alide2_2783 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR010921 Transposase IS3/IS911family|Trp repressor/replication initiator GO:0003677|GO:0004803|GO:0006313|GO:0043565 PF01527|SSF48295 Alide2_2788 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006171|IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal|TOPRIM domain GO:0003896|GO:0004386|GO:0008270 PF08273|PF13362|SM00778|SSF57783 Alide2_2789 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026325 Protein of unknown function DUF932 PF06067 Alide2_2790 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015927|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C PF00717|SSF51306 Alide2_2792 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 PD016592|PF05280|SSF160930 Alide2_2793 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011119 Uncharacterised domain, helicase/relaxase, putative G3DSA:1.10.3210.40|PF07514 Alide2_2794 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022458|IPR027417|IPR032689 Conjugative coupling factor TraG/TraD|P-loop containing nucleoside triphosphate hydrolase|TraD/TraG, TraM recognition site G3DSA:3.40.50.300|PF12696|SSF52540|TIGR03743 Alide2_2795 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022266 Integrating conjugative element protein, PFL4697-type PF14348 Alide2_2796 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF13560|SM00530|SSF47413 Alide2_2799 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 Alide2_2800 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006665|IPR036737 OmpA-like domain|OmpA-like domain superfamily G3DSA:3.30.1330.60|PF00691|SSF103088 Alide2_2802 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 PF07178|TIGR02762 Alide2_2803 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007973 Pilus assembly TraE GO:0000746 PF05309|TIGR02761 Alide2_2804 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010563 Pilus assembly TraK PF06586 Alide2_2805 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI PF03743 Alide2_2806 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009094|IPR012336|IPR018950|IPR036249 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily|Disulphide bond isomerase, DsbC/G, N-terminal|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0042597 G3DSA:3.40.30.10|PF10411|PF13098|SSF52833|SSF54423 Alide2_2807 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014118 Type IV conjugative transfer system protein TraV PF09676 Alide2_2808 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014117|IPR025955|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:1.10.8.730|G3DSA:3.40.50.300|PF11130|SSF52540|TIGR02746 Alide2_2810 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014139|IPR019533|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S26|Peptidase S26C, conjugative transfer signal peptidase TraF GO:0000746|GO:0042597 G3DSA:2.10.109.10|PF10502|SSF51306|TIGR02771 Alide2_2812 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014114|IPR025864 Type-F conjugative transfer system protein TraW|Type-F conjugative transfer system protein TraW N-terminal domain PF12477|TIGR02743 Alide2_2813 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009649 TraU PF06834 Alide2_2814 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014113|IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC|Type-F conjugative transfer system pilin assembly protein TrbC, subgroup PF09673|TIGR02742 Alide2_2815 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN PF06986 Alide2_2817 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014111|IPR036249|IPR039555 F plasmid transfer operon protein|Thioredoxin-like superfamily|Type IV conjugative transfer system protein TraF-like G3DSA:3.40.30.10|PF13728|SSF52833|TIGR02740 Alide2_2818 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010927 Type IV conjugative transfer system protein TraH PF06122 Alide2_2819 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012931 TraG-like, N-terminal PF07916 Alide2_2822 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001254|IPR001314|IPR009003|IPR018114|IPR033116 Peptidase S1, PA clan|Peptidase S1A, chymotrypsin family|Serine proteases, trypsin domain|Serine proteases, trypsin family, histidine active site|Serine proteases, trypsin family, serine active site GO:0004252|GO:0006508 G3DSA:2.40.10.10|PF00089|PR00722|PS00134|PS00135|SM00020|SSF50494 Alide2_2823 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF13411|SM00422|SSF46955 Alide2_2824 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000119|IPR005684|IPR010992|IPR020816 Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain superfamily|Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 G3DSA:4.10.520.10|MF_00380|PF00216|PR01727|PS00045|SM00411|SSF47729|TIGR00987 Alide2_2825 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002547|IPR004532|IPR005121|IPR005146|IPR005147|IPR009061|IPR012340|IPR020825|IPR036690 B3/B4 tRNA-binding domain|Ferrodoxin-fold anticodon-binding domain|Ferrodoxin-fold anticodon-binding domain superfamily|Nucleic acid-binding, OB-fold|Phenylalanine-tRNA ligase, class IIc, beta subunit|Phenylalanyl-tRNA synthetase, B3/B4|Putative DNA-binding domain superfamily|tRNA synthetase, B5-domain|tRNA-binding domain GO:0000049|GO:0000287|GO:0003723|GO:0004826|GO:0005524|GO:0005737|GO:0006432 G3DSA:2.40.50.140|G3DSA:3.30.56.10|G3DSA:3.30.70.380|G3DSA:3.30.930.10|G3DSA:3.50.40.10|MF_00283|PF01588|PF03147|PF03483|PF03484|SM00873|SM00874|SM00896|SSF46955|SSF50249|SSF54991|SSF55681|SSF56037|TIGR00472 Alide2_2826 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002319|IPR004188|IPR004529|IPR010978|IPR022911 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm|Phenylalanine-tRNA ligase alpha chain 1, bacterial|Phenylalanine-tRNA ligase, class II, N-terminal|Phenylalanyl-tRNA synthetase|Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000049|GO:0000166|GO:0004812|GO:0004826|GO:0005524|GO:0005737|GO:0006432|GO:0043039 G3DSA:3.30.930.10|MF_00281|PF01409|PF02912|SSF46589|SSF55681|TIGR00468 Alide2_2827 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005813|IPR035566 Ribosomal protein L20|Ribosomal protein L20, C-terminal GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:1.10.1900.20|G3DSA:1.10.720.90|MF_00382|PD002389|PF00453|PR00062|PS00937|SSF74731|TIGR01032 Alide2_2828 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001706|IPR018265|IPR021137|IPR037229 Ribosomal protein L35|Ribosomal protein L35 superfamily|Ribosomal protein L35, conserved site|Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.40.50.530|MF_00514|PF01632|PR00064|PS00936|SSF143034|TIGR00001 Alide2_2829 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001288|IPR019813|IPR019814|IPR019815|IPR036787|IPR036788 Translation initiation factor 3|Translation initiation factor 3 (IF-3), C-terminal domain superfamily|Translation initiation factor 3 (IF-3), N-terminal domain superfamily|Translation initiation factor 3, C-terminal|Translation initiation factor 3, N-terminal|Translation initiation factor 3, conserved site GO:0003743|GO:0006413 G3DSA:3.10.20.80|G3DSA:3.30.110.10|MF_00080|PF00707|PF05198|PS00938|SSF54364|SSF55200|TIGR00168 Alide2_2830 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002314|IPR002320|IPR004095|IPR004154|IPR012675|IPR012676|IPR012947|IPR018163|IPR036621 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Anticodon-binding domain superfamily|Beta-grasp domain superfamily|TGS|TGS-like|Threonine-tRNA ligase, class IIa|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166|GO:0004812|GO:0004829|GO:0005524|GO:0005737|GO:0006418|GO:0006435|GO:0043039 G3DSA:3.10.20.30|G3DSA:3.30.54.20|G3DSA:3.30.930.10|G3DSA:3.30.980.10|G3DSA:3.40.50.800|MF_00184|PF00587|PF02824|PF03129|PF07973|PR01047|SM00863|SSF52954|SSF55186|SSF55681|SSF81271|TIGR00418 Alide2_2831 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR001437|IPR016181|IPR029462|IPR036953 Acyl-CoA N-acyltransferase|GNAT domain|Regulator of nucleoside diphosphate kinase, N-terminal domain|Transcription elongation factor GreA/GreB, C-terminal domain superfamily|Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 G3DSA:3.10.50.30|G3DSA:3.40.630.30|PF01272|PF13302|PF14760|SSF54534|SSF55729 Alide2_2832 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006254|IPR015813|IPR018523 Isocitrate lyase|Isocitrate lyase/phosphorylmutase, conserved site|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824|GO:0004451|GO:0019752 G3DSA:3.20.20.60|PF00463|PIRSF001362|PS00161|SSF51621|TIGR01346 Alide2_2833 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_2834 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003121|IPR019835|IPR036885 SWIB domain|SWIB/MDM2 domain|SWIB/MDM2 domain superfamily GO:0005515 G3DSA:1.10.245.10|PF02201|SM00151|SSF47592 Alide2_2835 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007419 BFD-like [2Fe-2S]-binding domain G3DSA:1.10.10.1100|PF04324 Alide2_2836 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006260|IPR037682 TonB, C-terminal|TonB/TolA, C-terminal GO:0055085 G3DSA:3.30.1150.10|PF03544|PR01217|SSF74653|TIGR01352 Alide2_2837 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002898 MotA/TolQ/ExbB proton channel PF01618 Alide2_2838 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 G3DSA:3.30.420.270|PF02472 Alide2_2839 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019600 Hemin uptake protein HemP G3DSA:2.10.70.10|PF10636 Alide2_2840 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005624|IPR038084 GlcG-like domain superfamily|Haem-degrading G3DSA:3.30.450.150|PF03928|SSF143744 Alide2_2841 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006214 Bax inhibitor 1-related PF01027 Alide2_2842 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01047|PR00598|SM00347|SSF46785 Alide2_2843 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|G3DSA:1.20.1720.10|PF07690|SSF103473 Alide2_2845 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000390 Small multidrug resistance protein family GO:0016021 G3DSA:1.10.3730.20|PF00893|SSF103481 Alide2_2846 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003370 Chromate transporter GO:0015109|GO:0015703 PF02417 Alide2_2847 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003370 Chromate transporter GO:0015109|GO:0015703 PF02417 Alide2_2848 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003000|IPR026591|IPR027546|IPR029035 DHS-like NAD/FAD-binding domain superfamily|Sirtuin family|Sirtuin, catalytic core small domain superfamily|Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 G3DSA:3.30.1600.10|G3DSA:3.40.50.1220|MF_01121|PF02146|SSF52467 Alide2_2849 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR025996|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|WHG domain GO:0003677 G3DSA:1.10.357.10|PF00440|PF13305|SSF46689|SSF48498 Alide2_2850 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009874|IPR011008 Dimeric alpha-beta barrel|Protein of unknown function DUF1428 G3DSA:3.30.70.100|PF07237|PIRSF007028|SSF54909 Alide2_2851 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006913|IPR011057 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V|Mss4-like superfamily GO:0016846 G3DSA:2.170.150.70|PF04828|SSF51316 Alide2_2852 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028973|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|PhnB-like G3DSA:3.10.180.10|PF06983|SSF54593 Alide2_2853 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013538|IPR023393 Activator of Hsp90 ATPase homologue 1-like|START-like domain superfamily G3DSA:3.30.530.20|PF08327|SSF55961 Alide2_2854 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009725|IPR028973|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|PhnB-like|Predicted 3-demethylubiquinone-9 3-methyltransferase G3DSA:3.10.180.70|PF06983|PIRSF021700|SSF54593 Alide2_2855 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase G3DSA:3.10.180.10|SSF54593 Alide2_2856 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013538|IPR023393 Activator of Hsp90 ATPase homologue 1-like|START-like domain superfamily G3DSA:3.30.530.20|PF08327|SSF55961 Alide2_2857 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001537|IPR004441|IPR013123|IPR024915|IPR029026|IPR029028|IPR029064 23S rRNA (guanosine-2-O-)-methyltransferase RlmB|50S ribosomal protein L30e-like|Alpha/beta knot methyltransferases|RNA 2-O ribose methyltransferase, substrate binding|RNA methyltransferase TrmH family|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008168|GO:0008173 G3DSA:3.30.1330.30|G3DSA:3.40.1280.10|MF_01887|PF00588|PF08032|SM00967|SSF55315|SSF75217|TIGR00186 Alide2_2858 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001991|IPR023025|IPR036458 Serine/threonine transporter SstT|Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0015826|GO:0016021|GO:0032329 G3DSA:1.10.3860.10|MF_01582|PF00375|PR00173|SSF118215 Alide2_2859 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_2860 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013830|IPR036514 SGNH hydrolase superfamily|SGNH hydrolase-type esterase domain G3DSA:3.40.50.1110|PF13472|SSF52266 Alide2_2861 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018692 Predicted integral membrane protein DUF2189 PF09955 Alide2_2862 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000277|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|SSF53383 Alide2_2863 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007055|IPR014004 BON domain|Transport-associated and nodulation domain, bacteria PF04972|SM00749 Alide2_2864 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002645|IPR011547|IPR036513 SLC26A/SulP transporter domain|STAS domain|STAS domain superfamily GO:0008272|GO:0015116|GO:0016021 G3DSA:3.30.750.24|PF00916|PF01740|SSF52091 Alide2_2865 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 Alide2_2866 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025501|IPR025669|IPR027417 AAA domain|ATP binding protein MinD|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|PIRSF003092|SSF52540 Alide2_2867 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR012694|IPR025110|IPR032387 AMP-binding enzyme, C-terminal domain|AMP-dependent synthetase/ligase|Acetyl-coenzyme A synthetase, N-terminal domain|Propionate--CoA ligase GO:0003824|GO:0019629|GO:0050218 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PF16177|SSF56801|TIGR02316 Alide2_2868 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000868|IPR036380 Isochorismatase-like|Isochorismatase-like superfamily GO:0003824 G3DSA:3.40.50.850|PF00857|SSF52499 Alide2_2869 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011041|IPR011042|IPR012938 Glucose/Sorbosone dehydrogenase|Six-bladed beta-propeller, TolB-like|Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 G3DSA:2.120.10.30|PF07995|SSF50952 Alide2_2870 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_2871 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010061|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|SSF53720|TIGR01722 Alide2_2872 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009739 Lysozyme inhibitor LprI, N-terminal G3DSA:1.20.1270.180|PF07007 Alide2_2873 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 Alide2_2874 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007076 TfoX, N-terminal PF04993|SSF159894 Alide2_2875 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002204|IPR006115|IPR008927|IPR011548|IPR013328|IPR015815|IPR029154|IPR036291 3-hydroxyisobutyrate dehydrogenase|3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|3-hydroxyisobutyrate dehydrogenase-related, conserved site|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0008442|GO:0016491|GO:0050661|GO:0051287|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PS00895|SSF48179|SSF51735|TIGR01692 Alide2_2876 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006342|IPR029063 Methyltransferase FkbM|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF05050|SSF53335|TIGR01444 Alide2_2879 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001926|IPR006653|IPR006654|IPR023026|IPR036052 Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta chain/beta chain-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme|Tryptophan synthase, beta chain|Tryptophan synthase, beta chain, conserved site GO:0000162|GO:0004834|GO:0006568 G3DSA:3.40.50.1100|MF_00133|PF00291|PIRSF001413|PS00168|SSF53686|TIGR00263 Alide2_2880 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007416 Protein of unknown function DUF469 PF04320 Alide2_2881 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007392|IPR013974|IPR017654 D-galactarate/Altronate dehydratase, C-terminal|Galactarate dehydratase GarD-like|SAF domain GO:0008867|GO:0016829|GO:0046392 G3DSA:3.90.1210.30|PF04295|PF08666|SM00858|TIGR03248 Alide2_2882 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2883 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013341|IPR013342|IPR029017|IPR029065|IPR036849 Enolase C-terminal domain-like|Enolase-like, C-terminal domain superfamily|Enolase-like, N-terminal|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme, N-terminal domain G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF02746|PF13378|SM00922|SSF51604|SSF54826 Alide2_2884 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 Alide2_2885 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2886 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002220|IPR013785|IPR017655 5-dehydro-4-deoxyglucarate dehydratase|Aldolase-type TIM barrel|DapA-like GO:0003824|GO:0016052|GO:0016829|GO:0047448 G3DSA:3.20.20.70|MF_00694|PF00701|PIRSF001365|SM01130|SSF51569|TIGR03249 Alide2_2887 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2888 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006139|IPR006140|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|SSF51735|SSF52283 Alide2_2889 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013342|IPR029017|IPR029065|IPR036849 Enolase C-terminal domain-like|Enolase-like, C-terminal domain superfamily|Enolase-like, N-terminal|Mandelate racemase/muconate lactonizing enzyme, C-terminal G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF13378|SM00922|SSF51604|SSF54826 Alide2_2890 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720 Alide2_2891 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004616|IPR016181 Acyl-CoA N-acyltransferase|Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 G3DSA:2.30.210.20|G3DSA:3.40.630.70|MF_00688|PF03588|SSF55729|TIGR00667 Alide2_2892 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007471|IPR007472|IPR016181|IPR017138 Acyl-CoA N-acyltransferase|Aspartate/glutamate leucyltransferase|N-end aminoacyl transferase, N-terminal|N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0008914|GO:0016598|GO:0071596 MF_00689|PF04376|PF04377|PIRSF037208|SSF55729 Alide2_2893 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003829|IPR011051|IPR012093|IPR014710 Pirin|Pirin, N-terminal domain|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF02678|PIRSF006232|SSF51182 Alide2_2894 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_2895 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002937|IPR036188 Amine oxidase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.60|G3DSA:3.90.660.10|PF01593|PF13450|PR00419|SSF51905 Alide2_2896 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000924|IPR014729|IPR020058|IPR022380 Glutamyl-Q tRNA(Asp) synthetase|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006400|GO:0043039 G3DSA:3.40.50.620|MF_01428|PF00749|PR00987|SSF52374|TIGR03838 Alide2_2897 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003358|IPR029063 S-adenosyl-L-methionine-dependent methyltransferase|tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 G3DSA:3.40.50.150|MF_01057|PF02390|SSF53335|TIGR00091 Alide2_2898 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 Alide2_2899 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002318|IPR003156|IPR009000|IPR012947|IPR018162|IPR018163|IPR018164|IPR023033 Alanine-tRNA ligase, class IIc|Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily|Alanine-tRNA ligase, eukaryota/bacteria|Alanyl-tRNA synthetase, class IIc, N-terminal|DHHA1 domain|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily|Translation protein, beta-barrel domain superfamily GO:0000166|GO:0003676|GO:0004812|GO:0004813|GO:0005524|GO:0005737|GO:0006419|GO:0043039 G3DSA:2.40.30.130|G3DSA:3.10.310.40|G3DSA:3.30.54.20|G3DSA:3.30.930.10|G3DSA:3.30.980.10|MF_00036_B|PF01411|PF02272|PF07973|PR00980|SM00863|SSF101353|SSF50447|SSF55186|SSF55681|TIGR00344 Alide2_2900 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002220|IPR013785 Aldolase-type TIM barrel|DapA-like GO:0003824|GO:0016829 G3DSA:3.20.20.70|PF00701|PIRSF001365|PR00146|SM01130|SSF51569 Alide2_2901 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 Alide2_2902 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 Alide2_2903 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480 Alide2_2904 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003767|IPR036111 Malate/L-lactate dehydrogenase-like|Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 G3DSA:1.10.1530.10|G3DSA:3.30.1370.60|G3DSA:3.30.60.50|PF02615|SSF89733 Alide2_2905 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 Alide2_2906 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006145|IPR006224|IPR020103 Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.30.2350.10|PF00849|PS01129|SSF55120 Alide2_2907 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR013815|IPR016102|IPR016181|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|Acyl-CoA N-acyltransferase|GNAT domain|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|G3DSA:3.40.630.30|PF00583|PF13549|PF13607|SSF51735|SSF52210|SSF55729|SSF56059 Alide2_2908 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007507|IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal|3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily G3DSA:3.40.50.11720|G3DSA:3.40.50.2000|PF04413|SSF53756 Alide2_2909 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005841|IPR005843|IPR005844|IPR005845|IPR005846|IPR016055|IPR016066|IPR036900 Alpha-D-phosphohexomutase superfamily|Alpha-D-phosphohexomutase, C-terminal|Alpha-D-phosphohexomutase, C-terminal domain superfamily|Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I|Alpha-D-phosphohexomutase, alpha/beta/alpha domain II|Alpha-D-phosphohexomutase, alpha/beta/alpha domain III|Alpha-D-phosphohexomutase, conserved site GO:0000287|GO:0005975|GO:0016868|GO:0071704 G3DSA:3.30.310.50|G3DSA:3.40.120.10|PF00408|PF02878|PF02879|PF02880|PR00509|PS00710|SSF53738|SSF55957 Alide2_2910 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2911 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_2912 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011051|IPR014710|IPR021120|IPR024203 5-deoxy-glucuronate isomerase, IolB|KduI/IolB isomerase|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold GO:0008880|GO:0016861|GO:0019310 G3DSA:2.60.120.10|PF04962|PIRSF036628|SSF51182|TIGR04378 Alide2_2913 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002173|IPR011611|IPR013785|IPR018659|IPR023314|IPR029056|IPR030830 5-Dehydro-2-deoxygluconokinase|5-Dehydro-2-deoxygluconokinase-like superfamily|Aldolase-type TIM barrel|Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Protein of unknown function DUF2090|Ribokinase-like GO:0003824|GO:0016773 G3DSA:2.20.150.10|G3DSA:3.20.20.70|G3DSA:3.40.1190.20|PF00294|PF09863|PS00584|SSF53613|TIGR04382 Alide2_2914 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000281|IPR001347|IPR009057|IPR036388 Helix-turn-helix protein RpiR|Homeobox-like domain superfamily|Sugar isomerase (SIS)|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|SSF46689|SSF53697 Alide2_2915 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003265|IPR004026|IPR009057|IPR010316|IPR011257|IPR018060|IPR018062|IPR023170|IPR035451|IPR037046 Ada DNA repair, metal-binding|Ada-like domain superfamily|DNA binding HTH domain, AraC-type|DNA glycosylase|DNA-3-methyladenine glycosylase AlkA, N-terminal|DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily|HTH domain AraC-type, conserved site|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0003824|GO:0006281|GO:0006284|GO:0006355|GO:0008168|GO:0008270|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.1670.10|G3DSA:1.10.340.30|G3DSA:3.30.310.20|G3DSA:3.40.10.10|PF00730|PF02805|PF06029|PF12833|PS00041|SM00342|SM00478|SM01009|SSF46689|SSF48150|SSF55945|SSF57884 Alide2_2916 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001497|IPR014048|IPR023546|IPR036217|IPR036388|IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily|Methylated DNA-protein cysteine methyltransferase, DNA binding domain|Methylated-DNA--protein-cysteine methyltransferase|Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylated-DNA-[protein]-cysteine S-methyltransferase, active site|Winged helix-like DNA-binding domain superfamily GO:0003824|GO:0003908|GO:0006281 G3DSA:1.10.10.10|G3DSA:3.30.160.70|MF_00772|PF01035|PS00374|SSF46767|SSF53155|TIGR00589 Alide2_2917 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_2918 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000253|IPR001054|IPR008984|IPR029787 Adenylyl cyclase class-3/4/guanylyl cyclase|Forkhead-associated (FHA) domain|Nucleotide cyclase|SMAD/FHA domain superfamily GO:0005515|GO:0009190|GO:0016849|GO:0035556 G3DSA:2.60.200.20|G3DSA:3.30.70.1230|PF00211|PF00498|SM00240|SSF49879|SSF55073 Alide2_2919 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003507|IPR027461|IPR027478|IPR029062 Class I glutamine amidotransferase-like|LD-carboxypeptidase A, C-terminal domain superfamily|Murein tetrapeptide carboxypeptidase, N-terminal|Peptidase family S66 G3DSA:3.40.50.10740|G3DSA:3.50.30.60|PF02016|PIRSF028757|SSF141986|SSF52317 Alide2_2920 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR000639|IPR016192|IPR016193|IPR028883|IPR029058 APOBEC/CMP deaminase, zinc-binding|Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Cytidine deaminase-like|Epoxide hydrolase-like|tRNA-specific adenosine deaminase GO:0002100|GO:0003824|GO:0008251|GO:0008270|GO:0016787 G3DSA:3.40.140.10|G3DSA:3.40.50.1820|MF_00972|PF00561|PF14437|PR00412|PS00903|SSF53474|SSF53927 Alide2_2921 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007396|IPR012349 FMN-binding split barrel|Transcriptional regulator PAI 2-type GO:0048037 G3DSA:2.30.110.10|PF04299|PIRSF010372|SSF50475 Alide2_2922 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001539|IPR020988 Peptidase U32|Peptidase U32, collagenase GO:0006508|GO:0008233 PF01136|PF12392|PS01276|SSF51395 Alide2_2923 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000277|IPR006235|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|O-acetylhomoserine/O-acetylserine sulfhydrylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006520|GO:0016765|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|SSF53383|TIGR01326 Alide2_2924 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005532|IPR016187|IPR017806|IPR024775|IPR034660 C-type lectin fold|DinB-like domain|DinB/YfiT-like putative metalloenzymes|Ergothioneine biosynthesis protein EgtB|Sulfatase-modifying factor enzyme GO:0052699 G3DSA:3.90.1580.10|PF03781|PF12867|SSF109854|SSF56436|TIGR03440 Alide2_2925 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017804|IPR019257|IPR029063|IPR035094 Histidine N-alpha-methyltransferase|Histidine-specific methyltransferase, SAM-dependent|Methyltransferase EgtD-like|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF10017|PIRSF018005|SSF53335|TIGR03438 Alide2_2926 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005618|IPR011250 Outer membrane protein, OmpW|Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0019867 G3DSA:2.40.160.20|PF03922|SSF56925 Alide2_2927 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008526 Inner membrane protein YedI PF05661|PIRSF016660 Alide2_2928 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010073|IPR010918|IPR029062|IPR036604|IPR036676|IPR036921 Class I glutamine amidotransferase-like|Phosphoribosylformylglycinamidine synthase|Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily|PurM-like, C-terminal domain|PurM-like, C-terminal domain superfamily|PurM-like, N-terminal domain superfamily GO:0004642|GO:0006189 G3DSA:1.10.8.750|G3DSA:3.30.1330.10|G3DSA:3.40.50.880|G3DSA:3.90.650.10|MF_00419|PF02769|PF13507|SM01211|SSF109736|SSF52317|SSF55326|SSF56042|SSF82697|TIGR01735 Alide2_2929 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000994|IPR001714|IPR002467|IPR036005 Creatinase/aminopeptidase-like|Peptidase M24|Peptidase M24, methionine aminopeptidase|Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 G3DSA:3.90.230.10|MF_01974|PF00557|PR00599|PS00680|SSF55920|TIGR00500 Alide2_2930 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003607|IPR006674|IPR010043|IPR013546 Bifunctional uridylyltransferase/uridylyl-removing enzyme|HD domain|HD/PDEase domain|PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0006807|GO:0008773|GO:0016779 G3DSA:1.10.3210.10|G3DSA:3.30.70.260|MF_00277|PF01966|PF08335|PIRSF006288|SM00471|SSF109604|SSF55021|SSF81301|SSF81593|TIGR01693 Alide2_2931 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006042|IPR006043|IPR017588 Uric acid permease UacT-like|Xanthine/uracil permease|Xanthine/uracil/vitamin C permease GO:0005215|GO:0016020|GO:0016021|GO:0022857|GO:0055085 PF00860|PS01116|TIGR00801|TIGR03173 Alide2_2932 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023635|IPR036821 Peptide deformylase|Peptide deformylase superfamily G3DSA:3.90.45.10|MF_00163|PF01327|PIRSF004749|PR01576|SSF56420|TIGR00079 Alide2_2933 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007401 Protein of unknown function DUF454 PF04304|PIRSF016789 Alide2_2935 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system PF11903 Alide2_2936 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13671|SSF52540 Alide2_2937 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004439|IPR019818|IPR024084 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic|Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain GO:0000287|GO:0004450|GO:0006099|GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.718.10|PF00180|PS00470|SM01329|SSF53659|TIGR00183 Alide2_2938 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003795|IPR038695 Protein of unknown function DUF192|Saro_0823-like superfamily G3DSA:2.60.120.1140|PF02643 Alide2_2939 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 G3DSA:3.40.718.10|PF03971|PIRSF009407|SSF53659|TIGR00178 Alide2_2940 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001189|IPR019831|IPR019832|IPR019833|IPR036314|IPR036324 Manganese/iron superoxide dismutase|Manganese/iron superoxide dismutase, C-terminal|Manganese/iron superoxide dismutase, C-terminal domain superfamily|Manganese/iron superoxide dismutase, N-terminal|Manganese/iron superoxide dismutase, N-terminal domain superfamily|Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 G3DSA:1.10.287.990|G3DSA:2.40.500.20|PF00081|PF02777|PIRSF000349|PR01703|PS00088|SSF46609|SSF54719 Alide2_2941 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003753|IPR020579|IPR025824 Exonuclease VII, large subunit|Exonuclease VII, large subunit, C-terminal|OB-fold nucleic acid binding domain GO:0003676|GO:0006308|GO:0008855|GO:0009318 MF_00378|PF02601|PF13742|TIGR00237 Alide2_2942 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002898 MotA/TolQ/ExbB proton channel PF01618 Alide2_2943 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 G3DSA:3.30.420.270|PF02472 Alide2_2944 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003758|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 MF_00409|PF02606|SSF52540|TIGR00682 Alide2_2945 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005651|IPR038053 Trm112-like|Uncharacterised protein family UPF0434 G3DSA:2.20.25.10|MF_01187|PF03966|SSF158997 Alide2_2946 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003329|IPR004528|IPR029044 3-deoxy-D-manno-octulosonate cytidylyltransferase|Acylneuraminate cytidylyltransferase|Nucleotide-diphospho-sugar transferases GO:0005737|GO:0008690 G3DSA:3.90.550.10|MF_00057|PF02348|SSF53448|TIGR00466 Alide2_2947 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000850|IPR006259|IPR007862|IPR027417|IPR033690 Adenylate kinase subfamily|Adenylate kinase, active site lid domain|Adenylate kinase, conserved site|Adenylate kinase/UMP-CMP kinase|P-loop containing nucleoside triphosphate hydrolase GO:0004017|GO:0005524|GO:0006139|GO:0016776|GO:0019205 G3DSA:3.40.50.300|MF_00235|PF00406|PF05191|PR00094|PS00113|SSF52540|TIGR01351 Alide2_2948 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006034|IPR020827|IPR027473|IPR027474|IPR027475|IPR036152|IPR037152 Asparaginase/glutaminase, active site 1|Asparaginase/glutaminase, active site 2|Asparaginase/glutaminase-like|Asparaginase/glutaminase-like superfamily|L-asparaginase, C-terminal|L-asparaginase, N-terminal|L-asparaginase, N-terminal domain superfamily GO:0006520 G3DSA:3.40.50.1170|G3DSA:3.40.50.40|PF00710|PIRSF001220|PIRSF500176|PR00139|PS00144|PS00917|SM00870|SSF53774 Alide2_2949 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006197|IPR006199|IPR006200|IPR015927|IPR036286|IPR036388|IPR036390 LexA repressor, DNA-binding domain|LexA/Signal peptidase-like superfamily|Peptidase S24, LexA-like|Peptidase S24/S26A/S26B/S26C|Transcription regulator LexA|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004252|GO:0006355|GO:0006508|GO:0009432|GO:0045892 G3DSA:1.10.10.10|G3DSA:2.10.109.10|MF_00015|PF00717|PF01726|PR00726|SSF46785|SSF51306|TIGR00498 Alide2_2951 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001650|IPR003593|IPR007502|IPR010222|IPR011545|IPR011709|IPR014001|IPR024590|IPR027417 AAA+ ATPase domain|DEAD/DEAH box helicase domain|Domain of unknown function DUF1605|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase-associated domain|P-loop containing nucleoside triphosphate hydrolase|RNA helicase HrpA|RNA helicase HrpA, C-terminal GO:0003676|GO:0004004|GO:0004386|GO:0005524 G3DSA:1.20.120.1080|G3DSA:3.40.50.300|PF00270|PF00271|PF04408|PF07717|PF11898|SM00382|SM00487|SM00490|SM00847|SSF52540|TIGR01967 Alide2_2952 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020613|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00737|SSF53901|TIGR01930 Alide2_2953 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_2954 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 G3DSA:1.10.1760.20|PF02632|PIRSF016661 Alide2_2955 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003339 ABC/ECF transporter, transmembrane component PF02361 Alide2_2956 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417 AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|SM00382|SSF52540 Alide2_2958 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027367 YMGG-like Gly-zipper PF13441 Alide2_2959 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004360|IPR004361|IPR018146|IPR029068 Glyoxalase I|Glyoxalase I, conserved site|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain GO:0004462|GO:0046872 G3DSA:3.10.180.10|PF00903|PS00934|PS00935|SSF54593|TIGR00068 Alide2_2962 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028090 JAB domain, prokaryotic G3DSA:3.40.140.10|PF14464|SSF102712 Alide2_2963 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_2964 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_2965 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007948 Protein of unknown function DUF736 PF05284 Alide2_2966 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_2967 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021341 Protein of unknown function DUF2958 PF11171 Alide2_2968 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018754 Protein of unknown function DUF2285 PF10074 Alide2_2969 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061 Putative DNA-binding domain superfamily PF12728|SSF46955 Alide2_2970 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018777 Replication initiator protein A PF10134 Alide2_2971 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002586|IPR027417 CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF01656|PIRSF009320|SSF52540 Alide2_2972 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010985 Ribbon-helix-helix GO:0006355 SSF47598 Alide2_2973 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021263 Protein of unknown function DUF2840 PF11000 Alide2_2974 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019533|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S26 G3DSA:2.10.109.10|PF10502|SSF51306 Alide2_2975 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021795 Protein of unknown function DUF3363 PF11843 Alide2_2976 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001015|IPR019772 Ferrochelatase|Ferrochelatase, active site GO:0004325|GO:0006783 G3DSA:3.40.50.1400|MF_00323|PF00762|PS00534|SSF53800|TIGR00109 Alide2_2977 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002734|IPR024072 Bacterial bifunctional deaminase-reductase, C-terminal|Dihydrofolate reductase-like domain superfamily GO:0008703|GO:0009231|GO:0055114 G3DSA:3.40.430.10|PF01872|SSF53597 Alide2_2978 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018752 Uncharacterised protein family UPF0753 MF_01871|PF10070 Alide2_2979 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF00361|PR01434 Alide2_2980 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_2981 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005496|IPR022369 Integral membrane protein TerC|Integral membrane protein TerC, riboswitch-linked GO:0016021 PF03741|TIGR03718 Alide2_2982 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007791|IPR029024 Co-chaperone DjlA, N-terminal|TerB-like G3DSA:1.10.3680.10|PF05099|SSF158682 Alide2_2983 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027392 Transcription factor zinc-finger PF13453 Alide2_2984 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_2985 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000889|IPR029759|IPR036249 Glutathione peroxidase|Glutathione peroxidase active site|Thioredoxin-like superfamily GO:0004602|GO:0006979|GO:0055114 G3DSA:3.40.30.10|PF00255|PIRSF000303|PR01011|PS00460|SSF52833 Alide2_2986 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001509|IPR010099|IPR013549|IPR036291 Domain of unknown function DUF1731|Epimerase family protein SDR39U1|NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|PF01370|PF08338|SSF51735|TIGR01777 Alide2_2987 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00081|SSF51735 Alide2_2988 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007357|IPR014729|IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily|Deoxyribodipyrimidine photolyase-related protein|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:1.10.10.1710|G3DSA:1.10.579.10|G3DSA:1.25.40.80|G3DSA:3.40.50.620|PF04244|SSF48173 Alide2_2989 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000782|IPR036378 FAS1 domain|FAS1 domain superfamily G3DSA:2.30.180.10|PF02469|SM00554|SSF82153 Alide2_2990 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005101|IPR006050|IPR014729|IPR036134|IPR036155 Cryptochrome/DNA photolyase, FAD-binding domain|Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily|Cryptochrome/photolyase, N-terminal domain superfamily|DNA photolyase, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:1.10.579.10|G3DSA:1.25.40.80|G3DSA:3.40.50.620|PF00875|PF03441|SSF48173|SSF52425 Alide2_2991 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000566|IPR002446|IPR012674|IPR022271|IPR022272 Calycin|Lipocalin family conserved site|Lipocalin, ApoD type|Lipocalin, bacterial|Lipocalin/cytosolic fatty-acid binding domain GO:0005215 G3DSA:2.40.128.20|PF08212|PIRSF036893|PR01171|PS00213|SSF50814 Alide2_2992 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR006158|IPR009061|IPR036594|IPR036724 Cobalamin (vitamin B12)-binding domain|Cobalamin-binding domain superfamily|MerR-type HTH domain|Methionine synthase domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355|GO:0031419|GO:0046872 G3DSA:1.10.1240.10|G3DSA:1.10.1660.10|G3DSA:3.40.50.280|PF02310|PF13411|SM00422|SSF46955|SSF52242 Alide2_2993 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002937|IPR036188 Amine oxidase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:1.10.3110.10|G3DSA:3.50.50.60|G3DSA:3.90.660.20|PF01593|SSF51905 Alide2_2994 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010775 Protein of unknown function DUF1365 PF07103 Alide2_2995 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003333|IPR029063 Mycolic acid cyclopropane synthase|S-adenosyl-L-methionine-dependent methyltransferase GO:0008610 G3DSA:3.40.50.150|PF02353|PIRSF003085|SSF53335 Alide2_2996 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016087 Chalcone isomerase GO:0016872 PF16036 Alide2_2997 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036259 MFS transporter superfamily G3DSA:1.20.1250.20|PF13347|SSF103473 Alide2_2998 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024409 Protein of unknown function DUF3833 PF12915 Alide2_2999 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00081|SSF51735 Alide2_3000 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032710|IPR037401 NTF2-like domain superfamily|SnoaL-like domain G3DSA:3.10.450.50|PF12680|SSF54427 Alide2_3001 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 Alide2_3002 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002081|IPR005101|IPR006050|IPR014729|IPR018394|IPR036134|IPR036155 Cryptochrome/DNA photolyase class 1|Cryptochrome/DNA photolyase class 1, conserved site, C-terminal|Cryptochrome/DNA photolyase, FAD-binding domain|Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily|Cryptochrome/photolyase, N-terminal domain superfamily|DNA photolyase, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:1.10.579.10|G3DSA:1.25.40.80|G3DSA:3.40.50.620|PF00875|PF03441|PR00147|PS00691|SSF48173|SSF52425 Alide2_3003 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3004 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_3005 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_3006 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009362 Protein of unknown function DUF1016 PF06250 Alide2_3007 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|PF14659|SSF56349 Alide2_3008 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3009 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000887|IPR013785|IPR031337|IPR031338 Aldolase-type TIM barrel|KDPG/KHG aldolase|KDPG/KHG aldolase, active site 1|KDPG/KHG aldolase, active site 2 GO:0003824|GO:0016829 G3DSA:3.20.20.70|PF01081|PS00159|PS00160|SSF51569|TIGR01182 Alide2_3010 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000581|IPR004786|IPR020558|IPR037237 6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site|IlvD/EDD, N-terminal domain GO:0003824|GO:0004456|GO:0009255 G3DSA:3.50.30.80|MF_02094|PF00920|PS00886|PS00887|SSF143975|SSF52016|TIGR01196 Alide2_3011 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004682|IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480|PIRSF006470|TIGR00787 Alide2_3012 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004681|IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter large membrane protein DctM GO:0016021 PF06808|PIRSF006066|TIGR00786 Alide2_3013 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 Alide2_3014 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006001|IPR027417|IPR031322 Carbohydrate kinase, thermoresistant glucokinase|P-loop containing nucleoside triphosphate hydrolase|Shikimate kinase/gluconokinase GO:0005975|GO:0016301 G3DSA:3.40.50.300|PF01202|SSF52540|TIGR01313 Alide2_3015 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain superfamily|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|SM00354|SSF47413|SSF53822 Alide2_3016 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001270|IPR003593|IPR003959|IPR004176|IPR013461|IPR018368|IPR019489|IPR027417|IPR028299|IPR036628 AAA+ ATPase domain|ATP-dependent Clp protease ATP-binding subunit ClpA|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp, N-terminal|Clp, N-terminal domain superfamily|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0019538|GO:0043335 G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|SM00382|SM01086|SSF52540|SSF81923|TIGR02639 Alide2_3017 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003769|IPR014719|IPR022935 ATP-dependent Clp protease adaptor protein ClpS|Adaptor protein ClpS, core|Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like GO:0030163 G3DSA:3.30.1390.10|MF_00302|PF02617|SSF54736 Alide2_3018 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003141|IPR004013|IPR004805|IPR011708|IPR016195|IPR029460 Bacterial DNA polymerase III, alpha subunit|DNA polymerase III, alpha subunit|DNA polymerase, helix-hairpin-helix motif|PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like GO:0003824|GO:0006260|GO:0008408 G3DSA:1.10.10.1600|G3DSA:3.20.20.140|PF02811|PF07733|PF14579|SM00481|SSF89550|TIGR00594 Alide2_3019 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990|IPR017689|IPR039565 Outer membrane lipoprotein BamD-like|Outer membrane protein assembly factor BamD|Tetratricopeptide-like helical domain superfamily GO:0005515 G3DSA:1.25.40.10|MF_00922|PF13525|SSF48452|TIGR03302 Alide2_3020 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006555|IPR010614|IPR027417 ATP-dependent helicase, C-terminal|DEAD2|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006139|GO:0008026|GO:0016818 G3DSA:3.40.50.300|PF06733|PF13307|SM00491|SSF52540 Alide2_3021 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001932|IPR036457 PPM-type phosphatase domain|PPM-type phosphatase domain superfamily GO:0003824 G3DSA:3.60.40.10|PF13672|SM00331|SM00332|SSF81606 Alide2_3023 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005654|IPR027417 ATPase, AFG1-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF03969|SSF52540 Alide2_3024 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001100|IPR004099|IPR006258|IPR016156|IPR023753|IPR036188 Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0004148|GO:0009055|GO:0016491|GO:0045454|GO:0050660|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|SSF51905|SSF55424|TIGR01350 Alide2_3025 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR001078|IPR003016|IPR004167|IPR006255|IPR011053|IPR023213|IPR036625 2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain superfamily|Dihydrolipoamide succinyltransferase|E3-binding domain superfamily|Peripheral subunit-binding domain|Single hybrid motif GO:0004149|GO:0006099|GO:0016746|GO:0045252 G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|SSF47005|SSF51230|SSF52777|TIGR01347 Alide2_3026 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001017|IPR005475|IPR011603|IPR029061|IPR031717|IPR032106 2-oxoglutarate dehydrogenase E1 component|2-oxoglutarate dehydrogenase E1 component, N-terminal domain|Dehydrogenase, E1 component|Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal|Thiamin diphosphate-binding fold|Transketolase-like, pyrimidine-binding domain GO:0004591|GO:0006099|GO:0016624|GO:0030976|GO:0055114 G3DSA:1.10.287.1150|G3DSA:3.40.50.11610|G3DSA:3.40.50.12470|G3DSA:3.40.50.970|PF00676|PF02779|PF16078|PF16870|PIRSF000157|SM00861|SSF52518|TIGR00239 Alide2_3027 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002549 Transmembrane protein TqsA-like PF01594 Alide2_3028 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3030 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010839 Acyclic terpene utilisation PF07287 Alide2_3031 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3032 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006015|IPR006016 Universal stress protein A|UspA G3DSA:3.40.50.12370|PF00582|PR01438|SSF52402 Alide2_3033 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540 Alide2_3034 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR025966|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Oligopeptide transport permease C-like, N-terminal domain GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 