locus_tag old_locus_tag gene Name start end strand product note type ID NCBI Alide2_0001 Alide2_0001 Alide2_0001 104 1525 + Chromosomal replication initiator protein dnaA SMART: Chromosomal replication initiator%2C DnaA C-terminal%3B ATPase%2C AAA+ type%2C core~TIGRFAM: Chromosomal replication control%2C initiator DnaA~KEGG: dia:Dtpsy_0001 chromosomal replication initiation protein~HAMAP: Chromosomal replication control%2C initiator DnaA~PFAM: Chromosomal replication control%2C initiator (DnaA)/regulator (Hda)%3B Chromosomal replication initiator%2C DnaA C-terminal gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0001 Alide2_0002 Alide2_0002 Alide2_0002 1652 2758 + DNA polymerase III%2C beta subunit SMART: DNA polymerase III%2C beta chain~TIGRFAM: DNA polymerase III%2C beta chain~KEGG: dia:Dtpsy_0002 DNA polymerase III%2C beta subunit~PFAM: DNA polymerase III%2C beta chain%2C C-terminal%3B DNA polymerase III%2C beta chain%2C N-terminal%3B DNA polymerase III%2C beta chain%2C central gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0002 Alide2_0003 Alide2_0003 Alide2_0003 2877 5459 + DNA gyrase%2C B subunit TIGRFAM: DNA gyrase%2C subunit B~PFAM: DNA topoisomerase%2C type IIA%2C subunit B%2C domain 2%3B ATPase-like%2C ATP-binding domain%3B Toprim domain%3B DNA topoisomerase%2C type IIA%2C subunit B%2C C-terminal~KEGG: dia:Dtpsy_0003 DNA gyrase%2C B subunit~SMART: DNA topoisomerase%2C type IIA%2C subunit B/N-terminal%3B ATPase-like%2C ATP-binding domain gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0003 Alide2_0004 Alide2_0004 Alide2_0004 5524 6156 + hypothetical protein gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0004 Alide2_0005 Alide2_0005 Alide2_0005 6147 7277 - helix-turn-helix domain protein manually curated~PFAM: Helix-turn-helix type 3~KEGG: sbl:Sbal_4355 XRE family transcriptional regulator~SMART: Helix-turn-helix type 3 gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0005 Alide2_0006 Alide2_0006 Alide2_0006 7771 8685 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0006 Alide2_0007 Alide2_0007 Alide2_0007 8682 9005 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0007 Alide2_0008 Alide2_0008 Alide2_0008 9272 9736 - hypothetical protein KEGG: cyp:PCC8801_1290 hypothetical protein gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0008 Alide2_0009 Alide2_0009 Alide2_0009 10466 10879 + protein of unknown function UPF0153 PFAM: Uncharacterised protein family UPF0153~KEGG: dia:Dtpsy_0006 protein of unknown function UPF0153 gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0009 Alide2_0010 Alide2_0010 Alide2_0010 10904 12097 - Formyl-CoA transferase KEGG: reh:H16_A2137 acyl-CoA transferase/carnitine dehydratase~PFAM: CoA-transferase family III gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0010 Alide2_0011 Alide2_0011 Alide2_0011 12107 12964 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: reh:H16_A2138 enoyl-CoA hydratase/carnithine racemase gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0011 Alide2_0012 Alide2_0012 Alide2_0012 13018 13860 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: reh:H16_A2139 LysR family transcriptional regulator gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0012 Alide2_0013 Alide2_0013 Alide2_0013 13857 14879 - extra-cytoplasmic solute receptor KEGG: reh:H16_A2140 extra-cytoplasmic solute receptor gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0013 Alide2_0014 Alide2_0014 Alide2_0014 14914 16686 - protein of unknown function DUF1446 PFAM: Protein of unknown function DUF1446~KEGG: reh:H16_A2141 hypothetical protein gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0014 Alide2_0015 Alide2_0015 Alide2_0015 16683 18701 - Methylcrotonoyl-CoA carboxylase PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal%3B Biotin carboxylase%2C C-terminal%3B Biotin/lipoyl attachment~KEGG: xtr:100489724 acetyl-/propionyl-coenzyme A carboxylase alpha chain-like~SMART: Biotin carboxylase%2C C-terminal gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0015 Alide2_0016 Alide2_0016 Alide2_0016 18718 19881 - Isovaleryl-CoA dehydrogenase KEGG: reh:H16_A2143 acyl-CoA dehydrogenase%2C long-chain specific~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0016 Alide2_0017 Alide2_0017 Alide2_0017 20013 21623 - Methylcrotonoyl-CoA carboxylase KEGG: reh:H16_A2144 propionyl-CoA carboxylase beta chain~PFAM: Carboxyl transferase gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0017 Alide2_0018 Alide2_0018 Alide2_0018 21735 22040 - acylphosphatase PFAM: Acylphosphatase-like~KEGG: ajs:Ajs_4152 acylphosphatase gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0018 Alide2_0019 Alide2_0019 Alide2_0019 22068 22352 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S binding domain~KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0019 Alide2_0020 Alide2_0020 Alide2_0020 22670 24055 + homoserine dehydrogenase PFAM: Homoserine dehydrogenase%2C catalytic%3B Aspartate/homoserine dehydrogenase%2C NAD-binding~KEGG: ajs:Ajs_4155 homoserine dehydrogenase gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0020 Alide2_0021 Alide2_0021 Alide2_0021 24215 26389 + DEAD_2 domain protein KEGG: ajs:Ajs_4158 ATP-dependent DNA helicase DinG~PFAM: DEAD2%3B DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal~SMART: Helicase%2C ATP-dependent%2C c2 type%3B DEAD-like helicase%2C N-terminal gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0021 Alide2_0022 Alide2_0022 Alide2_0022 26402 27031 + DNA-directed DNA polymerase PFAM: Exonuclease%2C RNase T/DNA polymerase III~KEGG: ajs:Ajs_4160 DNA polymerase III%2C epsilon subunit~SMART: Exonuclease gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0022 Alide2_0023 Alide2_0023 Alide2_0023 27098 27577 + NLP/P60 protein PFAM: NLP/P60~KEGG: ajs:Ajs_0001 NLP/P60 protein gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0023 Alide2_0024 Alide2_0024 Alide2_0024 27616 28719 + phospho-2-dehydro-3-deoxyheptonate aldolase TIGRFAM: DHAP synthase%2C class 1~KEGG: ajs:Ajs_0002 phospho-2-dehydro-3-deoxyheptonate aldolase~PFAM: DAHP synthetase I/KDSA gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0024 Alide2_0025 Alide2_0025 Alide2_0025 29312 32932 + diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B PAS fold%3B Diguanylate cyclase%2C predicted%3B GAF~KEGG: dia:Dtpsy_0021 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS%3B PAC motif%3B GAF gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0025 Alide2_0026 Alide2_0026 Alide2_0026 32999 33802 - transcriptional regulator%2C IclR family KEGG: dia:Dtpsy_0022 transcriptional regulator%2C IclR family~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0026 Alide2_0027 Alide2_0027 Alide2_0027 33989 34960 + hypothetical protein KEGG: ajs:Ajs_0005 hypothetical protein gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0027 Alide2_0028 Alide2_0028 Alide2_0028 34971 35999 - acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal~KEGG: axy:AXYL_04409 acyl-CoA dehydrogenase%2C C-terminal domain-containing protein 1 gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0028 Alide2_0029 Alide2_0029 Alide2_0029 36004 37191 - acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal~KEGG: axy:AXYL_04410 acyl-CoA dehydrogenase%2C middle domain-containing protein 12 gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0029 Alide2_0030 Alide2_0030 Alide2_0030 37238 38203 - extra-cytoplasmic solute receptor family protein 110 KEGG: axy:AXYL_04411 extra-cytoplasmic solute receptor family protein 110 gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0030 Alide2_0031 Alide2_0031 Alide2_0031 38241 40334 - CoA-binding domain protein KEGG: rme:Rmet_0842 CoA-binding~PFAM: CoA-binding%3B ATP-grasp fold%2C succinyl-CoA synthetase-type~SMART: CoA-binding gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0031 Alide2_0032 Alide2_0032 Alide2_0032 40349 41149 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: rme:Rmet_0841 enoyl-CoA hydratase gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0032 Alide2_0033 Alide2_0033 Alide2_0033 41244 42008 + transcriptional regulator%2C IclR family KEGG: bpt:Bpet3285 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0033 Alide2_0034 Alide2_0034 Alide2_0034 42268 42873 - Lipid A 3-O-deacylase-related protein PFAM: Lipid A 3-O-deacylase-related~KEGG: dia:Dtpsy_0024 hypothetical protein gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0034 Alide2_0035 Alide2_0035 Alide2_0035 42988 43581 - protein of unknown function DUF1520 PFAM: Domain of unknown function DUF1520~KEGG: ajs:Ajs_0007 hypothetical protein gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0035 Alide2_0036 Alide2_0036 Alide2_0036 43798 44739 + exonuclease RdgC PFAM: Putative exonuclease%2C RdgC~KEGG: ajs:Ajs_0008 recombination associated protein gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0036 Alide2_0037 Alide2_0037 Alide2_0037 44759 46012 + nucleoside recognition domain protein PFAM: Nucleoside recognition~KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0037 Alide2_0038 Alide2_0038 Alide2_0038 46499 46750 + hypothetical protein KEGG: dia:Dtpsy_0031 hypothetical protein gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0038 Alide2_0039 Alide2_0039 Alide2_0039 46719 48596 - hypothetical protein KEGG: blt:Balat_0053 beta-galactosidase I gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0039 Alide2_0040 Alide2_0040 Alide2_0040 48694 49131 - transcriptional regulator%2C MerR family TIGRFAM: Cu(I)-responsive transcriptional regulator~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~KEGG: dia:Dtpsy_0035 transcriptional regulator%2C MerR family~SMART: HTH transcriptional regulator%2C MerR gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0040 Alide2_0041 Alide2_0041 Alide2_0041 49128 49325 - Heavy metal transport/detoxification protein PFAM: Heavy metal transport/detoxification protein~KEGG: dia:Dtpsy_0036 heavy metal transport/detoxification protein gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0041 Alide2_0042 Alide2_0042 Alide2_0042 49495 51726 + heavy metal translocating P-type ATPase TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P type%2C cation/copper-transporter%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: dia:Dtpsy_0037 heavy metal translocating P-type ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase-like hydrolase gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0042 Alide2_0043 Alide2_0043 Alide2_0043 51853 53502 + methyl-accepting chemotaxis sensory transducer KEGG: ajs:Ajs_0020 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0043 Alide2_0044 Alide2_0044 Alide2_0044 53658 56753 - heavy metal efflux pump%2C CzcA family KEGG: aav:Aave_0038 CzcA family heavy metal efflux protein~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0044 Alide2_0045 Alide2_0045 Alide2_0045 56750 57991 - efflux transporter%2C RND family%2C MFP subunit TIGRFAM: Secretion protein HlyD~KEGG: aav:Aave_0039 RND family efflux transporter MFP subunit gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0045 Alide2_0046 Alide2_0046 Alide2_0046 58023 59264 - outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: xtr:100485479 hypothetical protein LOC100485479 gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0046 Alide2_0047 Alide2_0047 Alide2_0047 59397 60122 + two component transcriptional regulator%2C winged helix family KEGG: aav:Aave_0041 two component transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0047 Alide2_0048 Alide2_0048 Alide2_0048 60119 61546 + integral membrane sensor signal transduction histidine kinase KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Two-component sensor kinase N-terminal%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0048 Alide2_0049 Alide2_0049 Alide2_0049 61572 62687 - 12-oxophytodienoate reductase KEGG: dia:Dtpsy_0040 NADH:flavin oxidoreductase/NADH oxidase~PFAM: NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0049 Alide2_0050 Alide2_0050 Alide2_0050 62750 63358 - Glutathione S-transferase domain protein PFAM: Glutathione S-transferase%2C C-terminal%3B Glutathione S-transferase%2C N-terminal~KEGG: dia:Dtpsy_0042 glutathione S-transferase domain protein gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0050 Alide2_0051 Alide2_0051 Alide2_0051 63391 63687 - protein of unknown function UPF0153 PFAM: Uncharacterised protein family UPF0153~KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153 gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0051 Alide2_0052 Alide2_0052 Alide2_0052 63694 64272 - NADPH-dependent FMN reductase PFAM: NADPH-dependent FMN reductase~KEGG: dia:Dtpsy_0044 NADPH-dependent FMN reductase gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0052 Alide2_0053 Alide2_0053 Alide2_0053 64350 66383 + glucose inhibited division protein A KEGG: dia:Dtpsy_0045 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA~TIGRFAM: Glucose-inhibited division protein A~PFAM: Glucose-inhibited division protein A-related gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0053 Alide2_0054 Alide2_0054 Alide2_0054 66367 66606 + hypothetical protein KEGG: pct:PC1_0787 hypothetical protein gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0054 Alide2_0055 Alide2_0055 Alide2_0055 66599 67246 + methyltransferase GidB KEGG: dia:Dtpsy_0046 16S rRNA methyltransferase GidB~TIGRFAM: rRNA small subunit methyltransferase G~PFAM: rRNA small subunit methyltransferase G gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0055 Alide2_0056 Alide2_0056 Alide2_0056 67283 67897 + Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: dia:Dtpsy_0047 lysine exporter protein (LysE/YggA) gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0056 Alide2_0057 Alide2_0057 Alide2_0057 67906 68676 + Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: dia:Dtpsy_0048 cobyrinic acid ac-diamide synthase gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0057 Alide2_0058 Alide2_0058 Alide2_0058 68761 69303 + protein of unknown function DUF1234 PFAM: Protein of unknown function DUF1234~KEGG: ajs:Ajs_0030 hypothetical protein gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0058 Alide2_0059 Alide2_0059 Alide2_0059 69309 70226 + parB-like partition protein TIGRFAM: ParB-like partition protein~PFAM: ParB-like nuclease~KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein~SMART: ParB-like nuclease gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0059 Alide2_0060 Alide2_0060 Alide2_0060 70251 71030 + methyltransferase type 12 KEGG: ajs:Ajs_0032 methyltransferase type 12 gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0060 Alide2_0061 Alide2_0061 Alide2_0061 71090 72130 + Peptidoglycan-binding domain 1 protein PFAM: Peptidoglycan binding-like~KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0061 Alide2_0062 Alide2_0062 Alide2_0062 72210 73115 - AraC protein arabinose-binding/dimerization KEGG: dia:Dtpsy_0054 transcriptional regulator%2C AraC family~PFAM: HTH transcriptional regulator%2C AraC%2C arabinose-binding/dimerisation~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0062 Alide2_0063 Alide2_0063 Alide2_0063 73175 74440 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: dia:Dtpsy_0055 major facilitator superfamily MFS_1 gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0063 Alide2_0064 Alide2_0064 Alide2_0064 74442 75251 - MscS Mechanosensitive ion channel PFAM: Mechanosensitive ion channel MscS~KEGG: bpy:Bphyt_0752 MscS mechanosensitive ion channel gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0064 Alide2_0065 Alide2_0065 Alide2_0065 75330 75425 + hypothetical protein gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0065 Alide2_0066 Alide2_0066 Alide2_0066 75450 76874 - D-lactate dehydrogenase (cytochrome) KEGG: ajs:Ajs_0040 fis family transcriptional regulator~PFAM: FAD-linked oxidase%2C C-terminal%3B FAD linked oxidase%2C N-terminal gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0066 Alide2_0067 Alide2_0067 Alide2_0067 76968 77204 - calcium-binding EF-hand-containing protein KEGG: dia:Dtpsy_0062 calcium-binding EF-hand-containing protein gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0067 Alide2_0068 Alide2_0068 Alide2_0068 77362 77937 + ATP/cobalamin adenosyltransferase TIGRFAM: Adenosylcobalamin biosynthesis%2C ATP:cob(I)alamin adenosyltransferase%2C PduO-type%2C N-terminal~KEGG: dia:Dtpsy_0063 ATP/cobalamin adenosyltransferase~PFAM: Adenosylcobalamin biosynthesis%2C ATP:cob(I)alamin adenosyltransferase%2C EutT/PduO type gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0068 Alide2_0069 Alide2_0069 Alide2_0069 77998 78420 - phenylacetic acid degradation-related protein KEGG: ajs:Ajs_0044 hypothetical protein~TIGRFAM: Phenylacetic acid degradation-related protein~PFAM: Thioesterase superfamily gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0069 Alide2_0070 Alide2_0070 Alide2_0070 78503 79969 - succinate CoA transferase TIGRFAM: Succinate CoA transferase~KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase~PFAM: Acetyl-CoA hydrolase/transferase gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0070 Alide2_0071 Alide2_0071 Alide2_0071 80181 80903 + hypothetical protein KEGG: dia:Dtpsy_0067 hypothetical protein gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0071 Alide2_0072 Alide2_0072 Alide2_0072 80958 81872 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: rme:Rmet_5369 putative LysR family transcriptional regulator gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0072 Alide2_0073 Alide2_0073 Alide2_0073 81997 83007 + hypothetical protein KEGG: reu:Reut_B4598 hypothetical protein gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0073 Alide2_0074 Alide2_0074 Alide2_0074 83056 83862 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: bbr:BB2766 putative short chain dehydrogenase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0074 Alide2_0075 Alide2_0075 Alide2_0075 83864 84625 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: vap:Vapar_0736 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0075 Alide2_0076 Alide2_0076 Alide2_0076 84657 85172 + Carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase~KEGG: axy:AXYL_01971 carboxymuconolactone decarboxylase family protein 2 gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0076 Alide2_0077 Alide2_0077 Alide2_0077 85179 86465 - uracil-xanthine permease KEGG: ajs:Ajs_0048 uracil-xanthine permease~TIGRFAM: Xanthine/uracil permease~PFAM: Xanthine/uracil/vitamin C permease gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0077 Alide2_0078 Alide2_0078 Alide2_0078 86617 87327 + methyltransferase FkbM family TIGRFAM: Methyltransferase FkbM~KEGG: sna:Snas_6312 methyltransferase FkbM family gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0078 Alide2_0079 Alide2_0079 Alide2_0079 87454 88722 - Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family KEGG: ajs:Ajs_0052 hypothetical protein~TIGRFAM: Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6~PFAM: Monooxygenase%2C FAD-binding gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0079 Alide2_0080 Alide2_0080 Alide2_0080 88892 90967 + acetoacetyl-CoA synthase TIGRFAM: Acetoacetyl-CoA synthase~KEGG: dia:Dtpsy_0074 acetoacetyl-CoA synthetase~PFAM: AMP-dependent synthetase/ligase gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0080 Alide2_0081 Alide2_0081 Alide2_0081 90999 91928 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_0055 LysR family transcriptional regulator gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0081 Alide2_0082 Alide2_0082 Alide2_0082 92044 93030 + hypothetical protein KEGG: ajs:Ajs_0056 hypothetical protein gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0082 Alide2_0083 Alide2_0083 Alide2_0083 93056 94213 + Isovaleryl-CoA dehydrogenase KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain-containing protein~PFAM: Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA oxidase/dehydrogenase%2C type 1 gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0083 Alide2_0084 Alide2_0084 Alide2_0084 94233 95258 + acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1~KEGG: ajs:Ajs_0062 acyl-CoA dehydrogenase domain-containing protein gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0084 Alide2_0085 Alide2_0085 Alide2_0085 95364 96152 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: ajs:Ajs_0063 enoyl-CoA hydratase gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0085 Alide2_0086 Alide2_0086 Alide2_0086 96182 96805 + CDP-diacylglycerol/serine O-phosphatidyltransferase manually curated~TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase~KEGG: dia:Dtpsy_0083 CDP-diacylglycerol/serine O-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0086 Alide2_0087 Alide2_0087 Alide2_0087 97041 98677 + pseudogene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0087 Alide2_0088 Alide2_0088 Alide2_0088 98704 99254 + pseudogene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0088 Alide2_0089 Alide2_0089 Alide2_0089 99251 99466 + hypothetical protein KEGG: rpt:Rpal_2080 hypothetical protein gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0089 Alide2_0090 Alide2_0090 Alide2_0090 99634 100413 + septum site-determining protein minC TIGRFAM: Septum formation inhibitor MinC~HAMAP: Septum formation inhibitor MinC~KEGG: dia:Dtpsy_0084 septum site-determining protein MinC~PFAM: Septum formation inhibitor MinC%2C C-terminal%3B Septum formation inhibitor MinC%2C N-terminal gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0090 Alide2_0091 Alide2_0091 Alide2_0091 100468 101283 + septum site-determining protein MinD KEGG: dia:Dtpsy_0085 septum site-determining protein MinD~TIGRFAM: Septum site-determining protein MinD~PFAM: Cobyrinic acid a%2Cc-diamide synthase gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0091 Alide2_0092 Alide2_0092 Alide2_0092 101290 101559 + cell division topological specificity factor MinE KEGG: dia:Dtpsy_0086 cell division topological specificity factor MinE~TIGRFAM: Septum formation topological specificity factor MinE~PFAM: Septum formation topological specificity factor MinE gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0092 Alide2_0093 Alide2_0093 Alide2_0093 101570 102508 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: pna:Pnap_1015 LysR family transcriptional regulator gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0093 Alide2_0094 Alide2_0094 Alide2_0094 102622 103599 + hypothetical protein KEGG: pol:Bpro_4513 hypothetical protein gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0094 Alide2_0095 Alide2_0095 Alide2_0095 103627 104790 + Galactonate dehydratase PFAM: Mandelate racemase/muconate lactonizing enzyme%2C N-terminal%3B Mandelate racemase/muconate lactonizing enzyme%2C C-terminal~KEGG: mes:Meso_4537 galactonate dehydratase~SMART: Mandelate racemase/muconate lactonizing enzyme%2C C-terminal gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0095 Alide2_0096 Alide2_0096 Alide2_0096 104808 105347 - flavin reductase domain protein FMN-binding protein manually curated~PFAM: Flavin reductase-like%2C FMN-binding~KEGG: ajs:Ajs_0068 flavin reductase domain-containing protein~SMART: Flavin reductase-like%2C FMN-binding gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0096 Alide2_0097 Alide2_0097 Alide2_0097 105454 106230 + alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: dia:Dtpsy_0088 alpha/beta hydrolase fold protein gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0097 Alide2_0098 Alide2_0098 Alide2_0098 106304 106969 + regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: ajs:Ajs_0073 TetR family transcriptional regulator gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0098 Alide2_0099 Alide2_0099 Alide2_0099 106917 107339 - UspA domain-containing protein PFAM: UspA~KEGG: ajs:Ajs_0074 UspA domain-containing protein gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0099 Alide2_0100 Alide2_0100 Alide2_0100 107441 108289 - metallophosphoesterase PFAM: Metallo-dependent phosphatase~KEGG: ajs:Ajs_0075 metallophosphoesterase gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0100 Alide2_0101 Alide2_0101 Alide2_0101 108316 109287 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_0076 LysR family transcriptional regulator gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0101 Alide2_0102 Alide2_0102 Alide2_0102 109413 109853 + hypothetical protein KEGG: ajs:Ajs_0077 hypothetical protein gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0102 Alide2_0103 Alide2_0103 Alide2_0103 109993 111861 - Phosphoenolpyruvate carboxykinase (GTP) KEGG: dac:Daci_0114 phosphoenolpyruvate carboxykinase~PFAM: Phosphoenolpyruvate carboxykinase%2C GTP-utilising gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0103 Alide2_0104 Alide2_0104 Alide2_0104 112202 112363 - hypothetical protein KEGG: dia:Dtpsy_0098 hypothetical protein gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0104 Alide2_0105 Alide2_0105 Alide2_0105 112453 113652 - threonine dehydratase KEGG: dia:Dtpsy_0099 threonine dehydratase~TIGRFAM: Threonine dehydratase II~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit%3B Amino acid-binding ACT gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0105 Alide2_0106 Alide2_0106 Alide2_0106 113755 115416 - acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain~KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain-containing protein gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0106 Alide2_0107 Alide2_0107 Alide2_0107 115472 118192 - magnesium-translocating P-type ATPase SMART: ATPase%2C P-type cation-transporter%2C N-terminal~TIGRFAM: ATPase%2C P-type%2C magnesium-translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B ATPase%2C P-type cation-transporter%2C N-terminal%3B Haloacid dehalogenase-like hydrolase%3B ATPase%2C P-type cation-transporter%2C C-terminal gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0107 Alide2_0108 Alide2_0108 Alide2_0108 118327 119358 - Methionine synthase KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent)~PFAM: Homocysteine S-methyltransferase gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0108 Alide2_0109 Alide2_0109 Alide2_0109 119355 120356 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: aav:Aave_0175 LysR family transcriptional regulator gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0109 Alide2_0110 Alide2_0110 Alide2_0110 120381 121544 - Butyryl-CoA dehydrogenase KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain-containing protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0110 Alide2_0111 Alide2_0111 Alide2_0111 121541 121924 - Cupin 2 conserved barrel domain protein PFAM: Cupin 2%2C conserved barrel~KEGG: aav:Aave_0177 cupin 2 domain-containing protein gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0111 Alide2_0112 Alide2_0112 Alide2_0112 121941 122906 - hypothetical protein KEGG: xtr:100487983 UPF0065 protein in clcB-clcD intergenic region-like gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0112 Alide2_0113 Alide2_0113 Alide2_0113 123164 125032 + ATP-dependent DNA helicase RecQ TIGRFAM: DNA helicase%2C ATP-dependent%2C RecQ type%2C bacterial%3B DNA helicase%2C ATP-dependent%2C RecQ type~PFAM: RQC domain%3B Helicase%2C C-terminal%3B DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase/RNase D C-terminal%2C HRDC domain~KEGG: dia:Dtpsy_0103 ATP-dependent DNA helicase RecQ~SMART: RQC domain%3B Helicase%2C C-terminal%3B DEAD-like helicase%2C N-terminal%3B Helicase/RNase D C-terminal%2C HRDC domain gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0113 Alide2_0114 Alide2_0114 Alide2_0114 125036 125716 - anaerobic ribonucleoside-triphosphate reductase activating protein KEGG: ajs:Ajs_0085 anaerobic ribonucleoside-triphosphate reductase activating protein~TIGRFAM: Ribonucleoside-triphosphate reductase%2C anaerobic-like~PFAM: Radical SAM gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0114 Alide2_0115 Alide2_0115 Alide2_0115 125694 125894 - hypothetical protein KEGG: dia:Dtpsy_0105 hypothetical protein gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0115 Alide2_0116 Alide2_0116 Alide2_0116 125977 128007 - anaerobic ribonucleoside-triphosphate reductase KEGG: dia:Dtpsy_0106 anaerobic ribonucleoside triphosphate reductase~TIGRFAM: Ribonucleoside-triphosphate reductase%2C anaerobic~PFAM: ATP-cone gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0116 Alide2_0117 Alide2_0117 Alide2_0117 128132 131434 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS fold%3B PAS fold-4~KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAC motif%3B PAS gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0117 Alide2_0118 Alide2_0118 Alide2_0118 131720 132148 - Hemerythrin HHE cation binding domain protein PFAM: Haemerythrin/HHE cation-binding motif~KEGG: dia:Dtpsy_0108 hemerythrin HHE cation binding domain-containing protein gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0118 Alide2_0119 Alide2_0119 Alide2_0119 132218 134527 - nitric oxide reductase large subunit KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0119 Alide2_0120 Alide2_0120 Alide2_0120 134679 136280 + sigma54 specific transcriptional regulator%2C Fis family KEGG: dia:Dtpsy_0110 anaerobic nitric oxide reductase transcription regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Helix-turn-helix%2C Fis-type~SMART: ATPase%2C AAA+ type%2C core gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0120 Alide2_0121 Alide2_0121 Alide2_0121 136333 136995 - Domain of unknown function DUF1794 PFAM: Domain of unknown function DUF1794~KEGG: ctt:CtCNB1_2843 hypothetical protein gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0121 Alide2_0122 Alide2_0122 Alide2_0122 137233 138621 + L-serine dehydratase 1 TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form~KEGG: dia:Dtpsy_0112 L-serine dehydratase 1~PFAM: Serine dehydratase-like%2C alpha subunit%3B Serine dehydratase beta chain gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0122 Alide2_0123 Alide2_0123 Alide2_0123 138753 139703 + protein bugT-like protein KEGG: xtr:100490070 protein bugT-like gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0123 Alide2_0124 Alide2_0124 Alide2_0124 139708 141282 + o-succinylbenzoate--CoA ligase KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0124 Alide2_0125 Alide2_0125 Alide2_0125 141300 142292 + hypothetical protein KEGG: ajs:Ajs_0099 hypothetical protein gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0125 Alide2_0126 Alide2_0126 Alide2_0126 142305 142760 + phenylacetic acid degradation-related protein KEGG: dia:Dtpsy_0117 thioesterase superfamily protein~TIGRFAM: Phenylacetic acid degradation-related protein~PFAM: Thioesterase superfamily gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0126 Alide2_0127 Alide2_0127 Alide2_0127 142782 143792 - hypothetical protein KEGG: dia:Dtpsy_0118 hypothetical protein gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0127 Alide2_0128 Alide2_0128 Alide2_0128 143832 144818 - hypothetical protein KEGG: dia:Dtpsy_0119 hypothetical protein gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0128 Alide2_0129 Alide2_0129 Alide2_0129 144851 146005 - Long-chain-acyl-CoA dehydrogenase KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain-containing protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0129 Alide2_0130 Alide2_0130 Alide2_0130 146081 147628 - o-succinylbenzoate--CoA ligase KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0130 Alide2_0131 Alide2_0131 Alide2_0131 147834 149012 + acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: dia:Dtpsy_0122 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0131 Alide2_0132 Alide2_0132 Alide2_0132 149068 149835 + 3-hydroxy-2-methylbutyryl-CoA dehydrogenase KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0132 Alide2_0133 Alide2_0133 Alide2_0133 149904 150902 + hypothetical protein KEGG: dia:Dtpsy_0125 hypothetical protein gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0133 Alide2_0134 Alide2_0134 Alide2_0134 150912 151718 + 2%2C4-dienoyl-CoA reductase (NADPH) KEGG: ajs:Ajs_0109 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0134 Alide2_0135 Alide2_0135 Alide2_0135 151715 151819 + hypothetical protein gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0135 Alide2_0136 Alide2_0136 Alide2_0136 151856 152635 + transcriptional regulator%2C IclR family KEGG: dia:Dtpsy_0128 transcriptional regulator%2C IclR family~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0136 Alide2_0137 Alide2_0137 Alide2_0137 152730 153839 + Alpha-methylacyl-CoA racemase KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0137 Alide2_0138 Alide2_0138 Alide2_0138 153943 154359 - protein of unknown function DUF35 PFAM: Domain of unknown function DUF35%2C OB-fold%2C C-terminal~KEGG: reh:H16_A2147 hypothetical protein gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0138 Alide2_0139 Alide2_0139 Alide2_0139 154361 155521 - acetyl-CoA acetyltransferase KEGG: reh:H16_A2148 acetyl-CoA acetyltransferase gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0139 Alide2_0140 Alide2_0140 Alide2_0140 155544 156701 - Long-chain-acyl-CoA dehydrogenase KEGG: reh:H16_A2149 acyl-CoA dehydrogenase%2C long-chain specific~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0140 Alide2_0141 Alide2_0141 Alide2_0141 156736 158277 - o-succinylbenzoate--CoA ligase KEGG: reh:H16_A2150 long-chain-fatty-acid--CoA ligase~PFAM: AMP-dependent synthetase/ligase gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0141 Alide2_0142 Alide2_0142 Alide2_0142 158264 159199 - 3-alpha%2C7-alpha%2C12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase KEGG: reh:H16_A2151 putative acyl dehydratase~PFAM: MaoC-like dehydratase gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0142 Alide2_0143 Alide2_0143 Alide2_0143 159217 160140 - 3-hydroxyacyl-CoA dehydrogenase KEGG: reh:H16_A2152 short chain dehydrogenase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0143 Alide2_0144 Alide2_0144 Alide2_0144 160166 161149 - extra-cytoplasmic solute receptor KEGG: reh:H16_A2153 extra-cytoplasmic solute receptor gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0144 Alide2_0145 Alide2_0145 Alide2_0145 161379 162164 + transcriptional regulator%2C IclR family KEGG: reh:H16_A2154 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C C-terminal%3B Transcription regulator IclR%2C N-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0145 Alide2_0146 Alide2_0146 Alide2_0146 162184 163440 - major facilitator superfamily MFS_1 KEGG: ajs:Ajs_0113 major facilitator superfamily transporter~manually curated~PFAM: Major facilitator superfamily MFS-1 gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0146 Alide2_0147 Alide2_0147 Alide2_0147 163481 164344 - Citryl-CoA lyase KEGG: dia:Dtpsy_0131 HpcH/HpaI aldolase~PFAM: Aldehyde-lyase domain gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0147 Alide2_0148 Alide2_0148 Alide2_0148 164377 165372 - hypothetical protein KEGG: dia:Dtpsy_0133 hypothetical protein gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0148 Alide2_0149 Alide2_0149 Alide2_0149 165446 166831 - MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: dia:Dtpsy_0134 MmgE/PrpD family protein gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0149 Alide2_0150 Alide2_0150 Alide2_0150 166882 168063 - Formyl-CoA transferase KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0150 Alide2_0151 Alide2_0151 Alide2_0151 168074 169240 - Isovaleryl-CoA dehydrogenase KEGG: dac:Daci_0198 acyl-CoA dehydrogenase domain-containing protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0151 Alide2_0152 Alide2_0152 Alide2_0152 169314 170198 - hypothetical protein KEGG: dia:Dtpsy_0137 hypothetical protein gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0152 Alide2_0153 Alide2_0153 Alide2_0153 170392 171309 + 3-hydroxyacyl-CoA dehydrogenase KEGG: dia:Dtpsy_0138 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0153 Alide2_0154 Alide2_0154 Alide2_0154 171313 172206 + 3-alpha%2C7-alpha%2C12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase KEGG: ajs:Ajs_0121 dehydratase~PFAM: MaoC-like dehydratase gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0154 Alide2_0155 Alide2_0155 Alide2_0155 172289 173083 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: dia:Dtpsy_0140 enoyl-CoA hydratase/isomerase gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0155 Alide2_0156 Alide2_0156 Alide2_0156 173220 174503 + acetyl-CoA hydrolase/transferase PFAM: Acetyl-CoA hydrolase/transferase~KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0156 Alide2_0157 Alide2_0157 Alide2_0157 174570 175778 + acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: ajs:Ajs_0124 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0157 Alide2_0158 Alide2_0158 Alide2_0158 175793 176716 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_0188 LysR family transcriptional regulator gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0158 Alide2_0159 Alide2_0159 Alide2_0159 176894 178078 + Formyl-CoA transferase KEGG: dac:Daci_0189 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0159 Alide2_0160 Alide2_0160 Alide2_0160 178093 179118 + NADPH:quinone reductase PFAM: Alcohol dehydrogenase%2C C-terminal%3B Alcohol dehydrogenase GroES-like~KEGG: dac:Daci_0190 alcohol dehydrogenase~SMART: Polyketide synthase%2C enoylreductase gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0160 Alide2_0161 Alide2_0161 Alide2_0161 179115 180140 + hypothetical protein KEGG: xtr:100498142 UPF0065 protein in clcB-clcD intergenic region-like gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0161 Alide2_0162 Alide2_0162 Alide2_0162 180171 181079 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: aav:Aave_3679 LysR family transcriptional regulator gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0162 Alide2_0163 Alide2_0163 Alide2_0163 181189 182172 + hypothetical protein KEGG: aav:Aave_3678 hypothetical protein gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0163 Alide2_0164 Alide2_0164 Alide2_0164 182169 183368 + amidohydrolase TIGRFAM: Peptidase M20D%2C amidohydrolase~KEGG: aav:Aave_3677 amidohydrolase~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0164 Alide2_0165 Alide2_0165 Alide2_0165 183548 184528 + hypothetical protein KEGG: ajs:Ajs_0125 hypothetical protein gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0165 Alide2_0166 Alide2_0166 Alide2_0166 184530 186038 + o-succinylbenzoate--CoA ligase KEGG: dac:Daci_0186 AMP-dependent synthetase/ligase~PFAM: AMP-dependent synthetase/ligase gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0166 Alide2_0167 Alide2_0167 Alide2_0167 186056 187039 + hypothetical protein KEGG: xtr:100497979 hypothetical protein LOC100497979 gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0167 Alide2_0168 Alide2_0168 Alide2_0168 187094 188095 - extra-cytoplasmic solute receptor KEGG: reh:H16_B1474 extra-cytoplasmic solute receptor gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0168 Alide2_0169 Alide2_0169 Alide2_0169 188116 189297 - amidohydrolase PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation~manually curated~KEGG: reu:Reut_B4300 peptidase M20D%2C amidohydrolase~TIGRFAM: Peptidase M20D%2C amidohydrolase gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0169 Alide2_0170 Alide2_0170 Alide2_0170 189562 189981 + protein of unknown function DUF35 PFAM: Domain of unknown function DUF35%2C OB-fold%2C C-terminal%3B Domain of unknown function DUF35%2C rubredoxin-like zinc ribbon domain%2C N-terminal~KEGG: ajs:Ajs_0128 hypothetical protein gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0170 Alide2_0171 Alide2_0171 Alide2_0171 189978 191186 + Thiolase domain-containing protein PFAM: Thiolase%2C C-terminal~KEGG: ajs:Ajs_0129 thiolase gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0171 Alide2_0172 Alide2_0172 Alide2_0172 191206 192363 + Butyryl-CoA dehydrogenase KEGG: dia:Dtpsy_0148 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0172 Alide2_0173 Alide2_0173 Alide2_0173 192360 192791 + phenylacetic acid degradation-related protein KEGG: dac:Daci_0175 thioesterase superfamily protein~TIGRFAM: Phenylacetic acid degradation-related protein~PFAM: Thioesterase superfamily gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0173 Alide2_0174 Alide2_0174 Alide2_0174 192788 193537 - transcriptional regulator%2C IclR family KEGG: vei:Veis_2216 regulatory proteins%2C IclR~PFAM: Transcription regulator IclR%2C N-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0174 Alide2_0175 Alide2_0175 Alide2_0175 193668 194654 + hypothetical protein KEGG: vei:Veis_2212 hypothetical protein gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0175 Alide2_0176 Alide2_0176 Alide2_0176 194651 195511 + Trans-2-enoyl-CoA reductase (NADPH) KEGG: vei:Veis_2211 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0176 Alide2_0177 Alide2_0177 Alide2_0177 195511 196659 + Isovaleryl-CoA dehydrogenase KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase%2C C-terminal:acyl-CoA dehydrogenase%2C central region:acyl-CoA dehydrogenase%2C N-terminal~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0177 Alide2_0178 Alide2_0178 Alide2_0178 196709 198328 + Methylcrotonoyl-CoA carboxylase KEGG: axy:AXYL_05145 methylcrotonoyl-CoA carboxylase subunit beta~PFAM: Carboxyl transferase gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0178 Alide2_0179 Alide2_0179 Alide2_0179 198339 199502 + Isovaleryl-CoA dehydrogenase KEGG: reu:Reut_B4462 acyl-CoA dehydrogenase%2C C-terminal:acyl-CoA dehydrogenase%2C central region:acyl-CoA dehydrogenase%2C N-terminal~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0179 Alide2_0180 Alide2_0180 Alide2_0180 199504 200325 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: vei:Veis_2207 enoyl-CoA hydratase/isomerase gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0180 Alide2_0181 Alide2_0181 Alide2_0181 200339 202333 + Methylcrotonoyl-CoA carboxylase PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal%3B Biotin carboxylase%2C C-terminal%3B Biotin/lipoyl attachment~KEGG: reu:Reut_B4460 carbamoyl-phosphate synthase subunit L~SMART: Biotin carboxylase%2C C-terminal gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0181 Alide2_0182 Alide2_0182 Alide2_0182 202330 204144 + protein of unknown function DUF1446 PFAM: Protein of unknown function DUF1446~KEGG: reu:Reut_B4459 hypothetical protein gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0182 Alide2_0183 Alide2_0183 Alide2_0183 204168 205148 + extra-cytoplasmic solute receptor family protein 140 KEGG: axy:AXYL_05150 extra-cytoplasmic solute receptor family protein 140 gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0183 Alide2_0184 Alide2_0184 Alide2_0184 205156 206376 + Formyl-CoA transferase KEGG: vei:Veis_2206 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0184 Alide2_0185 Alide2_0185 Alide2_0185 206422 207339 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_0150 transcriptional regulator%2C LysR family gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0185 Alide2_0186 Alide2_0186 Alide2_0186 207449 208726 + Formyl-CoA transferase KEGG: dia:Dtpsy_0151 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0186 Alide2_0187 Alide2_0187 Alide2_0187 208778 209677 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ctt:CtCNB1_0218 transcriptional regulator%2C LysR family gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0187 Alide2_0188 Alide2_0188 Alide2_0188 209815 210828 + twin-arginine translocation pathway signal KEGG: ctt:CtCNB1_0219 twin-arginine translocation pathway signal gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0188 Alide2_0189 Alide2_0189 Alide2_0189 210960 212150 + Formyl-CoA transferase KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0189 Alide2_0190 Alide2_0190 Alide2_0190 212175 213467 - Glutamate dehydrogenase (NAD(P)(+)) PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal%3B Glutamate/phenylalanine/leucine/valine dehydrogenase%2C dimerisation domain~KEGG: dia:Dtpsy_0153 Glu/Leu/Phe/Val dehydrogenase~SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0190 Alide2_0191 Alide2_0191 Alide2_0191 213654 214103 + transmembrane pair domain-containing protein PFAM: Transmembrane pair%2C bacterial~KEGG: dia:Dtpsy_0156 transmembrane pair domain protein gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0191 Alide2_0192 Alide2_0192 Alide2_0192 214150 215085 + SdiA-regulated domain protein PFAM: SdiA-regulated~KEGG: psa:PST_0402 hypothetical protein gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0192 Alide2_0193 Alide2_0193 Alide2_0193 215213 217948 + methionine synthase TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase~KEGG: dac:Daci_0232 methionine synthase~PFAM: Vitamin B12-dependent methionine synthase%2C activation domain%3B Methionine synthase%2C cobalamin (vitamin B12)-binding module%2C cap%3B Cobalamin (vitamin B12)-binding%3B Pterin-binding gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0193 Alide2_0194 Alide2_0194 Alide2_0194 218107 221196 + CRISPR-associated protein%2C Csn1 family TIGRFAM: CRISPR-associated protein%2C SAG0894~KEGG: vei:Veis_1230 CRISPR-associated endonuclease Csn1 family protein gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0194 Alide2_0195 Alide2_0195 Alide2_0195 221202 222131 + CRISPR-associated protein Cas1 KEGG: vei:Veis_1231 CRISPR-associated Cas1 family protein~TIGRFAM: CRISPR-associated protein Cas1%2C NMENI subtype%3B CRISPR-associated protein Cas1~PFAM: CRISPR-associated protein Cas1 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0195 Alide2_0196 Alide2_0196 Alide2_0196 222174 222389 + CRISPR-associated protein Cas2 KEGG: vei:Veis_1232 CRISPR-associated Cas2 family protein~TIGRFAM: CRISPR associated protein Cas2~PFAM: Virulence-associated protein D / CRISPR associated protein Cas2 gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0196 Alide2_0197 Alide2_0197 Alide2_0197 222440 222700 + pseudogene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0197 Alide2_0198 Alide2_0198 Alide2_0198 222726 224240 - transposase IS66 PFAM: Transposase%2C IS66~KEGG: dia:Dtpsy_2523 transposase IS66 gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0198 Alide2_0199 Alide2_0199 Alide2_0199 224323 224655 - IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2-like~KEGG: rfr:Rfer_2710 IS66 Orf2 like gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0199 Alide2_0200 Alide2_0200 Alide2_0200 224652 225080 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: rfr:Rfer_2709 transposase IS3/IS911 gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0200 Alide2_0201 Alide2_0201 Alide2_0201 225118 226470 + pseudogene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0201 Alide2_0202 Alide2_0202 Alide2_0202 226463 227278 + IstB domain protein ATP-binding protein KEGG: mpt:Mpe_A2996 putative transposase~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0202 Alide2_0203 Alide2_0203 Alide2_0203 227344 227502 + pseudogene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0203 Alide2_0204 Alide2_0204 Alide2_0204 232822 233364 - Shikimate kinase KEGG: dia:Dtpsy_0168 shikimate kinase~PFAM: Shikimate kinase gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0204 Alide2_0205 Alide2_0205 Alide2_0205 233470 234369 + ribonuclease BN PFAM: Ribonuclease BN-related~KEGG: ajs:Ajs_0151 ribonuclease BN gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0205 Alide2_0206 Alide2_0206 Alide2_0206 234495 235211 + 17 kDa surface antigen PFAM: Rickettsia 17kDa surface antigen~KEGG: ajs:Ajs_0152 17 kDa surface antigen gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0206 Alide2_0207 Alide2_0207 Alide2_0207 235268 236041 - Ferredoxin--NADP(+) reductase KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase~PFAM: Oxidoreductase%2C FAD-binding domain%3B Oxidoreductase FAD/NAD(P)-binding gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0207 Alide2_0208 Alide2_0208 Alide2_0208 236234 237430 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dia:Dtpsy_0172 extracellular ligand-binding receptor gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0208 Alide2_0209 Alide2_0209 Alide2_0209 237447 239345 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: ajs:Ajs_0155 inner-membrane translocator gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0209 Alide2_0210 Alide2_0210 Alide2_0210 239342 240880 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: vei:Veis_0860 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0210 Alide2_0211 Alide2_0211 Alide2_0211 241028 243928 + peptidase C1A papain KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease~PFAM: Peptidase C1A%2C papain C-terminal~SMART: Peptidase C1A%2C papain C-terminal gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0211 Alide2_0212 Alide2_0212 Alide2_0212 244081 245114 - pseudogene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0212 Alide2_0213 Alide2_0213 Alide2_0213 245172 245550 - pseudogene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0213 Alide2_0214 Alide2_0214 Alide2_0214 245625 247160 - Mg chelatase%2C subunit ChlI TIGRFAM: Mg chelatase-related protein~PFAM: Magnesium chelatase%2C ChlI subunit~KEGG: dia:Dtpsy_0179 Mg chelatase%2C subunit ChlI~SMART: ATPase%2C AAA+ type%2C core gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0214 Alide2_0215 Alide2_0215 Alide2_0215 247299 248030 + Conserved hypothetical protein CHP02001 KEGG: dia:Dtpsy_0180 hypothetical protein~TIGRFAM: Conserved hypothetical protein CHP02001~PFAM: Conserved hypothetical protein CHP02001 gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0215 Alide2_0216 Alide2_0216 Alide2_0216 248050 248388 + nitrogen regulatory protein P-II KEGG: aav:Aave_0233 nitrogen regulatory protein P-II~PFAM: Nitrogen regulatory protein PII~SMART: Nitrogen regulatory protein PII gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0216 Alide2_0217 Alide2_0217 Alide2_0217 248411 249799 + ammonium transporter KEGG: ajs:Ajs_0164 ammonium transporter~TIGRFAM: Ammonium transporter~PFAM: Ammonium transporter gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0217 Alide2_0218 Alide2_0218 Alide2_0218 250530 250853 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0218 Alide2_0219 Alide2_0219 Alide2_0219 250850 251765 + pseudogene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0219 Alide2_0220 Alide2_0220 Alide2_0220 251794 252933 + pseudogene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0220 Alide2_0221 Alide2_0221 Alide2_0221 252923 253726 + IstB domain protein ATP-binding protein KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0221 Alide2_0222 Alide2_0222 Alide2_0222 253777 253902 - hypothetical protein gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0222 Alide2_0223 Alide2_0223 Alide2_0223 254064 254954 - 3-hydroxyisobutyrate dehydrogenase KEGG: esa:ESA_04058 hypothetical protein~PFAM: 6-phosphogluconate dehydrogenase%2C NAD-binding gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0223 Alide2_0224 Alide2_0224 Alide2_0224 254951 255811 - alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10 gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0224 Alide2_0225 Alide2_0225 Alide2_0225 255801 256151 - hypothetical protein KEGG: axy:AXYL_03188 hypothetical protein gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0225 Alide2_0226 Alide2_0226 Alide2_0226 256234 257301 - membrane protein AbrB duplication KEGG: vap:Vapar_4786 membrane protein AbrB duplication~TIGRFAM: AbrB duplication%2C membrane protein~PFAM: Putative ammonia monooxygenase gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0226 Alide2_0227 Alide2_0227 Alide2_0227 257304 258650 - pseudogene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0227 Alide2_0228 Alide2_0228 Alide2_0228 258805 259959 + Butyryl-CoA dehydrogenase KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0228 Alide2_0229 Alide2_0229 Alide2_0229 259983 260957 + hypothetical protein KEGG: vei:Veis_3320 hypothetical protein gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0229 Alide2_0230 Alide2_0230 Alide2_0230 260954 263029 + CoA-binding domain protein KEGG: dac:Daci_1885 CoA-binding domain-containing protein~PFAM: CoA-binding~SMART: CoA-binding gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0230 Alide2_0231 Alide2_0231 Alide2_0231 263103 264215 + FAD linked oxidase domain protein PFAM: FAD linked oxidase%2C N-terminal%3B FAD-linked oxidase%2C C-terminal~KEGG: dia:Dtpsy_0184 FAD linked oxidase domain protein gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0231 Alide2_0232 Alide2_0232 Alide2_0232 264218 264991 + protein of unknown function DUF1275 PFAM: Protein of unknown function DUF1275~KEGG: dia:Dtpsy_0185 protein of unknown function DUF1275 gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0232 Alide2_0233 Alide2_0233 Alide2_0233 265028 266266 + protein of unknown function DUF224 cysteine-rich region domain protein PFAM: Cysteine-rich domain%3B 4Fe-4S binding domain~KEGG: ajs:Ajs_0168 glycolate oxidase iron-sulfur subunit gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0233 Alide2_0234 Alide2_0234 Alide2_0234 266329 267171 + Fertility inhibition FinO-like protein KEGG: dia:Dtpsy_0187 ProQ activator of osmoprotectant transporter ProP~PFAM: Fertility inhibition FinO/ProQ~SMART: Fertility inhibition FinO/ProQ gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0234 Alide2_0235 Alide2_0235 Alide2_0235 267229 268113 - protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: ajs:Ajs_0174 hypothetical protein gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0235 Alide2_0236 Alide2_0236 Alide2_0236 268167 269444 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: dia:Dtpsy_0193 lysophospholipid transporter LplT gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0236 Alide2_0237 Alide2_0237 Alide2_0237 269588 270682 + Alanine racemase PFAM: Alanine racemase%2C N-terminal%3B Alanine racemase%2C C-terminal~TIGRFAM: Alanine racemase~HAMAP: Alanine racemase~KEGG: ajs:Ajs_0176 alanine racemase gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0237 Alide2_0238 Alide2_0238 Alide2_0238 270901 271920 + Cytochrome-c peroxidase KEGG: dia:Dtpsy_0196 cytochrome-c peroxidase~PFAM: Di-haem cytochrome c peroxidase%3B Cytochrome c%2C class I gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0238 Alide2_0239 Alide2_0239 Alide2_0239 272000 272614 - Glutathione S-transferase domain protein PFAM: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal~KEGG: dia:Dtpsy_0197 glutathione S-transferase domain protein gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0239 Alide2_0240 Alide2_0240 Alide2_0240 272745 274127 + DNA repair protein RadA TIGRFAM: DNA repair protein RadA~PFAM: Circadian clock protein KaiC/DNA repair protein RadA~KEGG: dia:Dtpsy_0199 DNA repair protein RadA~SMART: ATPase%2C AAA+ type%2C core gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0240 Alide2_0241 Alide2_0241 Alide2_0241 274131 275117 - hypothetical protein KEGG: rme:Rmet_1769 hypothetical protein gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0241 Alide2_0242 Alide2_0242 Alide2_0242 275142 276566 - Amidase PFAM: Amidase~KEGG: reh:H16_A1882 Asp-tRNA Asn / Glu-tRNA Gln amidotransferase A subunit or related amidase gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0242 Alide2_0243 Alide2_0243 Alide2_0243 276732 277148 + hypothetical protein KEGG: ajs:Ajs_0181 hypothetical protein gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0243 Alide2_0244 Alide2_0244 Alide2_0244 277193 278131 + branched-chain amino acid aminotransferase TIGRFAM: Branched-chain amino acid aminotransferase I~KEGG: ajs:Ajs_0182 branched-chain amino acid aminotransferase~PFAM: Aminotransferase%2C class IV gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0244 Alide2_0245 Alide2_0245 Alide2_0245 278139 278345 + hypothetical protein KEGG: ajs:Ajs_0183 hypothetical protein gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0245 Alide2_0246 Alide2_0246 Alide2_0246 278420 279772 + O-antigen polymerase PFAM: O-antigen ligase-related~KEGG: ajs:Ajs_0184 O-antigen polymerase gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0246 Alide2_0247 Alide2_0247 Alide2_0247 279765 280880 + glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: ajs:Ajs_0185 glycosyl transferase%2C group 1 gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0247 Alide2_0248 Alide2_0248 Alide2_0248 280877 281923 + glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: ajs:Ajs_0186 glycosyl transferase family protein gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0248 Alide2_0249 Alide2_0249 Alide2_0249 281920 282894 + hypothetical protein KEGG: ajs:Ajs_0187 hypothetical protein gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0249 Alide2_0250 Alide2_0250 Alide2_0250 282963 284027 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase%2C NPD~KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase%2C NPD gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0250 Alide2_0251 Alide2_0251 Alide2_0251 284024 284890 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_0189 LysR family transcriptional regulator gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0251 Alide2_0252 Alide2_0252 Alide2_0252 284946 286175 + protein of unknown function DUF1228 PFAM: Domain of unknown function DUF1228~KEGG: dia:Dtpsy_0209 protein of unknown function DUF1228 gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0252 Alide2_0253 Alide2_0253 Alide2_0253 286179 286898 - MOSC domain containing protein PFAM: Molybdenum cofactor sulfurase%2C C-terminal~KEGG: dia:Dtpsy_0210 MOSC domain containing protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0253 Alide2_0254 Alide2_0254 Alide2_0254 286895 287455 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant~KEGG: dia:Dtpsy_0211 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0254 Alide2_0255 Alide2_0255 Alide2_0255 287474 287968 - Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase homologue 1-like~KEGG: oca:OCAR_5014 activator of HSP90 ATPase 1 family protein gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0255 Alide2_0256 Alide2_0256 Alide2_0256 288068 288529 - MaoC domain protein dehydratase PFAM: MaoC-like dehydratase~KEGG: dac:Daci_0013 dehydratase gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0256 Alide2_0257 Alide2_0257 Alide2_0257 288551 289522 - hypothetical protein KEGG: dac:Daci_0012 hypothetical protein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0257 Alide2_0258 Alide2_0258 Alide2_0258 289676 290605 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_0011 LysR family transcriptional regulator gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0258 Alide2_0259 Alide2_0259 Alide2_0259 290730 291896 + Formyl-CoA transferase KEGG: axy:AXYL_02637 CoA-transferase family III family protein 17~PFAM: CoA-transferase family III gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0259 Alide2_0260 Alide2_0260 Alide2_0260 291914 293125 - integral membrane sensor signal transduction histidine kinase KEGG: dia:Dtpsy_0212 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0260 Alide2_0261 Alide2_0261 Alide2_0261 293135 293845 - two component transcriptional regulator%2C winged helix family KEGG: ajs:Ajs_0194 two component transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0261 Alide2_0262 Alide2_0262 Alide2_0262 293941 295299 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: dia:Dtpsy_0214 major facilitator superfamily MFS_1 gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0262 Alide2_0263 Alide2_0263 Alide2_0263 295309 295974 + Cupin 2 conserved barrel domain protein KEGG: dia:Dtpsy_0215 transcriptional regulator%2C AraC family~PFAM: Cupin 2%2C conserved barrel~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0263 Alide2_0264 Alide2_0264 Alide2_0264 296088 296981 + protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: ajs:Ajs_0201 hypothetical protein gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0264 Alide2_0265 Alide2_0265 Alide2_0265 296978 297832 + peptidase M48 Ste24p PFAM: Peptidase M48~KEGG: ajs:Ajs_0203 peptidase M48%2C Ste24p gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0265 Alide2_0266 Alide2_0266 Alide2_0266 297875 298105 - pseudogene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0266 Alide2_0267 Alide2_0267 Alide2_0267 298107 298319 + pseudogene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0267 Alide2_0268 Alide2_0268 Alide2_0268 298389 299144 - transcriptional regulator%2C GntR family KEGG: ajs:Ajs_0204 GntR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C GntR%3B GntR%2C C-terminal~SMART: HTH transcriptional regulator%2C GntR%3B GntR%2C C-terminal gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0268 Alide2_0269 Alide2_0269 Alide2_0269 299146 300852 - sigma54 specific transcriptional regulator%2C Fis family KEGG: lch:Lcho_3364 putative sigma54 specific transcriptional regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Activator of aromatic catabolism%3B Helix-turn-helix%2C Fis-type%3B 4-vinyl reductase%2C 4VR~SMART: ATPase%2C AAA+ type%2C core gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0269 Alide2_0270 Alide2_0270 Alide2_0270 301084 301395 + Phenol hydroxylase subunit PFAM: Phenol hydroxylase subunit~KEGG: avn:Avin_30760 multi-component phenol hydoxylase%2C assembly subunit%3B LapK gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0270 Alide2_0271 Alide2_0271 Alide2_0271 301439 302431 + Phenol 2-monooxygenase KEGG: azo:azo2443 phenol hydroxylase subunit P1~PFAM: Methane/phenol/toluene hydroxylase gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0271 Alide2_0272 Alide2_0272 Alide2_0272 302454 302723 + monooxygenase component MmoB/DmpM PFAM: Monooxygenase component MmoB/DmpM~KEGG: azo:azo2442 phenol hydrolase subunit P2 gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0272 Alide2_0273 Alide2_0273 Alide2_0273 302749 304296 + Phenol 2-monooxygenase KEGG: azo:azo2441 phenol hydroxylase subunit P3~PFAM: Methane/phenol/toluene hydroxylase%3B YHS gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0273 Alide2_0274 Alide2_0274 Alide2_0274 304363 304719 + Phenol hydroxylase conserved region PFAM: Phenol hydroxylase%2Cconserved region~KEGG: rpf:Rpic12D_3551 phenol hydroxylase conserved region gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0274 Alide2_0275 Alide2_0275 Alide2_0275 304790 305860 + Phenol 2-monooxygenase KEGG: azo:azo1850 phenol 2-monooxygenase~PFAM: Oxidoreductase%2C FAD-binding domain%3B Oxidoreductase FAD/NAD(P)-binding%3B Ferredoxin gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0275 Alide2_0276 Alide2_0276 Alide2_0276 305874 306215 + ferredoxin PFAM: Ferredoxin~KEGG: ajs:Ajs_0217 ferredoxin gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0276 