Alide2_3035 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_3036 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007318 Phospholipid methyltransferase G3DSA:1.20.120.1630|PD049902|PF04191 Alide2_3037 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|PF00496|PIRSF002741|SSF53850 Alide2_3038 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR014358|IPR036291 Enoyl-[acyl-carrier-protein] reductase (NADH)|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR GO:0004318|GO:0006633|GO:0055114 G3DSA:3.40.50.720|PF13561|PIRSF000094|PR00081|SSF51735 Alide2_3039 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_3040 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007420 Protein of unknown function DUF465 G3DSA:1.20.58.660|PF04325 Alide2_3041 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012340|IPR029319 DNA ligase, OB-like domain|Nucleic acid-binding, OB-fold G3DSA:3.30.1490.70|G3DSA:3.30.470.30|PF14743|SSF50249|SSF56091 Alide2_3042 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005496|IPR022301 Integral membrane protein TerC|Integral membrane protein YjbE GO:0016021 PF03741|TIGR03717 Alide2_3043 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000310|IPR005308|IPR008286|IPR011193|IPR015421|IPR015422|IPR015424|IPR036633 Orn/Lys/Arg decarboxylase, C-terminal|Orn/Lys/Arg decarboxylase, C-terminal domain superfamily|Orn/Lys/Arg decarboxylase, N-terminal|Orn/Lys/Arg decarboxylase, major domain|Ornithine/lysine/arginine decarboxylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0005737|GO:0006520|GO:0016831 G3DSA:3.40.50.2300|G3DSA:3.40.640.10|G3DSA:3.90.100.10|G3DSA:3.90.1150.10|PF01276|PF03709|PF03711|PIRSF009393|PS00703|SSF53383|SSF55904 Alide2_3045 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001107|IPR001972|IPR032435|IPR036013 Band 7 domain|Band 7, C-terminal extension|Band 7/SPFH domain superfamily|Stomatin family GO:0016020 G3DSA:3.30.479.30|PF01145|PF16200|PR00721|SM00244|SSF117892 Alide2_3046 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3047 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011766|IPR012000|IPR012001|IPR029035|IPR029061 DHS-like NAD/FAD-binding domain superfamily|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0030976 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|SSF52467|SSF52518 Alide2_3050 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010985 Ribbon-helix-helix GO:0006355 SSF47598 Alide2_3052 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_3053 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_3054 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029470 PD-(D/E)XK nuclease superfamily 4 PF14281 Alide2_3055 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002559|IPR025161 Putative transposase IS4/IS5 family|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|PF13340 Alide2_3056 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001604|IPR020821 DNA/RNA non-specific endonuclease|Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 G3DSA:3.40.570.10|PF01223|SM00477|SM00892|SSF54060 Alide2_3057 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004291|IPR024463|IPR024474|IPR039552 Transposase IS66, C-terminal|Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66 PF03050|PF13005|PF13007|PF13817 Alide2_3058 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008878 Transposase IS66, Orf2 PF05717 Alide2_3059 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR010921 Transposase IS3/IS911family|Trp repressor/replication initiator GO:0003677|GO:0004803|GO:0006313|GO:0043565 PF01527|SSF48295 Alide2_3061 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017686|IPR026325 Phage/plasmid-like protein|Protein of unknown function DUF932 PF06067|TIGR03299 Alide2_3062 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011335|IPR011604|IPR017482|IPR019080 Exonuclease, phage-type/RecB, C-terminal|Putative phage-type endonuclease|Restriction endonuclease type II-like|YqaJ viral recombinase G3DSA:3.90.320.10|PF09588|SSF52980|TIGR03033 Alide2_3066 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018649 SHOCT domain PF09851 Alide2_3067 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_3069 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006133|IPR006134|IPR006172|IPR012337|IPR017964|IPR023211|IPR036397 DNA polymerase, palm domain superfamily|DNA-directed DNA polymerase, family B|DNA-directed DNA polymerase, family B, conserved site|DNA-directed DNA polymerase, family B, exonuclease domain|DNA-directed DNA polymerase, family B, multifunctional domain|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0000166|GO:0003676|GO:0003677|GO:0003887 G3DSA:1.10.132.60|G3DSA:2.40.50.590|G3DSA:3.30.420.10|G3DSA:3.30.70.2250|G3DSA:3.90.1600.10|PF00136|PF03104|PR00106|PS00116|SM00486|SSF53098|SSF56672 Alide2_3070 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF11726 Alide2_3071 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061|IPR010260 DNA-binding transcriptional activator AlpA|Putative DNA-binding domain superfamily PF05930|SSF46955 Alide2_3073 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 Alide2_3074 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000189|IPR006597|IPR008258|IPR011990|IPR023346 Lysozyme-like domain superfamily|Prokaryotic transglycosylase, active site|Sel1-like repeat|Tetratricopeptide-like helical domain superfamily|Transglycosylase SLT domain 1 GO:0000270|GO:0005515|GO:0008933|GO:0016020 G3DSA:1.10.530.10|G3DSA:1.25.40.10|PF01464|PF08238|PS00922|SM00671|SSF53955|SSF81901 Alide2_3079 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_3080 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_3081 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR029032 AhpD-like|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118 Alide2_3082 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_3083 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_3084 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3085 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3086 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_3087 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 Alide2_3088 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00737|SSF53901 Alide2_3089 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_3090 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR036271 Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|SSF46689|SSF48498 Alide2_3092 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005669|IPR034408 Sulphate/thiosulphate-binding site|Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419|GO:1901681 G3DSA:3.40.190.10|PF13531|PS00757|SSF53850|TIGR00971 Alide2_3093 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007457|IPR036766 Fe(II) trafficking protein YggX|Fe(II) trafficking protein YggX superfamily GO:0005506 G3DSA:1.10.3880.10|MF_00686|PD029191|PF04362|PIRSF029827|SSF111148 Alide2_3094 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005115 Uncharacterised domain UPF0126 PF03458 Alide2_3095 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR008471|IPR017610|IPR023032|IPR029063|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily|MnmC-like methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase|tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC|tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0004808|GO:0008033|GO:0008168|GO:0016491|GO:0016645|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.40.50.150|G3DSA:3.50.50.60|MF_01102|PF01266|PF05430|SSF51971|SSF53335|TIGR03197 Alide2_3096 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 Alide2_3097 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005117|IPR006067|IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain|Nitrite/Sulfite reductase ferredoxin-like domain superfamily|Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 G3DSA:3.30.413.10|PF01077|PF03460|SSF55124|SSF56014 Alide2_3098 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008318 Uncharacterised conserved protein UCP030820 PF06073|PIRSF030820 Alide2_3099 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002500|IPR014729 Phosphoadenosine phosphosulphate reductase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003824 G3DSA:3.40.50.620|PF01507|SSF52402 Alide2_3100 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002500|IPR011784|IPR014729 Phosphoadenosine phosphosulphate reductase|Rossmann-like alpha/beta/alpha sandwich fold|Sulphate adenylyltransferase, small subunit GO:0003824|GO:0004781|GO:0019419 G3DSA:3.40.50.620|PF01507|PIRSF002936|SSF52402 Alide2_3101 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000795|IPR009000|IPR009001|IPR011779|IPR027417|IPR031157 P-loop containing nucleoside triphosphate hydrolase|Sulphate adenylyltransferase, large subunit|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation protein, beta-barrel domain superfamily GO:0003924|GO:0005525|GO:0006790 G3DSA:2.40.30.10|G3DSA:3.40.50.300|PF00009|PR00315|PS00301|SSF50447|SSF50465|SSF52540|TIGR02034 Alide2_3102 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000813|IPR017896|IPR017900|IPR022569 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|7Fe ferredoxin|Ferredoxin, C-terminal GO:0009055 G3DSA:3.30.70.20|PF00037|PF11953|PR00354|PS00198|SSF54862 Alide2_3103 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022890|IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0016491|GO:0055114 G3DSA:3.50.50.60|MF_01685|PF07992|PR00368|PR00411|SSF51905 Alide2_3104 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001248|IPR038271 Purine-cytosine permease|Purine-cytosine permease superfamily GO:0016020|GO:0022857|GO:0055085 G3DSA:1.10.4160.10|PF02133 Alide2_3105 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003646|IPR010466 Protein of unknown function DUF1058|SH3-like domain, bacterial-type G3DSA:2.30.30.40|PF06347|PF08239|SM00287 Alide2_3106 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004399|IPR013749|IPR029056 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase|Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Ribokinase-like GO:0008972|GO:0009228 G3DSA:3.40.1190.20|PF08543|SSF53613|TIGR00097 Alide2_3107 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR012727|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily|Glycine oxidase ThiO GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|SSF54373|TIGR02352 Alide2_3108 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003749|IPR010035|IPR012675|IPR016155 Beta-grasp domain superfamily|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|Sulfur carrier ThiS/MoaD-like|ThiS, thiamine-biosynthesis G3DSA:3.10.20.30|PF02597|SSF54285|TIGR01683 Alide2_3109 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008867|IPR013785|IPR033983 Aldolase-type TIM barrel|Thiazole synthase|Thiazole synthase ThiG GO:0003824|GO:0009228 G3DSA:3.20.20.70|MF_00443|PF05690|SSF110399 Alide2_3110 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013785|IPR022998|IPR036206 Aldolase-type TIM barrel|Thiamin phosphate synthase superfamily|Thiamine phosphate synthase/TenI GO:0003824 G3DSA:3.20.20.70|PF02581|SSF51391 Alide2_3112 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006108|IPR006176|IPR008927|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.50|G3DSA:3.30.750.190|G3DSA:3.40.50.720|PF00725|PF02737|SSF48179|SSF51735 Alide2_3113 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_3114 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SM00419|SSF46785|SSF51206 Alide2_3115 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002575|IPR011009 Aminoglycoside phosphotransferase|Protein kinase-like domain superfamily G3DSA:3.30.200.20|G3DSA:3.90.1200.10|PF01636|SSF56112 Alide2_3116 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_3117 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002872|IPR005933|IPR010985|IPR013321|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR024082|IPR024089|IPR025703|IPR029041 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Arc-type ribbon-helix-helix|Bifunctional protein PutA|Delta-1-pyrroline-5-carboxylate dehydrogenase 3|FAD-linked oxidoreductase-like|Proline dehydrogenase PutA, domain I/II|Proline dehydrogenase PutA, domain II|Proline dehydrogenase domain|Ribbon-helix-helix GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0006561|GO:0010133|GO:0016491|GO:0016620|GO:0055114 G3DSA:1.10.1220.10|G3DSA:3.20.20.220|G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PF01619|PF14850|PIRSF000197|PS00070|SSF47598|SSF51730|SSF53720|SSF81935|TIGR01238 Alide2_3118 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001734|IPR011851|IPR018212|IPR038377 Sodium/glucose symporter superfamily|Sodium/proline symporter|Sodium/solute symporter|Sodium/solute symporter, conserved site GO:0005298|GO:0006814|GO:0015824|GO:0016020|GO:0016021|GO:0022857|GO:0031402|GO:0055085 G3DSA:1.20.1730.10|PF00474|PS00457|TIGR00813|TIGR02121 Alide2_3119 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_3120 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001967|IPR012338|IPR018044 Beta-lactamase/transpeptidase-like|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 G3DSA:3.40.710.10|PF00768|PR00725|SSF56601 Alide2_3121 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000891|IPR002034|IPR005671|IPR013709|IPR013785|IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain|2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily|2-isopropylmalate synthase, bacterial-type|Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase GO:0003824|GO:0003852|GO:0009098|GO:0019752|GO:0046912 G3DSA:1.10.238.260|G3DSA:3.20.20.70|G3DSA:3.30.160.270|MF_01025|PF00682|PF08502|PS00815|PS00816|SM00917|SSF110921|SSF51569|TIGR00973 Alide2_3122 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000891|IPR002034|IPR005668|IPR013709|IPR013785|IPR036230 2-isopropylmalate synthase|2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain|2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily|Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase GO:0003824|GO:0003852|GO:0009098|GO:0019752|GO:0046912 G3DSA:3.20.20.70|G3DSA:3.30.160.270|MF_00572|PF00682|PF08502|PS00815|PS00816|SM00917|SSF110921|SSF51569|SSF89000|TIGR00970 Alide2_3123 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3124 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000486|IPR004360|IPR029068 Extradiol ring-cleavage dioxygenase, class I /II|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain GO:0003824|GO:0006725|GO:0008198|GO:0055114 G3DSA:3.10.180.10|PF00903|PS00082|SSF54593 Alide2_3125 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|PS00217|SSF103473 Alide2_3126 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 Alide2_3127 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR005955|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Glutathione S-transferases, class Zeta|Thioredoxin-like superfamily GO:0003824|GO:0005515|GO:0005737|GO:0009072 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13417|SSF47616|SSF52833|TIGR01262 Alide2_3128 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000462|IPR004533 CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--serine O-phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 G3DSA:1.20.120.1760|PF01066|PS00379|TIGR00473 Alide2_3129 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000506|IPR008927|IPR013023|IPR013116|IPR014359|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|Ketol-acid reductoisomerase|Ketol-acid reductoisomerase, C-terminal|Ketol-acid reductoisomerase, N-terminal|Ketol-acid reductoisomerase, prokaryotic|NAD(P)-binding domain superfamily GO:0004455|GO:0009082|GO:0016491|GO:0050661|GO:0055114 G3DSA:1.10.3730.40|G3DSA:3.40.50.720|MF_00435|PF01450|PF07991|PIRSF000116|SSF48179|SSF51735|TIGR00465 Alide2_3130 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004789|IPR019455|IPR027271 Acetolactate synthase, small subunit|Acetolactate synthase, small subunit, C-terminal|Acetolactate synthase/Transcription factor NikR, C-terminal GO:0003984|GO:0009082 G3DSA:3.30.70.1150|G3DSA:3.30.70.260|PD002844|PF10369|PF13710|SSF55021|TIGR00119 Alide2_3131 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011766|IPR012000|IPR012001|IPR012846|IPR029035|IPR029061 Acetolactate synthase, large subunit, biosynthetic|DHS-like NAD/FAD-binding domain superfamily|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0003824|GO:0003984|GO:0009082|GO:0030976|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|SSF52467|SSF52518|TIGR00118 Alide2_3132 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF08281|SSF88659|SSF88946|TIGR02937 Alide2_3133 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022064 Protein of unknown function DUF3619 PF12279 Alide2_3134 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021455 Protein of unknown function DUF3106 PF11304 Alide2_3135 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010432 RDD PF06271 Alide2_3136 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000829|IPR036945 DAGK family|Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0008654|GO:0016020|GO:0016301 G3DSA:1.10.3830.10|PF01219 Alide2_3137 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005269|IPR031100 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG|LOG family G3DSA:3.40.50.450|PF03641|SSF102405|TIGR00730 Alide2_3138 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002187|IPR002332|IPR011322|IPR015867|IPR017918 Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein P-II, urydylation site|Nitrogen regulatory protein PII|Nitrogen regulatory protein PII, conserved site|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0006808|GO:0030234 G3DSA:3.30.70.120|PF00543|PIRSF039144|PR00340|PS00496|PS00638|SM00938|SSF54913 Alide2_3139 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003010|IPR003694|IPR014445|IPR014729|IPR022310|IPR036526 Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily|Glutamine-dependent NAD(+) synthetase|NAD(+) synthetase|NAD/GMP synthase|Rossmann-like alpha/beta/alpha sandwich fold GO:0003952|GO:0005524|GO:0006807|GO:0009435 G3DSA:3.40.50.620|G3DSA:3.60.110.10|MF_02090|PF00795|PF02540|PIRSF006630|SSF52402|SSF56317|TIGR00552 Alide2_3141 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007434|IPR016181 Acyl-CoA N-acyltransferase|Peptidogalycan biosysnthesis/recognition G3DSA:3.40.630.30|PF04339|SSF55729 Alide2_3142 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003660|IPR004089|IPR004090|IPR024478 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF00672|PF12729|PR00260|SM00283|SM00304|SSF58104 Alide2_3143 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002545|IPR036061 CheW-like domain|CheW-like domain superfamily GO:0006935|GO:0007165 G3DSA:2.30.30.40|G3DSA:2.40.50.180|PF01584|SM00260|SSF50341 Alide2_3144 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008162|IPR036649 Inorganic pyrophosphatase|Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 G3DSA:3.90.80.10|MF_00209|PF00719|PS00387|SSF50324 Alide2_3145 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 MF_01129|PF03030|PIRSF001265|TIGR01104 Alide2_3146 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720 Alide2_3147 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021312 Protein of unknown function DUF2889 PF11136 Alide2_3148 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029095 NarX-like, N-terminal PF13675 Alide2_3149 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000385|IPR006638|IPR007197|IPR010505|IPR013483|IPR013785 Aldolase-type TIM barrel|Elp3/MiaB/NifB|MoaA/nifB/pqqE, iron-sulphur binding, conserved site|Molybdenum cofactor biosynthesis protein A|Molybdenum cofactor synthesis C-terminal|Radical SAM GO:0003824|GO:0006777|GO:0019008|GO:0046872|GO:0051536|GO:0051539 G3DSA:3.20.20.70|MF_01225_B|PF04055|PF06463|PF13353|PS01305|SM00729|SSF102114|TIGR02666 Alide2_3150 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013482|IPR025877|IPR029044 MobA-like NTP transferase|Molybdenum cofactor guanylyltransferase|Nucleotide-diphospho-sugar transferases GO:0003824|GO:0006777 G3DSA:3.90.550.10|MF_00316|PF12804|SSF53448|TIGR02665 Alide2_3151 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF00583|SSF55729 Alide2_3152 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001453|IPR005110|IPR005111|IPR036135|IPR036425|IPR036688 MoaB/Mog domain|MoaB/Mog-like domain superfamily|MoeA, C-terminal, domain IV|MoeA, C-terminal, domain IV superfamily|MoeA, N-terminal and linker domain|MoeA, N-terminal and linker domain superfamily GO:0032324 G3DSA:2.170.190.11|G3DSA:2.40.340.10|G3DSA:3.40.980.10|G3DSA:3.90.105.10|PF00994|PF03453|PF03454|SM00852|SSF53218|SSF63867|SSF63882|TIGR00177 Alide2_3153 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013766|IPR036249 Thioredoxin domain|Thioredoxin-like superfamily GO:0045454 G3DSA:3.40.30.10|PF00085|SSF52833 Alide2_3155 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3156 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005493|IPR036704 Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.100|PF03737|SSF89562 Alide2_3157 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 Alide2_3158 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3159 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005493|IPR036704 Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.100|PF03737|SSF89562 Alide2_3160 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005493|IPR036704 Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.100|PF03737|SSF89562 Alide2_3161 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004838|IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PS00105|SSF53383 Alide2_3162 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002156|IPR012337|IPR022892|IPR036397 Ribonuclease H domain|Ribonuclease H superfamily|Ribonuclease H-like superfamily|Ribonuclease HI GO:0003676|GO:0004523 G3DSA:3.30.420.10|MF_00042|PF00075|SSF53098 Alide2_3163 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF08241|SSF53335 Alide2_3164 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001018|IPR001279|IPR017782|IPR032282|IPR036866 Beta-lactamase, class-B, conserved site|Hydroxyacylglutathione hydrolase|Hydroxyacylglutathione hydrolase, C-terminal domain|Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like GO:0004416|GO:0008270|GO:0008800|GO:0017001|GO:0019243 G3DSA:3.60.15.10|MF_01374|PF00753|PF16123|PIRSF005457|PS00743|SM00849|SSF56281|TIGR03413 Alide2_3165 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000189|IPR008258|IPR018392|IPR023346|IPR036779 LysM domain|LysM domain superfamily|Lysozyme-like domain superfamily|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1 GO:0000270|GO:0008933|GO:0016020 G3DSA:1.10.530.10|G3DSA:3.10.350.10|PF01464|PF01476|PS00922|SSF53955|SSF54106 Alide2_3166 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021446 Protein of unknown function DUF3096 PF11295 Alide2_3167 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015168 SsuA/THI5-like G3DSA:3.40.190.10|PF09084|SSF53850 Alide2_3168 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 Alide2_3169 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 PF10410 Alide2_3170 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061 Putative DNA-binding domain superfamily SSF46955 Alide2_3171 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF14090 Alide2_3179 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000594|IPR035985 THIF-type NAD/FAD binding fold|Ubiquitin-activating enzyme GO:0008641 G3DSA:3.40.50.720|PF00899|SSF69572 Alide2_3180 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990|IPR014162|IPR032519|IPR034706|IPR039565 Cell division coordinator CpoB|Cell division coordinator CpoB, C-terminal|Outer membrane lipoprotein BamD-like|Tetratricopeptide-like helical domain superfamily|YbgF, trimerisation domain GO:0005515|GO:0051301|GO:0070206 G3DSA:1.25.40.10|MF_02066|PF13525|PF16331|SSF48452|TIGR02795 Alide2_3181 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006664|IPR006665|IPR006690|IPR014169|IPR036737|IPR039001 OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, OmpA-like, conserved site|Outer membrane protein, bacterial|Peptidoglycan-associated lipoprotein|Peptidoglycan-associated lipoprotein, C-terminal GO:0009279|GO:0016021|GO:0051301 G3DSA:3.30.1330.60|MF_02204|PF00691|PR01021|PS01068|SSF103088|TIGR02802 Alide2_3182 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007195|IPR011042|IPR011659|IPR014167|IPR036752 Six-bladed beta-propeller, TolB-like|Tol-Pal system protein TolB|TolB, N-terminal|TolB, N-terminal domain superfamily|WD40-like Beta Propeller GO:0015031|GO:0017038|GO:0042597 G3DSA:2.120.10.30|G3DSA:3.40.50.10070|MF_00671|PF04052|PF07676|SSF52964|SSF69304|TIGR02800 Alide2_3183 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR011527|IPR011917|IPR017871|IPR027417|IPR036640 AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter type 1, transmembrane domain superfamily|ABC transporter, conserved site|ABC transporter, lipid A export, MsbA|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016021|GO:0016887|GO:0034040|GO:0042626|GO:0055085 G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|SM00382|SSF52540|SSF90123|TIGR02203 Alide2_3184 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR001882|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR016185 Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin-binding site|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif|Single hybrid motif GO:0005524 G3DSA:2.40.50.100|G3DSA:3.30.470.130|PF00289|PF00364|PF02785|PF02786|PS00188|PS00867|SM00878|SSF51230|SSF51246|SSF52440|SSF56059 Alide2_3185 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003778|IPR003833|IPR010016|IPR029000 Carboxyltransferase domain, subdomain A and B|Carboxyltransferase domain, subdomain C and D|Cyclophilin-like domain superfamily|KipI family G3DSA:2.40.100.10|G3DSA:3.30.1360.40|PF02626|PF02682|SM00796|SM00797|SSF160467|SSF50891|TIGR00370|TIGR00724 Alide2_3186 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009906|IPR016938|IPR038021 D-glutamate cyclase|Putative hydro-lyase|Uncharacterised protein family UPF0317 G3DSA:3.30.2040.10|G3DSA:3.40.1640.10|MF_01830|PF07286|PIRSF029755|SSF160920 Alide2_3187 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005501|IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel|UPF0271 family, LamB/YcsF/PxpA GO:0003824|GO:0005975 G3DSA:3.20.20.370|MF_00691|PF03746|SSF88713 Alide2_3188 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|PS00217|SSF103473 Alide2_3189 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 Alide2_3190 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016772 Uncharacterised conserved protein UCP020408 PF10087 Alide2_3192 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002110|IPR020683|IPR036770 Ankyrin repeat|Ankyrin repeat-containing domain|Ankyrin repeat-containing domain superfamily GO:0005515 G3DSA:1.25.40.20|PF12796|SM00248|SSF48403 Alide2_3193 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001130|IPR015991|IPR018228|IPR032466 Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family|Uncharacterised hydrolase TatD-type GO:0004536|GO:0016788|GO:0016888 G3DSA:3.20.20.140|PF01026|PIRSF005902|PS01091|PS01137|SSF51556|TIGR00010 Alide2_3194 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009875 PilZ domain GO:0035438 G3DSA:2.40.10.220|PF07238 Alide2_3195 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13177|SSF52540 Alide2_3196 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018094|IPR027417|IPR039430 P-loop containing nucleoside triphosphate hydrolase|Thymidylate kinase|Thymidylate kinase-like domain GO:0004798|GO:0005524|GO:0006233 G3DSA:3.40.50.300|MF_00165|PF02223|SSF52540|TIGR00041 Alide2_3197 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003770 Endolytic murein transglycosylase G3DSA:3.30.160.60|MF_02065|PF02618|TIGR00247 Alide2_3198 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006222|IPR013977|IPR017703|IPR028896 Aminomethyltransferase, folate-binding domain|Aminomethyltransferase-like|Glycine cleavage T-protein, C-terminal barrel domain|YgfZ/GcvT conserved site G3DSA:2.40.30.160|G3DSA:3.30.70.1400|PF01571|PF08669|PIRSF006487|SSF103025|TIGR03317 Alide2_3199 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002125|IPR016192|IPR016193 APOBEC/CMP deaminase, zinc-binding|Cytidine and deoxycytidylate deaminase domain|Cytidine deaminase-like GO:0003824|GO:0008270|GO:0016787 G3DSA:3.40.140.10|PF00383|PS00903|SSF53927 Alide2_3200 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_3201 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 Alide2_3202 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR036388 CheY-like superfamily|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|SM00421|SM00448|SSF52172 Alide2_3203 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005624|IPR038084 GlcG-like domain superfamily|Haem-degrading G3DSA:3.30.450.150|PF03928|SSF143744 Alide2_3204 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR006683|IPR006684|IPR016181|IPR029069 Acyl-CoA N-acyltransferase|Acyl-CoA thioester hydrolase YbgC/YbaW family|GNAT domain|HotDog domain superfamily|Thioesterase domain GO:0016787 G3DSA:3.10.129.10|G3DSA:3.40.630.30|PF03061|PF13673|SSF54637|SSF55729|TIGR00051 Alide2_3205 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002168|IPR013094|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-3|Lipase, GDXG, putative histidine active site GO:0016787 G3DSA:3.40.50.1820|PF07859|PS01173|SSF53474 Alide2_3206 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|SSF56529 Alide2_3207 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013976 Metal-dependent hydrolase HDOD G3DSA:1.10.3210.10|PF08668|SSF109604 Alide2_3208 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_3209 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 Alide2_3210 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3211 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3212 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_3213 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002020|IPR016142|IPR016143|IPR036969 Citrate synthase|Citrate synthase superfamily|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain GO:0046912 G3DSA:1.10.230.10|G3DSA:1.10.580.10|PF00285|PR00143|SSF48256 Alide2_3214 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain superfamily|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PS00356|SM00354|SSF47413|SSF53822 Alide2_3215 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082 Alide2_3216 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_3217 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SSF51735 Alide2_3218 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3219 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039 Thiolase|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PIRSF000429|SSF53901 Alide2_3220 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002878|IPR012340|IPR022002 Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold PF01796|PF12172|SSF50249 Alide2_3221 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3222 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003029|IPR006641|IPR010994|IPR012337|IPR012340|IPR018974|IPR022967|IPR023319|IPR023323|IPR032639|IPR037027 Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribonuclease H-like superfamily|RuvA domain 2-like|S1 domain|Tex protein, YqgF-like domain|Tex-like domain superfamily|Tex-like protein, HTH domain superfamily|Tex-like protein, N-terminal|YqgF/RNase H-like domain|YqgF/RNase H-like domain superfamily GO:0003676|GO:0006139 G3DSA:1.10.10.650|G3DSA:1.10.150.310|G3DSA:1.10.3500.10|G3DSA:2.40.50.140|G3DSA:3.30.420.140|PF00575|PF09371|PF12836|PF16921|SM00316|SM00732|SSF158832|SSF47781|SSF50249|SSF53098 Alide2_3224 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002763|IPR036520 Protein of unknown function DUF72|UPF0759 superfamily G3DSA:3.20.20.410|PF01904|SSF117396 Alide2_3225 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006664|IPR006665|IPR036737 OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial GO:0009279|GO:0016021 G3DSA:3.30.1330.60|PF00691|PR01021|SSF103088 Alide2_3226 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006840|IPR036568 Gamma-glutamyl cyclotransferase-like superfamily|Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 G3DSA:3.10.490.10|PF04752|SSF110857 Alide2_3227 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000659|IPR011576|IPR012349|IPR019576|IPR019740 FMN-binding split barrel|Pyridoxamine 5'-phosphate oxidase|Pyridoxamine 5'-phosphate oxidase, conserved site|Pyridoxamine 5'-phosphate oxidase, putative|Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0004733|GO:0008615|GO:0010181|GO:0016638|GO:0048037|GO:0055114 G3DSA:2.30.110.10|MF_01629|PF01243|PF10590|PIRSF000190|PS01064|SSF50475|TIGR00558 Alide2_3228 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004776 Membrane transport protein GO:0016021|GO:0055085 PF03547 Alide2_3229 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003370|IPR014047 Chromate transporter|Chromate transporter, long chain GO:0015109|GO:0015703 PF02417|PIRSF004810|TIGR00937 Alide2_3231 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 Alide2_3232 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002569|IPR036509 Peptide methionine sulphoxide reductase MsrA|Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 G3DSA:3.30.1060.10|MF_01401|PF01625|SSF55068|TIGR00401 Alide2_3233 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR011075|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily|Tetracycline transcriptional regulator, TetR-related, C-terminal GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PF16859|PR00455|SSF46689|SSF48498 Alide2_3234 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020598|IPR029063 Ribosomal RNA adenine methylase transferase, N-terminal|S-adenosyl-L-methionine-dependent methyltransferase GO:0000154|GO:0000179|GO:0008649 G3DSA:3.40.50.150|PF01135|SM00650|SSF53335 Alide2_3235 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 Alide2_3236 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010130 Outer membrane efflux protein|Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954|TIGR01844 Alide2_3237 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001668 Plasmid recombination enzyme GO:0003677|GO:0005727|GO:0006310 G3DSA:3.30.930.30|PF01076 Alide2_3238 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349 Alide2_3239 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_3240 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005025|IPR029039 Flavoprotein-like superfamily|NADPH-dependent FMN reductase-like GO:0016491 G3DSA:3.40.50.360|PF03358|SSF52218 Alide2_3241 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878|IPR036250|IPR037069 Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|SSF47203|SSF56645 Alide2_3242 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 Alide2_3243 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 Alide2_3244 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 Alide2_3245 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00737|SSF53901|TIGR01930 Alide2_3246 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR006108|IPR006176|IPR008927|IPR018376|IPR029045|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site|NAD(P)-binding domain superfamily GO:0003824|GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.50|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|PS00166|SSF48179|SSF51735|SSF52096 Alide2_3247 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_3248 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_3249 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3250 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3251 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_3252 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_3253 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003846 Uncharacterised protein family UPF0061 MF_00692|PF02696 Alide2_3254 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002579|IPR011057 Mss4-like superfamily|Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 G3DSA:2.170.150.20|PF01641|SSF51316|TIGR00357 Alide2_3255 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006008 Intracellular septation protein A GO:0016021 MF_00189|PF04279|TIGR00997 Alide2_3256 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002634|IPR036065 BolA protein|BolA-like superfamily G3DSA:3.30.300.90|PF01722|PIRSF003113|SSF82657 Alide2_3257 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027304 Trigger factor/SurA domain superfamily G3DSA:3.10.50.40|PF13616|SSF109998|SSF54534 Alide2_3258 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 PF06305 Alide2_3259 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011990|IPR019734|IPR030865 Lipopolysaccharide assembly protein B|Tetratricopeptide repeat|Tetratricopeptide-like helical domain superfamily GO:0005515|GO:0008653 G3DSA:1.25.40.10|MF_00994|PF13432|PF14559|SM00028|SSF48452 Alide2_3260 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010994 RuvA domain 2-like G3DSA:1.10.150.320|PF12836|SSF47781 Alide2_3261 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001516|IPR001750|IPR007182|IPR025383 Domain of unknown function DUF4040|NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit|Na+/H+ antiporter MnhB subunit-related protein PF00361|PF00662|PF04039|PF13244|PR01434 Alide2_3262 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like PF00420 Alide2_3263 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit PF00361 Alide2_3264 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 PF01899|PIRSF019239 Alide2_3265 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 PF04066|PIRSF028784 Alide2_3266 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 PF03334 Alide2_3267 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.40.630.10|SSF53187 Alide2_3268 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003691 Putative fluoride ion transporter CrcB GO:0016021 MF_00454|PF02537|TIGR00494 Alide2_3269 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005269|IPR031100 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG|LOG family G3DSA:3.40.50.450|PF03641|SSF102405|TIGR00730 Alide2_3270 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001958|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PR01035|SSF103473 Alide2_3271 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003798 DNA recombination RmuC PF02646 Alide2_3272 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006139|IPR006140|IPR029752|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|PS00065|SSF51735|SSF52283 Alide2_3273 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR031566 Putative citrate transporter PF16980 Alide2_3274 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006406|IPR007229|IPR036068 Nicotinate phosphoribosyltransferase|Nicotinate phosphoribosyltransferase family|Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0004516|GO:0009435|GO:0019357 G3DSA:3.20.140.10|MF_00570|PF04095|PIRSF000484|SSF51690|SSF54675|TIGR01514 Alide2_3275 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006683|IPR029069 HotDog domain superfamily|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637 Alide2_3276 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010127|IPR018968 Phasin|Phasin, subfamily 1 PF09361|TIGR01841 Alide2_3277 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006059|IPR006061|IPR026045 Bacterial extracellular solute-binding protein|Ferric binding protein|Solute-binding family 1, conserved site GO:0055085 G3DSA:3.40.190.10|PF13416|PIRSF002825|PS01037|SSF53850 Alide2_3278 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735 Alide2_3279 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 Alide2_3280 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type PF12705 Alide2_3283 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009440|IPR022389 ParB-related, ThiF-related cassette, protein D|Plasmid segregation protein ParM/StbA G3DSA:3.30.420.40|PF06406|SSF53067|TIGR03739 Alide2_3285 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010998|IPR011010|IPR013762|IPR024456|IPR024457 DNA breaking-rejoining enzyme, catalytic core|Integrase catalytic domain, putative|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal|Putative integrase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF12834|PF12835|SSF56349 Alide2_3286 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001801|IPR027444|IPR037150 Histone-like protein H-NS|Histone-like protein H-NS, C-terminal domain|Histone-like protein H-NS, C-terminal domain superfamily GO:0003677|GO:0005622|GO:0006355 G3DSA:4.10.430.10|PF00816|SM00528|SSF81273 Alide2_3288 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000594|IPR022500|IPR035985 ParB-related, ThiF-related cassette, ThiF|THIF-type NAD/FAD binding fold|Ubiquitin-activating enzyme GO:0008641 G3DSA:3.40.50.720|PF00899|SSF69572|TIGR03736 Alide2_3289 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018560|IPR022499|IPR028090 Domain of unknown function DUF2016|JAB domain, prokaryotic|ParB-related, ThiF-related cassette, protein A PF09436|PF14464|SSF102712|TIGR03735 Alide2_3290 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022280|IPR032787 ParB-related, ThiF-related cassette, protein B|Prokaryotic E2 family D PF14460|TIGR03737 Alide2_3291 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022283 ParB-related, ThiF-related cassette, protein F PF14456|TIGR03742 Alide2_3292 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022289|IPR032866 ParB-related, ThiF-related cassette, protein C|Prokaryotic Ubiquitin PF14454|TIGR03738 Alide2_3293 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022273 ParB-related, ThiF-related cassette, protein E TIGR03741 Alide2_3294 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003115|IPR004437|IPR022396|IPR036086 ParB-related, ThiF-related cassette, ParB|ParB/RepB/Spo0J partition protein family|ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily GO:0003677 G3DSA:1.10.10.2830|G3DSA:3.90.1530.30|PF02195|SM00470|SSF110849|TIGR00180|TIGR03734 Alide2_3296 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000119|IPR010992 Histone-like DNA-binding protein|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|SM00411|SSF47729 Alide2_3298 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.30.40.60 Alide2_3299 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003959|IPR027417 ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase GO:0005524 PF13304|SSF52540 Alide2_3300 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR031009 Three-Cys-motif partner protein TIGR04474 Alide2_3301 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR031009 Three-Cys-motif partner protein TIGR04474 Alide2_3302 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011101 Protein of unknown function DUF5131 PF07505 Alide2_3303 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system PF08843 Alide2_3309 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014001|IPR027417|IPR029063 Helicase superfamily 1/2, ATP-binding domain|P-loop containing nucleoside triphosphate hydrolase|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|G3DSA:3.40.50.300|PR00507|SM00487|SSF52540|SSF53335 Alide2_3315 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 Alide2_3317 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system PF08843 Alide2_3318 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024654|IPR029052 Calcineurin-like phosphoesterase domain, lpxH type|Metallo-dependent phosphatase-like G3DSA:3.60.21.10|PF12850|SSF56300 Alide2_3320 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 Alide2_3321 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009553 Protein of unknown function DUF1173 PF06666 Alide2_3322 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010260 DNA-binding transcriptional activator AlpA PF05930 Alide2_3323 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014996 Integrating conjugative element protein, PFL4669 PF08900 Alide2_3328 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006171|IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal|TOPRIM domain GO:0003896|GO:0004386|GO:0008270 PF08273|PF13362|SM00778|SSF57783 Alide2_3329 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026325 Protein of unknown function DUF932 PF06067 Alide2_3330 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015927|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S24/S26A/S26B/S26C G3DSA:2.10.109.10|PF00717|SSF51306 Alide2_3332 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 PD016592|PF05280|SSF160930 Alide2_3333 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011119 Uncharacterised domain, helicase/relaxase, putative G3DSA:1.10.3210.40|PF07514 Alide2_3334 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022458|IPR027417|IPR032689 Conjugative coupling factor TraG/TraD|P-loop containing nucleoside triphosphate hydrolase|TraD/TraG, TraM recognition site G3DSA:3.40.50.300|PF12696|SSF52540|TIGR03743 Alide2_3335 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022266 Integrating conjugative element protein, PFL4697-type PF14348 Alide2_3336 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF13560|SM00530|SSF47413 Alide2_3339 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 Alide2_3341 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 PF07178|TIGR02762 Alide2_3342 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007973 Pilus assembly TraE GO:0000746 PF05309|TIGR02761 Alide2_3343 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010563 Pilus assembly TraK PF06586 Alide2_3344 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI PF03743 Alide2_3345 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009094|IPR012336|IPR017937|IPR018950|IPR036249 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily|Disulphide bond isomerase, DsbC/G, N-terminal|Thioredoxin, conserved site|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0042597|GO:0045454 G3DSA:3.10.450.70|G3DSA:3.40.30.10|PF10411|PF13098|PS00194|SSF52833|SSF54423 Alide2_3346 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014118 Type IV conjugative transfer system protein TraV PF09676 Alide2_3347 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014117|IPR025955|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:1.10.8.730|G3DSA:3.40.50.300|PF11130|SSF52540|TIGR02746 Alide2_3349 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014139|IPR019533|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S26|Peptidase S26C, conjugative transfer signal peptidase TraF GO:0000746|GO:0042597 G3DSA:2.10.109.10|PF10502|SSF51306|TIGR02771 Alide2_3351 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014114|IPR025864 Type-F conjugative transfer system protein TraW|Type-F conjugative transfer system protein TraW N-terminal domain PF12477|TIGR02743 Alide2_3352 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009649 TraU PF06834 Alide2_3353 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014113|IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC|Type-F conjugative transfer system pilin assembly protein TrbC, subgroup PF09673|TIGR02742 Alide2_3354 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN PF06986 Alide2_3356 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014111|IPR036249|IPR039555 F plasmid transfer operon protein|Thioredoxin-like superfamily|Type IV conjugative transfer system protein TraF-like G3DSA:3.40.30.10|PF13728|SSF52833|TIGR02740 Alide2_3357 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010927 Type IV conjugative transfer system protein TraH PF06122 Alide2_3358 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012931 TraG-like, N-terminal PF07916 Alide2_3360 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 Alide2_3361 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025668 Transposase DDE domain PF13586 Alide2_3362 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527 Alide2_3365 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016898|IPR022486|IPR022488|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Polyphosphate kinase 2|Polyphosphate kinase 2, PA0141|Polyphosphate kinase-2-related GO:0006793|GO:0008976 G3DSA:3.40.50.300|PF03976|PIRSF028756|SSF52540|TIGR03707 Alide2_3366 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR006121|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036163|IPR036412 HAD superfamily|HAD-like superfamily|Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872 G3DSA:2.70.150.20|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PS00154|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01512|TIGR01525 Alide2_3367 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001958|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PR01035|SSF103473 Alide2_3368 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007156|IPR023353 LemA|LemA-like domain superfamily G3DSA:1.20.1440.20|PF04011|SSF140478 Alide2_3369 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007621 TPM domain G3DSA:3.10.310.50|PF04536 Alide2_3370 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007621 TPM domain G3DSA:3.10.310.50|PF04536 Alide2_3371 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR011108|IPR022712|IPR036866 Beta-Casp domain|Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like|Zn-dependent metallo-hydrolase, RNA specificity domain G3DSA:3.40.50.10890|G3DSA:3.60.15.10|PF00753|PF07521|PF10996|SM00849|SM01027|SSF56281 Alide2_3372 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000053|IPR000312|IPR013102|IPR013466|IPR017459|IPR017872|IPR028579|IPR035902|IPR036320|IPR036566 Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase family 3, N-terminal domain superfamily|Glycosyl transferase, family 3|Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily|Putative thymidine phosphorylase|Pyrimidine nucleoside phosphorylase, C-terminal|Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily|Pyrimidine-nucleoside phosphorylase, conserved site|Thymidine phosphorylase/AMP phosphorylase|Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206|GO:0006213|GO:0016757|GO:0016763 G3DSA:1.20.970.50|G3DSA:3.40.1030.10|G3DSA:3.90.1170.30|MF_00703|PF00591|PF02885|PF07831|PIRSF000478|PS00647|SM00941|SSF47648|SSF52418|SSF54680|TIGR02645 Alide2_3373 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR005946|IPR029057|IPR029099 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like|Ribose-phosphate pyrophosphokinase|Ribose-phosphate pyrophosphokinase, N-terminal domain GO:0000287|GO:0004749|GO:0009116|GO:0009165 G3DSA:3.40.50.2020|PF00156|PF13793|SM01400|SSF53271|TIGR01251 Alide2_3374 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001478|IPR001940|IPR009003|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.120|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494 Alide2_3375 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001048|IPR036393 Acetylglutamate kinase-like superfamily|Aspartate/glutamate/uridylate kinase G3DSA:3.40.1160.10|PF00696|PR01469|SSF53633 Alide2_3377 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001100|IPR004099|IPR006121|IPR012999|IPR016156|IPR017969|IPR021179|IPR023753|IPR036163|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|FAD/NAD-linked reductase, dimerisation domain superfamily|Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|Mercury(II) reductase|Pyridine nucleotide-disulphide oxidoreductase, class I|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0009055|GO:0016152|GO:0016491|GO:0016668|GO:0030001|GO:0045340|GO:0045454|GO:0046872|GO:0050660|GO:0050661|GO:0050787|GO:0055114 G3DSA:3.30.390.30|G3DSA:3.30.70.100|G3DSA:3.50.50.60|PF00403|PF02852|PF07992|PIRSF000350|PR00945|PS00076|PS01047|SSF51905|SSF55008|SSF55424|TIGR02053 Alide2_3379 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001802|IPR006121|IPR011795|IPR017969|IPR036163 Heavy metal-associated domain superfamily|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|Mercuric transport protein periplasmic component|Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0015097|GO:0015694|GO:0030001|GO:0042597|GO:0045340|GO:0046689|GO:0046872 G3DSA:3.30.70.100|PF00403|PR00946|PS01047|SSF55008|TIGR02052 Alide2_3380 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 PF02411 Alide2_3381 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061|IPR011794|IPR015358 Hg(II)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain superfamily|Transcription regulator MerR, DNA binding GO:0003677|GO:0006355|GO:0045340|GO:0046689 G3DSA:1.10.1660.10|PF00376|PF09278|PR00040|PS00552|SM00422|SSF46955|TIGR02051 Alide2_3384 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 MF_00724|PF02049|PR01006|TIGR00205 Alide2_3387 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR004763|IPR027463 Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006812|GO:0008324|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00914 Alide2_3390 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.60|PF01527|SSF46689 Alide2_3391 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_3392 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025421 Protein of unknown function DUF4148 PF13663 Alide2_3394 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001763|IPR001845|IPR036388|IPR036390|IPR036873 HTH ArsR-type DNA-binding domain|Rhodanese-like domain|Rhodanese-like domain superfamily|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.250.10|PF00581|PF12840|PR00778|SM00418|SM00450|SSF46785|SSF52821 Alide2_3395 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13649|SSF53335 Alide2_3396 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003787|IPR027396 DsrEFH-like|Sulphur relay, DsrE/F-like protein G3DSA:3.40.1260.10|PF02635|SSF75169 Alide2_3397 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF08241|SSF53335 Alide2_3399 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 G3DSA:1.20.1600.10|PF02321|SSF56954 Alide2_3400 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_3401 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002187|IPR011322|IPR015867 Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein PII|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal GO:0006808|GO:0030234 G3DSA:3.30.70.120|PF00543|PR00340|SM00938|SSF54913 Alide2_3402 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR004763|IPR027463 Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006812|GO:0008324|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00914 Alide2_3403 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036412 HAD superfamily|HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0006812|GO:0016021|GO:0019829 G3DSA:2.70.150.20|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00702|PR00119|PS00154|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01525 Alide2_3404 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR006291|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcriptional regulatory protein PcoR, heavy metal response|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172|TIGR01387 Alide2_3405 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003660|IPR003661|IPR006290|IPR036097|IPR036890 HAMP domain|Heavy metal sensor kinase|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0000160|GO:0004673|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|SM00304|SM00387|SM00388|SSF47384|SSF55874|TIGR01386 Alide2_3406 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_3407 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025421 Protein of unknown function DUF4148 PF13663 Alide2_3408 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025421 Protein of unknown function DUF4148 PF13663 Alide2_3409 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR012337|IPR038717 Homeobox-like domain superfamily|Ribonuclease H-like superfamily|Tc1-like transposase, DDE domain GO:0003677 PF13358|PF13565|SSF46689|SSF53098 Alide2_3411 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000924|IPR001412|IPR004527|IPR008925|IPR014729|IPR020058|IPR020751|IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding|Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1|Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2|Aminoacyl-tRNA synthetase, class I, conserved site|Glutamate-tRNA ligase, bacterial/mitochondrial|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold GO:0000049|GO:0000166|GO:0004812|GO:0004818|GO:0005524|GO:0005737|GO:0006418|GO:0006424|GO:0043039 G3DSA:1.10.10.350|G3DSA:1.10.8.70|G3DSA:3.40.50.620|MF_00022|PF00749|PR00987|PS00178|SSF48163|SSF52374|TIGR00464 Alide2_3412 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000277|IPR006234|IPR015421|IPR015422|IPR015424 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|O-succinylhomoserine sulfhydrylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0030170|GO:0071268 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_02056|PF01053|PIRSF001434|SSF53383|TIGR01325 Alide2_3413 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR005854|IPR017932|IPR029055|IPR029057 Amidophosphoribosyltransferase|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0004044|GO:0009113|GO:0009116 G3DSA:3.40.50.2020|G3DSA:3.60.20.10|MF_01931|PF00156|PF13537|PIRSF000485|SSF53271|SSF56235|TIGR01134 Alide2_3414 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 PF02674 Alide2_3415 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007730|IPR036680 Sporulation-like domain|Sporulation-like domain superfamily GO:0042834 G3DSA:3.30.70.1070|PF05036|SSF110997 Alide2_3416 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001645|IPR004101|IPR013221|IPR018109|IPR036565|IPR036615 Folylpolyglutamate synthetase|Folylpolyglutamate synthetase, conserved site|Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, central|Mur-like, catalytic domain superfamily GO:0004326|GO:0005524|GO:0009058|GO:0009396|GO:0016874 G3DSA:3.40.1190.10|G3DSA:3.90.190.20|PF02875|PF08245|PIRSF001563|PS01012|SSF53244|SSF53623|TIGR01499 Alide2_3417 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006504|IPR006660|IPR036249 Arsenate reductase-like|Thioredoxin-like superfamily|Transcriptional regulator Spx/MgsR G3DSA:3.40.30.10|PF03960|SSF52833|TIGR01617 Alide2_3418 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008816 Glycine zipper 2TM domain GO:0019867 PF05433 Alide2_3419 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009664|IPR011051|IPR014710 Pyrimidine/purine nucleoside phosphorylase|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|MF_01537|PF06865|SSF51182 Alide2_3420 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001518|IPR014729|IPR018223|IPR023437|IPR024073|IPR024074 Argininosuccinate synthase|Argininosuccinate synthase, conserved site|Argininosuccinate synthase, type 2 subfamily|Argininosuccinate synthetase mutimerisation domain, C-terminal tail|Argininosuccinate synthetase, catalytic/multimerisation domain body|Rossmann-like alpha/beta/alpha sandwich fold GO:0004055|GO:0005524|GO:0006526|GO:0042803 G3DSA:1.10.287.400|G3DSA:3.40.50.620|G3DSA:3.90.1260.10|MF_00581|PF00764|PS00564|PS00565|SSF52402|SSF69864|TIGR00032 Alide2_3421 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002078|IPR002197|IPR003018|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417|IPR029016 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|GAF domain|GAF-like domain superfamily|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site GO:0003677|GO:0005515|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF01590|PF02954|PR01590|PS00675|PS00676|PS00688|SM00382|SSF46689|SSF52540 Alide2_3422 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016750 Acetophenone carboxylase beta subunit/Acetone carboxylase gamma subunit PF08882|PIRSF019217 Alide2_3423 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003692 Hydantoinase B/oxoprolinase GO:0003824 PF02538 Alide2_3424 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002821|IPR008040 Hydantoinase A/oxoprolinase|Hydantoinaseoxoprolinase, N-terminal GO:0016787 PF01968|PF05378|SSF53067 Alide2_3425 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014729|IPR018317 Queuosine biosynthesis protein QueC|Rossmann-like alpha/beta/alpha sandwich fold G3DSA:3.40.50.620|MF_01633|PF06508|PIRSF006293|SSF52402|TIGR00364 Alide2_3426 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003744 Queuosine precursor transporter GO:1990397 MF_02088|PF02592|TIGR00697 Alide2_3427 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005530 SPW repeat PF03779 Alide2_3428 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003170|IPR006094|IPR011601|IPR016167|IPR016169|IPR036318|IPR036635 FAD linked oxidase, N-terminal|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|UDP-N-acetylenolpyruvoylglucosamine reductase|UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal|UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.90.78.10|MF_00037|PF01565|PF02873|SSF56176|SSF56194|TIGR00179 Alide2_3429 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007551|IPR035570|IPR035571|IPR036183 Protein of unknown function DUF520|UPF0234, N-terminal|UPF0234-like, C-terminal|YajQ-like superfamily G3DSA:3.30.70.860|G3DSA:3.30.70.990|MF_00632|PF04461|SSF89963 Alide2_3430 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011969|IPR021109 Aspartic peptidase domain superfamily|Clan AA aspartic peptidase, C-terminal G3DSA:2.40.70.10|PF13975|SSF50630|TIGR02281 Alide2_3431 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.3210.10|SSF109604 Alide2_3432 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 MF_01043|PF02660|SM01207|TIGR00023 Alide2_3433 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004369|IPR007214|IPR036754 Prolyl-tRNA editing protein, YbaK/EbsC|YbaK/aminoacyl-tRNA synthetase-associated domain|YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 G3DSA:3.90.960.10|PF04073|PIRSF006181|SSF55826|TIGR00011 Alide2_3434 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023210|IPR036812 NADP-dependent oxidoreductase domain|NADP-dependent oxidoreductase domain superfamily G3DSA:3.20.20.100|PF00248|SSF51430 Alide2_3435 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:2.40.50.140|G3DSA:2.40.50.940|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 Alide2_3436 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_3437 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.40.190.10|PF13343|SSF53850 Alide2_3438 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR000639|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like GO:0003824 G3DSA:3.40.50.1820|PF00561|PR00111|PR00412|SSF53474 Alide2_3439 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010190|IPR032094|IPR036291 Diaminopimelate dehydrogenase, Ddh|Meso-diaminopimelate D-dehydrogenase, C-terminal|NAD(P)-binding domain superfamily GO:0009089|GO:0047850 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF16654|PIRSF025648|SSF51735|SSF55347|TIGR01921 Alide2_3441 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012779|IPR014782|IPR024601|IPR027268|IPR035414|IPR037144|IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily|Peptidase M1, alanyl aminopeptidase|Peptidase M1, alanyl aminopeptidase, C-terminal|Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily|Peptidase M1, alanyl aminopeptidase, Ig-like fold|Peptidase M1, membrane alanine aminopeptidase, N-terminal|Peptidase M4/M1, CTD superfamily GO:0008237|GO:0008270 G3DSA:1.10.1740.60|G3DSA:1.10.390.10|G3DSA:1.25.50.10|G3DSA:2.60.40.1730|G3DSA:2.60.40.1840|PF01433|PF11940|PF17432|PR00756|SSF55486|SSF63737|TIGR02414 Alide2_3442 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000146|IPR028343|IPR033391 Fructose-1,6-bisphosphatase|Fructose-1,6-bisphosphatase class 1|Fructose-1-6-bisphosphatase class I, N-terminal GO:0005975|GO:0016791|GO:0042132 G3DSA:3.30.540.10|G3DSA:3.40.190.80|MF_01855|PF00316|PIRSF000904|PIRSF500210|PR00115|SSF56655 Alide2_3443 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013610|IPR017113 Antirestriction, ArdC|Domain of unknown function DUF1738 PF08401|PIRSF037112 Alide2_3445 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF01381|SM00530|SSF47413 Alide2_3448 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005335|IPR038713 Terminase small subunit|Terminase small subunit, N-terminal domain superfamily GO:0006323 G3DSA:1.10.10.1400|PF03592 Alide2_3449 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014820|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Primase, C-terminal 1 G3DSA:3.40.50.300|PF08708|PF13481|SM00942|SSF52540 Alide2_3450 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR039459 RepB-like DNA primase domain G3DSA:3.30.70.1790|PF16793 Alide2_3452 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009061 Putative DNA-binding domain superfamily PF12728|SSF46955 Alide2_3454 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR010998|IPR011010|IPR013762|IPR025166|IPR038488 DNA breaking-rejoining enzyme, catalytic core|Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|G3DSA:3.30.160.390|PF00589|PF13356|SSF56349 Alide2_3455 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001537|IPR029026|IPR029028|IPR029064 50S ribosomal protein L30e-like|Alpha/beta knot methyltransferases|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 G3DSA:3.30.1330.30|G3DSA:3.40.1280.10|PF00588|SSF55315|SSF75217 Alide2_3456 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012337|IPR022898|IPR024567|IPR036397 Ribonuclease H superfamily|Ribonuclease H-like superfamily|Ribonuclease HII|Ribonuclease HII/HIII domain GO:0003676|GO:0004523 G3DSA:3.30.420.10|MF_00052_B|PF01351|SSF53098 Alide2_3457 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 MF_00392|PF02684|SSF53756|TIGR00215 Alide2_3458 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001451|IPR010137|IPR011004|IPR029098|IPR037157 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase|Hexapeptide repeat|Trimeric LpxA-like superfamily|UDP N-acetylglucosamine O-acyltransferase, C-terminal|UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily GO:0008610|GO:0008780 G3DSA:1.20.1180.10|G3DSA:2.160.10.10|MF_00387|PF00132|PF13720|PIRSF000456|SSF51161|TIGR01852 Alide2_3459 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010084|IPR013114|IPR029069 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ|Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ|HotDog domain superfamily GO:0005737|GO:0006633|GO:0016836 G3DSA:3.10.129.10|MF_00406|PF07977|SSF54637|TIGR01750 Alide2_3460 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001451|IPR007691|IPR011004|IPR020573 Hexapeptide repeat|Trimeric LpxA-like superfamily|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016410|GO:0016747 G3DSA:2.160.10.10|G3DSA:3.40.1390.10|MF_00523|PF00132|PF04613|PF14602|SSF51161|TIGR01853 Alide2_3461 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005632|IPR024930 Chaperone protein Skp|Skp domain superfamily GO:0051082 G3DSA:3.30.910.20|PF03938|PIRSF002094|SM00935|SSF111384 Alide2_3462 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000184|IPR010827|IPR023707 Bacterial surface antigen (D15)|Outer membrane protein assembly factor BamA|POTRA domain, BamA/TamA-like GO:0019867|GO:0071709 G3DSA:2.40.160.50|G3DSA:3.10.20.310|MF_01430|PF01103|PF07244|PIRSF006076|TIGR03303 Alide2_3463 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001478|IPR004387|IPR008915|IPR036034 PDZ domain|PDZ superfamily|Peptidase M50|Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0005515|GO:0006508|GO:0016021 G3DSA:2.30.42.10|PF02163|SM00228|SSF50156|TIGR00054 Alide2_3464 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003821|IPR013512|IPR013644|IPR026877|IPR036169|IPR036291 1-deoxy-D-xylulose 5-phosphate reductoisomerase|1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal|1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal|DXP reductoisomerase C-terminal domain|DXP reductoisomerase, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0005515|GO:0008299|GO:0030604|GO:0046872|GO:0055114|GO:0070402 G3DSA:1.10.1740.10|G3DSA:3.40.50.720|MF_00183|PF02670|PF08436|PF13288|PIRSF006205|SSF51735|SSF55347|SSF69055|TIGR00243 Alide2_3465 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 PF01148|PS01315 Alide2_3466 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001441|IPR018520|IPR036424 Decaprenyl diphosphate synthase-like|Decaprenyl diphosphate synthase-like superfamily|Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 G3DSA:3.40.1180.10|MF_01139|PF01255|PS01066|SSF64005|TIGR00055 Alide2_3467 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002661|IPR023584|IPR036191 RRF superfamily|Ribosome recycling factor|Ribosome recycling factor domain GO:0006412 G3DSA:1.10.132.20|G3DSA:3.30.1360.40|MF_00040|PF01765|SSF55194|TIGR00496 Alide2_3468 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001048|IPR011817|IPR015963|IPR036393 Acetylglutamate kinase-like superfamily|Aspartate/glutamate/uridylate kinase|Uridylate kinase|Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0009041|GO:0033862 G3DSA:3.40.1160.10|MF_01220_B|PF00696|PIRSF005650|SSF53633|TIGR02075 Alide2_3469 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001816|IPR009060|IPR014039|IPR018101|IPR036402 Elongation factor Ts, dimerisation domain superfamily|Translation elongation factor EFTs/EF1B|Translation elongation factor EFTs/EF1B, dimerisation|Translation elongation factor Ts, conserved site|UBA-like superfamily GO:0003746|GO:0005515|GO:0005622|GO:0006414 G3DSA:1.10.286.20|G3DSA:1.10.8.10|G3DSA:3.30.479.20|MF_00050|PF00889|PS01127|SSF46934|SSF54713|TIGR00116 Alide2_3470 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001865|IPR005706|IPR018130|IPR023591 Ribosomal protein S2|Ribosomal protein S2, bacteria/mitochondria/plastid|Ribosomal protein S2, conserved site|Ribosomal protein S2, flavodoxin-like domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935 G3DSA:1.10.287.610|G3DSA:3.40.50.10490|MF_00291_B|PF00318|PR00395|PS00962|SSF52313|TIGR01011 Alide2_3471 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020556|IPR023631|IPR036928 Amidase signature (AS) superfamily|Amidase signature domain|Amidase, conserved site G3DSA:3.90.1300.10|PF01425|PS00571|SSF75304 Alide2_3472 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905 Alide2_3474 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF13714|SSF51621 Alide2_3476 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003399 Mce/MlaD PF02470 Alide2_3477 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR030802 ABC transporter permease MalE GO:0043190 PF02405 Alide2_3478 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF13411|PR00040|SM00422|SSF46955 Alide2_3479 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR027256|IPR036412 HAD superfamily|HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0006812|GO:0016021|GO:0019829 G3DSA:2.70.150.20|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00702|PR00119|PR00941|PS00154|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01512|TIGR01525 Alide2_3480 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003740 Uncharacterised membrane protein YitT PF02588 Alide2_3482 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000923|IPR008972|IPR033138 Blue (type 1) copper domain|Cupredoxin|Multicopper oxidases, conserved site GO:0005507|GO:0009055 G3DSA:2.60.40.420|PF00127|PS00079|SSF49503 Alide2_3483 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007332 Protein of unknown function DUF411 PF04214 Alide2_3484 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005321|IPR016117 ArgJ-like domain superfamily|Peptidase S58, DmpA G3DSA:3.60.70.12|PF03576|SSF56266 Alide2_3485 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011852 TRAP transporter solute receptor, TAXI family G3DSA:3.40.190.10|PF16868|SSF53850 Alide2_3486 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR022374|IPR027417|IPR032781 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|Energy-dependent translational throttle protein EttA|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0045900 G3DSA:3.40.50.300|PF00005|PF12848|PS00211|SM00382|SSF52540|TIGR03719 Alide2_3487 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000629|IPR001650|IPR011545|IPR014001|IPR027417|IPR028622 ATP-dependent RNA helicase DEAD-box, conserved site|ATP-dependent RNA helicase RhlE|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0004004|GO:0005524|GO:0042255 G3DSA:3.40.50.300|MF_00968|PF00270|PF00271|PS00039|SM00487|SM00490|SSF52540 Alide2_3488 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 G3DSA:3.40.630.10|PF00246|SM00631|SSF53187 Alide2_3489 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013424 PEP-CTERM protein-sorting domain PF07589|TIGR02595 Alide2_3494 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007300 CidB/LrgB family PF04172 Alide2_3495 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3496 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|SSF47203|SSF56645 Alide2_3497 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_3498 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3500 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025392 Domain of unknown function DUF4124 PF13511 Alide2_3501 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|PF01370|SSF51735 Alide2_3502 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001041|IPR001221|IPR001433|IPR001709|IPR006058|IPR008333|IPR012675|IPR017938|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00371|PR00410|PS00197|SSF52343|SSF54292|SSF63380 Alide2_3503 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001926|IPR036052 Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme G3DSA:3.40.50.1100|PF00291|SSF53686 Alide2_3504 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_3505 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000257|IPR038071 UROD/MetE-like superfamily|Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 G3DSA:3.20.20.210|PF01208|SSF51726 Alide2_3506 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3507 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3508 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006879|IPR011330 Carbohydrate deacetylase YdjC-like|Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 G3DSA:3.20.20.370|PF04794|SSF88713 Alide2_3509 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007267 GtrA-like protein GO:0000271|GO:0016021 PF04138 Alide2_3510 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR038731 Glycosyltransferase RgtA/B/C/D-like PF13231 Alide2_3511 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001173|IPR029044 Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF00535|SSF53448 Alide2_3512 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000550|IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily|7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 G3DSA:3.30.70.560|PF01288|PS00794|SSF55083|TIGR01498 Alide2_3513 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002646|IPR010206|IPR025866|IPR032828 Poly A polymerase, head domain|Poly(A) polymerase I|Polymerase A arginine-rich C-terminal domain|tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain GO:0003723|GO:0004652|GO:0006378|GO:0006396|GO:0016779 G3DSA:1.10.3090.10|G3DSA:3.30.460.10|MF_00957|PF01743|PF12626|PF12627|SSF81301|SSF81891|TIGR01942 Alide2_3514 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006385|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|HAD-superfamily hydrolase, subfamily IB, SerB1-like G3DSA:1.20.1440.100|G3DSA:3.40.50.1000|PF12710|SSF56784|TIGR01488|TIGR01490 Alide2_3515 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013317|IPR017788|IPR027417 Chromosomal replication initiator protein DnaA|DnaA regulatory inactivator Hda|P-loop containing nucleoside triphosphate hydrolase GO:0032297 G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00308|SSF52540|TIGR03420 Alide2_3516 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029055 Nucleophile aminohydrolases, N-terminal G3DSA:1.10.246.130|G3DSA:3.60.20.40|PF01019|PR01210|SSF56235 Alide2_3517 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004733|IPR010918|IPR016188|IPR036676|IPR036921 Phosphoribosylformylglycinamidine cyclo-ligase|PurM-like, C-terminal domain|PurM-like, C-terminal domain superfamily|PurM-like, N-terminal domain|PurM-like, N-terminal domain superfamily GO:0004641|GO:0005737|GO:0006189 G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_00741|PF00586|PF02769|SSF55326|SSF56042|TIGR00878 Alide2_3518 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002549 Transmembrane protein TqsA-like PF01594 Alide2_3519 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:3.40.50.620|PF00582|PR01438|SSF52402 Alide2_3520 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032698 Protein SirB1, N-terminal PF13369|PF13371 Alide2_3521 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004268 Peptidoglycan biosynthesis protein MurJ MF_02078|PF03023|PIRSF002869|PR01806|TIGR01695 Alide2_3522 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002583|IPR036510 Ribosomal protein S20|Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.20.58.110|MF_00500|PD004231|PF01649|SSF46992|TIGR00029 Alide2_3523 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002725 Protein of unknown function DUF45 G3DSA:3.30.2010.10|PF01863 Alide2_3525 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004291|IPR024463|IPR024474|IPR039552 Transposase IS66, C-terminal|Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66 PF03050|PF13005|PF13007|PF13817 Alide2_3526 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008878 Transposase IS66, Orf2 PF05717 Alide2_3527 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR010921 Transposase IS3/IS911family|Trp repressor/replication initiator GO:0003677|GO:0004803|GO:0006313|GO:0043565 PF01527|SSF48295 Alide2_3528 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_3529 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_3531 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023614 Porin domain superfamily G3DSA:2.40.160.10|PF13609|SSF56935 Alide2_3532 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_3533 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_3537 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005493|IPR036704 Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.100|PF03737|SSF89562 Alide2_3538 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021969 Protein of unknown function DUF3579 G3DSA:3.30.70.2340|PF12112 Alide2_3539 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004636|IPR005814|IPR015421|IPR015422|IPR015424 Acetylornithine/Succinylornithine transaminase family|Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0006525|GO:0008483|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01107|PF00202|PIRSF000521|PS00600|SSF53383|TIGR00707 Alide2_3540 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002292|IPR006130|IPR006131|IPR006132|IPR024904|IPR036901 Aspartate/ornithine carbamoyltransferase|Aspartate/ornithine carbamoyltransferase superfamily|Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain|Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding|Ornithine carbamoyltransferase|Ornithine/putrescine carbamoyltransferase GO:0004585|GO:0006520|GO:0006591|GO:0016597|GO:0016743 G3DSA:3.40.50.1370|MF_01109|PF00185|PF02729|PR00100|PR00102|PS00097|SSF53671|TIGR00658 Alide2_3541 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007438|IPR014519 Protein of unknown function DUF488|Uncharacterised conserved protein UCP024492 PF04343|PIRSF024492 Alide2_3542 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021331 Protein of unknown function DUF2945 PF11160 Alide2_3543 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005358 Putative zinc- or iron-chelating domain containing protein PF03692 Alide2_3545 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003373|IPR006073|IPR011640|IPR011642|IPR027417|IPR030389 FeoB-type guanine nucleotide-binding (G) domain|Ferrous iron transport protein B|Ferrous iron transport protein B, C-terminal|GTP binding domain|Nucleoside transporter/FeoB GTPase, Gate domain|P-loop containing nucleoside triphosphate hydrolase GO:0005525|GO:0015093|GO:0015684|GO:0016021 G3DSA:3.40.50.300|PF02421|PF07664|PF07670|PR00326|SSF52540|TIGR00437 Alide2_3546 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007167|IPR008988|IPR038157 Ferrous iron transporter FeoA domain|Ferrous iron transporter, core domain|Transcriptional repressor, C-terminal GO:0046914 G3DSA:2.30.30.90|PF04023|SM00899|SSF50037 Alide2_3547 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005358 Putative zinc- or iron-chelating domain containing protein PF03692 Alide2_3548 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007325|IPR017484|IPR037175 Kynurenine formamidase superfamily|Kynurenine formamidase, bacteria|Kynurenine formamidase/cyclase-like GO:0004061|GO:0004328|GO:0019441 G3DSA:3.50.30.50|MF_01969|PF04199|SSF102198|TIGR03035 Alide2_3549 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3550 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_3551 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR025966|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Oligopeptide transport permease C-like, N-terminal domain GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 Alide2_3552 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 Alide2_3553 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 Alide2_3554 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000914|IPR023765|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain|Solute-binding protein family 5, conserved site GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|PS01040|SSF53850 Alide2_3555 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006862|IPR014940|IPR016662|IPR029058 Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase|Acyl-CoA thioesterase, long chain|Alpha/Beta hydrolase fold|BAAT/Acyl-CoA thioester hydrolase C-terminal GO:0006637|GO:0016790 G3DSA:2.60.40.2240|G3DSA:3.40.50.1820|PF04775|PF08840|PIRSF016521|SSF53474 Alide2_3556 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001365|IPR006330|IPR028892|IPR032466 Adenine deaminase type 2|Adenosine/AMP deaminase domain|Adenosine/adenine deaminase|Metal-dependent hydrolase GO:0000034|GO:0006146|GO:0019239 G3DSA:3.20.20.140|MF_01962|PF00962|SSF51556|TIGR01430 Alide2_3557 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008579|IPR011051|IPR014710 Domain of unknown function DUF861, cupin-3|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF05899|SSF51182 Alide2_3558 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_3559 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 Alide2_3560 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR010065|IPR014341|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|Ectoine/hydroxyectoine ABC transporter, permease protein EhuD|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726|TIGR03003 Alide2_3561 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 Alide2_3562 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905 Alide2_3563 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 G3DSA:3.40.50.2300|PF02608 Alide2_3564 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 G3DSA:3.40.50.2300|PF02608 Alide2_3565 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3566 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3567 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_3569 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR038717 Homeobox-like domain superfamily|Tc1-like transposase, DDE domain GO:0003677 PF13358|PF13565|SSF46689 Alide2_3571 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF13545|SM00419|SSF46785|SSF51206 Alide2_3572 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023614 Porin domain superfamily G3DSA:2.40.160.10|PF13609|SSF56935 Alide2_3573 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001310|IPR019808|IPR036265 HIT-like superfamily|Histidine triad (HIT) protein|Histidine triad, conserved site G3DSA:3.30.428.10|PF01230|PR00332|PS00892|SSF54197 Alide2_3574 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006139|IPR006140|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain superfamily GO:0016616|GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF00389|PF02826|SSF51735|SSF52283 Alide2_3575 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473 Alide2_3576 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018022|IPR027417 IPP transferase|P-loop containing nucleoside triphosphate hydrolase GO:0008033 G3DSA:1.10.20.140|G3DSA:3.40.50.300|MF_00185|PF01715|SSF52540|TIGR00174 Alide2_3577 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_3578 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002068|IPR008978 Alpha crystallin/Hsp20 domain|HSP20-like chaperone G3DSA:2.60.40.790|PF00011|SSF49764 Alide2_3579 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003838 ABC transporter permease protein domain GO:0016020 PF02687 Alide2_3580 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001926|IPR036052 Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme G3DSA:3.40.50.1100|PF00291|SSF53686 Alide2_3581 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010791|IPR023374 AttH domain|AttH-like domain superfamily G3DSA:2.40.370.10|PF07143|PF17186|SSF159245 Alide2_3582 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3583 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3584 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_3585 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_3586 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_3587 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_3588 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005116|IPR008995|IPR016462|IPR036388|IPR036390 Molybdate-dependent transcriptional regulator ModE|Molybdate/tungstate binding, C-terminal|Transcription regulator HTH, LysR|Transport-associated OB, type 1|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355|GO:0015689|GO:0030151 G3DSA:1.10.10.10|G3DSA:2.40.50.100|PF00126|PF03459|PIRSF005763|SSF46785|SSF50331 Alide2_3589 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 G3DSA:3.40.190.10|PF13531|PIRSF004846|SSF53850|TIGR01256 Alide2_3590 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR011867|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016020|GO:0016021|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR02141 Alide2_3591 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR005116|IPR008995|IPR011868|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate ABC transporter, ATP-binding protein|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 1 GO:0005524|GO:0015098|GO:0015689|GO:0016020|GO:0016887 G3DSA:2.40.50.100|G3DSA:3.40.50.300|PF00005|PF03459|PS00211|SM00382|SSF50331|SSF52540|TIGR02142 Alide2_3593 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024370 PBP domain G3DSA:3.40.190.10|PF12849|SSF53850 Alide2_3594 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_3595 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_3596 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR024370|IPR036388|IPR036390 PBP domain|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF12727|SSF46785|SSF53850 Alide2_3597 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001736|IPR025202 Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824 G3DSA:3.30.870.10|PF13091|SM00155|SSF56024 Alide2_3598 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_3599 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002694|IPR006171|IPR006295|IPR013264|IPR019475|IPR030846|IPR036977|IPR037068 DNA Primase, CHC2-type zinc finger|DNA primase DnaG, bacteria|DNA primase, DnaB-helicase binding domain|DNA primase, DnaG|DNA primase, catalytic core, N-terminal|DNA primase, catalytic core, N-terminal domain superfamily|TOPRIM domain|Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0006269|GO:0008270|GO:0016779 G3DSA:1.20.50.20|G3DSA:3.40.1360.10|G3DSA:3.90.580.10|G3DSA:3.90.980.10|MF_00974|PF01807|PF08275|PF10410|PF13662|SM00400|SM00493|SSF56731|SSF57783|TIGR01391 Alide2_3600 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000943|IPR007127|IPR007624|IPR007627|IPR007630|IPR007631|IPR009042|IPR012760|IPR013324|IPR013325|IPR014284|IPR028630|IPR036388 RNA polymerase sigma factor 70, non-essential domain|RNA polymerase sigma factor 70, region 1.1|RNA polymerase sigma factor RpoD|RNA polymerase sigma factor RpoD, C-terminal|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.220.120|G3DSA:1.10.601.10|MF_00963|PF00140|PF03979|PF04539|PF04542|PF04545|PF04546|PR00046|PS00715|PS00716|SSF88659|SSF88946|TIGR02393|TIGR02937 Alide2_3602 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005019|IPR011257 DNA glycosylase|Methyladenine glycosylase GO:0003824|GO:0006281|GO:0006284|GO:0008725 G3DSA:1.10.340.30|PF03352|SSF48150 Alide2_3603 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003710|IPR008927|IPR013328|IPR013332|IPR013752|IPR036291 6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|Ketopantoate reductase ApbA/PanE|Ketopantoate reductase, C-terminal domain|Ketopantoate reductase, N-terminal domain|NAD(P)-binding domain superfamily GO:0005737|GO:0008677|GO:0015940|GO:0016491|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF02558|PF08546|SSF48179|SSF51735|TIGR00745 Alide2_3604 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3605 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_3606 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000891|IPR002034|IPR013785 Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase GO:0003824|GO:0019752|GO:0046912 G3DSA:3.20.20.70|PF00682|PS00815|SSF51569 Alide2_3607 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_3608 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002577|IPR036388|IPR036390 Helix-turn-helix, HxlR type|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF01638|SSF46785 Alide2_3609 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain G3DSA:3.10.50.40|PF00254|SSF54534 Alide2_3610 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005839|IPR005840|IPR006638|IPR007197|IPR013848|IPR020612|IPR023404|IPR038135 Elp3/MiaB/NifB|Methylthiotransferase|Methylthiotransferase, N-terminal|Methylthiotransferase, N-terminal domain superfamily|Methylthiotransferase, conserved site|Radical SAM|Radical SAM, alpha/beta horseshoe|Ribosomal protein S12 methylthiotransferase RimO GO:0003824|GO:0005737|GO:0006400|GO:0016740|GO:0018339|GO:0051536|GO:0051539 G3DSA:2.40.50.140|G3DSA:3.40.50.12160|G3DSA:3.80.30.20|MF_01865|PF00919|PF04055|PS01278|SM00729|SSF102114|TIGR00089|TIGR01125 Alide2_3611 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007897|IPR010134|IPR012909 PHA accumulation regulator DNA-binding, N-terminal|PHB accumulation regulatory|Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 PF05233|PF07879|TIGR01848 Alide2_3612 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000504|IPR012677|IPR035979 Nucleotide-binding alpha-beta plait domain superfamily|RNA recognition motif domain|RNA-binding domain superfamily GO:0003676 G3DSA:3.30.70.330|PF00076|SM00360|SSF54928 Alide2_3614 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002912|IPR003607|IPR004095|IPR004811|IPR007685|IPR012675|IPR012676 ACT domain|Beta-grasp domain superfamily|HD/PDEase domain|RelA/SpoT|RelA/SpoT family|TGS|TGS-like GO:0015969 G3DSA:1.10.3210.10|G3DSA:3.10.20.30|G3DSA:3.30.460.10|G3DSA:3.30.70.260|PF02824|PF04607|PF13291|PF13328|SM00954|SSF109604|SSF55021|SSF81271|SSF81301|TIGR00691 Alide2_3615 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1 G3DSA:3.40.50.1820|PF12697|SSF53474 Alide2_3616 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR011294|IPR020904|IPR036291 3-hydroxybutyrate dehydrogenase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0003858|GO:0016491|GO:0055114 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735|TIGR01963 Alide2_3617 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007497 Protein of unknown function DUF541 G3DSA:3.30.110.170|G3DSA:3.30.70.2970|PF04402 Alide2_3618 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR016032|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF46894|SSF52172 Alide2_3619 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003660|IPR003661|IPR004358|IPR032408|IPR036097|IPR036890|IPR038421 HAMP domain|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Sensor histidine kinase RisS, periplasmic domain|Sensor histidine kinase RisS, periplasmic domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016021|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.300|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PF16524|PR00344|SM00304|SM00387|SM00388|SSF47384|SSF55874 Alide2_3620 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003526|IPR020555|IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase|2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily|2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685|GO:0016114 G3DSA:3.30.1330.50|MF_00107|PF02542|PS01350|SSF69765|TIGR00151 Alide2_3621 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001228|IPR018294|IPR029044|IPR034683 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site|Cytidylyltransferase IspD/TarI|Nucleotide-diphospho-sugar transferases GO:0003824|GO:0008299|GO:0050518|GO:0070567 G3DSA:3.90.550.10|MF_00108|PF01128|PS01295|SSF53448|TIGR00453 Alide2_3622 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001650|IPR003711|IPR004576|IPR005118|IPR011545|IPR014001|IPR027417|IPR036101|IPR037235 CarD-like/TRCF domain|CarD-like/TRCF domain superfamily|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|TRCF-like, C-terminal domain|Transcription-repair coupling factor|Transcription-repair-coupling factor, C-terminal domain GO:0003676|GO:0003684|GO:0005524|GO:0006281 G3DSA:2.30.30.840|G3DSA:3.30.2060.10|G3DSA:3.40.50.11140|G3DSA:3.40.50.11180|G3DSA:3.40.50.300|G3DSA:3.90.1150.50|MF_00969|PF00270|PF00271|PF02559|PF03461|SM00487|SM00490|SM00982|SM01058|SSF141259|SSF143517|SSF52540|TIGR00580 Alide2_3624 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006439|IPR008927|IPR013118|IPR013328|IPR023198|IPR023214|IPR036412 6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Mannitol dehydrogenase, C-terminal|Phosphoglycolate phosphatase-like, domain 2 GO:0016491|GO:0016787|GO:0050662|GO:0055114 G3DSA:1.10.1040.10|G3DSA:1.10.150.240|G3DSA:3.40.50.1000|G3DSA:3.40.50.720|PF08125|PF13419|PR00413|SSF48179|SSF56784|TIGR01509 Alide2_3625 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023214|IPR036412 HAD superfamily|HAD-like superfamily G3DSA:3.40.50.1000|PF12710|SSF56784|TIGR00338|TIGR01488 Alide2_3626 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR007492|IPR011006 CheY-like superfamily|LytTR DNA-binding domain|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677 G3DSA:2.40.50.40|G3DSA:3.40.50.2300|PF00072|PF04397|SM00448|SM00850|SSF52172 Alide2_3627 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 PF02535 Alide2_3628 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002925|IPR029058 Alpha/Beta hydrolase fold|Dienelactone hydrolase GO:0016787 G3DSA:3.40.50.1820|PF01738|SSF53474 Alide2_3629 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_3630 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_3631 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3632 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3633 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR029032 AhpD-like|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118 Alide2_3634 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3635 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 Alide2_3636 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3637 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001098|IPR002298|IPR002421|IPR002562|IPR008918|IPR012337|IPR018320|IPR019760|IPR020045|IPR020046|IPR029060|IPR036279|IPR036397 3'-5' exonuclease domain|5'-3' exonuclease, C-terminal domain superfamily|5'-3' exonuclease, N-terminal|5'-3' exonuclease, alpha-helical arch, N-terminal|DNA polymerase 1|DNA polymerase A|DNA polymerase I-like, H3TH domain|DNA-directed DNA polymerase, family A, conserved site|DNA-directed DNA polymerase, family A, palm domain|Helix-hairpin-helix motif, class 2|PIN-like domain superfamily|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0003677|GO:0003824|GO:0003887|GO:0006139|GO:0006260|GO:0006261|GO:0008408 