Alide2_0277 Alide2_0277 Alide2_0277 306238 307164 + catechol 2%2C3 dioxygenase TIGRFAM: Catechol 2%2C3 dioxygenase~KEGG: ajs:Ajs_0218 catechol 2%2C3-dioxygenase~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0277 Alide2_0278 Alide2_0278 Alide2_0278 307164 307595 + protein of unknown function DUF336 PFAM: Domain of unknown function DUF336~KEGG: ajs:Ajs_0219 hypothetical protein gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0278 Alide2_0279 Alide2_0279 Alide2_0279 307608 308504 + hypothetical protein KEGG: ctt:CtCNB1_3154 ZorfX gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0279 Alide2_0280 Alide2_0280 Alide2_0280 309275 310735 + 2-hydroxymuconic semialdehyde dehydrogenase TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase~KEGG: ajs:Ajs_0220 betaine-aldehyde dehydrogenase~PFAM: Aldehyde dehydrogenase domain gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0280 Alide2_0281 Alide2_0281 Alide2_0281 310797 311660 + 2%2C6-dioxo-6-phenylhexa-3-enoate hydrolase KEGG: ctt:CtCNB1_3150 alpha/beta hydrolase fold protein~PFAM: Alpha/beta hydrolase fold-1 gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0281 Alide2_0282 Alide2_0282 Alide2_0282 311665 312447 + 2-oxopent-4-enoate hydratase TIGRFAM: 2-oxopent-4-enoate hydratase~KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase~PFAM: Fumarylacetoacetase%2C C-terminal-like gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0282 Alide2_0283 Alide2_0283 Alide2_0283 312466 313380 + acetaldehyde dehydrogenase (acetylating) SMART: Semialdehyde dehydrogenase%2C NAD-binding~TIGRFAM: Acetaldehyde dehydrogenase~KEGG: ajs:Ajs_0223 acetaldehyde dehydrogenase~PFAM: Acetaldehyde dehydrogenase%2C C-terminal%3B Semialdehyde dehydrogenase%2C NAD-binding gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0283 Alide2_0284 Alide2_0284 Alide2_0284 313395 314432 + 4-hydroxy-2-oxovalerate aldolase TIGRFAM: 4-hydroxy-2-oxovalerate aldolase~KEGG: ajs:Ajs_0224 4-hydroxy-2-ketovalerate aldolase~PFAM: Pyruvate carboxyltransferase%3B DmpG-like communication gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0284 Alide2_0285 Alide2_0285 Alide2_0285 314466 315254 + 4-oxalocrotonate decarboxylase TIGRFAM: 4-oxalocrotonate decarboxylase~KEGG: ajs:Ajs_0225 4-oxalocrotonate decarboxylase~PFAM: Fumarylacetoacetase%2C C-terminal-like gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0285 Alide2_0286 Alide2_0286 Alide2_0286 315295 316263 + twin-arginine translocation pathway signal KEGG: ctt:CtCNB1_3145 twin-arginine translocation pathway signal gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0286 Alide2_0287 Alide2_0287 Alide2_0287 316290 316481 + 4-oxalocrotonate tautomerase family enzyme KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase~TIGRFAM: 4-oxalocrotonate tautomerase%2C bacteria/archaea~PFAM: 4-oxalocrotonate tautomerase gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0287 Alide2_0288 Alide2_0288 Alide2_0288 316546 317184 - beta-lactamase domain protein KEGG: ajs:Ajs_0228 beta-lactamase domain-containing protein~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0288 Alide2_0289 Alide2_0289 Alide2_0289 317250 318002 - transcriptional regulator%2C IclR family KEGG: dac:Daci_4281 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0289 Alide2_0290 Alide2_0290 Alide2_0290 318127 319107 + hypothetical protein KEGG: dac:Daci_4280 hypothetical protein gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0290 Alide2_0291 Alide2_0291 Alide2_0291 319115 319987 + amidohydrolase 2 PFAM: Amidohydrolase 2~KEGG: dac:Daci_4279 amidohydrolase 2 gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0291 Alide2_0292 Alide2_0292 Alide2_0292 320010 320999 + hypothetical protein KEGG: dac:Daci_4278 hypothetical protein gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0292 Alide2_0293 Alide2_0293 Alide2_0293 321032 321718 + Dimethylmenaquinone methyltransferase PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase~KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0293 Alide2_0294 Alide2_0294 Alide2_0294 321715 322632 + Phosphoglycerate dehydrogenase KEGG: vap:Vapar_5586 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0294 Alide2_0295 Alide2_0295 Alide2_0295 322657 323646 + hypothetical protein KEGG: vap:Vapar_3894 hypothetical protein gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0295 Alide2_0296 Alide2_0296 Alide2_0296 323993 324949 + hypothetical protein KEGG: dac:Daci_4274 hypothetical protein gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0296 Alide2_0297 Alide2_0297 Alide2_0297 324955 325830 + amidohydrolase 2 PFAM: Amidohydrolase 2~KEGG: dac:Daci_4273 amidohydrolase 2 gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0297 Alide2_0298 Alide2_0298 Alide2_0298 325843 326760 + SMP-30/Gluconolaconase/LRE-like region-containing protein PFAM: SMP-30/Gluconolaconase/LRE-like region~KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain-containing protein gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0298 Alide2_0299 Alide2_0299 Alide2_0299 326772 327755 - extra-cytoplasmic solute receptor KEGG: rme:Rmet_4433 extra-cytoplasmic solute receptor gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0299 Alide2_0300 Alide2_0300 Alide2_0300 327774 328667 - 3-hydroxyisobutyrate dehydrogenase KEGG: vei:Veis_2089 6-phosphogluconate dehydrogenase%2C NAD-binding~PFAM: 6-phosphogluconate dehydrogenase%2C NAD-binding gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0300 Alide2_0301 Alide2_0301 Alide2_0301 328690 330141 - Betaine-aldehyde dehydrogenase KEGG: vei:Veis_2088 betaine-aldehyde dehydrogenase~PFAM: Aldehyde dehydrogenase domain gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0301 Alide2_0302 Alide2_0302 Alide2_0302 330336 331064 - transcriptional regulator%2C IclR family KEGG: rme:Rmet_4432 IclR family transcriptional regulator family~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0302 Alide2_0303 Alide2_0303 Alide2_0303 331337 331741 + hypothetical protein KEGG: axy:AXYL_03188 hypothetical protein gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0303 Alide2_0304 Alide2_0304 Alide2_0304 331762 332610 + alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10 gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0304 Alide2_0305 Alide2_0305 Alide2_0305 332665 333819 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: bav:BAV0983 ABC transporter%2C substrate-binding protein gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0305 Alide2_0306 Alide2_0306 Alide2_0306 333841 334710 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: bav:BAV0982 ABC transporter%2C permease protein gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0306 Alide2_0307 Alide2_0307 Alide2_0307 334715 335713 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dma:DMR_11370 ABC transporter permease protein gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0307 Alide2_0308 Alide2_0308 Alide2_0308 335710 336489 + Sulfate-transporting ATPase PFAM: ABC transporter-like~KEGG: pth:PTH_2348 ABC-type branched-chain amino acid transport systems%2C ATPase component~SMART: ATPase%2C AAA+ type%2C core gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0308 Alide2_0309 Alide2_0309 Alide2_0309 336476 337189 + Fe(3+)-transporting ATPase PFAM: ABC transporter-like~KEGG: oan:Oant_4420 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0309 Alide2_0310 Alide2_0310 Alide2_0310 337192 338214 + amidohydrolase 2 PFAM: Amidohydrolase 2~KEGG: bbr:BB2353 hypothetical protein gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0310 Alide2_0311 Alide2_0311 Alide2_0311 338199 338930 - transcriptional regulator%2C GntR family KEGG: ajs:Ajs_0229 GntR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C GntR%3B GntR%2C C-terminal~SMART: HTH transcriptional regulator%2C GntR%3B GntR%2C C-terminal gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0311 Alide2_0312 Alide2_0312 Alide2_0312 339014 340216 + Butyryl-CoA dehydrogenase KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain-containing protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0312 Alide2_0313 Alide2_0313 Alide2_0313 340213 340986 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: dia:Dtpsy_0225 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0313 Alide2_0314 Alide2_0314 Alide2_0314 340983 342023 + aminoglycoside phosphotransferase PFAM: Aminoglycoside phosphotransferase~KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0314 Alide2_0315 Alide2_0315 Alide2_0315 342121 342921 - exodeoxyribonuclease III Xth TIGRFAM: Exodeoxyribonuclease III xth%3B AP endonuclease%2C family 1~KEGG: dia:Dtpsy_0227 exodeoxyribonuclease III Xth~PFAM: Endonuclease/exonuclease/phosphatase gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0315 Alide2_0316 Alide2_0316 Alide2_0316 342932 343630 + orotate phosphoribosyltransferase TIGRFAM: Orotate phosphoribosyl transferase%2C clade 1~KEGG: dia:Dtpsy_0228 orotate phosphoribosyltransferase~PFAM: Phosphoribosyltransferase gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0316 Alide2_0317 Alide2_0317 Alide2_0317 343651 344355 + hypothetical protein KEGG: dia:Dtpsy_0229 hypothetical protein gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0317 Alide2_0318 Alide2_0318 Alide2_0318 344424 345869 - glutamyl-tRNA(Gln) amidotransferase%2C B subunit TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase%2C B subunit~PFAM: Glutamyl-tRNA(Gln) amidotransferase%2C subunit B/E%2C N-terminal%3B Asn/Gln amidotransferase~KEGG: dac:Daci_0351 glutamyl-tRNA(Gln) amidotransferase subunit B~SMART: Asn/Gln amidotransferase gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0318 Alide2_0319 Alide2_0319 Alide2_0319 345872 347362 - Glutamyl-tRNA(Gln) amidotransferase subunit A PFAM: Amidase~TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit~HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit~KEGG: ajs:Ajs_0237 aspartyl/glutamyl-tRNA amidotransferase subunit A gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0319 Alide2_0320 Alide2_0320 Alide2_0320 347359 347658 - glutamyl-tRNA(Gln) amidotransferase%2C C subunit KEGG: aav:Aave_0293 aspartyl/glutamyl-tRNA amidotransferase subunit C~TIGRFAM: Glu-tRNAGln amidotransferase%2C C subunit~PFAM: Glu-tRNAGln amidotransferase%2C C subunit gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0320 Alide2_0321 Alide2_0321 Alide2_0321 347864 348907 + cell shape determining protein%2C MreB/Mrl family KEGG: dia:Dtpsy_0233 rod shape-determining protein MreB~TIGRFAM: Cell shape determining protein MreB/Mrl~PFAM: Cell shape determining protein MreB/Mrl gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0321 Alide2_0322 Alide2_0322 Alide2_0322 348937 349854 + rod shape-determining protein MreC KEGG: ajs:Ajs_0240 rod shape-determining protein MreC~TIGRFAM: Rod shape-determining protein MreC%2C subtype~PFAM: Rod shape-determining protein MreC gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0322 Alide2_0323 Alide2_0323 Alide2_0323 349851 350372 + rod shape-determining protein MreD KEGG: ajs:Ajs_0241 putative rod shape-determining MreD transmembrane protein~TIGRFAM: Cell shape-determining protein MreD~PFAM: Cell shape-determining protein MreD gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0323 Alide2_0324 Alide2_0324 Alide2_0324 350389 352332 + penicillin-binding protein 2 TIGRFAM: Penicillin-binding protein 2~KEGG: dia:Dtpsy_0236 penicillin-binding protein 2~PFAM: Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding protein%2C dimerisation domain gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0324 Alide2_0325 Alide2_0325 Alide2_0325 352348 353259 - arginase TIGRFAM: Arginase%2C subgroup~KEGG: dia:Dtpsy_0241 arginase~PFAM: Ureohydrolase gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0325 Alide2_0326 Alide2_0326 Alide2_0326 353273 354031 - protein of unknown function DUF81 PFAM: Protein of unknown function DUF81~KEGG: aav:Aave_0304 hypothetical protein gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0326 Alide2_0327 Alide2_0327 Alide2_0327 354278 355960 - Choline dehydrogenase KEGG: ajs:Ajs_0249 glucose-methanol-choline oxidoreductase~PFAM: Glucose-methanol-choline oxidoreductase%2C N-terminal%3B Glucose-methanol-choline oxidoreductase%2C C-terminal gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0327 Alide2_0328 Alide2_0328 Alide2_0328 356227 357345 + protein of unknown function DUF140 KEGG: ajs:Ajs_0250 hypothetical protein~TIGRFAM: Domain of unknown function DUF140~PFAM: Domain of unknown function DUF140 gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0328 Alide2_0329 Alide2_0329 Alide2_0329 357348 358151 + Polyamine-transporting ATPase PFAM: ABC transporter-like~KEGG: ajs:Ajs_0251 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0329 Alide2_0330 Alide2_0330 Alide2_0330 358151 359128 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry-related~KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0330 Alide2_0331 Alide2_0331 Alide2_0331 359139 359819 + protein of unknown function DUF330 KEGG: ajs:Ajs_0253 putative lipoprotein~manually curated~PFAM: Protein of unknown function DUF330 gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0331 Alide2_0332 Alide2_0332 Alide2_0332 359866 360072 - pseudogene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0332 Alide2_0333 Alide2_0333 Alide2_0333 360273 361202 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: bph:Bphy_6198 LysR family transcriptional regulator gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0333 Alide2_0334 Alide2_0334 Alide2_0334 361283 363292 + aconitate hydratase domain-containing protein PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%3B Aconitase A/isopropylmalate dehydratase small subunit%2C swivel~KEGG: cti:RALTA_B0856 putative hydrolyase gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0334 Alide2_0335 Alide2_0335 Alide2_0335 363330 364319 + hypothetical protein KEGG: cti:RALTA_B0858 conserved hypothetical protein%3B UPF0065 gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0335 Alide2_0336 Alide2_0336 Alide2_0336 364328 364861 + regulator of ribonuclease activity A KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA~TIGRFAM: Ribonuclease E inhibitor RraA~PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0336 Alide2_0337 Alide2_0337 Alide2_0337 364812 365447 - multiple antibiotic resistance (MarC)-related protein KEGG: dia:Dtpsy_0253 multiple antibiotic resistance (MarC)-related protein~TIGRFAM: Multiple antibiotic resistance (MarC)-related~PFAM: Multiple antibiotic resistance (MarC)-related gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0337 Alide2_0338 Alide2_0338 Alide2_0338 365561 366250 + Carboxymethylenebutenolidase KEGG: dia:Dtpsy_0255 carboxymethylenebutenolidase~PFAM: Dienelactone hydrolase gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0338 Alide2_0339 Alide2_0339 Alide2_0339 366314 367882 - drug resistance transporter%2C EmrB/QacA subfamily KEGG: dia:Dtpsy_0256 drug resistance transporter%2C EmrB/QacA subfamily~TIGRFAM: Drug resistance transporter EmrB/QacA subfamily~PFAM: Major facilitator superfamily MFS-1 gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0339 Alide2_0340 Alide2_0340 Alide2_0340 367885 369084 - secretion protein HlyD family protein PFAM: Secretion protein HlyD~KEGG: ajs:Ajs_0262 secretion protein HlyD family protein gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0340 Alide2_0341 Alide2_0341 Alide2_0341 369119 370540 - RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: dia:Dtpsy_0258 RND efflux system%2C outer membrane lipoprotein%2C NodT family~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0341 Alide2_0342 Alide2_0342 Alide2_0342 370570 371082 - transcriptional regulator%2C MarR family KEGG: ajs:Ajs_0264 MarR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0342 Alide2_0343 Alide2_0343 Alide2_0343 371154 372329 - Mg2 transporter protein CorA family protein PFAM: Mg2+ transporter protein%2C CorA-like~KEGG: dia:Dtpsy_0260 Mg2 transporter protein CorA family protein gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0343 Alide2_0344 Alide2_0344 Alide2_0344 372369 373397 - Porphobilinogen synthase KEGG: ajs:Ajs_0266 delta-aminolevulinic acid dehydratase~PFAM: Tetrapyrrole biosynthesis%2C porphobilinogen synthase gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0344 Alide2_0345 Alide2_0345 Alide2_0345 373430 374152 + biotin/lipoate A/B protein ligase PFAM: Biotin/lipoate A/B protein ligase~KEGG: dia:Dtpsy_0262 biotin/lipoate A/B protein ligase gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0345 Alide2_0346 Alide2_0346 Alide2_0346 374300 374728 + Uncharacterized protein family UPF0093 PFAM: Uncharacterised protein family UPF0093~KEGG: dia:Dtpsy_0263 hypothetical protein gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0346 Alide2_0347 Alide2_0347 Alide2_0347 374754 375851 + VanZ family protein PFAM: VanZ-like~KEGG: ajs:Ajs_0269 VanZ family protein gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0347 Alide2_0348 Alide2_0348 Alide2_0348 375861 376202 + ferredoxin-like protein KEGG: dia:Dtpsy_0265 ferredoxin-like protein gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0348 Alide2_0349 Alide2_0349 Alide2_0349 376286 376921 + putative transmembrane protein KEGG: dia:Dtpsy_0266 putative transmembrane protein gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0349 Alide2_0350 Alide2_0350 Alide2_0350 377023 378186 + Beta-lactamase PFAM: Peptidase S11%2C D-alanyl-D-alanine carboxypeptidase A%2C N-terminal%3B Peptidase S11%2C D-Ala-D-Ala carboxypeptidase A%2C C-terminal~KEGG: ajs:Ajs_0272 penicillin-binding protein 6~SMART: Peptidase S11%2C D-Ala-D-Ala carboxypeptidase A%2C C-terminal gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0350 Alide2_0351 Alide2_0351 Alide2_0351 378288 378665 + ribosomal protein S12 KEGG: dia:Dtpsy_0268 30S ribosomal protein S12~TIGRFAM: Ribosomal protein S12%2C bacteria~PFAM: Ribosomal protein S12/S23 gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0351 Alide2_0352 Alide2_0352 Alide2_0352 378829 379302 + ribosomal protein S7 KEGG: xtr:100494042 30S ribosomal protein S7-like~TIGRFAM: Ribosomal protein S7%2C bacterial-type~PFAM: Ribosomal protein S7 gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0352 Alide2_0353 Alide2_0353 Alide2_0353 379389 381497 + translation elongation factor G TIGRFAM: Translation elongation factor EFG/EF2%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C C-terminal~KEGG: ajs:Ajs_0275 elongation factor G~SMART: Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFG/EF2%2C C-terminal gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0353 Alide2_0354 Alide2_0354 Alide2_0354 381731 382921 + translation elongation factor Tu KEGG: ajs:Ajs_0276 elongation factor Tu~TIGRFAM: Translation elongation factor EFTu/EF1A%2C bacterial/organelle%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C C-terminal%3B Translation elongation factor EFTu/EF1A%2C domain 2 gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0354 Alide2_0355 Alide2_0355 Alide2_0355 382949 383260 + 30S ribosomal protein S10 TIGRFAM: Ribosomal protein S10 subgroup~HAMAP: Ribosomal protein S10 subgroup~KEGG: vei:Veis_1263 30S ribosomal protein S10~PFAM: Ribosomal protein S10 gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0355 Alide2_0356 Alide2_0356 Alide2_0356 383477 384151 + 50S ribosomal protein L3 KEGG: dia:Dtpsy_0273 50S ribosomal protein L3~TIGRFAM: Ribosomal protein L3%2C bacterial/organelle-type~PFAM: Ribosomal protein L3 gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0356 Alide2_0357 Alide2_0357 Alide2_0357 384151 384771 + ribosomal protein L4/L1e PFAM: Ribosomal protein L4/L1e~KEGG: dia:Dtpsy_0274 50S ribosomal protein L4 gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0357 Alide2_0358 Alide2_0358 Alide2_0358 384768 385082 + Ribosomal protein L25/L23 PFAM: Ribosomal protein L25/L23~KEGG: dia:Dtpsy_0275 50S ribosomal protein L23 gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0358 Alide2_0359 Alide2_0359 Alide2_0359 385085 385909 + ribosomal protein L2 KEGG: dia:Dtpsy_0276 50S ribosomal protein L2~TIGRFAM: Ribosomal protein L2%2C bacterial-type~PFAM: Ribosomal protein L2%2C C-terminal%3B Ribosomal Proteins L2%2C RNA binding domain gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0359 Alide2_0360 Alide2_0360 Alide2_0360 385920 386195 + ribosomal protein S19 KEGG: xtr:100486557 30S ribosomal protein S19-like~TIGRFAM: Ribosomal protein S19%2C bacterial-type~PFAM: Ribosomal protein S19/S15 gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0360 Alide2_0361 Alide2_0361 Alide2_0361 386205 386537 + ribosomal protein L22 KEGG: dac:Daci_0396 50S ribosomal protein L22~TIGRFAM: Ribosomal protein L22%2C bacterial-type~PFAM: Ribosomal protein L22/L17 gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0361 Alide2_0362 Alide2_0362 Alide2_0362 386555 387427 + ribosomal protein S3 TIGRFAM: Ribosomal protein S3%2C bacterial~PFAM: Ribosomal protein S3%2C C-terminal%3B Ribosomal protein S3%2C N-terminal%3B K Homology%2C type 2~KEGG: aav:Aave_0344 30S ribosomal protein S3~SMART: K Homology gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0362 Alide2_0363 Alide2_0363 Alide2_0363 387430 387846 + ribosomal protein L16 KEGG: dia:Dtpsy_0280 50S ribosomal protein L16~TIGRFAM: Ribosomal protein L16~PFAM: Ribosomal protein L10e/L16 gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0363 Alide2_0364 Alide2_0364 Alide2_0364 387858 388055 + ribosomal protein L29 KEGG: dia:Dtpsy_0281 50S ribosomal protein L29~TIGRFAM: Ribosomal protein L29~PFAM: Ribosomal protein L29 gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0364 Alide2_0365 Alide2_0365 Alide2_0365 388069 388338 + 30S ribosomal protein S17 KEGG: dia:Dtpsy_0282 30S ribosomal protein S17~TIGRFAM: Ribosomal protein S17%2C bacterial-type~PFAM: Ribosomal protein S17 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0365 Alide2_0366 Alide2_0366 Alide2_0366 388418 388924 + Redoxin domain protein PFAM: Redoxin~KEGG: ajs:Ajs_0288 redoxin domain-containing protein gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0366 Alide2_0367 Alide2_0367 Alide2_0367 389030 389578 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase (GNAT) domain~KEGG: dia:Dtpsy_0284 GCN5-related N-acetyltransferase gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0367 Alide2_0368 Alide2_0368 Alide2_0368 389593 390321 - cytochrome b561 KEGG: dia:Dtpsy_0285 cytochrome b561 gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0368 Alide2_0369 Alide2_0369 Alide2_0369 390570 391073 - Redoxin domain protein PFAM: Redoxin~KEGG: dia:Dtpsy_0287 redoxin domain protein gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0369 Alide2_0370 Alide2_0370 Alide2_0370 391146 391796 + hypothetical protein KEGG: dia:Dtpsy_0288 hypothetical protein gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0370 Alide2_0371 Alide2_0371 Alide2_0371 391818 392228 + PTS system fructose subfamily IIA component PFAM: Phosphotransferase system%2C fructose subfamily IIA component~KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0371 Alide2_0372 Alide2_0372 Alide2_0372 392225 392494 + Phosphotransferase system%2C phosphocarrier protein HPr KEGG: dia:Dtpsy_0291 phosphocarrier%2C HPr family~TIGRFAM: Phosphotransferase system%2C phosphocarrier HPr protein~PFAM: Phosphotransferase system%2C phosphocarrier HPr protein gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0372 Alide2_0373 Alide2_0373 Alide2_0373 392513 394279 + phosphoenolpyruvate-protein phosphotransferase TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase~KEGG: ajs:Ajs_0297 phosphoenolpyruvate--protein phosphotransferase~PFAM: PEP-utilising enzyme%3B Phosphotransferase system%2C PEP-utilising enzyme%2C N-terminal%3B PEP-utilising enzyme%2C mobile domain gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0373 Alide2_0374 Alide2_0374 Alide2_0374 394346 395326 - Lipoyl synthase KEGG: dia:Dtpsy_0293 lipoyl synthase~PFAM: Radical SAM~TIGRFAM: Lipoate synthase~HAMAP: Lipoate synthase~SMART: Elongator protein 3/MiaB/NifB gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0374 Alide2_0375 Alide2_0375 Alide2_0375 395344 396036 - lipoate-protein ligase B TIGRFAM: Octanoyltransferase~KEGG: ajs:Ajs_0299 lipoate-protein ligase B~PFAM: Biotin/lipoate A/B protein ligase gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0375 Alide2_0376 Alide2_0376 Alide2_0376 396048 396344 - protein of unknown function DUF493 PFAM: Protein of unknown function DUF493~KEGG: dia:Dtpsy_0295 protein of unknown function DUF493 gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0376 Alide2_0377 Alide2_0377 Alide2_0377 396628 397020 + ATP synthase I chain PFAM: ATPase%2C F0 complex%2C subunit I~KEGG: aav:Aave_0365 putative ATP synthase protein I gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0377 Alide2_0378 Alide2_0378 Alide2_0378 397043 397906 + ATP synthase F0%2C A subunit KEGG: dia:Dtpsy_0297 F0F1 ATP synthase subunit A~TIGRFAM: ATPase%2C F0 complex%2C subunit A~PFAM: ATPase%2C F0 complex%2C subunit A gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0378 Alide2_0379 Alide2_0379 Alide2_0379 397958 398206 + ATP synthase subunit c TIGRFAM: ATPase%2C F0 complex%2C subunit C%2C bacterial/chloroplast~HAMAP: ATPase%2C F0 complex%2C subunit C~KEGG: dac:Daci_0415 F0F1 ATP synthase subunit C~PFAM: ATPase%2C F0/V0 complex%2C subunit C gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0379 Alide2_0380 Alide2_0380 Alide2_0380 398245 398715 + ATP synthase subunit b TIGRFAM: ATPase%2C F0 complex%2C subunit B%2C bacterial~HAMAP: ATPase%2C F0 complex%2C subunit B/B'%2C bacterial/chloroplast~KEGG: dia:Dtpsy_0299 F0F1 ATP synthase subunit B~PFAM: ATPase%2C F0 complex%2C subunit B/B'%2C bacterial/chloroplast gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0380 Alide2_0381 Alide2_0381 Alide2_0381 398734 399276 + ATP synthase F1%2C delta subunit KEGG: dia:Dtpsy_0300 F0F1 ATP synthase subunit delta~TIGRFAM: ATPase%2C F1 complex%2C OSCP/delta subunit~PFAM: ATPase%2C F1 complex%2C OSCP/delta subunit gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0381 Alide2_0382 Alide2_0382 Alide2_0382 399322 400881 + ATP synthase F1%2C alpha subunit KEGG: aav:Aave_0370 F0F1 ATP synthase subunit alpha~TIGRFAM: ATPase%2C F1 complex%2C alpha subunit~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0382 Alide2_0383 Alide2_0383 Alide2_0383 400900 401766 + ATP synthase F1%2C gamma subunit KEGG: dia:Dtpsy_0302 F0F1 ATP synthase subunit gamma~TIGRFAM: ATPase%2C F1 complex%2C gamma subunit~PFAM: ATPase%2C F1 complex%2C gamma subunit gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0383 Alide2_0384 Alide2_0384 Alide2_0384 401795 403204 + ATP synthase F1%2C beta subunit TIGRFAM: ATPase%2C F1 complex%2C beta subunit~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal~KEGG: dia:Dtpsy_0303 F0F1 ATP synthase subunit beta~SMART: ATPase%2C AAA+ type%2C core gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0384 Alide2_0385 Alide2_0385 Alide2_0385 403279 403695 + ATP synthase F1%2C epsilon subunit KEGG: dia:Dtpsy_0304 F0F1 ATP synthase subunit epsilon~TIGRFAM: ATPase%2C F1 complex%2C delta/epsilon subunit~PFAM: ATPase%2C F1 complex%2C delta/epsilon subunit%2C N-terminal%3B ATPase%2C F1 complex%2C delta/epsilon subunit%2C C-terminal gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0385 Alide2_0386 Alide2_0386 Alide2_0386 403901 404329 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: rfr:Rfer_2709 transposase IS3/IS911 gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0386 Alide2_0387 Alide2_0387 Alide2_0387 404326 404658 + IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2-like~KEGG: rfr:Rfer_2710 IS66 Orf2 like gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0387 Alide2_0388 Alide2_0388 Alide2_0388 404741 406255 + transposase IS66 PFAM: Transposase%2C IS66~KEGG: dia:Dtpsy_2523 transposase IS66 gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0388 Alide2_0389 Alide2_0389 Alide2_0389 406282 406909 - pseudogene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0389 Alide2_0390 Alide2_0390 Alide2_0390 406909 407842 - pseudogene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0390 Alide2_0391 Alide2_0391 Alide2_0391 408367 409180 + pseudogene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0391 Alide2_0392 Alide2_0392 Alide2_0392 409186 409719 - protein of unknown function DUF477 PFAM: Protein of unknown function DUF477~KEGG: ajs:Ajs_0314 hypothetical protein gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0392 Alide2_0393 Alide2_0393 Alide2_0393 409734 410621 - protein of unknown function DUF477 PFAM: Protein of unknown function DUF477~KEGG: ajs:Ajs_0315 hypothetical protein gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0393 Alide2_0394 Alide2_0394 Alide2_0394 410625 411230 - LemA family protein PFAM: LemA~KEGG: aav:Aave_0381 LemA family protein gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0394 Alide2_0395 Alide2_0395 Alide2_0395 411351 411818 + hypothetical protein KEGG: dia:Dtpsy_0312 hypothetical protein gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0395 Alide2_0396 Alide2_0396 Alide2_0396 411864 412400 + Protein of unknown function DUF2944 PFAM: Protein of unknown function DUF2944~KEGG: ajs:Ajs_0319 hypothetical protein gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0396 Alide2_0397 Alide2_0397 Alide2_0397 412556 413392 - cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: aav:Aave_0385 cytochrome c%2C class I gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0397 Alide2_0398 Alide2_0398 Alide2_0398 413522 414967 - RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: dia:Dtpsy_0316 RND efflux system%2C outer membrane lipoprotein%2C NodT family~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0398 Alide2_0399 Alide2_0399 Alide2_0399 414992 418147 - transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family KEGG: dia:Dtpsy_0317 transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family~TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1~PFAM: Acriflavin resistance protein gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0399 Alide2_0400 Alide2_0400 Alide2_0400 418166 419446 - efflux transporter%2C RND family%2C MFP subunit KEGG: dia:Dtpsy_0318 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0400 Alide2_0401 Alide2_0401 Alide2_0401 419638 420258 + Tetracycline transcriptional repressor MAATS-type domain-containing protein PFAM: Transcription regulator MAATS%2C C-terminal%3B Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: dia:Dtpsy_0319 transcriptional regulator%2C TetR family gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0401 Alide2_0402 Alide2_0402 Alide2_0402 420914 422104 + translation elongation factor Tu KEGG: ajs:Ajs_0276 elongation factor Tu~TIGRFAM: Translation elongation factor EFTu/EF1A%2C bacterial/organelle%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C C-terminal%3B Translation elongation factor EFTu/EF1A%2C domain 2 gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0402 Alide2_0403 Alide2_0403 Alide2_0403 422281 422664 + preprotein translocase%2C SecE subunit KEGG: ajs:Ajs_3903 preprotein translocase subunit SecE~TIGRFAM: SecE subunit of protein translocation complex~PFAM: Protein SecE/Sec61-gamma protein gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0403 Alide2_0404 Alide2_0404 Alide2_0404 422664 423254 + NusG antitermination factor TIGRFAM: Transcription antitermination protein%2C NusG~PFAM: Transcription antitermination protein%2C NusG%2C N-terminal%3B KOW~KEGG: dia:Dtpsy_3251 NusG antitermination factor~SMART: Transcription antitermination protein%2C NusG%2C N-terminal%3B KOW gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0404 Alide2_0405 Alide2_0405 Alide2_0405 423385 423816 + ribosomal protein L11 TIGRFAM: Ribosomal protein L11%2C bacterial-type~PFAM: Ribosomal protein L11%2C N-terminal domain%3B Ribosomal protein L11%2C C-terminal domain~KEGG: aav:Aave_4535 50S ribosomal protein L11~SMART: Ribosomal protein L11 gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0405 Alide2_0406 Alide2_0406 Alide2_0406 423817 424512 + ribosomal protein L1 KEGG: dia:Dtpsy_3249 50S ribosomal protein L1~TIGRFAM: Ribosomal protein L1%2C bacterial-type~PFAM: Ribosomal protein L1 gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0406 Alide2_0407 Alide2_0407 Alide2_0407 424745 425251 + 50S ribosomal protein L10 KEGG: aav:Aave_4533 50S ribosomal protein L10~HAMAP: Ribosomal protein L10~PFAM: Ribosomal protein L10/acidic P0 gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0407 Alide2_0408 Alide2_0408 Alide2_0408 425306 425686 + ribosomal protein L7/L12 KEGG: dia:Dtpsy_3247 50S ribosomal protein L7/L12~TIGRFAM: Ribosomal protein L7/L12~PFAM: Ribosomal protein L7/L12%2C C-terminal gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0408 Alide2_0409 Alide2_0409 Alide2_0409 425961 430085 + DNA-directed RNA polymerase%2C beta subunit KEGG: aav:Aave_4531 DNA-directed RNA polymerase subunit beta~TIGRFAM: DNA-directed RNA polymerase%2C beta subunit%2C bacterial-type~PFAM: DNA-directed RNA polymerase%2C subunit 2%2C domain 6%3B RNA polymerase Rpb2%2C domain 2%3B RNA polymerase Rpb2%2C domain 3%3B RNA polymerase Rpb2%2C domain 7%3B RNA polymerase%2C beta subunit%2C protrusion%3B DNA-directed RNA polymerase%2C beta subunit%2C external 1 domain gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0409 Alide2_0410 Alide2_0410 Alide2_0410 430106 434335 + DNA-directed RNA polymerase%2C beta' subunit TIGRFAM: DNA-directed RNA polymerase%2C subunit beta-prime~PFAM: RNA polymerase Rpb1%2C domain 1%3B RNA polymerase Rpb1%2C domain 5%3B RNA polymerase Rpb1%2C domain 3%3B RNA polymerase%2C alpha subunit%3B RNA polymerase Rpb1%2C domain 4~KEGG: dia:Dtpsy_3245 DNA-directed RNA polymerase subunit beta'~SMART: RNA polymerase%2C N-terminal gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0410 Alide2_0411 Alide2_0411 Alide2_0411 434455 435021 + LemA family protein PFAM: LemA~KEGG: dia:Dtpsy_3244 hypothetical protein gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0411 Alide2_0412 Alide2_0412 Alide2_0412 435018 436385 + sun protein KEGG: dia:Dtpsy_3243 sun protein~TIGRFAM: Fmu%2C rRNA SAM-dependent methyltransferase~PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0412 Alide2_0413 Alide2_0413 Alide2_0413 436429 437010 + hypothetical protein KEGG: ajs:Ajs_3893 hypothetical protein gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0413 Alide2_0414 Alide2_0414 Alide2_0414 437007 439295 + multi-sensor signal transduction histidine kinase KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B HAMP linker domain%3B PAS fold-4%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS%3B HAMP linker domain gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0414 Alide2_0415 Alide2_0415 Alide2_0415 439335 440030 + two component transcriptional regulator%2C Fis family KEGG: dia:Dtpsy_3240 two component transcriptional regulator%2C fis family~PFAM: Signal transduction response regulator%2C receiver domain%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver domain gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0415 Alide2_0416 Alide2_0416 Alide2_0416 440383 440643 - phage head-tail adaptor TIGRFAM: Phage head-tail joining protein~KEGG: aav:Aave_1622 phage head-tail adaptor%2C putative gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0416 Alide2_0417 Alide2_0417 Alide2_0417 440683 441516 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: tin:Tint_1916 integrase catalytic region gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0417 Alide2_0418 Alide2_0418 Alide2_0418 441549 441815 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0418 Alide2_0419 Alide2_0419 Alide2_0419 441958 442233 - uncharacterized phage DNA packaging-like protein TIGRFAM: Bacteriophage HK022%2C Gp6~KEGG: bcm:Bcenmc03_1290 phage protein DNA packaging protein gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0419 Alide2_0420 Alide2_0420 Alide2_0420 442399 443529 - pseudogene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0420 Alide2_0421 Alide2_0421 Alide2_0421 443529 443822 - pseudogene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0421 Alide2_0422 Alide2_0422 Alide2_0422 444078 444341 - hypothetical protein gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0422 Alide2_0423 Alide2_0423 Alide2_0423 444338 444511 - hypothetical protein gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0423 Alide2_0424 Alide2_0424 Alide2_0424 444508 444693 - hypothetical protein gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0424 Alide2_0425 Alide2_0425 Alide2_0425 444693 445772 - hypothetical protein KEGG: pol:Bpro_0958 putative major phage head protein/prohead proteinase gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0425 Alide2_0426 Alide2_0426 Alide2_0426 445865 446272 - hypothetical protein gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0426 Alide2_0427 Alide2_0427 Alide2_0427 446259 446603 - hypothetical protein KEGG: pol:Bpro_2970 hypothetical protein gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0427 Alide2_0428 Alide2_0428 Alide2_0428 446600 447796 - hypothetical protein KEGG: pol:Bpro_2969 hypothetical protein gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0428 Alide2_0429 Alide2_0429 Alide2_0429 447793 448257 - hypothetical protein KEGG: pol:Bpro_2968 hypothetical protein gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0429 Alide2_0430 Alide2_0430 Alide2_0430 448268 448468 - Prophage CP4-57 regulatory KEGG: drt:Dret_1611 phage transcriptional regulator%2C AlpA~manually curated~PFAM: Prophage CP4-57 regulatory gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0430 Alide2_0431 Alide2_0431 Alide2_0431 448949 449143 - hypothetical protein gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0431 Alide2_0432 Alide2_0432 Alide2_0432 449100 449366 - hypothetical protein gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0432 Alide2_0433 Alide2_0433 Alide2_0433 449467 450690 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: dia:Dtpsy_3164 integrase family protein gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0433 Alide2_0434 Alide2_0434 Alide2_0434 451055 451677 - pseudogene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0434 Alide2_0435 Alide2_0435 Alide2_0435 451674 451919 + pseudogene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0435 Alide2_0436 Alide2_0436 Alide2_0436 451934 454756 - pseudogene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0436 Alide2_0437 Alide2_0437 Alide2_0437 452646 453776 + putative transposase KEGG: pol:Bpro_2745 putative transposase gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0437 Alide2_0438 Alide2_0438 Alide2_0438 453742 454035 + hypothetical protein KEGG: pol:Bpro_2744 hypothetical protein gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0438 Alide2_0439 Alide2_0439 Alide2_0439 454753 455763 - UDP-glucuronate 5'-epimerase KEGG: dia:Dtpsy_0401 NAD-dependent epimerase/dehydratase~PFAM: NAD-dependent epimerase/dehydratase gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0439 Alide2_0440 Alide2_0440 Alide2_0440 455760 457277 - glycosyltransferase KEGG: dia:Dtpsy_0402 glycosyltransferase gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0440 Alide2_0441 Alide2_0441 Alide2_0441 457381 458412 + glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: ajs:Ajs_0411 glycosyl transferase family protein gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0441 Alide2_0442 Alide2_0442 Alide2_0442 458409 459332 + hypothetical protein KEGG: ajs:Ajs_0412 hypothetical protein gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0442 Alide2_0443 Alide2_0443 Alide2_0443 459329 460165 - Ribosomal RNA small subunit methyltransferase I PFAM: Tetrapyrrole methylase~manually curated~TIGRFAM: Uncharacterised protein family UPF0011~KEGG: dia:Dtpsy_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase~HAMAP: Ribosomal RNA small subunit methyltransferase I gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0443 Alide2_0444 Alide2_0444 Alide2_0444 460246 460644 + UPF0102 protein yraN TIGRFAM: Uncharacterised protein family UPF0102~HAMAP: Uncharacterised protein family UPF0102~KEGG: dia:Dtpsy_0406 hypothetical protein~PFAM: Uncharacterised protein family UPF0102 gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0444 Alide2_0445 Alide2_0445 Alide2_0445 460705 461307 + sugar isomerase (SIS) PFAM: Sugar isomerase (SIS)~KEGG: dia:Dtpsy_0407 phosphoheptose isomerase gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0445 Alide2_0446 Alide2_0446 Alide2_0446 461304 461969 + transport-associated protein PFAM: Transport-associated~KEGG: ajs:Ajs_0416 transport-associated gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0446 Alide2_0447 Alide2_0447 Alide2_0447 461998 462930 - 2-hydroxy-3-oxopropionate reductase KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase~PFAM: 6-phosphogluconate dehydrogenase%2C NAD-binding gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0447 Alide2_0448 Alide2_0448 Alide2_0448 463011 464147 - twitching motility protein KEGG: ajs:Ajs_0418 twitching motility protein~TIGRFAM: Pilus retraction protein PilT~PFAM: Type II secretion system protein E gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0448 Alide2_0449 Alide2_0449 Alide2_0449 464173 464802 - putative transcriptional regulator%2C Crp/Fnr family KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein~PFAM: Cyclic nucleotide-binding domain~SMART: Cyclic nucleotide-binding domain gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0449 Alide2_0450 Alide2_0450 Alide2_0450 464867 465910 - twitching motility protein KEGG: aav:Aave_0637 twitching motility protein~TIGRFAM: Pilus retraction protein PilT~PFAM: Type II secretion system protein E gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0450 Alide2_0451 Alide2_0451 Alide2_0451 465950 466672 + protein of unknown function UPF0001 KEGG: dac:Daci_1069 alanine racemase domain-containing protein~TIGRFAM: pyridoxal phosphate-dependent enzyme%2C YBL036C type~PFAM: Alanine racemase%2C N-terminal gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0451 Alide2_0452 Alide2_0452 Alide2_0452 466713 467843 + aminotransferase class V PFAM: Aminotransferase%2C class V/Cysteine desulfurase~KEGG: dia:Dtpsy_0414 aminotransferase class V gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0452 Alide2_0453 Alide2_0453 Alide2_0453 467904 468326 - hypothetical protein manually curated~KEGG: aav:Aave_0642 hypothetical protein gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0453 Alide2_0454 Alide2_0454 Alide2_0454 468511 469812 + protein of unknown function DUF445 PFAM: Protein of unknown function DUF445%2C transmembrane~KEGG: ajs:Ajs_0423 hypothetical protein gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0454 Alide2_0455 Alide2_0455 Alide2_0455 469870 471363 - D-lactate dehydrogenase (cytochrome) KEGG: dia:Dtpsy_0417 FAD linked oxidase domain protein~PFAM: FAD-linked oxidase%2C C-terminal%3B FAD linked oxidase%2C N-terminal gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0455 Alide2_0456 Alide2_0456 Alide2_0456 471430 472326 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_0418 transcriptional regulator%2C LysR family gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0456 Alide2_0457 Alide2_0457 Alide2_0457 472326 473174 - formyltetrahydrofolate deformylase TIGRFAM: Formyltetrahydrofolate deformylase~KEGG: xtr:100487869 formyltetrahydrofolate deformylase-like~PFAM: Formyl transferase%2C N-terminal%3B Amino acid-binding ACT gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0457 Alide2_0458 Alide2_0458 Alide2_0458 473220 475886 + diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS fold%3B PAS fold-3%3B PAS fold-4~KEGG: ctt:CtCNB1_4372 diguanylate cyclase/phosphodiesterase with~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS%3B PAC motif gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0458 Alide2_0459 Alide2_0459 Alide2_0459 475887 476747 - protein of unknown function DUF399 PFAM: Domain of unknown function DUF399~KEGG: dia:Dtpsy_0421 protein of unknown function DUF399 gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0459 Alide2_0460 Alide2_0460 Alide2_0460 477014 479449 + ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent TIGRFAM: Ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent~KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent~PFAM: Ribonucleotide reductase large subunit%2C C-terminal%3B Ribonucleotide reductase large subunit%2C N-terminal gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0460 Alide2_0461 Alide2_0461 Alide2_0461 479628 481544 + multi-sensor signal transduction histidine kinase KEGG: dia:Dtpsy_0423 GAF sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 3%2C dimerisation and phosphoacceptor domain%3B HAMP linker domain%3B GAF~SMART: ATPase-like%2C ATP-binding domain%3B HAMP linker domain gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0461 Alide2_0462 Alide2_0462 Alide2_0462 481541 482215 + two component transcriptional regulator%2C LuxR family KEGG: dia:Dtpsy_0424 two component transcriptional regulator%2C LuxR family~PFAM: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SMART: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0462 Alide2_0463 Alide2_0463 Alide2_0463 482444 483739 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: ajs:Ajs_0434 major facilitator superfamily transporter gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0463 Alide2_0464 Alide2_0464 Alide2_0464 483758 485203 + nitrite transporter KEGG: xtr:100497879 nitrite extrusion protein 1-like~TIGRFAM: Nitrate transporter~PFAM: Major facilitator superfamily MFS-1 gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0464 Alide2_0465 Alide2_0465 Alide2_0465 485240 489034 + nitrate reductase%2C alpha subunit SMART: Molybdopterin oxidoreductase%2C Fe4S4 domain~TIGRFAM: Nitrate reductase%2C alpha subunit~KEGG: ajs:Ajs_0436 respiratory nitrate reductase alpha subunit apoprotein~PFAM: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide-binding domain gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0465 Alide2_0466 Alide2_0466 Alide2_0466 489053 490576 + nitrate reductase%2C beta subunit KEGG: dia:Dtpsy_0428 nitrate reductase%2C beta subunit~TIGRFAM: Nitrate reductase%2C beta subunit gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0466 Alide2_0467 Alide2_0467 Alide2_0467 490588 491289 + nitrate reductase molybdenum cofactor assembly chaperone TIGRFAM: Nitrate reductase chaperone%2C NarJ~KEGG: dia:Dtpsy_0429 nitrate reductase molybdenum cofactor assembly chaperone~PFAM: DMSO/Nitrate reductase chaperone gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0467 Alide2_0468 Alide2_0468 Alide2_0468 491286 492014 + respiratory nitrate reductase%2C gamma subunit TIGRFAM: Nitrate reductase%2C gamma subunit~KEGG: dia:Dtpsy_0430 respiratory nitrate reductase%2C gamma subunit~PFAM: Nitrate reductase%2C gamma subunit gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0468 Alide2_0469 Alide2_0469 Alide2_0469 492142 492969 + PpiC-type peptidyl-prolyl cis-trans isomerase PFAM: Peptidyl-prolyl cis-trans isomerase%2C PpiC-type~KEGG: dia:Dtpsy_0431 PpiC-type peptidyl-prolyl cis-trans isomerase gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0469 Alide2_0470 Alide2_0470 Alide2_0470 493004 493681 + Carbonate dehydratase PFAM: Carbonic anhydrase~KEGG: dia:Dtpsy_0432 carbonate dehydratase~SMART: Carbonic anhydrase gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0470 Alide2_0471 Alide2_0471 Alide2_0471 493681 494331 + nitroreductase PFAM: Nitroreductase-like~KEGG: dia:Dtpsy_0434 nitroreductase gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0471 Alide2_0472 Alide2_0472 Alide2_0472 494328 494747 + hypothetical protein KEGG: dia:Dtpsy_0435 hypothetical protein gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0472 Alide2_0473 Alide2_0473 Alide2_0473 494801 495349 + hemerythrin HHE cation binding domain protein KEGG: dia:Dtpsy_0436 hemerythrin HHE cation binding domain protein gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0473 Alide2_0474 Alide2_0474 Alide2_0474 495539 495826 - Protein of unknown function DUF3567 PFAM: Protein of unknown function DUF3567~KEGG: ajs:Ajs_0446 hypothetical protein gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0474 Alide2_0475 Alide2_0475 Alide2_0475 495960 497111 - hypothetical protein KEGG: ajs:Ajs_0447 hypothetical protein gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0475 Alide2_0476 Alide2_0476 Alide2_0476 497293 498282 + fumarylacetoacetate (FAA) hydrolase PFAM: Fumarylacetoacetase%2C C-terminal-like~KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0476 Alide2_0477 Alide2_0477 Alide2_0477 498439 500643 + Tetratricopeptide TPR_1 repeat-containing protein KEGG: cph:Cpha266_1840 TPR repeat-containing protein~PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2~SMART: Tetratricopeptide repeat gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0477 Alide2_0478 Alide2_0478 Alide2_0478 500704 502779 - Trimethylamine-N-oxide reductase (cytochrome c) PFAM: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide-binding domain%3B Molybdopterin oxidoreductase%2C Fe4S4 domain~KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase~SMART: Molybdopterin oxidoreductase%2C Fe4S4 domain gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0478 Alide2_0479 Alide2_0479 Alide2_0479 502897 503928 - hypothetical protein KEGG: vei:Veis_1579 hypothetical protein gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0479 Alide2_0480 Alide2_0480 Alide2_0480 503969 504877 - Citryl-CoA lyase KEGG: vei:Veis_1580 citryl-CoA lyase~PFAM: Aldehyde-lyase domain gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0480 Alide2_0481 Alide2_0481 Alide2_0481 504893 506125 - Formyl-CoA transferase KEGG: vei:Veis_1581 formyl-CoA transferase~PFAM: CoA-transferase family III gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0481 Alide2_0482 Alide2_0482 Alide2_0482 506122 506625 - hypothetical protein KEGG: cti:RALTA_B1741 hypothetical protein gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0482 Alide2_0483 Alide2_0483 Alide2_0483 506622 507872 - Butyryl-CoA dehydrogenase KEGG: cti:RALTA_B1742 putative acyl CoA dehydrogenase oxidoreductase protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0483 Alide2_0484 Alide2_0484 Alide2_0484 507877 508380 - MaoC domain protein dehydratase PFAM: MaoC-like dehydratase~KEGG: cti:RALTA_B1743 hypothetical protein gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0484 Alide2_0485 Alide2_0485 Alide2_0485 508377 509756 - MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: vei:Veis_1585 MmgE/PrpD family protein gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0485 Alide2_0486 Alide2_0486 Alide2_0486 509962 510837 + Citryl-CoA lyase KEGG: xau:Xaut_1974 citryl-CoA lyase~PFAM: Aldehyde-lyase domain gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0486 Alide2_0487 Alide2_0487 Alide2_0487 510844 511602 + transcriptional regulator%2C IclR family PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~KEGG: rcu:RCOM_0002820 Transcriptional regulator kdgR%2C putative gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0487 Alide2_0488 Alide2_0488 Alide2_0488 511704 512909 + amidohydrolase TIGRFAM: Peptidase M20D%2C amidohydrolase~KEGG: dia:Dtpsy_0444 amidohydrolase~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0488 Alide2_0489 Alide2_0489 Alide2_0489 512978 513235 + acyl-coA-binding protein ACBP PFAM: Acyl-CoA-binding protein%2C ACBP~KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0489 Alide2_0490 Alide2_0490 Alide2_0490 513238 514341 - aminopeptidase PFAM: aminopeptidase~KEGG: dia:Dtpsy_0447 putative zinc protease protein gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0490 Alide2_0491 Alide2_0491 Alide2_0491 514348 515007 + DNA-3-methyladenine glycosylase I KEGG: ajs:Ajs_0457 DNA-3-methyladenine glycosylase I~PFAM: Methyladenine glycosylase gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0491 Alide2_0492 Alide2_0492 Alide2_0492 515058 515219 - hypothetical protein KEGG: dia:Dtpsy_0450 hypothetical protein gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0492 Alide2_0493 Alide2_0493 Alide2_0493 515500 516798 + Cyclopropane-fatty-acyl-phospholipid synthase KEGG: ajs:Ajs_0460 cyclopropane-fatty-acyl-phospholipid synthase~PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0493 Alide2_0494 Alide2_0494 Alide2_0494 516820 517140 + Domain of unknown function DUF1840 PFAM: Protein of unknown function DUF1840~KEGG: dia:Dtpsy_0452 hypothetical protein gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0494 Alide2_0495 Alide2_0495 Alide2_0495 517163 518179 - hypothetical protein KEGG: ajs:Ajs_0462 hypothetical protein gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0495 Alide2_0496 Alide2_0496 Alide2_0496 518322 519311 - hypothetical protein KEGG: vap:Vapar_5015 hypothetical protein gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0496 Alide2_0497 Alide2_0497 Alide2_0497 519438 520685 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase/ligase~KEGG: dia:Dtpsy_0455 putative phenylacetate-CoA ligase gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0497 Alide2_0498 Alide2_0498 Alide2_0498 520776 521618 - ABC transporter related protein KEGG: ctt:CtCNB1_4329 high-affinity branched-chain amino acid transport ATP-binding protein LivF~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0498 Alide2_0499 Alide2_0499 Alide2_0499 521758 523071 - hypothetical protein KEGG: dac:Daci_1155 hypothetical protein gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0499 Alide2_0500 Alide2_0500 Alide2_0500 523130 524194 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: ctt:CtCNB1_4327 membrane protein gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0500 Alide2_0501 Alide2_0501 Alide2_0501 524216 525145 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: ctt:CtCNB1_4326 high-affinity branched-chain amino acidtransport system permease protein LivH gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0501 Alide2_0502 Alide2_0502 Alide2_0502 525166 525951 - Sulfate-transporting ATPase PFAM: ABC transporter-like~KEGG: dac:Daci_1158 ABC transporter-like protein~SMART: ATPase%2C AAA+ type%2C core gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0502 Alide2_0503 Alide2_0503 Alide2_0503 525969 527900 - Long-chain-fatty-acid--CoA ligase KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0503 Alide2_0504 Alide2_0504 Alide2_0504 528121 529812 + Peptidoglycan-binding domain 1 protein KEGG: dia:Dtpsy_0462 peptidoglycan-binding domain 1 protein~PFAM: Peptidoglycan binding-like~SMART: ATPase%2C AAA+ type%2C core gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0504 Alide2_0505 Alide2_0505 Alide2_0505 529817 530521 + hypothetical protein KEGG: ajs:Ajs_0472 hypothetical protein gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0505 Alide2_0506 Alide2_0506 Alide2_0506 530651 531442 + putative transcriptional regulator%2C Crp/Fnr family KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator~PFAM: Cyclic nucleotide-binding domain~SMART: Cyclic nucleotide-binding domain gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0506 Alide2_0507 Alide2_0507 Alide2_0507 531481 532401 + pseudouridine synthase Rsu TIGRFAM: Pseudouridine synthase%2C RsuA/RluB/E/F~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4~KEGG: ajs:Ajs_0474 RNA-binding S4 domain-containing protein~SMART: RNA-binding S4 gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0507 Alide2_0508 Alide2_0508 Alide2_0508 532499 534460 + Heat shock protein Hsp90 KEGG: dia:Dtpsy_0466 heat shock protein 90~PFAM: Heat shock protein Hsp90%2C C-terminal%3B ATPase-like%2C ATP-binding domain~SMART: ATPase-like%2C ATP-binding domain gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0508 Alide2_0509 Alide2_0509 Alide2_0509 534493 534978 + hypothetical protein KEGG: dac:Daci_1191 hypothetical protein gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0509 Alide2_0510 Alide2_0510 Alide2_0510 535072 536052 + hypothetical protein KEGG: dia:Dtpsy_0467 hypothetical protein gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0510 Alide2_0511 Alide2_0511 Alide2_0511 536053 537096 - aminoglycoside phosphotransferase PFAM: Aminoglycoside phosphotransferase~KEGG: ajs:Ajs_0479 serine/threonine protein kinase gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0511 Alide2_0512 Alide2_0512 Alide2_0512 537119 538567 - serine/threonine protein kinase PFAM: Serine/threonine-protein kinase-like domain%3B UspA~KEGG: dia:Dtpsy_0471 serine/threonine protein kinase gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0512 Alide2_0513 Alide2_0513 Alide2_0513 538571 539329 - metallophosphoesterase PFAM: Metallo-dependent phosphatase~KEGG: dia:Dtpsy_0472 metallophosphoesterase gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0513 Alide2_0514 Alide2_0514 Alide2_0514 539559 540755 + Formyl-CoA transferase KEGG: ajs:Ajs_0058 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0514 Alide2_0515 Alide2_0515 Alide2_0515 540790 541251 + hypothetical protein KEGG: ctt:CtCNB1_2196 hypothetical protein gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0515 Alide2_0516 Alide2_0516 Alide2_0516 541372 541461 + pseudogene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0516 Alide2_0517 Alide2_0517 Alide2_0517 541514 542314 - 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase TIGRFAM: 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase~KEGG: dia:Dtpsy_0475 2-dehydro-3-deoxyglucarate aldolase~PFAM: Aldehyde-lyase domain gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0517 Alide2_0518 Alide2_0518 Alide2_0518 542317 543144 - 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase TIGRFAM: 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase~KEGG: aav:Aave_4269 2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase~PFAM: Fumarylacetoacetase%2C C-terminal-like gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0518 Alide2_0519 Alide2_0519 Alide2_0519 543141 544010 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase KEGG: aav:Aave_4268 5-carboxymethyl-2-hydroxymuconate delta-isomerase~PFAM: Fumarylacetoacetase%2C C-terminal-like gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0519 Alide2_0520 Alide2_0520 Alide2_0520 544007 544900 - amidohydrolase 2 PFAM: Amidohydrolase 2~KEGG: aav:Aave_4267 amidohydrolase 2 gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0520 Alide2_0521 Alide2_0521 Alide2_0521 544921 545373 - Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: aav:Aave_4266 endoribonuclease L-PSP gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0521 Alide2_0522 Alide2_0522 Alide2_0522 545331 546311 - hypothetical protein KEGG: aav:Aave_4265 hypothetical protein gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0522 Alide2_0523 Alide2_0523 Alide2_0523 546516 547154 + flavin reductase domain protein FMN-binding protein KEGG: aav:Aave_4263 flavin reductase domain-containing protein~PFAM: Flavin reductase-like%2C FMN-binding~SMART: Flavin reductase-like%2C FMN-binding gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0523 Alide2_0524 Alide2_0524 Alide2_0524 547151 547939 + transcriptional regulator%2C IclR family KEGG: aav:Aave_4262 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0524 Alide2_0525 Alide2_0525 Alide2_0525 547947 548795 - 3-hydroxybutyryl-CoA dehydrogenase KEGG: ajs:Ajs_3718 3-hydroxybutyryl-CoA dehydrogenase~PFAM: 3-hydroxyacyl-CoA dehydrogenase%2C NAD binding%3B 3-hydroxyacyl-CoA dehydrogenase%2C C-terminal gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0525 Alide2_0526 Alide2_0526 Alide2_0526 548895 550487 + Choline dehydrogenase KEGG: dia:Dtpsy_0477 choline dehydrogenase~PFAM: Glucose-methanol-choline oxidoreductase%2C N-terminal%3B Glucose-methanol-choline oxidoreductase%2C C-terminal gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0526 Alide2_0527 Alide2_0527 Alide2_0527 550604 550873 + pseudogene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0527 Alide2_0528 Alide2_0528 Alide2_0528 550867 551172 - pseudogene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0528 Alide2_0529 Alide2_0529 Alide2_0529 551199 552017 - ABC-2 type transporter%2C NodJ family KEGG: ajs:Ajs_3712 ABC transporter~TIGRFAM: ABC-2 type transporter%2C NodJ~PFAM: ABC-2 type transporter gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0529 Alide2_0530 Alide2_0530 Alide2_0530 552019 552960 - Fe(3+)-transporting ATPase PFAM: ABC transporter-like~KEGG: ajs:Ajs_3711 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0530 Alide2_0531 Alide2_0531 Alide2_0531 553065 554777 - Tannase and feruloyl esterase PFAM: Tannase/feruloyl esterase~KEGG: reu:Reut_A1509 tannase and feruloyl esterase gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0531 Alide2_0532 Alide2_0532 Alide2_0532 554919 556403 - AMP nucleosidase TIGRFAM: AMP nucleosidase~KEGG: aav:Aave_4246 AMP nucleosidase~PFAM: AMP nucleoside phosphorylase%2C N-terminal%3B Nucleoside phosphorylase domain gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0532 Alide2_0533 Alide2_0533 Alide2_0533 556439 558535 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS fold-4%3B PAS fold-3~KEGG: dia:Dtpsy_0486 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0533 Alide2_0534 Alide2_0534 Alide2_0534 558599 559591 + cation diffusion facilitator family transporter KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter~TIGRFAM: Cation efflux protein~PFAM: Cation efflux protein gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0534 Alide2_0535 Alide2_0535 Alide2_0535 559588 560031 + D-tyrosyl-tRNA(Tyr) deacylase TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase~HAMAP: D-tyrosyl-tRNA(Tyr) deacylase~KEGG: dia:Dtpsy_0488 D-tyrosyl-tRNA(Tyr) deacylase~PFAM: D-tyrosyl-tRNA(Tyr) deacylase gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0535 Alide2_0536 Alide2_0536 Alide2_0536 560097 560843 - protein of unknown function DUF81 PFAM: Protein of unknown function DUF81~KEGG: dia:Dtpsy_0490 protein of unknown function DUF81 gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0536 Alide2_0537 Alide2_0537 Alide2_0537 561009 561956 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_1220 LysR family transcriptional regulator gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0537 Alide2_0538 Alide2_0538 Alide2_0538 562061 563032 + hypothetical protein KEGG: dac:Daci_1221 hypothetical protein gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0538 Alide2_0539 Alide2_0539 Alide2_0539 563052 564302 + Formyl-CoA transferase KEGG: dac:Daci_1222 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0539 