G3DSA:1.10.150.20|G3DSA:1.20.1060.10|G3DSA:3.30.420.10|G3DSA:3.30.70.370|G3DSA:3.40.50.1010|PF00476|PF01367|PF01612|PF02739|PR00868|PS00447|SM00279|SM00474|SM00475|SM00482|SSF47807|SSF53098|SSF56672|SSF88723|TIGR00593 Alide2_3640 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002575|IPR005280|IPR011009 Aminoglycoside phosphotransferase|Homoserine kinase, type II|Protein kinase-like domain superfamily GO:0004413|GO:0009088 G3DSA:3.30.200.20|G3DSA:3.90.1200.10|MF_00301|PF01636|SSF56112|TIGR00938 Alide2_3642 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR001638|IPR029787 GGDEF domain|Nucleotide cyclase|Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.30.70.270|G3DSA:3.40.190.10|PF00497|PF00990|SM00062|SM00267|SSF53850|SSF55073|TIGR00254 Alide2_3643 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008557 Protein of unknown function DUF839 PF05787 Alide2_3644 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013986|IPR014017|IPR027417|IPR034739 DExx box DNA helicase domain superfamily|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0005524|GO:0016787 G3DSA:1.10.10.160|G3DSA:1.10.486.10|G3DSA:3.40.50.300|PF00580|PF13361|SSF52540 Alide2_3645 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001093|IPR005994|IPR013785|IPR015875 Aldolase-type TIM barrel|Guanosine monophosphate reductase, type2|IMP dehydrogenase / GMP reductase, conserved site|IMP dehydrogenase/GMP reductase GO:0003824|GO:0003920|GO:0006163|GO:0016491|GO:0055114|GO:1902560 G3DSA:3.20.20.70|MF_01511|PF00478|PIRSF036500|PS00487|SM01240|SSF51412|TIGR01306 Alide2_3646 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018676 Protein of unknown function DUF2149 PF09919 Alide2_3647 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002898 MotA/TolQ/ExbB proton channel PF01618 Alide2_3649 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003672 CobN/magnesium chelatase GO:0009058 PF02514 Alide2_3650 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000531|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935 Alide2_3651 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010266 NnrS PF05940 Alide2_3652 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_3653 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_3654 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003773|IPR027024 ABC-type uncharacterised transport system, substrate-binding component, TM0202 type|Menaquinone biosynthesis enzyme G3DSA:3.40.190.10|PF02621|PIRSF027386|SSF53850 Alide2_3655 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000531|IPR010917|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, conserved site|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PS01156|SSF56935 Alide2_3656 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SM00419|SSF46785|SSF51206 Alide2_3658 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007410|IPR036182 Copper chaperone PCuAC|Copper chaperone PCuAC superfamily G3DSA:2.60.40.1890|PF04314|SSF110087 Alide2_3659 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004812|IPR011701|IPR036259 Drug resistance transporter Bcr/CmlA subfamily|MFS transporter superfamily|Major facilitator superfamily GO:0006855|GO:0015238|GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473|TIGR00710 Alide2_3661 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005545|IPR011008 Dimeric alpha-beta barrel|YCII-related G3DSA:3.30.70.1060|PF03795|SSF54909 Alide2_3662 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3663 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004165|IPR012792|IPR037171 3-oxoacid CoA-transferase, subunit A|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|SM00882|SSF100950|TIGR02429 Alide2_3664 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004164|IPR004165|IPR012791|IPR037171 3-oxoacid CoA-transferase, subunit B|Coenzyme A transferase active site|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|PS01274|SM00882|SSF100950|TIGR02428 Alide2_3665 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003464|IPR011008|IPR026029 Dimeric alpha-beta barrel|Muconolactone delta-isomerase|Muconolactone isomerase domain GO:0006725 G3DSA:3.30.70.1060|PD006619|PF02426|PIRSF001486|SSF54909|TIGR03221 Alide2_3666 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR036866 Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like G3DSA:3.60.15.10|PF00753|SM00849|SSF56281 Alide2_3667 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_3669 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR029787|IPR035965 GGDEF domain|Nucleotide cyclase|PAS domain|PAS domain superfamily G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF13188|SM00267|SSF55073|SSF55785|TIGR00254 Alide2_3670 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000629|IPR001650|IPR011545|IPR014001|IPR027417 ATP-dependent RNA helicase DEAD-box, conserved site|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003676|GO:0005524 G3DSA:3.40.50.300|PF00270|PF00271|PS00039|SM00487|SM00490|SSF52540 Alide2_3671 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_3672 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012337|IPR013520|IPR022894|IPR036397 Exonuclease, RNase T/DNA polymerase III|Oligoribonuclease|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0000175|GO:0003676 G3DSA:3.30.420.10|MF_00045|PF00929|SM00479|SSF53098 Alide2_3673 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001915|IPR032456 CAAX prenyl protease 1, N-terminal|Peptidase M48 GO:0004222|GO:0006508 G3DSA:3.30.2010.10|PF01435|PF16491 Alide2_3674 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001533|IPR036428 Pterin 4 alpha carbinolamine dehydratase|Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 G3DSA:3.30.1360.20|MF_00434|PF01329|SSF55248 Alide2_3675 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004881|IPR010914|IPR012340|IPR027417 Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|Ribosome biogenesis GTPase RsgA|RsgA GTPase domain GO:0003924|GO:0005525 G3DSA:1.10.40.50|G3DSA:2.40.50.140|G3DSA:3.40.50.300|MF_01820|PF03193|SSF50249|SSF52540|TIGR00157 Alide2_3676 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002645|IPR011547|IPR036513 SLC26A/SulP transporter domain|STAS domain|STAS domain superfamily GO:0008272|GO:0015116|GO:0016021 G3DSA:3.30.750.24|PF00916|PF01740|SSF52091 Alide2_3677 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001917|IPR004839|IPR005861|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Aminotransferase, class-II, pyridoxal-phosphate binding site|Histidinol-phosphate aminotransferase family|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0000105|GO:0003824|GO:0004400|GO:0009058|GO:0016740|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01023|PF00155|PS00599|SSF53383|TIGR01141 Alide2_3678 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 MF_00024|PF03186 Alide2_3679 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000086|IPR015797 NUDIX hydrolase domain|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|PF00293|SSF55811 Alide2_3680 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001857|IPR008991|IPR018257|IPR038657 Ribosomal protein L19|Ribosomal protein L19 superfamily|Ribosomal protein L19, conserved site|Translation protein SH3-like domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.30.790|MF_00402|PF01245|PIRSF002191|PR00061|PS01015|SSF50104|TIGR01024 Alide2_3681 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002649|IPR016009|IPR023148|IPR029026|IPR029028 Alpha/beta knot methyltransferases|tRNA (guanine-N1-)-methyltransferase, C-terminal|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA (guanine-N1-)-methyltransferase, bacteria|tRNA methyltransferase TRMD/TRM10-type domain GO:0008033|GO:0052906 G3DSA:1.10.1270.20|G3DSA:3.40.1280.10|MF_00605|PF01746|PIRSF000386|SSF75217|TIGR00088 Alide2_3682 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002676|IPR009000|IPR011033|IPR011961|IPR027275|IPR036976 16S rRNA processing protein RimM|PRC-barrel domain|PRC-barrel-like superfamily|RimM, N-terminal|RimM, N-terminal domain superfamily|Translation protein, beta-barrel domain superfamily GO:0005840|GO:0006364|GO:0043022 G3DSA:2.30.30.240|G3DSA:2.40.30.60|MF_00014|PF01782|PF05239|SSF50346|SSF50447|TIGR02273 Alide2_3683 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000307|IPR023803 Ribosomal protein S16|Ribosomal protein S16 domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.1320.10|MF_00385|PF00886|SSF54565|TIGR00002 Alide2_3684 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016181 Acyl-CoA N-acyltransferase G3DSA:3.40.630.30|PF13420|SSF55729 Alide2_3686 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 PF01384 Alide2_3687 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018445|IPR038078 PhoU-like domain superfamily|Putative phosphate transport regulator G3DSA:1.20.58.220|PF01865|SSF109755 Alide2_3688 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011250|IPR027385 Outer membrane protein beta-barrel|Outer membrane protein/outer membrane enzyme PagP, beta-barrel G3DSA:2.40.160.20|PF13505|SSF56925 Alide2_3689 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007437 Protein of unknown function DUF486 PF04342|PIRSF021239 Alide2_3690 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030660 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|High-affinity branched-chain amino acid transport ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015658|GO:0015803|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039137|PS00211|SM00382|SSF52540 Alide2_3691 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|PS00211|SM00382|SSF52540 Alide2_3692 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3693 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_3694 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR003959|IPR008921|IPR021886|IPR027417|IPR032423 AAA C-terminal domain|AAA+ ATPase domain|ATPase, AAA-type, core|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|MgsA AAA+ ATPase C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0005524|GO:0006260 G3DSA:1.10.3710.10|G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF00004|PF12002|PF16193|SM00382|SSF48019|SSF52540 Alide2_3695 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR011946|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase, integron-type|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF13495|SSF56349|TIGR02249 Alide2_3696 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011051|IPR013096|IPR014710 Cupin 2, conserved barrel|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF07883|SSF51182 Alide2_3697 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001478|IPR036034 PDZ domain|PDZ superfamily GO:0005515 G3DSA:2.30.42.10|PF13180|SM00228|SSF50156 Alide2_3698 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003615|IPR029471 HNH endonuclease 5|HNH nuclease G3DSA:3.30.40.60|PF14279|SM00507 Alide2_3699 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010416 Protein of unknown function DUF1010 PF06231 Alide2_3700 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002716|IPR029060 PIN domain|PIN-like domain superfamily G3DSA:3.40.50.1010|PF13470|SSF88723 Alide2_3701 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|SSF52540 Alide2_3702 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF13276|PF13683|SSF53098 Alide2_3703 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527|SSF46689 Alide2_3705 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018660|IPR036328 C-type lysozyme inhibitor|C-type lysozyme inhibitor superfamily G3DSA:2.40.128.200|PF09864|SSF141488 Alide2_3707 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005122|IPR036895 Uracil-DNA glycosylase-like|Uracil-DNA glycosylase-like domain superfamily G3DSA:3.40.470.10|PF03167|SM00986|SM00987|SSF52141 Alide2_3708 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000537|IPR026046 UbiA prenyltransferase domain containing protein 1|UbiA prenyltransferase family GO:0004659|GO:0016021|GO:0016765 PF01040|PIRSF005355 Alide2_3709 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004564|IPR018323|IPR029046 Lipoprotein localisation LolA/LolB/LppX|Outer membrane lipoprotein carrier protein LolA, Proteobacteria|Outer membrane lipoprotein carrier protein LolA-like GO:0042597|GO:0042953|GO:0042954 G3DSA:2.50.20.10|MF_00240|PF03548|SSF89392|TIGR00547 Alide2_3710 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002543|IPR018541|IPR025199|IPR027417|IPR036388|IPR036390 DNA translocase FtsK, 4TM region|FtsK domain|FtsK gamma domain|P-loop containing nucleoside triphosphate hydrolase|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0000166|GO:0003677|GO:0005524 G3DSA:1.10.10.10|G3DSA:3.30.980.40|G3DSA:3.40.50.300|PF01580|PF09397|PF13491|SM00843|SSF46785|SSF52540 Alide2_3711 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000103|IPR005982|IPR008255|IPR023753|IPR036188 FAD/NAD(P)-binding domain|FAD/NAD(P)-binding domain superfamily|Pyridine nucleotide-disulphide oxidoreductase, class-II|Pyridine nucleotide-disulphide oxidoreductase, class-II, active site|Thioredoxin reductase GO:0004791|GO:0005737|GO:0016491|GO:0019430|GO:0055114 G3DSA:3.50.50.60|PF07992|PR00368|PR00469|PS00573|SSF51905|TIGR01292 Alide2_3712 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001383|IPR026569|IPR034704|IPR037147 L28p-like|Ribosomal protein L28|Ribosomal protein L28/L24|Ribosomal protein L28/L24 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.170.40|MF_00373|PF00830|SSF143800|TIGR00009 Alide2_3713 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001705|IPR011332|IPR018264|IPR038584 Ribosomal protein L33|Ribosomal protein L33 superfamily|Ribosomal protein L33, conserved site|Zinc-binding ribosomal protein GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.20.28.120|MF_00294|PF00471|PS00582|SSF57829|TIGR01023 Alide2_3714 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001678|IPR023267|IPR029063|IPR031341 RNA (C5-cytosine) methyltransferase|Ribosomal RNA small subunit methyltransferase F, N-terminal|S-adenosyl-L-methionine-dependent methyltransferase|SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 G3DSA:3.40.50.150|PF01189|PF17125|PR02008|SSF53335 Alide2_3715 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001555|IPR002376|IPR004607|IPR036477 Formyl transferase, N-terminal|Formyl transferase, N-terminal domain superfamily|Phosphoribosylglycinamide formyltransferase|Phosphoribosylglycinamide formyltransferase, active site GO:0004644|GO:0006189|GO:0009058|GO:0016742 G3DSA:3.40.50.170|MF_01930|PF00551|PS00373|SSF53328|TIGR00639 Alide2_3716 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007432|IPR036388|IPR036390 Protein of unknown function DUF480|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|MF_01584|PF04337|SSF46785 Alide2_3717 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_3718 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02771|SSF47203|SSF56645 Alide2_3719 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003615|IPR029471 HNH endonuclease 5|HNH nuclease G3DSA:3.30.40.60|PF14279|SM00507 Alide2_3720 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002606|IPR014729|IPR015864|IPR015865|IPR023465 FAD synthetase|Riboflavin kinase domain superfamily|Riboflavin kinase domain, bacterial/eukaryotic|Riboflavin kinase, bacterial|Rossmann-like alpha/beta/alpha sandwich fold GO:0003919|GO:0008531|GO:0009231 G3DSA:2.40.30.30|G3DSA:3.40.50.620|PF01687|PF06574|PIRSF004491|SM00904|SSF52374|SSF82114|TIGR00083 Alide2_3721 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001412|IPR002300|IPR002301|IPR009008|IPR009080|IPR010663|IPR013155|IPR014729|IPR023585 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Isoleucine-tRNA ligase|Isoleucine-tRNA ligase, type 1|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain|Zinc finger, FPG/IleRS-type GO:0000166|GO:0002161|GO:0004812|GO:0004822|GO:0005524|GO:0005737|GO:0006418|GO:0006428 G3DSA:1.10.730.20|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_02002|PF00133|PF06827|PF08264|PR00984|PS00178|SSF47323|SSF50677|SSF52374|TIGR00392 Alide2_3722 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MF_00161|PF01252|PR00781|PS00855|TIGR00077 Alide2_3723 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000843|IPR010982|IPR028082 LacI-type HTH domain|Lambda repressor-like, DNA-binding domain superfamily|Periplasmic binding protein-like I GO:0003677|GO:0006355 G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|SM00354|SSF47413|SSF53822 Alide2_3724 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.40.190.10|PF13343|SSF53850 Alide2_3725 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_3726 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_3727 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 Alide2_3728 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004843|IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA|Calcineurin-like phosphoesterase domain, ApaH type GO:0004115|GO:0016787 G3DSA:3.30.750.180|G3DSA:3.60.21.40|MF_00905|PF00149|SSF56300 Alide2_3729 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003841|IPR004633|IPR026022|IPR038078 Na/Pi-cotransporter II-related/YqeW-like protein|PhoU domain|PhoU-like domain superfamily|Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 G3DSA:1.20.58.220|PF01895|PF02690|SSF109755|TIGR00704 Alide2_3730 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016833|IPR038770 Putative sodium bile acid cotransporter|Sodium/solute symporter superfamily G3DSA:1.20.1530.20|PF13593|PIRSF026166 Alide2_3731 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_3732 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000086|IPR015797 NUDIX hydrolase domain|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.30.750.160|G3DSA:3.90.79.10|PF00293|SSF55811 Alide2_3733 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002364|IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain|Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS01162|SM00829|SSF50129|SSF51735 Alide2_3734 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_3735 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR001633|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase|PAS domain superfamily G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF12860|SM00052|SM00267|SSF141868|SSF55073|SSF55785|TIGR00254 Alide2_3736 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018389|IPR038404 TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.170|PF03480 Alide2_3737 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00081|SSF51735 Alide2_3738 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002823 Protein of unknown function DUF112, transmembrane PF01970 Alide2_3739 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009936 Protein of unknown function DUF1468 PF07331 Alide2_3740 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001482|IPR003593|IPR007831|IPR027417|IPR037257 AAA+ ATPase domain|General secretory system II, protein E, N-terminal|General secretory system II, protein E, N-terminal superfamily|P-loop containing nucleoside triphosphate hydrolase|Type II/IV secretion system protein G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PF05157|PS00662|SM00382|SSF160246|SSF52540 Alide2_3741 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|SSF53335 Alide2_3742 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005122|IPR026353|IPR036895 Hypoxanthine-DNA glycosylase|Uracil-DNA glycosylase-like|Uracil-DNA glycosylase-like domain superfamily G3DSA:3.40.470.10|PF03167|SM00986|SM00987|SSF52141|TIGR04274 Alide2_3743 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001130|IPR018228|IPR032466 Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family GO:0016788|GO:0016888 G3DSA:3.20.20.140|PF01026|PIRSF005902|PS01091|SSF51556 Alide2_3744 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021309 Protein of unknown function DUF2892 PF11127 Alide2_3745 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001845|IPR036388|IPR036390 HTH ArsR-type DNA-binding domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF01022|PR00778|SM00418|SSF46785 Alide2_3746 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR004675|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118|TIGR00778 Alide2_3747 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001940|IPR009003 Peptidase S1, PA clan|Peptidase S1C GO:0004252|GO:0006508 G3DSA:2.40.10.120|PF13365|PR00834|SSF50494 Alide2_3748 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011703|IPR027417 ATPase, AAA-3|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:1.10.8.300|G3DSA:3.40.50.300|PF07726|PIRSF002849|SSF52540 Alide2_3749 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002881 Domain of unknown function DUF58 PF01882 Alide2_3750 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002035|IPR024163|IPR036465 Aerotolerance regulator, N-terminal|von Willebrand factor A-like domain superfamily|von Willebrand factor, type A PF00092|PF07584|PF13519|SM00327|SSF53300 Alide2_3751 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR011904|IPR020845|IPR025110|IPR032387 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetate-CoA ligase|Acetyl-coenzyme A synthetase, N-terminal domain GO:0003824|GO:0003987|GO:0016208|GO:0019427 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|MF_01123|PF00501|PF13193|PF16177|PS00455|SSF56801|TIGR02188 Alide2_3752 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644|IPR003439|IPR003593|IPR005892|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|CBS domain|Glycine betaine transport ATP-binding subunit|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016020|GO:0016887|GO:0031460 G3DSA:3.10.580.10|G3DSA:3.40.50.300|PF00005|PF00571|PS00211|SM00382|SSF52540|SSF54631|TIGR01186 Alide2_3753 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_3754 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 G3DSA:3.40.190.10|G3DSA:3.40.190.100|PF04069|SSF53850 Alide2_3755 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000595|IPR012318|IPR014710|IPR018490|IPR036388|IPR036390 Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|SM00100|SM00419|SSF46785|SSF51206 Alide2_3756 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000362|IPR005677|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083 Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate hydratase, class II|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004333|GO:0006099|GO:0006106|GO:0016829|GO:0045239 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|MF_00743|PF00206|PF10415|PR00149|PS00163|SSF48557|TIGR00979 Alide2_3757 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004646|IPR004647|IPR011167|IPR036660 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain|Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain|Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily|Iron-dependent fumarate hydratase GO:0004333|GO:0006091|GO:0016829|GO:0016836 G3DSA:3.20.130.10|PF05681|PF05683|PIRSF001394|SSF117457|TIGR00722|TIGR00723 Alide2_3758 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023346 Lysozyme-like domain superfamily SSF53955 Alide2_3759 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002510|IPR035068|IPR036059 Metalloprotease TldD/PmbA|Metalloprotease TldD/PmbA superfamily|Metalloprotease TldD/PmbA, N-terminal GO:0006508|GO:0008237 G3DSA:3.30.2290.10|PF01523|SSF111283 Alide2_3760 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006839|IPR023153 PSPTO4464-like domain superfamily|Ribosome-associated, YjgA G3DSA:1.10.60.30|PF04751|PIRSF016183|SSF158710 Alide2_3761 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001453|IPR008284|IPR036425 MoaB/Mog domain|MoaB/Mog-like domain superfamily|Molybdenum cofactor biosynthesis, conserved site GO:0006777 G3DSA:3.40.980.10|PF00994|PS01078|SM00852|SSF53218|TIGR00177 Alide2_3762 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002328|IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0008270|GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|SM00829|SSF50129|SSF51735 Alide2_3763 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000415|IPR029479 Nitroreductase|Nitroreductase-like GO:0016491 G3DSA:3.40.109.10|PF00881|SSF55469 Alide2_3764 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001451|IPR005881|IPR011004 Hexapeptide repeat|Serine O-acetyltransferase|Trimeric LpxA-like superfamily GO:0005737|GO:0006535|GO:0009001 G3DSA:1.10.3130.10|G3DSA:2.160.10.10|PF00132|SSF51161|TIGR01172 Alide2_3765 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001537|IPR004384|IPR029026|IPR029028 Alpha/beta knot methyltransferases|RNA methyltransferase TrmJ/LasT|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 G3DSA:1.10.8.590|G3DSA:3.40.1280.10|PF00588|PIRSF004808|SSF75217|TIGR00050 Alide2_3766 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000760|IPR020550|IPR020583|IPR022337 Inositol monophosphatase, SuhB|Inositol monophosphatase, conserved site|Inositol monophosphatase, metal-binding site|Inositol monophosphatase-like GO:0008934|GO:0046854|GO:0046855 G3DSA:3.30.540.10|G3DSA:3.40.190.80|PF00459|PR00377|PR01959|PS00629|PS00630|SSF56655 Alide2_3767 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007387 TRAP transporter, small membrane protein DctQ PF04290 Alide2_3768 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit PF06808 Alide2_3769 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001650|IPR009351|IPR011545|IPR013701|IPR014001|IPR027417 DEAD/DEAH box helicase domain|DEAD/H associated|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Protein of unknown function DUF1006 GO:0003676|GO:0005524|GO:0016818 G3DSA:3.40.50.300|PF00270|PF00271|PF06224|PF08494|SM00487|SM00490|SSF52540 Alide2_3770 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018389|IPR026289|IPR038404 Solute binding protein, mannitol/chloroaromatic system-like|TRAP transporter solute receptor DctP superfamily|TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 G3DSA:3.40.190.10|G3DSA:3.40.190.170|PF03480|PIRSF039026 Alide2_3771 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005474|IPR005475|IPR005477|IPR009014|IPR020826|IPR029061|IPR033248 Deoxyxylulose-5-phosphate synthase|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase binding site|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase-like, pyrimidine-binding domain GO:0003824|GO:0008661|GO:0016114 G3DSA:3.40.50.920|G3DSA:3.40.50.970|MF_00315|PF02779|PF02780|PF13292|PS00801|PS00802|SM00861|SSF52518|SSF52922|TIGR00204 Alide2_3772 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000092|IPR008949|IPR033749 Isoprenoid synthase domain superfamily|Polyprenyl synthetase|Polyprenyl synthetase, conserved site GO:0008299 G3DSA:1.10.600.10|PF00348|PS00444|PS00723|SSF48576 Alide2_3773 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003761|IPR037004 Exonuclease VII, small subunit|Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 G3DSA:1.10.287.1040|MF_00337|PD028235|PF02609|PIRSF006488|SSF116842|TIGR01280 Alide2_3774 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015879|IPR017941|IPR036922 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0005506|GO:0016491|GO:0044237|GO:0051537|GO:0055114 G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|SSF50022|SSF55961 Alide2_3775 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic SSF103481 Alide2_3776 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001763|IPR036873 Rhodanese-like domain|Rhodanese-like domain superfamily G3DSA:3.40.250.10|PF00581|SM00450|SSF52821 Alide2_3777 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|SSF53720 Alide2_3778 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR004477|IPR004797|IPR025405|IPR036866 ComEC/Rec2-related protein|Competence protein ComEC/Rec2|Domain of unknown function DUF4131|Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like GO:0016021|GO:0030420 G3DSA:3.60.15.10|PF00753|PF03772|PF13567|SM00849|SSF56281|TIGR00360|TIGR00361 Alide2_3779 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013813|IPR035959 Endoribonuclease L-PSP/chorismate mutase-like|RutC-like superfamily G3DSA:3.30.1330.40|PF14588|SSF55298 Alide2_3780 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002205|IPR005742|IPR006691|IPR013757|IPR013758|IPR013760|IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal|DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat|DNA topoisomerase IV, subunit A, Gram-negative|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain superfamily|Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265 G3DSA:1.10.268.10|G3DSA:2.120.10.90|G3DSA:3.30.1360.40|G3DSA:3.90.199.10|MF_00936|PF00521|PF03989|SM00434|SSF101904|SSF56719|TIGR01062 Alide2_3781 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001241|IPR002288|IPR003594|IPR005737|IPR006171|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568|IPR036890 DNA gyrase B subunit, C-terminal|DNA topoisomerase IV, subunit B, Gram-negative|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B, C-terminal|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|TOPRIM domain GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_00938|PF00204|PF00986|PF01751|PF02518|PR00418|PR01098|PS00177|SM00387|SM00433|SSF54211|SSF55874|SSF56719 Alide2_3782 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_3784 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF13489|SSF53335 Alide2_3785 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002220|IPR005263|IPR013785|IPR020625 4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, active site GO:0003824|GO:0008840|GO:0009089|GO:0016829 G3DSA:3.20.20.70|MF_00418|PF00701|PIRSF001365|PR00146|PS00666|SM01130|SSF51569|TIGR00674 Alide2_3786 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010653 NlpB/DapX lipoprotein G3DSA:3.30.310.170|PF06804 Alide2_3788 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003347 JmjC domain G3DSA:1.10.10.2510|G3DSA:2.60.120.650|PF08007|SM00558|SSF51197 Alide2_3789 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:2.40.10.330|G3DSA:3.10.50.40|SSF54534 Alide2_3790 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008181|IPR029054|IPR036157 Deoxyuridine triphosphate nucleotidohydrolase|dUTPase-like|dUTPase-like superfamily GO:0004170|GO:0046080 G3DSA:2.70.40.10|MF_00116|PF00692|SSF51283|TIGR00576 Alide2_3792 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003382|IPR005252|IPR007085|IPR035929|IPR036551 CoaB-like superfamily|Coenzyme A biosynthesis bifunctional protein CoaBC|DNA/pantothenate metabolism flavoprotein, C-terminal|Flavin prenyltransferase-like|Flavoprotein GO:0003824|GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 G3DSA:3.40.50.10300|G3DSA:3.40.50.1950|PF02441|PF04127|SSF102645|SSF52507|TIGR00521 Alide2_3793 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004468|IPR017456|IPR017926|IPR027417|IPR029062 CTP synthase|CTP synthase, N-terminal|Class I glutamine amidotransferase-like|Glutamine amidotransferase|P-loop containing nucleoside triphosphate hydrolase GO:0003883|GO:0006221 G3DSA:3.40.50.300|G3DSA:3.40.50.880|MF_01227|PF00117|PF06418|SSF52317|SSF52540|TIGR00337 Alide2_3794 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006218|IPR006269|IPR013785 3-deoxy-8-phosphooctulonate synthase|Aldolase-type TIM barrel|DAHP synthetase I/KDSA GO:0003824|GO:0005737|GO:0008676|GO:0009058 G3DSA:3.20.20.70|MF_00056|PF00793|SSF51569|TIGR01362 Alide2_3795 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010753|IPR011008 Dimeric alpha-beta barrel|Domain of unknown function DUF1330 G3DSA:3.30.70.100|PF07045|SSF54909 Alide2_3796 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000941|IPR020809|IPR020810|IPR020811|IPR029017|IPR036849 Enolase|Enolase, C-terminal TIM barrel domain|Enolase, N-terminal|Enolase, conserved site|Enolase-like, C-terminal domain superfamily|Enolase-like, N-terminal GO:0000015|GO:0000287|GO:0004634|GO:0006096 G3DSA:3.20.20.120|G3DSA:3.30.390.10|MF_00318|PF00113|PF03952|PIRSF001400|PR00148|PS00164|SM01192|SM01193|SSF51604|SSF54826|TIGR01060 Alide2_3797 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007060|IPR023081 Cell division protein FtsB|Septum formation initiator FtsL/DivIC MF_00599|PF04977 Alide2_3798 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030679 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase GO:0003333|GO:0005524|GO:0015424|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|SM00382|SSF52540 Alide2_3799 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 Alide2_3800 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR010065|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|MetI-like superfamily GO:0016020|GO:0016021|GO:0022857|GO:0043190|GO:0055085|GO:0071705 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR01726 Alide2_3801 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001320|IPR001638|IPR018313 Ionotropic glutamate receptor|Solute-binding protein family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site GO:0004970|GO:0016020 G3DSA:3.40.190.10|PF00497|PS01039|SM00062|SM00079|SSF53850 Alide2_3802 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000397|IPR016153|IPR016154|IPR023212 Heat shock protein Hsp33|Heat shock protein Hsp33, C-terminal|Heat shock protein Hsp33, N-terminal|Heat shock protein Hsp33, helix hairpin bin domain superfamily GO:0005737|GO:0006457|GO:0051082 G3DSA:1.10.287.480|G3DSA:3.55.30.10|G3DSA:3.90.1280.10|PF01430|PIRSF005261|SSF118352|SSF64397 Alide2_3803 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001451|IPR011004 Hexapeptide repeat|Trimeric LpxA-like superfamily G3DSA:2.160.10.10|PF00132|SSF51161 Alide2_3804 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007402|IPR009078|IPR011197 Ferritin-like superfamily|Protein of unknown function DUF455|Uncharacterised conserved protein UCP012318 PF04305|PIRSF012318|SSF47240 Alide2_3805 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001633|IPR013976|IPR014408|IPR035919 EAL domain|EAL domain superfamily|Metal-dependent hydrolase HDOD|Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing G3DSA:1.10.3210.10|G3DSA:3.20.20.450|PF00563|PF08668|PIRSF003180|SM00052|SSF109604|SSF141868 Alide2_3806 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001633|IPR013976|IPR014408|IPR035919 EAL domain|EAL domain superfamily|Metal-dependent hydrolase HDOD|Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing G3DSA:1.10.3210.10|G3DSA:3.20.20.450|PF00563|PF08668|PIRSF003180|SM00052|SSF109604|SSF141868 Alide2_3807 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082 Alide2_3808 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR013655|IPR035965 PAS domain|PAS domain superfamily|PAS fold-3 GO:0005515 G3DSA:3.30.450.20|PF08447|SSF55785|TIGR00229 Alide2_3809 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002577|IPR036388|IPR036390|IPR036527 Helix-turn-helix, HxlR type|SCP2 sterol-binding domain superfamily|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|PF01638|SSF46785|SSF55718 Alide2_3810 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002176|IPR012337|IPR020563|IPR036397 Crossover junction endodeoxyribonuclease RuvC|Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0004520|GO:0006281|GO:0006310|GO:0008821 G3DSA:3.30.420.10|MF_00034|PF02075|PR00696|PS01321|SSF53098|TIGR00228 Alide2_3811 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527|SSF46689 Alide2_3812 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR036397 Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF13683|SSF53098 Alide2_3814 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001264|IPR011812|IPR023346|IPR036950 Biosynthetic peptidoglycan transglycosylase|Glycosyl transferase, family 51|Lysozyme-like domain superfamily|Penicillin binding protein transglycosylase domain GO:0009252|GO:0009274|GO:0016021|GO:0016763 G3DSA:1.10.3810.10|MF_00766|PF00912|SSF53955|TIGR02070 Alide2_3815 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006151|IPR011342|IPR013708|IPR022893|IPR036291 NAD(P)-binding domain superfamily|Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase|Shikimate dehydrogenase|Shikimate dehydrogenase family|Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0019632|GO:0050661|GO:0055114 G3DSA:3.40.50.10860|G3DSA:3.40.50.720|MF_00222|PF01488|PF08501|SSF51735|SSF53223|TIGR00507 Alide2_3816 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006260 TonB/TolA, C-terminal G3DSA:3.30.1150.10|PF13103|SSF74653|TIGR01352 Alide2_3817 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001900|IPR012340 Nucleic acid-binding, OB-fold|Ribonuclease II/R GO:0003723|GO:0004540 PF00773|SM00955|SSF50249 Alide2_3818 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000838|IPR007627|IPR013249|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor 70, ECF, conserved site|RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PS01063|SSF88659|SSF88946|TIGR02937 Alide2_3819 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009078|IPR012347 Ferritin-like|Ferritin-like superfamily G3DSA:1.20.1260.10|PF13668|SSF47240 Alide2_3820 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002327|IPR009056|IPR036909 Cytochrome c, class IA/ IB|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF00034|PR00604|SSF46626 Alide2_3821 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007016|IPR021797|IPR031726 O-antigen ligase-related|Protein glycosylation ligase domain|Virulence factor membrane-bound polymerase, C-terminal PF04932|PF11846|PF15864 Alide2_3822 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008886|IPR029058 Alpha/Beta hydrolase fold|Uncharacterised protein family UPF0227/Esterase YqiA G3DSA:3.40.50.1820|PF05728|SSF53474 Alide2_3823 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001182|IPR011923|IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site|Probable peptidoglycan glycosyltransferase FtsW/RodA|Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021|GO:0051301 MF_02079|PF01098|PS00428|TIGR02210 Alide2_3824 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002510|IPR025502|IPR035068|IPR036059 Metalloprotease TldD/PmbA|Metalloprotease TldD/PmbA superfamily|Metalloprotease TldD/PmbA, N-terminal|TldD GO:0006508|GO:0008237 G3DSA:3.30.2290.10|PF01523|PIRSF004919|SSF111283 Alide2_3825 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006218|IPR006219|IPR013785 Aldolase-type TIM barrel|DAHP synthetase I/KDSA|DHAP synthase, class 1 GO:0003824|GO:0003849|GO:0009058|GO:0009073 G3DSA:3.20.20.70|PF00793|PIRSF001361|SSF51569|TIGR00034 Alide2_3827 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000713|IPR004101|IPR005757|IPR013221|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Mur-like, catalytic domain superfamily|Murein peptide ligase GO:0005524|GO:0009058|GO:0009252|GO:0016874|GO:0016881|GO:0071555 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_02020|PF01225|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01081 Alide2_3829 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013740|IPR017937|IPR036249 Redoxin|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0016491|GO:0045454 G3DSA:3.40.30.10|PF08534|PS00194|SSF52833 Alide2_3830 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR001249|IPR011053 Acetyl-CoA biotin carboxyl carrier|Biotin/lipoyl attachment|Single hybrid motif GO:0003989|GO:0006633|GO:0009317 G3DSA:2.40.50.100|PF00364|PR01071|SSF51230|TIGR00531 Alide2_3831 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004549|IPR005479|IPR005481|IPR005482|IPR011054|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|Acetyl-CoA carboxylase, biotin carboxylase|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif GO:0005524|GO:0016874 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF02785|PF02786|PS00866|PS00867|SM00878|SSF51246|SSF52440|SSF56059|TIGR00514 Alide2_3832 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004498|IPR029063 Ribosomal protein L11 methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0006479|GO:0008276 G3DSA:3.40.50.150|MF_00735|PF06325|PIRSF000401|SSF53335|TIGR00406 Alide2_3833 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011723|IPR021834 Protein of unknown function DUF3426|Zinc finger/thioredoxin putative PF11906|PF13719|TIGR02098 Alide2_3834 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002173|IPR011611|IPR029056 Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Ribokinase-like GO:0016773 G3DSA:3.40.1190.20|PF00294|PS00583|SSF53613 Alide2_3835 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 PR00624 Alide2_3836 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000358|IPR009078|IPR012348 Ferritin-like superfamily|Ribonucleotide reductase small subunit family|Ribonucleotide reductase-like GO:0016491|GO:0055114 G3DSA:1.10.620.20|PF00268|PIRSF000355|SSF47240 Alide2_3837 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000788|IPR005144|IPR008926|IPR013346|IPR013509 ATP-cone domain|Ribonucleotide reductase R1 subunit, N-terminal|Ribonucleotide reductase large subunit, C-terminal|Ribonucleotide reductase large subunit, N-terminal|Ribonucleotide reductase, class I , alpha subunit GO:0004748|GO:0005524|GO:0006260|GO:0055114 G3DSA:3.20.70.20|PF00317|PF02867|PF03477|PR01183|PS00089|SSF48168|SSF51998|TIGR02506 Alide2_3838 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002502|IPR036505 N-acetylmuramoyl-L-alanine amidase domain|N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 G3DSA:3.40.80.10|PF01510|SM00644|SSF55846 Alide2_3839 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR011006|IPR025662|IPR027417 AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Signal transduction response regulator, receiver domain GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PR01590|PS00675|SM00382|SM00448|SSF46689|SSF52172|SSF52540 Alide2_3840 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR003594|IPR003661|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain|PAS domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF13188|SM00387|SM00388|SSF47384|SSF55785|SSF55874 Alide2_3842 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 PF01578 Alide2_3843 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000897|IPR003593|IPR004125|IPR004780|IPR013822|IPR022941|IPR027417|IPR036225|IPR036891 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|SRP/SRP receptor, N-terminal|Signal recognition particle protein Ffh|Signal recognition particle, SRP54 subunit|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, M-domain|Signal recognition particle, SRP54 subunit, M-domain superfamily|Signal recognition particle, SRP54 subunit, helical bundle GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500 G3DSA:1.10.260.30|G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00306|PF00448|PF02881|PF02978|PS00300|SM00382|SM00962|SM00963|SSF47364|SSF47446|SSF52540|TIGR00959 Alide2_3844 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002792|IPR005839|IPR006463|IPR006638|IPR007197|IPR013848|IPR020612|IPR023404|IPR038135 Elp3/MiaB/NifB|Methylthiotransferase|Methylthiotransferase, N-terminal|Methylthiotransferase, N-terminal domain superfamily|Methylthiotransferase, conserved site|Radical SAM|Radical SAM, alpha/beta horseshoe|TRAM domain|tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0003824|GO:0005737|GO:0006400|GO:0016740|GO:0051536|GO:0051539 G3DSA:3.40.50.12160|G3DSA:3.80.30.20|MF_01864|PF00919|PF01938|PF04055|PS01278|SM00729|SSF102114|TIGR00089|TIGR01574 Alide2_3847 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007963|IPR024191|IPR036034 PDZ superfamily|Peptidase M61|Peptidase M61, catalytic domain GO:0005515 G3DSA:1.10.390.60|G3DSA:2.30.42.10|G3DSA:2.60.40.3650|PF05299|PIRSF016493|SSF50156|SSF55486 Alide2_3848 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009094|IPR012336|IPR017937|IPR018950|IPR036249 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily|Disulphide bond isomerase, DsbC/G, N-terminal|Thioredoxin, conserved site|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0042597|GO:0045454 G3DSA:3.10.450.70|G3DSA:3.40.30.10|PF10411|PF13098|PS00194|SSF52833|SSF54423 Alide2_3849 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002938|IPR018168|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily|Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114|GO:0071949 G3DSA:3.30.9.50|G3DSA:3.50.50.60|PF01494|PR00420|PS01304|SSF51905 Alide2_3850 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004396|IPR006073|IPR012675|IPR012676|IPR013029|IPR023192|IPR027417 Beta-grasp domain superfamily|GTP binding domain|P-loop containing nucleoside triphosphate hydrolase|Ribosome-binding ATPase YchF/Obg-like ATPase 1|TGS-like|TGS-like domain superfamily|YchF, C-terminal domain GO:0005525 G3DSA:1.10.150.300|G3DSA:3.10.20.30|G3DSA:3.40.50.300|MF_00944|PF01926|PF06071|PIRSF006641|PR00326|SSF52540|SSF81271|TIGR00092 Alide2_3851 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025166|IPR038488 Integrase, DNA-binding domain|Integrase, DNA-binding domain superfamily G3DSA:3.30.160.390|PF13356 Alide2_3852 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527|SSF46689 Alide2_3853 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025948 HTH-like domain PF13276 Alide2_3854 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR010921 Transposase IS3/IS911family|Trp repressor/replication initiator GO:0003677|GO:0004803|GO:0006313|GO:0043565 PF01527|SSF48295 Alide2_3855 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008878 Transposase IS66, Orf2 PF05717 Alide2_3856 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004291|IPR024463|IPR024474|IPR039552 Transposase IS66, C-terminal|Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66 PF03050|PF13005|PF13007|PF13817 Alide2_3858 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_3860 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878|IPR036250|IPR037069 Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|SSF47203|SSF56645 Alide2_3861 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001853|IPR036249 DSBA-like thioredoxin domain|Thioredoxin-like superfamily GO:0015035 G3DSA:3.40.30.10|PF01323|SSF52833 Alide2_3862 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1720.10|PF07690|SSF103473 Alide2_3863 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010662|IPR029058 Alpha/Beta hydrolase fold|Putative hydrolase RBBP9/YdeN GO:0016787 G3DSA:3.40.50.1820|PF06821|SSF53474 Alide2_3864 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|SSF103473 Alide2_3865 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008567|IPR013785 3-keto-5-aminohexanoate cleavage enzyme|Aldolase-type TIM barrel GO:0003824|GO:0016740|GO:0019475 G3DSA:3.20.20.70|PF05853 Alide2_3866 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 G3DSA:3.60.130.10|PF02668|SSF51197 Alide2_3867 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002364|IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain|Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS01162|SM00829|SSF50129|SSF51735 Alide2_3868 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006015|IPR006016|IPR012312|IPR014729 Haemerythrin-like|Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:1.20.120.520|G3DSA:3.40.50.620|PF00582|PF01814|PR01438|SSF52402 Alide2_3869 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017941|IPR036922 Rieske [2Fe-2S] iron-sulphur domain|Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 G3DSA:2.102.10.10|PF00355|SSF50022 Alide2_3870 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR003593|IPR011990|IPR016032|IPR027417|IPR036388 AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Signal transduction response regulator, C-terminal effector|Tetratricopeptide-like helical domain superfamily|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0005515|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.25.40.10|PF00196|PF13401|PR00038|SM00421|SSF46894|SSF52540 Alide2_3871 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010727 Protein of unknown function DUF1302 PF06980 Alide2_3872 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010752 Protein of unknown function DUF1329 PF07044 Alide2_3873 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015943|IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|PF14870|SSF110296 Alide2_3874 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004869 Membrane transport protein MMPL