Alide2_0540 Alide2_0540 Alide2_0540 564335 565321 + quinone oxidoreductase%2C YhdH/YhfP family KEGG: dac:Daci_1223 quinone oxidoreductase~TIGRFAM: Quinone oxidoreductase putative%2C YhdH/YhfP~PFAM: Alcohol dehydrogenase%2C C-terminal%3B Alcohol dehydrogenase GroES-like gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0540 Alide2_0541 Alide2_0541 Alide2_0541 565377 566936 + o-succinylbenzoate--CoA ligase KEGG: reh:H16_B1709 acyl-CoA synthetase~PFAM: AMP-dependent synthetase/ligase gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0541 Alide2_0542 Alide2_0542 Alide2_0542 566953 567405 - metalloprotease ybeY TIGRFAM: Uncharacterised protein family UPF0054%2C metalloprotease YbeY%2C predicted~HAMAP: Uncharacterised protein family UPF0054%2C metalloprotease YbeY%2C predicted~KEGG: ajs:Ajs_3702 hypothetical protein~PFAM: Uncharacterised protein family UPF0054%2C metalloprotease YbeY%2C predicted gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0542 Alide2_0543 Alide2_0543 Alide2_0543 567457 568407 - PhoH family protein PFAM: PhoH-like protein~KEGG: dia:Dtpsy_0492 PhoH family protein gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0543 Alide2_0544 Alide2_0544 Alide2_0544 568455 569027 + Holliday junction DNA helicase RuvA TIGRFAM: Bacterial DNA recombination protein RuvA~PFAM: DNA helicase%2C Holliday junction RuvA type%2C domain I%2C bacterial%3B DNA helicase%2C Holliday junction RuvA type%2C domain III%2C C-terminal~KEGG: dia:Dtpsy_0493 Holliday junction DNA helicase RuvA~SMART: Helix-hairpin-helix DNA-binding motif%2C class 1 gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0544 Alide2_0545 Alide2_0545 Alide2_0545 569065 570546 + endoproteinase Arg-C KEGG: dia:Dtpsy_0494 endoproteinase Arg-C gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0545 Alide2_0546 Alide2_0546 Alide2_0546 570560 573364 - DnaK-related protein KEGG: ajs:Ajs_3698 DnaK-related protein gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0546 Alide2_0547 Alide2_0547 Alide2_0547 573361 575253 - putative heat-shock chaperone protein KEGG: dac:Daci_5720 putative heat-shock chaperone protein gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0547 Alide2_0548 Alide2_0548 Alide2_0548 575250 575855 - hypothetical protein KEGG: dac:Daci_5721 hypothetical protein gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0548 Alide2_0549 Alide2_0549 Alide2_0549 575913 577040 + Holliday junction ATP-dependent DNA helicase ruvB SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: DNA helicase%2C Holliday junction RuvB type~KEGG: dia:Dtpsy_0499 Holliday junction DNA helicase RuvB~HAMAP: DNA helicase%2C Holliday junction RuvB type~PFAM: DNA helicase%2C Holliday junction RuvB type%2C C-terminal%3B ATPase%2C AAA-type%2C core%3B DNA helicase%2C Holliday junction RuvB type%2C N-terminal gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0549 Alide2_0550 Alide2_0550 Alide2_0550 577050 577772 - MgtC/SapB transporter PFAM: MgtC/SapB transporter~KEGG: dac:Daci_1228 MgtC/SapB transporter gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0550 Alide2_0551 Alide2_0551 Alide2_0551 577828 578178 - hypothetical protein gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0551 Alide2_0552 Alide2_0552 Alide2_0552 578286 578480 - hypothetical protein KEGG: ctt:CtCNB1_4283 hypothetical protein gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0552 Alide2_0553 Alide2_0553 Alide2_0553 578824 579987 - alanine racemase domain protein PFAM: Alanine racemase%2C N-terminal~KEGG: dia:Dtpsy_0501 alanine racemase domain protein gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0553 Alide2_0554 Alide2_0554 Alide2_0554 579971 580618 - Phosphoglycerate mutase KEGG: dia:Dtpsy_0502 phosphoglycerate mutase~PFAM: Histidine phosphatase superfamily%2C clade-1~SMART: Histidine phosphatase superfamily%2C clade-1 gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0554 Alide2_0555 Alide2_0555 Alide2_0555 580626 581240 - hypothetical protein KEGG: dia:Dtpsy_0504 hypothetical protein gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0555 Alide2_0556 Alide2_0556 Alide2_0556 581414 582346 - tRNA 2-thiocytidine biosynthesis protein TtcA KEGG: dia:Dtpsy_0505 PP-loop domain protein~HAMAP: 2-thiocytidine tRNA biosynthesis protein%2C TtcA~PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0556 Alide2_0557 Alide2_0557 Alide2_0557 582351 582743 - dihydroneopterin aldolase TIGRFAM: Dihydroneopterin aldolase~PFAM: Dihydroneopterin aldolase~KEGG: dia:Dtpsy_0506 dihydroneopterin aldolase~SMART: Dihydroneopterin aldolase gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0557 Alide2_0558 Alide2_0558 Alide2_0558 582748 583161 - dihydroneopterin aldolase KEGG: dia:Dtpsy_0507 dihydroneopterin aldolase~PFAM: Dihydroneopterin aldolase~SMART: Dihydroneopterin aldolase gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0558 Alide2_0559 Alide2_0559 Alide2_0559 583158 583964 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: bge:BC1002_2951 short-chain dehydrogenase/reductase SDR gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0559 Alide2_0560 Alide2_0560 Alide2_0560 584103 585188 + protein of unknown function DUF185 PFAM: Protein of unknown function DUF185~KEGG: dia:Dtpsy_0510 protein of unknown function DUF185 gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0560 Alide2_0561 Alide2_0561 Alide2_0561 585215 585619 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: rme:Rmet_4030 hypothetical protein gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0561 Alide2_0562 Alide2_0562 Alide2_0562 585623 585817 + hypothetical protein KEGG: dia:Dtpsy_0515 hypothetical protein gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0562 Alide2_0563 Alide2_0563 Alide2_0563 585960 586919 + ROK family protein PFAM: ROK~KEGG: ajs:Ajs_0500 glucokinase gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0563 Alide2_0564 Alide2_0564 Alide2_0564 586880 588271 - Alpha%2Calpha-trehalose-phosphate synthase (UDP-forming) KEGG: ajs:Ajs_0501 alpha%2Calpha-trehalose-phosphate synthase (UDP-forming)~PFAM: Glycosyl transferase%2C family 20 gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0564 Alide2_0565 Alide2_0565 Alide2_0565 588268 590070 - glycoside hydrolase 15-related protein PFAM: Glycoside hydrolase 15-related~KEGG: ajs:Ajs_0502 glycoside hydrolase 15-related gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0565 Alide2_0566 Alide2_0566 Alide2_0566 590076 590831 - trehalose-phosphatase KEGG: dia:Dtpsy_0519 trehalose-phosphatase~TIGRFAM: Trehalose-phosphatase%3B HAD-superfamily hydrolase%2C subfamily IIB~PFAM: Trehalose-phosphatase gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0566 Alide2_0567 Alide2_0567 Alide2_0567 590974 591420 + thioredoxin TIGRFAM: Thioredoxin%3B Zinc finger/thioredoxin putative~KEGG: dia:Dtpsy_0520 thioredoxin~PFAM: Thioredoxin domain gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0567 Alide2_0568 Alide2_0568 Alide2_0568 591409 592656 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase HAMAP: tRNA nucleotidyltransferase%2C proteobacteria~KEGG: dia:Dtpsy_0521 polynucleotide adenylyltransferase/metal dependent phosphohydrolase~PFAM: Poly A polymerase%2C head domain%3B Metal-dependent phosphohydrolase%2C HD subdomain gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0568 Alide2_0569 Alide2_0569 Alide2_0569 592723 593706 + sigma54 specific transcriptional regulator%2C Fis family KEGG: axy:AXYL_01756 acetoacetate metabolism regulatory protein AtoC~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Helix-turn-helix%2C Fis-type~SMART: ATPase%2C AAA+ type%2C core gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0569 Alide2_0570 Alide2_0570 Alide2_0570 593891 595252 + hypothetical protein KEGG: vei:Veis_3993 hypothetical protein gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0570 Alide2_0571 Alide2_0571 Alide2_0571 595267 595587 + hypothetical protein KEGG: axy:AXYL_01758 hypothetical protein gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0571 Alide2_0572 Alide2_0572 Alide2_0572 595625 596596 + hypothetical protein KEGG: vei:Veis_3991 hypothetical protein gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0572 Alide2_0573 Alide2_0573 Alide2_0573 596598 597368 - metallophosphoesterase PFAM: Metallo-dependent phosphatase~KEGG: dia:Dtpsy_0522 metallophosphoesterase gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0573 Alide2_0574 Alide2_0574 Alide2_0574 597387 598073 - Glutathione S-transferase domain protein PFAM: Glutathione S-transferase%2C N-terminal~KEGG: ajs:Ajs_0507 glutathione S-transferase domain-containing protein gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0574 Alide2_0575 Alide2_0575 Alide2_0575 598162 598734 - 5-formyltetrahydrofolate cyclo-ligase KEGG: dia:Dtpsy_0524 5-formyltetrahydrofolate cyclo-ligase~TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase~PFAM: 5-formyltetrahydrofolate cyclo-ligase gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0575 Alide2_0576 Alide2_0576 Alide2_0576 598749 600731 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: dia:Dtpsy_0525 lytic transglycosylase catalytic gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0576 Alide2_0577 Alide2_0577 Alide2_0577 600794 601321 - cytochrome b561 KEGG: ajs:Ajs_0510 cytochrome b561 gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0577 Alide2_0578 Alide2_0578 Alide2_0578 601321 601593 - hypothetical protein KEGG: dia:Dtpsy_0527 putative signal peptide protein gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0578 Alide2_0579 Alide2_0579 Alide2_0579 601730 602413 - PKHD-type hydroxylase ybiX HAMAP: PKHD-type hydroxylase ybiX~PFAM: Oxoglutarate/iron-dependent oxygenase~KEGG: ajs:Ajs_0512 putative hydroxylase~SMART: Prolyl 4-hydroxylase%2C alpha subunit gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0579 Alide2_0580 Alide2_0580 Alide2_0580 602407 603504 - (S)-2-hydroxy-acid oxidase KEGG: ajs:Ajs_0513 (S)-2-hydroxy-acid oxidase~PFAM: FMN-dependent dehydrogenase gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0580 Alide2_0581 Alide2_0581 Alide2_0581 603558 605846 - TonB-dependent receptor PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug~KEGG: ajs:Ajs_0514 TonB-dependent receptor gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0581 Alide2_0582 Alide2_0582 Alide2_0582 606001 606927 - beta-lactamase domain protein KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0582 Alide2_0583 Alide2_0583 Alide2_0583 606946 608631 - Long-chain-fatty-acid--CoA ligase KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0583 Alide2_0584 Alide2_0584 Alide2_0584 608754 609656 + PGAP1 family protein KEGG: dia:Dtpsy_0533 PGAP1 family protein gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0584 Alide2_0585 Alide2_0585 Alide2_0585 609759 610976 - Beta-ketoacyl-acyl-carrier-protein synthase I PFAM: Beta-ketoacyl synthase%2C N-terminal%3B Beta-ketoacyl synthase%2C C-terminal~KEGG: dia:Dtpsy_0542 beta-ketoacyl synthase~SMART: Polyketide synthase%2C beta-ketoacyl synthase domain gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0585 Alide2_0586 Alide2_0586 Alide2_0586 610991 611497 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA~KEGG: dia:Dtpsy_0541 3-hydroxydecanoyl-(acyl carrier protein) dehydratase~PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase%2C FabA/FabZ gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0586 Alide2_0587 Alide2_0587 Alide2_0587 611586 613175 - apolipoprotein N-acyltransferase KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase~TIGRFAM: Apolipoprotein N-acyltransferase~PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0587 Alide2_0588 Alide2_0588 Alide2_0588 613175 614062 - CBS domain containing protein PFAM: Cystathionine beta-synthase%2C core%3B Transporter-associated domain~KEGG: ajs:Ajs_0523 CBS domain-containing protein gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0588 Alide2_0589 Alide2_0589 Alide2_0589 614173 614874 - GCN5-related N-acetyltransferase KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase~manually curated~PFAM: GCN5-related N-acetyltransferase (GNAT) domain gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0589 Alide2_0590 Alide2_0590 Alide2_0590 615025 615510 - transcriptional regulator%2C AsnC family KEGG: dia:Dtpsy_0537 transcriptional regulator%2C AsnC family~PFAM: Transcription regulator AsnC-type%2C C-terminal~SMART: Transcription regulator AsnC-type gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0590 Alide2_0591 Alide2_0591 Alide2_0591 615670 616791 + 4-hydroxyphenylpyruvate dioxygenase TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase~KEGG: ajs:Ajs_0520 4-hydroxyphenylpyruvate dioxygenase~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0591 Alide2_0592 Alide2_0592 Alide2_0592 616793 617617 + phenylalanine-4-hydroxylase TIGRFAM: Phenylalanine-4-hydroxylase%2C monomeric form~KEGG: dia:Dtpsy_0534 phenylalanine 4-monooxygenase~PFAM: Aromatic amino acid hydroxylase%2C C-terminal gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0592 Alide2_0593 Alide2_0593 Alide2_0593 617758 618993 + 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) KEGG: pol:Bpro_0273 branched-chain alpha-keto acid dehydrogenase E1 component~PFAM: Dehydrogenase%2C E1 component%3B 2-oxoisovalerate dehydrogenase%2C E1 alpha subunit%2C N-terminal gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0593 Alide2_0594 Alide2_0594 Alide2_0594 619033 620037 + 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~KEGG: pol:Bpro_0274 branched-chain alpha-keto acid dehydrogenase E1 component~SMART: Transketolase-like%2C pyrimidine-binding domain gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0594 Alide2_0595 Alide2_0595 Alide2_0595 620039 621346 + Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase KEGG: axy:AXYL_02631 lipoamide acyltransferase component of branched-chain alpha-keto aciddehydrogenase complex~PFAM: 2-oxoacid dehydrogenase acyltransferase%2C catalytic domain%3B Biotin/lipoyl attachment%3B E3 binding gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0595 Alide2_0596 Alide2_0596 Alide2_0596 621354 622751 + dihydrolipoamide dehydrogenase TIGRFAM: Dihydrolipoamide dehydrogenase~KEGG: axy:AXYL_02632 dihydrolipoyl dehydrogenase 2~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation%3B Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding region gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0596 Alide2_0597 Alide2_0597 Alide2_0597 622856 623794 + glycyl-tRNA synthetase%2C alpha subunit TIGRFAM: Glycyl-tRNA synthetase%2C class IIc%2C alpha subunit~KEGG: dac:Daci_1288 glycyl-tRNA synthetase subunit alpha~PFAM: Glycyl-tRNA synthetase%2C class IIc%2C alpha subunit gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0597 Alide2_0598 Alide2_0598 Alide2_0598 623814 625979 + Glycyl-tRNA synthetase beta subunit TIGRFAM: Glycyl-tRNA synthetase%2C class IIc%2C beta subunit~HAMAP: Glycyl-tRNA synthetase%2C class IIc%2C beta subunit~KEGG: ajs:Ajs_0528 glycine--tRNA ligase gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0598 Alide2_0599 Alide2_0599 Alide2_0599 626025 626600 + histidinol-phosphate phosphatase family protein TIGRFAM: Histidinol-phosphate phosphatase%3B HAD-superfamily hydrolase%2C subfamily IIIA~KEGG: dia:Dtpsy_0545 histidinol-phosphate phosphatase family protein gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0599 Alide2_0600 Alide2_0600 Alide2_0600 626851 627594 + phospholipid/glycerol acyltransferase KEGG: ajs:Ajs_0530 phospholipid/glycerol acyltransferase~PFAM: Phospholipid/glycerol acyltransferase~SMART: Phospholipid/glycerol acyltransferase gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0600 Alide2_0601 Alide2_0601 Alide2_0601 627597 628400 + protein of unknown function DUF45 PFAM: Protein of unknown function DUF45~KEGG: dia:Dtpsy_0547 protein of unknown function DUF45 gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0601 Alide2_0602 Alide2_0602 Alide2_0602 628461 628895 + Rhodanese-like protein SMART: Rhodanese-like~KEGG: ajs:Ajs_0532 rhodanese domain-containing protein gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0602 Alide2_0603 Alide2_0603 Alide2_0603 628900 629388 - transport-associated protein KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM~PFAM: Transport-associated%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0603 Alide2_0604 Alide2_0604 Alide2_0604 629535 630311 + putative transcriptional acitvator%2C Baf family KEGG: dia:Dtpsy_0550 pantothenate kinase~TIGRFAM: Type III pantothenate kinase~PFAM: Type III pantothenate kinase gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0604 Alide2_0605 Alide2_0605 Alide2_0605 630308 630985 - regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: dia:Dtpsy_0551 transcriptional regulator%2C TetR family gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0605 Alide2_0606 Alide2_0606 Alide2_0606 631143 631586 - poly(hydroxyalkanoate) granule-associated protein KEGG: dia:Dtpsy_0552 poly(hydroxyalkanoate) granule-associated protein~TIGRFAM: Poly granule associated~PFAM: Poly granule associated gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0606 Alide2_0607 Alide2_0607 Alide2_0607 631785 632846 + dTDP-glucose 4%2C6-dehydratase TIGRFAM: dTDP-glucose 4%2C6-dehydratase~KEGG: ajs:Ajs_0537 dTDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0607 Alide2_0608 Alide2_0608 Alide2_0608 632843 633721 + dTDP-4-dehydrorhamnose reductase TIGRFAM: dTDP-4-dehydrorhamnose reductase~KEGG: ajs:Ajs_0538 dTDP-4-dehydrorhamnose reductase~PFAM: dTDP-4-dehydrorhamnose reductase gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0608 Alide2_0609 Alide2_0609 Alide2_0609 633732 634622 + glucose-1-phosphate thymidylyltransferase TIGRFAM: Glucose-1-phosphate thymidylyltransferase%2C long form~KEGG: bvi:Bcep1808_3215 glucose-1-phosphate thymidylyltransferase~PFAM: Nucleotidyl transferase gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0609 Alide2_0610 Alide2_0610 Alide2_0610 634622 635167 + dTDP-4-dehydrorhamnose 3%2C5-epimerase TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase-related~KEGG: dia:Dtpsy_0556 dTDP-4-dehydrorhamnose 3%2C5-epimerase~PFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase-related gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0610 Alide2_0611 Alide2_0611 Alide2_0611 635158 636339 + protein of unknown function DUF1972 PFAM: Domain of unknown function DUF1972%3B Glycosyl transferase%2C group 1~KEGG: gme:Gmet_2169 glycosyltransferase-like protein gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0611 Alide2_0612 Alide2_0612 Alide2_0612 636336 637247 + rhamnosyltransferase KEGG: ajs:Ajs_0541 rhamnosyltransferase~TIGRFAM: Rhamnosyltransferase~PFAM: Glycosyl transferase%2C family 2 gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0612 Alide2_0613 Alide2_0613 Alide2_0613 637255 638958 + type II secretion system protein E PFAM: Type II secretion system protein E%3B General secretory system II%2C protein E%2C N-terminal~KEGG: vei:Veis_0688 general secretory pathway protein E gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0613 Alide2_0614 Alide2_0614 Alide2_0614 638951 640162 + Type II secretion system F domain protein PFAM: Type II secretion system F domain~KEGG: eba:ebA1619 general secretion pathway protein F gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0614 Alide2_0615 Alide2_0615 Alide2_0615 640189 640629 + general secretion pathway protein G KEGG: aav:Aave_4158 general secretion pathway protein G~TIGRFAM: General secretion pathway protein G%3B Prepilin-type cleavage/methylation%2C N-terminal~PFAM: Type II secretion system protein G%3B Prepilin-type cleavage/methylation%2C N-terminal gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0615 Alide2_0616 Alide2_0616 Alide2_0616 640659 641141 + general secretion pathway protein H KEGG: dac:Daci_1302 general secretion pathway protein H gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0616 Alide2_0617 Alide2_0617 Alide2_0617 641138 641539 + general secretion pathway protein I KEGG: aav:Aave_4156 general secretion pathway protein I gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0617 Alide2_0618 Alide2_0618 Alide2_0618 641536 642147 + general secretion pathway protein J KEGG: vei:Veis_0683 general secretion pathway protein J gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0618 Alide2_0619 Alide2_0619 Alide2_0619 642144 643055 + hypothetical protein KEGG: eba:ebA1612 general secretory pathway protein K gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0619 Alide2_0620 Alide2_0620 Alide2_0620 643052 644065 + Fimbrial assembly family protein PFAM: Fimbrial assembly~KEGG: aav:Aave_4153 fimbrial assembly family protein gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0620 Alide2_0621 Alide2_0621 Alide2_0621 644062 644610 + General secretion pathway protein M PFAM: General secretion pathway protein M~KEGG: vei:Veis_0680 general secretion pathway protein M gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0621 Alide2_0622 Alide2_0622 Alide2_0622 644607 644948 + hypothetical protein gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0622 Alide2_0623 Alide2_0623 Alide2_0623 644933 645226 - hypothetical protein KEGG: pol:Bpro_2744 hypothetical protein gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0623 Alide2_0624 Alide2_0624 Alide2_0624 645192 646322 - putative transposase KEGG: pol:Bpro_2745 putative transposase gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0624 Alide2_0625 Alide2_0625 Alide2_0625 646531 647694 + glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: dbr:Deba_0993 glycosyl transferase group 1 gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0625 Alide2_0626 Alide2_0626 Alide2_0626 647765 648589 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: mag:amb1063 ABC-type polysaccharide/polyol phosphate export systems gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0626 Alide2_0627 Alide2_0627 Alide2_0627 648589 649809 + Teichoic-acid-transporting ATPase PFAM: ABC transporter-like~KEGG: vei:Veis_0673 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0627 Alide2_0628 Alide2_0628 Alide2_0628 649791 650702 + hypothetical protein gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0628 Alide2_0629 Alide2_0629 Alide2_0629 650695 651699 + Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: azl:AZL_f01750 hypothetical protein gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0629 Alide2_0630 Alide2_0630 Alide2_0630 651716 652360 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: rso:RSc0977 putative transglycosylase signal peptide protein gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0630 Alide2_0631 Alide2_0631 Alide2_0631 652394 653494 + glycosyl transferase family 4 PFAM: Glycosyl transferase%2C family 4~KEGG: vei:Veis_1227 glycosyl transferase family protein gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0631 Alide2_0632 Alide2_0632 Alide2_0632 653555 654445 + acetylglutamate kinase TIGRFAM: Acetylglutamate kinase~KEGG: ajs:Ajs_0588 acetylglutamate kinase~PFAM: Aspartate/glutamate/uridylate kinase gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0632 Alide2_0633 Alide2_0633 Alide2_0633 654628 655263 + regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: ajs:Ajs_0589 nucleoid occlusion protein gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0633 Alide2_0634 Alide2_0634 Alide2_0634 655405 656061 + regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: dia:Dtpsy_0570 transcriptional regulator%2C TetR family gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0634 Alide2_0635 Alide2_0635 Alide2_0635 656109 657905 + Butyryl-CoA dehydrogenase KEGG: dia:Dtpsy_0571 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0635 Alide2_0636 Alide2_0636 Alide2_0636 657976 658404 + Protein of unknown function DUF2147 KEGG: dia:Dtpsy_0572 hypothetical protein~manually curated~PFAM: Protein of unknown function DUF2147 gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0636 Alide2_0637 Alide2_0637 Alide2_0637 658426 660828 + 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein PFAM: 3-hydroxyacyl-CoA dehydrogenase%2C NAD binding%3B 3-hydroxyacyl-CoA dehydrogenase%2C C-terminal%3B Crotonase%2C core~KEGG: dac:Daci_1339 3-hydroxyacyl-CoA dehydrogenase NAD-binding gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0637 Alide2_0638 Alide2_0638 Alide2_0638 660849 662042 + acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: xtr:100490800 3-ketoacyl-CoA thiolase-like~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0638 Alide2_0639 Alide2_0639 Alide2_0639 662086 662919 + hypothetical protein KEGG: dia:Dtpsy_0576 hypothetical protein gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0639 Alide2_0640 Alide2_0640 Alide2_0640 662927 663703 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: dia:Dtpsy_0577 enoyl-CoA hydratase gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0640 Alide2_0641 Alide2_0641 Alide2_0641 664048 664608 + protein of unknown function DUF583 PFAM: Protein of unknown function DUF583~KEGG: dia:Dtpsy_0579 protein of unknown function DUF583 gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0641 Alide2_0642 Alide2_0642 Alide2_0642 664660 665085 - thioesterase superfamily protein PFAM: Thioesterase superfamily~KEGG: ajs:Ajs_0601 thioesterase superfamily protein gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0642 Alide2_0643 Alide2_0643 Alide2_0643 665128 666939 + Xenobiotic-transporting ATPase PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane domain~KEGG: ajs:Ajs_0602 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0643 Alide2_0644 Alide2_0644 Alide2_0644 666989 667321 + MazG nucleotide pyrophosphohydrolase PFAM: NTP pyrophosphohydrolase MazG%2C putative catalytic core~KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0644 Alide2_0645 Alide2_0645 Alide2_0645 667376 668407 - TRAP dicarboxylate transporter%2C DctP subunit KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter%2C DctP subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0645 Alide2_0646 Alide2_0646 Alide2_0646 668431 669729 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter%2C DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0646 Alide2_0647 Alide2_0647 Alide2_0647 669726 670307 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter%2C DctQ component~KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0647 Alide2_0648 Alide2_0648 Alide2_0648 670474 671421 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_0586 transcriptional regulator%2C LysR family gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0648 Alide2_0649 Alide2_0649 Alide2_0649 671625 672524 + ABC-type transporter%2C periplasmic subunit family 3 KEGG: dia:Dtpsy_0588 extracellular solute-binding protein family 3~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0649 Alide2_0650 Alide2_0650 Alide2_0650 672628 673380 + polar amino acid ABC transporter%2C inner membrane subunit KEGG: dia:Dtpsy_0589 polar amino acid ABC transporter%2C inner membrane subunit~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0650 Alide2_0651 Alide2_0651 Alide2_0651 673382 674053 + polar amino acid ABC transporter%2C inner membrane subunit KEGG: ctt:CtCNB1_4180 glutamate/aspartate transport systempermease protein GltK~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0651 Alide2_0652 Alide2_0652 Alide2_0652 674078 674815 + Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_0591 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0652 Alide2_0653 Alide2_0653 Alide2_0653 674921 675955 - Ornithine cyclodeaminase KEGG: dia:Dtpsy_0592 ornithine cyclodeaminase~PFAM: Ornithine cyclodeaminase/mu-crystallin gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0653 Alide2_0654 Alide2_0654 Alide2_0654 676016 676837 - HAD-superfamily hydrolase%2C subfamily IIB KEGG: ajs:Ajs_0616 HAD family hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIB~PFAM: HAD superfamily hydrolase-like%2C type 3 gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0654 Alide2_0655 Alide2_0655 Alide2_0655 676840 678465 - peptide chain release factor 3 KEGG: xtr:100494427 peptide chain release factor 3-like~TIGRFAM: Peptide chain release factor 3%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2 gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0655 Alide2_0656 Alide2_0656 Alide2_0656 678568 679338 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: rfr:Rfer_0646 short-chain dehydrogenase/reductase SDR gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0656 Alide2_0657 Alide2_0657 Alide2_0657 679580 681010 + adenosylhomocysteinase TIGRFAM: Adenosylhomocysteinase~KEGG: dia:Dtpsy_0597 S-adenosyl-L-homocysteine hydrolase~PFAM: Adenosylhomocysteinase%3B S-adenosyl-L-homocysteine hydrolase%2C NAD binding gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0657 Alide2_0658 Alide2_0658 Alide2_0658 681117 682118 + ribosomal RNA methyltransferase RrmJ/FtsJ PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ~KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0658 Alide2_0659 Alide2_0659 Alide2_0659 682115 682942 + 5%2C10-methylenetetrahydrofolate reductase TIGRFAM: 5%2C10-methylenetetrahydrofolate reductase~KEGG: dia:Dtpsy_0599 5%2C10-methylenetetrahydrofolate reductase~PFAM: Methylenetetrahydrofolate reductase gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0659 Alide2_0660 Alide2_0660 Alide2_0660 682936 683688 + rare lipoprotein A manually curated~TIGRFAM: Rare lipoprotein A%2C bacterial~KEGG: dia:Dtpsy_0601 rare lipoprotein A~PFAM: Barwin-related endoglucanase gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0660 Alide2_0661 Alide2_0661 Alide2_0661 683689 684606 - protein of unknown function DUF519 PFAM: Protein of unknown function DUF519~KEGG: dia:Dtpsy_0602 protein of unknown function DUF519 gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0661 Alide2_0662 Alide2_0662 Alide2_0662 684783 686579 + serine/threonine protein kinase KEGG: ajs:Ajs_0624 protein kinase~PFAM: Serine/threonine-protein kinase-like domain~SMART: Serine/threonine-protein kinase domain%3B Tyrosine-protein kinase%2C catalytic domain gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0662 Alide2_0663 Alide2_0663 Alide2_0663 686685 687152 + ribosomal protein L13 KEGG: xtr:100489998 50S ribosomal protein L13-like~TIGRFAM: Ribosomal protein L13%2C bacterial-type~PFAM: Ribosomal protein L13 gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0663 Alide2_0664 Alide2_0664 Alide2_0664 687162 687554 + ribosomal protein S9 PFAM: Ribosomal protein S9~KEGG: xtr:100487283 30S ribosomal protein S9-like gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0664 Alide2_0665 Alide2_0665 Alide2_0665 687718 688092 + iron-sulfur cluster assembly accessory protein KEGG: dia:Dtpsy_0608 iron-sulfur cluster insertion protein ErpA~TIGRFAM: FeS cluster insertion~PFAM: FeS cluster biogenesis gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0665 Alide2_0666 Alide2_0666 Alide2_0666 688704 689828 - Anhydro-N-acetylmuramic acid kinase manually curated~HAMAP: Anhydro-N-acetylmuramic acid kinase~KEGG: dia:Dtpsy_0609 anhydro-N-acetylmuramic acid kinase~PFAM: Anhydro-N-acetylmuramic acid kinase gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0666 Alide2_0667 Alide2_0667 Alide2_0667 689844 691226 - Peptidase M23 PFAM: Peptidase M23~KEGG: ajs:Ajs_0631 peptidase M23B gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0667 Alide2_0668 Alide2_0668 Alide2_0668 691398 692630 + tyrosyl-tRNA synthetase KEGG: ajs:Ajs_0632 tyrosyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ib%3B RNA-binding S4~manually curated~TIGRFAM: Tyrosyl-tRNA synthetase%2C class Ib~SMART: RNA-binding S4 gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0668 Alide2_0669 Alide2_0669 Alide2_0669 692692 693657 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_0634 LysR family transcriptional regulator gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0669 Alide2_0670 Alide2_0670 Alide2_0670 693709 695133 + UDP-N-acetylglucosamine pyrophosphorylase TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase~KEGG: ajs:Ajs_0636 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase~PFAM: Nucleotidyl transferase%3B Bacterial transferase hexapeptide repeat gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0670 Alide2_0671 Alide2_0671 Alide2_0671 695130 695912 + histidine kinase KEGG: ajs:Ajs_0637 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain~SMART: ATPase-like%2C ATP-binding domain gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0671 Alide2_0672 Alide2_0672 Alide2_0672 695941 696276 - MerR family transcriptional regulator KEGG: dia:Dtpsy_0617 MerR family transcriptional regulator gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0672 Alide2_0673 Alide2_0673 Alide2_0673 696279 697274 - heat shock protein DnaJ domain protein KEGG: dia:Dtpsy_0618 heat shock protein DnaJ domain protein~PFAM: Heat shock protein DnaJ%2C N-terminal%3B Chaperone DnaJ%2C C-terminal~SMART: Heat shock protein DnaJ%2C N-terminal gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0673 Alide2_0674 Alide2_0674 Alide2_0674 697379 697900 - transcriptional regulator%2C AsnC family KEGG: ajs:Ajs_0640 AsnC family transcriptional regulator~PFAM: Transcription regulator AsnC-type%2C C-terminal~SMART: Transcription regulator AsnC-type gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0674 Alide2_0675 Alide2_0675 Alide2_0675 698005 699915 + Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) PFAM: Glutamine amidotransferase%2C class-II%3B Sugar isomerase (SIS)~TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase%2C isomerising~HAMAP: Glucosamine-fructose-6-phosphate aminotransferase%2C isomerising~KEGG: dia:Dtpsy_0620 glucosamine--fructose-6-phosphate aminotransferase gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0675 Alide2_0676 Alide2_0676 Alide2_0676 700592 701395 - IstB domain protein ATP-binding protein KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0676 Alide2_0677 Alide2_0677 Alide2_0677 701385 702911 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: axy:AXYL_06593 integrase family protein 10 gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0677 Alide2_0678 Alide2_0678 Alide2_0678 702997 703221 - transposase IS66 KEGG: ajs:Ajs_2916 transposase IS66 gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0678 Alide2_0679 Alide2_0679 Alide2_0679 703304 703636 - IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2-like~KEGG: rfr:Rfer_2710 IS66 Orf2 like gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0679 Alide2_0680 Alide2_0680 Alide2_0680 703633 704061 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: rfr:Rfer_2709 transposase IS3/IS911 gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0680 Alide2_0681 Alide2_0681 Alide2_0681 704813 705067 - hypothetical protein KEGG: ctt:CtCNB1_4017 hypothetical protein gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0681 Alide2_0682 Alide2_0682 Alide2_0682 705141 705929 - oxidoreductase molybdopterin binding protein PFAM: Oxidoreductase%2C molybdopterin-binding domain~KEGG: ctt:CtCNB1_4018 oxidoreductase%2C molybdopterin binding protein gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0682 Alide2_0683 Alide2_0683 Alide2_0683 705926 706582 - putative transmembrane hydrogenase cytochrome KEGG: ctt:CtCNB1_4019 putative transmembrane hydrogenase cytochrome gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0683 Alide2_0684 Alide2_0684 Alide2_0684 706678 707388 + two component transcriptional regulator%2C winged helix family KEGG: pol:Bpro_0543 two component transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0684 Alide2_0685 Alide2_0685 Alide2_0685 707385 708866 + integral membrane sensor signal transduction histidine kinase KEGG: vap:Vapar_2987 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0685 Alide2_0686 Alide2_0686 Alide2_0686 708884 709231 - hypothetical protein gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0686 Alide2_0687 Alide2_0687 Alide2_0687 709407 710213 - PEP motif putative anchor domain protein TIGRFAM: PEP-CTERM anchor~PFAM: von Willebrand factor%2C type A%3B PEP-CTERM bacterial~KEGG: cja:CJA_0975 von Willebrand factor type A domain protein~SMART: von Willebrand factor%2C type A gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0687 Alide2_0688 Alide2_0688 Alide2_0688 710624 712066 + mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase~KEGG: rfr:Rfer_0711 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase~PFAM: Mannose-6-phosphate isomerase%2C type II%2C C-terminal%3B Nucleotidyl transferase gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0688 Alide2_0689 Alide2_0689 Alide2_0689 712290 712931 + polysaccharide export protein%2C PEP-CTERM sytem-associated KEGG: rfr:Rfer_0658 polysaccharide export protein~TIGRFAM: PEP-CTERM%2C putative polysaccharide export protein~PFAM: Polysaccharide export protein%3B Soluble ligand binding domain gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0689 Alide2_0690 Alide2_0690 Alide2_0690 712978 714540 + polysaccharide chain length determinant protein%2C PEP-CTERM locus subfamily manually curated~TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant~KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis~PFAM: Lipopolysaccharide biosynthesis gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0690 Alide2_0691 Alide2_0691 Alide2_0691 714549 715511 + non-specific protein-tyrosine kinase manually curated~KEGG: app:CAP2UW1_1413 non-specific protein-tyrosine kinase gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0691 Alide2_0692 Alide2_0692 Alide2_0692 715540 717195 + PEP-CTERM system associated protein TIGRFAM: Conserved hypothetical protein CHP03016%2C PEP-CTERM~KEGG: rfr:Rfer_0661 hypothetical protein gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0692 Alide2_0693 Alide2_0693 Alide2_0693 717199 718299 + secretion ATPase%2C PEP-CTERM locus subfamily KEGG: rfr:Rfer_0662 ATPase~TIGRFAM: ATPase%2C secretion system%2C PEP-CTERM%2C predicted~SMART: ATPase%2C AAA+ type%2C core gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0693 Alide2_0694 Alide2_0694 Alide2_0694 718308 719174 + polysaccharide deactylase family protein%2C PEP-CTERM locus subfamily KEGG: app:CAP2UW1_1417 polysaccharide deactylase family protein%2C PEP-Cterm locus subfamily~TIGRFAM: PEP-CTERM locus%2C polysaccharide deactylase~PFAM: Polysaccharide deacetylase gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0694 Alide2_0695 Alide2_0695 Alide2_0695 719182 720228 + FemAB-related protein%2C PEP-CTERM system-associated KEGG: rfr:Rfer_0665 hypothetical protein~manually curated~TIGRFAM: PEP-CTERM system-associated%2C FemAB-related gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0695 Alide2_0696 Alide2_0696 Alide2_0696 720242 721480 + sugar transferase%2C PEP-CTERM/EpsH1 system associated KEGG: dar:Daro_2405 glycosyl transferase%2C group 1~TIGRFAM: Sugar transferase%2C PEP-CTERM%2C Stp1~PFAM: Glycosyl transferase%2C group 1 gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0696 Alide2_0697 Alide2_0697 Alide2_0697 721458 723059 + exosortase 1 KEGG: rfr:Rfer_0666 hypothetical protein~TIGRFAM: Exosortase 1%3B Exosortase%2C EpsH%3B Methanolan biosynthesis EpsI~PFAM: Exosortase EpsH-related gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0697 Alide2_0698 Alide2_0698 Alide2_0698 723062 724972 + exosortase 1 system-associated amidotransferase 1 TIGRFAM: Exosortase 1 system-associated amidotransferase 1%3B Asparagine synthase%2C glutamine-hydrolyzing~KEGG: rfr:Rfer_0669 asparagine synthase%2C glutamine-hydrolyzing~PFAM: Asparagine synthase%3B Glutamine amidotransferase%2C class-II gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0698 Alide2_0699 Alide2_0699 Alide2_0699 724965 726119 + sugar transferase%2C PEP-CTERM/EpsH1 system associated KEGG: rfr:Rfer_0668 glycosyl transferase%2C group 1~TIGRFAM: Sugar transferase%2C PEP-CTERM%2C Stp2~PFAM: Glycosyl transferase%2C group 1 gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0699 Alide2_0700 Alide2_0700 Alide2_0700 726121 727275 + glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: rru:Rru_A3107 glycosyl transferase%2C group 1 gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0700 Alide2_0701 Alide2_0701 Alide2_0701 727275 728456 + glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: hse:Hsero_2751 glycosyltransferase 1 protein gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0701 Alide2_0702 Alide2_0702 Alide2_0702 728443 730065 + 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein KEGG: tmz:Tmz1t_3254 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0702 Alide2_0703 Alide2_0703 Alide2_0703 730090 730221 + hypothetical protein gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0703 Alide2_0704 Alide2_0704 Alide2_0704 730256 731587 + wzy family polymerase%2C exosortase system type 1 associated TIGRFAM: Conserved hypothetical protein CHP03097%2C O-antigen ligase-related~KEGG: hse:Hsero_2764 O-antigen polymerase gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0704 Alide2_0705 Alide2_0705 Alide2_0705 731584 732546 + polysaccharide deacetylase PFAM: Polysaccharide deacetylase~KEGG: neu:NE0847 hypothetical protein gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0705 Alide2_0706 Alide2_0706 Alide2_0706 732543 733556 + polysaccharide deacetylase PFAM: Polysaccharide deacetylase~KEGG: tgr:Tgr7_2375 polysaccharide deacetylase gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0706 Alide2_0707 Alide2_0707 Alide2_0707 733568 734605 + hypothetical protein KEGG: psl:Psta_3837 hypothetical protein gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0707 Alide2_0708 Alide2_0708 Alide2_0708 734606 735553 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: tkm:TK90_2524 glycosyl transferase family 2 gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0708 Alide2_0709 Alide2_0709 Alide2_0709 735666 737087 - polysaccharide biosynthesis protein PFAM: Polysaccharide biosynthesis protein~KEGG: nwa:Nwat_1744 polysaccharide biosynthesis protein gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0709 Alide2_0710 Alide2_0710 Alide2_0710 737184 738281 - UDP-glucose 4-epimerase KEGG: pol:Bpro_3996 NAD-dependent epimerase/dehydratase~PFAM: NAD-dependent epimerase/dehydratase gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0710 Alide2_0711 Alide2_0711 Alide2_0711 738308 739585 - nucleotide sugar dehydrogenase manually curated~TIGRFAM: Nucleotide sugar dehydrogenase~KEGG: reu:Reut_B5375 UDP-glucose/GDP-mannose dehydrogenase~PFAM: UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal%3B UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation%3B UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0711 Alide2_0712 Alide2_0712 Alide2_0712 740089 741981 - hypothetical protein KEGG: hse:Hsero_2760 hypothetical protein gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0712 Alide2_0713 Alide2_0713 Alide2_0713 742681 743748 + hypothetical protein manually curated~KEGG: hse:Hsero_2738 hypothetical protein gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0713 Alide2_0714 Alide2_0714 Alide2_0714 743851 744609 - PEP motif putative anchor domain protein KEGG: cyt:cce_4547 hypothetical protein~TIGRFAM: PEP-CTERM anchor~PFAM: PEP-CTERM bacterial gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0714 Alide2_0715 Alide2_0715 Alide2_0715 744804 745646 - hydrolase%2C exosortase system type 1 associated KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family protein~TIGRFAM: Hydrolase%2C ortholog 1%2C exosortase system type 1 associated~PFAM: Alpha/beta hydrolase fold-1 gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0715 Alide2_0716 Alide2_0716 Alide2_0716 745643 746497 - hydrolase%2C exosortase system type 1 associated TIGRFAM: Hydrolase%2C ortholog 2%2C exosortase system type 1 associated~KEGG: app:CAP2UW1_4344 hydrolase%2C exosortase system type 1 associated gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0716 Alide2_0717 Alide2_0717 Alide2_0717 746499 746759 - hypothetical protein KEGG: rfr:Rfer_0698 hypothetical protein gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0717 Alide2_0718 Alide2_0718 Alide2_0718 746843 748489 + acyl-CoA ligase (AMP-forming)%2C exosortase system type 1 associated TIGRFAM: Acyl-CoA ligase (AMP-forming)%2C exosortase system type 1 associated~KEGG: app:CAP2UW1_1626 acyl-CoA ligase (AMP-forming)%2C exosortase system type 1 associated~PFAM: AMP-dependent synthetase/ligase gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0718 Alide2_0719 Alide2_0719 Alide2_0719 748476 749681 + pyridoxal-dependent decarboxylase%2C exosortase system type 1 associated TIGRFAM: Pyridoxal-dependent decarboxylase%2C exosortase system type 1 associated~KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2~PFAM: Orn/DAP/Arg decarboxylase 2%2C C-terminal%3B Orn/DAP/Arg decarboxylase 2%2C N-terminal gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0719 Alide2_0720 Alide2_0720 Alide2_0720 749684 751765 + multi-sensor signal transduction histidine kinase TIGRFAM: Signal transduction histidine kinase%2C PEP-CTERM system%2C putative~PFAM: ATPase-like%2C ATP-binding domain%3B GAF%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~KEGG: rfr:Rfer_0703 periplasmic sensor signal transduction histidine kinase~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0720 Alide2_0721 Alide2_0721 Alide2_0721 751774 753135 + two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family TIGRFAM: Signal transduction response regulator%2C PEP-CTERM system%2C putative~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver domain%3B Helix-turn-helix%2C Fis-type~KEGG: rfr:Rfer_0704 two component%2C sigma54 specific%2C fis family transcriptional regulator~SMART: Signal transduction response regulator%2C receiver domain%3B ATPase%2C AAA+ type%2C core gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0721 Alide2_0722 Alide2_0722 Alide2_0722 753159 755939 + PEP-CTERM system TPR-repeat lipoprotein KEGG: rfr:Rfer_0705 tetratricopeptide TPR_2~TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein%2C putative~PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-4%3B Tetratricopeptide TPR-1 gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0722 Alide2_0723 Alide2_0723 Alide2_0723 755989 756774 + peptidase S1 and S6 chymotrypsin/Hap PFAM: Peptidase S1/S6%2C chymotrypsin/Hap~KEGG: rfr:Rfer_0710 peptidase S1 and S6%2C chymotrypsin/Hap gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0723 Alide2_0724 Alide2_0724 Alide2_0724 756802 757167 - putative small multi-drug resistant family protein KEGG: azo:azo0349 putative small multi-drug resistant family protein gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0724 Alide2_0725 Alide2_0725 Alide2_0725 757164 758612 - UbiA prenyltransferase PFAM: UbiA prenyltransferase~KEGG: azo:azo0348 hypothetical protein gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0725 Alide2_0726 Alide2_0726 Alide2_0726 758662 759555 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_4993 LysR family transcriptional regulator gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0726 Alide2_0727 Alide2_0727 Alide2_0727 759717 760718 + hypothetical protein KEGG: dac:Daci_4992 hypothetical protein gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0727 Alide2_0728 Alide2_0728 Alide2_0728 760730 762007 + hypothetical protein KEGG: ctt:CtCNB1_3962 hypothetical protein gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0728 Alide2_0729 Alide2_0729 Alide2_0729 762015 762275 - Translation initiation factor IF-1 TIGRFAM: Translation initiation factor IF-1~HAMAP: Translation initiation factor IF-1~KEGG: dia:Dtpsy_0625 translation initiation factor IF-1~PFAM: RNA-binding domain%2C S1%2C IF1 type gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0729 Alide2_0730 Alide2_0730 Alide2_0730 762626 763279 - 2OG-Fe(II) oxygenase PFAM: Oxoglutarate/iron-dependent oxygenase~KEGG: dia:Dtpsy_0631 2OG-Fe(II) oxygenase gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0730 Alide2_0731 Alide2_0731 Alide2_0731 763370 764878 + o-succinylbenzoate--CoA ligase KEGG: ajs:Ajs_0653 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0731 Alide2_0732 Alide2_0732 Alide2_0732 764975 765694 + oxidoreductase FAD/NAD(P)-binding domain protein PFAM: Oxidoreductase FAD/NAD(P)-binding%3B Oxidoreductase%2C FAD-binding domain~KEGG: ctt:CtCNB1_2425 FAD-binding oxidoreductase gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0732 Alide2_0733 Alide2_0733 Alide2_0733 765688 767277 - hypothetical protein KEGG: vap:Vapar_3422 hypothetical protein gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0733 Alide2_0734 Alide2_0734 Alide2_0734 767289 767897 - peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin PFAM: Peptidase M15B/M15C%2C D%2CD-carboxypeptidase VanY/endolysins%3B Peptidoglycan binding-like~KEGG: pph:Ppha_2260 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0734 Alide2_0735 Alide2_0735 Alide2_0735 768068 768739 + DSBA oxidoreductase PFAM: DSBA-like thioredoxin domain~KEGG: ajs:Ajs_0654 DsbA oxidoreductase gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0735 Alide2_0736 Alide2_0736 Alide2_0736 768811 769293 - CreA family protein PFAM: Uncharacterised protein family CreA~KEGG: dia:Dtpsy_0634 CreA family protein gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0736 Alide2_0737 Alide2_0737 Alide2_0737 769290 771881 - cyanophycin synthetase TIGRFAM: Cyanophycin synthetase~KEGG: dia:Dtpsy_0635 cyanophycin synthetase~PFAM: Mur ligase%2C central%3B ATP-grasp fold%2C ATP-dependent carboxylate-amine ligase-type%3B Mur ligase%2C C-terminal gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0737 Alide2_0738 Alide2_0738 Alide2_0738 771953 774133 - cyanophycin synthetase TIGRFAM: Cyanophycin synthetase~KEGG: ctt:CtCNB1_0610 cyanophycin synthetase~PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0738 Alide2_0739 Alide2_0739 Alide2_0739 774383 776695 + Xenobiotic-transporting ATPase PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane domain~KEGG: dia:Dtpsy_0637 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0739 Alide2_0740 Alide2_0740 Alide2_0740 776710 777198 + Domain of unknown function DUF1854 PFAM: Domain of unknown function DUF1854~KEGG: dia:Dtpsy_0638 hypothetical protein gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0740 Alide2_0741 Alide2_0741 Alide2_0741 777339 777779 + hypothetical protein KEGG: dia:Dtpsy_0639 hypothetical protein gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0741 Alide2_0742 Alide2_0742 Alide2_0742 777903 779957 + small GTP-binding protein TIGRFAM: Small GTP-binding protein~PFAM: Translation elongation factor EFG/EF2%2C domain IV%3B Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFG/EF2%2C C-terminal~KEGG: vap:Vapar_5542 elongation factor G~SMART: Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFG/EF2%2C C-terminal gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0742 Alide2_0743 Alide2_0743 Alide2_0743 779971 780903 - 5'-nucleotidase KEGG: vei:Veis_1630 5-nucleotidase~PFAM: 5-nucleotidase gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0743 Alide2_0744 Alide2_0744 Alide2_0744 780908 782137 - general secretion pathway protein F KEGG: dia:Dtpsy_0642 general secretion pathway protein F~TIGRFAM: General secretion pathway protein F~PFAM: Type II secretion system F domain gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0744 Alide2_0745 Alide2_0745 Alide2_0745 782192 783187 - luciferase family oxidoreductase%2C group 1 KEGG: ajs:Ajs_0664 luciferase family protein~TIGRFAM: Luciferase family oxidoreductase%2C group 1~PFAM: Luciferase-like%2C subgroup gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0745 Alide2_0746 Alide2_0746 Alide2_0746 783376 783903 + hypothetical protein KEGG: ajs:Ajs_0665 hypothetical protein gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0746 Alide2_0747 Alide2_0747 Alide2_0747 783913 785313 - general secretory pathway protein E TIGRFAM: Type II secretion system GspE~PFAM: Type II secretion system protein E~KEGG: dia:Dtpsy_0645 general secretory pathway protein E~SMART: ATPase%2C AAA+ type%2C core gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0747 Alide2_0748 Alide2_0748 Alide2_0748 785324 787657 - general secretion pathway protein D KEGG: dia:Dtpsy_0646 general secretion pathway protein D~TIGRFAM: Type II secretion system GspD~PFAM: Type II/III secretion system%3B NolW-like gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0748 Alide2_0749 Alide2_0749 Alide2_0749 787662 788477 - putative general secretory pathway N transmembrane protein KEGG: ajs:Ajs_0668 putative general secretory pathway N transmembrane protein gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0749 Alide2_0750 Alide2_0750 Alide2_0750 788511 789020 - General secretion pathway M protein PFAM: General secretion pathway M protein~KEGG: ajs:Ajs_0669 hypothetical protein gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0750 Alide2_0751 Alide2_0751 Alide2_0751 789017 790249 - General secretion pathway L PFAM: General secretion pathway L~KEGG: ajs:Ajs_0670 general secretion pathway L gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0751 Alide2_0752 Alide2_0752 Alide2_0752 790317 791294 - general secretion pathway protein K KEGG: ajs:Ajs_0671 general secretion pathway protein K gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0752 Alide2_0753 Alide2_0753 Alide2_0753 791291 791980 - hypothetical protein KEGG: ajs:Ajs_0672 hypothetical protein gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0753 Alide2_0754 Alide2_0754 Alide2_0754 791982 792347 - general secretion pathway protein I KEGG: dia:Dtpsy_0652 general secretion pathway protein I~TIGRFAM: General secretion pathway protein I%3B Prepilin-type cleavage/methylation%2C N-terminal~PFAM: Type II secretion system protein I/J%3B Prepilin-type cleavage/methylation%2C N-terminal gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0754 Alide2_0755 Alide2_0755 Alide2_0755 792616 793080 - general secretion pathway protein H KEGG: dia:Dtpsy_0653 general secretion pathway protein H~manually curated~TIGRFAM: Bacterial general secretion pathway protein H%3B Prepilin-type cleavage/methylation%2C N-terminal gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0755 Alide2_0756 Alide2_0756 Alide2_0756 793153 793560 - general secretion pathway protein G KEGG: aav:Aave_0925 general secretion pathway protein G~TIGRFAM: General secretion pathway protein G%3B Prepilin-type cleavage/methylation%2C N-terminal~PFAM: Type II secretion system protein G%3B Prepilin-type cleavage/methylation%2C N-terminal gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0756 Alide2_0757 Alide2_0757 Alide2_0757 793661 794107 + hypothetical protein KEGG: dia:Dtpsy_0655 hypothetical protein gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0757 Alide2_0758 Alide2_0758 Alide2_0758 794108 794674 - Phosphoglycerate mutase KEGG: dia:Dtpsy_0656 phosphoglycerate mutase~PFAM: Histidine phosphatase superfamily%2C clade-1~SMART: Histidine phosphatase superfamily%2C clade-1 gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0758 Alide2_0759 Alide2_0759 Alide2_0759 794671 795489 - cobalamin-5-phosphate synthase CobS PFAM: Cobalamin (vitamin B12) biosynthesis CobS%2C cobalamin-5-phosphate synthase~KEGG: dia:Dtpsy_0657 cobalamin-5-phosphate synthase CobS gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0759 Alide2_0760 Alide2_0760 Alide2_0760 795552 797117 - threonine dehydratase%2C biosynthetic KEGG: dia:Dtpsy_0658 threonine dehydratase~TIGRFAM: Threonine dehydratase I~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit%3B Threonine dehydratase%2C C-terminal gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0760 Alide2_0761 Alide2_0761 Alide2_0761 797399 797848 + OsmC family protein PFAM: Peroxiredoxin%2C OsmC-like protein~KEGG: dia:Dtpsy_0659 OsmC family protein gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0761 Alide2_0762 Alide2_0762 Alide2_0762 797859 798476 - putative ubiquinone biosynthesis protein KEGG: dia:Dtpsy_0660 putative ubiquinone biosynthesis protein gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0762 Alide2_0763 Alide2_0763 Alide2_0763 798705 799745 + porin KEGG: aav:Aave_0932 porin gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0763 Alide2_0764 Alide2_0764 Alide2_0764 799967 801178 + porin Gram-negative type PFAM: Porin%2C Gram-negative type~KEGG: dia:Dtpsy_0662 porin gram-negative type gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0764 Alide2_0765 Alide2_0765 Alide2_0765 801427 802410 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: dia:Dtpsy_0664 binding-protein-dependent transport systems inner membrane component gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0765 Alide2_0766 Alide2_0766 Alide2_0766 802412 803632 + amidohydrolase TIGRFAM: Peptidase M20D%2C amidohydrolase~KEGG: dia:Dtpsy_0665 amidohydrolase~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0766 Alide2_0767 Alide2_0767 Alide2_0767 803710 804621 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: dia:Dtpsy_0667 binding-protein-dependent transport systems inner membrane component gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0767 Alide2_0768 Alide2_0768 Alide2_0768 804628 805602 + oligopeptide/dipeptide ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal~KEGG: dia:Dtpsy_0668 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: Oligopeptide/dipeptide ABC transporter%2C C-terminal%3B ABC transporter-like gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0768 Alide2_0769 Alide2_0769 Alide2_0769 805599 806615 + oligopeptide/dipeptide ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal~KEGG: dia:Dtpsy_0669 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter-like%3B Oligopeptide/dipeptide ABC transporter%2C C-terminal gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0769 Alide2_0770 Alide2_0770 Alide2_0770 806658 807152 + YbhB YbcL family protein KEGG: dia:Dtpsy_0671 PEBP family protein~TIGRFAM: YbhB/YbcL~PFAM: Phosphatidylethanolamine-binding protein PEBP gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0770 Alide2_0771 Alide2_0771 Alide2_0771 807204 808049 - transcriptional regulator%2C RpiR family PFAM: Helix-turn-helix protein RpiR%3B Sugar isomerase (SIS)~KEGG: ajs:Ajs_0694 RpiR family transcriptional regulator gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0771 Alide2_0772 Alide2_0772 Alide2_0772 808165 809115 + transaldolase KEGG: dia:Dtpsy_0674 transaldolase B~TIGRFAM: Transaldolase 1~PFAM: Transaldolase gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0772 Alide2_0773 Alide2_0773 Alide2_0773 809112 810707 + Glucose-6-phosphate isomerase KEGG: ajs:Ajs_0697 glucose-6-phosphate isomerase~PFAM: Phosphoglucose isomerase (PGI) gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0773 Alide2_0774 Alide2_0774 Alide2_0774 810830 812476 - chaperonin GroEL KEGG: aav:Aave_0945 chaperonin GroEL~TIGRFAM: Chaperonin Cpn60~PFAM: Chaperonin Cpn60/TCP-1 gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0774 Alide2_0775 Alide2_0775 Alide2_0775 812574 812864 - Chaperonin Cpn10 KEGG: dac:Daci_5660 co-chaperonin GroES~PFAM: Chaperonin Cpn10~SMART: Chaperonin Cpn10 gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0775 Alide2_0776 Alide2_0776 Alide2_0776 813066 814094 - cytidyltransferase-related domain protein KEGG: ajs:Ajs_0701 cytidyltransferase-like protein~TIGRFAM: Cytidyltransferase-related~PFAM: NUDIX hydrolase domain%3B Cytidylyltransferase gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0776 Alide2_0777 Alide2_0777 Alide2_0777 814108 815289 - S-adenosylmethionine synthetase TIGRFAM: S-adenosylmethionine synthetase~KEGG: dia:Dtpsy_0683 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase%2C C-terminal%3B S-adenosylmethionine synthetase%2C central domain%3B S-adenosylmethionine synthetase%2C N-terminal gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0777 Alide2_0778 Alide2_0778 Alide2_0778 815423 816277 + lipid A biosynthesis acyltransferase PFAM: Bacterial lipid A biosynthesis acyltransferase~KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0778 Alide2_0779 Alide2_0779 Alide2_0779 816274 817155 + lipid A biosynthesis acyltransferase PFAM: Bacterial lipid A biosynthesis acyltransferase~KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0779 Alide2_0780 Alide2_0780 Alide2_0780 817196 818098 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: vei:Veis_1352 LysR family transcriptional regulator gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0780 Alide2_0781 Alide2_0781 Alide2_0781 818195 819175 + fis family transcriptional regulator KEGG: vei:Veis_1351 fis family transcriptional regulator gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0781 Alide2_0782 Alide2_0782 Alide2_0782 819190 820170 + hypothetical protein KEGG: cti:RALTA_B1946 conserved hypothetical protein UPF0065 gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0782 Alide2_0783 Alide2_0783 Alide2_0783 820197 821258 + 3-isopropylmalate dehydrogenase KEGG: vei:Veis_1349 3-isopropylmalate dehydrogenase~PFAM: Isocitrate/isopropylmalate dehydrogenase gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0783 Alide2_0784 Alide2_0784 Alide2_0784 821258 822079 + amidohydrolase 2 PFAM: Amidohydrolase 2~KEGG: bbt:BBta_3003 hypothetical protein gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0784 Alide2_0785 Alide2_0785 Alide2_0785 822067 822759 - GTP-binding protein engB TIGRFAM: GTP-binding protein%2C ribosome biogenesis%2C YsxC~HAMAP: GTP-binding protein%2C ribosome biogenesis%2C YsxC~KEGG: aav:Aave_0983 ribosome biogenesis GTP-binding protein YsxC~PFAM: GTP-binding protein%2C HSR1-related gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0785 Alide2_0786 Alide2_0786 Alide2_0786 822842 823480 + cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: ajs:Ajs_0710 cytochrome c%2C class I gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0786 Alide2_0787 Alide2_0787 Alide2_0787 823609 825807 + ResB family protein PFAM: Cytochrome c biogenesis protein~KEGG: dia:Dtpsy_0691 ResB family protein gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0787 Alide2_0788 Alide2_0788 Alide2_0788 825804 827138 + cytochrome c-type biogenesis protein CcsB KEGG: ajs:Ajs_0712 cytochrome c assembly protein~TIGRFAM: Cytochrome c-type biogenesis protein CcsA~PFAM: Cytochrome c assembly protein gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0788 Alide2_0789 Alide2_0789 Alide2_0789 827312 828310 + oxidoreductase molybdopterin binding protein PFAM: Oxidoreductase%2C molybdopterin-binding domain~KEGG: dia:Dtpsy_0693 putative sulfite oxidase subunit YedY gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0789 Alide2_0790 Alide2_0790 Alide2_0790 828310 828951 + Sulfoxide reductase heme-binding subunit yedZ KEGG: dia:Dtpsy_0694 ferric reductase domain protein transmembrane component~HAMAP: Sulphoxide reductase heme-binding subunit YedZ~PFAM: Flavoprotein transmembrane component gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0790 Alide2_0791 Alide2_0791 Alide2_0791 829037 829840 - beta-lactamase domain protein KEGG: dia:Dtpsy_0695 beta-lactamase domain protein~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0791 Alide2_0792 Alide2_0792 Alide2_0792 829909 831198 - diaminopimelate decarboxylase TIGRFAM: Diaminopimelate decarboxylase~KEGG: dia:Dtpsy_0696 diaminopimelate decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2%2C N-terminal%3B Orn/DAP/Arg decarboxylase 2%2C C-terminal gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0792 Alide2_0793 Alide2_0793 Alide2_0793 831195 831407 - hypothetical protein manually curated~KEGG: ajs:Ajs_0717 hypothetical protein gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0793 Alide2_0794 Alide2_0794 Alide2_0794 831420 831749 + Protein cyaY TIGRFAM: Frataxin-like~HAMAP: Frataxin-like~KEGG: ajs:Ajs_0728 frataxin family protein~PFAM: Frataxin-like gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0794 Alide2_0795 Alide2_0795 Alide2_0795 831756 834071 - penicillin-binding protein%2C 1A family KEGG: dia:Dtpsy_0698 penicillin-binding protein%2C 1A family~TIGRFAM: Penicillin-binding protein 1A~PFAM: Glycosyl transferase%2C family 51%3B Penicillin-binding protein%2C transpeptidase gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0795 Alide2_0796 Alide2_0796 Alide2_0796 834398 835468 + type IV pilus assembly protein PilM TIGRFAM: Type IV pilus assembly protein PilM~KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0796 Alide2_0797 Alide2_0797 Alide2_0797 835465 836076 + Fimbrial assembly family protein PFAM: Fimbrial assembly~KEGG: ajs:Ajs_0731 fimbrial assembly family protein gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0797 Alide2_0798 Alide2_0798 Alide2_0798 836073 836756 + pilus assembly protein%2C PilO KEGG: ajs:Ajs_0732 pilus assembly protein%2C PilO gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0798 Alide2_0799 Alide2_0799 Alide2_0799 836753 837310 + Pilus assembly protein PilP PFAM: Pilus assembly protein PilP~KEGG: dia:Dtpsy_0702 pilus assembly protein PilP gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0799 Alide2_0800 Alide2_0800 Alide2_0800 837307 839448 + type IV pilus secretin PilQ TIGRFAM: Type IV pilus secretin PilQ~PFAM: Type II/III secretion system%3B NolW-like%3B Secretin/TonB%2C short N-terminal~KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ~SMART: Secretin/TonB%2C short N-terminal gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0800 Alide2_0801 Alide2_0801 Alide2_0801 839470 841017 + Ig family protein PFAM: Putative Ig~KEGG: eba:ebA2288 hypothetical protein gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0801 Alide2_0802 Alide2_0802 Alide2_0802 841141 842259 + 3-dehydroquinate synthase PFAM: 3-dehydroquinate synthase AroB~TIGRFAM: 3-dehydroquinate synthase AroB%2C subgroup~HAMAP: 3-dehydroquinate synthase AroB%2C subgroup~KEGG: dia:Dtpsy_0704 3-dehydroquinate synthase gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0802 Alide2_0803 Alide2_0803 Alide2_0803 842317 843489 + Deoxyguanosinetriphosphate triphosphohydrolase-like protein SMART: Metal-dependent phosphohydrolase%2C HD domain~TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase~KEGG: ajs:Ajs_0736 deoxyguanosinetriphosphate triphosphohydrolase-like protein~HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase%2C type 2~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0803 Alide2_0804 Alide2_0804 Alide2_0804 843521 844141 + protein of unknown function DUF1415 PFAM: Protein of unknown function DUF1415~KEGG: dia:Dtpsy_0706 protein of unknown function DUF1415 gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0804 Alide2_0805 Alide2_0805 Alide2_0805 844138 845010 + hypothetical protein KEGG: dia:Dtpsy_0707 hypothetical protein gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0805 Alide2_0806 Alide2_0806 Alide2_0806 845126 846631 - methylmalonate-semialdehyde dehydrogenase TIGRFAM: Methylmalonate-semialdehyde dehydrogenase~KEGG: xtr:100496453 methylmalonate-semialdehyde dehydrogenase [acylating]%2C mitochondrial-like~PFAM: Aldehyde dehydrogenase domain gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0806 Alide2_0807 Alide2_0807 Alide2_0807 846646 847863 - branched-chain amino acid ABC transporter periplasmic protein KEGG: hse:Hsero_3068 branched-chain amino acid ABC transporter periplasmic protein gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0807 Alide2_0808 Alide2_0808 Alide2_0808 847997 848922 + pseudogene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0808 Alide2_0809 Alide2_0809 Alide2_0809 848989 849699 + transposase IS200-family protein PFAM: Transposase IS200-like~KEGG: vap:Vapar_1151 protein of unknown function DUF1568 gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0809 Alide2_0810 Alide2_0810 Alide2_0810 849869 854602 + Glutamate synthase (ferredoxin) KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit~PFAM: Glutamate synthase%2C central-C%3B Glutamine amidotransferase%2C class-II%3B Glutamate synthase%2C central-N%3B Glutamate synthase%2C alpha subunit%2C C-terminal gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0810 Alide2_0811 Alide2_0811 Alide2_0811 854643 856121 + glutamate synthase%2C NADH/NADPH%2C small subunit TIGRFAM: Glutamate synthase%2C NADH/NADPH%2C small subunit 1~KEGG: dia:Dtpsy_0710 glutamate synthase subunit beta~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding region gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0811 Alide2_0812 Alide2_0812 Alide2_0812 856326 857123 + ABC-type transporter%2C periplasmic subunit family 3 KEGG: ajs:Ajs_0743 extracellular solute-binding protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0812 Alide2_0813 Alide2_0813 Alide2_0813 857185 857841 + polar amino acid ABC transporter%2C inner membrane subunit KEGG: ajs:Ajs_0744 polar amino acid ABC transporter%2C inner membrane subunit~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0813 Alide2_0814 Alide2_0814 Alide2_0814 857822 858601 + Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_0713 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0814 Alide2_0815 Alide2_0815 Alide2_0815 858625 859929 + hypothetical protein KEGG: vei:Veis_4017 hypothetical protein gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0815 Alide2_0816 Alide2_0816 Alide2_0816 860031 860990 - Spermidine synthase HAMAP: Spermine synthase~KEGG: ajs:Ajs_0746 spermidine synthase~PFAM: Spermine synthase gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0816 Alide2_0817 Alide2_0817 Alide2_0817 860990 861400 - S-adenosylmethionine decarboxylase proenzyme KEGG: dia:Dtpsy_0715 S-adenosylmethionine decarboxylase proenzyme~TIGRFAM: S-adenosylmethionine decarboxylase proenzyme~PFAM: S-adenosylmethionine decarboxylase%2C bacterial/archaeal gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0817 Alide2_0818 Alide2_0818 Alide2_0818 861767 862615 + Sulfate-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_0716 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0818 Alide2_0819 Alide2_0819 Alide2_0819 862612 863394 + protein of unknown function DUF140 KEGG: dia:Dtpsy_0717 protein of unknown function DUF140~TIGRFAM: Domain of unknown function DUF140~PFAM: Domain of unknown function DUF140 gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0819 Alide2_0820 Alide2_0820 Alide2_0820 863429 863917 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry-related~KEGG: dia:Dtpsy_0718 mammalian cell entry related domain protein gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0820 Alide2_0821 Alide2_0821 Alide2_0821 863914 864654 + VacJ family lipoprotein PFAM: VacJ-like lipoprotein~KEGG: ajs:Ajs_0751 VacJ family lipoprotein gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0821 Alide2_0822 Alide2_0822 Alide2_0822 864772 865434 + toluene tolerance family protein PFAM: Toluene tolerance Ttg2~KEGG: dia:Dtpsy_0720 toluene tolerance family protein gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0822 Alide2_0823 Alide2_0823 Alide2_0823 865452 865724 + sulfate transporter/antisigma-factor antagonist STAS KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0823 Alide2_0824 Alide2_0824 Alide2_0824 865788 867083 + diguanylate cyclase with PAS/PAC sensor TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate cyclase%2C predicted%3B PAS fold-4~KEGG: gpb:HDN1F_11000 hypothetical protein~SMART: Diguanylate cyclase%2C predicted%3B PAS%3B PAC motif gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0824 Alide2_0825 Alide2_0825 Alide2_0825 867165 868085 + Polyamine-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_0722 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0825 Alide2_0826 Alide2_0826 Alide2_0826 868082 868837 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: aav:Aave_1020 ABC-2 type transporter gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0826 Alide2_0827 Alide2_0827 Alide2_0827 868851 869099 + BolA family protein PFAM: BolA protein~KEGG: dia:Dtpsy_0724 BolA family protein gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0827 Alide2_0828 Alide2_0828 Alide2_0828 869124 870398 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase PFAM: Enolpyruvate transferase domain~TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~KEGG: ctt:CtCNB1_0710 UDP-N-acetylglucosamine gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0828 Alide2_0829 Alide2_0829 Alide2_0829 870395 871045 + ATP phosphoribosyltransferase TIGRFAM: ATP phosphoribosyltransferase%2C catalytic domain~KEGG: dia:Dtpsy_0726 ATP phosphoribosyltransferase catalytic subunit~PFAM: ATP phosphoribosyltransferase%2C catalytic domain gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0829 Alide2_0830 Alide2_0830 Alide2_0830 871050 872366 + histidinol dehydrogenase TIGRFAM: Histidinol dehydrogenase%2C prokaryotic-type~KEGG: aav:Aave_1024 histidinol dehydrogenase~PFAM: Histidinol dehydrogenase%2C prokaryotic-type gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0830 Alide2_0831 Alide2_0831 Alide2_0831 872486 873213 + hypothetical protein pseudogene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0831 Alide2_0833 Alide2_0833 Alide2_0833 873231 874349 + Histidinol-phosphate aminotransferase PFAM: Aminotransferase%2C class I/classII~TIGRFAM: Histidinol-phosphate aminotransferase~HAMAP: Histidinol-phosphate aminotransferase~KEGG: dia:Dtpsy_0729 histidinol-phosphate aminotransferase gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0833 Alide2_0834 Alide2_0834 Alide2_0834 874346 874978 + Imidazoleglycerol-phosphate dehydratase KEGG: dia:Dtpsy_0730 imidazoleglycerol-phosphate dehydratase~PFAM: Imidazoleglycerol-phosphate dehydratase gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0834 Alide2_0835 Alide2_0835 Alide2_0835 875029 875697 + imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit KEGG: dia:Dtpsy_0731 imidazole glycerol phosphate synthase subunit HisH~TIGRFAM: Imidazole glycerol phosphate synthase%2C subunit H~PFAM: Glutamine amidotransferase class-I%2C C-terminal gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0835 Alide2_0836 Alide2_0836 Alide2_0836 875750 876493 + phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA~KEGG: ajs:Ajs_0765 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase~PFAM: Histidine biosynthesis gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0836 Alide2_0837 Alide2_0837 Alide2_0837 876500 877696 - Spherulation-specific family 4 PFAM: Spherulation-specific family 4~KEGG: ajs:Ajs_0766 hypothetical protein gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0837 Alide2_0838 Alide2_0838 Alide2_0838 877764 879137 - putative transmembrane protein KEGG: ajs:Ajs_0767 putative transmembrane protein gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0838 Alide2_0839 Alide2_0839 Alide2_0839 879137 880669 - glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: ajs:Ajs_0768 glycosyl transferase%2C group 1 gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0839 Alide2_0840 Alide2_0840 Alide2_0840 880666 881667 - putative transmembrane protein KEGG: ajs:Ajs_0769 putative transmembrane protein gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0840 Alide2_0841 Alide2_0841 Alide2_0841 881660 883054 - putative transmembrane protein KEGG: ajs:Ajs_0770 putative transmembrane protein gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0841 Alide2_0842 Alide2_0842 Alide2_0842 883062 883616 - putative lipoprotein KEGG: ajs:Ajs_0771 putative lipoprotein gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0842 Alide2_0843 Alide2_0843 Alide2_0843 883638 887441 - Tetratricopeptide TPR_2 repeat-containing protein PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-4~KEGG: ajs:Ajs_0772 TPR repeat-containing protein gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0843 Alide2_0844 Alide2_0844 Alide2_0844 887488 890319 - TM1410 hypothetical-related protein PFAM: TM1410 hypothetical-related protein~KEGG: ajs:Ajs_0773 polysaccharide deacetylase gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0844 Alide2_0845 Alide2_0845 Alide2_0845 890492 891508 + UDP-glucose 4-epimerase TIGRFAM: UDP-glucose 4-epimerase~KEGG: ajs:Ajs_0774 UDP-galactose 4-epimerase~PFAM: NAD-dependent epimerase/dehydratase gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0845 Alide2_0846 Alide2_0846 Alide2_0846 891549 892328 + imidazoleglycerol phosphate synthase%2C cyclase subunit TIGRFAM: Histidine biosynthesis%2C HisF~KEGG: dia:Dtpsy_0738 imidazole glycerol phosphate synthase subunit HisF~PFAM: Histidine biosynthesis gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0846 Alide2_0847 Alide2_0847 Alide2_0847 892435 892824 + Phosphoribosyl-AMP cyclohydrolase KEGG: aav:Aave_1048 phosphoribosyl-AMP cyclohydrolase~PFAM: Phosphoribosyl-AMP cyclohydrolase gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0847 Alide2_0848 Alide2_0848 Alide2_0848 892829 893206 + phosphoribosyl-ATP diphosphatase KEGG: dia:Dtpsy_0740 phosphoribosyl-ATP pyrophosphatase~TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase~PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0848 Alide2_0849 Alide2_0849 Alide2_0849 893203 893589 + putative transmembrane protein KEGG: dia:Dtpsy_0741 putative transmembrane protein gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0849 Alide2_0850 Alide2_0850 Alide2_0850 893582 894610 + Patatin PFAM: Patatin/Phospholipase A2-related~KEGG: ajs:Ajs_0779 patatin gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0850 Alide2_0851 Alide2_0851 Alide2_0851 894649 895005 + histidine triad (HIT) protein KEGG: dia:Dtpsy_0743 histidine triad (HIT) protein gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0851 Alide2_0852 Alide2_0852 Alide2_0852 895106 895354 + twin-arginine translocation protein%2C TatA/E family subunit KEGG: ajs:Ajs_0781 twin arginine translocase protein A~TIGRFAM: Twin-arginine translocation protein TatA/E~PFAM: Bacterial sec-independent translocation protein MttA/Hcf106 gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0852 Alide2_0853 Alide2_0853 Alide2_0853 895380 895859 + twin-arginine translocation protein%2C TatB subunit KEGG: dia:Dtpsy_0745 sec-independent translocase~TIGRFAM: Twin-arginine translocation protein TatB~PFAM: Bacterial sec-independent translocation protein MttA/Hcf106 gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0853 Alide2_0854 Alide2_0854 Alide2_0854 895925 896713 + Sec-independent protein translocase%2C TatC subunit KEGG: dia:Dtpsy_0746 sec-independent protein translocase%2C TatC subunit~TIGRFAM: Twin arginine-targeting protein translocase%2C TatC~PFAM: Sec-independent periplasmic protein translocase gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0854 Alide2_0855 Alide2_0855 Alide2_0855 896787 897926 - HtrA2 peptidase PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF~KEGG: ajs:Ajs_0784 peptidase S1 and S6%2C chymotrypsin/Hap~SMART: PDZ/DHR/GLGF gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0855 Alide2_0856 Alide2_0856 Alide2_0856 898017 898769 + NGG1p interacting factor 3 protein%2C NIF3 KEGG: dia:Dtpsy_0749 protein of unknown function DUF34~TIGRFAM: NGG1p interacting factor 3%2C NIF3~PFAM: NGG1p interacting factor 3%2C NIF3 gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0856 Alide2_0857 Alide2_0857 Alide2_0857 898832 899884 + 4-hydroxythreonine-4-phosphate dehydrogenase TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA~KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase~PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0857 Alide2_0858 Alide2_0858 Alide2_0858 899951 900379 - large conductance mechanosensitive channel protein KEGG: dac:Daci_5504 large-conductance mechanosensitive channel~TIGRFAM: Large-conductance mechanosensitive channel~PFAM: Large-conductance mechanosensitive channel gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0858 Alide2_0859 Alide2_0859 Alide2_0859 900505 901104 + ubiquinol-cytochrome c reductase%2C iron-sulfur subunit TIGRFAM: Ubiquinol-cytochrome c reductase%2C iron-sulphur subunit~KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase%2C iron-sulfur subunit~PFAM: Rieske [2Fe-2S] iron-sulphur domain%3B Ubiquitinol-cytochrome C reductase%2C Fe-S subunit%2C TAT signal gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0859 Alide2_0860 Alide2_0860 Alide2_0860 901120 902541 + Cytochrome b/b6 domain protein PFAM: Cytochrome b/b6%2C C-terminal%3B Cytochrome b/b6%2C N-terminal~KEGG: dia:Dtpsy_0753 cytochrome b/b6 domain protein gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0860 Alide2_0861 Alide2_0861 Alide2_0861 902558 903313 + cytochrome c1 KEGG: ajs:Ajs_0791 cytochrome c1~manually curated~PFAM: Cytochrome c1 gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0861 Alide2_0862 Alide2_0862 Alide2_0862 903412 904023 + Glutathione S-transferase domain protein PFAM: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal~KEGG: dia:Dtpsy_0755 glutathione S-transferase domain protein gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0862 Alide2_0863 Alide2_0863 Alide2_0863 904056 904580 + Stringent starvation protein B PFAM: Stringent starvation protein B~KEGG: dia:Dtpsy_0756 stringent starvation protein B gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0863 Alide2_0864 Alide2_0864 Alide2_0864 904763 905062 - hypothetical protein KEGG: dia:Dtpsy_0757 hypothetical protein gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0864 Alide2_0865 Alide2_0865 Alide2_0865 905304 908063 + Protein translocase subunit secA SMART: SecA DEAD-like%2C N-terminal%3B SecA preprotein%2C cross-linking domain~TIGRFAM: SecA protein~KEGG: dia:Dtpsy_0759 preprotein translocase subunit SecA~HAMAP: SecA protein~PFAM: SecA DEAD-like%2C N-terminal%3B SecA preprotein%2C cross-linking domain%3B SecA Wing/Scaffold%3B SEC-C motif gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0865 Alide2_0866 Alide2_0866 Alide2_0866 908139 909368 + Arginine biosynthesis bifunctional protein ArgJ PFAM: Arginine biosynthesis protein ArgJ~TIGRFAM: Arginine biosynthesis protein ArgJ~HAMAP: Arginine biosynthesis protein ArgJ~KEGG: ajs:Ajs_0797 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0866 Alide2_0867 Alide2_0867 Alide2_0867 909423 910295 + protein of unknown function DUF815 KEGG: dia:Dtpsy_0761 protein of unknown function DUF815~PFAM: Domain of unknown function DUF815~SMART: ATPase%2C AAA+ type%2C core gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0867 Alide2_0868 Alide2_0868 Alide2_0868 910292 910717 + NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: dia:Dtpsy_0762 NUDIX hydrolase gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0868 Alide2_0869 Alide2_0869 Alide2_0869 910780 910986 - Uncharacterized zinc-binding family protein PFAM: Uncharacterised protein family%2C zinc-binding~KEGG: dia:Dtpsy_0763 protein of unknown function DUF329 gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0869 Alide2_0870 Alide2_0870 Alide2_0870 910988 911743 - protein of unknown function DUF1342 PFAM: Uncharacterised protein family UPF0289~KEGG: dia:Dtpsy_0764 hypothetical protein gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0870 Alide2_0871 Alide2_0871 Alide2_0871 911826 912440 - dephospho-CoA kinase TIGRFAM: Dephospho-CoA kinase~KEGG: ajs:Ajs_0802 dephospho-CoA kinase~PFAM: Dephospho-CoA kinase gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0871 Alide2_0872 Alide2_0872 Alide2_0872 912461 913339 - Prepilin peptidase KEGG: dia:Dtpsy_0766 prepilin peptidase~PFAM: Peptidase A24A%2C N-terminal%3B Peptidase A24A%2C prepilin type IV gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0872 Alide2_0873 Alide2_0873 Alide2_0873 913339 914556 - Type II secretion system F domain protein PFAM: Type II secretion system F domain~KEGG: ajs:Ajs_0804 type II secretion system protein gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0873 Alide2_0874 Alide2_0874 Alide2_0874 914578 916317 - type IV-A pilus assembly ATPase PilB TIGRFAM: ATPase%2C type IV%2C pilus assembly%2C PilB~PFAM: Type II secretion system protein E%3B General secretory system II%2C protein E%2C N-terminal~KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB~SMART: ATPase%2C AAA+ type%2C core gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0874 Alide2_0875 Alide2_0875 Alide2_0875 916693 917784 + integrase family protein KEGG: ajs:Ajs_0807 phage integrase family protein~manually curated~PFAM: Integrase%2C catalytic core%2C phage gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0875 Alide2_0876 Alide2_0876 Alide2_0876 918106 918597 + helix-turn-helix domain protein KEGG: vap:Vapar_5848 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0876 Alide2_0877 Alide2_0877 Alide2_0877 918594 919250 + Domain of unknown function DUF1814 PFAM: Protein of unknown function DUF1814~KEGG: vap:Vapar_5847 hypothetical protein gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0877 Alide2_0878 Alide2_0878 Alide2_0878 919394 920080 + helix-turn-helix domain protein KEGG: tbd:Tbd_1344 XRE family transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0878 Alide2_0879 Alide2_0879 Alide2_0879 920077 920622 + hypothetical protein KEGG: pol:Bpro_0676 hypothetical protein gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0879 Alide2_0880 Alide2_0880 Alide2_0880 920995 921351 - pseudogene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0880 Alide2_0881 Alide2_0881 Alide2_0881 921406 922209 - IstB domain protein ATP-binding protein KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0881 Alide2_0882 Alide2_0882 Alide2_0882 922199 923725 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: axy:AXYL_06593 integrase family protein 10 gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0882 Alide2_0883 Alide2_0883 Alide2_0883 923884 924774 - hypothetical protein KEGG: dac:Daci_4208 hypothetical protein gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0883 Alide2_0884 Alide2_0884 Alide2_0884 924906 926075 - phage integrase family protein KEGG: ajs:Ajs_3614 phage integrase family protein gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0884 Alide2_0885 Alide2_0885 Alide2_0885 926187 926537 - pseudogene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0885 Alide2_0886 Alide2_0886 Alide2_0886 926605 927519 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0886 Alide2_0887 Alide2_0887 Alide2_0887 927516 927839 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0887 Alide2_0888 Alide2_0888 Alide2_0888 928139 929188 - Trans-hexaprenyltranstransferase KEGG: ajs:Ajs_0840 dimethylallyltranstransferase~PFAM: Polyprenyl synthetase gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0888 Alide2_0889 Alide2_0889 Alide2_0889 929295 929606 + 50S ribosomal protein L21 TIGRFAM: Ribosomal protein L21~HAMAP: Ribosomal protein L21~KEGG: ajs:Ajs_0841 50S ribosomal protein L21~PFAM: Ribosomal protein L21 gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0889 Alide2_0890 Alide2_0890 Alide2_0890 929622 929879 + 50S ribosomal protein L27 TIGRFAM: Ribosomal protein L27~HAMAP: Ribosomal protein L27~KEGG: dia:Dtpsy_0771 50S ribosomal protein L27~PFAM: Ribosomal protein L27 gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0890 Alide2_0891 Alide2_0891 Alide2_0891 930005 931078 + GTPase obg TIGRFAM: GTP-binding protein Obg/CgtA~HAMAP: GTP-binding protein Obg/CgtA~KEGG: ajs:Ajs_0843 GTPase ObgE~PFAM: GTP1/OBG subdomain%3B GTP-binding protein%2C HSR1-related gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0891 Alide2_0892 Alide2_0892 Alide2_0892 931143 932282 + glutamate 5-kinase TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase~PFAM: Aspartate/glutamate/uridylate kinase%3B Pseudouridine synthase/archaeosine transglycosylase~KEGG: dia:Dtpsy_0773 gamma-glutamyl kinase~SMART: Pseudouridine synthase/archaeosine transglycosylase gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0892 Alide2_0893 Alide2_0893 Alide2_0893 932306 932980 - NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: dia:Dtpsy_0774 dinucleoside polyphosphate hydrolase gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0893 Alide2_0894 Alide2_0894 Alide2_0894 933082 934827 + Prolyl-tRNA synthetase TIGRFAM: Prolyl-tRNA synthetase%2C class IIa%2C bacterial~HAMAP: Prolyl-tRNA synthetase%2C class IIa%2C bacterial~KEGG: dia:Dtpsy_0775 prolyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain%3B YbaK/aminoacyl-tRNA synthetase-associated domain%3B Anticodon-binding gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0894 Alide2_0895 Alide2_0895 Alide2_0895 934824 935468 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: ajs:Ajs_0847 lytic transglycosylase%2C catalytic gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0895 Alide2_0896 Alide2_0896 Alide2_0896 935444 936778 - protein of unknown function DUF21 PFAM: Domain of unknown function DUF21%3B Cystathionine beta-synthase%2C core%3B Transporter-associated domain~KEGG: dia:Dtpsy_0777 protein of unknown function DUF21 gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0896 Alide2_0897 Alide2_0897 Alide2_0897 936822 937829 - AAA ATPase central domain protein KEGG: aav:Aave_3667 ATPase central domain-containing protein~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0897 Alide2_0898 Alide2_0898 Alide2_0898 937970 938302 - glutaredoxin-like protein KEGG: dia:Dtpsy_0778 glutaredoxin-like protein~TIGRFAM: Monothiol glutaredoxin-related~PFAM: Glutaredoxin gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0898 Alide2_0899 Alide2_0899 Alide2_0899 938359 939204 - protein-(glutamine-N5) methyltransferase%2C release factor-specific TIGRFAM: Protein-(glutamine-N5) methyltransferase%2C release factor-specific%3B Modification methylase HemK~KEGG: ajs:Ajs_0850 HemK family modification methylase~PFAM: Methyltransferase small gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0899 Alide2_0900 Alide2_0900 Alide2_0900 939248 940363 - Peptide chain release factor 1 SMART: Peptide chain release factor~TIGRFAM: Peptide chain release factor 1~KEGG: ajs:Ajs_0851 peptide chain release factor 1~HAMAP: Peptide chain release factor 1~PFAM: Peptide chain release factor class I/class II%3B Peptide chain release factor gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0900 Alide2_0901 Alide2_0901 Alide2_0901 940432 941745 - glutamyl-tRNA reductase KEGG: dia:Dtpsy_0781 glutamyl-tRNA reductase~TIGRFAM: Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase~PFAM: Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C N-terminal%3B Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C dimerisation domain%3B Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0901 Alide2_0902 Alide2_0902 Alide2_0902 941820 942095 + hypothetical protein KEGG: dia:Dtpsy_0782 hypothetical protein gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0902 Alide2_0903 Alide2_0903 Alide2_0903 942212 943105 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_0783 transcriptional regulator%2C LysR family gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0903 Alide2_0904 Alide2_0904 Alide2_0904 943231 944214 + hypothetical protein KEGG: ajs:Ajs_0855 hypothetical protein gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0904 Alide2_0905 Alide2_0905 Alide2_0905 944214 945116 + N-formylglutamate amidohydrolase PFAM: N-formylglutamate amidohydrolase~KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0905 Alide2_0906 Alide2_0906 Alide2_0906 945160 947592 - MscS Mechanosensitive ion channel PFAM: Mechanosensitive ion channel MscS%3B Protein of unknown function DUF3772~KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0906 Alide2_0907 Alide2_0907 Alide2_0907 947621 948370 - Glycerophosphodiester phosphodiesterase KEGG: dia:Dtpsy_0787 glycerophosphodiester phosphodiesterase~PFAM: Glycerophosphoryl diester phosphodiesterase gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0907 Alide2_0908 Alide2_0908 Alide2_0908 948377 949384 - Glycerol-3-phosphate-transporting ATPase PFAM: ABC transporter-like%3B Transport-associated OB%2C type 2~KEGG: ctt:CtCNB1_0786 sn-glycerol-3-phosphate transport ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0908 Alide2_0909 Alide2_0909 Alide2_0909 949445 950293 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: dia:Dtpsy_0789 binding-protein-dependent transport systems inner membrane component gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0909 Alide2_0910 Alide2_0910 Alide2_0910 950301 951182 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: ctt:CtCNB1_0788 sn-glycerol-3-phosphate transport systempermease protein UgpA gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0910 Alide2_0911 Alide2_0911 Alide2_0911 951253 952566 - extracellular solute-binding protein family 1 PFAM: Bacterial extracellular solute-binding%2C family 1~KEGG: dia:Dtpsy_0791 extracellular solute-binding protein family 1 gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0911 Alide2_0912 Alide2_0912 Alide2_0912 952898 954127 + Phosphoglycerate dehydrogenase KEGG: ajs:Ajs_0863 D-3-phosphoglycerate dehydrogenase~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B Amino acid-binding ACT%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0912 Alide2_0913 Alide2_0913 Alide2_0913 954249 958166 + FAD linked oxidase domain protein PFAM: FAD linked oxidase%2C N-terminal%3B FAD-linked oxidase%2C C-terminal%3B Cysteine-rich domain~KEGG: dia:Dtpsy_0793 FAD linked oxidase domain protein gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0913 Alide2_0914 Alide2_0914 Alide2_0914 958163 958615 + histidine triad (HIT) protein PFAM: Histidine triad (HIT) protein~KEGG: ajs:Ajs_0865 histidine triad (HIT) protein gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0914 Alide2_0915 Alide2_0915 Alide2_0915 958692 959111 + protein of unknown function DUF971 PFAM: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase%2C N-terminal~KEGG: dia:Dtpsy_0795 protein of unknown function DUF971 gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0915 Alide2_0916 Alide2_0916 Alide2_0916 959189 959920 + ubiquinone/menaquinone biosynthesis methyltransferase KEGG: dia:Dtpsy_0796 ubiquinone/menaquinone biosynthesis methyltransferase~TIGRFAM: UbiE/COQ5 methyltransferase~PFAM: UbiE/COQ5 methyltransferase gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0916 Alide2_0917 Alide2_0917 Alide2_0917 959962 960960 + import inner membrane translocase subunit Tim44 KEGG: dia:Dtpsy_0797 import inner membrane translocase subunit Tim44~PFAM: Membrane transporter%2C Tim44-related/Ribosomal protein L45~SMART: Membrane transporter%2C Tim44-related/Ribosomal protein L45 gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0917 Alide2_0918 Alide2_0918 Alide2_0918 961035 961595 + hypothetical protein KEGG: dia:Dtpsy_0798 hypothetical protein gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0918 Alide2_0919 Alide2_0919 Alide2_0919 961592 963157 + 2-polyprenylphenol 6-hydroxylase KEGG: dia:Dtpsy_0799 putative ubiquinone biosynthesis protein UbiB~TIGRFAM: Probable ubiquinone biosynthesis protein UbiB~PFAM: ABC-1 gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0919 Alide2_0920 Alide2_0920 Alide2_0920 963209 964660 + Na+/solute symporter PFAM: Sodium/solute symporter~KEGG: dia:Dtpsy_0800 Na+/solute symporter gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0920 Alide2_0921 Alide2_0921 Alide2_0921 964723 965004 + regulatory protein%2C FmdB family SMART: Regulatory protein%2C FmdB%2C putative~manually curated~TIGRFAM: Regulatory protein%2C FmdB%2C putative~KEGG: dia:Dtpsy_0801 regulatory protein%2C FmdB family~PFAM: Regulatory protein%2C FmdB%2C putative gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0921 Alide2_0922 Alide2_0922 Alide2_0922 965018 965641 + protein of unknown function DUF502 PFAM: Protein of unknown function DUF502~KEGG: dia:Dtpsy_0802 protein of unknown function DUF502 gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0922 Alide2_0923 Alide2_0923 Alide2_0923 965742 967541 + aspartyl-tRNA synthetase TIGRFAM: Aspartyl-tRNA synthetase%2C class IIb%2C bacterial/mitochondrial type~KEGG: dia:Dtpsy_0803 aspartyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (D/K/N)%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type%3B GAD domain gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0923 Alide2_0924 Alide2_0924 Alide2_0924 967603 968049 + NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: dia:Dtpsy_0805 NUDIX hydrolase gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0924 Alide2_0925 Alide2_0925 Alide2_0925 968052 968813 + Endonuclease/exonuclease/phosphatase PFAM: Endonuclease/exonuclease/phosphatase~KEGG: dia:Dtpsy_0806 endonuclease/exonuclease/phosphatase gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0925 Alide2_0926 Alide2_0926 Alide2_0926 968956 970185 + phospholipase D/transphosphatidylase KEGG: dia:Dtpsy_0807 phospholipase D/transphosphatidylase gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0926 Alide2_0927 Alide2_0927 Alide2_0927 970290 971015 + GTP cyclohydrolase I KEGG: dia:Dtpsy_0808 GTP cyclohydrolase I~PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0927 Alide2_0928 Alide2_0928 Alide2_0928 971017 971439 + BLUF domain protein PFAM: BLUF~KEGG: dia:Dtpsy_0809 BLUF domain protein gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0928 Alide2_0929 Alide2_0929 Alide2_0929 971661 972542 + protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: dia:Dtpsy_0810 protein of unknown function DUF6 transmembrane gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0929 Alide2_0930 Alide2_0930 Alide2_0930 972572 974392 + histidine kinase KEGG: dar:Daro_2490 sensor histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0930 Alide2_0931 Alide2_0931 Alide2_0931 974389 975018 + two component transcriptional regulator%2C LuxR family KEGG: dar:Daro_2491 LuxR response regulator receiver~PFAM: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0931 Alide2_0932 Alide2_0932 Alide2_0932 975127 976164 - cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: azo:azo2669 cytochrome c family protein gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0932 Alide2_0933 Alide2_0933 Alide2_0933 976300 977157 + hypothetical protein KEGG: aav:Aave_3628 hypothetical protein gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0933 Alide2_0934 Alide2_0934 Alide2_0934 977309 977920 - hypothetical protein KEGG: dia:Dtpsy_0813 hypothetical protein gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0934 Alide2_0935 Alide2_0935 Alide2_0935 978020 978676 + Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: ajs:Ajs_0885 lysine exporter protein LysE/YggA gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0935 Alide2_0936 Alide2_0936 Alide2_0936 978737 980143 - Amidase PFAM: Amidase~KEGG: dia:Dtpsy_0815 amidase gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0936 Alide2_0937 Alide2_0937 Alide2_0937 980140 981630 - ABC-type transporter%2C periplasmic subunit PFAM: Bacterial extracellular solute-binding protein%2C family 5~KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5 gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0937 Alide2_0938 Alide2_0938 Alide2_0938 981736 982602 - Nickel-transporting ATPase PFAM: ABC transporter-like%3B Oligopeptide/dipeptide ABC transporter%2C C-terminal~KEGG: dia:Dtpsy_0817 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0938 Alide2_0939 Alide2_0939 Alide2_0939 982599 983573 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal~KEGG: dia:Dtpsy_0818 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter-like%3B Oligopeptide/dipeptide ABC transporter%2C C-terminal gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0939 Alide2_0940 Alide2_0940 Alide2_0940 983847 984710 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: dia:Dtpsy_0819 binding-protein-dependent transport systems inner membrane component gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0940 Alide2_0941 Alide2_0941 Alide2_0941 984707 985669 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: dia:Dtpsy_0820 binding-protein-dependent transport systems inner membrane component gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0941 Alide2_0942 Alide2_0942 Alide2_0942 985814 986071 + 4Fe-4S ferredoxin iron-sulfur binding domain protein KEGG: dia:Dtpsy_0821 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0942 Alide2_0943 Alide2_0943 Alide2_0943 986133 986762 - Peptidyl-tRNA hydrolase PFAM: Peptidyl-tRNA hydrolase~TIGRFAM: Peptidyl-tRNA hydrolase~HAMAP: Peptidyl-tRNA hydrolase~KEGG: dia:Dtpsy_0822 peptidyl-tRNA hydrolase gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0943 Alide2_0944 Alide2_0944 Alide2_0944 986872 987498 - ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 KEGG: dia:Dtpsy_0823 50S ribosomal protein L25/general stress protein Ctc~TIGRFAM: Ribosomal protein L25%2C long-form~PFAM: Ribosomal protein L25%2C short-form gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0944 Alide2_0945 Alide2_0945 Alide2_0945 987600 988559 - ribose-phosphate pyrophosphokinase TIGRFAM: Phosphoribosyl pyrophosphokinase~KEGG: dia:Dtpsy_0824 ribose-phosphate pyrophosphokinase~PFAM: Phosphoribosyltransferase gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0945 Alide2_0946 Alide2_0946 Alide2_0946 988779 989645 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase PFAM: GHMP kinase~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~KEGG: ajs:Ajs_0896 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0946 Alide2_0947 Alide2_0947 Alide2_0947 989650 990147 - outer membrane lipoprotein LolB PFAM: Outer membrane lipoprotein LolB~KEGG: dia:Dtpsy_0826 putative lipoprotein gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0947 Alide2_0948 Alide2_0948 Alide2_0948 990144 991925 - Tetratricopeptide TPR_1 repeat-containing protein PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR-4~KEGG: ajs:Ajs_0898 TPR repeat-containing protein gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0948 Alide2_0949 Alide2_0949 Alide2_0949 991955 992770 + formamidopyrimidine-DNA glycosylase SMART: DNA glycosylase/AP lyase%2C catalytic domain~TIGRFAM: DNA glycosylase/AP lyase~KEGG: ajs:Ajs_0899 formamidopyrimidine-DNA glycosylase~PFAM: DNA glycosylase/AP lyase%2C catalytic domain%3B DNA glycosylase/AP lyase%2C H2TH DNA-binding%3B Zinc finger%2C DNA glycosylase/AP lyase/isoleucyl tRNA synthetase gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0949 Alide2_0950 Alide2_0950 Alide2_0950 992840 994825 + hypothetical protein manually curated~KEGG: dia:Dtpsy_0829 hypothetical protein gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0950 Alide2_0951 Alide2_0951 Alide2_0951 994822 995880 + A/G-specific adenine glycosylase TIGRFAM: A/G-specific adenine glycosylase MutY%2C bacterial form~PFAM: HhH-GPD domain%3B Endonuclease III-like%2C iron-sulphur cluster loop motif~KEGG: dia:Dtpsy_0830 A/G-specific adenine glycosylase~SMART: HhH-GPD domain%3B Endonuclease III-like%2C iron-sulphur cluster loop motif gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0951 Alide2_0952 Alide2_0952 Alide2_0952 995994 996857 - UPF0042 nucleotide-binding protein yhbJ HAMAP: ATPase%2C P-loop-containing~KEGG: dia:Dtpsy_0831 hypothetical protein gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0952 Alide2_0953 Alide2_0953 Alide2_0953 996863 998536 - DNA repair protein RecN KEGG: ajs:Ajs_0903 DNA repair protein RecN~TIGRFAM: DNA recombination/repair protein RecN~PFAM: RecF/RecN/SMC gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0953 Alide2_0954 Alide2_0954 Alide2_0954 998539 999435 - inorganic polyphosphate/ATP-NAD kinase HAMAP: Inorganic polyphosphate/ATP-NAD kinase%2C predicted~KEGG: dia:Dtpsy_0833 NAD(+)/NADH kinase family protein~PFAM: Inorganic polyphosphate/ATP-NAD kinase%2C predicted gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0954 Alide2_0955 Alide2_0955 Alide2_0955 999464 1000468 + heat-inducible transcription repressor HrcA TIGRFAM: Winged helix-turn-helix transcription repressor%2C HrcA~HAMAP: Winged helix-turn-helix transcription repressor%2C HrcA~KEGG: dia:Dtpsy_0847 heat-inducible transcription repressor~PFAM: Winged helix-turn-helix transcription repressor%2C HrcA%2C C-terminal gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0955 Alide2_0956 Alide2_0956 Alide2_0956 1000770 1000901 + pseudogene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0956 Alide2_0957 Alide2_0957 Alide2_0957 1000898 1001368 + Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III PFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal~KEGG: gur:Gura_3600 N-6 DNA methylase gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0957 Alide2_0958 Alide2_0958 Alide2_0958 1001365 1002279 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0958 Alide2_0959 Alide2_0959 Alide2_0959 1002276 1002599 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0959 Alide2_0960 Alide2_0960 Alide2_0960 1002847 1004109 - outer membrane efflux protein KEGG: dac:Daci_2707 outer membrane efflux protein gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0960 Alide2_0961 Alide2_0961 Alide2_0961 1004106 1004447 - Protein of unknown function DUF3240 PFAM: Protein of unknown function DUF3240~KEGG: dac:Daci_2708 hypothetical protein gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0961 Alide2_0962 Alide2_0962 Alide2_0962 1004444 1009008 - pseudogene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0962 Alide2_0963 Alide2_0963 Alide2_0963 1006794 1007999 - transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: bvi:Bcep1808_6138 transposase%2C IS4 family protein gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0963 Alide2_0964 Alide2_0964 Alide2_0964 1009019 1010242 - efflux transporter%2C RND family%2C MFP subunit KEGG: dac:Daci_2710 RND family efflux transporter MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0964 Alide2_0965 Alide2_0965 Alide2_0965 1010422 1010979 + cytochrome b561 manually curated~KEGG: dac:Daci_2711 cytochrome b561 gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0965 Alide2_0966 Alide2_0966 Alide2_0966 1011005 1011700 + protein of unknown function DUF125 transmembrane PFAM: Domain of unknown function DUF125%2C transmembrane~KEGG: dac:Daci_2712 hypothetical protein gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0966 Alide2_0967 Alide2_0967 Alide2_0967 1011703 1013100 - integral membrane sensor signal transduction histidine kinase manually curated~PFAM: Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B ATPase-like%2C ATP-binding domain~KEGG: dac:Daci_2713 histidine kinase~SMART: Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B ATPase-like%2C ATP-binding domain gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0967 Alide2_0968 Alide2_0968 Alide2_0968 1013104 1013769 - two component transcriptional regulator%2C winged helix family KEGG: dac:Daci_2714 two component transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0968 Alide2_0969 Alide2_0969 Alide2_0969 1013927 1014085 + hypothetical protein gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0969 Alide2_0970 Alide2_0970 Alide2_0970 1014281 1014526 + pseudogene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0970 Alide2_0971 Alide2_0971 Alide2_0971 1014693 1015760 + Alcohol dehydrogenase GroES domain protein PFAM: Alcohol dehydrogenase GroES-like%3B Alcohol dehydrogenase%2C C-terminal~KEGG: rpa:RPA3655 alcohol dehydrogenase gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0971 Alide2_0972 Alide2_0972 Alide2_0972 1015763 1016845 - Lactonase%2C 7-bladed beta propeller PFAM: Lactonase%2C 7-bladed beta propeller~KEGG: dac:Daci_4552 putative hemagglutinin-related protein gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0972 Alide2_0973 Alide2_0973 Alide2_0973 1016842 1017579 - ABC-type transporter%2C periplasmic subunit family 3 KEGG: dac:Daci_4553 extracellular solute-binding protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0973 Alide2_0974 Alide2_0974 Alide2_0974 1017592 1018533 - transcriptional regulator%2C GntR family KEGG: dac:Daci_4554 GntR family transcriptional regulator~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: GntR%2C C-terminal gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0974 Alide2_0975 Alide2_0975 Alide2_0975 1018530 1021184 - Aconitate hydratase KEGG: dac:Daci_4555 aconitate hydratase~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%3B Aconitase A/isopropylmalate dehydratase small subunit%2C swivel gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0975 Alide2_0976 Alide2_0976 Alide2_0976 1021270 1022241 + hypothetical protein KEGG: vap:Vapar_6186 hypothetical protein gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0976 Alide2_0977 Alide2_0977 Alide2_0977 1022296 1023285 + hypothetical protein KEGG: dac:Daci_4557 hypothetical protein gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0977 Alide2_0978 Alide2_0978 Alide2_0978 1023400 1023756 + CutA1 divalent ion tolerance protein PFAM: Divalent ion tolerance protein%2C CutA1~KEGG: dia:Dtpsy_2844 CutA1 divalent ion tolerance protein gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0978 Alide2_0979 Alide2_0979 Alide2_0979 1023771 1024937 - Mandelate racemase/muconate lactonizing protein KEGG: dac:Daci_3339 mandelate racemase/muconate lactonizing protein~PFAM: Mandelate racemase/muconate lactonizing enzyme%2C C-terminal%3B Mandelate racemase/muconate lactonizing enzyme%2C N-terminal~SMART: Mandelate racemase/muconate lactonizing enzyme%2C C-terminal gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0979 Alide2_0980 Alide2_0980 Alide2_0980 1024963 1025667 - 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: vap:Vapar_5678 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0980 Alide2_0981 Alide2_0981 Alide2_0981 1025657 1026622 - hypothetical protein KEGG: dac:Daci_3341 hypothetical protein gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0981 Alide2_0982 Alide2_0982 Alide2_0982 1026654 1027592 - Dihydrodipicolinate synthase KEGG: dac:Daci_3342 dihydrodipicolinate synthetase~PFAM: Dihydrodipicolinate synthetase gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0982 Alide2_0983 Alide2_0983 Alide2_0983 1027711 1028664 + transcriptional regulator%2C LysR family PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~KEGG: aav:Aave_1392 LysR family transcriptional regulator gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0983 Alide2_0984 Alide2_0984 Alide2_0984 1028678 1029802 - signal recognition particle-docking protein FtsY TIGRFAM: Cell division transporter substrate-binding protein FtsY~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle~KEGG: dia:Dtpsy_2843 signal recognition particle-docking protein FtsY~SMART: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle%3B ATPase%2C AAA+ type%2C core gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0984 Alide2_0985 Alide2_0985 Alide2_0985 1029832 1031262 + processing peptidase KEGG: dia:Dtpsy_2842 peptidase M16 domain protein~PFAM: Peptidase M16%2C C-terminal%3B Peptidase M16%2C N-terminal gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0985 Alide2_0986 Alide2_0986 Alide2_0986 1031276 1032634 + peptidase M16 domain protein KEGG: dia:Dtpsy_2841 peptidase M16 domain protein~manually curated~PFAM: Peptidase M16%2C C-terminal%3B Peptidase M16%2C N-terminal gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0986 Alide2_0987 Alide2_0987 Alide2_0987 1032631 1033221 + methyltransferase TIGRFAM: RNA methyltransferase%2C RsmD~KEGG: dia:Dtpsy_2840 methyltransferase~PFAM: RNA methyltransferase%2C RsmD gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0987 Alide2_0988 Alide2_0988 Alide2_0988 1033349 1033837 + pantetheine-phosphate adenylyltransferase TIGRFAM: Coenzyme A biosynthesis protein%3B Cytidyltransferase-related~KEGG: dia:Dtpsy_2839 phosphopantetheine adenylyltransferase~PFAM: Cytidylyltransferase gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0988 Alide2_0989 Alide2_0989 Alide2_0989 1033993 1034307 - transport-associated protein KEGG: dia:Dtpsy_2837 transport-associated~PFAM: Transport-associated~SMART: Transport-associated and nodulation domain%2C bacteria gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0989 Alide2_0990 Alide2_0990 Alide2_0990 1034446 1034838 - protein of unknown function DUF883 ElaB PFAM: Protein of unknown function DUF883%2C ElaB~KEGG: dia:Dtpsy_2835 hypothetical protein gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0990 Alide2_0991 Alide2_0991 Alide2_0991 1034904 1035068 - protein of unknown function DUF1328 PFAM: Protein of unknown function DUF1328~KEGG: dia:Dtpsy_2834 hypothetical protein gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0991 Alide2_0992 Alide2_0992 Alide2_0992 1035211 1036554 - multi-sensor signal transduction histidine kinase KEGG: ajs:Ajs_3510 multi-sensor signal transduction histidine kinase~PFAM: CHASE3%3B Signal transduction histidine kinase%2C subgroup 3%2C dimerisation and phosphoacceptor domain%3B ATPase-like%2C ATP-binding domain~SMART: ATPase-like%2C ATP-binding domain gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0992 Alide2_0993 Alide2_0993 Alide2_0993 1036664 1037296 + two component transcriptional regulator%2C LuxR family KEGG: dia:Dtpsy_2832 two component transcriptional regulator%2C LuxR family~PFAM: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0993 Alide2_0994 Alide2_0994 Alide2_0994 1037274 1037693 - response regulator receiver KEGG: dia:Dtpsy_2831 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0994 Alide2_0995 Alide2_0995 Alide2_0995 1037799 1038563 - UBA/THIF-type NAD/FAD binding protein PFAM: UBA/THIF-type NAD/FAD binding fold%3B MoeZ/MoeB~KEGG: ajs:Ajs_3507 UBA/ThiF-type NAD/FAD binding protein gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0995 Alide2_0996 Alide2_0996 Alide2_0996 1038631 1040067 - carboxyl-terminal protease TIGRFAM: Peptidase S41A%2C C-terminal peptidase~PFAM: Peptidase S41%3B PDZ/DHR/GLGF~KEGG: ajs:Ajs_3506 C-terminal processing peptidase-3~SMART: Peptidase S41%3B PDZ/DHR/GLGF gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0996 Alide2_0997 Alide2_0997 Alide2_0997 1040154 1040897 - phosphoglycerate mutase 1 family SMART: Histidine phosphatase superfamily%2C clade-1~TIGRFAM: Phosphoglycerate mutase 1~KEGG: ajs:Ajs_3505 phosphoglyceromutase~PFAM: Histidine phosphatase superfamily%2C clade-1 gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0997 Alide2_0998 Alide2_0998 Alide2_0998 1040971 1041378 + Rhodanese-like protein KEGG: dia:Dtpsy_2827 rhodanese domain protein~PFAM: Rhodanese-like~SMART: Rhodanese-like gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0998 Alide2_0999 Alide2_0999 Alide2_0999 1041427 1041690 + glutaredoxin 3 KEGG: dia:Dtpsy_2826 glutaredoxin 3~TIGRFAM: Glutaredoxin%2C GrxC~PFAM: Glutaredoxin gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_0999 Alide2_1000 Alide2_1000 Alide2_1000 1041793 1042248 + protein-export protein SecB KEGG: dia:Dtpsy_2825 preprotein translocase subunit SecB~TIGRFAM: Bacterial protein export chaperone SecB~PFAM: Bacterial protein export chaperone SecB gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1000 Alide2_1001 Alide2_1001 Alide2_1001 1042315 1043307 + Glycerol-3-phosphate dehydrogenase (NAD(P)+) manually curated~HAMAP: Glycerol-3-phosphate dehydrogenase%2C NAD-dependent~KEGG: xtr:100490244 glycerol-3-phosphate dehydrogenase [NAD(P)+]-like~PFAM: Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C C-terminal%3B Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C N-terminal gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1001 Alide2_1002 Alide2_1002 Alide2_1002 1043425 1044159 + hypothetical protein KEGG: pna:Pnap_3576 hypothetical protein gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1002 Alide2_1003 Alide2_1003 Alide2_1003 1044187 1045170 - hypothetical protein KEGG: bpa:BPP0893 hypothetical protein gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1003 Alide2_1004 Alide2_1004 Alide2_1004 1045202 1045939 - protein of unknown function DUF81 PFAM: Protein of unknown function DUF81~KEGG: bpa:BPP0894 hypothetical protein gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1004 Alide2_1005 Alide2_1005 Alide2_1005 1045954 1047480 - Microcystin LR degradation protein MlrC PFAM: Microcystin LR degradation protein MlrC%2C N-terminal%3B Microcystin LR degradation protein MlrC%2C C-terminal~KEGG: bbr:BB0988 hypothetical protein gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1005 Alide2_1006 Alide2_1006 Alide2_1006 1047489 1048481 - hypothetical protein KEGG: bpa:BPP0896 hypothetical protein gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1006 Alide2_1007 Alide2_1007 Alide2_1007 1048598 1049488 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: bbr:BB0990 LysR family transcriptional regulator gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1007 Alide2_1008 Alide2_1008 Alide2_1008 1049608 1050459 - pantoate/beta-alanine ligase KEGG: ajs:Ajs_3500 pantoate--beta-alanine ligase~TIGRFAM: Pantoate-beta-alanine ligase~PFAM: Pantoate-beta-alanine ligase gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1008 Alide2_1009 Alide2_1009 Alide2_1009 1050471 1051355 - 3-methyl-2-oxobutanoate hydroxymethyltransferase TIGRFAM: Ketopantoate hydroxymethyltransferase~KEGG: dia:Dtpsy_2822 3-methyl-2-oxobutanoate hydroxymethyltransferase~PFAM: Ketopantoate hydroxymethyltransferase gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1009 Alide2_1010 Alide2_1010 Alide2_1010 1051467 1051616 - pseudogene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1010 Alide2_1011 Alide2_1011 Alide2_1011 1051674 1052555 + nicotinate-nucleotide pyrophosphorylase TIGRFAM: Nicotinate-nucleotide pyrophosphorylase~KEGG: dia:Dtpsy_2821 nicotinate-nucleotide pyrophosphorylase~PFAM: Quinolinate phosphoribosyl transferase%2C C-terminal domain%3B Quinolinate phosphoribosyl transferase%2C N-terminal gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1011 Alide2_1012 Alide2_1012 Alide2_1012 1052777 1053901 + quinolinate synthetase complex%2C A subunit TIGRFAM: Quinolinate synthetase A~KEGG: dia:Dtpsy_2820 quinolinate synthetase~PFAM: Quinolinate synthetase A gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1012 Alide2_1013 Alide2_1013 Alide2_1013 1053955 1055697 + para-aminobenzoate synthase%2C subunit I TIGRFAM: Para-aminobenzoate synthase%2C component I~KEGG: ajs:Ajs_3496 para-aminobenzoate synthase%2C subunit I~PFAM: Chorismate binding%2C C-terminal%3B Aminotransferase%2C class IV gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1013 Alide2_1014 Alide2_1014 Alide2_1014 1055835 1056197 - 5-carboxymethyl-2-hydroxymuconate isomerase PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase~KEGG: dia:Dtpsy_2818 5-carboxymethyl-2-hydroxymuconate isomerase gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1014 Alide2_1015 Alide2_1015 Alide2_1015 1056245 1057819 - L-aspartate oxidase TIGRFAM: L-aspartate oxidase~KEGG: vei:Veis_1080 L-aspartate oxidase~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal%3B Fumarate reductase/succinate dehydrogenase flavoprotein%2C C-terminal gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1015 Alide2_1016 Alide2_1016 Alide2_1016 1057911 1058780 - transcriptional regulator%2C AraC family KEGG: reh:H16_A1911 AraC family transcriptional regulator~PFAM: HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1016 Alide2_1017 Alide2_1017 Alide2_1017 1058876 1059430 + uncharacterized peroxidase-related enzyme KEGG: axy:AXYL_05773 carboxymuconolactone decarboxylase family protein 5~TIGRFAM: Uncharacterised peroxidase-related%3B Alkylhydroperoxidase AhpD core~PFAM: Carboxymuconolactone decarboxylase gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1017 Alide2_1018 Alide2_1018 Alide2_1018 1059415 1060251 - chromosome segregation and condensation protein ScpA PFAM: Prokaryotic chromosome segregation/condensation protein ScpA~KEGG: ajs:Ajs_3492 condensin subunit ScpA gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1018 Alide2_1019 Alide2_1019 Alide2_1019 1060317 1060532 - Protein of unknown function DUF3460 PFAM: Protein of unknown function DUF3460~KEGG: ajs:Ajs_3491 hypothetical protein gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1019 Alide2_1020 Alide2_1020 Alide2_1020 1060578 1061078 + putative lipoprotein KEGG: dac:Daci_1840 putative lipoprotein gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1020 Alide2_1021 Alide2_1021 Alide2_1021 1061085 1062737 - Acetolactate synthase KEGG: ajs:Ajs_3488 hypothetical protein~PFAM: Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1021 Alide2_1022 Alide2_1022 Alide2_1022 1062806 1063957 - L-lactate dehydrogenase (cytochrome) KEGG: ajs:Ajs_3487 FMN-dependent alpha-hydroxy acid dehydrogenase~PFAM: FMN-dependent dehydrogenase gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1022 Alide2_1023 Alide2_1023 Alide2_1023 1063954 1065564 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal~KEGG: dia:Dtpsy_2809 fumarate reductase/succinate dehydrogenase flavoprotein domain protein gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1023 Alide2_1024 Alide2_1024 Alide2_1024 1065659 1066666 + transcriptional regulator%2C Fis family KEGG: ajs:Ajs_3485 AraC family transcriptional regulator~PFAM: HTH transcriptional regulator%2C AraC%3B Helix-turn-helix%2C Fis-type~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1024 Alide2_1025 Alide2_1025 Alide2_1025 1066752 1067468 - glutamine amidotransferase class-I PFAM: Glutamine amidotransferase class-I%2C C-terminal~KEGG: tmz:Tmz1t_0983 glutamine amidotransferase gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1025 Alide2_1026 Alide2_1026 Alide2_1026 1067465 1068259 - protein of unknown function UPF0001 KEGG: dac:Daci_3709 alanine racemase domain-containing protein~TIGRFAM: pyridoxal phosphate-dependent enzyme%2C YBL036C type~PFAM: Alanine racemase%2C N-terminal gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1026 Alide2_1027 Alide2_1027 Alide2_1027 1068256 1069473 - benzoate transporter KEGG: dac:Daci_3710 benzoate transporter~TIGRFAM: Benzoate membrane transport protein~PFAM: Benzoate membrane transport protein gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1027 Alide2_1028 Alide2_1028 Alide2_1028 1069563 1071035 + transcriptional regulator%2C GntR family with aminotransferase domain KEGG: tmz:Tmz1t_0986 transcriptional regulator%2C GntR family with aminotransferase domain~PFAM: HTH transcriptional regulator%2C GntR%3B Aminotransferase%2C class I/classII~SMART: HTH transcriptional regulator%2C GntR gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1028 Alide2_1029 Alide2_1029 Alide2_1029 1071209 1071436 - hypothetical protein KEGG: dac:Daci_1842 hypothetical protein gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1029 Alide2_1030 Alide2_1030 Alide2_1030 1071453 1073522 - methionyl-tRNA synthetase TIGRFAM: Methionyl-tRNA synthetase%2C class Ia%3B Methionyl-tRNA synthetase%2C class Ia%2C beta subunit%2C C-terminal~KEGG: dia:Dtpsy_2806 methionyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class I (M)%3B tRNA-binding domain gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1030 Alide2_1031 Alide2_1031 Alide2_1031 1073602 1074843 - Patatin PFAM: Patatin/Phospholipase A2-related~KEGG: dia:Dtpsy_2805 patatin gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1031 Alide2_1032 Alide2_1032 Alide2_1032 1074868 1075443 - restriction endonuclease PFAM: Restriction endonuclease%2C type IV-like%2C Mrr~KEGG: dia:Dtpsy_2804 restriction endonuclease gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1032 Alide2_1033 Alide2_1033 Alide2_1033 1075630 1076679 - tRNA 2-selenouridine synthase KEGG: dia:Dtpsy_2803 tRNA 2-selenouridine synthase~TIGRFAM: tRNA 2-selenouridine synthase~SMART: Rhodanese-like gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1033 Alide2_1034 Alide2_1034 Alide2_1034 1076738 1077799 + Selenide%2C water dikinase TIGRFAM: Selenide water dikinase~HAMAP: Selenide%2C water dikinase%2C class I~KEGG: ajs:Ajs_3479 selenophosphate synthase~PFAM: AIR synthase-related protein%3B AIR synthase-related protein%2C C-terminal gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1034 Alide2_1035 Alide2_1035 Alide2_1035 1077796 1078869 + C4-dicarboxylate transporter/malic acid transport protein PFAM: C4-dicarboxylate transporter/malic acid transport protein~KEGG: dia:Dtpsy_2801 C4-dicarboxylate transporter/malic acid transport protein gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1035 Alide2_1036 Alide2_1036 Alide2_1036 1078936 1080027 + ATPase-like%2C ParA/MinD PFAM: ATPase-like%2C ParA/MinD%3B Domain of unknown function DUF59~KEGG: ajs:Ajs_3476 hypothetical protein gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1036 Alide2_1037 Alide2_1037 Alide2_1037 1080213 1080716 + MaoC domain protein dehydratase PFAM: MaoC-like dehydratase~KEGG: bpt:Bpet0844 hypothetical protein gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1037 Alide2_1038 Alide2_1038 Alide2_1038 1080766 1081746 + hypothetical protein KEGG: vap:Vapar_0801 hypothetical protein gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1038 Alide2_1039 Alide2_1039 Alide2_1039 1081754 1083205 + MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: bpt:Bpet0850 hypothetical protein gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1039 Alide2_1040 Alide2_1040 Alide2_1040 1083202 1084374 + Isovaleryl-CoA dehydrogenase KEGG: bpt:Bpet0851 acyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1040 Alide2_1041 Alide2_1041 Alide2_1041 1084371 1085600 + Formyl-CoA transferase KEGG: bpt:Bpet0852 hypothetical protein~PFAM: CoA-transferase family III gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1041 