domain GO:0016020 G3DSA:1.20.1640.10|PF03176|SSF82866 Alide2_3875 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 PF03601 Alide2_3877 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032816 SNARE associated Golgi protein PF09335 Alide2_3878 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001269|IPR004652|IPR013785|IPR018517|IPR024036|IPR032887 Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase B|tRNA-dihydrouridine synthase, TIM-barrel, NifR3|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine synthase, putative, C-terminal GO:0002943|GO:0003824|GO:0008033|GO:0016491|GO:0017150|GO:0050660|GO:0055114 G3DSA:1.10.1200.80|G3DSA:3.20.20.70|MF_02042|PF01207|PIRSF006621|PS01136|SSF51395|TIGR00737 Alide2_3879 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002197|IPR005412|IPR009057 DNA binding HTH domain, Fis-type|DNA-binding protein Fis|Homeobox-like domain superfamily GO:0003677|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF02954|PIRSF002097|PR01590|SSF46689 Alide2_3880 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002695|IPR011607|IPR016193|IPR024051|IPR036914 AICAR transformylase, duplicated domain superfamily|Bifunctional purine biosynthesis protein PurH-like|Cytidine deaminase-like|Methylglyoxal synthase-like domain|Methylglyoxal synthase-like domain superfamily GO:0003824|GO:0003937|GO:0004643|GO:0006164 G3DSA:3.40.140.20|G3DSA:3.40.50.1380|MF_00139|PF01808|PF02142|PIRSF000414|SM00798|SM00851|SSF52335|SSF53927|TIGR00355 Alide2_3881 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004639|IPR005814|IPR015421|IPR015422|IPR015424 Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0003824|GO:0008483|GO:0030170|GO:0033014|GO:0042286 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00375|PF00202|SSF53383|TIGR00713 Alide2_3882 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013749|IPR029056 Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Ribokinase-like G3DSA:3.40.1190.20|PF08543|SSF53613 Alide2_3883 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024935 Rubredoxin domain GO:0005506 G3DSA:2.20.28.10|PF00301|PR00163|SSF57802 Alide2_3884 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.12740|PF00072|SM00448|SSF52172 Alide2_3885 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.12740|PF00072|SM00448|SSF52172 Alide2_3886 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002545|IPR036061 CheW-like domain|CheW-like domain superfamily GO:0006935|GO:0007165 G3DSA:2.40.50.180|PF01584|SM00260|SSF50341 Alide2_3887 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004089|IPR004090|IPR029095 Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain|NarX-like, N-terminal GO:0004888|GO:0006935|GO:0007165|GO:0016020 G3DSA:1.10.287.950|PF00015|PF13675|PR00260|SM00283|SSF58104 Alide2_3888 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR002545|IPR003594|IPR004105|IPR004358|IPR008207|IPR011006|IPR036061|IPR036097|IPR036641|IPR036890|IPR037006 CheW-like domain|CheW-like domain superfamily|CheY-like superfamily|HPT domain superfamily|Histidine kinase CheA-like, homodimeric domain|Histidine kinase CheA-like, homodimeric domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.560|G3DSA:1.20.120.160|G3DSA:2.30.30.40|G3DSA:2.40.50.180|G3DSA:3.30.565.10|G3DSA:3.40.50.12740|PF00072|PF01584|PF01627|PF02518|PF02895|PR00344|SM00073|SM00260|SM00387|SM00448|SM01231|SSF47226|SSF47384|SSF50341|SSF52172|SSF55874 Alide2_3889 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003774 Protein of unknown function UPF0301 G3DSA:3.40.1740.10|MF_00758|PF02622|SSF143456 Alide2_3890 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005227|IPR006641|IPR012337|IPR037027 Putative pre-16S rRNA nuclease|Ribonuclease H-like superfamily|YqgF/RNase H-like domain|YqgF/RNase H-like domain superfamily GO:0006139|GO:0006364 G3DSA:3.30.420.140|MF_00651|PF03652|SM00732|SSF53098|TIGR00250 Alide2_3891 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271 Alide2_3892 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002082|IPR006130|IPR006131|IPR006132|IPR036901 Aspartate carbamoyltransferase|Aspartate/ornithine carbamoyltransferase|Aspartate/ornithine carbamoyltransferase superfamily|Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain|Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0004070|GO:0006207|GO:0006520|GO:0016597|GO:0016743 G3DSA:3.40.50.1370|MF_00001|PF00185|PF02729|PR00100|PR00101|PS00097|SSF53671|TIGR00670 Alide2_3893 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011059|IPR013108|IPR032466 Amidohydrolase 3|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF07969|SSF51338|SSF51556|TIGR00857 Alide2_3894 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 PF01553|SM00563|SSF69593 Alide2_3895 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2 GO:0005524|GO:0016887|GO:0022857|GO:0043190|GO:0055085 G3DSA:3.40.50.300|PF00005|PF08402|PS00211|SM00382|SSF50331|SSF52540 Alide2_3896 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_3897 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006659|IPR006660|IPR036249 Arsenate reductase|Arsenate reductase-like|Thioredoxin-like superfamily GO:0008794|GO:0055114 G3DSA:3.40.30.10|PF03960|SSF52833|TIGR00014 Alide2_3898 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001478|IPR001940|IPR009003|IPR011782|IPR036034 PDZ domain|PDZ superfamily|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do GO:0004252|GO:0005515|GO:0006508 G3DSA:2.30.42.10|G3DSA:2.40.10.120|PF13180|PF13365|PR00834|SM00228|SSF50156|SSF50494|TIGR02037 Alide2_3899 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 Alide2_3900 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 Alide2_3901 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001736|IPR025202 Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824 G3DSA:3.30.870.10|PF13091|SM00155|SSF56024 Alide2_3902 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001041|IPR001221|IPR001433|IPR005797|IPR006058|IPR008333|IPR012675|IPR016174|IPR017938|IPR027387|IPR036010|IPR039261 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|Cytochrome b/b6, N-terminal|Cytochrome b/b6-like domain superfamily|Di-haem cytochrome, transmembrane|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0009055|GO:0016020|GO:0016491|GO:0022904|GO:0051536|GO:0051537|GO:0055114 G3DSA:1.20.810.10|G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00033|PF00111|PF00175|PF00970|PR00410|PS00197|SSF52343|SSF54292|SSF63380|SSF81342 Alide2_3903 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000883|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|SSF81442 Alide2_3905 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003813|IPR005797|IPR016174|IPR017896|IPR017900|IPR027387 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Cytochrome b/b6, N-terminal|Cytochrome b/b6-like domain superfamily|Di-haem cytochrome, transmembrane|F420-non-reducing hydrogenase iron-sulfur subunit D GO:0009055|GO:0016020|GO:0016491|GO:0022904|GO:0055114 G3DSA:1.20.810.10|G3DSA:3.30.70.20|PF00033|PF02662|PF12838|PS00198|SSF54862|SSF81342 Alide2_3906 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003782|IPR036249 Copper chaperone SCO1/SenC|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF02630|SSF52833 Alide2_3907 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000537|IPR006369 Protohaem IX farnesyltransferase|UbiA prenyltransferase family GO:0008495|GO:0016021|GO:0016765|GO:0048034 G3DSA:1.10.357.140|MF_00154|PF01040|TIGR01473 Alide2_3908 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000883|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|PR01165|SSF81442 Alide2_3909 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008972 Cupredoxin G3DSA:2.60.40.420|SSF49503 Alide2_3911 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 PF02628 Alide2_3912 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007452 Translocation and assembly module TamB PF04357 Alide2_3913 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000184|IPR035243 Bacterial surface antigen (D15)|TamA, POTRA domain 1 GO:0019867 G3DSA:2.40.160.50|G3DSA:3.10.20.310|PF01103|PF17243 Alide2_3914 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008912 Uncharacterised protein family CoxE-like PF05762 Alide2_3915 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|G3DSA:3.30.1330.120|PF03972|SSF103378 Alide2_3916 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_3917 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|SSF47203|SSF56645 Alide2_3918 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_3919 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288 Alide2_3920 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3921 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain G3DSA:3.40.630.30|PF13302|SSF55729 Alide2_3922 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR003959|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF00004|SM00382|SSF52540 Alide2_3923 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009056|IPR024167|IPR036909 Cytochrome c-like domain|Cytochrome c-like domain superfamily|Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 G3DSA:1.10.760.10|PF13442|PIRSF000005|SSF46626 Alide2_3924 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:3.40.50.620|PF00582|PR01438|SSF52402 Alide2_3925 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014993 Protein of unknown function DUF1841 PF08897 Alide2_3926 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR012794|IPR014757|IPR029016|IPR036388|IPR036390 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR|GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355|GO:0045893|GO:0046278 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781|TIGR02431 Alide2_3927 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004163|IPR004165|IPR012792|IPR037171 3-oxoacid CoA-transferase, subunit A|Coenzyme A transferase binding site|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|PS01273|SM00882|SSF100950|TIGR02429 Alide2_3928 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004164|IPR004165|IPR012791|IPR037171 3-oxoacid CoA-transferase, subunit B|Coenzyme A transferase active site|Coenzyme A transferase family I|NagB/RpiA transferase-like GO:0008410 G3DSA:3.40.1080.10|PF01144|PS01274|SM00882|SSF100950|TIGR02428 Alide2_3929 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR012793|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Beta-ketoadipyl CoA thiolase|Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747|GO:0019619 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930|TIGR02430 Alide2_3930 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 Alide2_3931 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3933 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005119|IPR036388 LysR, substrate-binding|Winged helix-like DNA-binding domain superfamily G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF03466|SSF53850 Alide2_3934 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|SSF53850 Alide2_3935 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR011650|IPR017439|IPR036264 Amidohydrolase|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|SSF53187|SSF55031|TIGR01891 Alide2_3936 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064|IPR019546 Bordetella uptake gene|Twin-arginine translocation pathway, signal sequence, bacterial/archaeal GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850|TIGR01409 Alide2_3937 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3938 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005656|IPR036148 MmgE/PrpD|MmgE/PrpD superfamily GO:0016829 G3DSA:1.10.4100.10|G3DSA:3.30.1330.120|PF03972|SSF103378 Alide2_3939 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007400 PrpF protein G3DSA:3.10.310.10|PF04303|SSF54506 Alide2_3940 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_3941 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000573|IPR004431|IPR015928 3-isopropylmalate dehydratase, small subunit|Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase, swivel GO:0003861|GO:0009098|GO:0009316 G3DSA:3.20.19.10|PF00694|SSF52016|TIGR00171 Alide2_3942 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001030|IPR004430|IPR015931|IPR018136|IPR036008 3-isopropylmalate dehydratase, large subunit|Aconitase family, 4Fe-4S cluster binding site|Aconitase, iron-sulfur domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0003861|GO:0009098|GO:0051539 G3DSA:3.30.499.10|G3DSA:3.30.499.20|PF00330|PR00415|PS00450|PS01244|SSF53732|TIGR00170 Alide2_3943 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015813|IPR018523 Isocitrate lyase/phosphorylmutase, conserved site|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF13714|PS00161|SSF51621 Alide2_3944 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR011663|IPR028978|IPR036388|IPR036390 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|SM00345|SM00866|SSF46785|SSF64288 Alide2_3945 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003148|IPR004771|IPR006153|IPR036291|IPR038770 Cation/H+ exchanger|K+/H+ exchanger|NAD(P)-binding domain superfamily|Regulator of K+ conductance, N-terminal|Sodium/solute symporter superfamily GO:0006812|GO:0006813|GO:0008324|GO:0015299|GO:0016021|GO:0055085 G3DSA:1.20.1530.20|G3DSA:3.40.50.720|PF00999|PF02254|SSF51735|TIGR00932 Alide2_3946 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 Alide2_3947 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002586|IPR027417 CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF01656|PIRSF009320|SSF52540 Alide2_3948 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025421 Protein of unknown function DUF4148 PF13663 Alide2_3949 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_3950 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001537|IPR016914|IPR029026|IPR029028 Alpha/beta knot methyltransferases|tRNA (cytidine/uridine-2'-O-)-methyltransferase|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type GO:0001510|GO:0003723|GO:0006396|GO:0008168|GO:0008173 G3DSA:3.40.1280.10|MF_01885|PF00588|PIRSF029256|SSF75217 Alide2_3951 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271 Alide2_3952 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029063 S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|SSF53335 Alide2_3953 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001505|IPR002429|IPR008972|IPR009056|IPR011759|IPR014222|IPR036257|IPR036909 Copper centre Cu(A)|Cupredoxin|Cytochrome C oxidase subunit II, transmembrane domain|Cytochrome C oxidase subunit II, transmembrane domain superfamily|Cytochrome c oxidase subunit II-like C-terminal|Cytochrome c oxidase, subunit II|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0004129|GO:0005507|GO:0009055|GO:0016020|GO:0016021|GO:0016491|GO:0020037|GO:0022900 G3DSA:1.10.287.90|G3DSA:1.10.760.10|G3DSA:2.60.40.420|PF00116|PF02790|PF13442|PR01166|PS00078|SSF46626|SSF49503|SSF81464|TIGR02866 Alide2_3954 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000883|IPR014241|IPR023615|IPR036927 Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I bacterial type|Cytochrome c oxidase, subunit I, copper-binding site|Cytochrome c oxidase-like, subunit I superfamily GO:0004129|GO:0005886|GO:0009060|GO:0015990|GO:0016021|GO:0020037|GO:0055114 G3DSA:1.20.210.10|PF00115|PR01165|PS00077|SSF81442|TIGR02891 Alide2_3956 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007533|IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11|Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily GO:0005507 G3DSA:2.60.370.10|PF04442|PIRSF005413|SSF110111 Alide2_3957 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021344 Protein of unknown function DUF2970 PF11174 Alide2_3958 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000298|IPR013833|IPR035973 Cytochrome c oxidase subunit III-like|Cytochrome c oxidase subunit III-like superfamily|Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0015002|GO:0016020|GO:0022904 G3DSA:1.10.287.70|G3DSA:1.20.120.80|PF00510|SSF81452 Alide2_3959 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021313 Protein of unknown function DUF2909 PF11137 Alide2_3960 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002994 Surfeit locus 1/Shy1 GO:0016020 PF02104 Alide2_3961 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036249 Thioredoxin-like superfamily SSF52833 Alide2_3962 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 PF02628 Alide2_3963 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000537|IPR006369|IPR030470 Protohaem IX farnesyltransferase|UbiA prenyltransferase conserved site|UbiA prenyltransferase family GO:0008495|GO:0016021|GO:0016765|GO:0048034 G3DSA:1.10.357.140|MF_00154|PF01040|PS00943|TIGR01473 Alide2_3964 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003782|IPR036249 Copper chaperone SCO1/SenC|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF02630|SSF52833 Alide2_3965 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082 Alide2_3966 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000943|IPR007627|IPR007630|IPR009042|IPR012759|IPR013324|IPR013325|IPR014284|IPR036388 RNA polymerase sigma factor RpoH, proteobacteria|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 4|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.10.10|G3DSA:1.10.601.10|MF_00961|PF00140|PF04542|PF04545|PR00046|PS00715|PS00716|SSF88659|SSF88946|TIGR02392|TIGR02937 Alide2_3967 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004291|IPR024463|IPR024474|IPR039552 Transposase IS66, C-terminal|Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66 PF03050|PF13005|PF13007|PF13817 Alide2_3968 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008878 Transposase IS66, Orf2 PF05717 Alide2_3969 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR010921 Transposase IS3/IS911family|Trp repressor/replication initiator GO:0003677|GO:0004803|GO:0006313|GO:0043565 PF01527|SSF48295 Alide2_3970 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025948 HTH-like domain PF13276 Alide2_3971 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057 Homeobox-like domain superfamily|Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PF01527|SSF46689 Alide2_3973 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007730|IPR036680 Sporulation-like domain|Sporulation-like domain superfamily GO:0042834 G3DSA:3.30.70.1070|PF05036|SSF110997 Alide2_3974 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021719 Proteinase inhibitor I78 G3DSA:3.30.10.10|PF11720 Alide2_3975 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004559|IPR006638|IPR007197|IPR010723|IPR023404 Elp3/MiaB/NifB|HemN, C-terminal|Oxygen-independent coproporphyrinogen III oxidase-like|Radical SAM|Radical SAM, alpha/beta horseshoe GO:0003824|GO:0004109|GO:0005737|GO:0006779|GO:0051536|GO:0055114 G3DSA:3.80.30.20|PF04055|PF06969|SM00729|SSF102114|TIGR00539 Alide2_3976 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002637|IPR020922|IPR029001 Ham1-like protein|Inosine triphosphate pyrophosphatase-like|dITP/XTP pyrophosphatase GO:0009143|GO:0017111|GO:0047429 G3DSA:3.90.950.10|MF_01405|PF01725|SSF52972|TIGR00042 Alide2_3977 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001247|IPR002381|IPR015847|IPR018336|IPR020568|IPR027408|IPR036345 Exoribonuclease, PH domain 2 superfamily|Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|PNPase/RNase PH domain superfamily|Ribonuclease PH, bacterial-type|Ribonuclease PH, conserved site|Ribosomal protein S5 domain 2-type fold GO:0000049|GO:0008033|GO:0009022 G3DSA:3.30.230.70|MF_00564|PF01138|PF03725|PS01277|SSF54211|SSF55666|TIGR01966 Alide2_3978 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001932|IPR036457 PPM-type phosphatase domain|PPM-type phosphatase domain superfamily GO:0003824 G3DSA:3.60.40.10|PF13672|SM00331|SM00332|SSF81606 Alide2_3979 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000719|IPR008271|IPR011009 Protein kinase domain|Protein kinase-like domain superfamily|Serine/threonine-protein kinase, active site GO:0004672|GO:0005524|GO:0006468 G3DSA:1.10.510.10|G3DSA:3.30.200.20|PF00069|PS00108|SM00220|SSF56112 Alide2_3980 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005229|IPR013527|IPR013551 Conserved hypothetical protein CHP00255|Domain of unknown function DUF1732|YicC-like, N-terminal PF03755|PF08340|TIGR00255 Alide2_3981 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015943|IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain|WD40/YVTN repeat-like-containing domain superfamily GO:0005515 G3DSA:2.130.10.10|PF14870|SSF110296 Alide2_3984 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006949|IPR011749 Baseplate protein J-like|Conserved hypothetical protein CHP02243 PF04865|TIGR02243 Alide2_3985 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007048 GpW/Gp25/anti-adapter protein IraD G3DSA:3.10.450.40|PF04965|SSF160719 Alide2_3987 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR037026 Vgr protein, OB-fold domain superfamily G3DSA:2.40.50.230|SSF69255 Alide2_3991 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025295 Domain of unknown function DUF4157 PF13699 Alide2_3993 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025295 Domain of unknown function DUF4157 PF13699 Alide2_3994 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR003959|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF00004|SM00382|SSF52540 Alide2_3995 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025351 Protein of unknown function DUF4255 PF14065 Alide2_3998 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010667|IPR011747 Bacteriophage T4, Gp19, tail tube|Conserved hypothetical protein CHP02241 GO:0005198 PF06841|TIGR02241 Alide2_3999 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR020287|IPR035089 Tail sheath protein, C-terminal domain|Tail sheath protein, subtilisin-like domain PF04984|PF17482 Alide2_4000 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008145|IPR017665|IPR020590|IPR027417 Guanylate kinase|Guanylate kinase, conserved site|Guanylate kinase/L-type calcium channel beta subunit|P-loop containing nucleoside triphosphate hydrolase GO:0004385|GO:0006163 G3DSA:3.30.63.10|G3DSA:3.40.50.300|MF_00328|PF00625|PS00856|SM00072|SSF52540|TIGR03263 Alide2_4001 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003716|IPR006110|IPR012293|IPR036161 DNA-directed RNA polymerase, omega subunit|RNA polymerase subunit, RPB6/omega|RNA polymerase, subunit omega/K/RPB6|RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 G3DSA:3.90.940.10|MF_00366|PF01192|SM01409|SSF63562|TIGR00690 Alide2_4002 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002912|IPR003607|IPR004095|IPR004811|IPR007685|IPR012675|IPR012676 ACT domain|Beta-grasp domain superfamily|HD/PDEase domain|RelA/SpoT|RelA/SpoT family|TGS|TGS-like GO:0015969 G3DSA:1.10.3210.10|G3DSA:3.10.20.30|G3DSA:3.30.460.10|G3DSA:3.30.70.260|PF02824|PF04607|PF13291|PF13328|SM00471|SM00954|SSF109604|SSF55021|SSF81271|SSF81301|TIGR00691 Alide2_4003 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001437|IPR006358|IPR018151|IPR022691|IPR023459|IPR028624|IPR036805|IPR036953 Transcription elongation factor GreA/GreB|Transcription elongation factor GreA/GreB family|Transcription elongation factor GreA/GreB, C-terminal domain superfamily|Transcription elongation factor GreB|Transcription elongation factor, GreA/GreB, C-terminal|Transcription elongation factor, GreA/GreB, N-terminal|Transcription elongation factor, GreA/GreB, N-terminal domain superfamily|Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784|GO:0070063 G3DSA:1.10.287.180|G3DSA:3.10.50.30|MF_00105|MF_00930|PF01272|PF03449|PIRSF006092|PS00829|PS00830|SSF46557|SSF54534|TIGR01461 Alide2_4005 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000589|IPR005290|IPR009068 Ribosomal protein S15|Ribosomal protein S15, bacterial-type|S15/NS1, RNA-binding GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.287.10|MF_01343_B|PD157043|PF00312|PS00362|SM01387|SSF47060|TIGR00952 Alide2_4006 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001247|IPR003029|IPR004087|IPR004088|IPR012162|IPR012340|IPR015847|IPR015848|IPR020568|IPR022967|IPR027408|IPR036345|IPR036456|IPR036612 Exoribonuclease, PH domain 2 superfamily|Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|K Homology domain|K Homology domain, type 1|K Homology domain, type 1 superfamily|Nucleic acid-binding, OB-fold|PNPase/RNase PH domain superfamily|Polyribonucleotide nucleotidyltransferase|Polyribonucleotide nucleotidyltransferase, RNA-binding domain|Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily|RNA-binding domain, S1|Ribosomal protein S5 domain 2-type fold|S1 domain GO:0003676|GO:0003723|GO:0004654|GO:0006396|GO:0006402 G3DSA:2.40.50.140|G3DSA:3.30.1370.10|G3DSA:3.30.230.70|MF_01595|PF00013|PF00575|PF01138|PF03725|PF03726|PIRSF005499|SM00316|SM00322|SSF46915|SSF50249|SSF54211|SSF54791|SSF55666|TIGR03591 Alide2_4007 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011032|IPR013149|IPR013154|IPR014189|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain|Quinone oxidoreductase PIG3 GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735|TIGR02824 Alide2_4008 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000652|IPR013785|IPR020861|IPR022896|IPR035990 Aldolase-type TIM barrel|Triosephosphate isomerase|Triosephosphate isomerase superfamily|Triosephosphate isomerase, active site|Triosephosphate isomerase, bacterial/eukaryotic GO:0003824|GO:0004807|GO:0006096 G3DSA:3.20.20.70|MF_00147_B|PF00121|PS00171|SSF51351|TIGR00419 Alide2_4009 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PF03840|PR01651|TIGR00810 Alide2_4010 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000440|IPR023043|IPR038430 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid|NADH:ubiquinone oxidoreductase, subunit 3 superfamily|NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0016651|GO:0055114 G3DSA:1.20.58.1610|MF_01394|PF00507 Alide2_4011 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006137|IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit|NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0008137|GO:0048038|GO:0051536|GO:0051539|GO:0055114 G3DSA:3.40.50.12280|MF_01356|PF01058|PS01150|SSF56770|TIGR01957 Alide2_4012 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001268|IPR010218|IPR020396|IPR037232 NADH dehydrogenase, subunit C|NADH:ubiquinone oxidoreductase, 30kDa subunit|NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily|NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0008137|GO:0016651|GO:0055114 G3DSA:3.30.460.80|MF_01357|PD001581|PF00329|PS00542|SSF143243|TIGR01961 Alide2_4013 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001135|IPR014029|IPR022885|IPR029014|IPR038290 NAD(P)H-quinone oxidoreductase subunit D/H|NADH-quinone oxidoreductase, subunit D|NADH-quinone oxidoreductase, subunit D superfamily|NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site|[NiFe]-hydrogenase, large subunit GO:0016651|GO:0048038|GO:0051287|GO:0055114 G3DSA:1.10.645.20|MF_01358|PF00346|PS00535|SSF56762|TIGR01962 Alide2_4014 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002023|IPR036249 NADH-quinone oxidoreductase subunit E-like|Thioredoxin-like superfamily GO:0016491|GO:0055114 G3DSA:1.10.10.1590|G3DSA:3.40.30.10|PF01257|PIRSF000216|PS01099|SSF52833|TIGR01958 Alide2_4015 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001949|IPR011537|IPR011538|IPR019554|IPR019575|IPR037207|IPR037225 NADH ubiquinone oxidoreductase, F subunit|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain|NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily|NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site|Soluble ligand binding domain GO:0008137|GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 G3DSA:1.20.1440.230|G3DSA:3.10.20.600|G3DSA:3.40.50.11540|PF01512|PF10531|PF10589|PS00645|SM00928|SSF140490|SSF142019|SSF142984|TIGR01959 Alide2_4016 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000283|IPR006656|IPR010228|IPR019574|IPR036010 2Fe-2S ferredoxin-like superfamily|Molybdopterin oxidoreductase|NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site|NADH:ubiquinone oxidoreductase, subunit G|NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0008137|GO:0009055|GO:0016020|GO:0016491|GO:0016651|GO:0042773|GO:0051536|GO:0055114 G3DSA:3.10.20.740|G3DSA:3.30.70.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF10588|PF13510|PS00641|PS00642|PS00643|SM00929|SSF53706|SSF54292|SSF54862|TIGR01973 Alide2_4017 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001694|IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site|NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 MF_01350|PF00146|PS00667|PS00668 Alide2_4018 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010226|IPR017896|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 G3DSA:3.30.70.3270|MF_01351|PF12838|PS00198|SSF54862|TIGR01971 Alide2_4019 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 G3DSA:1.20.120.1200|PF00499 Alide2_4020 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001133|IPR039428 NADH-ubiquinone oxidoreductase chain 4L/K|NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like GO:0016651|GO:0042773|GO:0055114 MF_01456|PF00420 Alide2_4021 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001516|IPR001750|IPR003945|IPR018393 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal|NADH-plastoquinone oxidoreductase, chain 5|NADH-plastoquinone oxidoreductase, chain 5 subgroup|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit GO:0008137|GO:0042773|GO:0055114 PF00361|PF00662|PR01434|PR01435|TIGR01974 Alide2_4022 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001750|IPR003918|IPR010227 NADH-quinone oxidoreductase, chain M/4|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit|NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PF00361|PR01437|TIGR01972 Alide2_4023 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001750|IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit GO:0008137|GO:0042773|GO:0055114 MF_00445|PF00361|TIGR01770 Alide2_4024 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016768 Uncharacterised conserved protein UCP019883, membrane PF10993|PIRSF019883 Alide2_4025 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009562 Protein of unknown function DUF1178 PF06676|PIRSF032131 Alide2_4027 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006095|IPR006096|IPR006097|IPR014362|IPR033524|IPR036291 Glutamate dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal|Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain|Leu/Phe/Val dehydrogenases active site|NAD(P)-binding domain superfamily GO:0006520|GO:0016491|GO:0016639|GO:0055114 G3DSA:1.10.285.10|G3DSA:3.40.50.10860|G3DSA:3.40.50.720|PF00208|PF02812|PIRSF000185|PR00082|PS00074|SM00839|SSF51735|SSF53223 Alide2_4028 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002099|IPR013507|IPR014721|IPR014762|IPR014790|IPR020568|IPR020667|IPR036890|IPR037198 DNA mismatch repair protein family, N-terminal|DNA mismatch repair protein, S5 domain 2-like|DNA mismatch repair protein, MutL|DNA mismatch repair, conserved site|Histidine kinase/HSP90-like ATPase superfamily|MutL, C-terminal domain superfamily|MutL, C-terminal, dimerisation|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0005524|GO:0006298|GO:0030983 G3DSA:2.30.42.20|G3DSA:3.30.1370.100|G3DSA:3.30.230.10|G3DSA:3.30.565.10|MF_00149|PF01119|PF08676|PF13589|PS00058|SM00853|SM01340|SSF118116|SSF54211|SSF55874|TIGR00585 Alide2_4029 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008816 Glycine zipper 2TM domain GO:0019867 PF05433 Alide2_4030 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032816 SNARE associated Golgi protein PF09335 Alide2_4031 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR011059|IPR014311|IPR032466 Amidohydrolase-related|Guanine deaminase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain superfamily GO:0006147|GO:0008270|GO:0008892|GO:0016787|GO:0016810 G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|SSF51338|SSF51556|TIGR02967 Alide2_4032 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006043|IPR026033 Purine permease PbuG-like|Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 PF00860|PIRSF005353 Alide2_4033 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_4034 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000674|IPR008274|IPR014309|IPR036856|IPR037165 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead|Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily|Xanthine dehydrogenase, molybdopterin binding subunit GO:0016491|GO:0030151|GO:0055114 G3DSA:3.30.365.10|G3DSA:3.90.1170.50|PF01315|PF02738|SM01008|SSF54665|SSF56003|TIGR02965 Alide2_4035 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002346|IPR002888|IPR005107|IPR006058|IPR012175|IPR012675|IPR014307|IPR016167|IPR016169|IPR036010|IPR036318|IPR036683|IPR036884 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|Beta-grasp domain superfamily|CO dehydrogenase flavoprotein, C-terminal|CO dehydrogenase flavoprotein, C-terminal domain superfamily|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Molybdopterin dehydrogenase, FAD-binding|Xanthine dehydrogenase, small subunit|Xanthine dehydrogenase, small subunit, bacteria|[2Fe-2S]-binding|[2Fe-2S]-binding domain superfamily GO:0004854|GO:0004855|GO:0009055|GO:0016491|GO:0046872|GO:0050660|GO:0051536|GO:0051537|GO:0055114 G3DSA:1.10.150.120|G3DSA:3.10.20.30|G3DSA:3.30.390.50|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF00941|PF01799|PF03450|PIRSF036557|PS00197|SM01092|SSF47741|SSF54292|SSF55447|SSF56176|TIGR02963 Alide2_4036 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011051|IPR013096|IPR014710 Cupin 2, conserved barrel|RmlC-like cupin domain superfamily|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF07883|SSF51182 Alide2_4037 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002508|IPR021731 AMIN domain|N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 G3DSA:2.60.40.3500|G3DSA:3.40.630.40|PF01520|PF11741|SM00646|SSF53187 Alide2_4038 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003442|IPR027417 P-loop containing nucleoside triphosphate hydrolase|tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 G3DSA:3.40.50.300|PF02367|SSF52540|TIGR00150 Alide2_4039 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004453|IPR013542|IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Domain of unknown function DUF1730|Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 PF08331|PF13484|PS00198|SSF54862|TIGR00276 Alide2_4040 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004776 Membrane transport protein GO:0016021|GO:0055085 PF03547 Alide2_4041 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4042 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR011932|IPR013762|IPR023009 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC/XerD|Tyrosine recombinase XerD GO:0003677|GO:0006310|GO:0009009|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01807|MF_01808|PF00589|PF02899|SSF47823|SSF56349|TIGR02225 Alide2_4043 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013216|IPR029063 Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|PF08241|SSF53335 Alide2_4044 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002817|IPR025747|IPR037509|IPR038521 Phosphomethylpyrimidine synthase|Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B|ThiC-associated domain|ThiC/Bza superfamily GO:0009228|GO:0016830|GO:0051536 G3DSA:3.20.20.540|MF_00089|PF01964|PF13667|TIGR00190 Alide2_4046 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004463|IPR011334|IPR015870|IPR020568 Ribosomal protein S5 domain 2-type fold|UDP-3-O-acyl N-acetylglucosamine deacetylase|UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal|UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 G3DSA:3.30.1700.10|G3DSA:3.30.230.20|MF_00388|PF03331|SSF54211|TIGR00325 Alide2_4047 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF09339|SM00346|SSF46785|SSF55781 Alide2_4048 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007325|IPR037175 Kynurenine formamidase superfamily|Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 G3DSA:3.50.30.50|PF04199|SSF102198 Alide2_4049 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|G3DSA:3.40.50.980|PF00501|PF13193|SSF56801 Alide2_4050 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_4051 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_4052 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4053 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|SSF47203|SSF56645 Alide2_4054 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000158|IPR003008|IPR008280|IPR018316|IPR020805|IPR024757|IPR036525 Cell division protein FtsZ|Cell division protein FtsZ, C-terminal|Cell division protein FtsZ, conserved site|Tubulin/FtsZ, 2-layer sandwich domain|Tubulin/FtsZ, C-terminal|Tubulin/FtsZ, GTPase domain|Tubulin/FtsZ, GTPase domain superfamily GO:0003924|GO:0005525|GO:0005737 G3DSA:3.40.50.1440|MF_00909|PF00091|PF12327|PR00423|PS01135|SM00864|SM00865|SSF52490|SSF55307|TIGR00065 Alide2_4055 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003494|IPR018181|IPR020823 Cell division protein FtsA|Heat shock protein 70, conserved site|SHS2 domain inserted in FtsA GO:0005515|GO:0051301 G3DSA:3.30.1490.110|G3DSA:3.30.420.40|G3DSA:3.90.640.10|MF_02033|PF02491|PF14450|PIRSF003101|PS01036|SM00842|SSF53067|TIGR01174 Alide2_4056 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005548|IPR013685|IPR026579 Cell division protein FtsQ|Cell division protein FtsQ/DivIB|POTRA domain, FtsQ-type GO:0090529 G3DSA:3.10.20.310|G3DSA:3.40.50.11690|MF_00911|PF03799|PF08478 Alide2_4057 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000291|IPR005905|IPR011095|IPR011127|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|D-alanine--D-alanine ligase|D-alanine--D-alanine ligase, C-terminal|D-alanine--D-alanine ligase, N-terminal domain|D-alanine--D-alanine ligase/VANA/B/C, conserved site|Pre-ATP-grasp domain superfamily GO:0005524|GO:0005737|GO:0008716 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00047|PF01820|PF07478|PIRSF039102|PS00843|PS00844|SSF52440|SSF56059|TIGR01205 Alide2_4058 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000713|IPR004101|IPR005758|IPR013221|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Mur-like, catalytic domain superfamily|UDP-N-acetylmuramate--L-alanine ligase GO:0005524|GO:0008763|GO:0009058|GO:0009252|GO:0016874 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00046|PF01225|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01082 Alide2_4059 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004276|IPR006009|IPR007235 Glycosyl transferase, family 28, C-terminal|Glycosyltransferase family 28, N-terminal domain|N-acetylglucosaminyltransferase, MurG GO:0005975|GO:0016758|GO:0030259|GO:0050511 G3DSA:3.40.50.2000|MF_00033|PF03033|PF04101|SSF53756|TIGR01133 Alide2_4060 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001182|IPR013437 Probable peptidoglycan glycosyltransferase FtsW|Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0009252|GO:0016021|GO:0051301 MF_00913|PF01098|TIGR02614 Alide2_4061 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004101|IPR005762|IPR013221|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, central|Mur-like, catalytic domain superfamily|UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0009058|GO:0016874|GO:0051301 G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00639|PF02875|PF08245|SSF51984|SSF53244|SSF53623|TIGR01087 Alide2_4062 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000715|IPR003524|IPR018480 Glycosyl transferase, family 4|Phospho-N-acetylmuramoyl-pentapeptide transferase|Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site GO:0008963|GO:0016020|GO:0016021 MF_00038|PF00953|PF10555|PS01347|PS01348|TIGR00445 Alide2_4063 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000713|IPR004101|IPR005863|IPR013221|IPR035911|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Mur-like, catalytic domain superfamily|MurE/MurF, N-terminal|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0009058|GO:0016874|GO:0047480|GO:0071555 G3DSA:3.40.1190.10|G3DSA:3.40.1390.10|G3DSA:3.90.190.20|MF_02019|PF01225|PF02875|PF08245|SSF53244|SSF53623|SSF63418|TIGR01143 Alide2_4064 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000713|IPR004101|IPR005761|IPR013221|IPR035911|IPR036565|IPR036615 Mur ligase, C-terminal|Mur ligase, C-terminal domain superfamily|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Mur-like, catalytic domain superfamily|MurE/MurF, N-terminal|UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0009058|GO:0016874|GO:0016881|GO:0051301 G3DSA:3.40.1190.10|G3DSA:3.40.1390.10|G3DSA:3.90.190.20|MF_00208|PF01225|PF02875|PF08245|SSF53244|SSF53623|SSF63418|TIGR01085 Alide2_4065 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001460|IPR005311|IPR012338|IPR036138|IPR037532 Beta-lactamase/transpeptidase-like|Penicillin-binding protein, dimerisation domain|Penicillin-binding protein, dimerisation domain superfamily|Penicillin-binding protein, transpeptidase|Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 G3DSA:3.30.450.330|G3DSA:3.40.710.10|G3DSA:3.90.1310.30|MF_02080|PF00905|PF03717|SSF56519|SSF56601 Alide2_4066 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 MF_00910|PF04999|TIGR02209 Alide2_4067 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002903|IPR023397|IPR029063 Ribosomal RNA small subunit methyltransferase H|S-adenosyl-L-methionine-dependent methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 G3DSA:1.10.150.170|G3DSA:3.40.50.150|MF_01007|PF01795|PIRSF004486|SSF53335|SSF81799|TIGR00006 Alide2_4068 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003444|IPR020603|IPR037914|IPR038619 MraZ domain|MraZ superfamily|SpoVT-AbrB domain superfamily|Transcriptional regulator MraZ GO:0003700|GO:0006355 G3DSA:2.40.330.20|MF_01008|PD006745|PF02381|SSF89447|TIGR00242 Alide2_4069 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR003959|IPR004491|IPR019489|IPR027417 AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Heat shock protein HslU|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 G3DSA:1.10.8.60|MF_00249|PF00004|PF07724|PF10431|SM00382|SM01086|SSF52540|TIGR00390 Alide2_4070 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001353|IPR022281|IPR029055 ATP-dependent protease, HslV subunit|Nucleophile aminohydrolases, N-terminal|Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0006508|GO:0009376|GO:0051603 G3DSA:3.60.20.10|MF_00248|PF00227|PIRSF039093|SSF56235|TIGR03692 Alide2_4071 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002645 STAS domain PF13466 Alide2_4072 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000962|IPR012784|IPR020458|IPR037187 DksA, N-terminal domain superfamily|RNA polymerase-binding transcription factor DksA|Zinc finger, DksA/TraR C4-type|Zinc finger, DksA/TraR C4-type conserved site GO:0008270 G3DSA:1.20.120.910|MF_00926|PF01258|PS01102|SSF109635|SSF57716|TIGR02420 Alide2_4073 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003495|IPR011629|IPR027417|IPR036627 CobW-like, C-terminal domain superfamily|CobW/HypB/UreG, nucleotide-binding domain|Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.30.1220.10|G3DSA:3.40.50.300|PF02492|PF07683|SM00833|SSF52540|SSF90002 Alide2_4074 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021111|IPR038125 HTHP domain superfamily|Hexameric tyrosine-coordinated heme protein (HTHP) G3DSA:1.10.150.500|PF11534 Alide2_4075 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR011006|IPR036641 CheY-like superfamily|HPT domain superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:1.20.120.160|G3DSA:3.40.50.2300|PF00072|SM00448|SSF47226|SSF52172 Alide2_4076 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR009061|IPR010093|IPR011006 CheY-like superfamily|Putative DNA-binding domain superfamily|Signal transduction response regulator, receiver domain|SinI-like, DNA-binding domain GO:0000160|GO:0003677 G3DSA:1.10.1660.10|G3DSA:3.40.50.2300|PF00072|PF12728|SM00448|SSF46955|SSF52172|TIGR01764 Alide2_4077 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.12740|PF00072|SM00448|SSF52172 Alide2_4078 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR003594|IPR003661|IPR004358|IPR013656|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain|PAS domain superfamily|PAS fold-4|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF08448|PR00344|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229 Alide2_4079 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR009061|IPR010093|IPR011006 CheY-like superfamily|Putative DNA-binding domain superfamily|Signal transduction response regulator, receiver domain|SinI-like, DNA-binding domain GO:0000160|GO:0003677 G3DSA:1.10.1660.10|G3DSA:3.40.50.2300|PF00072|PF12728|SM00448|SSF46955|SSF52172|TIGR01764 Alide2_4080 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.12740|PF00072|SM00448|SSF52172 Alide2_4081 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003607 HD/PDEase domain G3DSA:1.10.3210.10|PF13487|SM00471|SSF109604 Alide2_4082 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR003594|IPR003661|IPR004358|IPR013656|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain|PAS domain superfamily|PAS fold-4|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF08448|PR00344|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229 Alide2_4083 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|SM00387|SM00388|SSF47384|SSF55874 Alide2_4084 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003660|IPR004089|IPR004090|IPR024478 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF00672|PF12729|PR00260|SM00283|SM00304|SSF58104 Alide2_4085 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762|IPR023009 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC/XerD GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01808|PF00589|PF02899|SSF56349 Alide2_4086 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007435|IPR029016 GAF-like domain superfamily|Protein of unknown function DUF484 G3DSA:3.30.450.40|PF04340 Alide2_4087 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001653|IPR018510 Diaminopimelate epimerase, DapF|Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 G3DSA:3.10.310.10|MF_00197|PF01678|PS01326|SSF54506|TIGR00652 Alide2_4088 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001279|IPR015797|IPR036388|IPR036866 Metallo-beta-lactamase|NUDIX hydrolase-like domain superfamily|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like|Winged helix-like DNA-binding domain superfamily GO:0016787 G3DSA:1.10.10.10|G3DSA:3.60.15.10|G3DSA:3.90.79.10|PF00753|SM00849|SSF55811|SSF56281 Alide2_4089 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002942|IPR020103|IPR036986 Pseudouridine synthase, catalytic domain superfamily|RNA-binding S4 domain|RNA-binding S4 domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 G3DSA:3.10.290.10|G3DSA:3.30.2350.10|PF01479|SM00363|SSF55120|SSF55174 Alide2_4091 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001216|IPR001926|IPR005856|IPR005859|IPR036052 Cysteine synthase|Cysteine synthase CysK|Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site|Pyridoxal-phosphate dependent enzyme|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0004124|GO:0006535 G3DSA:3.40.50.1100|PF00291|PS00901|SSF53686|TIGR01136|TIGR01139 Alide2_4092 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036869 Chaperone J-domain superfamily G3DSA:1.10.287.110|SSF46565 Alide2_4093 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028348|IPR036188 FAD dependent protein|FAD/NAD(P)-binding domain superfamily G3DSA:3.30.70.2700|G3DSA:3.50.50.60|PIRSF038984|SSF51905 Alide2_4094 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR029032 AhpD-like|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118 Alide2_4095 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_4096 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005000|IPR011206|IPR015813 Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 G3DSA:3.20.20.60|PF03328|PIRSF015582|SSF51621 Alide2_4097 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4098 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_4099 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 Alide2_4100 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4101 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000835|IPR023187|IPR036388|IPR036390 MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12802|PS01117|SM00347|SSF46785 Alide2_4102 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR017619|IPR020904|IPR036291 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SM00822|SSF51735|TIGR03206 Alide2_4103 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR010198|IPR014748|IPR017623|IPR018376|IPR029045 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB|2-ketocyclohexanecarboxyl-CoA hydrolase|ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008935|GO:0009234 G3DSA:1.10.12.10|G3DSA:3.90.226.10|MF_01934|PF00378|PS00166|SSF52096|TIGR03210 Alide2_4104 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR017620|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain|Cyclohexanecarboxyl-CoA dehydrogenase GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645|TIGR03207 Alide2_4105 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR017621|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Cyclohexanecarboxylate-CoA ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801|TIGR03208 Alide2_4106 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035 DHS-like NAD/FAD-binding domain superfamily|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055|GO:0050660 G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|SM00893|SSF52402|SSF52467 Alide2_4107 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000049|IPR012255|IPR014729|IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold GO:0009055 G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|SM00893|SSF52402 Alide2_4108 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 Alide2_4109 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4110 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_4111 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 Alide2_4112 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_4113 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_4114 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|SSF47203|SSF56645 Alide2_4115 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|SSF53901|TIGR01930 Alide2_4116 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR006108|IPR006176|IPR008927|IPR018376|IPR029045|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site|NAD(P)-binding domain superfamily GO:0003824|GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.50|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|PS00166|SSF48179|SSF51735|SSF52096 Alide2_4117 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_4118 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR010921|IPR036388 Transposase IS3/IS911family|Trp repressor/replication initiator|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313|GO:0043565 G3DSA:1.10.10.10|PF01527|SSF48295 Alide2_4119 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_4120 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_4122 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024447 YXWGXW repeat PF12779 Alide2_4123 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001915|IPR022919 Peptidase M48|Peptidase M48, protease HtpX, putative GO:0004222|GO:0006508 G3DSA:3.30.2010.10|MF_00188|PF01435 Alide2_4124 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021390 Protein of unknown function DUF3025 PF11227 Alide2_4125 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002195|IPR004721|IPR006680|IPR032466 Amidohydrolase-related|Dihydroorotase homodimeric type|Dihydroorotase, conserved site|Metal-dependent hydrolase GO:0004151|GO:0016787|GO:0016812|GO:0019856 G3DSA:3.20.20.140|MF_00219|PF01979|PIRSF001237|PS00482|PS00483|SSF51556|TIGR00856 Alide2_4127 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007438 Protein of unknown function DUF488 PF04343 Alide2_4128 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR004675|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118|TIGR00778 Alide2_4129 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR004602|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|P-loop containing nucleoside triphosphate hydrolase|UvrABC system subunit A GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 G3DSA:1.10.8.280|G3DSA:1.20.1580.10|G3DSA:3.30.190.20|G3DSA:3.40.50.300|PS00211|SM00382|SSF52540|TIGR00630 Alide2_4130 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000709|IPR028081|IPR028082 Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I GO:0006865 G3DSA:3.40.50.2300|PF13458|PR00337|SSF53822 Alide2_4132 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023614 Porin domain superfamily G3DSA:2.40.160.10|PF13609|SSF56935 Alide2_4133 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005828|IPR005829|IPR036259 MFS transporter superfamily|Major facilitator, sugar transporter-like|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1250.20|PF00083|PS00217|SSF103473 Alide2_4134 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007436 Protein of unknown function DUF485 PF04341 Alide2_4135 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001734|IPR018212|IPR038377 Sodium/glucose symporter superfamily|Sodium/solute symporter|Sodium/solute symporter, conserved site GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1730.10|PF00474|PS00456|TIGR00813 Alide2_4136 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012337|IPR013520|IPR036397 Exonuclease, RNase T/DNA polymerase III|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676 G3DSA:3.30.420.10|PF00929|SM00479|SSF53098 Alide2_4137 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644|IPR005105|IPR014710|IPR018490|IPR018821 CBS domain|Cyclic nucleotide-binding-like|Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding|Protein-PII uridylyltransferase, N-terminal|RmlC-like jelly roll fold GO:0008773 G3DSA:2.60.120.10|G3DSA:3.10.580.10|PF00571|PF03445|PF10335|SM00116|SSF51206|SSF54631 Alide2_4138 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001853|IPR014440|IPR036249 DSBA-like thioredoxin domain|HCCA isomerase/glutathione S-transferase kappa|Thioredoxin-like superfamily GO:0015035 G3DSA:3.40.30.10|PF01323|PIRSF006386|SSF52833 Alide2_4139 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010710 Protein of unknown function DUF1289 PF06945 Alide2_4140 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007214|IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain|YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 G3DSA:3.90.960.10|PF04073|SSF55826 Alide2_4141 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000138|IPR000891|IPR013785 Aldolase-type TIM barrel|Hydroxymethylglutaryl-CoA lyase, active site|Pyruvate carboxyltransferase GO:0003824|GO:0004419 G3DSA:3.20.20.70|PF00682|PS01062|SSF51569 Alide2_4142 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006140|IPR036291 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|NAD(P)-binding domain superfamily GO:0051287|GO:0055114 G3DSA:3.40.50.720|PF02826|SSF51735 Alide2_4143 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR001882|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR016185 Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin-binding site|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif|Single hybrid motif GO:0005524 G3DSA:2.40.50.100|G3DSA:3.30.470.130|PF00289|PF00364|PF02785|PF02786|PS00188|PS00866|PS00867|SM00878|SSF51230|SSF51246|SSF52440|SSF56059 Alide2_4144 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025196 Domain of unknown function DUF4126 PF13548 Alide2_4145 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_4146 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029045|IPR034733 Acetyl-CoA carboxylase|ClpP/crotonase-like domain superfamily G3DSA:3.90.226.10|PF01039|SSF52096 Alide2_4147 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_4148 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR018060|IPR032687 DNA binding HTH domain, AraC-type|HTH-type transcriptional regulator AraC-type, N-terminal|Homeobox-like domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0043565 G3DSA:1.10.10.60|PF12625|PF12833|SM00342|SSF46689 Alide2_4149 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13417|PF14497|SSF47616|SSF52833 Alide2_4150 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000172|IPR007867|IPR012132|IPR027424|IPR036188 FAD/NAD(P)-binding domain superfamily|Glucose Oxidase, domain 2|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 G3DSA:1.10.1220.110|G3DSA:3.30.410.40|G3DSA:3.50.50.60|G3DSA:4.10.450.10|PF00732|PF05199|PIRSF000137|PS00623|PS00624|SSF51905|SSF54373 Alide2_4151 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_4152 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_4153 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851|IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter, permease|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016020|GO:0016887|GO:0022857|GO:0055085 G3DSA:3.40.50.300|PF00005|PF02653|PF12399|SM00382|SSF52540 Alide2_4154 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030660 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|High-affinity branched-chain amino acid transport ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0015658|GO:0015803|GO:0016887 G3DSA:3.40.50.300|PF00005|PIRSF039137|PS00211|SM00382|SSF52540 Alide2_4155 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000172|IPR007867|IPR012132|IPR027424|IPR036188 FAD/NAD(P)-binding domain superfamily|Glucose Oxidase, domain 2|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 G3DSA:1.10.1220.110|G3DSA:3.30.410.40|G3DSA:3.50.50.60|G3DSA:4.10.450.10|PF00732|PF05199|PIRSF000137|PS00623|PS00624|SSF51905|SSF54373 Alide2_4156 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_4157 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR004839|IPR015421|IPR015422|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 Alide2_4158 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002202|IPR004553|IPR009023|IPR009029|IPR023074|IPR023076 Hydroxymethylglutaryl-CoA reductase, bacterial-type|Hydroxymethylglutaryl-CoA reductase, class I/II|Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily|Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily|Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site|Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily GO:0004420|GO:0015936|GO:0016616|GO:0050662|GO:0055114 G3DSA:1.10.8.660|G3DSA:3.30.70.420|G3DSA:3.90.770.10|PF00368|PR00071|PS00066|PS00318|PS01192|SSF55035|SSF56542|TIGR00532 Alide2_4159 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006439|IPR023198|IPR023214|IPR036412 HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase-like, domain 2 GO:0016787 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|SSF56784|TIGR01509 Alide2_4160 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR013655|IPR029787|IPR035965 GGDEF domain|Nucleotide cyclase|PAS domain|PAS domain superfamily|PAS fold-3 GO:0005515 G3DSA:2.10.70.100|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF08447|SM00267|SSF55073|SSF55785|TIGR00229|TIGR00254 Alide2_4161 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|SSF53850 Alide2_4162 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016181 Acyl-CoA N-acyltransferase G3DSA:3.40.630.30|SSF55729 Alide2_4163 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR001633|IPR011623|IPR029787|IPR035919|IPR035965 7TM-DISM receptor, extracellular domain, type 1|EAL domain|EAL domain superfamily|GGDEF domain|Nucleotide cyclase|PAS domain superfamily G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF07695|SM00052|SM00267|SSF141868|SSF55073|SSF55785|TIGR00254 Alide2_4164 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023006|IPR032710 NTF2-like domain superfamily|Uncharacterised protein family UPF0225 G3DSA:3.10.450.50|MF_00612|SSF54427 Alide2_4165 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025245 Protein of unknown function DUF4197 PF13852 Alide2_4166 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007353|IPR023090 Protein of unknown function DUF421|UPF0702, alpha/beta domain superfamily G3DSA:3.30.240.20|PF04239 Alide2_4167 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF09339|SSF46785|SSF55781 Alide2_4168 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005320|IPR029062 Class I glutamine amidotransferase-like|Peptidase S51 GO:0006508|GO:0008236 G3DSA:3.40.50.880|PF03575|SSF52317 Alide2_4169 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009561 Protein of unknown function DUF1177 PF06675 Alide2_4170 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010843 Uncharacterised protein family AroM PD037589|PF07302 Alide2_4171 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4174 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00073|SSF47203|SSF56645 Alide2_4175 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF00106|PR00081|SSF51735 Alide2_4176 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020610|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00099|SSF53901|TIGR01930 Alide2_4177 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 MF_00747|PD043552|PF06315|PIRSF000719 Alide2_4178 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001765|IPR015892|IPR036874 Carbonic anhydrase|Carbonic anhydrase superfamily|Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 G3DSA:3.40.1050.10|PF00484|PS00704|PS00705|SM00947|SSF53056 Alide2_4179 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 Alide2_4180 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000551|IPR009061 MerR-type HTH domain|Putative DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.1660.10|PF13411|SM00422|SSF46955 Alide2_4181 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032524|IPR032781|IPR037118 AAA+ ATPase domain|ABC transporter Uup, C-terminal|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase|Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0003677|GO:0004832|GO:0005524|GO:0005737|GO:0006438|GO:0016887 G3DSA:1.10.287.380|G3DSA:3.40.50.300|PF00005|PF12848|PF16326|PS00211|SM00382|SSF52540 Alide2_4182 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000673|IPR001789|IPR008248|IPR011006|IPR035909 CheY-like superfamily|Methylesterase CheB, C-terminal|Signal transduction response regulator, chemotaxis, CheB|Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase|Signal transduction response regulator, receiver domain GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 G3DSA:3.40.50.180|G3DSA:3.40.50.2300|MF_00099|PF00072|PF01339|PIRSF000876|SM00448|SSF52172|SSF52738 Alide2_4183 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005659|IPR011324|IPR038592 CheD-like superfamily|Chemoreceptor glutamine deamidase CheD|Cytotoxic necrotizing factor-like, catalytic GO:0006935|GO:0050568 G3DSA:3.30.1330.200|MF_01440|PF03975|SSF64438 Alide2_4184 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000780|IPR022641|IPR022642|IPR026024|IPR029063|IPR036804 Chemotaxis protein methyltransferase CheR|Chemotaxis receptor methyltransferase CheR, N-terminal|Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily|MCP methyltransferase, CheR-type|MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal|S-adenosyl-L-methionine-dependent methyltransferase GO:0008757 G3DSA:1.10.155.10|G3DSA:3.40.50.150|PF01739|PF03705|PIRSF000410|PR00996|SM00138|SSF47757|SSF53335 Alide2_4185 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002545|IPR036061 CheW-like domain|CheW-like domain superfamily GO:0006935|GO:0007165 G3DSA:2.30.30.40|G3DSA:2.40.50.180|PF01584|SM00260|SSF50341 Alide2_4186 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002545|IPR003594|IPR004105|IPR004358|IPR008207|IPR036061|IPR036097|IPR036641|IPR036890|IPR037006 CheW-like domain|CheW-like domain superfamily|HPT domain superfamily|Histidine kinase CheA-like, homodimeric domain|Histidine kinase CheA-like, homodimeric domain superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.560|G3DSA:1.20.120.160|G3DSA:2.30.30.40|G3DSA:2.40.50.180|G3DSA:3.30.565.10|PF01584|PF01627|PF02518|PF02895|PR00344|SM00073|SM00260|SM00387|SM01231|SSF47226|SSF47384|SSF50341|SSF55874 Alide2_4187 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.12740|PF00072|SM00448|SSF52172 Alide2_4189 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR003594|IPR011006|IPR011712|IPR036890 CheY-like superfamily|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain|Signal transduction response regulator, receiver domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF02518|PF07730|SM00387|SM00448|SSF52172|SSF55874 Alide2_4190 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal GO:0000160|GO:0003677|GO:0006355 G3DSA:3.40.50.12740|PF00072|PF00196|PR00038|SM00421|SM00448|SSF46894|SSF52172 Alide2_4191 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002010|IPR006303 Flagellar biosynthesis protein FliR|Type III secretion system inner membrane R protein GO:0006605|GO:0016020|GO:0016021|GO:0044780 PF01311|PR00953|TIGR01400 Alide2_4192 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002191|IPR006305 Bacterial export protein family 3|Flagellar biosynthesis protein FliQ GO:0009306|GO:0016020|GO:0016021|GO:0044780 PF01313|PIRSF004669|PR00952|TIGR01402 Alide2_4193 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005837|IPR005838 Flagellar transport protein FliP|Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PF00813|PR00951|PR01302|PS01060|PS01061|TIGR01103 Alide2_4194 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 PF04347 Alide2_4195 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001172|IPR001543|IPR012826|IPR036429 Flagellar motor switch FliN|Flagellar motor switch FliN/Type III secretion HrcQb|SpoA-like superfamily|Surface presentation of antigen (SpoA) GO:0003774|GO:0006935|GO:0009288|GO:0009425|GO:0016020|GO:0071973 G3DSA:2.30.330.10|PF01052|PR00956|SSF101801|TIGR02480 Alide2_4196 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001543|IPR001689|IPR028976|IPR036429 CheC-like superfamily|Flagellar motor switch protein FliM|SpoA-like superfamily|Surface presentation of antigen (SpoA) GO:0003774|GO:0009425|GO:0071973 G3DSA:2.30.330.10|G3DSA:3.40.1550.10|PF01052|PF02154|PIRSF002888|PR00955|SSF101801|SSF103039|TIGR01397 Alide2_4197 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 PF03748 Alide2_4198 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021136|IPR038610 Flagellar hook-length control protein-like, C-terminal|FliK-like, C-terminal domain superfamily G3DSA:3.30.750.140|PF02120 Alide2_4199 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 PF02050|TIGR02473 Alide2_4200 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000194|IPR003593|IPR004100|IPR005714|IPR020003|IPR020005|IPR027417 AAA+ ATPase domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|ATPase, type III secretion system, FliI/YscN|Flagellar export ATPase FliI, clade 1|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257|GO:0044780|GO:0046034|GO:0071973|GO:1902600 G3DSA:3.40.50.12240|PF00006|PF02874|PS00152|SM00382|SSF52540|TIGR01026|TIGR03496 Alide2_4201 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE PF02108 Alide2_4202 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000090|IPR011002|IPR023087|IPR028263|IPR032779 Flagellar motor switch protein FliG|Flagellar motor switch protein FliG, C-terminal|Flagellar motor switch protein FliG, N-terminal domain|Flagellar motor switch protein FliG, alpha-helical|Flagellar motor switch protein FliG, middle domain GO:0003774|GO:0006935|GO:0009288|GO:0071973 G3DSA:1.10.220.30|PF01706|PF14841|PF14842|PIRSF003161|PR00954|SSF48029|TIGR00207 Alide2_4203 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000067|IPR006182|IPR013556 Flagellar M-ring C-terminal|Flagellar M-ring protein FliF|Secretory protein YscJ/FliF GO:0003774|GO:0009431|GO:0071973 G3DSA:3.30.300.30|PF01514|PF08345|PIRSF004862|PR01009|TIGR00206 Alide2_4204 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 MF_00724|PF02049|PR01006|TIGR00205 Alide2_4205 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008622 Flagellar protein FliT G3DSA:1.20.58.380|PF05400 Alide2_4206 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003713|IPR036584 Flagellar protein FliS|Flagellar protein FliS superfamily GO:0044780 G3DSA:1.20.120.340|PF02561|PIRSF039090|SSF101116|TIGR00208 Alide2_4207 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003481|IPR010809|IPR010810 Flagellar hook-associated protein 2, C-terminal|Flagellar hook-associated protein 2, N-terminal|Flagellin hook, IN motif GO:0006928|GO:0007155|GO:0009288|GO:0009424|GO:0044781 PF02465|PF07195|PF07196 Alide2_4208 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001029|IPR001492|IPR010810 Flagellin|Flagellin hook, IN motif|Flagellin, D0/D1 domain GO:0005198|GO:0006928|GO:0009288|GO:0009420|GO:0044781|GO:0071973 G3DSA:1.20.1330.10|G3DSA:1.20.58.1830|G3DSA:2.170.280.10|G3DSA:2.30.220.10|PF00669|PF00700|PF07196|PR00207|SSF64518 Alide2_4209 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001029|IPR001492|IPR010810 Flagellin|Flagellin hook, IN motif|Flagellin, D0/D1 domain GO:0005198|GO:0006928|GO:0009288|GO:0009420|GO:0044781|GO:0071973 G3DSA:1.20.1330.10|G3DSA:1.20.58.1830|G3DSA:2.170.280.10|G3DSA:2.30.220.10|PF00669|PF00700|PF07196|PR00207|SSF64518 Alide2_4210 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001173|IPR007833|IPR029044|IPR032719 Capsule polysaccharide biosynthesis|Glycosyltransferase 2-like|Glycosyltransferase WbsX|Nucleotide-diphospho-sugar transferases GO:0000271|GO:0015774 G3DSA:3.20.20.80|G3DSA:3.40.50.2000|G3DSA:3.90.550.10|PF00535|PF05159|PF14307|SSF53448|SSF53756 Alide2_4211 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003329|IPR005493|IPR029044|IPR036704 Acylneuraminate cytidylyltransferase|Nucleotide-diphospho-sugar transferases|Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.100|G3DSA:3.90.550.10|PF02348|PF03737|SSF53448|SSF89562 Alide2_4212 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000540|IPR002898|IPR022522 Flagellar motor protein MotA, conserved site|Flagellar motor stator, MotA|MotA/TolQ/ExbB proton channel PF01618|PS01307|TIGR03818 Alide2_4213 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006665|IPR025713|IPR036737 Motility protein B, N-terminal domain|OmpA-like domain|OmpA-like domain superfamily G3DSA:3.30.1330.60|PF00691|PF13677|SSF103088 Alide2_4214 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR011006 CheY-like superfamily|Signal transduction response regulator, receiver domain GO:0000160 G3DSA:3.40.50.12740|PF00072|SM00448|SSF52172 Alide2_4215 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 G3DSA:1.10.287.500|PF04344|PIRSF002884|SSF75708 Alide2_4216 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006135|IPR029025 Type III secretion system substrate exporter|Type III secretion system substrate exporter, C-terminal GO:0009306|GO:0016020 G3DSA:3.40.1690.10|PF01312|PR00950|SSF160544 Alide2_4217 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001712|IPR006301 Flagellar biosynthesis protein FlhA|Type III secretion system FHIPEP GO:0009306|GO:0016020|GO:0016021|GO:0044780 G3DSA:1.10.490.80|G3DSA:1.10.8.540|G3DSA:3.40.30.60|PF00771|PIRSF005419|PR00949|TIGR01398 Alide2_4218 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000897|IPR003593|IPR020006|IPR027417 AAA+ ATPase domain|Flagellar biosynthesis protein FlhF|P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle, SRP54 subunit, GTPase domain GO:0003924|GO:0005525|GO:0006614|GO:0044781 G3DSA:1.20.120.1380|G3DSA:3.40.50.300|PF00448|SM00382|SM00962|SSF52540|TIGR03499 Alide2_4219 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.40.50.300 Alide2_4220 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000943|IPR007624|IPR007627|IPR007630|IPR012845|IPR013324|IPR013325|IPR014284|IPR028617 RNA polymerase sigma factor FliA|RNA polymerase sigma factor, FliA/WhiG|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4-like|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 G3DSA:1.10.1740.10|G3DSA:1.20.140.160|MF_00962|PF04539|PF04542|PF04545|PIRSF000770|PR00046|PS00716|SSF88659|SSF88946|TIGR02479|TIGR02937 Alide2_4222 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007412|IPR031316|IPR035890 Anti-sigma-28 factor FlgM superfamily|Anti-sigma-28 factor FlgM, C-terminal|Anti-sigma-28 factor, FlgM GO:0045892 PF04316|SSF101498|TIGR03824 Alide2_4223 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013974|IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal|SAF domain G3DSA:2.30.30.760|PF13144|SM00858|TIGR03170 Alide2_4224 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001444|IPR006300|IPR019776 Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 PF00460|PIRSF002889|PS00588|TIGR01396 Alide2_4225 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001444|IPR006299|IPR010930 Flagellar basal body rod protein, N-terminal|Flagellar basal-body rod protein FlgC|Flagellar basal-body/hook protein, C-terminal domain GO:0030694|GO:0071973 PF00460|PF06429|TIGR01395 Alide2_4226 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005648|IPR025963|IPR025965 Flagellar hook capping protein|FlgD Ig-like domain|FlgD Tudor-like domain G3DSA:2.30.30.910|G3DSA:2.60.40.4070|PF03963|PF13860|PF13861 Alide2_4227 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001444|IPR010930|IPR011491|IPR020013|IPR037058|IPR037925 Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook protein FlgE|Flagellar hook protein FlgE superfamily|Flagellar hook-basal body protein, FlgE/F/G|Flagellar hook-basal body protein, FlgE/F/G-like GO:0071973 G3DSA:2.60.98.20|PF00460|PF06429|PF07559|SSF117143|TIGR03506 Alide2_4228 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001444|IPR010930|IPR012836|IPR019776|IPR020013|IPR037925 Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod FlgF|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook-basal body protein, FlgE/F/G|Flagellar hook-basal body protein, FlgE/F/G-like GO:0030694|GO:0071973 PF00460|PF06429|PS00588|SSF117143|TIGR02490|TIGR03506 Alide2_4229 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001444|IPR010930|IPR012834|IPR020013|IPR037925 Flagellar basal body rod protein, N-terminal|Flagellar basal-body rod FlgG|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook-basal body protein, FlgE/F/G|Flagellar hook-basal body protein, FlgE/F/G-like GO:0009426|GO:0071973 PF00460|PF06429|SSF117143|TIGR02488|TIGR03506 Alide2_4230 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 MF_00415|PF02107|PR01008 Alide2_4231 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 MF_00416|PF02119|PR01010 Alide2_4232 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002901|IPR013377|IPR019301 Flagellar protein FlgJ, N-terminal|Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain|Peptidoglycan hydrolase FlgJ GO:0004040|GO:0016798|GO:0044780 G3DSA:1.10.530.10|G3DSA:2.10.70.40|PF01832|PF10135|PR01002|SM00047|TIGR02541 Alide2_4233 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001444|IPR002371|IPR010930 Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780|GO:0071973 PF00460|PF06429|PR01005|SSF64518|TIGR02492 Alide2_4234 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001029|IPR013384 Flagellar hook-associated protein 3|Flagellin, D0/D1 domain GO:0005198|GO:0009424|GO:0071973 G3DSA:1.20.1330.10|PF00669|SSF64518|TIGR02550 Alide2_4235 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013976 Metal-dependent hydrolase HDOD G3DSA:1.10.3210.10|PF08668|SSF109604 Alide2_4236 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004136|IPR013785 Aldolase-type TIM barrel|Nitronate monooxygenase GO:0003824|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|SSF51412 Alide2_4237 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR004839|IPR015421|IPR015422|IPR015424|IPR036388|IPR036390 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170 G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|SM00345|SSF46785|SSF53383 Alide2_4238 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810 Alide2_4239 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_4240 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004839|IPR015421|IPR015422|IPR015424 Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0009058|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383 Alide2_4241 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 G3DSA:3.10.310.10|PF02567|PIRSF016184|SSF54506|TIGR00654 Alide2_4242 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000634|IPR001926|IPR036052 Pyridoxal-phosphate dependent enzyme|Serine/threonine dehydratase, pyridoxal-phosphate-binding site|Tryptophan synthase beta subunit-like PLP-dependent enzyme GO:0006520|GO:0030170 G3DSA:3.40.50.1100|PF00291|PS00165|SSF53686 Alide2_4243 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007325|IPR037175 Kynurenine formamidase superfamily|Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 G3DSA:3.50.30.50|PF04199|SSF102198 Alide2_4244 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_4245 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001509|IPR036291 NAD(P)-binding domain superfamily|NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 G3DSA:3.40.50.720|PF01370|SSF51735 Alide2_4246 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013078|IPR029033 Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1 G3DSA:3.40.50.1240|PF00300|SM00855|SSF53254 Alide2_4247 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 Alide2_4248 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012533|IPR038507 YcnI-like|YcnI-like superfamily G3DSA:2.60.40.2230|PF07987 Alide2_4249 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000531|IPR012910|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel G3DSA:2.170.130.10|PF00593|PF07715|SSF56935 Alide2_4251 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003785|IPR024087 Creatininase-like superfamily|Creatininase/formamide hydrolase G3DSA:3.40.50.10310|PF02633|SSF102215 Alide2_4252 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064|IPR019546 Bordetella uptake gene|Twin-arginine translocation pathway, signal sequence, bacterial/archaeal GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850|TIGR01409 Alide2_4253 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003834|IPR017937|IPR028250|IPR036249 Cytochrome C biogenesis protein, transmembrane domain|Thiol:disulfide interchange protein DsbD, N-terminal domain|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0016020|GO:0017004|GO:0045454|GO:0055114 G3DSA:3.40.30.10|PF02683|PF11412|PF13899|PS00194|SSF52833 Alide2_4254 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000866|IPR036249 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Thioredoxin-like superfamily GO:0016209|GO:0016491|GO:0055114 G3DSA:3.40.30.10|PF00578|SSF52833 Alide2_4255 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002781 Transmembrane protein TauE-like GO:0016021 PF01925 Alide2_4256 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002477|IPR005490|IPR036365|IPR036366|IPR038063 L,D-transpeptidase catalytic domain|L,D-transpeptidase catalytic domain-like|PGBD superfamily|PGBD-like superfamily|Peptidoglycan binding-like GO:0016740 G3DSA:1.10.101.10|G3DSA:2.40.440.10|PF01471|PF03734|SSF141523|SSF47090 Alide2_4257 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000257|IPR006361|IPR038071 UROD/MetE-like superfamily|Uroporphyrinogen decarboxylase (URO-D)|Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 G3DSA:3.20.20.210|MF_00218|PF01208|PS00906|PS00907|SSF51726|TIGR01464 Alide2_4258 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001650|IPR005259|IPR011545|IPR014001|IPR027417 DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Primosomal protein N' GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006260|GO:0032508 G3DSA:1.10.8.630|G3DSA:3.40.50.300|MF_00983|PF00270|PF00271|SM00487|SM00490|SSF52540|TIGR00595 Alide2_4259 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020610|IPR020615|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|SSF53901|TIGR01930 Alide2_4260 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR014748|IPR018376|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase, C-terminal|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|SSF52096 Alide2_4261 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845 AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.40.50.12780|PF00501|PS00455|SSF56801 Alide2_4262 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_4263 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_4264 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_4265 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_4266 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|SM00382|SSF52540 Alide2_4267 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR023772|IPR036271 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|PS01081|SSF46689|SSF48498 Alide2_4268 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004776 Membrane transport protein GO:0016021|GO:0055085 PF03547 Alide2_4269 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005752|IPR013986|IPR014017|IPR027417|IPR034739 ATP-dependent DNA helicase Rep|DExx box DNA helicase domain superfamily|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD/AddA helicase, N-terminal GO:0003677|GO:0004003|GO:0005524|GO:0006268|GO:0016787 G3DSA:1.10.10.160|G3DSA:1.10.486.10|G3DSA:3.40.50.300|MF_01920|PF00580|PF13361|SSF52540 Alide2_4271 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003187|IPR036541 Phospholipase A1|Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 G3DSA:2.40.230.10|PF02253|PR01486|SSF56931 Alide2_4272 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005532|IPR016187 C-type lectin fold|Sulfatase-modifying factor enzyme G3DSA:3.90.1580.10|PF03781|SSF56436 Alide2_4273 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000917|IPR017849|IPR017850|IPR024607 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Sulfatase, N-terminal|Sulfatase, conserved site GO:0003824|GO:0008484 G3DSA:3.30.1120.10|G3DSA:3.40.720.10|PF00884|PS00149|SSF53649 Alide2_4274 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 Alide2_4275 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002938|IPR036188 FAD-binding domain|FAD/NAD(P)-binding domain superfamily GO:0071949 G3DSA:3.30.9.50|G3DSA:3.40.30.120|G3DSA:3.50.50.60|PF01494|PR00420|SSF51905 Alide2_4276 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011234|IPR036663 Fumarylacetoacetase-like, C-terminal|Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 G3DSA:3.90.850.10|PF01557|SSF56529 Alide2_4277 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002299|IPR023614 Porin domain superfamily|Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 G3DSA:2.40.160.10|PF13609|PR00184|SSF56935 Alide2_4278 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008 Alide2_4280 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006015|IPR006016|IPR014729 Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA G3DSA:3.40.50.620|PF00582|PR01438|SSF52402 Alide2_4281 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002616|IPR004803|IPR036511 Queuine tRNA-ribosyltransferase-like|tRNA-guanine transglycosylase|tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0016763|GO:0101030 G3DSA:3.20.20.105|MF_00168|PF01702|SSF51713|TIGR00430|TIGR00449 Alide2_4283 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR001610|IPR013767|IPR035965 PAC motif|PAS domain|PAS domain superfamily|PAS fold GO:0006355 G3DSA:3.30.450.20|PF00989|SM00086|SM00091|SSF55785|TIGR00229 Alide2_4284 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006115|IPR008927|IPR013328|IPR036291 6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily GO:0016491|GO:0050661|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|SSF48179|SSF51735 Alide2_4285 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4286 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4287 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005493|IPR036704 Ribonuclease E inhibitor RraA/RraA-like protein|Ribonuclease E inhibitor RraA/RraA-like superfamily G3DSA:3.50.30.100|PF03737|SSF89562 Alide2_4288 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 Alide2_4289 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002123|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Phospholipid/glycerol acyltransferase GO:0016021|GO:0016746|GO:0055085 G3DSA:1.20.1250.20|PF01553|PF07690|SM00563|SSF103473|SSF69593 Alide2_4290 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000642|IPR003593|IPR003959|IPR003960|IPR005936|IPR011546|IPR027417|IPR037219 AAA+ ATPase domain|ATPase, AAA-type, conserved site|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase|Peptidase M41|Peptidase M41, FtsH extracellular|Peptidase M41-like|Peptidase, FtsH GO:0004222|GO:0005524|GO:0006508|GO:0008270|GO:0016020|GO:0016021 G3DSA:1.10.8.60|G3DSA:1.20.58.760|G3DSA:3.40.50.300|MF_01458|PF00004|PF01434|PF06480|PS00674|SM00382|SSF140990|SSF52540|TIGR01241 Alide2_4291 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.40.50.2020|PF00156|SSF53271 Alide2_4292 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR029057 Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0009116 G3DSA:3.30.1310.20|PF00156|SSF53271 Alide2_4293 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029058 Alpha/Beta hydrolase fold G3DSA:3.40.50.1820|SSF53474 Alide2_4294 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011032|IPR013154|IPR014187|IPR036291 Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-binding type 2|GroES-like superfamily|NAD(P)-binding domain superfamily GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF08240|SSF50129|SSF51735|TIGR02822 Alide2_4295 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4296 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025700|IPR036188 FAD/NAD(P)-binding domain superfamily|L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase G3DSA:3.50.50.60|PF13434|PR00368|PR00411|SSF51905 Alide2_4297 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR004675|IPR010195|IPR029032 AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like|Uncharacterised peroxidase-related GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118|TIGR00778|TIGR01926 Alide2_4298 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013702|IPR019494 FIST domain, N-terminal|FIST, C-domain PF08495|PF10442|SM00897|SM01204 Alide2_4300 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000119|IPR010992 Histone-like DNA-binding protein|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|SM00411|SSF47729 Alide2_4301 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016130|IPR026893|IPR029021 Protein-tyrosine phosphatase, active site|Protein-tyrosine phosphatase-like|Tyrosine/serine-protein phosphatase IphP-type GO:0004725|GO:0016311 G3DSA:3.90.190.10|PF13350|PS00383|SSF52799 Alide2_4303 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012893|IPR017508 HipA, N-terminal subdomain 1|HipA-like, C-terminal G3DSA:1.10.1070.20|PF07804|PF13657|TIGR03071 Alide2_4304 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001387|IPR010982|IPR017507 Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain superfamily|Transcription regulator, HipB-like GO:0003677|GO:0043565 G3DSA:1.10.260.40|PF13560|SM00530|SSF47413|TIGR03070 Alide2_4307 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009057|IPR038717 Homeobox-like domain superfamily|Tc1-like transposase, DDE domain GO:0003677 PF13358|PF13565|SSF46689 Alide2_4309 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002559|IPR012337|IPR024473 Ribonuclease H-like superfamily|Transposase, IS4, N-terminal|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|PF13006|SSF53098 Alide2_4310 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR038717 Tc1-like transposase, DDE domain PF13358|PF13551 Alide2_4311 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025737 MetA-pathway of phenol degradation, putative PF13557 Alide2_4312 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SSF51735 Alide2_4313 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_4314 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_4315 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584 Integrase, catalytic core GO:0015074 PF00665 Alide2_4316 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002611|IPR003593|IPR027417|IPR028350 AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase GO:0005524 G3DSA:3.40.50.300|PF01695|PIRSF003073|SM00382|SSF52540 Alide2_4317 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002327|IPR036909 Cytochrome c, class IA/ IB|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PR00604|SSF46626 Alide2_4318 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003953|IPR027477|IPR036188 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily G3DSA:3.50.50.60|G3DSA:3.90.700.10|PF00890|SSF51905|SSF56425 Alide2_4319 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010419|IPR023393 Carbon monoxide dehydrogenase subunit G|START-like domain superfamily G3DSA:3.30.530.20|PF06240|SSF55961 Alide2_4320 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000674|IPR008274|IPR036856|IPR037165 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead|Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.365.10|G3DSA:3.90.1170.50|PF01315|PF02738|SM01008|SSF54665|SSF56003 Alide2_4321 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001041|IPR002888|IPR006058|IPR012675|IPR036010|IPR036884 2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-like superfamily|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain superfamily|[2Fe-2S]-binding|[2Fe-2S]-binding domain superfamily GO:0009055|GO:0016491|GO:0046872|GO:0051536|GO:0051537|GO:0055114 G3DSA:1.10.150.120|G3DSA:3.10.20.30|PF00111|PF01799|PS00197|SSF47741|SSF54292 Alide2_4322 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002346|IPR005107|IPR016167|IPR016169|IPR036318|IPR036683 CO dehydrogenase flavoprotein, C-terminal|CO dehydrogenase flavoprotein, C-terminal domain superfamily|FAD-binding, type PCMH, subdomain 1|FAD-binding, type PCMH, subdomain 2|FAD-binding, type PCMH-like superfamily|Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0050660|GO:0055114 G3DSA:3.30.390.50|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF00941|PF03450|SM01092|SSF55447|SSF56176 Alide2_4323 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000383|IPR029058 Alpha/Beta hydrolase fold|Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 G3DSA:1.10.10.800|G3DSA:3.40.50.1820|PF02129|SSF53474 Alide2_4324 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR011704|IPR027417 AAA+ ATPase domain|ATPase, dynein-related, AAA domain|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF07728|SM00382|SSF52540 Alide2_4326 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010419|IPR023393 Carbon monoxide dehydrogenase subunit G|START-like domain superfamily G3DSA:3.30.530.20|PF06240|SSF55961 Alide2_4327 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003777|IPR027051 XdhC Rossmann domain|XdhC- CoxI G3DSA:3.40.50.720|PF02625|PF13478 Alide2_4328 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025877|IPR029044 MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF12804|SSF53448 Alide2_4331 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR036271 DNA-binding HTH domain, TetR-type|Homeobox-like domain superfamily|Tetracyclin repressor-like, C-terminal domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|SSF46689|SSF48498 Alide2_4332 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082 Alide2_4333 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000383|IPR029058 Alpha/Beta hydrolase fold|Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 G3DSA:1.10.10.800|G3DSA:3.40.50.1820|PF02129|SSF53474 Alide2_4334 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006091|IPR009075|IPR009100|IPR013786|IPR025878|IPR036250|IPR037069 Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12806|SSF47203|SSF56645 Alide2_4335 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR006108|IPR006176|IPR008927|IPR018376|IPR029045|IPR036291 3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase|Enoyl-CoA hydratase/isomerase, conserved site|NAD(P)-binding domain superfamily GO:0003824|GO:0003857|GO:0006631|GO:0016491|GO:0055114 G3DSA:1.10.1040.50|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|PS00166|SSF48179|SSF51735|SSF52096 Alide2_4336 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020613|IPR020616|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, conserved site|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00737|SSF53901|TIGR01930 Alide2_4337 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|SSF51735 Alide2_4338 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|SSF56801 Alide2_4339 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_4340 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_4341 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_4342 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025997|IPR028082 Periplasmic binding protein|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13407|SSF53822 Alide2_4344 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002559|IPR012337 Ribonuclease H-like superfamily|Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PF01609|SSF53098 Alide2_4348 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.443.10|PF00589|SSF56349 Alide2_4349 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002104|IPR004107|IPR010998|IPR011010|IPR013762 DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain superfamily|Integrase/recombinase, N-terminal GO:0003677|GO:0006310|GO:0015074 G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF02899|SSF56349 Alide2_4350 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007069|IPR026889 Transposase zinc-binding domain|Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 PF04986|PF14319 Alide2_4351 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000456|IPR036373 Ribosomal protein L17|Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.90.1030.10|MF_01368|PF01196|PS01167|SSF64263|TIGR00059 Alide2_4352 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011260|IPR011262|IPR011263|IPR011773|IPR036603|IPR036643 DNA-directed RNA polymerase, RpoA/D/Rpb3-type|DNA-directed RNA polymerase, alpha subunit|DNA-directed RNA polymerase, insert domain|DNA-directed RNA polymerase, insert domain superfamily|RNA polymerase, RBP11-like subunit|RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351|GO:0046983 G3DSA:1.10.150.20|G3DSA:2.170.120.12|G3DSA:3.30.1360.10|MF_00059|PD001179|PF01000|PF01193|PF03118|SM00662|SSF47789|SSF55257|SSF56553|TIGR02027 Alide2_4353 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001912|IPR002942|IPR005709|IPR018079|IPR036986 RNA-binding S4 domain|RNA-binding S4 domain superfamily|Ribosomal protein S4, bacterial-type|Ribosomal protein S4, conserved site|Ribosomal protein S4/S9, N-terminal GO:0003723|GO:0003735|GO:0005622|GO:0006412|GO:0015935|GO:0019843 G3DSA:1.10.1050.10|G3DSA:3.10.290.10|MF_01306_B|PF00163|PF01479|PS00632|SM00363|SM01390|SSF55174|TIGR01017 Alide2_4354 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001971|IPR018102|IPR019981|IPR036967 Ribosomal S11, conserved site|Ribosomal protein S11|Ribosomal protein S11 superfamily|Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.420.80|MF_01310|PF00411|PIRSF002131|PS00054|SSF53137|TIGR03632 Alide2_4355 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001892|IPR010979|IPR018269|IPR019980|IPR027437 30s ribosomal protein S13, C-terminal|Ribosomal protein S13|Ribosomal protein S13, bacterial-type|Ribosomal protein S13, conserved site|Ribosomal protein S13-like, H2TH GO:0003676|GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:1.10.8.50|G3DSA:4.10.910.10|MF_01315|PF00416|PIRSF002134|PS00646|SSF46946|TIGR03631 Alide2_4356 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000473|IPR035977 Ribosomal protein L36|Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00251|PD002101|PF00444|PS00828|SSF57840|TIGR01022 Alide2_4357 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002208|IPR023201|IPR026593|IPR030659 