Alide2_1042 Alide2_1042 Alide2_1042 1085597 1086412 + transcriptional regulator%2C GntR family with UTRA sensor domain KEGG: bpt:Bpet0853 GntR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C GntR%3B UbiC transcription regulator-associated~SMART: HTH transcriptional regulator%2C GntR%3B UbiC transcription regulator-associated gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1042 Alide2_1043 Alide2_1043 Alide2_1043 1086409 1087611 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: rfr:Rfer_4176 major facilitator transporter gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1043 Alide2_1044 Alide2_1044 Alide2_1044 1087642 1088448 + HpcH/HpaI aldolase PFAM: Aldehyde-lyase domain~KEGG: bpy:Bphyt_0618 citrate (pro-3S)-lyase gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1044 Alide2_1045 Alide2_1045 Alide2_1045 1088562 1090463 + Respiratory-chain NADH dehydrogenase domain 51 kDa subunit KEGG: dia:Dtpsy_2798 respiratory-chain NADH dehydrogenase domain 51 kDa subunit~PFAM: NADH:ubiquinone oxidoreductase%2C 51kDa subunit%3B NADH:ubiquinone oxidoreductase%2C 24kDa subunit%3B Soluble ligand binding domain%3B NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding~SMART: NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1045 Alide2_1046 Alide2_1046 Alide2_1046 1090460 1093321 + formate dehydrogenase%2C alpha subunit SMART: Molybdopterin oxidoreductase%2C Fe4S4 domain~TIGRFAM: Formate dehydrogenase%2C alpha subunit~KEGG: dia:Dtpsy_2797 formate dehydrogenase%2C alpha subunit~PFAM: Molybdopterin oxidoreductase%3B Molybdopterin oxidoreductase%2C Fe4S4 domain%3B Ferredoxin%3B 4Fe-4S binding domain%3B Molydopterin dinucleotide-binding domain gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1046 Alide2_1047 Alide2_1047 Alide2_1047 1093332 1093895 + hypothetical protein manually curated~KEGG: dia:Dtpsy_2796 hypothetical protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1047 Alide2_1048 Alide2_1048 Alide2_1048 1093888 1094496 + hypothetical protein KEGG: ajs:Ajs_3468 hypothetical protein gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1048 Alide2_1049 Alide2_1049 Alide2_1049 1094456 1096519 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S binding domain~KEGG: ajs:Ajs_3467 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1049 Alide2_1050 Alide2_1050 Alide2_1050 1096516 1097151 + cytoplasmic chaperone TorD family protein KEGG: dia:Dtpsy_2793 cytoplasmic chaperone TorD family protein gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1050 Alide2_1051 Alide2_1051 Alide2_1051 1097287 1097499 + formate dehydrogenase region TAT target TIGRFAM: Formate dehydrogenase%2C TAT signal-containing~KEGG: dia:Dtpsy_2792 formate dehydrogenase region TAT target gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1051 Alide2_1052 Alide2_1052 Alide2_1052 1097521 1100493 + Nitrate reductase PFAM: Molybdopterin oxidoreductase%3B Molybdopterin oxidoreductase%2C Fe4S4 domain%3B Molydopterin dinucleotide-binding domain~KEGG: dia:Dtpsy_2791 molybdopterin oxidoreductase~SMART: Molybdopterin oxidoreductase%2C Fe4S4 domain gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1052 Alide2_1053 Alide2_1053 Alide2_1053 1100521 1101141 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S binding domain~KEGG: dia:Dtpsy_2790 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1053 Alide2_1054 Alide2_1054 Alide2_1054 1101138 1101371 + putative lipoprotein KEGG: dia:Dtpsy_2789 putative lipoprotein gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1054 Alide2_1055 Alide2_1055 Alide2_1055 1101385 1102581 + formate dehydrogenase%2C gamma subunit KEGG: ajs:Ajs_3461 formate dehydrogenase gamma subunit~TIGRFAM: Formate dehydrogenase%2C gamma subunit~PFAM: Cytochrome b/b6%2C N-terminal gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1055 Alide2_1056 Alide2_1056 Alide2_1056 1102578 1102898 + hypothetical protein KEGG: dia:Dtpsy_2787 hypothetical protein gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1056 Alide2_1057 Alide2_1057 Alide2_1057 1102978 1103844 + formate dehydrogenase subunit FdhD PFAM: Formate dehydrogenase%2C subunit FdhD~KEGG: dia:Dtpsy_2786 formate dehydrogenase subunit FdhD gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1057 Alide2_1058 Alide2_1058 Alide2_1058 1103854 1106385 + protein of unknown function DUF214 PFAM: Domain of unknown function DUF214%2C ABC transporter permease~KEGG: dia:Dtpsy_2785 protein of unknown function DUF214 gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1058 Alide2_1059 Alide2_1059 Alide2_1059 1106388 1106615 + hypothetical protein KEGG: dia:Dtpsy_2784 hypothetical protein gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1059 Alide2_1060 Alide2_1060 Alide2_1060 1106669 1108225 + hypothetical protein KEGG: ajs:Ajs_3456 hypothetical protein gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1060 Alide2_1061 Alide2_1061 Alide2_1061 1108269 1108661 + transcriptional regulator%2C TraR/DksA family KEGG: dia:Dtpsy_2782 transcriptional regulator%2C TraR/DksA family gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1061 Alide2_1062 Alide2_1062 Alide2_1062 1108661 1109098 + globin PFAM: Globin%2C truncated bacterial-like~KEGG: ajs:Ajs_3454 globin gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1062 Alide2_1063 Alide2_1063 Alide2_1063 1109148 1109906 - transcriptional regulator%2C GntR family with UTRA sensor domain KEGG: reu:Reut_B4840 GntR family transcriptional regulator~PFAM: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR~SMART: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1063 Alide2_1064 Alide2_1064 Alide2_1064 1110000 1110854 - isocitrate lyase and phosphorylmutase PFAM: Isocitrate lyase/phosphorylmutase~KEGG: reu:Reut_B4841 2%2C3-dimethylmalate lyase gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1064 Alide2_1065 Alide2_1065 Alide2_1065 1110851 1111420 - 3-isopropylmalate dehydratase%2C small subunit KEGG: reu:Reut_B4842 3-isopropylmalate dehydratase%2C small subunit~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit%2C subgroup~PFAM: Aconitase A/isopropylmalate dehydratase small subunit%2C swivel gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1065 Alide2_1066 Alide2_1066 Alide2_1066 1111417 1112697 - homoaconitate hydratase family protein KEGG: xtr:100490803 isopropylmalate/citramalate isomerase large subunit-like~TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase%2C large subunit%2C subgroup~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1066 Alide2_1067 Alide2_1067 Alide2_1067 1112694 1113662 - hypothetical protein KEGG: xtr:100490977 UPF0065 protein in tcbD-tcbE intergenic region-like gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1067 Alide2_1068 Alide2_1068 Alide2_1068 1113760 1114410 - Smr protein/MutS2 KEGG: dia:Dtpsy_2779 Smr protein/MutS2~PFAM: Smr protein/MutS2 C-terminal~SMART: Smr protein/MutS2 C-terminal gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1068 Alide2_1069 Alide2_1069 Alide2_1069 1114407 1115567 - hypothetical protein KEGG: dia:Dtpsy_2778 hypothetical protein gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1069 Alide2_1070 Alide2_1070 Alide2_1070 1115564 1116277 - DNA repair protein RadC KEGG: ajs:Ajs_3450 DNA repair protein RadC~TIGRFAM: Uncharacterised protein family UPF0758~PFAM: Uncharacterised protein family UPF0758 gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1070 Alide2_1071 Alide2_1071 Alide2_1071 1116359 1116835 + peptidylprolyl isomerase FKBP-type PFAM: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~KEGG: dia:Dtpsy_2776 peptidylprolyl isomerase FKBP-type gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1071 Alide2_1072 Alide2_1072 Alide2_1072 1116841 1117824 + 4-hydroxy-3-methylbut-2-enyl diphosphate reductase PFAM: LytB protein~TIGRFAM: LytB protein~HAMAP: LytB protein~KEGG: ajs:Ajs_3448 4-hydroxy-3-methylbut-2-enyl diphosphate reductase gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1072 Alide2_1073 Alide2_1073 Alide2_1073 1118032 1119360 + protein of unknown function DUF21 KEGG: ajs:Ajs_3447 hypothetical protein~PFAM: Domain of unknown function DUF21%3B Cystathionine beta-synthase%2C core%3B Transporter-associated domain~SMART: Cystathionine beta-synthase%2C core gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1073 Alide2_1074 Alide2_1074 Alide2_1074 1119382 1120059 - putative signal transduction protein with CBS domains KEGG: aav:Aave_3769 CBS domain-containing protein~PFAM: Cystathionine beta-synthase%2C core~SMART: Cystathionine beta-synthase%2C core gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1074 Alide2_1075 Alide2_1075 Alide2_1075 1120112 1121428 + Seryl-tRNA synthetase PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain%3B Seryl-tRNA synthetase%2C class IIa%2C N-terminal~TIGRFAM: Seryl-tRNA synthetase%2C class IIa~HAMAP: Seryl-tRNA synthetase%2C class IIa~KEGG: dia:Dtpsy_2772 seryl-tRNA synthetase gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1075 Alide2_1076 Alide2_1076 Alide2_1076 1121486 1122427 + hypothetical protein KEGG: dac:Daci_5376 hypothetical protein gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1076 Alide2_1077 Alide2_1077 Alide2_1077 1122666 1122953 - hypothetical protein KEGG: mca:MCA1626 hypothetical protein gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1077 Alide2_1078 Alide2_1078 Alide2_1078 1122950 1123474 - hypothetical protein gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1078 Alide2_1079 Alide2_1079 Alide2_1079 1123488 1124783 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: pol:Bpro_0966 phage integrase gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1079 Alide2_1080 Alide2_1080 Alide2_1080 1125367 1125864 - protein of unknown function DUF1643 PFAM: Protein of unknown function DUF1643~KEGG: mtt:Ftrac_0456 hypothetical protein gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1080 Alide2_1081 Alide2_1081 Alide2_1081 1125984 1126217 + helix-turn-helix domain protein manually curated~PFAM: Helix-turn-helix type 3~KEGG: pde:Pden_0455 helix-turn-helix domain-containing protein~SMART: Helix-turn-helix type 3 gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1081 Alide2_1082 Alide2_1082 Alide2_1082 1127083 1129488 - hypothetical protein KEGG: ppn:Palpr_2996 hypothetical protein gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1082 Alide2_1083 Alide2_1083 Alide2_1083 1129735 1131000 - AAA ATPase KEGG: pol:Bpro_0961 hypothetical protein~manually curated~SMART: ATPase%2C AAA+ type%2C core gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1083 Alide2_1084 Alide2_1084 Alide2_1084 1131291 1131551 - hypothetical protein gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1084 Alide2_1085 Alide2_1085 Alide2_1085 1132086 1132937 + FRG domain protein KEGG: app:CAP2UW1_1805 FRG domain protein~PFAM: FRG domain~SMART: FRG domain gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1085 Alide2_1086 Alide2_1086 Alide2_1086 1132989 1133204 - hypothetical protein KEGG: rva:Rvan_1233 hypothetical protein gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1086 Alide2_1087 Alide2_1087 Alide2_1087 1133301 1133432 + pseudogene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1087 Alide2_1088 Alide2_1088 Alide2_1088 1133490 1134431 + hypothetical protein KEGG: dac:Daci_5376 hypothetical protein gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1088 Alide2_1089 Alide2_1089 Alide2_1089 1134699 1136636 + hypothetical protein KEGG: rfr:Rfer_0701 hypothetical protein gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1089 Alide2_1090 Alide2_1090 Alide2_1090 1136819 1138213 + exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase%3B Sugar transferase%2C PEP-CTERM system associated~KEGG: rfr:Rfer_0702 undecaprenyl-phosphate galactosephosphotransferase~PFAM: Bacterial sugar transferase gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1090 Alide2_1091 Alide2_1091 Alide2_1091 1138250 1140556 - multi-sensor signal transduction histidine kinase KEGG: dac:Daci_5418 histidine kinase~PFAM: CHASE2%3B ATPase-like%2C ATP-binding domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1091 Alide2_1092 Alide2_1092 Alide2_1092 1140597 1142249 - FecR protein KEGG: dac:Daci_5417 peptidoglycan-binding LysM~PFAM: FecR protein%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1092 Alide2_1093 Alide2_1093 Alide2_1093 1142373 1143104 - two component transcriptional regulator%2C winged helix family KEGG: ctt:CtCNB1_0831 two component transcriptional regulator%2C winged~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1093 Alide2_1094 Alide2_1094 Alide2_1094 1143283 1144587 - tryptophanyl-tRNA synthetase TIGRFAM: Tryptophanyl-tRNA synthetase%2C class Ib~KEGG: dia:Dtpsy_2771 tryptophanyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ib gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1094 Alide2_1095 Alide2_1095 Alide2_1095 1144599 1145267 - peptidase M50 PFAM: Peptidase M50~KEGG: dia:Dtpsy_2770 peptidase M50 gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1095 Alide2_1096 Alide2_1096 Alide2_1096 1145386 1146558 + methyl-accepting chemotaxis sensory transducer KEGG: dac:Daci_5413 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1096 Alide2_1097 Alide2_1097 Alide2_1097 1146642 1147277 - Sua5/YciO/YrdC/YwlC family protein KEGG: dia:Dtpsy_2764 SUA5/YciO/YrdC/YwlC family protein~TIGRFAM: Sua5/YciO/YrdC/YwlC~PFAM: Sua5/YciO/YrdC%2C N-terminal gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1097 Alide2_1098 Alide2_1098 Alide2_1098 1147283 1148251 - PHP domain protein KEGG: dia:Dtpsy_2763 PHP domain protein~PFAM: PHP%2C C-terminal~SMART: Polymerase/histidinol phosphatase%2C N-terminal gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1098 Alide2_1099 Alide2_1099 Alide2_1099 1148336 1150099 + methyl-accepting chemotaxis sensory transducer KEGG: ajs:Ajs_3430 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1099 Alide2_1100 Alide2_1100 Alide2_1100 1150160 1151875 - single-stranded-DNA-specific exonuclease RecJ KEGG: ajs:Ajs_3424 single-stranded-DNA-specific exonuclease RecJ~TIGRFAM: Bacterial RecJ exonuclease~PFAM: Phosphoesterase%2C RecJ-like%3B Phosphoesterase%2C DHHA1 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1100 Alide2_1101 Alide2_1101 Alide2_1101 1151872 1152822 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase~KEGG: dia:Dtpsy_2757 hypothetical protein gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1101 Alide2_1102 Alide2_1102 Alide2_1102 1152919 1154172 + lipoprotein releasing system%2C transmembrane protein%2C LolC/E family manually curated~TIGRFAM: Lipoprotein releasing system%2C transmembrane protein%2C LolC/E family~KEGG: dia:Dtpsy_2755 lipoprotein releasing system%2C transmembrane protein%2C LolC/E family~PFAM: Domain of unknown function DUF214%2C ABC transporter permease gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1102 Alide2_1103 Alide2_1103 Alide2_1103 1154165 1154851 + lipoprotein releasing system%2C ATP-binding protein SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Lipoprotein releasing system%2C ATP-binding protein~KEGG: dia:Dtpsy_2754 lipoprotein releasing system%2C ATP-binding protein~PFAM: ABC transporter-like gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1103 Alide2_1104 Alide2_1104 Alide2_1104 1154980 1155282 - cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: dia:Dtpsy_0985 cytochrome c class I gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1104 Alide2_1105 Alide2_1105 Alide2_1105 1155390 1155632 + hypothetical protein KEGG: dia:Dtpsy_0986 hypothetical protein gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1105 Alide2_1106 Alide2_1106 Alide2_1106 1155657 1157348 - dihydroxy-acid dehydratase TIGRFAM: Dihydroxy-acid dehydratase~KEGG: dia:Dtpsy_0987 dihydroxy-acid dehydratase~PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1106 Alide2_1107 Alide2_1107 Alide2_1107 1157577 1159433 + dihydroxy-acid dehydratase TIGRFAM: Dihydroxy-acid dehydratase~KEGG: dia:Dtpsy_0988 dihydroxy-acid dehydratase~PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1107 Alide2_1108 Alide2_1108 Alide2_1108 1159574 1160002 + phenylacetic acid degradation-related protein KEGG: dia:Dtpsy_0989 thioesterase superfamily protein~TIGRFAM: Phenylacetic acid degradation-related protein~PFAM: Thioesterase superfamily gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1108 Alide2_1109 Alide2_1109 Alide2_1109 1160005 1160472 - bacterioferritin KEGG: dia:Dtpsy_0990 bacterioferritin~TIGRFAM: Bacterioferritin~PFAM: Ferritin/Dps protein gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1109 Alide2_1110 Alide2_1110 Alide2_1110 1160572 1161387 + prolipoprotein diacylglyceryl transferase KEGG: dia:Dtpsy_0991 prolipoprotein diacylglyceryl transferase~TIGRFAM: Prolipoprotein diacylglyceryl transferase~PFAM: Prolipoprotein diacylglyceryl transferase gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1110 Alide2_1111 Alide2_1111 Alide2_1111 1161596 1162264 + transcriptional regulator%2C GntR family KEGG: dia:Dtpsy_0992 transcriptional regulator%2C GntR family~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR%3B GntR%2C C-terminal gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1111 Alide2_1112 Alide2_1112 Alide2_1112 1162261 1163688 + Malonyl-CoA decarboxylase KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase~PFAM: Malonyl-CoA decarboxylase gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1112 Alide2_1113 Alide2_1113 Alide2_1113 1163752 1164774 + hypothetical protein KEGG: dia:Dtpsy_0994 hypothetical protein gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1113 Alide2_1114 Alide2_1114 Alide2_1114 1164784 1165605 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: ajs:Ajs_1079 enoyl-CoA hydratase/isomerase gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1114 Alide2_1115 Alide2_1115 Alide2_1115 1165616 1167169 + o-succinylbenzoate--CoA ligase KEGG: dia:Dtpsy_0996 malonyl-CoA synthase~PFAM: AMP-dependent synthetase/ligase gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1115 Alide2_1116 Alide2_1116 Alide2_1116 1167279 1167722 - UspA domain-containing protein PFAM: UspA~KEGG: dia:Dtpsy_0997 UspA domain protein gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1116 Alide2_1117 Alide2_1117 Alide2_1117 1167885 1170221 + heavy metal translocating P-type ATPase TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: dia:Dtpsy_0998 heavy metal translocating P-type ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase-like hydrolase gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1117 Alide2_1118 Alide2_1118 Alide2_1118 1170224 1170361 + cytochrome oxidase maturation protein%2C cbb3-type KEGG: dia:Dtpsy_0999 cytochrome oxidase maturation protein%2C cbb3-type~TIGRFAM: Cytochrome oxidase maturation protein cbb3-type~PFAM: Cytochrome oxidase maturation protein cbb3-type gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1118 Alide2_1119 Alide2_1119 Alide2_1119 1170428 1171867 + cytochrome c oxidase%2C cbb3-type%2C subunit I TIGRFAM: Cytochrome c oxidase cbb3-type%2C subunit I~KEGG: dia:Dtpsy_1000 cbb3-type cytochrome c oxidase subunit I~PFAM: Cytochrome c oxidase%2C subunit I gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1119 Alide2_1120 Alide2_1120 Alide2_1120 1171887 1172519 + cytochrome c oxidase%2C cbb3-type%2C subunit II KEGG: dia:Dtpsy_1001 cbb3-type cytochrome c oxidase subunit II~TIGRFAM: Cytochrome c oxidase%2C monohaem subunit/FixO~PFAM: Cytochrome c oxidase%2C monohaem subunit/FixO gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1120 Alide2_1121 Alide2_1121 Alide2_1121 1172540 1172677 + Cbb3-type cytochrome oxidase component KEGG: dia:Dtpsy_1002 Cbb3-type cytochrome oxidase component gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1121 Alide2_1122 Alide2_1122 Alide2_1122 1172707 1173621 + cytochrome c oxidase%2C cbb3-type%2C subunit III KEGG: ajs:Ajs_1087 cytochrome c oxidase%2C cbb3-type%2C subunit III~TIGRFAM: Cytochrome c oxidase cbb3-type%2C subunit III~PFAM: Cytochrome c%2C class I gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1122 Alide2_1123 Alide2_1123 Alide2_1123 1173706 1175148 + cytochrome c oxidase accessory protein CcoG TIGRFAM: Cytochrome c oxidase cbb3 type%2C accessory protein FixG~KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1123 Alide2_1124 Alide2_1124 Alide2_1124 1175208 1175486 + FixH family protein PFAM: FixH~KEGG: dia:Dtpsy_1005 hypothetical protein gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1124 Alide2_1125 Alide2_1125 Alide2_1125 1175574 1175861 + hypothetical protein KEGG: dia:Dtpsy_1006 hypothetical protein gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1125 Alide2_1126 Alide2_1126 Alide2_1126 1175896 1176639 - transcriptional regulator%2C Crp/Fnr family KEGG: ajs:Ajs_1091 CRP/FNR family transcriptional regulator~PFAM: Cyclic nucleotide-binding domain%3B HTH transcriptional regulator%2C Crp~SMART: HTH transcriptional regulator%2C Crp%3B Cyclic nucleotide-binding domain gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1126 Alide2_1127 Alide2_1127 Alide2_1127 1176810 1178192 + oxygen-independent coproporphyrinogen III oxidase TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN~PFAM: HemN%2C C-terminal%3B Radical SAM~KEGG: dia:Dtpsy_1008 coproporphyrinogen III oxidase~SMART: Elongator protein 3/MiaB/NifB gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1127 Alide2_1128 Alide2_1128 Alide2_1128 1178196 1178918 + hypothetical protein KEGG: ajs:Ajs_1093 hypothetical protein gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1128 Alide2_1129 Alide2_1129 Alide2_1129 1179079 1180326 + metal dependent phosphohydrolase TIGRFAM: Uncharacterised protein family HDIG~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain~KEGG: aav:Aave_1533 metal dependent phosphohydrolase~SMART: Metal-dependent phosphohydrolase%2C HD domain gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1129 Alide2_1130 Alide2_1130 Alide2_1130 1180323 1182773 + diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS fold~KEGG: dac:Daci_2786 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1130 Alide2_1131 Alide2_1131 Alide2_1131 1183028 1183384 - protein of unknown function DUF710 PFAM: Cell division protein ZapA-like~KEGG: dia:Dtpsy_1010 protein of unknown function DUF710 gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1131 Alide2_1132 Alide2_1132 Alide2_1132 1183381 1183620 - hypothetical protein KEGG: ajs:Ajs_1095 hypothetical protein gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1132 Alide2_1133 Alide2_1133 Alide2_1133 1184048 1185841 + TonB-dependent receptor plug PFAM: TonB-dependent receptor%2C plug%3B TonB-dependent receptor%2C beta-barrel~KEGG: aav:Aave_1537 TonB-dependent receptor gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1133 Alide2_1134 Alide2_1134 Alide2_1134 1186013 1187365 + CobB/CobQ domain protein glutamine amidotransferase PFAM: CobB/CobQ-like glutamine amidotransferase%3B Cobyrinic acid a%2Cc-diamide synthase~KEGG: dia:Dtpsy_1013 CobB/CobQ domain protein glutamine amidotransferase gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1134 Alide2_1135 Alide2_1135 Alide2_1135 1187362 1187946 + Adenosylcobinamide-phosphate guanylyltransferase KEGG: dia:Dtpsy_1014 cobalbumin biosynthesis protein~PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1135 Alide2_1136 Alide2_1136 Alide2_1136 1187943 1188842 + ABC-type transporter%2C periplasmic subunit PFAM: Periplasmic binding protein~KEGG: dia:Dtpsy_1015 periplasmic binding protein gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1136 Alide2_1137 Alide2_1137 Alide2_1137 1188839 1189882 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease protein~KEGG: dia:Dtpsy_1016 transport system permease protein gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1137 Alide2_1138 Alide2_1138 Alide2_1138 1189879 1190655 + ABC transporter related protein manually curated~PFAM: ABC transporter-like~KEGG: dia:Dtpsy_1017 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1138 Alide2_1139 Alide2_1139 Alide2_1139 1190679 1191248 + cob(I)alamin adenosyltransferase TIGRFAM: Adenosylcobalamin biosynthesis%2C ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR~KEGG: ctt:CtCNB1_1848 cob(I)alamin adenosyltransferase~PFAM: Adenosylcobalamin biosynthesis%2C ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1139 Alide2_1140 Alide2_1140 Alide2_1140 1191355 1191867 + methylated-DNA/protein-cysteine methyltransferase KEGG: dia:Dtpsy_1019 methylated-DNA/protein-cysteine methyltransferase~TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding~PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding%3B Methylguanine DNA methyltransferase%2C ribonuclease-like gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1140 Alide2_1141 Alide2_1141 Alide2_1141 1191864 1192559 - Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: ajs:Ajs_2354 methyltransferase type 11 gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1141 Alide2_1142 Alide2_1142 Alide2_1142 1192620 1193690 - NADPH dehydrogenase KEGG: gbm:Gbem_2134 NADPH-dependent enal/enone/nitroreductase~PFAM: NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1142 Alide2_1143 Alide2_1143 Alide2_1143 1193763 1194728 - extra-cytoplasmic solute receptor KEGG: reh:H16_B0202 extra-cytoplasmic solute receptor gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1143 Alide2_1144 Alide2_1144 Alide2_1144 1194959 1196146 + Formyl-CoA transferase KEGG: pde:Pden_3227 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1144 Alide2_1145 Alide2_1145 Alide2_1145 1196158 1196910 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: ara:Arad_7507 3-oxoacyl-(acyl-carrier-protein) reductase protein~PFAM: Short-chain dehydrogenase/reductase SDR gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1145 Alide2_1146 Alide2_1146 Alide2_1146 1196941 1197702 - 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: axy:AXYL_06414 3-oxoacyl-[acyl-carrier-protein] reductase 10~PFAM: Short-chain dehydrogenase/reductase SDR gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1146 Alide2_1147 Alide2_1147 Alide2_1147 1197736 1198980 - Formyl-CoA transferase KEGG: pag:PLES_04421 putative acyl-CoA transferase~PFAM: CoA-transferase family III gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1147 Alide2_1148 Alide2_1148 Alide2_1148 1199012 1199821 - 3-hydroxybutyrate dehydrogenase KEGG: azl:AZL_d00150 3-hydroxybutyrate dehydrogenase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1148 Alide2_1149 Alide2_1149 Alide2_1149 1199827 1200822 - hypothetical protein KEGG: reu:Reut_B3884 hypothetical protein gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1149 Alide2_1150 Alide2_1150 Alide2_1150 1200924 1201493 - gamma-BHC dehydrochlorinase KEGG: vap:Vapar_5494 gamma-BHC dehydrochlorinase gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1150 Alide2_1151 Alide2_1151 Alide2_1151 1201566 1202375 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: swi:Swit_0321 1%2C4-dihydroxy-2-naphthoate synthase gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1151 Alide2_1152 Alide2_1152 Alide2_1152 1202384 1203550 + acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA oxidase/dehydrogenase%2C type 1~KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1152 Alide2_1153 Alide2_1153 Alide2_1153 1203559 1204704 + acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal~KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1153 Alide2_1154 Alide2_1154 Alide2_1154 1204742 1205599 + transcriptional regulator%2C IclR family KEGG: gct:GC56T3_1469 transcriptional regulator%2C IclR family~PFAM: Transcription regulator IclR%2C C-terminal%3B Transcription regulator IclR%2C N-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1154 Alide2_1155 Alide2_1155 Alide2_1155 1205694 1206005 - pseudogene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1155 Alide2_1156 Alide2_1156 Alide2_1156 1206017 1206412 - pseudogene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1156 Alide2_1157 Alide2_1157 Alide2_1157 1206671 1208779 - 3-hydroxybutyryl-CoA epimerase KEGG: rme:Rmet_5110 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase~PFAM: 3-hydroxyacyl-CoA dehydrogenase%2C NAD binding%3B 3-hydroxyacyl-CoA dehydrogenase%2C C-terminal%3B Crotonase%2C core gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1157 Alide2_1158 Alide2_1158 Alide2_1158 1208869 1209642 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: swi:Swit_0344 enoyl-CoA hydratase gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1158 Alide2_1159 Alide2_1159 Alide2_1159 1209695 1210852 - thiolase%2C C-terminal domain-containing protein 10 KEGG: axy:AXYL_06648 thiolase%2C C-terminal domain-containing protein 10 gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1159 Alide2_1160 Alide2_1160 Alide2_1160 1210849 1211253 - protein of unknown function DUF35 PFAM: Domain of unknown function DUF35%2C OB-fold%2C C-terminal~KEGG: rpc:RPC_1073 hypothetical protein gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1160 Alide2_1161 Alide2_1161 Alide2_1161 1211250 1213403 - CoA-binding domain protein KEGG: reu:Reut_B4556 CoA-binding~PFAM: CoA-binding~SMART: CoA-binding gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1161 Alide2_1162 Alide2_1162 Alide2_1162 1213574 1214740 + Butyryl-CoA dehydrogenase KEGG: fal:FRAAL3384 putative acyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1162 Alide2_1163 Alide2_1163 Alide2_1163 1214757 1215533 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: bxe:Bxe_C0267 short chain enoyl-CoA hydratase gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1163 Alide2_1164 Alide2_1164 Alide2_1164 1215536 1216666 + hypothetical protein KEGG: vei:Veis_4266 hypothetical protein gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1164 Alide2_1165 Alide2_1165 Alide2_1165 1216668 1217069 + protein of unknown function DUF35 PFAM: Domain of unknown function DUF35%2C OB-fold%2C C-terminal%3B Domain of unknown function DUF35%2C rubredoxin-like zinc ribbon domain%2C N-terminal~KEGG: bbr:BB4332 hypothetical protein gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1165 Alide2_1166 Alide2_1166 Alide2_1166 1217084 1218268 + acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: vap:Vapar_0843 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C C-terminal%3B Thiolase%2C N-terminal gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1166 Alide2_1167 Alide2_1167 Alide2_1167 1218285 1219262 + hypothetical protein KEGG: vap:Vapar_1676 hypothetical protein gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1167 Alide2_1168 Alide2_1168 Alide2_1168 1219309 1220058 + Electron transfer flavoprotein alpha/beta-subunit KEGG: dia:Dtpsy_2299 electron transfer flavoprotein alpha/beta-subunit~PFAM: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1168 Alide2_1169 Alide2_1169 Alide2_1169 1220073 1221005 + Electron transfer flavoprotein alpha subunit KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit~PFAM: Electron transfer flavoprotein%2C alpha subunit%2C C-terminal%3B Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1169 Alide2_1170 Alide2_1170 Alide2_1170 1221313 1222428 - acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal~KEGG: reh:H16_B0372 pimeloyl-CoA dehydrogenase (small subunit) gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1170 Alide2_1171 Alide2_1171 Alide2_1171 1222437 1223585 - Isovaleryl-CoA dehydrogenase KEGG: rme:Rmet_5530 acyl-CoA dehydrogenase~PFAM: Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA oxidase/dehydrogenase%2C type 1 gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1171 Alide2_1172 Alide2_1172 Alide2_1172 1223800 1224756 + hypothetical protein KEGG: vap:Vapar_5507 hypothetical protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1172 Alide2_1173 Alide2_1173 Alide2_1173 1225513 1225884 - protein of unknown function DUF498 PFAM: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3~KEGG: dia:Dtpsy_2561 protein of unknown function DUF498 gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1173 Alide2_1174 Alide2_1174 Alide2_1174 1226003 1227235 + Aspartate transaminase KEGG: dia:Dtpsy_2560 aminotransferase AlaT~PFAM: Aminotransferase%2C class I/classII gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1174 Alide2_1175 Alide2_1175 Alide2_1175 1227307 1228641 + Homoserine dehydrogenase KEGG: ajs:Ajs_3206 homoserine dehydrogenase~PFAM: Homoserine dehydrogenase%2C catalytic%3B Aspartate/homoserine dehydrogenase%2C NAD-binding%3B Amino acid-binding ACT gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1175 Alide2_1176 Alide2_1176 Alide2_1176 1228685 1228948 + prevent-host-death family protein KEGG: bts:Btus_3191 prevent-host-death family protein~TIGRFAM: Prevent-host-death protein~PFAM: Prevent-host-death protein gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1176 Alide2_1177 Alide2_1177 Alide2_1177 1228954 1229382 + PilT protein domain protein PFAM: PilT protein%2C N-terminal~KEGG: geo:Geob_1146 PilT protein domain protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1177 Alide2_1178 Alide2_1178 Alide2_1178 1229393 1230823 + threonine synthase TIGRFAM: Threonine synthase~KEGG: dia:Dtpsy_2558 threonine synthase~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1178 Alide2_1179 Alide2_1179 Alide2_1179 1230897 1231448 + molybdopterin-guanine dinucleotide biosynthesis protein B TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB)%2C conserved domain~KEGG: dia:Dtpsy_2557 molybdopterin-guanine dinucleotide biosynthesis protein B gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1179 Alide2_1180 Alide2_1180 Alide2_1180 1231445 1232692 + molybdenum cofactor synthesis domain protein TIGRFAM: Molybdenum cofactor synthesis~PFAM: MoeA%2C N-terminal and linker domain%3B MoeA%2C C-terminal%2C domain IV%3B Molybdopterin binding~KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain-containing protein~SMART: Molybdopterin binding gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1180 Alide2_1181 Alide2_1181 Alide2_1181 1232689 1232949 + molybdopterin converting factor%2C subunit 1 KEGG: dia:Dtpsy_2555 molybdopterin converting factor%2C subunit 1~TIGRFAM: Molybdopterin converting factor%2C subunit 1~PFAM: ThiamineS gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1181 Alide2_1182 Alide2_1182 Alide2_1182 1232936 1233838 - dihydrodipicolinate synthase TIGRFAM: Dihydrodipicolinate synthase subfamily~KEGG: dac:Daci_5213 dihydrodipicolinate synthase~PFAM: Dihydrodipicolinate synthetase gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1182 Alide2_1183 Alide2_1183 Alide2_1183 1234103 1234423 - hypothetical protein KEGG: dia:Dtpsy_2554 hypothetical protein gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1183 Alide2_1184 Alide2_1184 Alide2_1184 1234497 1234640 - Protein of unknown function DUF3149 PFAM: Protein of unknown function DUF3149~KEGG: dia:Dtpsy_2553 hypothetical protein gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1184 Alide2_1185 Alide2_1185 Alide2_1185 1234753 1235007 - hypothetical protein KEGG: dia:Dtpsy_2552 hypothetical protein gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1185 Alide2_1186 Alide2_1186 Alide2_1186 1235064 1235540 + molybdopterin biosynthesis MoaE protein PFAM: Molybdopterin biosynthesis MoaE~KEGG: ajs:Ajs_3199 molybdopterin synthase subunit MoaE gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1186 Alide2_1187 Alide2_1187 Alide2_1187 1235608 1238211 + ATP-dependent chaperone ClpB TIGRFAM: Chaperonin ClpB~PFAM: ATPase%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp%2C N-terminal%3B Clp ATPase%2C C-terminal~KEGG: dia:Dtpsy_2550 ATP-dependent chaperone ClpB~SMART: ATPase%2C AAA+ type%2C core gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1187 Alide2_1188 Alide2_1188 Alide2_1188 1238227 1238589 + hypothetical protein KEGG: dia:Dtpsy_2549 hypothetical protein gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1188 Alide2_1189 Alide2_1189 Alide2_1189 1238709 1240169 + Coniferyl-aldehyde dehydrogenase KEGG: dia:Dtpsy_2547 aldehyde dehydrogenase~PFAM: Aldehyde dehydrogenase domain gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1189 Alide2_1190 Alide2_1190 Alide2_1190 1240246 1240767 + GCN5-related N-acetyltransferase KEGG: dia:Dtpsy_2546 GCN5-related N-acetyltransferase~manually curated~PFAM: GCN5-related N-acetyltransferase (GNAT) domain gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1190 Alide2_1191 Alide2_1191 Alide2_1191 1240793 1241932 + methyltransferase small PFAM: Methyltransferase small~KEGG: aav:Aave_1253 methyltransferase small gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1191 Alide2_1192 Alide2_1192 Alide2_1192 1241988 1243007 + dihydrouridine synthase DuS PFAM: tRNA-dihydrouridine synthase~KEGG: dia:Dtpsy_2544 dihydrouridine synthase DuS gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1192 Alide2_1193 Alide2_1193 Alide2_1193 1242967 1244577 - phospholipase D/Transphosphatidylase KEGG: dia:Dtpsy_2543 phospholipase D/transphosphatidylase~PFAM: Phospholipase D/Transphosphatidylase~SMART: Phospholipase D/Transphosphatidylase gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1193 Alide2_1194 Alide2_1194 Alide2_1194 1244601 1245713 - riboflavin biosynthesis protein RibD TIGRFAM: Riboflavin biosynthesis protein RibD%3B Riboflavin-specific deaminase%2C C-terminal~KEGG: dia:Dtpsy_2542 riboflavin biosynthesis protein RibD~PFAM: Bacterial bifunctional deaminase-reductase%2C C-terminal%3B CMP/dCMP deaminase%2C zinc-binding gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1194 Alide2_1195 Alide2_1195 Alide2_1195 1245751 1246185 - fimbrial protein pilin KEGG: dia:Dtpsy_2540 fimbrial protein pilin gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1195 Alide2_1196 Alide2_1196 Alide2_1196 1246196 1249933 - Neisseria PilC domain protein PFAM: PilC domain~KEGG: dac:Daci_5197 FG-GAP repeat-containing protein gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1196 Alide2_1197 Alide2_1197 Alide2_1197 1250025 1250774 - hypothetical protein KEGG: dac:Daci_5196 hypothetical protein gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1197 Alide2_1198 Alide2_1198 Alide2_1198 1250786 1251661 - hypothetical protein KEGG: dac:Daci_5195 hypothetical protein gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1198 Alide2_1199 Alide2_1199 Alide2_1199 1251664 1252305 - type IV pilus modification protein PilV TIGRFAM: Pilus modification type IV%2C PilV%3B Prepilin-type cleavage/methylation%2C N-terminal~KEGG: dac:Daci_5194 type IV pilus modification protein PilV gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1199 Alide2_1200 Alide2_1200 Alide2_1200 1252312 1252818 - General secretion pathway%2C GspH PFAM: General secretion pathway%2C GspH~KEGG: ajs:Ajs_3182 putative type-4 fimbrial pilin related signal peptide protein gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1200 Alide2_1201 Alide2_1201 Alide2_1201 1253027 1254001 + cobalamin biosynthesis protein CobD KEGG: ajs:Ajs_3180 adenosylcobinamide-phosphate synthase~TIGRFAM: Cobalamin biosynthesis CobD/CbiB~PFAM: Cobalamin biosynthesis CobD/CbiB gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1201 Alide2_1202 Alide2_1202 Alide2_1202 1253994 1254980 + aminotransferase class I and II KEGG: dia:Dtpsy_2532 aminotransferase class I and II gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1202 Alide2_1203 Alide2_1203 Alide2_1203 1254977 1256449 + Cobyric acid synthase TIGRFAM: Cobyric acid synthase CobQ~HAMAP: Cobyric acid synthase CobQ~KEGG: ajs:Ajs_3178 adenosylcobyric acid synthase (glutamine-hydrolysing)~PFAM: CobB/CobQ-like glutamine amidotransferase%3B Cobyrinic acid a%2Cc-diamide synthase gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1203 Alide2_1204 Alide2_1204 Alide2_1204 1256508 1257566 + nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase%2C prokaryotic~KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase~PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1204 Alide2_1205 Alide2_1205 Alide2_1205 1257656 1258159 + Appr-1-p processing domain protein PFAM: Appr-1-p processing~KEGG: pag:PLES_35831 hypothetical protein gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1205 Alide2_1206 Alide2_1206 Alide2_1206 1258177 1258815 - endonuclease III SMART: HhH-GPD domain%3B Endonuclease III-like%2C iron-sulphur cluster loop motif%3B Helix-hairpin-helix DNA-binding motif%2C class 1~TIGRFAM: Endonuclease III/Nth~KEGG: ajs:Ajs_3170 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase~PFAM: HhH-GPD domain%3B Helix-hairpin-helix motif%3B Endonuclease III-like%2C iron-sulphur cluster loop motif gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1206 Alide2_1207 Alide2_1207 Alide2_1207 1258812 1259765 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_2826 LysR family transcriptional regulator gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1207 Alide2_1208 Alide2_1208 Alide2_1208 1259876 1261339 + Amidase PFAM: Amidase~KEGG: dac:Daci_2827 amidase gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1208 Alide2_1209 Alide2_1209 Alide2_1209 1261375 1262361 + hypothetical protein KEGG: dac:Daci_2828 hypothetical protein gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1209 Alide2_1210 Alide2_1210 Alide2_1210 1262358 1262828 - transcription activator effector binding protein KEGG: dac:Daci_3099 AraC family transcriptional regulator~PFAM: Bacterial transcription activator%2C effector binding~SMART: Bacterial transcription activator%2C effector binding gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1210 Alide2_1211 Alide2_1211 Alide2_1211 1262981 1264174 + putative transcriptional regulator%2C GntR family KEGG: aav:Aave_1563 GntR family transcriptional regulator~PFAM: Aminotransferase%2C class I/classII gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1211 Alide2_1212 Alide2_1212 Alide2_1212 1264176 1264376 + SlyX family protein PFAM: SlyX~KEGG: dia:Dtpsy_2515 SlyX family protein gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1212 Alide2_1213 Alide2_1213 Alide2_1213 1264454 1265455 + NADP-dependent oxidoreductase domain protein PFAM: NADP-dependent oxidoreductase domain~KEGG: ajs:Ajs_3167 aldo/keto reductase gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1213 Alide2_1214 Alide2_1214 Alide2_1214 1265458 1265898 + copper resistance D domain protein PFAM: Copper resistance D~KEGG: ajs:Ajs_3166 hypothetical protein gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1214 Alide2_1215 Alide2_1215 Alide2_1215 1265898 1266122 + hypothetical protein KEGG: dia:Dtpsy_2512 hypothetical protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1215 Alide2_1216 Alide2_1216 Alide2_1216 1266119 1266490 - globin-like protein KEGG: aav:Aave_1570 globin-like protein gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1216 Alide2_1217 Alide2_1217 Alide2_1217 1266493 1267224 - iron-sulfur cluster repair di-iron protein KEGG: dia:Dtpsy_2511 hemerythrin HHE cation binding domain protein~TIGRFAM: Iron-sulfur cluster repair di-iron protein~PFAM: Domain of unknown function DUF542%2C ScdA N-terminal%3B Haemerythrin/HHE cation-binding motif gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1217 Alide2_1218 Alide2_1218 Alide2_1218 1267310 1267801 + transcriptional regulator%2C BadM/Rrf2 family KEGG: dia:Dtpsy_2510 transcriptional regulator%2C BadM/Rrf2 family~TIGRFAM: Transcription regulator Rrf2~PFAM: Transcription regulator Rrf2 gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1218 Alide2_1219 Alide2_1219 Alide2_1219 1268102 1270024 + putative serine protein kinase%2C PrkA KEGG: ctt:CtCNB1_1949 putative serine protein kinase%2C PrkA~PFAM: PrkA AAA%3B PrkA serine kinase~SMART: PrkA AAA gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1219 Alide2_1220 Alide2_1220 Alide2_1220 1270069 1271337 + UPF0229 protein yeaH KEGG: dac:Daci_2328 hypothetical protein~HAMAP: Uncharacterised protein family UPF0229~PFAM: Uncharacterised protein family UPF0229 gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1220 Alide2_1221 Alide2_1221 Alide2_1221 1271334 1272965 + SpoVR family protein PFAM: Sporulation stage V%2C protein R~KEGG: dac:Daci_2329 SpoVR family protein gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1221 Alide2_1222 Alide2_1222 Alide2_1222 1273092 1273877 - lipoprotein%2C YaeC family KEGG: dia:Dtpsy_2507 lipoprotein%2C YaeC family~TIGRFAM: Lipoprotein YaeC~PFAM: NLPA lipoprotein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1222 Alide2_1223 Alide2_1223 Alide2_1223 1274014 1275078 - integral membrane sensor signal transduction histidine kinase KEGG: ajs:Ajs_3313 histidine kinase internal region~PFAM: Signal transduction histidine kinase%2C internal region~SMART: ATPase-like%2C ATP-binding domain gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1223 Alide2_1224 Alide2_1224 Alide2_1224 1275129 1276589 + argininosuccinate lyase TIGRFAM: Argininosuccinate lyase~KEGG: dia:Dtpsy_2664 argininosuccinate lyase~PFAM: Lyase 1%2C N-terminal gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1224 Alide2_1225 Alide2_1225 Alide2_1225 1276607 1277581 + hypothetical protein KEGG: ajs:Ajs_3311 hypothetical protein gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1225 Alide2_1226 Alide2_1226 Alide2_1226 1277713 1283649 + alpha-2-macroglobulin domain protein PFAM: Alpha-2-macroglobulin%2C N-terminal%3B Alpha-2-macroglobulin%2C N-terminal 2%3B Alpha-2-macroglobulin~KEGG: dia:Dtpsy_2661 alpha-2-macroglobulin domain protein gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1226 Alide2_1227 Alide2_1227 Alide2_1227 1283684 1284766 + metallophosphoesterase PFAM: Metallo-dependent phosphatase~KEGG: dac:Daci_4972 metallophosphoesterase gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1227 Alide2_1228 Alide2_1228 Alide2_1228 1284876 1285757 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: pol:Bpro_2067 LysR family transcriptional regulator gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1228 Alide2_1229 Alide2_1229 Alide2_1229 1285890 1286882 + hypothetical protein KEGG: vap:Vapar_4821 hypothetical protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1229 Alide2_1230 Alide2_1230 Alide2_1230 1286890 1287885 + Asparaginase PFAM: Asparaginase/glutaminase~KEGG: axy:AXYL_04759 L-asparaginase 1~SMART: Asparaginase/glutaminase gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1230 Alide2_1231 Alide2_1231 Alide2_1231 1287925 1289082 + Butyryl-CoA dehydrogenase KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1231 Alide2_1232 Alide2_1232 Alide2_1232 1289082 1291181 + CoA-binding domain protein KEGG: dac:Daci_1885 CoA-binding domain-containing protein~PFAM: CoA-binding~SMART: CoA-binding gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1232 Alide2_1233 Alide2_1233 Alide2_1233 1291178 1292827 + Isovaleryl-CoA dehydrogenase KEGG: gpb:HDN1F_16010 acyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1233 Alide2_1234 Alide2_1234 Alide2_1234 1292961 1294208 + putative dehydratase/racemase KEGG: bbr:BB0464 putative dehydratase/racemase gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1234 Alide2_1235 Alide2_1235 Alide2_1235 1294533 1295414 + hypothetical protein KEGG: dia:Dtpsy_2653 hypothetical protein gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1235 Alide2_1236 Alide2_1236 Alide2_1236 1295414 1297579 + penicillin-binding protein 1C TIGRFAM: Penicillin-binding protein 1C~KEGG: ajs:Ajs_3299 penicillin-binding protein 1C~PFAM: Glycosyl transferase%2C family 51%3B Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding%2C C-terminal gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1236 Alide2_1237 Alide2_1237 Alide2_1237 1297644 1298165 + hypothetical protein KEGG: dac:Daci_3482 hypothetical protein gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1237 Alide2_1238 Alide2_1238 Alide2_1238 1298186 1299418 + diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted%3B HAMP linker domain~KEGG: dac:Daci_3483 diguanylate cyclase~SMART: Diguanylate cyclase%2C predicted%3B HAMP linker domain gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1238 Alide2_1239 Alide2_1239 Alide2_1239 1299415 1299930 + OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: dac:Daci_3484 OmpA/MotB domain-containing protein gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1239 Alide2_1240 Alide2_1240 Alide2_1240 1300023 1301195 + L-lactate dehydrogenase (cytochrome) KEGG: ajs:Ajs_3298 (S)-2-hydroxy-acid oxidase~PFAM: FMN-dependent dehydrogenase gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1240 Alide2_1241 Alide2_1241 Alide2_1241 1301368 1302300 + protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: dia:Dtpsy_2650 hypothetical protein gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1241 Alide2_1242 Alide2_1242 Alide2_1242 1302313 1304151 - Isovaleryl-CoA dehydrogenase KEGG: bbr:BB0981 acyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1242 Alide2_1243 Alide2_1243 Alide2_1243 1304188 1305414 - Formyl-CoA transferase KEGG: bbr:BB0982 hypothetical protein~PFAM: CoA-transferase family III gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1243 Alide2_1244 Alide2_1244 Alide2_1244 1305445 1306413 - hypothetical protein KEGG: bbr:BB0983 hypothetical protein gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1244 Alide2_1245 Alide2_1245 Alide2_1245 1306552 1307445 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: bbr:BB0984 LysR family transcriptional regulator gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1245 Alide2_1246 Alide2_1246 Alide2_1246 1307521 1308714 + DNA-directed DNA polymerase KEGG: aav:Aave_1964 DNA-directed DNA polymerase~PFAM: DNA-repair protein%2C UmuC-like gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1246 Alide2_1247 Alide2_1247 Alide2_1247 1308876 1310438 + methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TIGRFAM: PAS~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B PAS fold-3~KEGG: dia:Dtpsy_2648 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B PAS%3B PAC motif gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1247 Alide2_1248 Alide2_1248 Alide2_1248 1310468 1311313 - 7-cyano-7-deazaguanine reductase TIGRFAM: Nitrile oxidoreductase%2C NADPH-dependent%2C YqcD~KEGG: ajs:Ajs_3294 7-cyano-7-deazaguanine reductase~PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1248 Alide2_1249 Alide2_1249 Alide2_1249 1311369 1312223 - Procollagen-proline dioxygenase PFAM: Oxoglutarate/iron-dependent oxygenase~KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase~SMART: Prolyl 4-hydroxylase%2C alpha subunit gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1249 Alide2_1250 Alide2_1250 Alide2_1250 1312220 1312993 - protein of unknown function DUF328 PFAM: Uncharacterised protein family UPF0246~KEGG: dia:Dtpsy_2644 hypothetical protein gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1250 Alide2_1251 Alide2_1251 Alide2_1251 1313152 1316238 - ribonuclease%2C Rne/Rng family TIGRFAM: Ribonuclease E/G~PFAM: RNA-binding protein AU-1/Ribonuclease E/G%3B Ribosomal protein S1%2C RNA-binding domain~KEGG: ajs:Ajs_3290 ribonuclease E~SMART: RNA-binding domain%2C S1 gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1251 Alide2_1252 Alide2_1252 Alide2_1252 1316828 1317847 + pseudouridine synthase%2C RluA family TIGRFAM: Pseudouridine synthase%2C RluC/RluD~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4%3B Zinc finger%2C FLYWCH-type~KEGG: dia:Dtpsy_2642 pseudouridine synthase%2C RluA family~SMART: RNA-binding S4 gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1252 Alide2_1253 Alide2_1253 Alide2_1253 1317840 1318511 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: dia:Dtpsy_2641 HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~PFAM: Haloacid dehalogenase-like hydrolase gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1253 Alide2_1254 Alide2_1254 Alide2_1254 1318514 1318885 + Rieske (2Fe-2S) iron-sulfur domain protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: dia:Dtpsy_2640 Rieske (2Fe-2S) domain protein gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1254 Alide2_1255 Alide2_1255 Alide2_1255 1318890 1319930 + peptidase S49 PFAM: Peptidase S49~KEGG: dia:Dtpsy_2639 peptidase S49 gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1255 Alide2_1256 Alide2_1256 Alide2_1256 1319935 1320720 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase PFAM: Tetrapyrrole methylase~KEGG: dia:Dtpsy_2638 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1256 Alide2_1257 Alide2_1257 Alide2_1257 1320717 1321316 - maf protein KEGG: dia:Dtpsy_2637 maf protein~TIGRFAM: Maf-like protein~PFAM: Maf-like protein gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1257 Alide2_1258 Alide2_1258 Alide2_1258 1321343 1321894 + protein of unknown function DUF177 PFAM: Protein of unknown function DUF177~KEGG: dia:Dtpsy_2636 protein of unknown function DUF177 gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1258 Alide2_1259 Alide2_1259 Alide2_1259 1322031 1322213 + ribosomal protein L32 KEGG: aav:Aave_1181 50S ribosomal protein L32~TIGRFAM: Ribosomal protein L32p~PFAM: Ribosomal protein L32p gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1259 Alide2_1260 Alide2_1260 Alide2_1260 1322336 1323367 + Phosphate acyltransferase PFAM: Fatty acid synthesis PlsX protein~manually curated~TIGRFAM: Phospholipid biosynthesis protein%2C PlsX-like~KEGG: dia:Dtpsy_2634 putative glycerol-3-phosphate acyltransferase PlsX~HAMAP: Phospholipid biosynthesis protein%2C PlsX-like gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1260 Alide2_1261 Alide2_1261 Alide2_1261 1323389 1324369 + 3-oxoacyl-(acyl-carrier-protein) synthase III TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH)~KEGG: dia:Dtpsy_2633 3-oxoacyl-(acyl carrier protein) synthase III~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal%3B 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1261 Alide2_1262 Alide2_1262 Alide2_1262 1324431 1325384 + malonyl CoA-acyl carrier protein transacylase TIGRFAM: Malonyl CoA-acyl carrier protein transacylase~KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase~PFAM: Acyl transferase gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1262 Alide2_1263 Alide2_1263 Alide2_1263 1325381 1326118 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: dia:Dtpsy_2631 3-oxoacyl-(acyl-carrier-protein) reductase~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1263 Alide2_1264 Alide2_1264 Alide2_1264 1326222 1326461 + Acyl carrier protein SMART: Polyketide synthase%2C phosphopantetheine-binding~TIGRFAM: Acyl carrier protein (ACP)~KEGG: ctt:CtCNB1_0973 acyl carrier protein~HAMAP: Acyl carrier protein (ACP)~PFAM: Phosphopantetheine-binding gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1264 Alide2_1265 Alide2_1265 Alide2_1265 1326520 1327764 + 3-oxoacyl-(acyl-carrier-protein) synthase 2 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2~KEGG: dia:Dtpsy_2629 3-oxoacyl-(acyl-carrier-protein) synthase 2~PFAM: Beta-ketoacyl synthase%2C N-terminal%3B Beta-ketoacyl synthase%2C C-terminal gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1265 Alide2_1266 Alide2_1266 Alide2_1266 1327827 1328348 + hypothetical protein KEGG: dia:Dtpsy_2628 hypothetical protein gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1266 Alide2_1267 Alide2_1267 Alide2_1267 1328345 1328980 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: dia:Dtpsy_2627 RNA polymerase sigma factor RpoE~TIGRFAM: RNA polymerase sigma-70 RpoE type%3B RNA polymerase sigma-70~PFAM: RNA polymerase sigma factor 70%2C region 4 type 2%3B RNA polymerase sigma-70 region 2 gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1267 Alide2_1268 Alide2_1268 Alide2_1268 1329005 1329655 + Anti sigma-E protein RseA family protein PFAM: Anti sigma-E protein RseA%2C N-terminal~KEGG: dia:Dtpsy_2626 anti sigma-E protein%2C RseA gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1268 Alide2_1269 Alide2_1269 Alide2_1269 1329766 1330764 + sigma E regulatory protein%2C MucB/RseB KEGG: dia:Dtpsy_2625 sigma E regulatory protein%2C MucB/RseB~manually curated~PFAM: MucB/RseB gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1269 Alide2_1270 Alide2_1270 Alide2_1270 1330874 1332355 + protease Do SMART: PDZ/DHR/GLGF~TIGRFAM: Peptidase S1C%2C Do~KEGG: dia:Dtpsy_2624 protease Do~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1270 Alide2_1271 Alide2_1271 Alide2_1271 1332780 1334588 + GTP-binding protein LepA TIGRFAM: GTP-binding protein LepA%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B GTP-binding protein LepA%2C C-terminal%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C C-terminal~KEGG: dia:Dtpsy_2623 GTP-binding protein LepA~SMART: Translation elongation factor EFG/EF2%2C C-terminal gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1271 Alide2_1272 Alide2_1272 Alide2_1272 1334595 1335569 + signal peptidase I KEGG: dia:Dtpsy_2622 signal peptidase I~TIGRFAM: Peptidase S26A%2C signal peptidase I~PFAM: Peptidase S24/S26A/S26B%2C conserved region%3B Peptidase S26%2C conserved region gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1272 Alide2_1273 Alide2_1273 Alide2_1273 1335577 1335948 + putative transmembrane protein KEGG: dia:Dtpsy_2621 putative transmembrane protein gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1273 Alide2_1274 Alide2_1274 Alide2_1274 1335951 1336637 + Ribonuclease 3 KEGG: ajs:Ajs_3267 ribonuclease III~PFAM: Ribonuclease III%3B Double-stranded RNA-binding~TIGRFAM: Ribonuclease III%2C bacterial~HAMAP: Ribonuclease III%2C bacterial~SMART: Ribonuclease III%3B Double-stranded RNA-binding gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1274 Alide2_1275 Alide2_1275 Alide2_1275 1336706 1337647 + GTP-binding protein Era KEGG: dia:Dtpsy_2619 GTP-binding protein Era~TIGRFAM: GTP-binding protein Era%3B Small GTP-binding protein~PFAM: GTP-binding protein%2C HSR1-related%3B K Homology%2C type 2 gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1275 Alide2_1276 Alide2_1276 Alide2_1276 1337869 1338642 + DNA repair protein RecO KEGG: ajs:Ajs_3265 DNA repair protein RecO~TIGRFAM: Recombination protein O%2C RecO~PFAM: DNA replication/recombination mediator RecO%2C N-terminal%3B Recombination protein O%2C RecO gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1276 Alide2_1277 Alide2_1277 Alide2_1277 1338639 1339406 + pyridoxal phosphate biosynthetic protein PdxJ TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ~KEGG: dia:Dtpsy_2616 pyridoxine 5'-phosphate synthase~PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1277 Alide2_1278 Alide2_1278 Alide2_1278 1339464 1339856 + phosphopantetheine-protein transferase KEGG: dia:Dtpsy_2615 4'-phosphopantetheinyl transferase~TIGRFAM: Phosphopantethiene-protein transferase%3B Holo-[acyl carrier protein] synthase~PFAM: 4'-phosphopantetheinyl transferase gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1278 Alide2_1279 Alide2_1279 Alide2_1279 1339921 1341003 + glycoside hydrolase family 3 domain protein PFAM: Glycoside hydrolase%2C family 3%2C N-terminal~KEGG: dia:Dtpsy_2614 beta-N-acetylhexosaminidase gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1279 Alide2_1280 Alide2_1280 Alide2_1280 1341000 1342067 + 6-phosphofructokinase KEGG: ajs:Ajs_3260 6-phosphofructokinase~PFAM: Phosphofructokinase domain gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1280 Alide2_1281 Alide2_1281 Alide2_1281 1342148 1342858 - Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_2610 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1281 Alide2_1282 Alide2_1282 Alide2_1282 1342858 1343631 - Sulfate-transporting ATPase PFAM: ABC transporter-like~KEGG: xtr:100485612 putative ribose/galactose/methyl galactoside import ATP-binding protein-like~SMART: ATPase%2C AAA+ type%2C core gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1282 Alide2_1283 Alide2_1283 Alide2_1283 1343631 1344890 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease%3B High-affinity branched-chain amino acid transport system permease%2C LivHM%2C N-terminal~KEGG: dia:Dtpsy_2608 leucine/isoleucine/valine transporter permease subunit gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1283 Alide2_1284 Alide2_1284 Alide2_1284 1344890 1345816 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dia:Dtpsy_2607 inner-membrane translocator gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1284 Alide2_1285 Alide2_1285 Alide2_1285 1345937 1347055 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dac:Daci_4331 extracellular ligand-binding receptor gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1285 Alide2_1286 Alide2_1286 Alide2_1286 1347248 1347910 - MscS Mechanosensitive ion channel PFAM: Mechanosensitive ion channel MscS~KEGG: ajs:Ajs_3252 small-conductance mechanosensitive channel-like protein gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1286 Alide2_1287 Alide2_1287 Alide2_1287 1347907 1349454 - lysyl-tRNA synthetase TIGRFAM: Lysyl-tRNA synthetase%2C class II~KEGG: ajs:Ajs_3250 lysyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (D/K/N)%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1287 Alide2_1288 Alide2_1288 Alide2_1288 1349494 1350120 - sugar transferase PFAM: Bacterial sugar transferase~KEGG: lch:Lcho_0300 sugar transferase gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1288 Alide2_1289 Alide2_1289 Alide2_1289 1350127 1351299 - Glutamine--scyllo-inositol transaminase KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein~PFAM: DegT/DnrJ/EryC1/StrS aminotransferase gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1289 Alide2_1290 Alide2_1290 Alide2_1290 1351296 1351991 - Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: mpt:Mpe_A0605 hypothetical protein gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1290 Alide2_1291 Alide2_1291 Alide2_1291 1351988 1353016 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: bpt:Bpet1524 glycosyltransferase gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1291 Alide2_1292 Alide2_1292 Alide2_1292 1353013 1354062 - glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: bpt:Bpet1525 glycosyltransferase gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1292 Alide2_1293 Alide2_1293 Alide2_1293 1354064 1354666 - acetyltransferase KEGG: bpt:Bpet1526 acetyltransferase gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1293 Alide2_1294 Alide2_1294 Alide2_1294 1354650 1355882 - polysaccharide biosynthesis protein PFAM: Polysaccharide biosynthesis protein~KEGG: bpt:Bpet1527 hypothetical protein gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1294 Alide2_1295 Alide2_1295 Alide2_1295 1355879 1357780 - polysaccharide biosynthesis protein CapD PFAM: Polysaccharide biosynthesis protein CapD-like~KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein CapD gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1295 Alide2_1296 Alide2_1296 Alide2_1296 1357817 1358452 - peptidase S16 lon domain protein PFAM: Peptidase S16%2C lon N-terminal~KEGG: xtr:100498456 hypothetical protein LOC100498456 gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1296 Alide2_1297 Alide2_1297 Alide2_1297 1358546 1359094 + protein of unknown function YGGT PFAM: Uncharacterised protein family Ycf19~KEGG: dia:Dtpsy_2595 protein of unknown function YGGT gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1297 Alide2_1298 Alide2_1298 Alide2_1298 1359171 1360043 - acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase%2C beta subunit~KEGG: ajs:Ajs_3241 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha~PFAM: Carboxyl transferase gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1298 Alide2_1299 Alide2_1299 Alide2_1299 1360072 1360881 - tryptophan synthase%2C alpha subunit TIGRFAM: Tryptophan synthase%2C alpha chain~KEGG: ajs:Ajs_3240 tryptophan synthase subunit alpha~PFAM: Tryptophan synthase%2C alpha chain gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1299 Alide2_1300 Alide2_1300 Alide2_1300 1360878 1362146 - tryptophan synthase%2C beta subunit TIGRFAM: Tryptophan synthase%2C beta chain~KEGG: ajs:Ajs_3239 tryptophan synthase subunit beta~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1300 Alide2_1301 Alide2_1301 Alide2_1301 1362147 1362863 - Phosphoribosylanthranilate isomerase KEGG: ajs:Ajs_3238 phosphoribosylanthranilate isomerase~PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1301 Alide2_1302 Alide2_1302 Alide2_1302 1362860 1363678 - tRNA pseudouridine synthase A KEGG: dia:Dtpsy_2590 tRNA pseudouridine synthase A~TIGRFAM: Pseudouridine synthase I%2C TruA~PFAM: Pseudouridine synthase I%2C TruA%2C alpha/beta domain gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1302 Alide2_1303 Alide2_1303 Alide2_1303 1363743 1366415 - FimV N-terminal domain protein TIGRFAM: Motility protein FimV%2C N-terminal%3B Motility protein FimV%2C C-terminal~KEGG: ajs:Ajs_3236 putative transmembrane protein gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1303 Alide2_1304 Alide2_1304 Alide2_1304 1366638 1367750 - aspartate-semialdehyde dehydrogenase SMART: Semialdehyde dehydrogenase%2C NAD-binding~TIGRFAM: Aspartate-semialdehyde dehydrogenase%2C proteobacteria~KEGG: ctt:CtCNB1_1004 aspartate-semialdehyde dehydrogenase~PFAM: Semialdehyde dehydrogenase%2C dimerisation domain%3B Semialdehyde dehydrogenase%2C NAD-binding gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1304 Alide2_1305 Alide2_1305 Alide2_1305 1368020 1369090 - 3-isopropylmalate dehydrogenase TIGRFAM: Isopropylmalate dehydrogenase~KEGG: dia:Dtpsy_2586 3-isopropylmalate dehydrogenase~PFAM: Isocitrate/isopropylmalate dehydrogenase gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1305 Alide2_1306 Alide2_1306 Alide2_1306 1369165 1369815 - 3-isopropylmalate dehydratase%2C small subunit KEGG: dia:Dtpsy_2585 isopropylmalate isomerase small subunit~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit~PFAM: Aconitase A/isopropylmalate dehydratase small subunit%2C swivel gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1306 Alide2_1307 Alide2_1307 Alide2_1307 1369839 1369964 - Entericidin EcnAB PFAM: Entericidin EcnAB~KEGG: dac:Daci_5236 entericidin EcnAB gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1307 Alide2_1308 Alide2_1308 Alide2_1308 1369988 1371409 - 3-isopropylmalate dehydratase%2C large subunit KEGG: ajs:Ajs_3229 isopropylmalate isomerase large subunit~TIGRFAM: 3-isopropylmalate dehydratase%2C large subunit~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1308 Alide2_1309 Alide2_1309 Alide2_1309 1371430 1372368 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_2581 transcriptional regulator%2C LysR family gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1309 Alide2_1310 Alide2_1310 Alide2_1310 1372557 1373921 - Beta-Casp domain protein KEGG: dia:Dtpsy_2580 beta-lactamase domain protein~PFAM: Beta-Casp domain%3B RNA-metabolising metallo-beta-lactamase%3B Beta-lactamase-like~SMART: Beta-lactamase-like gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1310 Alide2_1311 Alide2_1311 Alide2_1311 1373962 1375110 - cytochrome P450 PFAM: Cytochrome P450~KEGG: ajs:Ajs_3226 cytochrome P450 gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1311 Alide2_1312 Alide2_1312 Alide2_1312 1375129 1376613 - UbiD family decarboxylase KEGG: ajs:Ajs_3225 3-octaprenyl-4hydroxybenzoate decarboxylase~TIGRFAM: Carboxylyase-related~PFAM: Carboxylyase-related gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1312 Alide2_1313 Alide2_1313 Alide2_1313 1376669 1377253 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KEGG: dia:Dtpsy_2577 3-octaprenyl-4-hydroxybenzoate carboxy-lyase~TIGRFAM: Phenylacrylic acid decarboxylase~PFAM: Flavoprotein gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1313 Alide2_1314 Alide2_1314 Alide2_1314 1377250 1377657 - DGC domain protein PFAM: DGC~KEGG: ajs:Ajs_3223 hypothetical protein gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1314 Alide2_1315 Alide2_1315 Alide2_1315 1377654 1378172 - Sterol-binding domain protein PFAM: SCP2 sterol-binding domain~KEGG: ajs:Ajs_3222 hypothetical protein gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1315 Alide2_1316 Alide2_1316 Alide2_1316 1378192 1379115 - peptidase U32 PFAM: Peptidase U32~KEGG: ajs:Ajs_3221 peptidase U32 gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1316 Alide2_1317 Alide2_1317 Alide2_1317 1379121 1380242 - peptidase U32 PFAM: Peptidase U32~KEGG: ajs:Ajs_3220 peptidase U32 gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1317 Alide2_1318 Alide2_1318 Alide2_1318 1380441 1381811 + Tryptophanase KEGG: rfr:Rfer_2475 tryptophanase~PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1318 Alide2_1319 Alide2_1319 Alide2_1319 1381885 1382550 - PEP motif putative anchor domain protein KEGG: maq:Maqu_1010 hypothetical protein~TIGRFAM: PEP-CTERM anchor~PFAM: PEP-CTERM bacterial gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1319 Alide2_1320 Alide2_1320 Alide2_1320 1382765 1383898 - chaperone protein DnaJ TIGRFAM: Chaperone DnaJ~PFAM: Chaperone DnaJ%2C C-terminal%3B Heat shock protein DnaJ%2C cysteine-rich domain%3B Heat shock protein DnaJ%2C N-terminal~KEGG: dia:Dtpsy_2572 chaperone protein DnaJ~SMART: Heat shock protein DnaJ%2C N-terminal gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1320 Alide2_1321 Alide2_1321 Alide2_1321 1383994 1385937 - chaperone protein DnaK KEGG: dia:Dtpsy_2571 molecular chaperone DnaK~TIGRFAM: Chaperone DnaK~PFAM: Heat shock protein 70 gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1321 Alide2_1322 Alide2_1322 Alide2_1322 1386030 1386572 - GrpE protein PFAM: GrpE nucleotide exchange factor~KEGG: dia:Dtpsy_2570 heat shock protein GrpE gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1322 Alide2_1323 Alide2_1323 Alide2_1323 1386808 1387182 + ribosomal protein S6 KEGG: dia:Dtpsy_2569 30S ribosomal protein S6~TIGRFAM: Ribosomal protein S6~PFAM: Ribosomal protein S6 gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1323 Alide2_1324 Alide2_1324 Alide2_1324 1387205 1387495 + single-strand binding protein/Primosomal replication protein n PFAM: Primosome PriB/single-strand DNA-binding~KEGG: dia:Dtpsy_2568 putative primosomal replication protein gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1324 Alide2_1325 Alide2_1325 Alide2_1325 1387514 1387795 + 30S ribosomal protein S18 TIGRFAM: Ribosomal protein S18~HAMAP: Ribosomal protein S18~KEGG: aav:Aave_1230 30S ribosomal protein S18~PFAM: Ribosomal protein S18 gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1325 Alide2_1326 Alide2_1326 Alide2_1326 1387810 1388262 + ribosomal protein L9 KEGG: dia:Dtpsy_2566 50S ribosomal protein L9~TIGRFAM: Ribosomal protein L9%2C bacteria/chloroplast~PFAM: Ribosomal protein L9%2C C-terminal%3B Ribosomal protein L9%2C N-terminal gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1326 Alide2_1327 Alide2_1327 Alide2_1327 1388384 1389862 + replicative DNA helicase TIGRFAM: DNA helicase%2C DnaB type~PFAM: DNA helicase%2C DnaB-like%2C C-terminal%3B DNA helicase%2C DnaB-like%2C N-terminal~KEGG: dia:Dtpsy_2565 replicative DNA helicase~SMART: ATPase%2C AAA+ type%2C core gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1327 Alide2_1328 Alide2_1328 Alide2_1328 1389933 1391465 + L-aminoadipate-semialdehyde dehydrogenase KEGG: bpd:BURPS668_A2080 putative piperideine-6-carboxylate dehydrogenase~PFAM: Aldehyde dehydrogenase domain gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1328 Alide2_1329 Alide2_1329 Alide2_1329 1391537 1393276 - PhoH family protein KEGG: dia:Dtpsy_2563 PhoH family protein~PFAM: PhoH-like protein~SMART: Nucleotide binding protein%2C PINc gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1329 Alide2_1330 Alide2_1330 Alide2_1330 1393433 1393921 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant~KEGG: dia:Dtpsy_2562 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1330 Alide2_1331 Alide2_1331 Alide2_1331 1394099 1394788 - hypothetical protein KEGG: ajs:Ajs_1106 hypothetical protein gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1331 Alide2_1332 Alide2_1332 Alide2_1332 1395046 1395633 + Cytochrome b/b6 domain protein PFAM: Cytochrome b/b6%2C N-terminal~KEGG: dia:Dtpsy_1026 cytochrome b561 gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1332 Alide2_1333 Alide2_1333 Alide2_1333 1395630 1396250 + YceI family protein KEGG: dia:Dtpsy_1027 YceI family protein~PFAM: Lipid/polyisoprenoid-binding%2C YceI-like~SMART: Lipid/polyisoprenoid-binding%2C YceI-like gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1333 Alide2_1334 Alide2_1334 Alide2_1334 1396305 1396880 + YceI family protein KEGG: dia:Dtpsy_1028 YceI family protein~PFAM: Lipid/polyisoprenoid-binding%2C YceI-like~SMART: Lipid/polyisoprenoid-binding%2C YceI-like gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1334 Alide2_1335 Alide2_1335 Alide2_1335 1396950 1399259 - Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) PFAM: Phosphate acetyl/butaryl transferase%3B Malic enzyme%2C NAD-binding%3B Malic enzyme%2C N-terminal~KEGG: ajs:Ajs_1112 malic enzyme~SMART: Malic enzyme%2C NAD-binding gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1335 Alide2_1336 Alide2_1336 Alide2_1336 1399397 1400884 - xanthine permease KEGG: dac:Daci_2107 xanthine permease~TIGRFAM: Xanthine permease%3B Xanthine/uracil permease~PFAM: Xanthine/uracil/vitamin C permease gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1336 Alide2_1337 Alide2_1337 Alide2_1337 1401235 1402710 + methyl-accepting chemotaxis sensory transducer KEGG: dia:Dtpsy_2395 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1337 Alide2_1338 Alide2_1338 Alide2_1338 1403088 1403837 + pseudogene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1338 Alide2_1339 Alide2_1339 Alide2_1339 1403899 1405152 - peptidase dimerization domain protein PFAM: Peptidase M20%2C dimerisation%3B Peptidase M20~KEGG: dia:Dtpsy_1035 peptidase dimerisation domain protein gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1339 Alide2_1340 Alide2_1340 Alide2_1340 1405149 1406924 - amidase%2C hydantoinase/carbamoylase family TIGRFAM: Amidase%2C hydantoinase/carbamoylase%3B 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase%2C type 1~KEGG: ajs:Ajs_1115 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase~PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase%3B Peptidase M20 gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1340 Alide2_1341 Alide2_1341 Alide2_1341 1406989 1407948 - urate catabolism protein TIGRFAM: Putative urate catabolism protein~KEGG: dia:Dtpsy_1037 urate catabolism protein~PFAM: Polysaccharide deacetylase gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1341 Alide2_1342 Alide2_1342 Alide2_1342 1407945 1408622 - transcriptional regulator%2C GntR family KEGG: dia:Dtpsy_1038 transcriptional regulator%2C GntR family~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR%3B GntR%2C C-terminal gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1342 Alide2_1343 Alide2_1343 Alide2_1343 1408677 1409591 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_1039 transcriptional regulator%2C LysR family gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1343 Alide2_1344 Alide2_1344 Alide2_1344 1409718 1410785 + tartrate dehydrogenase TIGRFAM: Tartrate dehydrogenase~KEGG: ajs:Ajs_1120 tartrate dehydrogenase~PFAM: Isocitrate/isopropylmalate dehydrogenase gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1344 Alide2_1345 Alide2_1345 Alide2_1345 1410820 1411803 + hypothetical protein KEGG: dia:Dtpsy_1041 hypothetical protein gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1345 Alide2_1346 Alide2_1346 Alide2_1346 1411882 1413204 + Hydroxypyruvate reductase KEGG: ajs:Ajs_1122 hydroxypyruvate reductase~PFAM: MOFRL domain gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1346 Alide2_1347 Alide2_1347 Alide2_1347 1413232 1414125 - transcriptional regulator%2C LysR family PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~KEGG: axy:AXYL_05357 LysR family regulatory helix-turn-helix protein 171 gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1347 Alide2_1348 Alide2_1348 Alide2_1348 1414323 1415651 + 2%2C2-dialkylglycine decarboxylase (pyruvate) KEGG: axy:AXYL_05358 2%2C2-dialkylglycine decarboxylase~PFAM: Aminotransferase class-III gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1348 Alide2_1349 Alide2_1349 Alide2_1349 1415703 1416593 + ABC-type transporter%2C periplasmic subunit family 3 KEGG: lch:Lcho_4024 extracellular solute-binding protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1349 Alide2_1350 Alide2_1350 Alide2_1350 1416672 1417601 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_2116 LysR family transcriptional regulator gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1350 Alide2_1351 Alide2_1351 Alide2_1351 1417712 1419502 + glyoxylate carboligase TIGRFAM: Glyoxylate carboligase~KEGG: dac:Daci_2117 glyoxylate carboligase~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain%3B Thiamine pyrophosphate enzyme%2C central domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1351 Alide2_1352 Alide2_1352 Alide2_1352 1419532 1420332 + hydroxypyruvate isomerase TIGRFAM: Hydroxypyruvate isomerase~KEGG: ctt:CtCNB1_3709 xylose isomerase-like TIM barrel~PFAM: Xylose isomerase%2C TIM barrel domain gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1352 Alide2_1353 Alide2_1353 Alide2_1353 1420380 1421294 + 2-hydroxy-3-oxopropionate reductase TIGRFAM: 2-hydroxy-3-oxopropionate reductase~KEGG: dac:Daci_2119 2-hydroxy-3-oxopropionate reductase~PFAM: 6-phosphogluconate dehydrogenase%2C NAD-binding gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1353 Alide2_1354 Alide2_1354 Alide2_1354 1421347 1421700 + pseudogene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1354 Alide2_1355 Alide2_1355 Alide2_1355 1421787 1422332 + hypothetical protein KEGG: dac:Daci_0940 hypothetical protein gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1355 Alide2_1356 Alide2_1356 Alide2_1356 1422329 1424119 - gamma-glutamyltransferase TIGRFAM: Gamma-glutamyltranspeptidase~KEGG: dac:Daci_2120 gamma-glutamyltransferase~PFAM: Gamma-glutamyltranspeptidase gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1356 Alide2_1357 Alide2_1357 Alide2_1357 1424262 1424612 + hydroxyisourate hydrolase TIGRFAM: Hydroxyisourate hydrolase~KEGG: dia:Dtpsy_1043 hydroxyisourate hydrolase~PFAM: Transthyretin/hydroxyisourate hydrolase gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1357 Alide2_1358 Alide2_1358 Alide2_1358 1424771 1425298 - hypothetical protein KEGG: dia:Dtpsy_1044 hypothetical protein gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1358 Alide2_1359 Alide2_1359 Alide2_1359 1425361 1426194 + xanthine dehydrogenase accessory protein XdhC TIGRFAM: Xanthine dehydrogenase accessory protein XdhC~KEGG: ajs:Ajs_1125 hypothetical protein gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1359 Alide2_1360 Alide2_1360 Alide2_1360 1426476 1427693 + protein of unknown function DUF989 PFAM: Protein of unknown function DUF989~KEGG: ajs:Ajs_1128 hypothetical protein gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1360 Alide2_1361 Alide2_1361 Alide2_1361 1427811 1428377 + deoxycytidine triphosphate deaminase TIGRFAM: Deoxycytidine triphosphate deaminase~KEGG: dia:Dtpsy_1050 deoxycytidine triphosphate deaminase~PFAM: DeoxyUTP pyrophosphatase domain gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1361 Alide2_1362 Alide2_1362 Alide2_1362 1428442 1429305 + protein of unknown function zinc metallopeptidase PFAM: Uncharacterised protein family%2C zinc metallopeptidase putative~KEGG: dia:Dtpsy_1052 protein of unknown function zinc metallopeptidase putative gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1362 Alide2_1363 Alide2_1363 Alide2_1363 1429394 1430836 + DEAD/DEAH box helicase domain protein KEGG: dia:Dtpsy_1053 DEAD/DEAH box helicase domain protein~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1363 Alide2_1364 Alide2_1364 Alide2_1364 1430937 1431551 - NosL family protein PFAM: Nitrous oxide reductase accessory protein NosL~KEGG: dia:Dtpsy_1054 hypothetical protein gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1364 Alide2_1365 Alide2_1365 Alide2_1365 1431603 1432139 - NosL family protein PFAM: Nitrous oxide reductase accessory protein NosL~KEGG: dia:Dtpsy_1055 NosL family protein gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1365 Alide2_1366 Alide2_1366 Alide2_1366 1432136 1432951 - ABC-2 type transporter KEGG: dia:Dtpsy_1056 ABC-2 type transporter gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1366 Alide2_1367 Alide2_1367 Alide2_1367 1432967 1433899 - Sulfate-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_1057 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1367 Alide2_1368 Alide2_1368 Alide2_1368 1433874 1435142 - parallel beta-helix repeat protein TIGRFAM: Parallel beta-helix repeat-2~PFAM: Periplasmic copper-binding%3B Domain of unknown function DUF1565~KEGG: dia:Dtpsy_1058 periplasmic copper-binding~SMART: Carbohydrate-binding/sugar hydrolysis domain%3B Parallel beta-helix repeat gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1368 Alide2_1369 Alide2_1369 Alide2_1369 1435139 1437760 - nitrous oxide expression regulator%2C NosR KEGG: dia:Dtpsy_1059 FMN-binding domain protein~PFAM: FMN-binding~SMART: FMN-binding gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1369 Alide2_1370 Alide2_1370 Alide2_1370 1437824 1439758 - Nitrous-oxide reductase KEGG: ajs:Ajs_1139 nitrous-oxide reductase~PFAM: Cytochrome c oxidase subunit II C-terminal gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1370 Alide2_1371 Alide2_1371 Alide2_1371 1439780 1440139 - hypothetical protein KEGG: dia:Dtpsy_1061 hypothetical protein gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1371 Alide2_1372 Alide2_1372 Alide2_1372 1440367 1440780 + cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: dia:Dtpsy_1062 cytochrome c class I gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1372 Alide2_1373 Alide2_1373 Alide2_1373 1440800 1441840 + ApbE family lipoprotein PFAM: Thiamine synthesis ApbE/UPF0280~KEGG: dia:Dtpsy_1063 ApbE family lipoprotein gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1373 Alide2_1374 Alide2_1374 Alide2_1374 1441942 1442787 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)~KEGG: dia:Dtpsy_1064 diadenosine tetraphosphatase~PFAM: Metallo-dependent phosphatase gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1374 Alide2_1375 Alide2_1375 Alide2_1375 1443102 1443398 + histone family protein nucleoid-structuring protein H-NS PFAM: Histone-like nucleoid-structuring protein H-NS~KEGG: dia:Dtpsy_1065 histone family protein nucleoid-structuring protein H-NS gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1375 Alide2_1376 Alide2_1376 Alide2_1376 1443671 1446577 + aconitate hydratase 1 TIGRFAM: Aconitase/iron regulatory protein 2~KEGG: ajs:Ajs_1145 aconitate hydratase~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%3B Aconitase A/isopropylmalate dehydratase small subunit%2C swivel gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1376 Alide2_1377 Alide2_1377 Alide2_1377 1446600 1447820 + FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: ajs:Ajs_1146 monooxygenase%2C FAD-binding gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1377 Alide2_1378 Alide2_1378 Alide2_1378 1447872 1449110 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: dia:Dtpsy_1068 major facilitator superfamily MFS_1 gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1378 Alide2_1379 Alide2_1379 Alide2_1379 1449136 1450341 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: bpe:BP2600 hypothetical protein gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1379 Alide2_1380 Alide2_1380 Alide2_1380 1450518 1451324 - two component transcriptional regulator%2C LytTR family KEGG: dia:Dtpsy_1069 two component transcriptional regulator%2C LytTR family~PFAM: LytTr%2C DNA-binding domain%3B Signal transduction response regulator%2C receiver domain~SMART: LytTr%2C DNA-binding domain%3B Signal transduction response regulator%2C receiver domain gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1380 Alide2_1381 Alide2_1381 Alide2_1381 1451293 1452348 - signal transduction histidine kinase%2C LytS PFAM: Signal transduction histidine kinase%2C internal region%3B ATPase-like%2C ATP-binding domain~KEGG: vei:Veis_2283 signal transduction histidine kinase%2C LytS gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1381 Alide2_1382 Alide2_1382 Alide2_1382 1452358 1452729 - hypothetical protein KEGG: vei:Veis_2284 hypothetical protein gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1382 Alide2_1383 Alide2_1383 Alide2_1383 1452741 1453292 - hypothetical protein KEGG: xtr:100495621 UPF0065 protein in clcB-clcD intergenic region-like gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1383 Alide2_1384 Alide2_1384 Alide2_1384 1453479 1454303 + Undecaprenyl-diphosphatase TIGRFAM: Bacitracin resistance protein BacA~HAMAP: Bacitracin resistance protein BacA~KEGG: ajs:Ajs_1152 undecaprenyl pyrophosphate phosphatase~PFAM: Bacitracin resistance protein BacA gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1384 Alide2_1385 Alide2_1385 Alide2_1385 1454319 1455131 - alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: dia:Dtpsy_1074 alpha/beta hydrolase fold protein gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1385 Alide2_1386 Alide2_1386 Alide2_1386 1455443 1456867 + efflux transporter%2C RND family%2C MFP subunit KEGG: dac:Daci_2256 RND family efflux transporter MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD%3B Uncharacterised protein domain Spy-rel gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1386 Alide2_1387 Alide2_1387 Alide2_1387 1456904 1460020 + acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: dac:Daci_2257 acriflavin resistance protein gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1387 Alide2_1388 Alide2_1388 Alide2_1388 1460141 1463266 + acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: dac:Daci_2258 acriflavin resistance protein gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1388 Alide2_1389 Alide2_1389 Alide2_1389 1463269 1464681 + RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: dac:Daci_2259 RND efflux system outer membrane lipoprotein~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1389 Alide2_1390 Alide2_1390 Alide2_1390 1464694 1467306 - DNA mismatch repair protein mutS KEGG: dia:Dtpsy_1076 DNA mismatch repair protein MutS~PFAM: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS-like%2C N-terminal%3B DNA mismatch repair protein MutS%2C connector%3B DNA mismatch repair protein MutS%2C core%3B DNA mismatch repair protein MutS%2C clamp~manually curated~TIGRFAM: DNA mismatch repair protein MutS%2C type 1~SMART: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS%2C core~HAMAP: DNA mismatch repair protein MutS%2C type 1 gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1390 Alide2_1391 Alide2_1391 Alide2_1391 1467629 1468303 - regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: bph:Bphy_3516 TetR family transcriptional regulator gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1391 Alide2_1392 Alide2_1392 Alide2_1392 1468421 1469257 + Ureidoglycolate lyase KEGG: bja:bll6360 putative bifunctional enzyme 2-hydroxyhepta-2%2C4-diene-1%2C7-dioatesomerase 5-carboxymethyl-2-oxo-hex-3-ene-1%2C7-dioatedecarboxylase protein~PFAM: Fumarylacetoacetase%2C C-terminal-like gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1392 Alide2_1393 Alide2_1393 Alide2_1393 1469339 1470274 + pseudogene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1393 Alide2_1394 Alide2_1394 Alide2_1394 1470288 1470753 + pseudogene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1394 Alide2_1395 Alide2_1395 Alide2_1395 1470832 1471062 + hypothetical protein gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1395 Alide2_1396 Alide2_1396 Alide2_1396 1471098 1472084 - hypothetical protein KEGG: dac:Daci_5118 hypothetical protein gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1396 Alide2_1397 Alide2_1397 Alide2_1397 1472123 1473319 - L-lactate dehydrogenase (cytochrome) KEGG: dac:Daci_0789 FMN-dependent alpha-hydroxy acid dehydrogenase~PFAM: FMN-dependent dehydrogenase gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1397 Alide2_1398 Alide2_1398 Alide2_1398 1473432 1474346 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_0788 LysR family transcriptional regulator gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1398 Alide2_1399 Alide2_1399 Alide2_1399 1474383 1475963 - Alkaline phosphatase KEGG: dia:Dtpsy_1077 alkaline phosphatase~PFAM: Alkaline phosphatase D-related gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1399 Alide2_1400 Alide2_1400 Alide2_1400 1475990 1477570 - diguanylate cyclase SMART: Diguanylate cyclase%2C predicted~TIGRFAM: Diguanylate cyclase%2C predicted~KEGG: dia:Dtpsy_1078 diguanylate cyclase~PFAM: Diguanylate cyclase%2C predicted gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1400 Alide2_1401 Alide2_1401 Alide2_1401 1477636 1478457 + stationary-phase survival protein SurE TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase~KEGG: ajs:Ajs_1160 stationary phase survival protein SurE~PFAM: Survival protein SurE-like phosphatase/nucleotidase gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1401 Alide2_1402 Alide2_1402 Alide2_1402 1478457 1479230 + protein-L-isoaspartate O-methyltransferase TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase~KEGG: dia:Dtpsy_1081 protein-L-isoaspartate O-methyltransferase~PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1402 Alide2_1403 Alide2_1403 Alide2_1403 1479242 1480144 + Peptidase M23 KEGG: dia:Dtpsy_1082 peptidase M23~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1403 Alide2_1404 Alide2_1404 Alide2_1404 1480141 1481151 + pseudouridine synthase%2C RluA family TIGRFAM: Pseudouridine synthase%2C RluC/RluD~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4~KEGG: dia:Dtpsy_1083 pseudouridine synthase%2C RluA family~SMART: RNA-binding S4 gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1404 Alide2_1405 Alide2_1405 Alide2_1405 1481320 1481988 + chromosome segregation and condensation protein%2C ScpB KEGG: dia:Dtpsy_1084 chromosome segregation and condensation protein%2C ScpB~TIGRFAM: Chromosome segregation/condensation protein ScpB%2C prokaryote~PFAM: Chromosome segregation/condensation protein ScpB%2C prokaryote gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1405 Alide2_1406 Alide2_1406 Alide2_1406 1481990 1483345 + pseudouridine synthase Rsu TIGRFAM: Pseudouridine synthase%2C RsuA/RluB/E/F~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4~KEGG: dia:Dtpsy_1085 pseudouridine synthase~SMART: RNA-binding S4 gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1406 Alide2_1407 Alide2_1407 Alide2_1407 1483424 1483849 + Nucleoside-diphosphate kinase PFAM: Nucleoside diphosphate kinase~KEGG: ajs:Ajs_1166 nucleoside diphosphate kinase~SMART: Nucleoside diphosphate kinase gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1407 Alide2_1408 Alide2_1408 Alide2_1408 1483937 1485061 + Ribosomal RNA large subunit methyltransferase N TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN%3B~HAMAP: Ribosomal RNA large subunit methyltransferase RlmN%3B~KEGG: dia:Dtpsy_1087 radical SAM enzyme%2C Cfr family~PFAM: Radical SAM gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1408 Alide2_1409 Alide2_1409 Alide2_1409 1485083 1485910 + type IV pilus biogenesis/stability protein PilW KEGG: dia:Dtpsy_1088 type IV pilus biogenesis/stability protein PilW~TIGRFAM: Pilus biogenesis/stability type IV%2C PilW~PFAM: Tetratricopeptide TPR-1 gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1409 Alide2_1410 Alide2_1410 Alide2_1410 1485903 1486799 + hypothetical protein KEGG: dia:Dtpsy_1089 hypothetical protein gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1410 Alide2_1411 Alide2_1411 Alide2_1411 1486800 1488074 + 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase KEGG: dia:Dtpsy_1090 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase~TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type~PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1411 Alide2_1412 Alide2_1412 Alide2_1412 1488158 1489447 + Histidyl-tRNA synthetase PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain%3B Anticodon-binding~TIGRFAM: Histidyl-tRNA synthetase%2C class IIa%2C subgroup~HAMAP: Histidyl-tRNA synthetase%2C class IIa%2C subgroup~KEGG: dia:Dtpsy_1091 histidyl-tRNA synthetase gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1412 Alide2_1413 Alide2_1413 Alide2_1413 1489463 1490143 + Protein of unknown function DUF2133 PFAM: Protein of unknown function DUF2133~KEGG: dia:Dtpsy_1092 hypothetical protein gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1413 Alide2_1414 Alide2_1414 Alide2_1414 1490140 1491288 + outer membrane assembly lipoprotein YfgL KEGG: dia:Dtpsy_1093 outer membrane assembly lipoprotein YfgL~TIGRFAM: Outer membrane assembly lipoprotein YfgL~PFAM: Pyrrolo-quinoline quinone repeat gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1414 Alide2_1415 Alide2_1415 Alide2_1415 1491307 1492650 + ribosome-associated GTPase EngA KEGG: dia:Dtpsy_1094 GTP-binding protein EngA~TIGRFAM: GTP-binding%2C EngA%3B Small GTP-binding protein~PFAM: GTP-binding protein%2C HSR1-related gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1415 Alide2_1416 Alide2_1416 Alide2_1416 1492674 1492976 + RNA chaperone Hfq KEGG: dia:Dtpsy_1095 RNA chaperone Hfq~TIGRFAM: Host factor Hfq~PFAM: Like-Sm ribonucleoprotein (LSM) domain gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1416 Alide2_1417 Alide2_1417 Alide2_1417 1493041 1494219 + GTP-binding proten HflX KEGG: ajs:Ajs_1176 small GTP-binding protein~TIGRFAM: GTP-binding protein%2C HflX~PFAM: GTP-binding protein%2C HSR1-related gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1417 Alide2_1418 Alide2_1418 Alide2_1418 1494272 1495648 + HflK protein TIGRFAM: HflK~PFAM: Band 7 protein%3B Protein HflK%2C N-terminal~KEGG: dia:Dtpsy_1097 HflK protein~SMART: Band 7 protein gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1418 Alide2_1419 Alide2_1419 Alide2_1419 1495658 1496572 + HflC protein TIGRFAM: HflC~PFAM: Band 7 protein~KEGG: ajs:Ajs_1178 HflC protein~SMART: Band 7 protein gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1419 Alide2_1420 Alide2_1420 Alide2_1420 1496601 1496789 + Protein of unknown function DUF2065 PFAM: Protein of unknown function DUF2065~KEGG: ajs:Ajs_1179 hypothetical protein gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1420 Alide2_1421 Alide2_1421 Alide2_1421 1496864 1498012 + histidyl-tRNA synthetase 2 TIGRFAM: Histidyl-tRNA synthetase%2C class IIa%2C putative~KEGG: ajs:Ajs_1180 tRNA synthetase%2C class II (G%2C H%2C P and S) gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1421 Alide2_1422 Alide2_1422 Alide2_1422 1498040 1499416 + adenylosuccinate synthetase SMART: Adenylosuccinate synthetase~TIGRFAM: Adenylosuccinate synthetase~KEGG: dia:Dtpsy_1101 adenylosuccinate synthetase~PFAM: Adenylosuccinate synthetase gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1422 Alide2_1423 Alide2_1423 Alide2_1423 1499488 1500012 + phosphoribosyltransferase PFAM: Phosphoribosyltransferase~KEGG: ajs:Ajs_1182 phosphoribosyltransferase gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1423 Alide2_1424 Alide2_1424 Alide2_1424 1505864 1506601 + pseudouridine synthase Rsu KEGG: ajs:Ajs_1183 ribosomal small subunit pseudouridine synthase A~TIGRFAM: Pseudouridine synthase%2C RsuA/RluB/E/F~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1424 Alide2_1425 Alide2_1425 Alide2_1425 1506709 1507674 + hypothetical protein KEGG: dia:Dtpsy_1104 hypothetical protein gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1425 Alide2_1426 Alide2_1426 Alide2_1426 1507688 1508491 + polysaccharide deacetylase KEGG: dia:Dtpsy_1105 polysaccharide deacetylase~manually curated~PFAM: Polysaccharide deacetylase gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1426 Alide2_1427 Alide2_1427 Alide2_1427 1508533 1509531 + fatty acid hydroxylase PFAM: Fatty acid hydroxylase~KEGG: dia:Dtpsy_1106 fatty acid hydroxylase gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1427 Alide2_1428 Alide2_1428 Alide2_1428 1509559 1510452 + protein of unknown function DUF540 PFAM: Uncharacterised protein family CysZ~KEGG: dia:Dtpsy_1107 putative transmembrane protein gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1428 Alide2_1429 Alide2_1429 Alide2_1429 1510449 1511270 + molybdopterin binding domain protein KEGG: ajs:Ajs_1188 molybdopterin binding domain-containing protein~PFAM: Molybdopterin binding~SMART: Molybdopterin binding gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1429 Alide2_1430 Alide2_1430 Alide2_1430 1511442 1512857 + glutamine synthetase%2C type I TIGRFAM: Glutamine synthetase type I~KEGG: aav:Aave_1442 L-glutamine synthetase~PFAM: Glutamine synthetase%2C catalytic domain%3B Glutamine synthetase%2C beta-Grasp gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1430 Alide2_1431 Alide2_1431 Alide2_1431 1513031 1513519 + hypothetical protein KEGG: dia:Dtpsy_1110 putative signal peptide protein gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1431 Alide2_1432 Alide2_1432 Alide2_1432 1513544 1514614 + signal transduction histidine kinase%2C nitrogen specific%2C NtrB manually curated~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~KEGG: dia:Dtpsy_1111 signal transduction histidine kinase%2C nitrogen specific%2C NtrB~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1432 Alide2_1433 Alide2_1433 Alide2_1433 1514656 1516095 + nitrogen metabolism transcriptional regulator%2C NtrC%2C Fis Family TIGRFAM: Signal transduction response regulator%2C nitrogen regulation NR(I)~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver domain%3B Helix-turn-helix%2C Fis-type~KEGG: dia:Dtpsy_1112 nitrogen metabolism transcriptional regulator%2C NtrC%2C fis family~SMART: Signal transduction response regulator%2C receiver domain%3B ATPase%2C AAA+ type%2C core gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1433 Alide2_1434 Alide2_1434 Alide2_1434 1516420 1517196 - exodeoxyribonuclease III Xth TIGRFAM: Exodeoxyribonuclease III xth%3B AP endonuclease%2C family 1~KEGG: dia:Dtpsy_1114 exodeoxyribonuclease III Xth~PFAM: Endonuclease/exonuclease/phosphatase gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1434 Alide2_1435 Alide2_1435 Alide2_1435 1517203 1517493 - hypothetical protein KEGG: shn:Shewana3_1258 XRE family transcriptional regulator gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1435 Alide2_1436 Alide2_1436 Alide2_1436 1517706 1519406 + potassium-transporting ATPase%2C A subunit TIGRFAM: ATPase%2C K+ transporting%2C A subunit~KEGG: pap:PSPA7_3712 potassium-transporting ATPase subunit A~PFAM: ATPase%2C K+ transporting%2C A subunit gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1436 Alide2_1437 Alide2_1437 Alide2_1437 1519418 1521442 + Potassium-transporting ATPase B chain PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Haloacid dehalogenase-like hydrolase~TIGRFAM: Potassium-transporting ATPase%2C B chain%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~HAMAP: Potassium-transporting ATPase%2C B chain~KEGG: tgr:Tgr7_1888 potassium-transporting ATPase subunit B gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1437 Alide2_1438 Alide2_1438 Alide2_1438 1521456 1522088 + potassium-transporting ATPase%2C C subunit TIGRFAM: Potassium transporting ATPase%2C C subunit~KEGG: pap:PSPA7_3714 K+-transporting ATPase subunit C~PFAM: Potassium transporting ATPase%2C C subunit gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1438 Alide2_1439 Alide2_1439 Alide2_1439 1522104 1524833 + Osmosensitive K channel His kinase sensor KEGG: tgr:Tgr7_1885 sensor protein KdpD~PFAM: Signal transduction histidine kinase%2C osmosensitive K+ channel sensor%2C N-terminal%3B ATPase-like%2C ATP-binding domain%3B UspA%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B GAF gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1439 Alide2_1440 Alide2_1440 Alide2_1440 1524838 1525548 + two component transcriptional regulator%2C winged helix family KEGG: tgr:Tgr7_1884 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1440 Alide2_1441 Alide2_1441 Alide2_1441 1525625 1526002 + putative transposase-related protein KEGG: rle:pRL110581 putative transposase-related protein gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1441 Alide2_1442 Alide2_1442 Alide2_1442 1525999 1526385 + transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: nwi:Nwi_1015 transposase%2C IS4 gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1442 Alide2_1443 Alide2_1443 Alide2_1443 1526573 1527244 + Protein of unknown function DUF3348 PFAM: Protein of unknown function DUF3348~KEGG: vap:Vapar_3241 hypothetical protein gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1443 Alide2_1444 Alide2_1444 Alide2_1444 1527241 1529979 + OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal%3B Domain of unknown function DUF802~KEGG: vap:Vapar_3240 protein of unknown function DUF802 gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1444 Alide2_1445 Alide2_1445 Alide2_1445 1530014 1530545 + pseudogene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1445 Alide2_1446 Alide2_1446 Alide2_1446 1530511 1531005 - Dihydrofolate reductase KEGG: dia:Dtpsy_1115 dihydrofolate reductase~PFAM: Dihydrofolate reductase domain gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1446 Alide2_1447 Alide2_1447 Alide2_1447 1531002 1531817 - thymidylate synthase TIGRFAM: Thymidylate synthase~KEGG: ajs:Ajs_1197 thymidylate synthase~PFAM: Thymidylate synthase gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1447 Alide2_1448 Alide2_1448 Alide2_1448 1531870 1533294 - D-lactate dehydrogenase (cytochrome) KEGG: dia:Dtpsy_1117 FAD linked oxidase domain protein~PFAM: FAD-linked oxidase%2C C-terminal%3B FAD linked oxidase%2C N-terminal gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1448 Alide2_1449 Alide2_1449 Alide2_1449 1533291 1533719 - Protein of unknown function DUF2069%2C membrane PFAM: Protein of unknown function DUF2069%2C membrane~KEGG: dia:Dtpsy_1118 membrane protein-like protein gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1449 Alide2_1450 Alide2_1450 Alide2_1450 1533741 1534994 + ribonuclease BN KEGG: dia:Dtpsy_1119 ribonuclease BN~TIGRFAM: Ribonuclease BN~PFAM: Ribonuclease BN-related gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1450 Alide2_1451 Alide2_1451 Alide2_1451 1535196 1537220 - Protein of unknown function DUF2868 PFAM: Protein of unknown function DUF2868%3B Protein of unknown function DUF3482~KEGG: pna:Pnap_2063 hypothetical protein gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1451 Alide2_1452 Alide2_1452 Alide2_1452 1537234 1538526 - squalene-associated FAD-dependent desaturase KEGG: ajs:Ajs_1201 amine oxidase~TIGRFAM: Squalene-associated FAD-dependent desaturase~PFAM: Amine oxidase gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1452 Alide2_1453 Alide2_1453 Alide2_1453 1538709 1540343 + methyl-accepting chemotaxis sensory transducer KEGG: rfr:Rfer_3023 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1453 Alide2_1454 Alide2_1454 Alide2_1454 1540375 1541214 - squalene synthase HpnD TIGRFAM: Squalene/phytoene synthase HpnD~KEGG: dia:Dtpsy_1121 squalene synthase HpnD~PFAM: Squalene/phytoene synthase gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1454 Alide2_1455 Alide2_1455 Alide2_1455 1541328 1542206 - squalene synthase HpnC KEGG: dia:Dtpsy_1124 squalene synthase HpnC~TIGRFAM: Squalene synthase HpnC~PFAM: Squalene/phytoene synthase gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1455 Alide2_1456 Alide2_1456 Alide2_1456 1542299 1543570 + efflux transporter%2C RND family%2C MFP subunit KEGG: dia:Dtpsy_1125 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1456 Alide2_1457 Alide2_1457 Alide2_1457 1543580 1546699 + acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: ajs:Ajs_1207 acriflavin resistance protein gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1457 Alide2_1458 Alide2_1458 Alide2_1458 1546924 1548234 + Trigger factor TIGRFAM: Trigger factor~HAMAP: Trigger factor~KEGG: dia:Dtpsy_1127 trigger factor~PFAM: Trigger factor%2C ribosome-binding%2C bacterial%3B Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%3B Trigger factor%2C C-terminal%2C bacterial gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1458 Alide2_1459 Alide2_1459 Alide2_1459 1548359 1548967 + ATP-dependent Clp protease%2C proteolytic subunit ClpP TIGRFAM: Peptidase S14%2C ClpP~KEGG: dia:Dtpsy_1128 ATP-dependent Clp protease proteolytic subunit~PFAM: Peptidase S14%2C ClpP gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1459 Alide2_1460 Alide2_1460 Alide2_1460 1549067 1550332 + ATP-dependent Clp protease%2C ATP-binding subunit ClpX TIGRFAM: Clp protease%2C ATP-binding subunit ClpX~PFAM: ATPase%2C AAA-2%3B Clp ATPase%2C C-terminal%3B Zinc finger%2C C4-type~KEGG: dia:Dtpsy_1129 ATP-dependent protease ATP-binding subunit ClpX~SMART: ATPase%2C AAA+ type%2C core gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1460 Alide2_1461 Alide2_1461 Alide2_1461 1550471 1552891 + anti-sigma H sporulation factor%2C LonB SMART: Peptidase S16%2C lon N-terminal%3B ATPase%2C AAA+ type%2C core~TIGRFAM: Peptidase S16%2C ATP-dependent protease La~KEGG: dia:Dtpsy_1130 ATP-dependent protease La~PFAM: Peptidase S16%2C Lon C-terminal%3B Peptidase S16%2C lon N-terminal%3B ATPase%2C AAA-type%2C core gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1461 Alide2_1462 Alide2_1462 Alide2_1462 1553362 1553979 + transcriptional regulator%2C TetR family PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: dac:Daci_4464 TetR family transcriptional regulator gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1462 Alide2_1463 Alide2_1463 Alide2_1463 1554184 1555068 + Citryl-CoA lyase KEGG: bbr:BB0589 hypothetical protein~PFAM: Aldehyde-lyase domain gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1463 Alide2_1464 Alide2_1464 Alide2_1464 1555096 1555557 + MaoC domain protein dehydratase PFAM: MaoC-like dehydratase~KEGG: bur:Bcep18194_C7289 MaoC-like dehydratase gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1464 Alide2_1465 Alide2_1465 Alide2_1465 1555569 1556735 + Butyryl-CoA dehydrogenase KEGG: bur:Bcep18194_C7290 acyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1465 Alide2_1466 Alide2_1466 Alide2_1466 1556812 1558056 + Formyl-CoA transferase KEGG: bur:Bcep18194_B2644 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1466 Alide2_1467 Alide2_1467 Alide2_1467 1558058 1559218 + Alpha-methylacyl-CoA racemase KEGG: bbr:BB0593 CaiB/BaiF family protein~PFAM: CoA-transferase family III gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1467 Alide2_1468 Alide2_1468 Alide2_1468 1559231 1560196 + hypothetical protein KEGG: bbr:BB0594 hypothetical protein gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1468 Alide2_1469 Alide2_1469 Alide2_1469 1560193 1560615 + hypothetical protein KEGG: bbr:BB0595 hypothetical protein gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1469 Alide2_1470 Alide2_1470 Alide2_1470 1560619 1561302 + nitroreductase PFAM: Nitroreductase-like~KEGG: bbr:BB0596 nitroreductase family protein gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1470 Alide2_1471 Alide2_1471 Alide2_1471 1561307 1562077 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: bbr:BB0597 enoyl-CoA hydratase/isomerase family protein gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1471 Alide2_1472 Alide2_1472 Alide2_1472 1562272 1563444 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: bbr:BB0598 extracellular ligand binding protein gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1472 Alide2_1473 Alide2_1473 Alide2_1473 1563454 1564329 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: bbr:BB0599 putative branched-chain amino acid transport system permease protein gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1473 Alide2_1474 Alide2_1474 Alide2_1474 1564322 1565239 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: bbr:BB0600 putative branched-chain amino acid transport system permease protein gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1474 Alide2_1475 Alide2_1475 Alide2_1475 1565242 1565991 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: bbr:BB0601 ABC transport system ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1475 Alide2_1476 Alide2_1476 Alide2_1476 1565981 1566700 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: bbr:BB0602 ABC transport system ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1476 Alide2_1477 Alide2_1477 Alide2_1477 1566715 1568685 - Trimethylamine dehydrogenase KEGG: bbr:BB0603 NADH:flavin oxidoreductase / NADH oxidase family protein~PFAM: NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal%3B Alanine dehydrogenase/PNT%2C C-terminal gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1477 Alide2_1478 Alide2_1478 Alide2_1478 1568682 1569464 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: bbr:BB0604 short chain dehydrogenase gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1478 Alide2_1479 Alide2_1479 Alide2_1479 1569629 1571050 - MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: bur:Bcep18194_B2639 hypothetical protein gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1479 Alide2_1480 Alide2_1480 Alide2_1480 1571140 1572096 + transcriptional regulator%2C LysR family PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~KEGG: bur:Bcep18194_B2640 LysR family transcriptional regulator gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1480 Alide2_1481 Alide2_1481 Alide2_1481 1572263 1573231 + hypothetical protein KEGG: bbr:BB0605 hypothetical protein gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1481 Alide2_1482 Alide2_1482 Alide2_1482 1573234 1573329 + pseudogene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1482 Alide2_1483 Alide2_1483 Alide2_1483 1573392 1574549 - Alpha-methylacyl-CoA racemase KEGG: bur:Bcep18194_C7493 alpha-methylacyl-CoA racemase~PFAM: CoA-transferase family III gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1483 Alide2_1484 Alide2_1484 Alide2_1484 1574595 1575071 - hypothetical protein gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1484 Alide2_1485 Alide2_1485 Alide2_1485 1575398 1575556 - hypothetical protein gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1485 Alide2_1486 Alide2_1486 Alide2_1486 1575581 1576738 - Formyl-CoA transferase KEGG: reu:Reut_A1830 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1486 Alide2_1487 Alide2_1487 Alide2_1487 1576786 1578018 - Formyl-CoA transferase KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1487 Alide2_1488 Alide2_1488 Alide2_1488 1578024 1579031 - hypothetical protein KEGG: reu:Reut_A1831 hypothetical protein gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1488 Alide2_1489 Alide2_1489 Alide2_1489 1579149 1580330 - Propanoyl-CoA C-acyltransferase KEGG: eba:ebA306 lipid-transfer protein~PFAM: Beta-ketoacyl synthase%2C C-terminal gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1489 Alide2_1490 Alide2_1490 Alide2_1490 1580343 1580684 - hypothetical protein KEGG: bbt:BBta_2933 hypothetical protein gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1490 Alide2_1491 Alide2_1491 Alide2_1491 1580686 1582044 - protein of unknown function DUF1446 PFAM: Protein of unknown function DUF1446~KEGG: sth:STH1574 hypothetical protein gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1491 Alide2_1492 Alide2_1492 Alide2_1492 1582050 1582550 - MaoC domain protein dehydratase PFAM: MaoC-like dehydratase~KEGG: reu:Reut_A1834 MaoC-like dehydratase gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1492 Alide2_1493 Alide2_1493 Alide2_1493 1582565 1583707 - Butyryl-CoA dehydrogenase KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase%2C C-terminal:acyl-CoA dehydrogenase%2C central region:acyl-CoA dehydrogenase%2C N-terminal~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1493 Alide2_1494 Alide2_1494 Alide2_1494 1583853 1583966 - hypothetical protein gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1494 Alide2_1495 Alide2_1495 Alide2_1495 1584236 1585042 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: bur:Bcep18194_C7276 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1495 Alide2_1496 Alide2_1496 Alide2_1496 1585084 1585899 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: pol:Bpro_5272 short chain enoyl-CoA hydratase gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1496 Alide2_1497 Alide2_1497 Alide2_1497 1585961 1586974 + hypothetical protein KEGG: reu:Reut_A1831 hypothetical protein gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1497 Alide2_1498 Alide2_1498 Alide2_1498 1586980 1588197 + Formyl-CoA transferase KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1498 Alide2_1499 Alide2_1499 Alide2_1499 1588198 1589127 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: bur:Bcep18194_C7486 LysR family transcriptional regulator gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1499 Alide2_1500 Alide2_1500 Alide2_1500 1589158 1590633 - pseudogene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1500 Alide2_1501 Alide2_1501 Alide2_1501 1590659 1592278 - Choline dehydrogenase KEGG: bur:Bcep18194_C7484 glucose-methanol-choline oxidoreductase~PFAM: Glucose-methanol-choline oxidoreductase%2C N-terminal%3B Glucose-methanol-choline oxidoreductase%2C C-terminal gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1501 Alide2_1502 Alide2_1502 Alide2_1502 1592518 1593465 + hypothetical protein KEGG: vei:Veis_2943 hypothetical protein gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1502 Alide2_1503 Alide2_1503 Alide2_1503 1593538 1594158 + hypothetical protein KEGG: bur:Bcep18194_C6760 hypothetical protein gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1503 Alide2_1504 Alide2_1504 Alide2_1504 1594155 1595594 + MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: bur:Bcep18194_C6759 MmgE/PrpD gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1504 Alide2_1505 Alide2_1505 Alide2_1505 1595639 1596433 - transcriptional regulator%2C IclR family KEGG: bbr:BB0608 IclR family regulatory protein~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1505 Alide2_1506 Alide2_1506 Alide2_1506 1596430 1597263 - transcriptional regulator%2C IclR family KEGG: bpa:BPP0603 IclR family regulatory protein~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1506 Alide2_1507 Alide2_1507 Alide2_1507 1597376 1598245 + alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: bxe:Bxe_A2766 non-heme peroxidase gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1507 Alide2_1508 Alide2_1508 Alide2_1508 1598285 1599436 - Butyryl-CoA dehydrogenase KEGG: bbr:BB0611 acyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1508 Alide2_1509 Alide2_1509 Alide2_1509 1599672 1600547 + 3-alpha%2C7-alpha%2C12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase KEGG: bpa:BPP0606 putative enoyl-CoA hydratase~PFAM: MaoC-like dehydratase gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1509 Alide2_1510 Alide2_1510 Alide2_1510 1600578 1601327 + 3-oxoacyl-(acyl-carrier-protein) reductase PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: bbr:BB0613 putative short chain dehydrogenase~SMART: Polyketide synthase/Fatty acid synthase%2C KR gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1510 Alide2_1511 Alide2_1511 Alide2_1511 1601408 1602613 + acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: bur:Bcep18194_C7332 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1511 Alide2_1512 Alide2_1512 Alide2_1512 1602627 1604564 + Acetate--CoA ligase KEGG: bbr:BB0615 AMP-binding enzyme~PFAM: AMP-dependent synthetase/ligase gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1512 Alide2_1513 Alide2_1513 Alide2_1513 1604570 1605418 + transcriptional regulator%2C IclR family KEGG: bpa:BPP0610 IclR family regulatory protein~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1513 Alide2_1514 Alide2_1514 Alide2_1514 1605459 1606640 + Formyl-CoA transferase KEGG: bbr:BB0617 CaiB/BaiF family protein~PFAM: CoA-transferase family III gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1514 Alide2_1515 Alide2_1515 Alide2_1515 1606652 1608082 + MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: bur:Bcep18194_C7308 MmgE/PrpD gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1515 Alide2_1516 Alide2_1516 Alide2_1516 1608079 1609008 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: bur:Bcep18194_C7296 LysR family transcriptional regulator gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1516 Alide2_1517 Alide2_1517 Alide2_1517 1609118 1610284 + Isovaleryl-CoA dehydrogenase KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1517 Alide2_1518 Alide2_1518 Alide2_1518 1610307 1611056 + Electron transfer flavoprotein alpha/beta-subunit KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit~PFAM: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1518 Alide2_1519 Alide2_1519 Alide2_1519 1611057 1612001 + Electron transfer flavoprotein alpha subunit KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit~PFAM: Electron transfer flavoprotein%2C alpha subunit%2C C-terminal%3B Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1519 Alide2_1520 Alide2_1520 Alide2_1520 1612090 1612938 + hypothetical protein KEGG: bbr:BB0622 hypothetical protein gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1520 Alide2_1521 Alide2_1521 Alide2_1521 1612951 1614150 + Formyl-CoA transferase KEGG: bur:Bcep18194_C7301 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1521 Alide2_1522 Alide2_1522 Alide2_1522 1614153 1614998 + HpcH/HpaI aldolase PFAM: Aldehyde-lyase domain~KEGG: bur:Bcep18194_C7302 HpcH/HpaI aldolase gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1522 Alide2_1523 Alide2_1523 Alide2_1523 1615059 1616778 + pseudogene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1523 Alide2_1524 Alide2_1524 Alide2_1524 1616889 1617635 - ABC transporter related protein KEGG: jan:Jann_2264 ABC transporter related~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1524 Alide2_1525 Alide2_1525 Alide2_1525 1617800 1618564 - Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: jan:Jann_2265 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1525 Alide2_1526 Alide2_1526 Alide2_1526 1618561 1619454 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: jan:Jann_2266 inner-membrane translocator gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1526 Alide2_1527 Alide2_1527 Alide2_1527 1619459 1620352 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: jan:Jann_2267 inner-membrane translocator gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1527 Alide2_1528 Alide2_1528 Alide2_1528 1620431 1621564 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: jan:Jann_2263 extracellular ligand-binding receptor gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1528 Alide2_1529 Alide2_1529 Alide2_1529 1621651 1622721 - L-iditol 2-dehydrogenase KEGG: bur:Bcep18194_C7304 zinc-containing alcohol dehydrogenase superfamily protein~PFAM: Alcohol dehydrogenase%2C C-terminal%3B Alcohol dehydrogenase GroES-like gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1529 Alide2_1530 Alide2_1530 Alide2_1530 1622739 1624226 - Aldehyde Dehydrogenase PFAM: Aldehyde dehydrogenase domain~KEGG: bur:Bcep18194_C6756 aldehyde dehydrogenase (acceptor) gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1530 Alide2_1531 Alide2_1531 Alide2_1531 1624234 1624443 - hypothetical protein gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1531 Alide2_1532 Alide2_1532 Alide2_1532 1624626 1625597 - hypothetical protein KEGG: bbr:BB0625 hypothetical protein gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1532 Alide2_1533 Alide2_1533 Alide2_1533 1625621 1627027 - MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: bpa:BPP0622 hypothetical protein gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1533 Alide2_1534 Alide2_1534 Alide2_1534 1627098 1628576 - Betaine-aldehyde dehydrogenase KEGG: bur:Bcep18194_C7305 aldehyde dehydrogenase (acceptor)~PFAM: Aldehyde dehydrogenase domain gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1534 Alide2_1535 Alide2_1535 Alide2_1535 1628665 1630158 - Betaine-aldehyde dehydrogenase KEGG: bur:Bcep18194_C7306 aldehyde dehydrogenase (acceptor)~PFAM: Aldehyde dehydrogenase domain gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1535 Alide2_1536 Alide2_1536 Alide2_1536 1630254 1631063 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: bbr:BB0629 enoyl-CoA hydratase gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1536 Alide2_1537 Alide2_1537 Alide2_1537 1631170 1631655 - protein of unknown function DUF894 DitE PFAM: Major facilitator superfamily%2C enterobactin exporter EntS~KEGG: aav:Aave_4649 protein of unknown function DUF894%2C DitE gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1537 Alide2_1538 Alide2_1538 Alide2_1538 1631697 1632752 - porin Gram-negative type PFAM: Porin%2C Gram-negative type~KEGG: bcm:Bcenmc03_6621 porin gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1538 Alide2_1539 Alide2_1539 Alide2_1539 1632817 1633785 - hypothetical protein KEGG: reu:Reut_B3884 hypothetical protein gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1539 Alide2_1540 Alide2_1540 Alide2_1540 1634384 1635247 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dac:Daci_0260 inner-membrane translocator gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1540 Alide2_1541 Alide2_1541 Alide2_1541 1635248 1636222 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dac:Daci_0261 inner-membrane translocator gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1541 Alide2_1542 Alide2_1542 Alide2_1542 1636209 1636973 + Sulfate-transporting ATPase PFAM: ABC transporter-like~KEGG: dac:Daci_0262 ABC transporter-like protein~SMART: ATPase%2C AAA+ type%2C core gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1542 Alide2_1543 Alide2_1543 Alide2_1543 1636960 1637667 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: dac:Daci_0263 ABC transporter-like protein~SMART: ATPase%2C AAA+ type%2C core gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1543 Alide2_1544 Alide2_1544 Alide2_1544 1637712 1638878 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dac:Daci_0264 extracellular ligand-binding receptor gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1544 Alide2_1545 Alide2_1545 Alide2_1545 1639019 1640719 - Long-chain-fatty-acid--CoA ligase KEGG: tin:Tint_1587 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1545 Alide2_1546 Alide2_1546 Alide2_1546 1640729 1641955 - Isovaleryl-CoA dehydrogenase KEGG: tin:Tint_1589 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1546 Alide2_1547 Alide2_1547 Alide2_1547 1641978 1642751 - 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: dac:Daci_0266 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1547 Alide2_1548 Alide2_1548 Alide2_1548 1643004 1643801 - transcriptional regulator%2C IclR family KEGG: reh:H16_A2948 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1548 Alide2_1549 Alide2_1549 Alide2_1549 1643883 1644155 + histone family protein nucleoid-structuring protein H-NS PFAM: Histone-like nucleoid-structuring protein H-NS~KEGG: ctt:CtCNB1_0646 histone-like nucleoid-structuring protein H-NS gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1549 Alide2_1550 Alide2_1550 Alide2_1550 1644171 1645400 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: azo:azo3693 hypothetical protein gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1550 Alide2_1551 Alide2_1551 Alide2_1551 1646379 1647326 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: pol:Bpro_0754 integrase catalytic subunit gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1551 Alide2_1552 Alide2_1552 Alide2_1552 1647481 1649358 - hypothetical protein manually curated~KEGG: bxe:Bxe_A1801 hypothetical protein gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1552 Alide2_1553 Alide2_1553 Alide2_1553 1649355 1653014 - pseudogene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1553 Alide2_1554 Alide2_1554 Alide2_1554 1651396 1651719 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1554 Alide2_1555 Alide2_1555 Alide2_1555 1651716 1652631 + pseudogene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1555 Alide2_1556 Alide2_1556 Alide2_1556 1653251 1654213 - transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: bmj:BMULJ_05861 ISBmu20 transposase gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1556 Alide2_1557 Alide2_1557 Alide2_1557 1654411 1655379 - transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: axy:AXYL_01136 transposase%2C IS4 family protein 1 gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1557 Alide2_1558 Alide2_1558 Alide2_1558 1655450 1655549 + pseudogene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1558 Alide2_1559 Alide2_1559 Alide2_1559 1655594 1655929 + hypothetical protein gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1559 Alide2_1560 Alide2_1560 Alide2_1560 1655898 1656842 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: xop:PXO_02075 IS1112 transposase gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1560 Alide2_1561 Alide2_1561 Alide2_1561 1656957 1657175 + pseudogene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1561 Alide2_1562 Alide2_1562 Alide2_1562 1657385 1657603 - Protein of unknown function DUF2274 PFAM: Protein of unknown function DUF2274~KEGG: pap:PSPA7_3696 conjugal transfer protein gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1562 Alide2_1563 Alide2_1563 Alide2_1563 1657600 1658886 - conjugation TrbI family protein PFAM: Type IV secretion system%2C VirB10 / TraB / TrbI~KEGG: pap:PSPA7_3697 conjugation TrbI family protein gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1563 Alide2_1564 Alide2_1564 Alide2_1564 1658889 1659872 - P-type conjugative transfer protein TrbG KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX~TIGRFAM: P-type conjugative transfer protein TrbG~PFAM: Conjugal transfer%2C TrbG/VirB9/CagX gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1564 Alide2_1565 Alide2_1565 Alide2_1565 1659869 1660573 - conjugal transfer protein TrbF KEGG: pap:PSPA7_3699 conjugal transfer protein TrbF gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1565 Alide2_1566 Alide2_1566 Alide2_1566 1660586 1661971 - P-type conjugative transfer protein TrbL KEGG: tgr:Tgr7_1901 conjugal transfer protein TrbL~TIGRFAM: Conjugal transfer%2C TrbL~PFAM: Conjugal transfer%2C TrbL/VirB6 gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1566 Alide2_1567 Alide2_1567 Alide2_1567 1661968 1662288 - putative lipoprotein KEGG: pap:PSPA7_3701 putative lipoprotein gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1567 Alide2_1568 Alide2_1568 Alide2_1568 1662301 1663026 - P-type conjugative transfer protein TrbJ TIGRFAM: P-type conjugative transfer protein TrbJ~KEGG: pap:PSPA7_3702 conjugal transfer protein TrbJ gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1568 Alide2_1569 Alide2_1569 Alide2_1569 1663023 1665476 - CagE%2C TrbE%2C VirB component of type IV transporter system%2C conserved region KEGG: pap:PSPA7_3703 conjugal transfer ATPase TrbE~PFAM: CagE%2C TrbE%2C VirB component of type IV transporter system%2C central domain~SMART: ATPase%2C AAA+ type%2C core gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1569 Alide2_1570 Alide2_1570 Alide2_1570 1665492 1665764 - conjugal transfer protein KEGG: pap:PSPA7_3704 conjugal transfer protein gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1570 Alide2_1571 Alide2_1571 Alide2_1571 1665761 1666144 - Conjugal transfer protein TrbC PFAM: Conjugal transfer%2CTrbC~KEGG: rme:Rmet_1551 conjugal transfer protein TrbC gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1571 Alide2_1572 Alide2_1572 Alide2_1572 1666141 1667193 - P-type conjugative transfer ATPase TrbB KEGG: pap:PSPA7_3706 P-type conjugative transfer ATPase TrbB~TIGRFAM: ATPase%2C P-type conjugative transfer%2C TrbB~PFAM: Type II secretion system protein E gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1572 Alide2_1573 Alide2_1573 Alide2_1573 1667190 1667654 - CopG-like domain-containing protein DNA-binding protein PFAM: CopG-like DNA-binding~KEGG: dac:Daci_0439 CopG/DNA-binding domain-containing protein gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1573 Alide2_1574 Alide2_1574 Alide2_1574 1667651 1669651 - TRAG family protein PFAM: Ti-type conjugative transfer system%2C TraG-like~KEGG: pau:PA14_30960 conjugal transfer coupling protein TraG gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1574 Alide2_1575 Alide2_1575 Alide2_1575 1669887 1670165 - putative lipoprotein KEGG: pap:PSPA7_3722 putative lipoprotein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1575 Alide2_1576 Alide2_1576 Alide2_1576 1670162 1671106 - transcriptional regulator%2C LysR family KEGG: bpt:Bpet2202 LysR family transcriptional regulator~manually curated~PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1576 Alide2_1577 Alide2_1577 Alide2_1577 1671209 1672462 - monooxygenase FAD-binding protein PFAM: Monooxygenase%2C FAD-binding~KEGG: ami:Amir_4339 monooxygenase FAD-binding gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1577 Alide2_1578 Alide2_1578 Alide2_1578 1672473 1673990 - RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: bbr:BB2379 outer membrane efflux protein~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1578 Alide2_1579 Alide2_1579 Alide2_1579 1674003 1675118 - ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: abc:ACICU_01702 ABC-type multidrug transport system%2C permease component gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1579 Alide2_1580 Alide2_1580 Alide2_1580 1675124 1676266 - ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: bpa:BPP1316 hypothetical protein gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1580 Alide2_1581 Alide2_1581 Alide2_1581 1676263 1678041 - Sulfate-transporting ATPase%2C Polyamine-transporting ATPase PFAM: ABC transporter-like~KEGG: pag:PLES_25911 ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1581 Alide2_1582 Alide2_1582 Alide2_1582 1678038 1679036 - secretion protein HlyD family protein PFAM: Secretion protein HlyD~KEGG: bbr:BB2383 HlyD family secretion protein gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1582 Alide2_1583 Alide2_1583 Alide2_1583 1679163 1679855 + Transcriptional regulator TetR PFAM: Transcription regulator YbiH%2C C-terminal%3B Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: ppg:PputGB1_3284 TetR family transcriptional regulator gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1583 Alide2_1584 Alide2_1584 Alide2_1584 1679860 1681881 + hypothetical protein KEGG: sml:Smlt1841 hypothetical protein gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1584 Alide2_1585 Alide2_1585 Alide2_1585 1681968 1683965 - hypothetical protein KEGG: pap:PSPA7_3726 hypothetical protein gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1585 Alide2_1586 Alide2_1586 Alide2_1586 1683962 1684417 - hypothetical protein manually curated~KEGG: sml:Smlt1309 hypothetical protein gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1586 Alide2_1587 Alide2_1587 Alide2_1587 1684414 1685001 - Peptidase S26%2C conserved region PFAM: Peptidase S26%2C conserved region~KEGG: rme:Rmet_1258 TraF peptidase gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1587 Alide2_1588 Alide2_1588 Alide2_1588 1684998 1685543 - hypothetical protein KEGG: rme:Rmet_1257 hypothetical protein gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1588 Alide2_1589 Alide2_1589 Alide2_1589 1685540 1685824 - hypothetical protein KEGG: bpt:Bpet2187 hypothetical protein gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1589 Alide2_1590 Alide2_1590 Alide2_1590 1685821 1686459 - Cobyrinic acid ac-diamide synthase KEGG: rme:Rmet_1255 cobyrinic acid a%2Cc-diamide synthase~manually curated~PFAM: Cobyrinic acid a%2Cc-diamide synthase gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1590 Alide2_1591 Alide2_1591 Alide2_1591 1686713 1687570 - Replication initiator protein A PFAM: Replication initiator protein A~KEGG: dia:Dtpsy_3526 putative replication initiator and transcription repressor protein gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1591 Alide2_1592 Alide2_1592 Alide2_1592 1687597 1687878 - hypothetical protein KEGG: ajs:Ajs_2652 hypothetical protein gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1592 Alide2_1593 Alide2_1593 Alide2_1593 1687963 1688736 - Protein of unknown function DUF2285 PFAM: Protein of unknown function DUF2285~KEGG: dac:Daci_0459 hypothetical protein gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1593 Alide2_1594 Alide2_1594 Alide2_1594 1689046 1689549 - hypothetical protein manually curated~KEGG: rme:Rmet_1250 hypothetical protein gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1594 Alide2_1595 Alide2_1595 Alide2_1595 1689637 1689942 + helix-turn-helix domain protein KEGG: rme:Rmet_1249 XRE family transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1595 Alide2_1596 Alide2_1596 Alide2_1596 1690006 1690359 - protein of unknown function DUF736 KEGG: ajs:Ajs_2644 hypothetical protein~manually curated~PFAM: Protein of unknown function DUF736 gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1596 Alide2_1597 Alide2_1597 Alide2_1597 1691106 1691435 + regulatory protein ArsR SMART: HTH transcriptional regulator%2C ArsR~KEGG: bpt:Bpet1026 ArsR family transcriptional regulator gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1597 Alide2_1598 Alide2_1598 Alide2_1598 1691449 1691919 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: dac:Daci_0488 glyoxalase/bleomycin resistance protein/dioxygenase gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1598 Alide2_1599 Alide2_1599 Alide2_1599 1691932 1692429 + protein tyrosine phosphatase KEGG: bpt:Bpet1024 hypothetical protein~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~SMART: Protein-tyrosine phosphatase%2C low molecular weight gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1599 Alide2_1600 Alide2_1600 Alide2_1600 1692440 1693525 + arsenical-resistance protein KEGG: dac:Daci_0490 arsenical-resistance protein~TIGRFAM: Arsenical-resistance protein ACR3~PFAM: Bile acid:sodium symporter gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1600 Alide2_1601 Alide2_1601 Alide2_1601 1693543 1693965 + arsenate reductase TIGRFAM: Arsenate reductase~KEGG: rpf:Rpic12D_0647 arsenate reductase~PFAM: Arsenate reductase-like gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1601 Alide2_1602 Alide2_1602 Alide2_1602 1694064 1694366 + transcriptional regulator%2C PadR-like family PFAM: Transcription regulator PadR N-terminal-like~KEGG: oan:Oant_4665 PadR-like family transcriptional regulator gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1602 Alide2_1603 Alide2_1603 Alide2_1603 1694363 1695592 + chromate transporter%2C chromate ion transporter (CHR) family KEGG: bav:BAV1573 chromate transporter~TIGRFAM: Chromate transporter%2C long chain~PFAM: Chromate transporter gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1603 Alide2_1604 Alide2_1604 Alide2_1604 1695598 1696128 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase (GNAT) domain~KEGG: rme:Rmet_1246 GCN5-related N-acetyltransferase gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1604 Alide2_1605 Alide2_1605 Alide2_1605 1696336 1698387 - ParB domain protein nuclease KEGG: rme:Rmet_1245 ParB family protein~PFAM: ParB-like nuclease~SMART: ParB-like nuclease gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1605 Alide2_1606 Alide2_1606 Alide2_1606 1698465 1699289 - protein of unknown function DUF932 PFAM: Protein of unknown function DUF932~KEGG: ajs:Ajs_2639 hypothetical protein gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1606 Alide2_1607 Alide2_1607 Alide2_1607 1699816 1700484 + hypothetical protein KEGG: dia:Dtpsy_1275 hypothetical protein gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1607 Alide2_1608 Alide2_1608 Alide2_1608 1700515 1700865 - hypothetical protein KEGG: rme:Rmet_3038 hypothetical protein gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1608 Alide2_1609 Alide2_1609 Alide2_1609 1701147 1701653 - DNA repair protein RadC KEGG: tgr:Tgr7_1867 DNA repair protein RadC~TIGRFAM: Uncharacterised protein family UPF0758~PFAM: Uncharacterised protein family UPF0758 gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1609 Alide2_1610 Alide2_1610 Alide2_1610 1702066 1703208 + hypothetical protein KEGG: ajs:Ajs_2635 hypothetical protein gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1610 Alide2_1611 Alide2_1611 Alide2_1611 1703212 1703799 + hypothetical protein manually curated~KEGG: dia:Dtpsy_1271 hypothetical protein gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1611 Alide2_1612 Alide2_1612 Alide2_1612 1703841 1704326 + Domain of unknown function DUF1863 PFAM: MTH538 TIR-like domain~KEGG: ajs:Ajs_2632 hypothetical protein gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1612 Alide2_1613 Alide2_1613 Alide2_1613 1704343 1705005 - Uracil-DNA glycosylase superfamily PFAM: Uracil-DNA glycosylase-like~KEGG: ajs:Ajs_2631 hypothetical protein gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1613 Alide2_1614 Alide2_1614 Alide2_1614 1705002 1706138 - hypothetical protein KEGG: ajs:Ajs_2630 hypothetical protein gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1614 Alide2_1615 Alide2_1615 Alide2_1615 1706142 1706768 - hypothetical protein manually curated~KEGG: ajs:Ajs_2629 hypothetical protein gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1615 Alide2_1616 Alide2_1616 Alide2_1616 1706768 1707235 - Domain of unknown function DUF1863 PFAM: MTH538 TIR-like domain~KEGG: ajs:Ajs_2628 hypothetical protein gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1616 Alide2_1617 Alide2_1617 Alide2_1617 1707324 1707626 - transcriptional regulator%2C XRE family KEGG: ajs:Ajs_2627 transcriptional regulator gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1617 Alide2_1618 Alide2_1618 Alide2_1618 1707610 1707993 - hypothetical protein KEGG: ajs:Ajs_2626 hypothetical protein gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1618 Alide2_1619 Alide2_1619 Alide2_1619 1708133 1709335 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ajs:Ajs_2625 phage integrase family protein gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1619 Alide2_1620 Alide2_1620 Alide2_1620 1709584 1710213 + hypothetical protein KEGG: ajs:Ajs_2624 hypothetical protein gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1620 Alide2_1621 Alide2_1621 Alide2_1621 1710338 1712296 + excinuclease ABC%2C C subunit TIGRFAM: Excinuclease ABC%2C C subunit~PFAM: Excinuclease ABC%2C C subunit%2C C-terminal%3B Excinuclease ABC%2C C subunit%2C N-terminal%3B UvrB/UvrC protein~KEGG: dia:Dtpsy_1185 excinuclease ABC subunit C~SMART: Excinuclease ABC%2C C subunit%2C N-terminal%3B Helix-hairpin-helix DNA-binding motif%2C class 1 gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1621 Alide2_1622 Alide2_1622 Alide2_1622 1712326 1712913 + CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~KEGG: dia:Dtpsy_1186 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1622 Alide2_1623 Alide2_1623 Alide2_1623 1713258 1713530 + histone family protein DNA-binding protein KEGG: dia:Dtpsy_1187 histone family protein DNA-binding protein~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1623 Alide2_1624 Alide2_1624 Alide2_1624 1713680 1715602 + PpiC-type peptidyl-prolyl cis-trans isomerase PFAM: Peptidyl-prolyl cis-trans isomerase%2C PpiC-type~KEGG: dia:Dtpsy_1188 PpiC-type peptidyl-prolyl cis-trans isomerase gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1624 Alide2_1625 Alide2_1625 Alide2_1625 1715960 1717180 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: mno:Mnod_4450 extracellular ligand-binding receptor gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1625 Alide2_1626 Alide2_1626 Alide2_1626 1717307 1718092 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: mlo:mll1009 enoyl-CoA hydratase gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1626 Alide2_1627 Alide2_1627 Alide2_1627 1718192 1719553 + Phenylacetate--CoA ligase KEGG: rxy:Rxyl_1851 phenylacetate-CoA ligase gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1627 Alide2_1628 Alide2_1628 Alide2_1628 1719573 1721153 + Methylcrotonoyl-CoA carboxylase KEGG: pol:Bpro_5271 carboxyl transferase~PFAM: Carboxyl transferase gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1628 Alide2_1629 Alide2_1629 Alide2_1629 1721162 1723168 + Methylcrotonoyl-CoA carboxylase PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal%3B Biotin carboxylase%2C C-terminal%3B Biotin/lipoyl attachment~KEGG: pol:Bpro_5270 carbamoyl-phosphate synthase L chain%2C ATP-binding~SMART: Biotin carboxylase%2C C-terminal gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1629 Alide2_1630 Alide2_1630 Alide2_1630 1723184 1724143 + Hydroxymethylglutaryl-CoA lyase KEGG: pol:Bpro_5269 hydroxymethylglutaryl-CoA lyase~PFAM: Pyruvate carboxyltransferase gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1630 Alide2_1631 Alide2_1631 Alide2_1631 1724194 1725723 + o-succinylbenzoate--CoA ligase KEGG: rlt:Rleg2_6334 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1631 Alide2_1632 Alide2_1632 Alide2_1632 1725773 1726366 - Tetracycline transcriptional regulator YsiA domain-containing protein PFAM: Transcription regulator YsiA%2C C-terminal~KEGG: azc:AZC_4590 transcriptional regulator gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1632 Alide2_1633 Alide2_1633 Alide2_1633 1726509 1727345 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1633 Alide2_1634 Alide2_1634 Alide2_1634 1727347 1727490 - pseudogene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1634 Alide2_1635 Alide2_1635 Alide2_1635 1727720 1728625 + cysteine synthase TIGRFAM: Cysteine synthase K/M%3B Cysteine synthase B~KEGG: dia:Dtpsy_2386 cysteine synthase B~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1635 Alide2_1636 Alide2_1636 Alide2_1636 1728631 1729194 + NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: dia:Dtpsy_2385 NUDIX hydrolase gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1636 Alide2_1637 Alide2_1637 Alide2_1637 1729200 1729427 + SirA-like domain-containing protein PFAM: SirA-like~KEGG: dia:Dtpsy_2384 SirA family protein gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1637 Alide2_1638 Alide2_1638 Alide2_1638 1729518 1730402 - UTP-glucose-1-phosphate uridylyltransferase TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase%2C bacterial/archaeal type~KEGG: dia:Dtpsy_2383 UTP-glucose-1-phosphate uridylyltransferase~PFAM: Nucleotidyl transferase gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1638 Alide2_1639 Alide2_1639 Alide2_1639 1730510 1733416 - Valyl-tRNA synthetase TIGRFAM: Valyl-tRNA synthetase~HAMAP: Valyl-tRNA synthetase~KEGG: ajs:Ajs_2896 valyl-tRNA synthetase gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1639 Alide2_1640 Alide2_1640 Alide2_1640 1733544 1734149 - hypothetical protein KEGG: pol:Bpro_1263 hypothetical protein gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1640 Alide2_1641 Alide2_1641 Alide2_1641 1734146 1734781 - electron transport protein SCO1/SenC PFAM: Copper chaperone SCO1/SenC~KEGG: net:Neut_1585 hypothetical protein gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1641 Alide2_1642 Alide2_1642 Alide2_1642 1734789 1735382 - cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: net:Neut_1584 cytochrome c%2C class I gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1642 Alide2_1643 Alide2_1643 Alide2_1643 1735396 1736043 - cytochrome C oxidase mono-heme subunit/FixO PFAM: Cytochrome c oxidase%2C monohaem subunit/FixO~KEGG: net:Neut_1583 cytochrome c oxidase%2C mono-heme subunit/FixO gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1643 Alide2_1644 Alide2_1644 Alide2_1644 1736033 1737688 - Cytochrome-c oxidase KEGG: net:Neut_1582 cytochrome c oxidase%2C subunit I~PFAM: Cytochrome c oxidase%2C subunit I gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1644 Alide2_1645 Alide2_1645 Alide2_1645 1737942 1739231 - HemY domain protein PFAM: HemY%2C N-terminal~KEGG: ajs:Ajs_2893 HemY domain-containing protein gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1645 Alide2_1646 Alide2_1646 Alide2_1646 1739257 1740336 - hemX domain protein PFAM: HemX~KEGG: ajs:Ajs_2892 protein of unknown function DUF513%2C HemX gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1646 Alide2_1647 Alide2_1647 Alide2_1647 1740326 1741150 - uroporphyrinogen-III synthase KEGG: ajs:Ajs_2891 uroporphyrinogen-III synthase gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1647 Alide2_1648 Alide2_1648 Alide2_1648 1741144 1742073 - Porphobilinogen deaminase PFAM: Porphobilinogen deaminase%2C N-terminal%3B Porphobilinogen deaminase%2C C-terminal domain~TIGRFAM: Tetrapyrrole biosynthesis%2C hydroxymethylbilane synthase~HAMAP: Tetrapyrrole biosynthesis%2C hydroxymethylbilane synthase~KEGG: dia:Dtpsy_2377 porphobilinogen deaminase gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1648 Alide2_1649 Alide2_1649 Alide2_1649 1742193 1745036 + Phosphoenolpyruvate carboxylase KEGG: dia:Dtpsy_2376 phosphoenolpyruvate carboxylase~PFAM: Phosphoenolpyruvate carboxylase gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1649 Alide2_1650 Alide2_1650 Alide2_1650 1745069 1745608 - flagellar transcriptional activator FlhC PFAM: Flagellar transcriptional activator FlhC~KEGG: ajs:Ajs_2885 transcriptional activator FlhC gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1650 Alide2_1651 Alide2_1651 Alide2_1651 1745645 1745974 - flagellar transcriptional activator PFAM: Flagellar transcriptional activator~KEGG: ajs:Ajs_2884 flagellar transcriptional activator%2C FlhD subunit gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1651 Alide2_1652 Alide2_1652 Alide2_1652 1746201 1746677 - bacterioferritin KEGG: dia:Dtpsy_2370 bacterioferritin~TIGRFAM: Bacterioferritin~PFAM: Ferritin/Dps protein gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1652 Alide2_1653 Alide2_1653 Alide2_1653 1746893 1747468 + peroxiredoxin TIGRFAM: Peroxiredoxin~KEGG: xtr:100496295 alkyl hydroperoxide reductase subunit C-like~PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant%3B Peroxiredoxin%2C C-terminal gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1653 Alide2_1654 Alide2_1654 Alide2_1654 1747564 1749132 + alkyl hydroperoxide reductase%2C F subunit TIGRFAM: Alkyl hydroperoxide reductase%2C subunit F~KEGG: xtr:100496451 alkyl hydroperoxide reductase subunit F-like~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Glutaredoxin gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1654 Alide2_1655 Alide2_1655 Alide2_1655 1749201 1750658 + Catalase KEGG: gpb:HDN1F_12050 catalase~PFAM: Catalase-related subgroup%3B Catalase-related immune responsive gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1655 Alide2_1656 Alide2_1656 Alide2_1656 1750714 1751091 + hypothetical protein KEGG: mpt:Mpe_A2670 hypothetical protein gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1656 Alide2_1657 Alide2_1657 Alide2_1657 1751273 1752541 + outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: ajs:Ajs_1332 outer membrane efflux protein gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1657 Alide2_1658 Alide2_1658 Alide2_1658 1752649 1753194 + hypothetical protein KEGG: dia:Dtpsy_1144 hypothetical protein gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1658 Alide2_1659 Alide2_1659 Alide2_1659 1753191 1754303 + hypothetical protein KEGG: xtr:100489290 hypothetical protein LOC100489290 gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1659 Alide2_1660 Alide2_1660 Alide2_1660 1754317 1757436 + heavy metal efflux pump%2C CzcA family KEGG: tmz:Tmz1t_2382 heavy metal efflux pump%2C CzcA family~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1660 Alide2_1661 Alide2_1661 Alide2_1661 1757470 1758357 - phosphotransferase ydiA KEGG: aav:Aave_1381 hypothetical protein~HAMAP: Protein of unknown function DUF299%2C phosphotransferase%2C predicted~PFAM: Protein of unknown function DUF299%2C phosphotransferase%2C predicted gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1661 Alide2_1662 Alide2_1662 Alide2_1662 1758523 1760913 + phosphoenolpyruvate synthase TIGRFAM: Phosphoenolpyruvate synthase~KEGG: dia:Dtpsy_2366 phosphoenolpyruvate synthase~PFAM: Pyruvate phosphate dikinase%2C PEP/pyruvate-binding%3B PEP-utilising enzyme%2C mobile domain%3B PEP-utilising enzyme gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1662 Alide2_1663 Alide2_1663 Alide2_1663 1760930 1761247 + putative solute symporter protein TIGRFAM: Sodium symporter small subunit%2C predicted~KEGG: ajs:Ajs_2878 hypothetical protein gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1663 Alide2_1664 Alide2_1664 Alide2_1664 1761240 1763324 + putative sodium symporter protein KEGG: dia:Dtpsy_2364 calcium-binding EF-hand-containing protein~TIGRFAM: Sodium/solute symporter%2C VC2705 subfamily~PFAM: Sodium/solute symporter gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1664 Alide2_1665 Alide2_1665 Alide2_1665 1763445 1763903 + hypothetical protein KEGG: ajs:Ajs_2876 hypothetical protein gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1665 Alide2_1666 Alide2_1666 Alide2_1666 1763970 1765754 - Butyryl-CoA dehydrogenase KEGG: rpi:Rpic_2638 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1666 Alide2_1667 Alide2_1667 Alide2_1667 1765910 1766938 - transcriptional regulator%2C AraC family KEGG: ppw:PputW619_3351 AraC family transcriptional regulator~PFAM: HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1667 Alide2_1668 Alide2_1668 Alide2_1668 1767282 1768496 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dac:Daci_0182 extracellular ligand-binding receptor gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1668 Alide2_1669 Alide2_1669 Alide2_1669 1768531 1769676 + Long-chain-acyl-CoA dehydrogenase KEGG: rpi:Rpic_2632 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1669 Alide2_1670 Alide2_1670 Alide2_1670 1769673 1770752 + Alpha-methylacyl-CoA racemase KEGG: rpi:Rpic_2631 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1670 Alide2_1671 Alide2_1671 Alide2_1671 1770749 1772422 + o-succinylbenzoate--CoA ligase KEGG: rpi:Rpic_2630 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1671 Alide2_1672 Alide2_1672 Alide2_1672 1772470 1773666 + acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: rpi:Rpic_2629 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1672 Alide2_1673 Alide2_1673 Alide2_1673 1773663 1774439 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: rpi:Rpic_2628 enoyl-CoA hydratase/isomerase gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1673 Alide2_1674 Alide2_1674 Alide2_1674 1774471 1775253 + 3-hydroxy-2-methylbutyryl-CoA dehydrogenase KEGG: rpi:Rpic_2627 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1674 Alide2_1675 Alide2_1675 Alide2_1675 1775420 1776496 - pseudogene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1675 Alide2_1676 Alide2_1676 Alide2_1676 1776637 1777191 - Elongation factor P SMART: Elongation factor P%2C C-terminal~TIGRFAM: Translation elongation factor P~KEGG: xtr:100493038 elongation factor P-like~HAMAP: Translation elongation factor P~PFAM: Elongation factor P%2C C-terminal%3B Translation elongation factor%2C KOW-like%3B Translation elongation factor P/YeiP%2C central gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1676 Alide2_1677 Alide2_1677 Alide2_1677 1777351 1778433 - Uncharacterized conserved protein UCP015557 KEGG: ajs:Ajs_2874 hypothetical protein~TIGRFAM: Uncharacterised conserved protein UCP015557~PFAM: Uncharacterised conserved protein UCP015557 gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1677 Alide2_1678 Alide2_1678 Alide2_1678 1778430 1779332 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_2873 LysR family transcriptional regulator gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1678 Alide2_1679 Alide2_1679 Alide2_1679 1779460 1780665 + Formyl-CoA transferase KEGG: dia:Dtpsy_2359 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1679 Alide2_1680 Alide2_1680 Alide2_1680 1780662 1781633 + Hydroxymethylglutaryl-CoA lyase KEGG: dia:Dtpsy_2358 pyruvate carboxyltransferase~PFAM: Pyruvate carboxyltransferase gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1680 Alide2_1681 Alide2_1681 Alide2_1681 1781676 1782665 + hypothetical protein KEGG: dia:Dtpsy_2357 hypothetical protein gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1681 Alide2_1682 Alide2_1682 Alide2_1682 1782710 1783693 + hypothetical protein KEGG: ajs:Ajs_2869 hypothetical protein gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1682 Alide2_1683 Alide2_1683 Alide2_1683 1783728 1784654 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ctt:CtCNB1_0157 L-carnitine dehydratase/bile acid-inducible gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1683 Alide2_1684 Alide2_1684 Alide2_1684 1784746 1785957 + Formyl-CoA transferase KEGG: xtr:100493857 uncharacterized protein yfdE-like~PFAM: CoA-transferase family III gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1684 Alide2_1685 Alide2_1685 Alide2_1685 1785996 1787153 + Butyryl-CoA dehydrogenase KEGG: xtr:100494035 short-chain specific acyl-CoA dehydrogenase%2C mitochondrial-like~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1685 Alide2_1686 Alide2_1686 Alide2_1686 1787361 1788326 + substrate-binding region of ABC-type glycine betaine transport system KEGG: aav:Aave_2969 substrate-binding region of ABC-type glycine betaine transport system gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1686 Alide2_1687 Alide2_1687 Alide2_1687 1788352 1789191 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: xtr:100494207 probable ABC transporter permease protein BruAb2_1124-like gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1687 Alide2_1688 Alide2_1688 Alide2_1688 1789191 1789973 + Taurine-transporting ATPase PFAM: ABC transporter-like~KEGG: xtr:100494366 uncharacterized ABC transporter ATP-binding protein MJ0412-like~SMART: ATPase%2C AAA+ type%2C core gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1688 Alide2_1689 Alide2_1689 Alide2_1689 1789990 1790772 + transcriptional regulator%2C GntR family with UTRA sensor domain TIGRFAM: Histidine utilization repressor~PFAM: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR~KEGG: aav:Aave_2966 histidine utilization repressor~SMART: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1689 Alide2_1690 Alide2_1690 Alide2_1690 1790836 1792425 + Histidine ammonia-lyase PFAM: Phenylalanine/histidine ammonia-lyase~TIGRFAM: Histidine ammonia-lyase~HAMAP: Histidine ammonia-lyase~KEGG: aav:Aave_2965 histidine ammonia-lyase gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1690 Alide2_1691 Alide2_1691 Alide2_1691 1792426 1793151 - transcriptional regulator%2C GntR family with UTRA sensor domain TIGRFAM: Histidine utilization repressor~PFAM: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR~KEGG: ctt:CtCNB1_0165 transcriptional regulator%2C histidine~SMART: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1691 Alide2_1692 Alide2_1692 Alide2_1692 1793294 1794772 + permease for cytosine/purines uracil thiamine allantoin PFAM: Permease%2C cytosine/purines%2C uracil%2C thiamine%2C allantoin~KEGG: ctt:CtCNB1_0166 cytosine/purines/uracil permease gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1692 Alide2_1693 Alide2_1693 Alide2_1693 1794816 1796537 + urocanate hydratase TIGRFAM: Urocanase~KEGG: dac:Daci_0150 urocanate hydratase~PFAM: Urocanase gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1693 Alide2_1694 Alide2_1694 Alide2_1694 1796626 1797405 + transcriptional regulator%2C IclR family KEGG: pol:Bpro_1041 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C C-terminal%3B Transcription regulator IclR%2C N-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1694 Alide2_1695 Alide2_1695 Alide2_1695 1797450 1798205 + ABC-type transporter%2C periplasmic subunit family 3 KEGG: pol:Bpro_1040 extracellular solute-binding protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3%3B Ionotropic glutamate receptor gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1695 Alide2_1696 Alide2_1696 Alide2_1696 1798220 1798888 + polar amino acid ABC transporter%2C inner membrane subunit KEGG: pol:Bpro_1039 amino acid ABC transporter permease~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1696 Alide2_1697 Alide2_1697 Alide2_1697 1798885 1799667 + Fe(3+)-transporting ATPase PFAM: ABC transporter-like~KEGG: pol:Bpro_1038 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1697 Alide2_1698 Alide2_1698 Alide2_1698 1799673 1800275 + HutD-family protein PFAM: Uncharacterised protein family HutD~KEGG: aav:Aave_2962 hypothetical protein gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1698 Alide2_1699 Alide2_1699 Alide2_1699 1800601 1801839 + imidazolonepropionase TIGRFAM: Imidazolonepropionase~KEGG: pol:Bpro_1035 imidazolonepropionase~PFAM: Amidohydrolase 1 gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1699 Alide2_1700 Alide2_1700 Alide2_1700 1801844 1803277 + formiminoglutamate deiminase KEGG: dac:Daci_0155 N-formimino-L-glutamate deiminase~TIGRFAM: Formiminoglutamate deiminase~PFAM: Amidohydrolase 1 gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1700 Alide2_1701 Alide2_1701 Alide2_1701 1803306 1804127 + N-formylglutamate amidohydrolase KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase~TIGRFAM: N-formylglutamate deformylase~PFAM: N-formylglutamate amidohydrolase gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1701 Alide2_1702 Alide2_1702 Alide2_1702 1804124 1804987 - glutamate racemase TIGRFAM: Glutamate racemase~KEGG: ajs:Ajs_2867 glutamate racemase~PFAM: Asp/Glu/hydantoin racemase gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1702 Alide2_1703 Alide2_1703 Alide2_1703 1805028 1805651 - protein of unknown function DUF938 PFAM: Protein of unknown function DUF938~KEGG: dia:Dtpsy_2352 protein of unknown function DUF938 gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1703 Alide2_1704 Alide2_1704 Alide2_1704 1805852 1806655 - 4-hydroxy-2-oxovalerate aldolase KEGG: aav:Aave_2080 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase~PFAM: Aldehyde-lyase domain gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1704 Alide2_1705 Alide2_1705 Alide2_1705 1806662 1808131 - succinic semialdehyde dehydrogenase TIGRFAM: Succinic semialdehyde dehydrogenase~KEGG: dac:Daci_2346 succinic semialdehyde dehydrogenase~PFAM: Aldehyde dehydrogenase domain gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1705 Alide2_1706 Alide2_1706 Alide2_1706 1808198 1809721 - Galactarate dehydratase PFAM: D-galactarate dehydratase/Altronate hydrolase%2C C-terminal%3B SAF domain~KEGG: ctt:CtCNB1_3469 outer membrane protein precursor~SMART: SAF domain gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1706 Alide2_1707 Alide2_1707 Alide2_1707 1809718 1810707 - hypothetical protein KEGG: ctt:CtCNB1_3468 TctC gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1707 Alide2_1708 Alide2_1708 Alide2_1708 1810807 1811769 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: aav:Aave_2084 LysR family transcriptional regulator gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1708 Alide2_1709 Alide2_1709 Alide2_1709 1811771 1812790 - Patatin PFAM: Patatin/Phospholipase A2-related~KEGG: dac:Daci_3706 patatin gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1709 Alide2_1710 Alide2_1710 Alide2_1710 1812962 1814053 - tartrate dehydrogenase TIGRFAM: Tartrate dehydrogenase~KEGG: aav:Aave_2087 tartrate dehydrogenase~PFAM: Isocitrate/isopropylmalate dehydrogenase gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1710 Alide2_1711 Alide2_1711 Alide2_1711 1814094 1815050 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_2361 LysR family transcriptional regulator gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1711 Alide2_1712 Alide2_1712 Alide2_1712 1815067 1816068 - hypothetical protein KEGG: dia:Dtpsy_0973 hypothetical protein gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1712 Alide2_1713 Alide2_1713 Alide2_1713 1816137 1816277 - hypothetical protein gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1713 Alide2_1714 Alide2_1714 Alide2_1714 1816411 1816548 - transcriptional regulatory protein QseB KEGG: abb:ABBFA_001155 transcriptional regulatory protein QseB gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1714 Alide2_1715 Alide2_1715 Alide2_1715 1816723 1817058 + histone family protein DNA-binding protein KEGG: pol:Bpro_4958 histone-like DNA-binding protein~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1715 Alide2_1716 Alide2_1716 Alide2_1716 1817156 1817638 + helix-turn-helix domain protein KEGG: pol:Bpro_5021 XRE family transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1716 Alide2_1717 Alide2_1717 Alide2_1717 1817975 1818871 - transcriptional regulator%2C LysR family KEGG: tmz:Tmz1t_1027 transcriptional regulator%2C LysR family~manually curated~PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1717 Alide2_1718 Alide2_1718 Alide2_1718 1818879 1819013 - pseudogene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1718 Alide2_1719 Alide2_1719 Alide2_1719 1819136 1819882 - acetoacetyl-CoA reductase SMART: Polyketide synthase/Fatty acid synthase%2C KR~TIGRFAM: Acetoacetyl-CoA reductase~KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1719 Alide2_1720 Alide2_1720 Alide2_1720 1819893 1820336 - hypothetical protein KEGG: tmz:Tmz1t_1024 hypothetical protein gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1720 Alide2_1721 Alide2_1721 Alide2_1721 1820445 1822205 - Poly-beta-hydroxybutyrate polymerase domain protein PFAM: Poly-beta-hydroxybutyrate polymerase%2C N-terminal%3B Alpha/beta hydrolase fold-1~KEGG: tmz:Tmz1t_1023 poly-beta-hydroxybutyrate polymerase domain protein gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1721 Alide2_1722 Alide2_1722 Alide2_1722 1822541 1823149 + regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: tmz:Tmz1t_1022 transcriptional regulator%2C TetR family gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1722 Alide2_1723 Alide2_1723 Alide2_1723 1823343 1823762 + hypothetical protein KEGG: tmz:Tmz1t_1021 hypothetical protein gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1723 Alide2_1724 Alide2_1724 Alide2_1724 1823790 1824830 + secretion protein HlyD family protein PFAM: Secretion protein HlyD~KEGG: tmz:Tmz1t_1020 hypothetical protein gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1724 Alide2_1725 Alide2_1725 Alide2_1725 1824832 1826604 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: tmz:Tmz1t_1019 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1725 Alide2_1726 Alide2_1726 Alide2_1726 1826601 1827770 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: tmz:Tmz1t_1018 ABC-2 type transporter gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1726 Alide2_1727 Alide2_1727 Alide2_1727 1827775 1828893 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: tmz:Tmz1t_1017 ABC-2 type transporter gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1727 Alide2_1728 Alide2_1728 Alide2_1728 1828890 1830428 + RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: rme:Rmet_1267 RND efflux system outer membrane lipoprotein NodT~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1728 Alide2_1729 Alide2_1729 Alide2_1729 1830449 1830652 + Protein of unknown function DUF2892 PFAM: Protein of unknown function DUF2892~KEGG: tmz:Tmz1t_1015 hypothetical protein gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1729 Alide2_1730 Alide2_1730 Alide2_1730 1830660 1832069 + beta-lactamase domain protein KEGG: rme:Rmet_1266 beta-lactamase-like protein~PFAM: Beta-lactamase-like%3B RNA-metabolising metallo-beta-lactamase~SMART: Beta-lactamase-like gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1730 Alide2_1731 Alide2_1731 Alide2_1731 1832069 1832935 + Conserved hypothetical protein CHP00730 KEGG: rme:Rmet_1265 hypothetical protein~TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG~PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1731 Alide2_1732 Alide2_1732 Alide2_1732 1832932 1834131 + Protein of unknown function DUF2219 PFAM: Protein of unknown function DUF2219~KEGG: rme:Rmet_1261 hypothetical protein gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1732 Alide2_1733 Alide2_1733 Alide2_1733 1834180 1834653 + hypothetical protein KEGG: tmz:Tmz1t_1007 hypothetical protein gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1733 Alide2_1734 Alide2_1734 Alide2_1734 1834765 1835253 - pseudogene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1734 Alide2_1735 Alide2_1735 Alide2_1735 1835667 1836578 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: tmz:Tmz1t_1002 transcriptional regulator%2C LysR family gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1735 Alide2_1736 Alide2_1736 Alide2_1736 1837133 1837888 + hypothetical protein KEGG: tmz:Tmz1t_1001 hypothetical protein gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1736 Alide2_1737 Alide2_1737 Alide2_1737 1838013 1838231 + phage transcriptional regulator%2C AlpA PFAM: Prophage CP4-57 regulatory~KEGG: tmz:Tmz1t_1000 phage transcriptional regulator%2C AlpA gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1737 Alide2_1738 Alide2_1738 Alide2_1738 1838272 1839138 + Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: tmz:Tmz1t_0999 cobyrinic acid ac-diamide synthase gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1738 Alide2_1739 Alide2_1739 Alide2_1739 1839122 1839358 + hypothetical protein KEGG: tmz:Tmz1t_0998 hypothetical protein gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1739 Alide2_1740 Alide2_1740 Alide2_1740 1839345 1840994 + Integrating conjugative element%2C PFGI-1%2C ParB KEGG: tmz:Tmz1t_0997 hypothetical protein~manually curated~TIGRFAM: Integrating conjugative element%2C PFGI-1%2C ParB gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1740 Alide2_1741 Alide2_1741 Alide2_1741 1841012 1841572 + hypothetical protein KEGG: mpt:Mpe_A2335 hypothetical protein gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1741 Alide2_1742 Alide2_1742 Alide2_1742 1841576 1842778 + hypothetical protein KEGG: mpt:Mpe_A2336 hypothetical protein gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1742 Alide2_1743 Alide2_1743 Alide2_1743 1842830 1844047 - hypothethical protein KEGG: rsl:RPSI07_1104 hypothethical protein gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1743 Alide2_1744 Alide2_1744 Alide2_1744 1844284 1845072 + integrating conjugative element protein%2C PFL_4669 family KEGG: mpt:Mpe_A2339 hypothetical protein~TIGRFAM: Integrating conjugative element protein%2C PFL4669~PFAM: Integrating conjugative element protein%2C PFL4669 gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1744 Alide2_1745 Alide2_1745 Alide2_1745 1845069 1845617 + hypothetical protein KEGG: tmz:Tmz1t_0992 hypothetical protein gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1745 Alide2_1746 Alide2_1746 Alide2_1746 1845614 1845997 + single-strand binding protein/Primosomal replication protein n PFAM: Primosome PriB/single-strand DNA-binding~KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1746 Alide2_1747 Alide2_1747 Alide2_1747 1846291 1848306 + DNA topoisomerase III SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain~TIGRFAM: DNA topoisomerase III%2C bacterial-type~KEGG: mpt:Mpe_A2342 DNA topoisomerase III~PFAM: DNA topoisomerase%2C type IA%2C central%3B Toprim domain%3B DNA topoisomerase%2C type IA%2C zn finger gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1747 Alide2_1748 Alide2_1748 Alide2_1748 1849086 1849322 + hypothetical protein KEGG: tmz:Tmz1t_0989 hypothetical protein gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1748 Alide2_1749 Alide2_1749 Alide2_1749 1849348 1849740 + hypothetical protein KEGG: ajs:Ajs_2230 hypothetical protein gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1749 Alide2_1750 Alide2_1750 Alide2_1750 1849991 1850707 + hypothetical protein KEGG: ajs:Ajs_2229 hypothetical protein gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1750 Alide2_1751 Alide2_1751 Alide2_1751 1850998 1851798 + hypothetical protein KEGG: tmz:Tmz1t_0980 hypothetical protein gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1751 Alide2_1752 Alide2_1752 Alide2_1752 1851865 1852227 + hypothetical protein KEGG: tmz:Tmz1t_0979 hypothetical protein gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1752 Alide2_1753 Alide2_1753 Alide2_1753 1852572 1853123 + hypothetical protein KEGG: mpt:Mpe_A2362 hypothetical protein gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1753 Alide2_1754 Alide2_1754 Alide2_1754 1853178 1853789 + hypothetical protein KEGG: mpt:Mpe_A2363 hypothetical protein gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1754 Alide2_1755 Alide2_1755 Alide2_1755 1853878 1854243 + hypothetical protein KEGG: mpt:Mpe_A2364 hypothetical protein gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1755 Alide2_1756 Alide2_1756 Alide2_1756 1854328 1854978 + hypothetical protein KEGG: tmz:Tmz1t_0975 hypothetical protein gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1756 Alide2_1757 Alide2_1757 Alide2_1757 1855044 1856153 + hypothetical protein KEGG: tmz:Tmz1t_0974 hypothetical protein gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1757 Alide2_1758 Alide2_1758 Alide2_1758 1856255 1856560 + hypothetical protein KEGG: ajs:Ajs_2221 hypothetical protein gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1758 Alide2_1759 Alide2_1759 Alide2_1759 1856661 1858931 + DEAD-like helicase SMART: DEAD-like helicase%2C N-terminal~KEGG: tmz:Tmz1t_0972 DEAD-like helicase gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1759 Alide2_1760 Alide2_1760 Alide2_1760 1858984 1859127 - pseudogene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1760 Alide2_1761 Alide2_1761 Alide2_1761 1859238 1860182 + Chromate resistance exported protein PFAM: Chromate resistance exported protein~KEGG: har:HEAR0891 putative chromate resistance protein gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1761 Alide2_1762 Alide2_1762 Alide2_1762 1860236 1861411 + chromate transporter%2C chromate ion transporter (CHR) family KEGG: sfu:Sfum_0092 chromate transporter~TIGRFAM: Chromate transporter%2C long chain~PFAM: Chromate transporter gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1762 Alide2_1763 Alide2_1763 Alide2_1763 1861471 1862064 + Manganese/iron superoxide dismutase PFAM: Manganese/iron superoxide dismutase%2C C-terminal~KEGG: rme:Rmet_6201 manganese and iron superoxide dismutase gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1763 Alide2_1764 Alide2_1764 Alide2_1764 1862139 1863044 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: xom:XOO_1208 transposase gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1764 Alide2_1765 Alide2_1765 Alide2_1765 1863041 1863364 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: azl:AZL_f00580 transposase gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1765 Alide2_1766 Alide2_1766 Alide2_1766 1863505 1864407 + protein of unknown function LppY and LpqO PFAM: Uncharacterised protein family%2C LppY/LpqO~KEGG: pop:POPTR_594759 hypothetical protein gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1766 Alide2_1767 Alide2_1767 Alide2_1767 1864509 1864964 + Chromate resistance exported protein PFAM: Chromate resistance exported protein~KEGG: bph:Bphy_5141 ChrB protein gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1767 Alide2_1768 Alide2_1768 Alide2_1768 1864964 1866178 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: vap:Vapar_6018 major facilitator superfamily MFS_1 gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1768 Alide2_1769 Alide2_1769 Alide2_1769 1866286 1866969 + two component transcriptional regulator%2C winged helix family KEGG: gbm:Gbem_2672 winged-helix transcriptional response regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1769 Alide2_1770 Alide2_1770 Alide2_1770 1866966 1868420 + heavy metal sensor signal transduction histidine kinase TIGRFAM: Signal transduction histidine kinase%2C heavy metal sensor~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain~KEGG: gbm:Gbem_2673 HAMP domain-containing sensor histidine kinase~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1770 Alide2_1771 Alide2_1771 Alide2_1771 1868417 1869505 + NHL repeat containing protein PFAM: NHL repeat~KEGG: phe:Phep_1359 NHL repeat containing protein gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1771 Alide2_1772 Alide2_1772 Alide2_1772 1869543 1869809 + hypothetical protein KEGG: nwa:Nwat_1254 hypothetical protein gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1772 Alide2_1773 Alide2_1773 Alide2_1773 1869806 1870522 + ABC transporter related protein KEGG: mno:Mnod_2229 ABC transporter related~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1773 Alide2_1774 Alide2_1774 Alide2_1774 1870689 1871975 + hypothetical protein KEGG: bvi:Bcep1808_7485 hypothetical protein gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1774 Alide2_1775 Alide2_1775 Alide2_1775 1871972 1872679 + hypothetical protein KEGG: mno:Mnod_2227 hypothetical protein gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1775 Alide2_1776 Alide2_1776 Alide2_1776 1872692 1873531 + hypothetical protein KEGG: bvi:Bcep1808_7486 hypothetical protein gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1776 Alide2_1777 Alide2_1777 Alide2_1777 1873558 1873887 - pseudogene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1777 Alide2_1778 Alide2_1778 Alide2_1778 1874184 1874744 + Integrating conjugative element protein PilL%2C PFGI-1 TIGRFAM: Integrating conjugative element protein PilL%2C PFGI-1~KEGG: tmz:Tmz1t_0968 hypothetical protein gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1778 Alide2_1779 Alide2_1779 Alide2_1779 1874741 1875388 + hypothetical protein KEGG: mpt:Mpe_A2376 hypothetical protein gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1779 Alide2_1780 Alide2_1780 Alide2_1780 1875398 1876117 + integrating conjugative element protein%2C PFL_4693 family TIGRFAM: Integrating conjugative element protein%2C PFL4693~KEGG: ajs:Ajs_2211 putative secreted protein gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1780 Alide2_1781 Alide2_1781 Alide2_1781 1876102 1876722 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: mpt:Mpe_A2378 hypothetical protein gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1781 Alide2_1782 Alide2_1782 Alide2_1782 1876719 1877252 + integrating conjugative element protein%2C PFL_4695 family TIGRFAM: Integrating conjugative element protein%2C PFL4695~KEGG: mpt:Mpe_A2379 hypothetical protein gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1782 Alide2_1783 Alide2_1783 Alide2_1783 1877261 1879417 + conjugative coupling factor TraD%2C SXT/TOL subfamily KEGG: tmz:Tmz1t_0963 hypothetical protein~manually curated~TIGRFAM: Conjugative coupling factor TraG/TraD%3B Conjugative coupling factor TraG/TraD%2C PFGI-1 gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1783 Alide2_1784 Alide2_1784 Alide2_1784 1879414 1880163 + integrating conjugative element membrane protein%2C PFL_4697 family TIGRFAM: Integrating conjugative element protein%2C PFL4697%2C membrane~KEGG: mpt:Mpe_A2381 hypothetical protein gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1784 Alide2_1785 Alide2_1785 Alide2_1785 1880209 1882836 - hypothetical protein KEGG: cli:Clim_0127 hypothetical protein gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1785 Alide2_1786 Alide2_1786 Alide2_1786 1882947 1885685 - type III restriction protein res subunit PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: eba:ebA2417 hypothetical protein gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1786 Alide2_1787 Alide2_1787 Alide2_1787 1885685 1887391 - DNA methylase N-4/N-6 domain protein PFAM: DNA methylase N-4/N-6~KEGG: bpm:BURPS1710b_3656 adenine specific DNA methylase Mod gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1787 Alide2_1788 Alide2_1788 Alide2_1788 1887402 1889192 - Abortive phage infection protein PFAM: Abortive phage infection~KEGG: pph:Ppha_0341 hypothetical protein gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1788 Alide2_1789 Alide2_1789 Alide2_1789 1889192 1891390 - peptidase S8 and S53 subtilisin kexin sedolisin PFAM: Peptidase S8/S53%2C subtilisin/kexin/sedolisin~KEGG: alv:Alvin_2786 peptidase S8 and S53 subtilisin kexin sedolisin gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1789 Alide2_1790 Alide2_1790 Alide2_1790 1891555 1892541 - AAA ATPase central domain protein KEGG: alv:Alvin_2785 AAA ATPase central domain-containing protein~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1790 Alide2_1791 Alide2_1791 Alide2_1791 1892622 1895501 - SNF2-related protein manually curated~PFAM: SNF2-related%3B Helicase%2C C-terminal~KEGG: tbd:Tbd_0933 DEAD/DEAH box helicase~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1791 Alide2_1792 Alide2_1792 Alide2_1792 1895560 1895760 - DNA binding domain protein%2C excisionase family KEGG: ajs:Ajs_2531 phage transcriptional regulator%2C AlpA~TIGRFAM: Excisionase/Xis%2C DNA-binding~PFAM: Prophage CP4-57 regulatory gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1792 Alide2_1793 Alide2_1793 Alide2_1793 1895984 1896349 + Protein of unknown function%2C RAQPRD KEGG: tmz:Tmz1t_0956 hypothetical protein~TIGRFAM: Uncharacterised protein family%2C RAQPRD~PFAM: Uncharacterised protein family%2C RAQPRD gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1793 Alide2_1794 Alide2_1794 Alide2_1794 1896346 1896585 + integrating conjugative element protein%2C PFL_4701 family TIGRFAM: Protein of unknown function DUF3262~KEGG: ajs:Ajs_2193 hypothetical protein gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1794 Alide2_1795 Alide2_1795 Alide2_1795 1896608 1896976 + integrating conjugative element membrane protein%2C PFL_4702 family TIGRFAM: Integrating conjugative element protein PFL4702~KEGG: tmz:Tmz1t_0954 hypothetical protein gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1795 Alide2_1796 Alide2_1796 Alide2_1796 1896989 1897399 + conjugative transfer region protein%2C TIGR03750 family TIGRFAM: Protein of unknown function DUF3487~KEGG: ajs:Ajs_2191 hypothetical protein gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1796 Alide2_1797 Alide2_1797 Alide2_1797 1897396 1898088 + integrating conjugative element protein%2C PFL_4703 family TIGRFAM: Protein of unknown function DUF2895~KEGG: mpt:Mpe_A2390 hypothetical protein gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1797 Alide2_1798 Alide2_1798 Alide2_1798 1898085 1898999 + integrating conjugative element protein%2C PFL_4704 family TIGRFAM: Integrating conjugative element protein%2C PFL4704~KEGG: ajs:Ajs_2189 hypothetical protein gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1798 Alide2_1799 Alide2_1799 Alide2_1799 1898989 1900422 + integrating conjugative element protein%2C PFL_4705 family TIGRFAM: Integrating conjugative element protein%2C PFL4705~KEGG: mpt:Mpe_A2392 hypothetical protein gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1799 Alide2_1800 Alide2_1800 Alide2_1800 1900403 1900837 + conjugative transfer region lipoprotein%2C TIGR03751 family TIGRFAM: Conjugative transfer region lipoprotein~KEGG: mpt:Mpe_A2393 hypothetical protein gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1800 Alide2_1801 Alide2_1801 Alide2_1801 1900837 1903725 + conjugative transfer ATPase%2C PFL_4706 family TIGRFAM: Conjugative transfer ATPase%2C PFL4706~KEGG: tmz:Tmz1t_0948 hypothetical protein gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1801 Alide2_1802 Alide2_1802 Alide2_1802 1903739 1904482 + hypothetical protein KEGG: tmz:Tmz1t_0947 hypothetical protein gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1802 Alide2_1803 Alide2_1803 Alide2_1803 1904678 1905172 + DNA repair protein RadC KEGG: ajs:Ajs_2184 DNA repair protein RadC~TIGRFAM: Uncharacterised protein family UPF0758~PFAM: Uncharacterised protein family UPF0758 gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1803 Alide2_1804 Alide2_1804 Alide2_1804 1905395 1905871 + hypothetical protein KEGG: app:CAP2UW1_2945 hypothetical protein gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1804 Alide2_1805 Alide2_1805 Alide2_1805 1905868 1908831 + N-6 DNA methylase KEGG: app:CAP2UW1_2946 N-6 DNA methylase gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1805 Alide2_1806 Alide2_1806 Alide2_1806 1908981 1909499 + hypothetical protein KEGG: app:CAP2UW1_2947 hypothetical protein gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1806 Alide2_1807 Alide2_1807 Alide2_1807 1909643 1910086 + integrating conjugative element protein%2C PFL_4709 family KEGG: ajs:Ajs_2183 hypothetical protein~TIGRFAM: Integrating conjugative element protein%2C PFL4709~PFAM: Integrating conjugative element protein%2C PFL4709 gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1807 Alide2_1808 Alide2_1808 Alide2_1808 1910083 1911027 + integrating conjugative element protein%2C PFL_4710 family KEGG: eba:ebA2511 hypothetical protein~TIGRFAM: Integrating conjugative element protein%2C PFL4710~PFAM: Integrating conjugative element protein%2C PFL4710 gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1808 Alide2_1809 Alide2_1809 Alide2_1809 1911038 1912444 + integrating conjugative element protein%2C PFL_4711 family TIGRFAM: Integrating conjugative element protein%2C PFL4711~KEGG: ajs:Ajs_2181 hypothetical protein gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1809 Alide2_1810 Alide2_1810 Alide2_1810 1912441 1912794 + hypothetical protein KEGG: ajs:Ajs_2180 hypothetical protein gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1810 Alide2_1811 Alide2_1811 Alide2_1811 1912810 1914333 + hypothetical protein KEGG: ajs:Ajs_2179 hypothetical protein gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1811 Alide2_1812 Alide2_1812 Alide2_1812 1914350 1914718 - Protein of unknown function DUF3742 PFAM: Protein of unknown function DUF3742~KEGG: ajs:Ajs_2178 hypothetical protein gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1812 Alide2_1813 Alide2_1813 Alide2_1813 1914948 1915706 + hypothetical protein KEGG: mpt:Mpe_A2403 hypothetical protein gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1813 Alide2_1814 Alide2_1814 Alide2_1814 1915699 1916619 + Domain of unknown function DUF1814 PFAM: Protein of unknown function DUF1814~KEGG: ajs:Ajs_2176 hypothetical protein gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1814 Alide2_1815 Alide2_1815 Alide2_1815 1916822 1918666 + integrating conjugative element relaxase%2C PFGI-1 class KEGG: ajs:Ajs_2175 relaxase~TIGRFAM: Integrating conjugative element relaxase%2C PFGI-1 class~PFAM: Uncharacterised protein family%2C helicase/relaxase%2C putative%3B Domain of unknown function DUF1528%2C C-terminal gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1815 Alide2_1816 Alide2_1816 Alide2_1816 1918693 1918992 - helix-turn-helix domain protein KEGG: mpt:Mpe_A2406 hypothetical protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1816 Alide2_1817 Alide2_1817 Alide2_1817 1919098 1919724 + LysR substrate-binding protein PFAM: LysR%2C substrate-binding~KEGG: mpt:Mpe_A2407 transcriptional regulator gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1817 Alide2_1818 Alide2_1818 Alide2_1818 1919738 1919902 - pseudogene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1818 Alide2_1819 Alide2_1819 Alide2_1819 1919906 1920985 - Lipoprotein signal peptidase SMART: Phosphatidic acid phosphatase type 2/haloperoxidase~TIGRFAM: Peptidase A8%2C signal peptidase II~KEGG: kpu:pK2044_00535 lipoprotein signal peptidase~HAMAP: Peptidase A8%2C signal peptidase II~PFAM: Peptidase A8%2C signal peptidase II%3B Phosphatidic acid phosphatase type 2/haloperoxidase gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1819 Alide2_1820 Alide2_1820 Alide2_1820 1920982 1923384 - heavy metal translocating P-type ATPase TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P-type%2C heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: tin:Tint_3215 heavy metal translocating P-type ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Haloacid dehalogenase-like hydrolase gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1820 Alide2_1821 Alide2_1821 Alide2_1821 1923466 1923909 + transcriptional regulator%2C MerR family TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~KEGG: tgr:Tgr7_2809 putative transcriptional regulator%2C MerR family~SMART: HTH transcriptional regulator%2C MerR gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1821 Alide2_1822 Alide2_1822 Alide2_1822 1923945 1925798 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: mpt:Mpe_A2408 integrase (int) gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1822 Alide2_1823 Alide2_1823 Alide2_1823 1926278 1926889 + hypothetical protein KEGG: pna:Pnap_4574 hypothetical protein gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1823 Alide2_1824 Alide2_1824 Alide2_1824 1926985 1928460 + hypothetical protein KEGG: xfa:XF2733 hypothetical protein gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1824 Alide2_1825 Alide2_1825 Alide2_1825 1928492 1929166 + hypothetical protein KEGG: tmz:Tmz1t_0049 hypothetical protein gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1825 Alide2_1826 Alide2_1826 Alide2_1826 1929163 1932540 + conserved hypothetical cytosolic protein KEGG: tmz:Tmz1t_0051 conserved hypothetical cytosolic protein gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1826 Alide2_1827 Alide2_1827 Alide2_1827 1932537 1933742 + hypothetical protein KEGG: xfm:Xfasm12_2281 hypothetical protein gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1827 Alide2_1828 Alide2_1828 Alide2_1828 1933764 1934132 - pseudogene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1828 Alide2_1829 Alide2_1829 Alide2_1829 1934967 1935326 - pseudogene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1829 Alide2_1830 Alide2_1830 Alide2_1830 1935553 1935846 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: rpi:Rpic_2066 transposase IS3/IS911 family protein gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1830 Alide2_1831 Alide2_1831 Alide2_1831 1935843 1936472 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rde:RD1_3452 transposase%2C putative gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1831 Alide2_1832 Alide2_1832 Alide2_1832 1937148 1937780 - transcriptional regulator%2C TetR family PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: pol:Bpro_5293 TetR family transcriptional regulator gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1832 Alide2_1833 Alide2_1833 Alide2_1833 1938014 1939180 + Butyryl-CoA dehydrogenase KEGG: axy:AXYL_02788 acyl-CoA dehydrogenase 1~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1833 Alide2_1834 Alide2_1834 Alide2_1834 1939221 1940537 + Formyl-CoA transferase KEGG: reu:Reut_A3087 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1834 Alide2_1835 Alide2_1835 Alide2_1835 1940534 1941676 + acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C type 1~KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1835 Alide2_1836 Alide2_1836 Alide2_1836 1941690 1942847 + Butyryl-CoA dehydrogenase KEGG: pol:Bpro_5277 acyl-CoA dehydrogenase-like~PFAM: Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C type 1 gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1836 Alide2_1837 Alide2_1837 Alide2_1837 1942967 1943359 - protein of unknown function DUF35 PFAM: Domain of unknown function DUF35%2C OB-fold%2C C-terminal~KEGG: eba:ebB200 putative thiolase subunit gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1837 Alide2_1838 Alide2_1838 Alide2_1838 1943364 1944530 - acetyl-CoA acetyltransferase KEGG: reh:H16_A1297 acetyl-CoA acetyltransferase gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1838 Alide2_1839 Alide2_1839 Alide2_1839 1944635 1945567 - transcriptional regulator%2C IclR family KEGG: pol:Bpro_5250 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C C-terminal%3B Transcription regulator IclR%2C N-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1839 