Protein translocase subunit SecY|SecY conserved site|SecY domain superfamily|SecY/SEC61-alpha family GO:0015031|GO:0016020 G3DSA:1.10.3370.10|MF_01465|PF00344|PIRSF004557|PR00303|PS00755|PS00756|SSF103491|TIGR00967 Alide2_4358 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005749|IPR021131|IPR030878|IPR036227 Ribosomal L18e/L15P superfamily|Ribosomal protein L15|Ribosomal protein L15, bacterial-type|Ribosomal protein L18e/L15P GO:0003735|GO:0006412|GO:0015934 G3DSA:3.100.10.10|MF_01341|PF00828|SSF52080|TIGR01071 Alide2_4359 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005996|IPR016082|IPR036919 Ribosomal protein L30, bacterial-type|Ribosomal protein L30, ferredoxin-like fold domain|Ribosomal protein L30, ferredoxin-like fold domain superfamily GO:0003735|GO:0006412|GO:0015934 G3DSA:3.30.1390.20|MF_01371_B|PF00327|PIRSF002211|SSF55129|TIGR01308 Alide2_4360 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005324|IPR005712|IPR013810|IPR014721|IPR018192|IPR020568 Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S5, C-terminal|Ribosomal protein S5, N-terminal|Ribosomal protein S5, N-terminal, conserved site|Ribosomal protein S5, bacterial-type GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935 G3DSA:3.30.160.20|G3DSA:3.30.230.10|MF_01307_B|PF00333|PF03719|PS00585|SSF54211|SSF54768|TIGR01021 Alide2_4361 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004389|IPR005484 Ribosomal protein L18|Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.420.100|MF_01337_B|PF00861|SSF53137|TIGR00060 Alide2_4362 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000702|IPR002358|IPR019906|IPR020040|IPR036789 Ribosomal protein L6|Ribosomal protein L6, alpha-beta domain|Ribosomal protein L6, alpha-beta domain superfamily|Ribosomal protein L6, bacterial-type|Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 G3DSA:3.90.930.12|MF_01365_B|PF00347|PIRSF002162|PR00059|PS00525|SSF56053|TIGR03654 Alide2_4363 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000630|IPR035987 Ribosomal protein S8|Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 G3DSA:3.30.1370.30|G3DSA:3.30.1490.10|MF_01302_B|PF00410|PS00053|SSF56047 Alide2_4364 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001209|IPR023036 Ribosomal protein S14|Ribosomal protein S14, bacterial/plastid GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:4.10.830.10|MF_00537|PF00253|SSF57716 Alide2_4365 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002132|IPR020929|IPR020930|IPR022803|IPR031309|IPR031310 Ribosomal protein L5|Ribosomal protein L5 domain superfamily|Ribosomal protein L5, C-terminal|Ribosomal protein L5, N-terminal|Ribosomal protein L5, bacterial-type|Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:3.30.1440.10|MF_01333_B|PF00281|PF00673|PIRSF002161|PS00358|SSF55282 Alide2_4366 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003256|IPR005824|IPR005825|IPR008991|IPR014722 KOW|Ribosomal protein L2, domain 2|Ribosomal protein L24|Ribosomal protein L24/L26, conserved site|Translation protein SH3-like domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 G3DSA:2.30.30.30|MF_01326_B|PF00467|PF17136|PS01108|SM00739|SSF50104|TIGR01079 Alide2_4367 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000218|IPR005745|IPR019972|IPR036853 Ribosomal protein L14 superfamily|Ribosomal protein L14P|Ribosomal protein L14P, conserved site|Ribosomal protein L14P, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0015934 G3DSA:2.40.150.20|MF_01367|PF00238|PS00049|SM01374|SSF50193|TIGR01067 Alide2_4368 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000447|IPR006076|IPR031656|IPR036188|IPR038299 Alpha-glycerophosphate oxidase, C-terminal|Alpha-glycerophosphate oxidase, C-terminal domain superfamily|FAD dependent oxidoreductase|FAD-dependent glycerol-3-phosphate dehydrogenase|FAD/NAD(P)-binding domain superfamily GO:0004368|GO:0006072|GO:0009331|GO:0016491|GO:0055114 G3DSA:1.10.8.870|G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PF16901|PR01001|PS00978|SSF51905 Alide2_4369 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001034|IPR014036|IPR018356|IPR036388|IPR036390|IPR037171 DeoR C-terminal sensor domain|DeoR-type HTH domain|NagB/RpiA transferase-like|Transcription regulator, HTH DeoR-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355 G3DSA:1.10.10.10|PF00455|PF08220|PR00037|PS00894|SM00420|SM01134|SSF100950|SSF46785 Alide2_4370 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000577|IPR005999|IPR018483|IPR018484|IPR018485 Carbohydrate kinase, FGGY|Carbohydrate kinase, FGGY, C-terminal|Carbohydrate kinase, FGGY, N-terminal|Carbohydrate kinase, FGGY, conserved site|Glycerol kinase GO:0004370|GO:0005975|GO:0006072|GO:0016773 G3DSA:3.30.420.40|MF_00186|PF00370|PF02782|PIRSF000538|PS00445|PS00933|SSF53067|TIGR01311 Alide2_4371 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000304|IPR008927|IPR028939|IPR029036|IPR036291 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|NAD(P)-binding domain superfamily|Pyrroline-5-carboxylate reductase|Pyrroline-5-carboxylate reductase, catalytic, N-terminal|Pyrroline-5-carboxylate reductase, dimerisation domain GO:0004735|GO:0006561|GO:0055114 G3DSA:1.10.3730.10|G3DSA:3.40.50.720|MF_01925|PF03807|PF14748|PIRSF000193|PS00521|SSF48179|SSF51735|TIGR00112 Alide2_4372 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014867 Spore coat protein CotH PF08757 Alide2_4373 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000537|IPR006370|IPR030470 4-hydroxybenzoate polyprenyltransferase-like|UbiA prenyltransferase conserved site|UbiA prenyltransferase family GO:0004659|GO:0016021|GO:0016765 G3DSA:1.10.357.140|G3DSA:1.20.120.1780|MF_01635|PF01040|PS00943|TIGR01474 Alide2_4375 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002177|IPR008331|IPR009078|IPR012347|IPR023188 DNA-binding protein Dps|DNA-binding protein Dps, conserved site|Ferritin-like|Ferritin-like superfamily|Ferritin/DPS protein domain GO:0006879|GO:0008199|GO:0016722|GO:0055114 G3DSA:1.20.1260.10|PF00210|PIRSF005900|PR01346|PS00819|SSF47240 Alide2_4376 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_4377 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001650|IPR004609|IPR011545|IPR012340|IPR014001|IPR027417|IPR033454 ATP-dependent DNA helicase RecG|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|RecG, wedge domain GO:0003676|GO:0004003|GO:0005524|GO:0006281|GO:0006310 G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00270|PF00271|PF17191|SM00487|SM00490|SSF50249|SSF52540|TIGR00643 Alide2_4378 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003607|IPR006674|IPR006675|IPR021812 HD domain|HD/PDEase domain|HDIG domain|Protein of unknown function DUF3391 G3DSA:1.10.3210.10|PF01966|PF11871|SM00471|SSF109604|TIGR00277 Alide2_4379 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003699|IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA|S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 G3DSA:2.40.10.240|G3DSA:3.40.1780.10|MF_00113|PF02547|SSF111337|TIGR00113 Alide2_4380 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_4381 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029055 Nucleophile aminohydrolases, N-terminal G3DSA:1.10.246.130|G3DSA:3.60.20.40|PF01019|PR01210|SSF56235 Alide2_4382 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4383 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_4384 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002043|IPR005122|IPR018085|IPR036895 Uracil-DNA glycosylase family 1|Uracil-DNA glycosylase, active site|Uracil-DNA glycosylase-like|Uracil-DNA glycosylase-like domain superfamily GO:0004844|GO:0006281|GO:0006284|GO:0016799 G3DSA:3.40.470.10|MF_00148|PF03167|PS00130|SM00986|SM00987|SSF52141|TIGR00628 Alide2_4385 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001468|IPR011060|IPR013785|IPR013798 Aldolase-type TIM barrel|Indole-3-glycerol phosphate synthase|Indole-3-glycerol phosphate synthase, conserved site|Ribulose-phosphate binding barrel GO:0003824|GO:0004425|GO:0006568 G3DSA:3.20.20.70|MF_00134_B|PF00218|PS00614|SSF51366 Alide2_4387 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000312|IPR005940|IPR017459|IPR035902|IPR036320 Anthranilate phosphoribosyl transferase|Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase family 3, N-terminal domain superfamily|Glycosyl transferase, family 3|Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily GO:0000162|GO:0004048|GO:0016757 G3DSA:1.20.970.10|G3DSA:3.40.1030.10|MF_00211|PF00591|PF02885|SSF47648|SSF52418|TIGR01245 Alide2_4388 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006221|IPR017926|IPR029062 Anthranilate synthase/para-aminobenzoate synthase like domain|Class I glutamine amidotransferase-like|Glutamine amidotransferase G3DSA:3.40.50.880|PF00117|PR00096|PR00097|PR00099|SSF52317|TIGR00566 Alide2_4389 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001584|IPR012337|IPR025948|IPR036397 HTH-like domain|Integrase, catalytic core|Ribonuclease H superfamily|Ribonuclease H-like superfamily GO:0003676|GO:0015074 G3DSA:3.30.420.10|PF00665|PF13276|SSF53098 Alide2_4390 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002514|IPR009057|IPR036388 Homeobox-like domain superfamily|Transposase IS3/IS911family|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0004803|GO:0006313 G3DSA:1.10.10.10|PF01527|SSF46689 Alide2_4392 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014914 RES domain PF08808|SM00953 Alide2_4393 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024467 Domain of unknown function DUF2384 PF09722 Alide2_4394 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002701|IPR036263|IPR036979 Chorismate mutase II, prokaryotic-type|Chorismate mutase domain superfamily|Chorismate mutase type II superfamily GO:0046417 G3DSA:1.20.59.10|PF01817|SM00830|SSF48600 Alide2_4395 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005256|IPR005801|IPR006805|IPR015890|IPR019999 ADC synthase|Anthranilate synthase component I, N-terminal|Anthranilate synthase component I, PabB-like|Anthranilate synthase component I-like|Chorismate-utilising enzyme, C-terminal GO:0000162|GO:0004049|GO:0009058 G3DSA:3.60.120.10|PF00425|PF04715|PR00095|SSF56322|TIGR00564 Alide2_4396 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003660|IPR004089|IPR004090|IPR024478 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF00672|PF12729|PR00260|SM00283|SM00304|SSF58104 Alide2_4397 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR001610|IPR001633|IPR003660|IPR013767|IPR029095|IPR029787|IPR035919|IPR035965 EAL domain|EAL domain superfamily|GGDEF domain|HAMP domain|NarX-like, N-terminal|Nucleotide cyclase|PAC motif|PAS domain|PAS domain superfamily|PAS fold GO:0006355|GO:0007165|GO:0016021 G3DSA:1.20.1480.50|G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00672|PF00989|PF00990|PF13426|PF13675|SM00052|SM00086|SM00091|SM00267|SM00304|SSF141868|SSF158472|SSF55073|SSF55785|TIGR00229|TIGR00254 Alide2_4398 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006346|IPR006439|IPR023198|IPR023214|IPR036412|IPR037512 2-phosphoglycolate phosphatase-like, prokaryotic|HAD hydrolase, subfamily IA|HAD superfamily|HAD-like superfamily|Phosphoglycolate phosphatase, prokaryotic|Phosphoglycolate phosphatase-like, domain 2 GO:0005975|GO:0008967|GO:0016787|GO:0016791 G3DSA:1.10.150.240|G3DSA:3.40.50.1000|MF_00495|PF13419|PR00413|SSF56784|TIGR01449|TIGR01509|TIGR01549 Alide2_4400 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000056|IPR011060|IPR013785|IPR026019 Aldolase-type TIM barrel|Ribulose-phosphate 3-epimerase|Ribulose-phosphate 3-epimerase-like|Ribulose-phosphate binding barrel GO:0003824|GO:0004750|GO:0005975|GO:0006098|GO:0016857 G3DSA:3.20.20.70|PF00834|PIRSF001461|PS01085|PS01086|SSF51366|TIGR01163 Alide2_4401 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007474|IPR023065|IPR036767 ApaG domain|ApaG domain superfamily|Uncharacterised protein family ApaG G3DSA:2.60.40.1470|MF_00791|PF04379|SSF110069 Alide2_4402 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011385 Putative site-specific recombinase Gcr PF10136|PIRSF015380 Alide2_4403 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006153|IPR038770 Cation/H+ exchanger|Sodium/solute symporter superfamily GO:0006812|GO:0015299|GO:0016021|GO:0055085 G3DSA:1.20.1530.20|PF00999 Alide2_4404 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006336|IPR011793|IPR014746 Glutamate--cysteine ligase, GCS2|Glutamine synthetase/guanido kinase, catalytic domain|Putative glutamate--cysteine ligase YbdK GO:0003824|GO:0004357|GO:0016879|GO:0042398 G3DSA:3.30.590.20|MF_01609|PF04107|SSF55931|TIGR02050 Alide2_4405 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006283|IPR010918|IPR016188|IPR036676|IPR036921 PurM-like, C-terminal domain|PurM-like, C-terminal domain superfamily|PurM-like, N-terminal domain|PurM-like, N-terminal domain superfamily|Thiamine-monophosphate kinase GO:0009030|GO:0009228 G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_02128|PF00586|PF02769|PIRSF005303|SSF55326|SSF56042|TIGR01379 Alide2_4406 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.260.40 Alide2_4407 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000983|IPR012902|IPR031982 Bacterial general secretion pathway protein G-type pilin|Prokaryotic N-terminal methylation site|Type IV minor pilin ComP GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.700.10|PF07963|PF16732|PR00813|SSF54523|TIGR02532 Alide2_4408 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012902|IPR022346 General secretion pathway, GspH|Prokaryotic N-terminal methylation site GO:0008565|GO:0015627|GO:0015628 G3DSA:3.30.700.10|PF07963|PF12019|PS00409|SSF54523|TIGR02532 Alide2_4410 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012902|IPR032092 Prokaryotic N-terminal methylation site|Type IV Pilus-assembly protein W GO:0043683 PF16074|PS00409 Alide2_4412 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008707|IPR011047|IPR018391 PilC beta-propeller domain|Pyrrolo-quinoline quinone beta-propeller repeat|Quinoprotein alcohol dehydrogenase-like superfamily G3DSA:2.40.128.630|PF05567|SM00564|SSF50998 Alide2_4413 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR023772 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|PS01081|SSF46689 Alide2_4414 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010941|IPR022211|IPR029058 Alpha/Beta hydrolase fold|Poly-beta-hydroxybutyrate polymerase N-terminal|Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 G3DSA:3.40.50.1820|PF07167|PF12551|SSF53474 Alide2_4415 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR014358|IPR036291 Enoyl-[acyl-carrier-protein] reductase (NADH)|NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR GO:0004318|GO:0006633|GO:0055114 G3DSA:3.40.50.720|PF13561|PIRSF000094|PR00081|SSF51735 Alide2_4416 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_4417 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR039562 Membrane fusion protein, biotin-lipoyl like domain G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.50.100|PF13437|PF13533|SSF111369 Alide2_4418 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12698|PS00211|SM00382|SSF52540 Alide2_4419 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic PF12698 Alide2_4420 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002505|IPR002539|IPR029069 HotDog domain superfamily|MaoC-like dehydratase domain|Phosphate acetyl/butaryl transferase GO:0016746 G3DSA:3.10.129.10|G3DSA:3.40.718.10|PF01515|PF01575|SSF53659|SSF54637 Alide2_4421 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000890|IPR004372|IPR023865 Acetate/propionate kinase|Aliphatic acid kinase, short-chain|Aliphatic acid kinase, short-chain, conserved site GO:0005622|GO:0006082|GO:0016301|GO:0016310|GO:0016774 G3DSA:3.30.420.40|MF_00020|PF00871|PIRSF000722|PR00471|PS01075|SSF53067|TIGR00016 Alide2_4422 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007686|IPR026037|IPR036681 PgpA-like superfamily|Phosphatidylglycerophosphatase A|YutG/PgpA domain GO:0006629|GO:0008962 PF04608|PIRSF006162|SSF101307 Alide2_4423 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008136|IPR036653 CinA, C-terminal|CinA-like, C-terminal G3DSA:3.90.950.20|PF02464|SSF142433|TIGR00199 Alide2_4424 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003122|IPR003660|IPR004089|IPR004090 Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor Tar-related, ligand-binding|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF02203|PR00260|SM00283|SM00304|SSF58104 Alide2_4425 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR001633|IPR003122|IPR003660|IPR029787|IPR035919 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding|EAL domain|EAL domain superfamily|GGDEF domain|HAMP domain|Nucleotide cyclase GO:0006935|GO:0007165|GO:0016021 G3DSA:1.20.1480.50|G3DSA:3.20.20.450|G3DSA:3.30.70.270|PF00563|PF00672|PF00990|PF02203|SM00052|SM00267|SM00304|SSF141868|SSF158472|SSF55073|TIGR00254 Alide2_4426 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR005561|IPR008327|IPR011006|IPR036388 ANTAR domain|CheY-like superfamily|Signal transduction response regulator, antiterminator|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003723 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF03861|PIRSF036382|SM00448|SM01012|SSF52172 Alide2_4427 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR011495|IPR035965|IPR036890 Histidine kinase/HSP90-like ATPase superfamily|PAS domain|PAS domain superfamily|Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF07568|PF13426|SSF55785|SSF55874|TIGR00229 Alide2_4428 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004027|IPR011978|IPR036255 SEC-C motif|Uncharacterised protein family UPF0149|YgfB-like superfamily G3DSA:3.10.450.50|PF02810|PF03695|SSF101327|SSF103642 Alide2_4430 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002716|IPR002850|IPR029060 PIN domain|PIN family, putative toxin-antitoxin system toxin component|PIN-like domain superfamily G3DSA:3.40.50.1010|PF13470|SSF88723|TIGR00305 Alide2_4431 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000241|IPR004114|IPR029063 Putative RNA methylase domain|S-adenosyl-L-methionine-dependent methyltransferase|THUMP domain GO:0003723 G3DSA:3.30.2130.30|G3DSA:3.40.50.150|PF01170|PF02926|SM00981|SSF53335 Alide2_4432 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003660|IPR004089|IPR029151|IPR033479 Double Cache domain 1|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain|Periplasmic sensor-like domain superfamily GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|G3DSA:3.30.450.20|PF00015|PF00672|PF02743|SM00283|SM00304|SSF103190|SSF58104 Alide2_4433 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029069 HotDog domain superfamily G3DSA:3.10.129.10|PF13279|SSF54637 Alide2_4434 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000394|IPR007046|IPR007634|IPR038709 RNA polymerase sigma factor 54|RNA polymerase sigma factor 54, DNA-binding|RNA polymerase sigma factor 54, core-binding domain|RNA polymerase sigma-54 factor, core-binding domain superfamily GO:0001216|GO:0003677|GO:0006352|GO:0016987 G3DSA:1.10.10.1330|G3DSA:1.10.10.60|PF00309|PF04552|PF04963|PIRSF000774|PR00045|PS00717|PS00718|TIGR02395 Alide2_4435 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR030921|IPR032823 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|LPS export ABC transporter, ATP-binding protein LptB|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887|GO:0043190|GO:0055085 G3DSA:3.40.50.300|PF00005|PF12399|PS00211|SM00382|SSF52540|TIGR04406 Alide2_4436 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005653|IPR014340 Lipopolysaccharide export system protein LptA|Organic solvent tolerance-like, N-terminal GO:0001530|GO:0015920|GO:0042597 G3DSA:2.60.450.10|MF_01914|PF03968|TIGR03002 Alide2_4437 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001853|IPR023205|IPR036249 DSBA-like thioredoxin domain|Thiol:disulphide interchange protein DsbA/DsbL|Thioredoxin-like superfamily GO:0015035 G3DSA:3.40.30.10|PF01323|PIRSF001488|SSF52833 Alide2_4438 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007730|IPR036680 Sporulation-like domain|Sporulation-like domain superfamily GO:0042834 G3DSA:3.30.70.1070|PF05036|SSF110997 Alide2_4439 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001278|IPR001412|IPR005148|IPR008909|IPR009080|IPR014729|IPR035684|IPR036695 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Arginine-tRNA ligase|Arginyl tRNA synthetase N-terminal domain|Arginyl tRNA synthetase N-terminal domain superfamily|Arginyl-tRNA synthetase, catalytic core domain|DALR anticodon binding|Rossmann-like alpha/beta/alpha sandwich fold GO:0000166|GO:0004812|GO:0004814|GO:0005524|GO:0005737|GO:0006418|GO:0006420 G3DSA:1.10.730.10|G3DSA:3.30.1360.70|G3DSA:3.40.50.620|MF_00123|PF00750|PF03485|PF05746|PR01038|PS00178|SM00836|SM01016|SSF47323|SSF52374|SSF55190|TIGR00456 Alide2_4440 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011690 Phosphate-starvation-induced PsiF repeat PF07769 Alide2_4441 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018706 Protein of unknown function DUF2214, membrane PF09980 Alide2_4442 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001991|IPR018107|IPR023954|IPR036458 C4-dicarboxylate transport protein|Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter superfamily|Sodium:dicarboxylate symporter, conserved site GO:0006835|GO:0015293|GO:0016021 G3DSA:1.10.3860.10|MF_01300|PF00375|PR00173|PS00713|PS00714|SSF118215 Alide2_4443 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR003594|IPR003661|IPR004358|IPR011006|IPR029151|IPR033479|IPR035965|IPR036097|IPR036890 CheY-like superfamily|Double Cache domain 1|Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAS domain superfamily|Periplasmic sensor-like domain superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain GO:0000155|GO:0000160|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF00512|PF02518|PF02743|PF12860|PR00344|SM00387|SM00388|SM00448|SSF103190|SSF47384|SSF52172|SSF55785|SSF55874 Alide2_4444 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal GO:0000160|GO:0003677|GO:0006355 G3DSA:3.40.50.12740|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 Alide2_4445 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_4446 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001465|IPR006253|IPR011076|IPR023310 Malate synthase|Malate synthase G|Malate synthase G, beta sub-domain|Malate synthase-like superfamily GO:0003824|GO:0004474|GO:0006097 G3DSA:1.20.1220.12|G3DSA:2.170.170.11|G3DSA:3.20.20.360|MF_00641|PF01274|SSF51645|TIGR01345 Alide2_4447 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032720 Cysteine-rich CWC PF14375 Alide2_4448 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004370|IPR014347|IPR018191 4-oxalocrotonate tautomerase|4-oxalocrotonate tautomerase, Pseudomonas-type|Tautomerase/MIF superfamily GO:0006725|GO:0016853 G3DSA:3.30.429.10|PF01361|SSF55331|TIGR00013 Alide2_4449 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003748 Protein of unknown function DUF169 PF02596 Alide2_4450 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026869|IPR029055 Nucleophile aminohydrolases, N-terminal|Putative glutamine amidotransferase type 2 G3DSA:3.60.20.10|PF13230|SSF56235 Alide2_4451 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004215|IPR004218|IPR006284|IPR013815|IPR016185 ATP-grasp fold, subdomain 1|Glutathione synthetase, prokaryotic|Pre-ATP-grasp domain superfamily|Prokaryotic glutathione synthetase, ATP-binding|Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0005524|GO:0005829|GO:0006750 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00162|PF02951|PF02955|SSF52440|SSF56059|TIGR01380 Alide2_4452 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PF03594|TIGR00843 Alide2_4453 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003855|IPR023051 Potassium transporter|Potassium uptake protein, low affinity, Kup GO:0015079|GO:0016020|GO:0071805 MF_01522|PF02705 Alide2_4454 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011718 Glutamate--cysteine ligase GshA G3DSA:3.40.50.11280|PF08886|TIGR02049 Alide2_4455 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003445|IPR004772 Cation transporter|TrkH potassium transport family GO:0006812|GO:0008324|GO:0015379|GO:0016021|GO:0055085|GO:0071805 PF02386|PIRSF006247 Alide2_4456 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003148|IPR006036|IPR006037|IPR036291|IPR036721 NAD(P)-binding domain superfamily|Potassium uptake protein TrkA|Regulator of K+ conductance, C-terminal|Regulator of K+ conductance, C-terminal domain superfamily|Regulator of K+ conductance, N-terminal GO:0005886|GO:0006813|GO:0008324|GO:0015079 G3DSA:3.30.70.1450|G3DSA:3.40.50.720|PF02080|PF02254|PR00335|SSF116726|SSF51735 Alide2_4457 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000965|IPR012134|IPR015590|IPR016161|IPR016162|IPR016163|IPR020593 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde/histidinol dehydrogenase|GPR domain|Gamma-glutamyl phosphate reductase GPR, conserved site|Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0016491|GO:0016620|GO:0050661|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|MF_00412|PF00171|PIRSF000151|PS01223|SSF53720|TIGR00407 Alide2_4459 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:3.30.470.20|SSF56059 Alide2_4460 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001506|IPR006026|IPR024079 Metallopeptidase, catalytic domain superfamily|Peptidase M12A|Peptidase, metallopeptidase GO:0004222|GO:0006508|GO:0008237|GO:0008270 G3DSA:3.40.390.10|PF01400|PR00480|SM00235|SSF55486 Alide2_4462 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005790|IPR008921|IPR010372|IPR027417 DNA polymerase III delta, N-terminal|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|DNA polymerase III, delta subunit|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003887|GO:0006260|GO:0009360 G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF06144|SSF48019|SSF52540|TIGR01128 Alide2_4463 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 G3DSA:3.30.160.150|MF_01186|PF04390 Alide2_4464 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001412|IPR002300|IPR002302|IPR009008|IPR009080|IPR013155|IPR014729|IPR015413|IPR025709 Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Aminoacyl-tRNA synthetase, class Ia, anticodon-binding|Leucine-tRNA ligase|Leucyl-tRNA synthetase, editing domain|Methionyl/Leucyl tRNA synthetase|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0000166|GO:0002161|GO:0004812|GO:0004823|GO:0005524|GO:0006418|GO:0006429 G3DSA:1.10.730.10|G3DSA:3.10.20.590|G3DSA:3.10.330.110|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_00049_B|PF00133|PF08264|PF09334|PF13603|PR00985|PS00178|SSF47323|SSF50677|SSF52374|TIGR00396 Alide2_4465 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006685|IPR010920 LSM domain superfamily|Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PF00924|SSF50182 Alide2_4466 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720 Alide2_4468 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002078|IPR002197|IPR003018|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417|IPR029016 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|GAF domain|GAF-like domain superfamily|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site GO:0003677|GO:0005515|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF01590|PF02954|PS00675|PS00676|PS00688|SM00382|SSF46689|SSF52540|SSF55781 Alide2_4469 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009056|IPR030991|IPR036909 Cytochrome c-550 PedF|Cytochrome c-like domain|Cytochrome c-like domain superfamily GO:0009055|GO:0020037 G3DSA:1.10.760.10|PF13442|SSF46626|TIGR04494 Alide2_4470 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR000160|IPR001610|IPR001633|IPR003018|IPR012226|IPR013767|IPR029016|IPR029787|IPR035919|IPR035965 Diguanylate cyclase/phosphodiesterase|EAL domain|EAL domain superfamily|GAF domain|GAF-like domain superfamily|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS domain superfamily|PAS fold GO:0005515|GO:0006355 G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.450.40|G3DSA:3.30.70.270|PF00563|PF00989|PF00990|PF13185|PIRSF005925|SM00052|SM00065|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55781|SSF55785|TIGR00229|TIGR00254 Alide2_4471 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 G3DSA:3.30.420.270|PF02472 Alide2_4472 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002898 MotA/TolQ/ExbB proton channel PF01618 Alide2_4473 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000846|IPR022663|IPR022664|IPR023940|IPR036291 Dihydrodipicolinate reductase|Dihydrodipicolinate reductase, C-terminal|Dihydrodipicolinate reductase, N-terminal|Dihydrodipicolinate reductase, conserved site|NAD(P)-binding domain superfamily GO:0008839|GO:0009089|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_00102|PF01113|PF05173|PIRSF000161|PS01298|SSF51735|SSF55347|TIGR00036 Alide2_4474 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007450|IPR026592|IPR037873 BamE-like|Lipoprotein SmpA/OmlA|Outer membrane protein assembly factor BamE GO:0019867 G3DSA:3.30.1450.10|MF_00925|PF04355 Alide2_4475 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002481|IPR036388|IPR036390 Ferric-uptake regulator|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.1490.190|PF01475|SSF46785 Alide2_4476 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003755|IPR011104|IPR011126|IPR028979 HPr kinase/phosphorylase, C-terminal|HPr(Ser) kinase/phosphorylase|HPr(Ser) kinase/phosphorylase, N-terminal|HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 G3DSA:3.40.1390.20|G3DSA:3.40.50.300|MF_01249|PF02603|PF07475|SSF53795|SSF75138|TIGR00679 Alide2_4477 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002178|IPR016152 PTS EIIA type-2 domain|Phosphotransferase/anion transporter G3DSA:3.40.930.10|PF00359|PS00372|SSF55804 Alide2_4478 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003489|IPR036567 Ribosome hibernation promoting factor/RaiA|Ribosome hibernation promotion factor-like GO:0044238 G3DSA:3.30.160.100|PF02482|SSF69754|TIGR00741 Alide2_4479 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001636|IPR018236|IPR028923 Phosphoribosylaminoimidazole-succinocarboxamide synthase|SAICAR synthetase, conserved site|SAICAR synthetase/ADE2, N-terminal GO:0004639|GO:0006164 G3DSA:3.30.200.20|G3DSA:3.30.470.20|MF_00137|PF01259|PS01057|PS01058|SSF56104|TIGR00081 Alide2_4480 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005746|IPR011990|IPR013766|IPR017937|IPR036249 Tetratricopeptide-like helical domain superfamily|Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like superfamily GO:0005515|GO:0006662|GO:0015035|GO:0045454 G3DSA:1.25.40.10|G3DSA:3.40.30.10|PF00085|PF14559|PF14561|PR00421|PS00194|SSF48452|SSF52833|TIGR01068 Alide2_4481 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000031|IPR024694|IPR033747|IPR035893 Class I PurE|PurE domain|PurE domain superfamily|PurE, prokaryotic type GO:0006189 G3DSA:3.40.50.7700|MF_01929|PF00731|PIRSF001338|SM01001|SSF52255|TIGR01162 Alide2_4482 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003135|IPR005875|IPR011054|IPR013815|IPR016185 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type|ATP-grasp fold, subdomain 1|Phosphoribosylaminoimidazole carboxylase, ATPase subunit|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif GO:0004638|GO:0005524|GO:0006189 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_01928|PF02222|SSF51246|SSF52440|SSF56059|TIGR01161 Alide2_4483 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005145|IPR006070|IPR010923|IPR017945|IPR038385 DHBP synthase RibB-like alpha/beta domain superfamily|Putative GTP-binding controlling metal-binding domain|Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily|YrdC-like domain|tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 GO:0003725 G3DSA:3.40.50.11030|G3DSA:3.90.870.10|PF01300|PF03481|PIRSF004930|SSF55821|TIGR00057 Alide2_4484 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001087|IPR036514 GDSL lipase/esterase|SGNH hydrolase superfamily GO:0016788 G3DSA:3.40.50.1110|PF00657|SSF52266 Alide2_4485 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005618|IPR011250 Outer membrane protein, OmpW|Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0019867 G3DSA:2.40.160.20|PF03922|SSF56925 Alide2_4486 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005152|IPR029058 Alpha/Beta hydrolase fold|Lipase, secreted GO:0004806|GO:0016042 G3DSA:3.40.50.1820|PIRSF029171|SSF53474 Alide2_4487 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000667|IPR012338 Beta-lactamase/transpeptidase-like|Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 G3DSA:3.40.710.10|G3DSA:3.50.80.20|PF02113|PR00922|SSF56601|TIGR00666 Alide2_4488 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000905|IPR022496 Gcp-like domain|tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 G3DSA:3.30.420.40|PF00814|SSF53067|TIGR03725 Alide2_4489 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000182|IPR006464|IPR016181 Acyl-CoA N-acyltransferase|GNAT domain|N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 G3DSA:3.40.630.30|PF00583|SSF55729|TIGR01575 Alide2_4490 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005122|IPR036895 Uracil-DNA glycosylase-like|Uracil-DNA glycosylase-like domain superfamily G3DSA:3.40.470.10|PF03167|SSF52141 Alide2_4491 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002523|IPR004488 Magnesium/cobalt transport protein CorA|Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020|GO:0030001|GO:0046873|GO:0055085 G3DSA:1.20.58.340|PF01544|SSF143865|SSF144083|TIGR00383 Alide2_4494 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000845|IPR035994 Nucleoside phosphorylase domain|Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 G3DSA:3.40.50.1580|PF01048|SSF53167 Alide2_4495 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|PS00455|SSF56801 Alide2_4496 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012136|IPR029035|IPR034300 DHS-like NAD/FAD-binding domain superfamily|NADP transhydrogenase beta-like domain|NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 G3DSA:3.40.50.1220|PF02233|PIRSF000204|SSF52467 Alide2_4497 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007698|IPR007886|IPR024605|IPR026255|IPR036291 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain|NAD(P) transhydrogenase, alpha subunit|NAD(P) transhydrogenase, alpha subunit, C-terminal|NAD(P)-binding domain superfamily GO:0008746|GO:0055114|GO:1902600 G3DSA:3.40.50.720|PF01262|PF05222|PF12769|PIRSF000203|SM01002|SM01003|SSF51735|SSF52283|TIGR00561 Alide2_4499 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000771|IPR006412|IPR013785 Aldolase-type TIM barrel|Fructose-bisphosphate aldolase, class II, Calvin cycle subtype|Fructose-bisphosphate aldolase, class-II GO:0003824|GO:0004332|GO:0005975|GO:0006096|GO:0008270|GO:0016832 G3DSA:3.20.20.70|PF01116|PIRSF001359|PS00602|PS00806|SSF51569|TIGR00167|TIGR01521 Alide2_4500 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001697|IPR011037|IPR015793|IPR015795|IPR015806|IPR015813|IPR036918 Pyruvate kinase|Pyruvate kinase, C-terminal|Pyruvate kinase, C-terminal domain superfamily|Pyruvate kinase, barrel|Pyruvate kinase, insert domain superfamily|Pyruvate kinase-like, insert domain superfamily|Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0000287|GO:0003824|GO:0004743|GO:0006096|GO:0030955 G3DSA:2.40.33.10|G3DSA:3.20.20.60|G3DSA:3.40.1380.20|PF00224|PF02887|PR01050|SSF50800|SSF51621|SSF52935|TIGR01064 Alide2_4501 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000994|IPR007865|IPR029149|IPR036005 Aminopeptidase P, N-terminal|Creatinase/Aminopeptidase P/Spt16, N-terminal|Creatinase/aminopeptidase-like|Peptidase M24 GO:0004177|GO:0030145 G3DSA:3.40.350.10|G3DSA:3.90.230.10|PF00557|PF05195|SM01011|SSF53092|SSF55920 Alide2_4502 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001753|IPR029045 ClpP/crotonase-like domain superfamily|Enoyl-CoA hydratase/isomerase GO:0003824 G3DSA:3.90.226.10|PF00378|SSF52096 Alide2_4503 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4504 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_4505 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020617 Thiolase|Thiolase, C-terminal|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF02803|PIRSF000429|SSF53901 Alide2_4506 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002878|IPR012340|IPR022002 Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold G3DSA:1.10.12.20|PF01796|PF12172|SSF50249 Alide2_4507 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4508 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_4509 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025877|IPR029044 MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases G3DSA:3.90.550.10|PF12804|SSF53448 Alide2_4510 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005474|IPR005475|IPR005478|IPR009014|IPR029061|IPR033248 Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase, bacterial-like|Transketolase-like, pyrimidine-binding domain GO:0003824|GO:0004802 G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PF02779|PF02780|PS00801|SM00861|SSF52518|SSF52922|TIGR00232 Alide2_4511 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006424|IPR020828|IPR020829|IPR020830|IPR020831|IPR036291 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain|Glyceraldehyde 3-phosphate dehydrogenase, active site|Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain|Glyceraldehyde-3-phosphate dehydrogenase, type I|Glyceraldehyde/Erythrose phosphate dehydrogenase family|NAD(P)-binding domain superfamily GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF00044|PF02800|PIRSF000149|PR00078|PS00071|SM00846|SSF51735|SSF55347|TIGR01534 Alide2_4512 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003489|IPR036567 Ribosome hibernation promoting factor/RaiA|Ribosome hibernation promotion factor-like GO:0044238 PF02482|SSF69754 Alide2_4513 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011697|IPR029062 Class I glutamine amidotransferase-like|Peptidase C26 GO:0016787 G3DSA:3.40.50.880|PF07722|SSF52317 Alide2_4514 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_4515 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006680|IPR032466 Amidohydrolase-related|Metal-dependent hydrolase GO:0016787 G3DSA:3.20.20.140|PF04909|SSF51556 Alide2_4516 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SSF51735 Alide2_4517 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4518 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003779|IPR029032 AhpD-like|Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 G3DSA:1.20.1290.10|PF02627|SSF69118 Alide2_4520 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005625 PepSY-associated TM protein PF03929 Alide2_4521 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000531|IPR010105|IPR012910|IPR036942|IPR037066 TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily|TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01783 Alide2_4522 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:2.40.10.330|G3DSA:3.10.50.40|SSF54534 Alide2_4523 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4525 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010839 Acyclic terpene utilisation PF07287 Alide2_4526 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_4527 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010499|IPR011256|IPR029442 Bacterial transcription activator, effector binding|GyrI-like small molecule binding domain|Regulatory factor, effector binding domain superfamily G3DSA:3.20.80.10|PF06445|SM00871|SSF55136 Alide2_4528 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SSF51735 Alide2_4530 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005636 DTW PF03942|SM01144 Alide2_4531 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_4532 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002155|IPR016039|IPR020616 Thiolase|Thiolase, N-terminal|Thiolase-like GO:0003824|GO:0016747 G3DSA:3.40.47.10|PF00108|PIRSF000429|SSF53901 Alide2_4533 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002878|IPR012340|IPR022002 Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold PF01796|PF12172|SSF50249 Alide2_4534 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4535 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003781|IPR013815|IPR016102|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF56059 Alide2_4536 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR004046|IPR036249|IPR036282 Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|SSF47616|SSF52833 Alide2_4537 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR G3DSA:3.40.50.720|PF13561|PR00080|PR00081|SSF51735 Alide2_4538 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004360|IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain G3DSA:3.10.180.10|PF00903|SSF54593 Alide2_4539 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003121|IPR003601|IPR003602|IPR005738|IPR006171|IPR013497|IPR013824|IPR013825|IPR013826|IPR019835|IPR023405|IPR023406|IPR025589|IPR036885 DNA topoisomerase III|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 1|DNA topoisomerase, type IA, central region, subdomain 2|DNA topoisomerase, type IA, central region, subdomain 3|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|SWIB domain|SWIB/MDM2 domain|SWIB/MDM2 domain superfamily|TOPRIM domain|Topoisomerase C-terminal repeat GO:0003677|GO:0003916|GO:0003917|GO:0005515|GO:0006265 G3DSA:1.10.245.10|G3DSA:1.10.290.10|G3DSA:1.10.460.10|G3DSA:2.70.20.10|G3DSA:3.40.50.140|PF01131|PF01751|PF02201|PF13342|PR00417|PS00396|SM00151|SM00436|SM00437|SM00493|SSF47592|SSF56712|TIGR01056 Alide2_4540 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001214 SET domain GO:0005515 G3DSA:2.170.270.10|PF00856|SM00317|SSF82199 Alide2_4541 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003142|IPR004143|IPR004408 Biotin protein ligase, C-terminal|Biotin--acetyl-CoA-carboxylase ligase|Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0004077|GO:0006464 G3DSA:2.30.30.100|G3DSA:3.30.930.10|PF02237|PF03099|SSF55681|TIGR00121 Alide2_4542 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036680 Sporulation-like domain superfamily GO:0042834 SSF110997 Alide2_4543 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011032|IPR013149|IPR013154|IPR020843|IPR036291 Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735 Alide2_4544 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002539|IPR003965|IPR029069 Fatty acid synthase|HotDog domain superfamily|MaoC-like dehydratase domain GO:0004312|GO:0005835|GO:0006633|GO:0055114 G3DSA:3.10.129.10|PF01575|PR01483|SSF54637 Alide2_4545 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR016709|IPR029069|IPR039569 HotDog domain superfamily|N-terminal of MaoC-like dehydratase|Uncharacterised protein family UPF0336 G3DSA:3.10.129.10|PF13452|PIRSF018072|SSF54637 Alide2_4546 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_4547 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR020845|IPR025110|IPR032387 AMP-binding enzyme, C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetyl-coenzyme A synthetase, N-terminal domain GO:0003824 G3DSA:3.30.300.30|G3DSA:3.40.50.12780|PF00501|PF13193|PF16177|PS00455|SSF56801 Alide2_4548 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000835|IPR023187|IPR036388|IPR036390 MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF12802|PS01117|SM00347|SSF46785 Alide2_4549 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR024467 Domain of unknown function DUF2384 PF09722 Alide2_4550 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014914 RES domain PF08808|SM00953 Alide2_4551 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003421|IPR008927|IPR013328|IPR013332|IPR036291 6-phosphogluconate dehydrogenase, domain 2|6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily|Ketopantoate reductase, N-terminal domain|NAD(P)-binding domain superfamily|Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF02317|PF02558|SSF48179|SSF51735 Alide2_4552 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4553 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR003661|IPR004358|IPR013727|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal GO:0000155|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|SM00387|SM00388|SSF47384|SSF55874 Alide2_4554 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 Alide2_4555 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000192|IPR012703|IPR015421|IPR015422|IPR015424|IPR024169 2-aminoethylphosphonate--pyruvate transaminase|Aminotransferase class V domain|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain|Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase GO:0003824|GO:0019700|GO:0047304 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01376|PF00266|PIRSF000524|SSF53383|TIGR02326|TIGR03301 Alide2_4556 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR017664|IPR035906 2-aminoethylphosphonate ABC transport system, permease protein, putative|ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098|TIGR03262 Alide2_4557 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR008995|IPR017666|IPR017871|IPR027417 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2|AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:2.40.50.140|G3DSA:2.40.50.940|G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF50331|SSF52540|TIGR03265 Alide2_4558 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017663|IPR026045 ABC transport system, 1-aminoethylphosphonate-binding protein, putative|Ferric binding protein G3DSA:3.40.190.10|PF13343|PIRSF002825|SSF53850|TIGR03261 Alide2_4559 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR017723|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Transcription regulator, 2-aminoethylphosphonate utilisation-associated|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008|TIGR03338 Alide2_4560 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002591|IPR012710|IPR017849|IPR017850|IPR023116 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Phosphonoacetate hydrolase|Phosphonoacetate hydrolase, insert domain superfamily|Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824|GO:0047400 G3DSA:3.30.1360.110|G3DSA:3.40.720.10|PF01663|SSF53649|TIGR02335 Alide2_4561 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR017656|IPR029510 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase|Putative phosphonoacetaldehyde dehydrogenase GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|SSF53720|TIGR03250 Alide2_4562 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR017670 Phosphonate degradation operon associated HDIG domain protein G3DSA:1.10.3210.10|SSF109604|TIGR03276 Alide2_4563 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR017715|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily|Putative aminophosphonate oxidoreductase GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|TIGR03329 Alide2_4564 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000821|IPR001608|IPR009006|IPR011079|IPR020622|IPR029066 Alanine racemase|Alanine racemase, C-terminal|Alanine racemase, N-terminal|Alanine racemase, pyridoxal-phosphate attachment site|Alanine racemase/group IV decarboxylase, C-terminal|PLP-binding barrel GO:0003824|GO:0006522|GO:0008784 G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_01201|PF00842|PF01168|PR00992|PS00395|SM01005|SSF50621|SSF51419|TIGR00492 Alide2_4565 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR023080|IPR036188 D-amino acid dehydrogenase DadA|FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0008718|GO:0016491|GO:0019478|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|MF_01202|PF01266|SSF51905|SSF54373 Alide2_4566 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000485|IPR011008|IPR019885|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|PS00519|SM00344|SSF46785|SSF54909 Alide2_4567 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000835|IPR036388|IPR036390 MarR-type HTH domain|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|PF13463|SSF46785 Alide2_4568 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003593|IPR013765|IPR020584|IPR023400|IPR027417 AAA+ ATPase domain|DNA recombination and repair protein RecA|DNA recombination and repair protein RecA, C-terminal|DNA recombination/repair protein RecA, conserved site|P-loop containing nucleoside triphosphate hydrolase GO:0003677|GO:0003697|GO:0005524|GO:0006259|GO:0006281|GO:0008094 G3DSA:3.30.250.10|G3DSA:3.40.50.300|MF_00268|PF00154|PR00142|PS00321|SM00382|SSF52540|SSF54752|TIGR02012 Alide2_4569 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003783|IPR036388 Regulatory protein RecX|Winged helix-like DNA-binding domain superfamily GO:0006282 G3DSA:1.10.10.10|MF_01114|PF02631 Alide2_4570 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012434 Protein of unknown function DUF1631 PF07793 Alide2_4571 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005665|IPR022645|IPR022646|IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site|Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 G3DSA:1.20.1640.10|MF_01464_B|PF02355|PF07549|PR01755|SSF82866|TIGR00916|TIGR00966 Alide2_4572 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005791|IPR022645|IPR022646|IPR022813|IPR027398 Protein translocase subunit SecD|Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site|SecD export protein N-terminal TM domain GO:0006886|GO:0015450 G3DSA:1.20.1640.10|G3DSA:3.30.1360.200|G3DSA:3.30.70.3400|MF_01463_B|PF02355|PF07549|PF13721|SSF82866|TIGR00916|TIGR01129 Alide2_4573 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003849 Preprotein translocase YajC PF02699|PR01853|SM01323|TIGR00739 Alide2_4574 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002869|IPR011766|IPR019752|IPR029061 Pyruvate-flavodoxin oxidoreductase, central domain|Pyruvate/ketoisovalerate oxidoreductase, catalytic domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0016491|GO:0016903|GO:0030976|GO:0055114 G3DSA:3.40.50.970|G3DSA:3.40.920.10|PF01558|PF02775|SSF52518|SSF53323 Alide2_4575 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000485|IPR011008|IPR019885|IPR019887|IPR019888|IPR036388|IPR036390 AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0005622|GO:0006355|GO:0043565 G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|PS00519|SM00344|SSF46785|SSF54909 Alide2_4576 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010290|IPR036259 MFS transporter superfamily|Transmembrane secretion effector G3DSA:1.20.1250.20|PF05977|SSF103473 Alide2_4577 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005300|IPR010611|IPR026044|IPR036908 3D domain|Lytic transglycosylase MltA, domain B|Membrane-bound lytic murein transglycosylase A|RlpA-like domain superfamily GO:0004553|GO:0009254|GO:0019867 G3DSA:2.40.240.50|G3DSA:2.40.40.10|PF03562|PF06725|PIRSF019422|SM00925|SSF50685 Alide2_4578 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006664|IPR006665|IPR036737|IPR039567 Glycine zipper domain|OmpA-like domain|OmpA-like domain superfamily|Outer membrane protein, bacterial GO:0009279|GO:0016021 G3DSA:3.30.1330.60|PF00691|PF13488|PR01021|PR01023|SSF103088 Alide2_4579 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR016032|IPR036388 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|SM00421|SM00448|SSF46894|SSF52172 Alide2_4580 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000014|IPR001610|IPR003594|IPR003661|IPR004358|IPR013767|IPR035965|IPR036097|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|PAC motif|PAS domain|PAS domain superfamily|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0000155|GO:0006355|GO:0007165|GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00989|PF02518|PR00344|SM00086|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229 Alide2_4581 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001110|IPR003010|IPR036526 Carbon-nitrogen hydrolase|Carbon-nitrogen hydrolase superfamily|Uncharacterised protein family UPF0012, conserved site GO:0006807 G3DSA:3.60.110.10|PF00795|PS01227|SSF56317 Alide2_4582 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011836|IPR025263|IPR032712 AsmA-like, C-terminal|Conserved hypothetical protein CHP02099|Domain of unknown function DUF3971 PF13116|PF13502|TIGR02099 Alide2_4583 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005190|IPR013546|IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme|Glutamate-ammonia ligase adenylyltransferase, repeated domain|PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0008882|GO:0016779 G3DSA:1.20.120.1510|G3DSA:1.20.120.330|G3DSA:3.30.460.100|MF_00802|PF03710|PF08335|SSF81301|SSF81593 Alide2_4584 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR032317 RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF16576|SSF111369|TIGR01730 Alide2_4585 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR027463 Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866 Alide2_4586 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004045|IPR036249|IPR036282 Glutathione S-transferase, C-terminal domain superfamily|Glutathione S-transferase, N-terminal|Thioredoxin-like superfamily GO:0005515 G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|SSF47616|SSF52833 Alide2_4587 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000362|IPR004769|IPR008948|IPR013539|IPR020557|IPR022761|IPR024083 Adenylosuccinate lyase|Adenylosuccinate lyase PurB, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like GO:0003824|GO:0004018|GO:0006188|GO:0009152 G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|PF00206|PF08328|PR00149|PS00163|SSF48557|TIGR00928 Alide2_4588 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009822|IPR011335|IPR038590 Restriction endonuclease type II-like|YaeQ|YaeQ superfamily G3DSA:3.10.640.10|PF07152|PIRSF011484|SM01322|SSF52980 Alide2_4589 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018551 Domain of unknown function DUF2007 PF09413 Alide2_4590 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010710|IPR022191 Protein of unknown function DUF1289|Protein of unknown function DUF3717 PF06945|PF12512 Alide2_4591 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005496|IPR022301 Integral membrane protein TerC|Integral membrane protein YjbE GO:0016021 PF03741|TIGR03717 Alide2_4592 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic SSF52402 Alide2_4593 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_4595 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV PF04020 Alide2_4596 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001915 Peptidase M48 GO:0004222|GO:0006508 PF01435 Alide2_4597 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002820|IPR023045|IPR036522 Molybdenum cofactor biosynthesis C|Molybdopterin cofactor biosynthesis C (MoaC) domain|Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 G3DSA:3.30.70.640|MF_01224_B|PF01967|SSF55040|TIGR00581 Alide2_4598 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000917|IPR017849|IPR017850 Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain superfamily|Sulfatase, N-terminal GO:0003824|GO:0008484 G3DSA:3.40.720.10|PF00884|SSF53649 Alide2_4600 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001082|IPR012902 Fimbrial protein pilin|Prokaryotic N-terminal methylation site GO:0007155|GO:0009289 G3DSA:3.30.700.10|PF00114|PF07963|PS00409|SSF54523|TIGR02532 Alide2_4601 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000396|IPR001279|IPR036866 Cyclic-AMP phosphodiesterase, class-II|Metallo-beta-lactamase|Ribonuclease Z/Hydroxyacylglutathione hydrolase-like GO:0004115|GO:0006198 G3DSA:3.60.15.10|PF12706|PR00388|SM00849|SSF56281 Alide2_4602 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000253|IPR008984 Forkhead-associated (FHA) domain|SMAD/FHA domain superfamily GO:0005515 G3DSA:2.60.200.20|PF00498|SM00240|SSF49879 Alide2_4603 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001932|IPR036457 PPM-type phosphatase domain|PPM-type phosphatase domain superfamily GO:0003824 G3DSA:3.60.40.10|PF13672|SM00331|SM00332|SSF81606 Alide2_4604 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005496|IPR022301 Integral membrane protein TerC|Integral membrane protein YjbE GO:0016021 PF03741|TIGR03717 Alide2_4605 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003781|IPR005810|IPR005811|IPR016102|IPR017440|IPR033847|IPR036291 ATP-citrate lyase/succinyl-CoA ligase|ATP-citrate lyase/succinyl-CoA ligase, active site|ATP-citrate lyase/succinyl-CoA ligase, conserved site|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA ligase, alpha subunit|Succinyl-CoA synthetase-like GO:0003824|GO:0048037 G3DSA:3.40.50.261|G3DSA:3.40.50.720|MF_01988|PF00549|PF02629|PIRSF001553|PR01798|PS00399|PS01216|SM00881|SSF51735|SSF52210|TIGR01019 Alide2_4606 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005809|IPR005811|IPR013650|IPR013815|IPR016102|IPR017866 ATP-citrate lyase/succinyl-CoA ligase|ATP-grasp fold, subdomain 1|ATP-grasp fold, succinyl-CoA synthetase-type|Succinate--CoA synthetase, beta subunit|Succinyl-CoA synthetase, beta subunit, conserved site|Succinyl-CoA synthetase-like GO:0003824|GO:0005524|GO:0006099 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|MF_00558|PF00549|PF08442|PIRSF001554|PS01217|SSF52210|SSF56059|TIGR01016 Alide2_4607 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000534|IPR010136|IPR023013|IPR036291 N-acetyl-gamma-glutamyl-phosphate reductase, active site|N-acetyl-gamma-glutamyl-phosphate reductase, type 2|NAD(P)-binding domain superfamily|Semialdehyde dehydrogenase, NAD-binding GO:0003942|GO:0005737|GO:0006526|GO:0016620|GO:0051287|GO:0055114 G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_01110|PF01118|PS01224|SM00859|SSF51735|SSF55347|TIGR01851 Alide2_4608 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003488|IPR036388 DNA recombination-mediator protein A|Winged helix-like DNA-binding domain superfamily GO:0009294 G3DSA:1.10.10.10|G3DSA:3.40.50.450|PF02481|SSF102405|TIGR00732 Alide2_4609 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018392|IPR036779 LysM domain|LysM domain superfamily G3DSA:3.10.350.10|PF01476|SM00257|SSF54106 Alide2_4610 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023635|IPR036821 Peptide deformylase|Peptide deformylase superfamily G3DSA:3.90.45.10|MF_00163|PF01327|PIRSF004749|PR01576|SSF56420|TIGR00079 Alide2_4612 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001555|IPR002376|IPR005793|IPR005794|IPR011034|IPR036477|IPR037022 Formyl transferase, C-terminal|Formyl transferase, C-terminal domain superfamily|Formyl transferase, N-terminal|Formyl transferase, N-terminal domain superfamily|Formyl transferase-like, C-terminal domain superfamily|Methionyl-tRNA formyltransferase|Phosphoribosylglycinamide formyltransferase, active site GO:0003824|GO:0004479|GO:0009058|GO:0016742|GO:0071951 G3DSA:3.10.25.10|G3DSA:3.40.50.170|MF_00182|PF00551|PF02911|PS00373|SSF50486|SSF53328|TIGR00460 Alide2_4613 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011606 Branched-chain amino acid transport, permease PF03591 Alide2_4614 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008407 Branched-chain amino acid transport, AzlD PF05437 Alide2_4615 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001576|IPR015824|IPR015911|IPR036043 Phosphoglycerate kinase|Phosphoglycerate kinase superfamily|Phosphoglycerate kinase, N-terminal|Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 G3DSA:3.40.50.1260|MF_00145|PF00162|PIRSF000724|PR00477|PS00111|SSF53748 Alide2_4617 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014549 Flagellar protein FlgO PIRSF028688 Alide2_4618 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000620 EamA domain GO:0016020|GO:0016021 PF00892|SSF103481 Alide2_4619 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001754|IPR011060|IPR011995|IPR013785|IPR018089 Aldolase-type TIM barrel|Orotidine 5'-phosphate decarboxylase domain|Orotidine 5'-phosphate decarboxylase, active site|Orotidine 5'-phosphate decarboxylase, type 2|Ribulose-phosphate binding barrel GO:0003824|GO:0004590|GO:0006207|GO:0006221 G3DSA:3.20.20.70|MF_01215|PF00215|PS00156|SM00934|SSF51366|TIGR02127 Alide2_4620 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|SSF46785|SSF53850 Alide2_4621 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4622 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 G3DSA:3.40.630.10|PF04952|SSF53187 Alide2_4623 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003660|IPR004089|IPR013587 HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain|Nitrate/nitrite sensing protein GO:0007165|GO:0016020|GO:0016021 G3DSA:1.10.287.950|PF00015|PF00672|PF08376|SM00283|SM00304|SSF58104 Alide2_4624 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR004602|IPR017871|IPR027417 ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|UvrABC system subunit A GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 G3DSA:1.10.8.280|G3DSA:1.20.1580.10|G3DSA:3.30.190.20|G3DSA:3.40.50.300|MF_00205|PF00005|PS00211|SSF52540|TIGR00630 Alide2_4625 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005829|IPR011701|IPR036259 MFS transporter superfamily|Major facilitator superfamily|Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 G3DSA:1.20.1250.20|PF07690|PS00216|SSF103473 Alide2_4626 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000424|IPR011344|IPR012340 Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding|Single-stranded DNA-binding protein GO:0003697|GO:0006260 G3DSA:2.40.50.140|MF_00984|PF00436|SSF50249|TIGR00621 Alide2_4627 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PF02652|TIGR00795 Alide2_4628 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004506|IPR014729|IPR023382 Adenine nucleotide alpha hydrolase-like domains|Rossmann-like alpha/beta/alpha sandwich fold|tRNA-specific 2-thiouridylase GO:0008033|GO:0016740|GO:0016783 G3DSA:2.30.30.280|G3DSA:2.40.30.10|G3DSA:3.40.50.620|MF_00144|PF03054|SSF52402|TIGR00420 Alide2_4629 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_4630 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007400 PrpF protein G3DSA:3.10.310.10|PF04303|SSF54506 Alide2_4631 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4632 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR023614 Porin domain superfamily G3DSA:2.40.160.10|PF13609|SSF56935 Alide2_4633 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_4634 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003953|IPR012831|IPR027477|IPR036188 FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain superfamily|Precorrin 3B synthase CobZ|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily G3DSA:3.50.50.60|G3DSA:3.90.700.10|PF00890|SSF51905|SSF56425|TIGR02485 Alide2_4635 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012830|IPR036197 Citrate utilization protein B|NarG-like superfamily SSF103501|SSF54862|TIGR02484 Alide2_4636 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4637 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002078|IPR002197|IPR003593|IPR009057|IPR025662|IPR025943|IPR027417|IPR035965 AAA+ ATPase domain|DNA binding HTH domain, Fis-type|Homeobox-like domain superfamily|P-loop containing nucleoside triphosphate hydrolase|PAS domain superfamily|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2 GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565 G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.20|G3DSA:3.40.50.300|PF00158|PF02954|PS00675|PS00676|SM00382|SSF46689|SSF52540|SSF55785 Alide2_4638 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029045|IPR034733 Acetyl-CoA carboxylase|ClpP/crotonase-like domain superfamily G3DSA:3.90.226.10|PF01039|SSF52096 Alide2_4639 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4640 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003781|IPR013815|IPR016102|IPR032875|IPR036291 ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain superfamily|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain GO:0005524|GO:0048037 G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|SM00881|SSF51735|SSF52210|SSF56059 Alide2_4641 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005479|IPR005481|IPR005482|IPR011054|IPR016185 Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain superfamily|Rudiment single hybrid motif GO:0005524 G3DSA:3.30.470.130|PF00289|PF02785|PF02786|PS00866|PS00867|SM00878|SSF51246|SSF52440|SSF56059 Alide2_4642 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000089|IPR011053 Biotin/lipoyl attachment|Single hybrid motif G3DSA:2.40.50.100|PF00364|SSF51230 Alide2_4643 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 Alide2_4644 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000086|IPR015797 NUDIX hydrolase domain|NUDIX hydrolase-like domain superfamily GO:0016787 G3DSA:3.90.79.10|PF00293|SSF55811 Alide2_4646 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000531|IPR010100|IPR012910|IPR036942|IPR037066 TonB-dependent copper receptor|TonB-dependent receptor, plug domain|TonB-dependent receptor, plug domain superfamily|TonB-dependent receptor-like, beta-barrel|TonB-dependent receptor-like, beta-barrel domain superfamily G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|SSF56935|TIGR01778 Alide2_4647 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003736|IPR006683|IPR029069 HotDog domain superfamily|Phenylacetic acid degradation-related domain|Thioesterase domain G3DSA:3.10.129.10|PF03061|SSF54637|TIGR00369 Alide2_4648 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_4649 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4650 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_4651 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR029069|IPR039569 HotDog domain superfamily|N-terminal of MaoC-like dehydratase G3DSA:3.10.129.10|PF13452|SSF54637 Alide2_4652 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000873|IPR025110 AMP-binding enzyme, C-terminal domain|AMP-dependent synthetase/ligase GO:0003824 G3DSA:3.30.300.310|G3DSA:3.40.50.12780|PF00501|PF13193|SSF56801 Alide2_4653 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001783|IPR017938|IPR023366|IPR026017 ATP synthase subunit alpha, N-terminal domain-like superfamily|Lumazine-binding domain|Lumazine-binding protein|Riboflavin synthase-like beta-barrel G3DSA:2.40.30.20|PF00677|PIRSF000498|SSF63380|TIGR00187 Alide2_4654 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 PF01810|PIRSF006324 Alide2_4655 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR004358|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF02518|PR00344|SM00387|SSF55874 Alide2_4656 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001789|IPR001867|IPR011006|IPR036388 CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-like DNA-binding domain superfamily GO:0000160|GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|SM00448|SM00862|SSF52172 Alide2_4657 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025711 PepSY domain G3DSA:3.10.450.40|PF03413 Alide2_4658 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025711 PepSY domain PF13670 Alide2_4659 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001221|IPR013112|IPR013130|IPR017938|IPR039261 FAD-binding 8|Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Ferric reductase transmembrane component-like domain|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF01794|PF08022|PR00410|SSF52343|SSF63380 Alide2_4660 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011577|IPR016174 Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane GO:0009055|GO:0016020|GO:0016021|GO:0022904 PF01292|SSF81342 Alide2_4661 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025711 PepSY domain PF13670 Alide2_4662 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014469 Protein of unknown function DUF2271 PF10029 Alide2_4663 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001433|IPR001709|IPR005625|IPR008254|IPR008333|IPR017938|IPR029039|IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain|Flavodoxin/nitric oxide synthase|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain|Flavoprotein-like superfamily|Oxidoreductase FAD/NAD(P)-binding|PepSY-associated TM protein|Riboflavin synthase-like beta-barrel GO:0010181|GO:0016491|GO:0055114 G3DSA:2.40.30.10|G3DSA:3.40.50.360|G3DSA:3.40.50.80|PF00175|PF00258|PF00970|PF03929|PR00371|SSF52218|SSF52343|SSF63380 Alide2_4664 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003374|IPR024932 ApbE-like superfamily|Flavin transferase ApbE GO:0017013 G3DSA:3.10.520.20|PF02424|PIRSF006268|SSF143631 Alide2_4667 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001757|IPR004014|IPR006068|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299|IPR036412 Cation-transporting P-type ATPase, C-terminal|Cation-transporting P-type ATPase, N-terminal|HAD superfamily|HAD-like superfamily|P-type ATPase|P-type ATPase, A domain superfamily|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, transmembrane domain superfamily GO:0000166|GO:0016021 G3DSA:1.20.1110.10|G3DSA:2.60.120.1500|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00689|PF00690|PF00702|PR00119|PR00120|PS00154|SM00831|SSF56784|SSF81653|SSF81665|TIGR01494 Alide2_4670 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001295|IPR004136|IPR013785 Aldolase-type TIM barrel|Dihydroorotate dehydrogenase, conserved site|Nitronate monooxygenase GO:0003824|GO:0004152|GO:0006207|GO:0018580|GO:0055114 G3DSA:3.20.20.70|PF03060|PS00912|SSF51412 Alide2_4671 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4672 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 Alide2_4673 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_4674 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_4675 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011032|IPR013149|IPR013154|IPR014188|IPR020843|IPR036291 Acrylyl-CoA reductase AcuI|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like superfamily|NAD(P)-binding domain superfamily|Polyketide synthase, enoylreductase domain GO:0016491|GO:0055114 G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|SM00829|SSF50129|SSF51735|TIGR02823 Alide2_4677 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006089|IPR006091|IPR009075|IPR009100|IPR013786|IPR036250|IPR037069 Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase-like, C-terminal|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily|Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily|Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0016627|GO:0050660|GO:0055114 G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|SSF47203|SSF56645 Alide2_4678 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4679 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005471|IPR014757|IPR029016|IPR036388|IPR036390 GAF-like domain superfamily|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|SM00346|SSF46785|SSF55781 Alide2_4680 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003673|IPR023606 CoA-transferase family III|CoA-transferase family III domain superfamily GO:0003824 G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796 Alide2_4681 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|SSF46785|SSF53850 Alide2_4682 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005064 Bordetella uptake gene GO:0030288 G3DSA:3.40.190.10|G3DSA:3.40.190.150|PF03401|PIRSF017082|SSF53850 Alide2_4683 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000101|IPR029055 Gamma-glutamyltranspeptidase|Nucleophile aminohydrolases, N-terminal GO:0006751|GO:0036374 G3DSA:1.10.246.130|G3DSA:3.60.20.40|PF01019|PR01210|SSF56235|TIGR00066 Alide2_4685 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002937|IPR036188 Amine oxidase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.50.50.60|PF01593|SSF51905 Alide2_4686 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001045|IPR029063|IPR030373 Polyamine biosynthesis domain, conserved site|S-adenosyl-L-methionine-dependent methyltransferase|Spermidine/spermine synthases GO:0003824 G3DSA:3.40.50.150|MF_00198|PF01564|PS01330|SSF53335 Alide2_4687 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007140 Protein of unknown function DUF350 PF03994 Alide2_4688 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025235 Domain of unknown function DUF4178 PF13785 Alide2_4689 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018649|IPR033880|IPR036013 Band 7/SPFH domain superfamily|SHOCT domain|SPFH domain, YdjI-like PF09851|PF13421|SSF117892 Alide2_4690 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018638 Domain of unknown function DUF2061, membrane PF09834 Alide2_4691 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001444|IPR010930 Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain GO:0071973 PF00460|PF06429 Alide2_4692 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_4693 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005814|IPR015421|IPR015422|IPR015424 Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase domain 1|Pyridoxal phosphate-dependent transferase, major domain GO:0003824|GO:0008483|GO:0030170 G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00202|PIRSF000521|PS00600|SSF53383 Alide2_4694 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010061|IPR015590|IPR016161|IPR016162|IPR016163 Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, N-terminal|Aldehyde/histidinol dehydrogenase|Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0016491|GO:0016620|GO:0055114 G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|SSF53720|TIGR01722 Alide2_4695 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR007894|IPR029787 GGDEF domain|MASE2|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|PF05230|SM00267|SSF55073|TIGR00254 Alide2_4696 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000524|IPR008920|IPR011711|IPR036388|IPR036390 GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|SM00345|SM00895|SSF46785|SSF48008 Alide2_4697 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028081|IPR028082 Leucine-binding protein domain|Periplasmic binding protein-like I G3DSA:3.40.50.2300|PF13458|SSF53822 Alide2_4698 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_4699 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 PF02653 Alide2_4700 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417|IPR032823 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PF12399|PS00211|SM00382|SSF52540 Alide2_4701 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase GO:0005524|GO:0016887 G3DSA:3.40.50.300|PF00005|PS00211|SM00382|SSF52540 Alide2_4702 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR010158|IPR011650|IPR036264 Amidase, carbamoylase-type|Bacterial exopeptidase dimerisation domain|Peptidase M20|Peptidase M20, dimerisation domain GO:0016787|GO:0016813 G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF001235|SSF53187|SSF55031|TIGR01879 Alide2_4703 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009197|IPR010799|IPR015995 Microcystin LR degradation protein MlrC|Microcystin LR degradation protein MlrC, C-terminal|Microcystin LR degradation protein MlrC, N-terminal PF07171|PF07364|PIRSF012702 Alide2_4704 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002505|IPR012188|IPR012301|IPR012302|IPR032683|IPR036291|IPR037062 Malate dehydrogenase enzyme, N-terminal|Malic enzyme, N-terminal domain|Malic enzyme, N-terminal domain superfamily|Malic enzyme, NAD-binding|NAD(P)-binding domain superfamily|NAD(P)-dependent malic enzyme|Phosphate acetyl/butaryl transferase GO:0004470|GO:0004471|GO:0006108|GO:0016746|GO:0046872|GO:0051287|GO:0055114 G3DSA:3.40.50.10380|G3DSA:3.40.50.10750|G3DSA:3.40.50.10950|G3DSA:3.40.50.720|PF00390|PF01515|PF03949|PF12434|PIRSF036684|SM00919|SM01274|SSF51735|SSF53223|SSF53659 Alide2_4705 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000026|IPR016191 Guanine-specific ribonuclease N1/T1/U2|Ribonuclease/ribotoxin GO:0003723|GO:0004521|GO:0004540 G3DSA:3.10.450.30|PF00545|SSF53933 Alide2_4706 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000468|IPR035905 Barstar (barnase inhibitor)|Barstar-like superfamily G3DSA:3.30.370.10|PF01337|SSF52038 Alide2_4707 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001737|IPR011530|IPR020596|IPR020598|IPR023165|IPR029063 Ribosomal RNA adenine dimethylase|Ribosomal RNA adenine methylase transferase, N-terminal|Ribosomal RNA adenine methylase transferase, conserved site|Ribosomal RNA adenine methyltransferase KsgA/Erm|S-adenosyl-L-methionine-dependent methyltransferase|rRNA adenine dimethylase-like GO:0000154|GO:0000179|GO:0006364|GO:0008649 G3DSA:1.10.8.100|G3DSA:3.40.50.150|MF_00607|PF00398|PS01131|SM00650|SSF53335|TIGR00755 Alide2_4708 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000297|IPR015391|IPR023034|IPR023058|IPR027304 Peptidyl-prolyl cis-trans isomerase, PpiC-type|Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site|Peptidyl-prolyl isomerase SurA|SurA N-terminal|Trigger factor/SurA domain superfamily GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 G3DSA:1.10.4030.10|G3DSA:3.10.50.40|MF_01183|PF00639|PF09312|PS01096|SSF109998|SSF54534 Alide2_4709 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007543|IPR020889 LPS-assembly protein LptD|Organic solvent tolerance protein, C-terminal GO:0009279|GO:0010033|GO:0015920|GO:0019867|GO:0043165|GO:0061024 MF_01411|PF04453 Alide2_4710 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002575|IPR011009 Aminoglycoside phosphotransferase|Protein kinase-like domain superfamily G3DSA:3.30.200.20|G3DSA:3.90.1200.10|PF01636|SSF56112 Alide2_4711 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006700|IPR015947|IPR029026|IPR029028 Alpha/beta knot methyltransferases|PUA-like superfamily|Ribosomal RNA small subunit methyltransferase E|tRNA (guanine-N1-)-methyltransferase, N-terminal GO:0006364|GO:0008168 G3DSA:2.40.240.20|G3DSA:3.40.1280.10|PF04452|PIRSF015601|SSF75217|SSF88697|TIGR00046 Alide2_4714 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR027417 P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13555|SSF52540 Alide2_4715 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002933|IPR011650 Peptidase M20|Peptidase M20, dimerisation domain GO:0016787 G3DSA:3.40.630.10|PF01546|PF07687|SSF53187 Alide2_4716 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000160|IPR029787 GGDEF domain|Nucleotide cyclase G3DSA:3.30.70.270|PF00990|SM00267|SSF55073|TIGR00254 Alide2_4717 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010743|IPR029063 Methionine biosynthesis MetW|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF07021|SSF53335|TIGR02081 Alide2_4718 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000073|IPR008220|IPR029058 Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 G3DSA:1.10.1740.110|G3DSA:3.40.50.1820|MF_00296|PF00561|PIRSF000443|SSF53474|TIGR01392 Alide2_4719 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001727 Gdt1 family PF01169 Alide2_4720 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000504|IPR012677|IPR035979 Nucleotide-binding alpha-beta plait domain superfamily|RNA recognition motif domain|RNA-binding domain superfamily GO:0003676 G3DSA:3.30.70.330|PF00076|SM00360|SSF54928 Alide2_4721 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000504|IPR012677|IPR035979 Nucleotide-binding alpha-beta plait domain superfamily|RNA recognition motif domain|RNA-binding domain superfamily GO:0003676 G3DSA:3.30.70.330|PF00076|SM00360|SSF54928 Alide2_4722 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002347|IPR020904|IPR036291 NAD(P)-binding domain superfamily|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site GO:0016491 G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|SM00822|SSF51735 Alide2_4723 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010664|IPR026265 Lipopolysaccharide assembly, LptC-related|Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 PF06835|TIGR04409 Alide2_4724 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010023|IPR023214|IPR036412 HAD superfamily|HAD-like superfamily|KdsC family GO:0016788 G3DSA:3.40.50.1000|PF08282|PIRSF006118|SSF56784|TIGR01670 Alide2_4725 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000644|IPR001347|IPR004800 CBS domain|Phosphosugar isomerase, KdsD/KpsF-type|Sugar isomerase (SIS) GO:0005975|GO:0016853|GO:0097367|GO:1901135 G3DSA:3.10.580.10|G3DSA:3.40.50.10490|PF00571|PF01380|PIRSF004692|SM00116|SSF53697|TIGR00393 Alide2_4726 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003148|IPR004771|IPR006037|IPR006153|IPR036291|IPR036721|IPR038770 Cation/H+ exchanger|K+/H+ exchanger|NAD(P)-binding domain superfamily|Regulator of K+ conductance, C-terminal|Regulator of K+ conductance, C-terminal domain superfamily|Regulator of K+ conductance, N-terminal|Sodium/solute symporter superfamily GO:0006812|GO:0006813|GO:0008324|GO:0015299|GO:0016021|GO:0055085 G3DSA:1.20.1530.20|G3DSA:3.30.70.1450|G3DSA:3.40.50.720|PF00999|PF02080|PF02254|SSF116726|SSF51735|TIGR00932 Alide2_4727 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000836|IPR005764|IPR029057 Adenine phosphoribosyl transferase|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like GO:0003999|GO:0005737|GO:0006168|GO:0009116 G3DSA:3.40.50.2020|MF_00004|PF00156|SSF53271|TIGR01090 Alide2_4729 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000595|IPR014710|IPR018490 Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold G3DSA:2.60.120.10|PF00027|SM00100|SSF51206 Alide2_4730 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR004520|IPR005225|IPR006073|IPR018948|IPR025867|IPR027266|IPR027368|IPR027417 GTP binding domain|GTP-binding protein TrmE, N-terminal|GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1|MnmE, helical domain|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|tRNA modification GTPase MnmE|tRNA modification GTPase MnmE domain 2 GO:0003924|GO:0005515|GO:0005525|GO:0005622|GO:0006400 G3DSA:1.20.120.430|G3DSA:3.30.1360.120|G3DSA:3.40.50.300|MF_00379|PF01926|PF10396|PF12631|PR00326|SSF116878|SSF52540|TIGR00231|TIGR00450 Alide2_4731 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001638 Solute-binding protein family 3/N-terminal domain of MltF G3DSA:3.40.190.10|PF00497|SM00062|SSF53850 Alide2_4732 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006076|IPR036188 FAD dependent oxidoreductase|FAD/NAD(P)-binding domain superfamily GO:0016491|GO:0055114 G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|SSF54373 Alide2_4733 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000847|IPR005119|IPR036388|IPR036390 LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix DNA-binding domain superfamily|Winged helix-like DNA-binding domain superfamily GO:0003700|GO:0006355 G3DSA:1.10.10.10|G3DSA:3.40.190.290|PF00126|PF03466|SSF46785|SSF53850 Alide2_4734 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001920|IPR004380|IPR015942|IPR018187 Asp/Glu racemase|Asp/Glu racemase, active site 1|Asp/Glu/hydantoin racemase|Aspartate racemase GO:0006520|GO:0006807|GO:0016855|GO:0036361 G3DSA:3.40.50.1860|PF01177|PS00923|SSF53681|TIGR00035 Alide2_4735 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007035|IPR027476|IPR036177 D-aminopeptidase, N-terminal|Peptidase M55, D-aminopeptidase|Peptidase M55, D-aminopeptidase superfamily G3DSA:3.30.1360.130|G3DSA:3.40.50.10780|PF04951|PIRSF015853|SSF63992 Alide2_4736 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005321|IPR016117 ArgJ-like domain superfamily|Peptidase S58, DmpA G3DSA:3.60.70.12|PF03576|SSF56266 Alide2_4737 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR025966|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily|Oligopeptide transport permease C-like, N-terminal domain GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|PF12911|SSF161098 Alide2_4738 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000515|IPR035906 ABC transporter type 1, transmembrane domain MetI-like|MetI-like superfamily GO:0016020|GO:0055085 G3DSA:1.10.3720.10|PF00528|SSF161098 Alide2_4739 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|SSF53850 Alide2_4740 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003439|IPR003593|IPR013563|IPR017871|IPR027417 AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase GO:0000166|GO:0005524|GO:0015833|GO:0016887 G3DSA:3.40.50.300|PF00005|PF08352|PS00211|SM00382|SSF52540|TIGR01727 Alide2_4741 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000246|IPR029055 Nucleophile aminohydrolases, N-terminal|Peptidase T2, asparaginase 2 GO:0016787 G3DSA:3.60.20.30|PF01112|SSF56235 Alide2_4742 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000281|IPR001347|IPR009057|IPR036388 Helix-turn-helix protein RpiR|Homeobox-like domain superfamily|Sugar isomerase (SIS)|Winged helix-like DNA-binding domain superfamily GO:0003677|GO:0003700|GO:0006355|GO:0097367|GO:1901135 G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|SSF46689|SSF53697 Alide2_4745 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000914|IPR030678 Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain GO:0043190|GO:0055085 G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|SSF53850 Alide2_4746 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001708|IPR019998|IPR028053|IPR028055|IPR038210|IPR038221 Membrane insertase YidC/ALB3/OXA1/COX18|Membrane insertase YidC|Membrane insertase YidC, N-terminal|Membrane insertase YidC, periplasmic domain|Membrane insertase YidC/Oxa1, C-terminal|YidC, periplasmic domain superfamily GO:0016021|GO:0032977 G3DSA:2.70.98.90|MF_01810|PF02096|PF14849|PR00701|PR01900|TIGR03592|TIGR03593 Alide2_4747 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR002696 Putative membrane protein insertion efficiency factor MF_00386|PD004225|PF01809|SM01234|TIGR00278 Alide2_4748 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000100|IPR014721|IPR020568 Ribonuclease P|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup GO:0000049|GO:0004526|GO:0008033 G3DSA:3.30.230.10|PF00825|SSF54211 Alide2_4749 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000271|IPR020939 Ribosomal protein L34|Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 MF_00391|PD003101|PF00468|PS00784|TIGR01030 Alide2_4750 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010985 Ribbon-helix-helix GO:0006355 SSF47598 Alide2_4751 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019476|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system coupling protein TraD, DNA-binding domain G3DSA:1.10.8.80|G3DSA:3.40.50.300|PF10412|SSF52540 Alide2_4752 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR028250|IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain|Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily G3DSA:2.60.40.1250|PF11412|SSF74863 Alide2_4753 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014059|IPR014862|IPR027417 Conjugative relaxase, N-terminal|P-loop containing nucleoside triphosphate hydrolase|TrwC relaxase G3DSA:3.40.50.300|PF08751|PF13604|SSF52540|SSF55464|TIGR02686 Alide2_4755 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR013559 YheO-like PD037769|PF08348 Alide2_4756 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014931|IPR036493 Hypothetical protein YunC superfamily|Protein of unknown function DUF1805 G3DSA:3.30.1980.10|PF08827|SSF102891 Alide2_4757 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003594|IPR011712|IPR036890 Histidine kinase/HSP90-like ATPase|Histidine kinase/HSP90-like ATPase superfamily|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 G3DSA:3.30.565.10|PF02518|PF07730|SM00387|SSF55874 Alide2_4758 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000792|IPR001789|IPR011006|IPR016032 CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal GO:0000160|GO:0003677|GO:0006355 G3DSA:3.40.50.12740|PF00072|PF00196|SM00421|SM00448|SSF46894|SSF52172 Alide2_4759 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR008258|IPR023346 Lysozyme-like domain superfamily|Transglycosylase SLT domain 1 G3DSA:1.10.530.10|PF01464|SSF53955 Alide2_4762 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 PF07178|TIGR02762 Alide2_4763 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR007973 Pilus assembly TraE GO:0000746 PF05309 Alide2_4764 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010563 Pilus assembly TraK PF06586 Alide2_4765 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR005498 Type IV secretion system, VirB10 / TraB / TrbI PF03743 Alide2_4766 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009094|IPR012336|IPR018950|IPR036249 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily|Disulphide bond isomerase, DsbC/G, N-terminal|Thioredoxin-like fold|Thioredoxin-like superfamily GO:0042597 G3DSA:3.10.450.70|G3DSA:3.40.30.10|PF10411|PF13098|SSF52833|SSF54423 Alide2_4768 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014118 Type IV conjugative transfer system protein TraV PF09676|TIGR02747 Alide2_4769 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014117|IPR025955|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC|Type-IV secretion system protein TraC/Conjugative transfer ATPase G3DSA:1.10.8.730|G3DSA:3.40.50.300|PF11130|PF12846|SSF52540|TIGR02746 Alide2_4771 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR019533|IPR036286 LexA/Signal peptidase-like superfamily|Peptidase S26 G3DSA:2.10.109.10|PF10502|SSF51306 Alide2_4772 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014114|IPR025864 Type-F conjugative transfer system protein TraW|Type-F conjugative transfer system protein TraW N-terminal domain PF12477|TIGR02743 Alide2_4773 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009649 TraU PF06834 Alide2_4774 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014113|IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC|Type-F conjugative transfer system pilin assembly protein TrbC, subgroup PF09673|TIGR02742 Alide2_4776 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN PF06986 Alide2_4778 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR036249|IPR039555 F plasmid transfer operon protein|Thioredoxin-like superfamily G3DSA:3.40.30.10|PF13728|SSF52833 Alide2_4779 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010927 Type IV conjugative transfer system protein TraH PF06122 Alide2_4780 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR012931 TraG-like, N-terminal PF07916 Alide2_4782 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001915 Peptidase M48 GO:0004222|GO:0006508 G3DSA:3.30.2010.10|PF01435 Alide2_4785 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR022765 Dna2/Cas4, domain of unknown function DUF83 PF01930 Alide2_4788 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.8.1050 Alide2_4789 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003812|IPR036597 Fido domain|Fido-like domain superfamily G3DSA:1.10.3290.10|PF02661|SSF140931 Alide2_4792 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010488|IPR027417 P-loop containing nucleoside triphosphate hydrolase|Zeta toxin domain GO:0005524|GO:0016301 G3DSA:3.40.50.300|PF06414|SSF52540 Alide2_4793 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009553 Protein of unknown function DUF1173 PF06666 Alide2_4795 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000119|IPR010992 Histone-like DNA-binding protein|Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 G3DSA:4.10.520.10|PF00216|PR01727|SM00411|SSF47729 Alide2_4796 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006665|IPR036737 OmpA-like domain|OmpA-like domain superfamily G3DSA:3.30.1330.60|PF00691|SSF103088 Alide2_4797 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011969|IPR021109 Aspartic peptidase domain superfamily|Clan AA aspartic peptidase, C-terminal G3DSA:2.40.70.10|PF13975|SSF50630|TIGR02281 Alide2_4799 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR010718 Protein of unknown function DUF1294 PF06961 Alide2_4800 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR011969|IPR021109 Aspartic peptidase domain superfamily|Clan AA aspartic peptidase, C-terminal G3DSA:2.40.70.10|PF13975|SSF50630|TIGR02281 Alide2_4801 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic G3DSA:1.10.3210.10|SSF109604 Alide2_4804 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006171|IPR013264|IPR037068 DNA primase, catalytic core, N-terminal|DNA primase, catalytic core, N-terminal domain superfamily|TOPRIM domain G3DSA:3.40.1360.10|G3DSA:3.90.980.10|PF08275|PF13155|SM00493|SSF56731 Alide2_4806 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR025669|IPR027417 AAA domain|P-loop containing nucleoside triphosphate hydrolase G3DSA:3.40.50.300|PF13614|PIRSF009320|SSF52540 Alide2_4807 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003115|IPR004437|IPR013741|IPR036086 ParB/RepB/Spo0J partition protein family|ParB/Sulfiredoxin|ParB/Sulfiredoxin superfamily|Repressor KorB domain GO:0003677 G3DSA:3.90.1530.30|PF02195|PF08535|SM00470|SSF110849|TIGR00180 Alide2_4808 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR032428 TrfB transcriptional repressor protein G3DSA:1.10.10.2690|PF16509 Alide2_4809 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR009241|IPR014056 Addiction module killer protein, predicted|Toxin HigB-like PF05973|PIRSF028744|TIGR02683 Alide2_4810 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR014057 Uncharacterized protein HI1420 TIGR02684 Alide2_4811 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR018777 Replication initiator protein A PF10134 Alide2_4812 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021104 KfrA, N-terminal DNA-binding domain PF11740 Alide2_4815 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001525|IPR029063 C-5 cytosine methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase GO:0008168 G3DSA:3.40.50.150|G3DSA:3.90.120.10|PF00145|PR00105|SSF53335 Alide2_4816 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001736|IPR025202 Phospholipase D-like domain|Phospholipase D/Transphosphatidylase GO:0003824 G3DSA:3.30.870.10|PF13091|SM00155|SSF56024 Alide2_4817 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR003423|IPR010131 Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT GO:0015562|GO:0016020|GO:0022857|GO:0055085 G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|SSF56954|TIGR01845 Alide2_4818 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001036|IPR004764|IPR027463 Acriflavin resistance protein|Hydrophobe/amphiphile efflux-1 HAE1|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains GO:0006855|GO:0015562|GO:0016020|GO:0016021|GO:0022857|GO:0055085 G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|SSF82693|SSF82714|SSF82866|TIGR00915 Alide2_4819 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006143|IPR039562 Membrane fusion protein, biotin-lipoyl like domain|RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 G3DSA:1.10.287.470|G3DSA:2.40.30.170|G3DSA:2.40.420.20|G3DSA:2.40.50.100|PF13533|SSF111369|TIGR01730 Alide2_4820 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001647|IPR009057|IPR023772 DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeobox-like domain superfamily GO:0003677 G3DSA:1.10.357.10|PF00440|PR00455|PS01081|SSF46689 Alide2_4822 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR000424|IPR011344|IPR012340 Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding|Single-stranded DNA-binding protein GO:0003697|GO:0006260 G3DSA:2.40.50.140|MF_00984|PF00436|PIRSF002070|SSF50249|TIGR00621 Alide2_4824 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR026325 Protein of unknown function DUF932 PF06067 Alide2_4827 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR021944|IPR029063 Protein of unknown function DUF3560|S-adenosyl-L-methionine-dependent methyltransferase G3DSA:3.40.50.150|PF12083|PR00507|SSF53335 Alide2_4828 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR035338 Protein KleA/KleC PF17383 Alide2_4831 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR001405|IPR020891|IPR025657 RadC-like JAB domain|Uncharacterised protein family UPF0758|Uncharacterised protein family UPF0758, conserved site G3DSA:3.40.140.10|PF04002|PS01302|TIGR00608 Alide2_4835 /data/g2d_mirror_genbank/Alicycliphilus_denitrificans_K601/ASM20464v1_genomic IPR006119|IPR036162 Resolvase, N-terminal catalytic domain|Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 G3DSA:3.40.50.1390|PF00239|SM00857|SSF53041