Alide2_1840 Alide2_1840 Alide2_1840 1945716 1946474 + 3-oxoacyl-(acyl-carrier-protein) reductase PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: eba:ebA5300 putative dehydrogenase~SMART: Polyketide synthase/Fatty acid synthase%2C KR gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1840 Alide2_1841 Alide2_1841 Alide2_1841 1946575 1948692 + CoA-binding domain protein KEGG: bpt:Bpet1210 acetyl-CoA synthetase~PFAM: CoA-binding~SMART: CoA-binding gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1841 Alide2_1842 Alide2_1842 Alide2_1842 1948715 1949684 + pseudogene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1842 Alide2_1843 Alide2_1843 Alide2_1843 1949903 1950721 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: dac:Daci_0194 enoyl-CoA hydratase/isomerase gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1843 Alide2_1844 Alide2_1844 Alide2_1844 1950735 1953017 + Isovaleryl-CoA dehydrogenase%2C Butyryl-CoA dehydrogenase KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1844 Alide2_1845 Alide2_1845 Alide2_1845 1953082 1954038 - hypothetical protein KEGG: reu:Reut_B4356 hypothetical protein gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1845 Alide2_1846 Alide2_1846 Alide2_1846 1954041 1954999 - pseudogene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1846 Alide2_1847 Alide2_1847 Alide2_1847 1955011 1955982 - extra-cytoplasmic solute receptor KEGG: rme:Rmet_3671 extra-cytoplasmic solute receptor gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1847 Alide2_1848 Alide2_1848 Alide2_1848 1956027 1957001 - hypothetical protein KEGG: cti:RALTA_B1677 conserved hypothetical protein%3B UPF0065 gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1848 Alide2_1849 Alide2_1849 Alide2_1849 1957199 1958056 - 3-alpha%2C7-alpha%2C12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase KEGG: pol:Bpro_5282 MaoC-like dehydratase~PFAM: MaoC-like dehydratase gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1849 Alide2_1850 Alide2_1850 Alide2_1850 1958046 1958363 - hypothetical protein gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1850 Alide2_1851 Alide2_1851 Alide2_1851 1958445 1959302 - hypothetical protein KEGG: bbr:BB4339 hypothetical protein gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1851 Alide2_1852 Alide2_1852 Alide2_1852 1959514 1959939 - regulatory protein IclR KEGG: pol:Bpro_5250 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1852 Alide2_1853 Alide2_1853 Alide2_1853 1960337 1961089 + Electron transfer flavoprotein alpha/beta-subunit KEGG: azo:azo2492 electron transfer flavoprotein subunit beta~PFAM: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1853 Alide2_1854 Alide2_1854 Alide2_1854 1961086 1962027 + Electron transfer flavoprotein alpha subunit KEGG: tmz:Tmz1t_0422 electron transfer flavoprotein alpha subunit~PFAM: Electron transfer flavoprotein%2C alpha subunit%2C C-terminal%3B Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1854 Alide2_1855 Alide2_1855 Alide2_1855 1962062 1962832 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: bxe:Bxe_C0269 enoyl-CoA hydratase gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1855 Alide2_1856 Alide2_1856 Alide2_1856 1962952 1963911 + 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase%2C NPD~KEGG: bph:Bphy_0157 2-nitropropane dioxygenase NPD gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1856 Alide2_1857 Alide2_1857 Alide2_1857 1964047 1965024 + hypothetical protein KEGG: vap:Vapar_0801 hypothetical protein gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1857 Alide2_1858 Alide2_1858 Alide2_1858 1965148 1966050 - alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: pla:Plav_2055 alpha/beta hydrolase fold gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1858 Alide2_1859 Alide2_1859 Alide2_1859 1966073 1967245 - Alpha-methylacyl-CoA racemase manually curated~KEGG: mau:Micau_2811 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1859 Alide2_1860 Alide2_1860 Alide2_1860 1967236 1968531 - 4-hydroxybutyrate-CoA transferase/hydrolase KEGG: rpa:RPA4552 4-hydroxybutyrate-CoA transferase/hydrolase gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1860 Alide2_1861 Alide2_1861 Alide2_1861 1968554 1970008 - MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: bur:Bcep18194_C7308 MmgE/PrpD gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1861 Alide2_1862 Alide2_1862 Alide2_1862 1970044 1971018 - hypothetical protein KEGG: bbr:BB3950 hypothetical protein gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1862 Alide2_1863 Alide2_1863 Alide2_1863 1971089 1972354 - Formyl-CoA transferase KEGG: bbr:BB4584 hypothetical protein~PFAM: CoA-transferase family III gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1863 Alide2_1864 Alide2_1864 Alide2_1864 1972351 1973490 - Butyryl-CoA dehydrogenase KEGG: bur:Bcep18194_C7492 acyl-CoA dehydrogenase-like~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1864 Alide2_1865 Alide2_1865 Alide2_1865 1973518 1973964 - MaoC domain protein dehydratase PFAM: MaoC-like dehydratase~KEGG: bur:Bcep18194_C7491 MaoC-like dehydratase gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1865 Alide2_1866 Alide2_1866 Alide2_1866 1974158 1974652 + hypothetical protein KEGG: bpt:Bpet1156 hypothetical protein gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1866 Alide2_1867 Alide2_1867 Alide2_1867 1974694 1975665 + putative secreted protein KEGG: bpt:Bpet1157 putative secreted protein gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1867 Alide2_1868 Alide2_1868 Alide2_1868 1975662 1976480 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: bpt:Bpet1158 putative enoyl-CoA hydratase/isomerase gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1868 Alide2_1869 Alide2_1869 Alide2_1869 1976477 1977313 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: axy:AXYL_06657 enoyl-CoA hydratase/isomerase family protein 35 gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1869 Alide2_1870 Alide2_1870 Alide2_1870 1977310 1978122 - transcriptional regulator%2C IclR family KEGG: axy:AXYL_06658 transcriptional regulator family protein 40~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1870 Alide2_1871 Alide2_1871 Alide2_1871 1978122 1978943 - transcriptional regulator%2C IclR family KEGG: axy:AXYL_06659 transcriptional regulator family protein 41~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1871 Alide2_1872 Alide2_1872 Alide2_1872 1978995 1980938 - Methylcrotonoyl-CoA carboxylase%2C Pyruvate carboxylase PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal%3B Biotin carboxylase%2C C-terminal%3B Biotin/lipoyl attachment~KEGG: bpt:Bpet1154 putative biotin carboxylase subunit of propionyl-CoA carboxylase~SMART: Biotin carboxylase%2C C-terminal gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1872 Alide2_1873 Alide2_1873 Alide2_1873 1980941 1982545 - Methylcrotonoyl-CoA carboxylase KEGG: bpt:Bpet1153 putative propionyl-CoA carboxylase beta subunit~PFAM: Carboxyl transferase gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1873 Alide2_1874 Alide2_1874 Alide2_1874 1982548 1982859 - hypothetical protein KEGG: bpt:Bpet1152 hypothetical protein gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1874 Alide2_1875 Alide2_1875 Alide2_1875 1982870 1984246 - protein of unknown function DUF1446 PFAM: Protein of unknown function DUF1446~KEGG: bpt:Bpet1151 hypothetical protein gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1875 Alide2_1876 Alide2_1876 Alide2_1876 1984420 1984806 + phenylacetic acid degradation-related protein KEGG: reh:H16_B1907 hypothetical protein~TIGRFAM: Phenylacetic acid degradation-related protein~PFAM: Thioesterase superfamily gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1876 Alide2_1877 Alide2_1877 Alide2_1877 1984836 1985573 - pseudogene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1877 Alide2_1878 Alide2_1878 Alide2_1878 1985576 1986172 + pseudogene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1878 Alide2_1879 Alide2_1879 Alide2_1879 1986223 1987026 - IstB domain protein ATP-binding protein KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1879 Alide2_1880 Alide2_1880 Alide2_1880 1987016 1988542 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: axy:AXYL_06593 integrase family protein 10 gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1880 Alide2_1881 Alide2_1881 Alide2_1881 1988654 1988755 + pseudogene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1881 Alide2_1882 Alide2_1882 Alide2_1882 1988887 1989426 + hypothetical protein KEGG: tmz:Tmz1t_0992 hypothetical protein gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1882 Alide2_1883 Alide2_1883 Alide2_1883 1989423 1989806 + single-strand binding protein/Primosomal replication protein n PFAM: Primosome PriB/single-strand DNA-binding~KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1883 Alide2_1884 Alide2_1884 Alide2_1884 1990101 1992131 + DNA topoisomerase III SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain~TIGRFAM: DNA topoisomerase III%2C bacterial-type~KEGG: mpt:Mpe_A2342 DNA topoisomerase III~PFAM: DNA topoisomerase%2C type IA%2C central%3B Toprim domain%3B DNA topoisomerase%2C type IA%2C zn finger gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1884 Alide2_1885 Alide2_1885 Alide2_1885 1992657 1993487 - arsenate reductase KEGG: mpt:Mpe_A2343 arsenate reductase~TIGRFAM: Arsenate reductase~PFAM: Arsenate reductase-like%3B GCN5-related N-acetyltransferase (GNAT) domain gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1885 Alide2_1886 Alide2_1886 Alide2_1886 1993484 1994575 - arsenical-resistance protein KEGG: mpt:Mpe_A2344 ACR3 permease~TIGRFAM: Arsenical-resistance protein ACR3~PFAM: Bile acid:sodium symporter gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1886 Alide2_1887 Alide2_1887 Alide2_1887 1994585 1995082 - protein tyrosine phosphatase KEGG: mpt:Mpe_A2345 arsenate reductase%2C putative~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~SMART: Protein-tyrosine phosphatase%2C low molecular weight gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1887 Alide2_1888 Alide2_1888 Alide2_1888 1995095 1995559 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: mpt:Mpe_A2346 hypothetical protein gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1888 Alide2_1889 Alide2_1889 Alide2_1889 1995572 1995901 - regulatory protein ArsR SMART: HTH transcriptional regulator%2C ArsR~KEGG: mpt:Mpe_A2347 ArsR family transcriptional regulator gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1889 Alide2_1890 Alide2_1890 Alide2_1890 1996153 1996479 + hypothetical protein KEGG: rpf:Rpic12D_0655 hypothetical protein gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1890 Alide2_1891 Alide2_1891 Alide2_1891 1996505 1996897 + hypothetical protein KEGG: rpf:Rpic12D_0656 hypothetical protein gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1891 Alide2_1892 Alide2_1892 Alide2_1892 1996999 1997463 + hypothetical protein KEGG: tau:Tola_2412 hypothetical protein gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1892 Alide2_1893 Alide2_1893 Alide2_1893 1997544 1998260 + hypothetical protein KEGG: rpf:Rpic12D_0658 hypothetical protein gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1893 Alide2_1894 Alide2_1894 Alide2_1894 1998554 1999351 + hypothetical protein KEGG: rpf:Rpic12D_0659 hypothetical protein gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1894 Alide2_1895 Alide2_1895 Alide2_1895 1999426 1999791 + hypothetical protein KEGG: ajs:Ajs_2227 hypothetical protein gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1895 Alide2_1896 Alide2_1896 Alide2_1896 1999934 2000776 + hypothetical protein KEGG: rpf:Rpic12D_0661 hypothetical protein gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1896 Alide2_1897 Alide2_1897 Alide2_1897 2001095 2001649 + hypothetical protein KEGG: rpf:Rpic12D_0662 hypothetical protein gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1897 Alide2_1898 Alide2_1898 Alide2_1898 2001770 2002399 + hypothetical protein KEGG: rpf:Rpic12D_0663 hypothetical protein gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1898 Alide2_1899 Alide2_1899 Alide2_1899 2002501 2002893 + hypothetical protein KEGG: mpt:Mpe_A2364 hypothetical protein gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1899 Alide2_1900 Alide2_1900 Alide2_1900 2002901 2003170 + hypothetical protein KEGG: tgr:Tgr7_2834 hypothetical protein gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1900 Alide2_1901 Alide2_1901 Alide2_1901 2003308 2004135 + protein of unknown function DUF932 PFAM: Protein of unknown function DUF932~KEGG: rpf:Rpic12D_0664 protein of unknown function DUF932 gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1901 Alide2_1902 Alide2_1902 Alide2_1902 2004636 2005292 + hypothetical protein KEGG: rpf:Rpic12D_0665 hypothetical protein gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1902 Alide2_1903 Alide2_1903 Alide2_1903 2005360 2006475 + hypothetical protein KEGG: rpf:Rpic12D_0666 hypothetical protein gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1903 Alide2_1904 Alide2_1904 Alide2_1904 2006587 2006892 + hypothetical protein KEGG: tmz:Tmz1t_0973 hypothetical protein gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1904 Alide2_1905 Alide2_1905 Alide2_1905 2006995 2009277 + DEAD-like helicase SMART: DEAD-like helicase%2C N-terminal~KEGG: rpf:Rpic12D_0667 DEAD-like helicase gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1905 Alide2_1906 Alide2_1906 Alide2_1906 2009437 2010048 + Integrating conjugative element protein PilL%2C PFGI-1 TIGRFAM: Integrating conjugative element protein PilL%2C PFGI-1~KEGG: rpf:Rpic12D_0668 hypothetical protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1906 Alide2_1907 Alide2_1907 Alide2_1907 2010045 2010689 + hypothetical protein KEGG: rpf:Rpic12D_0669 hypothetical protein gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1907 Alide2_1908 Alide2_1908 Alide2_1908 2010699 2011430 + integrating conjugative element protein%2C PFL_4693 family TIGRFAM: Integrating conjugative element protein%2C PFL4693~KEGG: rpf:Rpic12D_0670 putative secreted protein gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1908 Alide2_1909 Alide2_1909 Alide2_1909 2011415 2012014 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: rpf:Rpic12D_0671 lytic transglycosylase catalytic gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1909 Alide2_1910 Alide2_1910 Alide2_1910 2012011 2012577 + integrating conjugative element protein%2C PFL_4695 family TIGRFAM: Integrating conjugative element protein%2C PFL4695~KEGG: rpf:Rpic12D_0672 hypothetical protein gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1910 Alide2_1911 Alide2_1911 Alide2_1911 2012598 2014757 + conjugative coupling factor TraD%2C SXT/TOL subfamily TIGRFAM: Conjugative coupling factor TraG/TraD%3B Conjugative coupling factor TraG/TraD%2C PFGI-1~KEGG: rpf:Rpic12D_0673 hypothetical protein gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1911 Alide2_1912 Alide2_1912 Alide2_1912 2014754 2015503 + integrating conjugative element membrane protein%2C PFL_4697 family TIGRFAM: Integrating conjugative element protein%2C PFL4697%2C membrane~KEGG: rpf:Rpic12D_0674 hypothetical protein gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1912 Alide2_1913 Alide2_1913 Alide2_1913 2015617 2016024 + Protein of unknown function%2C RAQPRD KEGG: rpf:Rpic12D_0675 hypothetical protein~TIGRFAM: Uncharacterised protein family%2C RAQPRD~PFAM: Uncharacterised protein family%2C RAQPRD gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1913 Alide2_1914 Alide2_1914 Alide2_1914 2016021 2016260 + integrating conjugative element protein%2C PFL_4701 family TIGRFAM: Protein of unknown function DUF3262~KEGG: rpf:Rpic12D_0676 hypothetical protein gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1914 Alide2_1915 Alide2_1915 Alide2_1915 2016282 2016659 + integrating conjugative element membrane protein%2C PFL_4702 family TIGRFAM: Integrating conjugative element protein PFL4702~KEGG: rpf:Rpic12D_0677 hypothetical protein gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1915 Alide2_1916 Alide2_1916 Alide2_1916 2016672 2017100 + conjugative transfer region protein%2C TIGR03750 family TIGRFAM: Protein of unknown function DUF3487~KEGG: rpf:Rpic12D_0678 hypothetical protein gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1916 Alide2_1917 Alide2_1917 Alide2_1917 2017097 2017789 + integrating conjugative element protein%2C PFL_4703 family TIGRFAM: Protein of unknown function DUF2895~KEGG: rpf:Rpic12D_0679 hypothetical protein gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1917 Alide2_1918 Alide2_1918 Alide2_1918 2017786 2018715 + integrating conjugative element protein%2C PFL_4704 family TIGRFAM: Integrating conjugative element protein%2C PFL4704~KEGG: rpf:Rpic12D_0680 hypothetical protein gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1918 Alide2_1919 Alide2_1919 Alide2_1919 2018705 2020174 + integrating conjugative element protein%2C PFL_4705 family TIGRFAM: Integrating conjugative element protein%2C PFL4705~KEGG: rpf:Rpic12D_0681 hypothetical protein gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1919 Alide2_1920 Alide2_1920 Alide2_1920 2020155 2020589 + conjugative transfer region lipoprotein%2C TIGR03751 family TIGRFAM: Conjugative transfer region lipoprotein~KEGG: rpf:Rpic12D_0682 hypothetical protein gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1920 Alide2_1921 Alide2_1921 Alide2_1921 2020589 2023471 + conjugative transfer ATPase%2C PFL_4706 family TIGRFAM: Conjugative transfer ATPase%2C PFL4706~KEGG: rpf:Rpic12D_0683 hypothetical protein gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1921 Alide2_1922 Alide2_1922 Alide2_1922 2023482 2024237 + DSBA oxidoreductase PFAM: DSBA-like thioredoxin domain~KEGG: rpf:Rpic12D_0684 DsbA oxidoreductase gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1922 Alide2_1923 Alide2_1923 Alide2_1923 2024431 2025018 + hypothetical protein KEGG: net:Neut_0078 hypothetical protein gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1923 Alide2_1924 Alide2_1924 Alide2_1924 2025193 2025801 + regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: maq:Maqu_1250 TetR family transcriptional regulator gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1924 Alide2_1925 Alide2_1925 Alide2_1925 2025798 2026949 + efflux transporter%2C RND family%2C MFP subunit KEGG: ppd:Ppro_3851 RND family efflux transporter MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1925 Alide2_1926 Alide2_1926 Alide2_1926 2026946 2028151 + protein of unknown function DUF214 PFAM: Domain of unknown function DUF214%2C ABC transporter permease~KEGG: ppd:Ppro_3850 hypothetical protein gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1926 Alide2_1927 Alide2_1927 Alide2_1927 2028153 2028863 + Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: ppd:Ppro_3849 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1927 Alide2_1928 Alide2_1928 Alide2_1928 2028892 2029365 + hypothetical protein KEGG: ppd:Ppro_3848 hypothetical protein gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1928 Alide2_1929 Alide2_1929 Alide2_1929 2029352 2030839 + RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: maq:Maqu_1255 RND efflux system outer membrane lipoprotein~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1929 Alide2_1930 Alide2_1930 Alide2_1930 2030999 2032681 + Integrase catalytic region PFAM: Integrase%2C catalytic core%3B Transposase-like%2C Mu%2C C-terminal~KEGG: bxe:Bxe_C1173 integrase TniA gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1930 Alide2_1931 Alide2_1931 Alide2_1931 2032684 2033592 + TniB family protein KEGG: bxe:Bxe_C1174 transposition protein TniB~PFAM: Bacterial TniB~SMART: ATPase%2C AAA+ type%2C core gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1931 Alide2_1932 Alide2_1932 Alide2_1932 2033589 2034806 + TniQ family protein KEGG: bxe:Bxe_C1175 transposition protein TniQ~manually curated~PFAM: TniQ gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1932 Alide2_1933 Alide2_1933 Alide2_1933 2034867 2035037 + pseudogene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1933 Alide2_1934 Alide2_1934 Alide2_1934 2035040 2035489 + Conserved hypothetical protein CHP02391 KEGG: shn:Shewana3_1247 hypothetical protein~TIGRFAM: Conserved hypothetical protein CHP02391~PFAM: Conserved hypothetical protein CHP02391 gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1934 Alide2_1935 Alide2_1935 Alide2_1935 2035433 2036503 - aminoglycoside phosphotransferase PFAM: Aminoglycoside phosphotransferase~KEGG: bxe:Bxe_C1178 hypothetical protein gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1935 Alide2_1936 Alide2_1936 Alide2_1936 2036519 2038321 - Xenobiotic-transporting ATPase PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane domain~KEGG: art:Arth_4258 ABC transporter-like protein~SMART: ATPase%2C AAA+ type%2C core gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1936 Alide2_1937 Alide2_1937 Alide2_1937 2038318 2040144 - Xenobiotic-transporting ATPase PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane domain~KEGG: art:Arth_4257 ABC transporter-like protein~SMART: ATPase%2C AAA+ type%2C core gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1937 Alide2_1938 Alide2_1938 Alide2_1938 2040191 2040550 - hypothetical protein KEGG: bvi:Bcep1808_7475 hypothetical protein gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1938 Alide2_1939 Alide2_1939 Alide2_1939 2040610 2041512 - protein of unknown function LppY and LpqO PFAM: Uncharacterised protein family%2C LppY/LpqO~KEGG: pop:POPTR_594759 hypothetical protein gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1939 Alide2_1940 Alide2_1940 Alide2_1940 2041585 2041965 - hypothetical protein KEGG: bxe:Bxe_C1203 hypothetical protein gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1940 Alide2_1941 Alide2_1941 Alide2_1941 2041990 2042448 - Chromate resistance exported protein PFAM: Chromate resistance exported protein~KEGG: bxe:Bxe_C1204 hypothetical protein gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1941 Alide2_1942 Alide2_1942 Alide2_1942 2042453 2043361 - Manganese/iron superoxide dismutase KEGG: bxe:Bxe_C1205 putative superoxide dismutase~PFAM: Manganese/iron superoxide dismutase%2C C-terminal~SMART: Rhodanese-like gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1942 Alide2_1943 Alide2_1943 Alide2_1943 2043423 2044619 - chromate transporter%2C chromate ion transporter (CHR) family KEGG: bxe:Bxe_C1206 chromate transporter~TIGRFAM: Chromate transporter%2C long chain~PFAM: Chromate transporter gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1943 Alide2_1944 Alide2_1944 Alide2_1944 2044676 2045638 - Chromate resistance exported protein PFAM: Chromate resistance exported protein~KEGG: bxe:Bxe_C1207 putative chromate resistance protein gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1944 Alide2_1945 Alide2_1945 Alide2_1945 2046800 2047393 + Resolvase domain protein KEGG: bxe:Bxe_C1209 putative resolvase~PFAM: Resolvase%2C N-terminal%3B Protein of unknown function DUF932~SMART: Resolvase%2C N-terminal gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1945 Alide2_1946 Alide2_1946 Alide2_1946 2047432 2047752 - transposon modulator protein manually curated~KEGG: bxe:Bxe_C1210 transposon modulator protein gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1946 Alide2_1947 Alide2_1947 Alide2_1947 2047768 2048004 - MerE family protein PFAM: MerE~KEGG: bxe:Bxe_C1211 putative mercury resistance protein gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1947 Alide2_1948 Alide2_1948 Alide2_1948 2048001 2048366 - mercuric resistance transcriptional repressor protein MerD TIGRFAM: Mercuric resistence transcriptional repressor protein MerD~PFAM: HTH transcriptional regulator%2C MerR~KEGG: bxe:Bxe_C1212 transcriptional regulator MerD~SMART: HTH transcriptional regulator%2C MerR gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1948 Alide2_1949 Alide2_1949 Alide2_1949 2048384 2050069 - mercuric reductase TIGRFAM: Mercury reductase%2C MerA~KEGG: bxe:Bxe_C1213 putative mercuric reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Heavy metal transport/detoxification protein%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1949 Alide2_1950 Alide2_1950 Alide2_1950 2050108 2050533 - putative mercury transport protein MerC KEGG: mms:mma_1750 putative mercury transport protein MerC gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1950 Alide2_1951 Alide2_1951 Alide2_1951 2050561 2050836 - mercuric transport protein periplasmic component KEGG: mms:mma_1751 mercuric transport periplasmic binding protein~TIGRFAM: Mercuric transport protein periplasmic component~PFAM: Heavy metal transport/detoxification protein gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1951 Alide2_1952 Alide2_1952 Alide2_1952 2050850 2051200 - Mercuric transport protein MerT PFAM: Mercuric transport protein MerT~KEGG: bxe:Bxe_C1216 putative mercuric transport protein gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1952 Alide2_1953 Alide2_1953 Alide2_1953 2051272 2051706 + transcriptional regulator%2C MerR family TIGRFAM: Hg(II)-responsive transcriptional regulator~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~KEGG: bxe:Bxe_C1217 putative transcriptional regulator MerR~SMART: HTH transcriptional regulator%2C MerR gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1953 Alide2_1954 Alide2_1954 Alide2_1954 2051818 2052279 + pseudogene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1954 Alide2_1955 Alide2_1955 Alide2_1955 2052282 2055255 + pseudogene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1955 Alide2_1956 Alide2_1956 Alide2_1956 2055403 2055849 + integrating conjugative element protein%2C PFL_4709 family KEGG: rpf:Rpic12D_0686 protein of unknown function DUF1525~TIGRFAM: Integrating conjugative element protein%2C PFL4709~PFAM: Integrating conjugative element protein%2C PFL4709 gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1956 Alide2_1957 Alide2_1957 Alide2_1957 2055846 2056796 + integrating conjugative element protein%2C PFL_4710 family KEGG: rpf:Rpic12D_0687 protein of unknown function DUF1527~TIGRFAM: Integrating conjugative element protein%2C PFL4710~PFAM: Integrating conjugative element protein%2C PFL4710 gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1957 Alide2_1958 Alide2_1958 Alide2_1958 2056807 2058207 + integrating conjugative element protein%2C PFL_4711 family TIGRFAM: Integrating conjugative element protein%2C PFL4711~KEGG: rpf:Rpic12D_0688 hypothetical protein gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1958 Alide2_1959 Alide2_1959 Alide2_1959 2058207 2058566 + hypothetical protein KEGG: rpf:Rpic12D_0689 hypothetical protein gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1959 Alide2_1960 Alide2_1960 Alide2_1960 2058590 2060107 + hypothetical protein KEGG: rpf:Rpic12D_0690 hypothetical protein gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1960 Alide2_1961 Alide2_1961 Alide2_1961 2060108 2060479 - hypothetical protein KEGG: rpf:Rpic12D_0691 hypothetical protein gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1961 Alide2_1962 Alide2_1962 Alide2_1962 2060602 2061066 - hypothetical protein KEGG: dac:Daci_4188 hypothetical protein gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1962 Alide2_1963 Alide2_1963 Alide2_1963 2061066 2061383 - transcriptional regulator%2C AbrB family TIGRFAM: Transcription regulator AbrB~PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: dac:Daci_4189 AbrB family transcriptional regulator~SMART: Transcription regulator AbrB/SpoV%2C predicted gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1963 Alide2_1964 Alide2_1964 Alide2_1964 2061697 2063562 + integrating conjugative element relaxase%2C PFGI-1 class KEGG: rpf:Rpic12D_0694 relaxase~TIGRFAM: Integrating conjugative element relaxase%2C PFGI-1 class~PFAM: Uncharacterised protein family%2C helicase/relaxase%2C putative%3B Domain of unknown function DUF1528%2C C-terminal gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1964 Alide2_1965 Alide2_1965 Alide2_1965 2063589 2063894 - helix-turn-helix domain protein KEGG: rpf:Rpic12D_0695 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1965 Alide2_1966 Alide2_1966 Alide2_1966 2064013 2064633 + LysR substrate-binding protein PFAM: LysR%2C substrate-binding~KEGG: rpf:Rpic12D_0696 transcriptional regulator%2C LysR family gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1966 Alide2_1967 Alide2_1967 Alide2_1967 2064646 2066568 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: dac:Daci_4139 integrase family protein gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1967 Alide2_1968 Alide2_1968 Alide2_1968 2066998 2067540 - transcriptional regulator%2C BadM/Rrf2 family KEGG: ajs:Ajs_1664 BadM/Rrf2 family transcriptional regulator~TIGRFAM: Transcription regulator Rrf2~PFAM: Transcription regulator Rrf2 gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1968 Alide2_1969 Alide2_1969 Alide2_1969 2068159 2068419 + hypothetical protein KEGG: dia:Dtpsy_2037 hypothetical protein gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1969 Alide2_1970 Alide2_1970 Alide2_1970 2068431 2069306 - Phosphatidylserine decarboxylase proenzyme TIGRFAM: Phosphatidylserine decarboxylase~HAMAP: Phosphatidylserine decarboxylase~KEGG: dia:Dtpsy_2036 phosphatidylserine decarboxylase~PFAM: Phosphatidylserine decarboxylase-related gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1970 Alide2_1971 Alide2_1971 Alide2_1971 2069514 2070692 + CBS domain containing membrane protein manually curated~PFAM: Cystathionine beta-synthase%2C core%3B HPP~KEGG: ajs:Ajs_1669 CBS domain-containing protein~SMART: Cystathionine beta-synthase%2C core gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1971 Alide2_1972 Alide2_1972 Alide2_1972 2070940 2071200 + translation initiation factor IF-1 KEGG: dia:Dtpsy_2034 translation initiation factor IF-1~TIGRFAM: Translation initiation factor IF-1~PFAM: RNA-binding domain%2C S1%2C IF1 type gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1972 Alide2_1973 Alide2_1973 Alide2_1973 2071571 2072620 + diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted~KEGG: ajs:Ajs_4119 diguanylate cyclase~SMART: Diguanylate cyclase%2C predicted gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1973 Alide2_1974 Alide2_1974 Alide2_1974 2072626 2073399 + protein of unknown function DUF1624 PFAM: Protein of unknown function DUF1624~KEGG: ajs:Ajs_1672 hypothetical protein gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1974 Alide2_1975 Alide2_1975 Alide2_1975 2073411 2073713 - integration host factor%2C beta subunit TIGRFAM: Integration host factor%2C beta subunit~PFAM: Histone-like bacterial DNA-binding protein~KEGG: dia:Dtpsy_1390 integration host factor%2C beta subunit~SMART: Histone-like bacterial DNA-binding protein gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1975 Alide2_1976 Alide2_1976 Alide2_1976 2073833 2075518 - ribosomal protein S1 TIGRFAM: Ribosomal S1 synthesis/modification protein~PFAM: Ribosomal protein S1%2C RNA-binding domain~KEGG: dia:Dtpsy_1391 30S ribosomal protein S1~SMART: RNA-binding domain%2C S1 gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1976 Alide2_1977 Alide2_1977 Alide2_1977 2075699 2077723 - Cytidylate kinase PFAM: Enolpyruvate transferase domain%3B Cytidylate kinase domain~TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase%3B Cytidylate kinase~HAMAP: Cytidylate kinase%3B 3-phosphoshikimate 1-carboxyvinyltransferase~KEGG: dia:Dtpsy_1392 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1977 Alide2_1978 Alide2_1978 Alide2_1978 2077723 2078607 - Prephenate dehydrogenase KEGG: dia:Dtpsy_1393 prephenate dehydrogenase~PFAM: Prephenate dehydrogenase gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1978 Alide2_1979 Alide2_1979 Alide2_1979 2078618 2079718 - chorismate mutase TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein%2C chorismate mutase domain~PFAM: Prephenate dehydratase%3B Chorismate mutase%2C type II%3B Amino acid-binding ACT~KEGG: dia:Dtpsy_1394 chorismate mutase~SMART: Chorismate mutase gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1979 Alide2_1980 Alide2_1980 Alide2_1980 2079837 2080946 - Phosphoserine aminotransferase PFAM: Aminotransferase%2C class V/Cysteine desulfurase~TIGRFAM: Phosphoserine aminotransferase%2C subgroup~HAMAP: Phosphoserine aminotransferase~KEGG: dia:Dtpsy_1395 phosphoserine aminotransferase gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1980 Alide2_1981 Alide2_1981 Alide2_1981 2081013 2083703 - DNA gyrase%2C A subunit SMART: DNA topoisomerase%2C type IIA%2C subunit A/C-terminal~TIGRFAM: DNA gyrase%2C subunit A~KEGG: ajs:Ajs_2464 DNA gyrase subunit A~PFAM: DNA topoisomerase%2C type IIA%2C subunit A/C-terminal%3B DNA gyrase/topoisomerase IV%2C subunit A%2C C-terminal beta-pinwheel gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1981 Alide2_1982 Alide2_1982 Alide2_1982 2083880 2084539 + OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: dia:Dtpsy_1397 OmpA/MotB domain protein gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1982 Alide2_1983 Alide2_1983 Alide2_1983 2084619 2085332 + ubiquinone biosynthesis O-methyltransferase TIGRFAM: Ubiquinone biosynthesis O-methyltransferase~KEGG: dia:Dtpsy_1398 3-demethylubiquinone-9 3-methyltransferase~PFAM: Methyltransferase type 11 gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1983 Alide2_1984 Alide2_1984 Alide2_1984 2085329 2086006 + phosphoglycolate phosphatase TIGRFAM: 2-phosphoglycolate phosphatase%2C prokaryotic%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~KEGG: ajs:Ajs_2461 phosphoglycolate phosphatase~PFAM: Haloacid dehalogenase-like hydrolase gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1984 Alide2_1985 Alide2_1985 Alide2_1985 2086706 2087590 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: bvi:Bcep1808_7210 LysR family transcriptional regulator gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1985 Alide2_1986 Alide2_1986 Alide2_1986 2087587 2088597 - Phosphonate dehydrogenase KEGG: bvi:Bcep1808_7212 phosphonate dehydrogenase~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1986 Alide2_1987 Alide2_1987 Alide2_1987 2088622 2089419 - phosphonate ABC transporter%2C inner membrane subunit KEGG: mms:mma_3042 phosphonate ABC-type transport system permease protein~TIGRFAM: Phosphonate uptake transporter~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1987 Alide2_1988 Alide2_1988 Alide2_1988 2089432 2090292 - phosphonate ABC transporter%2C periplasmic phosphonate-binding protein TIGRFAM: Phosphonate-binding periplasmic protein~KEGG: mms:mma_3041 phosphonate ABC-type transport system substrate-binding protein gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1988 Alide2_1989 Alide2_1989 Alide2_1989 2090316 2091113 - phosphonate ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: ABC transporter%2C phosphonate import%2C PhnC~KEGG: mms:mma_3040 phosphonate ABC-type transport system ATP-binding protein~PFAM: ABC transporter-like gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1989 Alide2_1990 Alide2_1990 Alide2_1990 2091367 2092086 + Domain of unknown function DUF88 PFAM: Domain of unknown function DUF88~KEGG: cvi:CV_0373 hypothetical protein gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1990 Alide2_1991 Alide2_1991 Alide2_1991 2092184 2092663 - putative bacteriophage-related protein KEGG: rsl:RPSI07_0201 putative bacteriophage-related protein gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1991 Alide2_1992 Alide2_1992 Alide2_1992 2092660 2093031 - putative bacteriophage-related protein KEGG: rsl:RPSI07_0202 putative bacteriophage-related protein gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1992 Alide2_1993 Alide2_1993 Alide2_1993 2093031 2094410 - Resolvase domain protein KEGG: nde:NIDE0070 putative site-specific recombinase%2C resolvase family (phage related)~PFAM: Resolvase%2C N-terminal%3B Recombinase~SMART: Resolvase%2C N-terminal gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1993 Alide2_1994 Alide2_1994 Alide2_1994 2094407 2094856 - hypothetical protein KEGG: mfa:Mfla_1156 hypothetical protein gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1994 Alide2_1995 Alide2_1995 Alide2_1995 2094856 2095047 - hypothetical protein KEGG: mfa:Mfla_1157 hypothetical protein gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1995 Alide2_1996 Alide2_1996 Alide2_1996 2095228 2095506 + helix-turn-helix domain protein KEGG: sml:Smlt1898 putative HTH transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1996 Alide2_1997 Alide2_1997 Alide2_1997 2095507 2096319 + hypothetical protein KEGG: nde:NIDE0076 hypothetical protein gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1997 Alide2_1998 Alide2_1998 Alide2_1998 2096420 2097844 + hypothetical protein KEGG: nde:NIDE0077 hypothetical protein gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1998 Alide2_1999 Alide2_1999 Alide2_1999 2097856 2098794 + hypothetical protein KEGG: nde:NIDE0078 hypothetical protein gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_1999 Alide2_2000 Alide2_2000 Alide2_2000 2098880 2099137 + hypothetical protein KEGG: mca:MCA2640 hypothetical protein gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2000 Alide2_2001 Alide2_2001 Alide2_2001 2099149 2099631 + hypothetical protein KEGG: mms:mma_2689 hypothetical protein gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2001 Alide2_2002 Alide2_2002 Alide2_2002 2099628 2100476 + hypothetical protein KEGG: nde:NIDE0081 hypothetical protein gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2002 Alide2_2003 Alide2_2003 Alide2_2003 2100482 2101105 + hypothetical protein KEGG: dia:Dtpsy_3225 hypothetical protein gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2003 Alide2_2004 Alide2_2004 Alide2_2004 2101117 2101971 + Domain of unknown function P63C-containing protein PFAM: Uncharacterised protein domain P63C~KEGG: nde:NIDE0083 hypothetical protein gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2004 Alide2_2005 Alide2_2005 Alide2_2005 2101968 2102468 + hypothetical protein KEGG: nde:NIDE0084 hypothetical protein gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2005 Alide2_2006 Alide2_2006 Alide2_2006 2102465 2103199 + hypothetical protein KEGG: dia:Dtpsy_3223 hypothetical protein gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2006 Alide2_2007 Alide2_2007 Alide2_2007 2103196 2103441 + hypothetical protein KEGG: nde:NIDE0086 hypothetical protein gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2007 Alide2_2008 Alide2_2008 Alide2_2008 2103438 2105738 + phage/plasmid primase%2C P4 family TIGRFAM: DNA primase%2C phage/plasmid~PFAM: Phage/plasmid primase%2C P4%2C C-terminal~KEGG: dia:Dtpsy_3221 hypothetical protein~SMART: Phage/plasmid primase%2C P4%2C C-terminal gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2008 Alide2_2009 Alide2_2009 Alide2_2009 2105880 2106356 + hypothetical protein KEGG: dia:Dtpsy_3220 hypothetical protein gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2009 Alide2_2010 Alide2_2010 Alide2_2010 2106358 2106561 + hypothetical protein KEGG: mms:mma_2698 hypothetical protein gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2010 Alide2_2011 Alide2_2011 Alide2_2011 2106554 2106970 + hypothetical protein KEGG: sml:Smlt1883 hypothetical protein gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2011 Alide2_2012 Alide2_2012 Alide2_2012 2107316 2108731 + DNA methylase N-4/N-6 domain protein KEGG: dia:Dtpsy_3217 DNA methylase N-4/N-6 domain protein~PFAM: DNA methylase N-4/N-6%3B ParB-like nuclease~SMART: ParB-like nuclease gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2012 Alide2_2013 Alide2_2013 Alide2_2013 2108728 2109990 + DNA methylase N-4/N-6 domain protein KEGG: dia:Dtpsy_3216 DNA methylase N-4/N-6 domain protein~PFAM: DNA methylase N-4/N-6%3B ParB-like nuclease~SMART: ParB-like nuclease gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2013 Alide2_2014 Alide2_2014 Alide2_2014 2109954 2110322 - hypothetical protein KEGG: mms:mma_2759 hypothetical protein gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2014 Alide2_2015 Alide2_2015 Alide2_2015 2110420 2110941 - hypothetical protein KEGG: mms:mma_2762 hypothetical protein gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2015 Alide2_2016 Alide2_2016 Alide2_2016 2111037 2111243 - hypothetical protein KEGG: dia:Dtpsy_3211 hypothetical protein gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2016 Alide2_2017 Alide2_2017 Alide2_2017 2111350 2111895 + hypothetical protein KEGG: sml:Smlt1874 hypothetical protein gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2017 Alide2_2018 Alide2_2018 Alide2_2018 2111895 2113853 + terminase GpA PFAM: Phage terminase GpA~KEGG: dia:Dtpsy_3209 terminase GpA gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2018 Alide2_2019 Alide2_2019 Alide2_2019 2113883 2114374 + hypothetical protein KEGG: mms:mma_2706 hypothetical protein gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2019 Alide2_2020 Alide2_2020 Alide2_2020 2114374 2114766 + hypothetical protein KEGG: mms:mma_2767 hypothetical protein gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2020 Alide2_2021 Alide2_2021 Alide2_2021 2114766 2114987 + hypothetical protein KEGG: rsl:RPSI07_0240 hypothetical protein gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2021 Alide2_2022 Alide2_2022 Alide2_2022 2114989 2116503 + phage portal protein%2C lambda family manually curated~TIGRFAM: Phage portal protein%2C lambda~KEGG: dia:Dtpsy_3207 phage portal protein%2C lambda family~PFAM: Phage portal protein%2C lambda gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2022 Alide2_2023 Alide2_2023 Alide2_2023 2116537 2117778 + peptidase S49 PFAM: Peptidase S49~KEGG: dia:Dtpsy_3206 peptidase S49 gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2023 Alide2_2024 Alide2_2024 Alide2_2024 2117780 2118157 + hypothetical protein KEGG: dia:Dtpsy_3205 hypothetical protein gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2024 Alide2_2025 Alide2_2025 Alide2_2025 2118160 2119164 + hypothetical protein KEGG: dia:Dtpsy_3204 hypothetical protein gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2025 Alide2_2026 Alide2_2026 Alide2_2026 2119164 2119466 + hypothetical protein KEGG: dia:Dtpsy_3203 hypothetical protein gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2026 Alide2_2027 Alide2_2027 Alide2_2027 2119471 2119917 + hypothetical protein KEGG: dia:Dtpsy_3202 signal peptide protein gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2027 Alide2_2028 Alide2_2028 Alide2_2028 2119923 2120144 + hypothetical protein KEGG: dia:Dtpsy_3201 hypothetical protein gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2028 Alide2_2029 Alide2_2029 Alide2_2029 2120141 2120893 + hypothetical protein KEGG: dia:Dtpsy_3200 hypothetical protein gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2029 Alide2_2030 Alide2_2030 Alide2_2030 2120905 2121303 + hypothetical protein KEGG: dia:Dtpsy_3199 hypothetical protein gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2030 Alide2_2031 Alide2_2031 Alide2_2031 2121300 2121509 + hypothetical protein manually curated~KEGG: rso:RSc0865 hypothetical protein gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2031 Alide2_2032 Alide2_2032 Alide2_2032 2121484 2122128 + hypothetical protein KEGG: dia:Dtpsy_3198 hypothetical protein gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2032 Alide2_2033 Alide2_2033 Alide2_2033 2122130 2126167 + phage tape measure protein TIGRFAM: Tape measure domain~KEGG: dia:Dtpsy_3197 phage tape measure protein gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2033 Alide2_2034 Alide2_2034 Alide2_2034 2126204 2126614 + hypothetical protein KEGG: dia:Dtpsy_3196 hypothetical protein gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2034 Alide2_2035 Alide2_2035 Alide2_2035 2126614 2130222 + hypothetical protein KEGG: dia:Dtpsy_3195 hypothetical protein gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2035 Alide2_2036 Alide2_2036 Alide2_2036 2130270 2131535 + hypothetical protein KEGG: dia:Dtpsy_3194 hypothetical protein gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2036 Alide2_2037 Alide2_2037 Alide2_2037 2131539 2132624 + hypothetical protein KEGG: mca:MCA2674 hypothetical protein gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2037 Alide2_2038 Alide2_2038 Alide2_2038 2132621 2133016 + hypothetical protein KEGG: mca:MCA2675 hypothetical protein gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2038 Alide2_2039 Alide2_2039 Alide2_2039 2133020 2135047 + hypothetical protein KEGG: dia:Dtpsy_3191 hypothetical protein gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2039 Alide2_2040 Alide2_2040 Alide2_2040 2135040 2135261 + hypothetical protein KEGG: dia:Dtpsy_3190 hypothetical protein gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2040 Alide2_2041 Alide2_2041 Alide2_2041 2135328 2135633 + hypothetical protein KEGG: mms:mma_2786 hypothetical protein gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2041 Alide2_2042 Alide2_2042 Alide2_2042 2135630 2135857 + hypothetical protein KEGG: nde:NIDE0123 hypothetical protein gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2042 Alide2_2043 Alide2_2043 Alide2_2043 2135854 2136354 + glycoside hydrolase family 24 PFAM: Glycoside hydrolase%2C family 24~KEGG: sml:Smlt1851 putative glycosidase gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2043 Alide2_2044 Alide2_2044 Alide2_2044 2136351 2136848 + hypothetical protein KEGG: nde:NIDE0125 hypothetical protein gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2044 Alide2_2045 Alide2_2045 Alide2_2045 2136957 2137247 + hypothetical protein KEGG: rso:RSc3214 hypothetical protein gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2045 Alide2_2046 Alide2_2046 Alide2_2046 2137252 2138199 - protein of unknown function DUF511 PFAM: Protein of unknown function DUF511~KEGG: dno:DNO_0218 hypothetical protein gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2046 Alide2_2047 Alide2_2047 Alide2_2047 2138212 2138988 - hypothetical protein KEGG: bav:BAV0365 hypothetical protein gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2047 Alide2_2048 Alide2_2048 Alide2_2048 2138993 2139532 - hypothetical protein manually curated~KEGG: pol:Bpro_1539 hypothetical protein gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2048 Alide2_2049 Alide2_2049 Alide2_2049 2139540 2142611 - Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III KEGG: xfm:Xfasm12_2267 type I restriction-modification system endonuclease~PFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~SMART: DEAD-like helicase%2C N-terminal gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2049 Alide2_2050 Alide2_2050 Alide2_2050 2142598 2144022 - hypothetical protein KEGG: mca:MCA0277 hypothetical protein gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2050 Alide2_2051 Alide2_2051 Alide2_2051 2144022 2146406 - N-6 DNA methylase PFAM: DNA methylase%2C adenine-specific~KEGG: xfn:XfasM23_2177 N-6 DNA methylase gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2051 Alide2_2052 Alide2_2052 Alide2_2052 2146418 2148136 - protein of unknown function DUF262 PFAM: Domain of unknown function DUF262%3B Domain of unknown function DUF1524 RloF~KEGG: gca:Galf_1217 hypothetical protein gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2052 Alide2_2053 Alide2_2053 Alide2_2053 2148152 2149051 - hypothetical protein KEGG: vei:Veis_2419 hypothetical protein gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2053 Alide2_2054 Alide2_2054 Alide2_2054 2149260 2149664 + glycoside hydrolase family 24 PFAM: Glycoside hydrolase%2C family 24~KEGG: mms:mma_2788 phage-related lysozyme gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2054 Alide2_2055 Alide2_2055 Alide2_2055 2149746 2150900 - peptidase S1 and S6 chymotrypsin/Hap KEGG: mfa:Mfla_1158 DegP2 peptidase~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF~SMART: PDZ/DHR/GLGF gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2055 Alide2_2056 Alide2_2056 Alide2_2056 2150924 2151889 - peptidase M48 Ste24p PFAM: Peptidase M48~KEGG: mfa:Mfla_1159 peptidase M48%2C Ste24p gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2056 Alide2_2057 Alide2_2057 Alide2_2057 2151897 2152367 - hypothetical protein KEGG: mfa:Mfla_1160 hypothetical protein gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2057 Alide2_2058 Alide2_2058 Alide2_2058 2152443 2152883 - thioredoxin TIGRFAM: Thioredoxin~KEGG: dde:Dde_3416 thioredoxin~PFAM: Thioredoxin domain gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2058 Alide2_2059 Alide2_2059 Alide2_2059 2152880 2154763 - ATP-dependent metalloprotease FtsH SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Peptidase M41%2C FtsH~KEGG: dde:Dde_3415 FtsH-2 peptidase~PFAM: Peptidase M41%3B ATPase%2C AAA-type%2C core%3B Peptidase M41%2C FtsH extracellular gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2059 Alide2_2060 Alide2_2060 Alide2_2060 2154791 2156221 - phospholipase D/Transphosphatidylase KEGG: rpf:Rpic12D_0625 phospholipase D/transphosphatidylase~PFAM: Phospholipase D/Transphosphatidylase~SMART: Phospholipase D/Transphosphatidylase gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2060 Alide2_2061 Alide2_2061 Alide2_2061 2156239 2159088 - ATPase AAA-2 domain protein KEGG: mfa:Mfla_1170 ATPase AAA-2~PFAM: ATPase%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp%2C N-terminal%3B Clp ATPase%2C C-terminal~SMART: ATPase%2C AAA+ type%2C core gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2061 Alide2_2062 Alide2_2062 Alide2_2062 2159182 2159751 - heat shock protein Hsp20 PFAM: Heat shock protein Hsp20~KEGG: rpf:Rpic12D_0629 heat shock protein HSP20 gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2062 Alide2_2063 Alide2_2063 Alide2_2063 2159784 2160065 - DNA binding domain protein%2C excisionase family manually curated~TIGRFAM: Excisionase/Xis%2C DNA-binding~KEGG: mfa:Mfla_1172 phage transcriptional regulator%2C AlpA~PFAM: Prophage CP4-57 regulatory gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2063 Alide2_2064 Alide2_2064 Alide2_2064 2160293 2160457 - pseudogene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2064 Alide2_2065 Alide2_2065 Alide2_2065 2160805 2161476 - protein of unknown function DUF159 PFAM: Protein of unknown function DUF159~KEGG: tin:Tint_2914 protein of unknown function DUF159 gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2065 Alide2_2066 Alide2_2066 Alide2_2066 2161532 2162017 + Peptidase S24/S26A/S26B%2C conserved region PFAM: Peptidase S24/S26A/S26B%2C conserved region~KEGG: tin:Tint_2913 peptidase S24/S26A/S26B%2C conserved region gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2066 Alide2_2067 Alide2_2067 Alide2_2067 2162017 2163303 + DNA-directed DNA polymerase KEGG: tin:Tint_2912 DNA-directed DNA polymerase~PFAM: DNA-repair protein%2C UmuC-like gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2067 Alide2_2068 Alide2_2068 Alide2_2068 2163300 2163764 - hypothetical protein KEGG: mca:MCA2632 hypothetical protein gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2068 Alide2_2069 Alide2_2069 Alide2_2069 2163761 2164147 - site-specific recombinase resolvase family protein%2C truncation KEGG: mca:MCA2633 prophage LambdaMc01%2C site-specific recombinase resolvase family protein%2C truncation gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2069 Alide2_2070 Alide2_2070 Alide2_2070 2164144 2165523 - Resolvase domain protein KEGG: mca:MCA2634 prophage LambdaMc01%2C site-specific recombinase resolvase family protein~PFAM: Resolvase%2C N-terminal%3B Recombinase~SMART: Resolvase%2C N-terminal gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2070 Alide2_2071 Alide2_2071 Alide2_2071 2165523 2165969 - Protein of unknown function DUF2924 PFAM: Protein of unknown function DUF2924~KEGG: mca:MCA2635 hypothetical protein gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2071 Alide2_2072 Alide2_2072 Alide2_2072 2165966 2166160 - hypothetical protein KEGG: mca:MCA2636 hypothetical protein gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2072 Alide2_2073 Alide2_2073 Alide2_2073 2166340 2166618 + helix-turn-helix domain protein KEGG: sml:Smlt1898 putative HTH transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2073 Alide2_2074 Alide2_2074 Alide2_2074 2166619 2166882 + hypothetical protein KEGG: nde:NIDE0076 hypothetical protein gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2074 Alide2_2075 Alide2_2075 Alide2_2075 2166892 2167005 - pseudogene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2075 Alide2_2076 Alide2_2076 Alide2_2076 2167055 2167378 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2076 Alide2_2077 Alide2_2077 Alide2_2077 2167375 2168289 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2077 Alide2_2078 Alide2_2078 Alide2_2078 2168352 2169278 - Glutaminase PFAM: Glutaminase~TIGRFAM: Glutaminase~HAMAP: Glutaminase~KEGG: atu:Atu1859 glutaminase gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2078 Alide2_2079 Alide2_2079 Alide2_2079 2169282 2170469 - amidohydrolase TIGRFAM: Peptidase M20D%2C amidohydrolase~KEGG: pol:Bpro_4523 peptidase M20D%2C amidohydrolase~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2079 Alide2_2080 Alide2_2080 Alide2_2080 2170507 2171847 - General substrate transporter PFAM: General substrate transporter~KEGG: rme:Rmet_5758 major facilitator protein family permease gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2080 Alide2_2081 Alide2_2081 Alide2_2081 2171974 2172876 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: pol:Bpro_4525 LysR family transcriptional regulator gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2081 Alide2_2082 Alide2_2082 Alide2_2082 2172945 2173742 - hypothetical protein KEGG: sde:Sde_2785 hypothetical protein gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2082 Alide2_2083 Alide2_2083 Alide2_2083 2173877 2174371 - acetyltransferase%2C GNAT family manually curated~KEGG: afr:AFE_1417 acetyltransferase%2C GNAT family gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2083 Alide2_2084 Alide2_2084 Alide2_2084 2174368 2174634 - protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: afr:AFE_1418 hypothetical protein gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2084 Alide2_2085 Alide2_2085 Alide2_2085 2174865 2176121 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: ajs:Ajs_1692 major facilitator superfamily transporter gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2085 Alide2_2086 Alide2_2086 Alide2_2086 2176305 2177096 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: dia:Dtpsy_2008 gluconate 5-dehydrogenase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2086 Alide2_2087 Alide2_2087 Alide2_2087 2177160 2177585 + phenylacetic acid degradation-related protein KEGG: ajs:Ajs_1696 hypothetical protein~TIGRFAM: Phenylacetic acid degradation-related protein~PFAM: Thioesterase superfamily gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2087 Alide2_2088 Alide2_2088 Alide2_2088 2177679 2178695 + 2-alkenal reductase PFAM: Alcohol dehydrogenase%2C C-terminal~KEGG: ajs:Ajs_1697 alcohol dehydrogenase~SMART: Polyketide synthase%2C enoylreductase gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2088 Alide2_2089 Alide2_2089 Alide2_2089 2178772 2179695 + putative glutathione S-transferase-related protein KEGG: ajs:Ajs_1699 putative glutathione S-transferase-related protein gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2089 Alide2_2090 Alide2_2090 Alide2_2090 2179775 2180368 - protein of unknown function DUF1566 PFAM: Protein of unknown function DUF1566~KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566 gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2090 Alide2_2091 Alide2_2091 Alide2_2091 2180857 2182260 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: ajs:Ajs_1703 major facilitator superfamily transporter gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2091 Alide2_2092 Alide2_2092 Alide2_2092 2182260 2183735 + Deoxyribodipyrimidine photo-lyase KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I~PFAM: DNA photolyase%2C FAD-binding/Cryptochrome%2C C-terminal%3B DNA photolyase%2C N-terminal gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2092 Alide2_2093 Alide2_2093 Alide2_2093 2183740 2184300 - hypothetical protein KEGG: ajs:Ajs_1629 hypothetical protein gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2093 Alide2_2094 Alide2_2094 Alide2_2094 2184281 2186641 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase PFAM: Methionine synthase%2C vitamin-B12 independent%3B Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal~TIGRFAM: Cobalamin-independent methionine synthase~HAMAP: Cobalamin-independent methionine synthase~KEGG: ajs:Ajs_1630 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2094 Alide2_2095 Alide2_2095 Alide2_2095 2186750 2187676 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_1631 LysR family transcriptional regulator gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2095 Alide2_2096 Alide2_2096 Alide2_2096 2187792 2187959 + hypothetical protein gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2096 Alide2_2097 Alide2_2097 Alide2_2097 2187975 2189645 + pseudogene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2097 Alide2_2098 Alide2_2098 Alide2_2098 2189638 2189964 + hypothetical protein KEGG: dac:Daci_3076 hypothetical protein gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2098 Alide2_2099 Alide2_2099 Alide2_2099 2189983 2190504 - Protein of unknown function DUF3016 PFAM: Protein of unknown function DUF3016~KEGG: dac:Daci_0667 hypothetical protein gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2099 Alide2_2100 Alide2_2100 Alide2_2100 2190611 2191471 - Methylisocitrate lyase KEGG: dac:Daci_3579 PEP phosphonomutase~PFAM: Isocitrate lyase/phosphorylmutase gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2100 Alide2_2101 Alide2_2101 Alide2_2101 2191633 2192796 - AcnD-accessory protein PrpF KEGG: dac:Daci_3586 AcnD-accessory protein PrpF~TIGRFAM: PrpF%2C AcnD-accessory~PFAM: PrpF protein gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2101 Alide2_2102 Alide2_2102 Alide2_2102 2192824 2195427 - 2-methylisocitrate dehydratase%2C Fe/S-dependent TIGRFAM: 2-methylisocitrate dehydratase AcnD%2C Fe/S-dependent~KEGG: dia:Dtpsy_2080 aconitate hydratase~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%3B Aconitase A/isopropylmalate dehydratase small subunit%2C swivel gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2102 Alide2_2103 Alide2_2103 Alide2_2103 2195447 2196607 - 2-methylcitrate synthase/citrate synthase II TIGRFAM: 2-methylcitrate synthase/citrate synthase type I~KEGG: ajs:Ajs_1635 methylcitrate synthase~PFAM: Citrate synthase-like gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2103 Alide2_2104 Alide2_2104 Alide2_2104 2196604 2196999 - thioesterase superfamily protein KEGG: dia:Dtpsy_2078 thioesterase superfamily protein~manually curated~PFAM: Thioesterase superfamily gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2104 Alide2_2105 Alide2_2105 Alide2_2105 2197102 2198562 + transcriptional regulator%2C XRE family KEGG: ajs:Ajs_1637 XRE family transcriptional regulator~PFAM: Protein of unknown function DUF2083%2Ctranscriptional regulator%3B Helix-turn-helix type 3%3B Protein of unknown function DUF955~SMART: Helix-turn-helix type 3 gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2105 Alide2_2106 Alide2_2106 Alide2_2106 2198674 2199582 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: cti:RALTA_B2225 putative transcription regulator%2C LysR family gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2106 Alide2_2107 Alide2_2107 Alide2_2107 2199712 2200095 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: cti:RALTA_B2224 putative metallothiol transferase gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2107 Alide2_2108 Alide2_2108 Alide2_2108 2200145 2201212 + hypothetical protein KEGG: hse:Hsero_2301 hypothetical protein gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2108 Alide2_2109 Alide2_2109 Alide2_2109 2201219 2201665 - RNA-binding S4 domain protein KEGG: ajs:Ajs_1639 RNA-binding S4 domain-containing protein~PFAM: RNA-binding S4~SMART: RNA-binding S4 gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2109 Alide2_2110 Alide2_2110 Alide2_2110 2201688 2203091 - integral membrane sensor signal transduction histidine kinase KEGG: dia:Dtpsy_2074 histidine kinase~PFAM: Two-component sensor kinase N-terminal%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B ATPase-like%2C ATP-binding domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2110 Alide2_2111 Alide2_2111 Alide2_2111 2203088 2203771 - two component transcriptional regulator%2C winged helix family KEGG: ajs:Ajs_1641 two component transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2111 Alide2_2112 Alide2_2112 Alide2_2112 2203914 2204873 + hypothetical protein KEGG: dia:Dtpsy_2072 hypothetical protein gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2112 Alide2_2113 Alide2_2113 Alide2_2113 2205010 2205564 + hypothetical protein KEGG: dia:Dtpsy_2071 hypothetical protein gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2113 Alide2_2114 Alide2_2114 Alide2_2114 2205564 2207093 + protein of unknown function DUF112 transmembrane PFAM: Protein of unknown function DUF112%2C transmembrane~KEGG: ajs:Ajs_1644 hypothetical protein gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2114 Alide2_2115 Alide2_2115 Alide2_2115 2207159 2209348 + Hydroxybutyrate-dimer hydrolase KEGG: dia:Dtpsy_2060 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane~PFAM: D-(-)-3-hydroxybutyrate oligomer hydrolase%2C putative gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2115 Alide2_2116 Alide2_2116 Alide2_2116 2209666 2210253 - putative lipoprotein KEGG: ctt:CtCNB1_3704 putative lipoprotein gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2116 Alide2_2117 Alide2_2117 Alide2_2117 2210438 2210605 - hypothetical protein KEGG: dia:Dtpsy_2056 hypothetical protein gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2117 Alide2_2118 Alide2_2118 Alide2_2118 2210619 2211716 - protein of unknown function DUF395 YeeE/YedE PFAM: Domain of unknown function DUF395%2C YeeE/YedE~KEGG: ajs:Ajs_1649 protein of unknown function DUF395%2C YeeE/YedE gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2118 Alide2_2119 Alide2_2119 Alide2_2119 2211811 2212755 - Rhodanese-like protein KEGG: dia:Dtpsy_2054 rhodanese domain protein~PFAM: Rhodanese-like~SMART: Rhodanese-like gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2119 Alide2_2120 Alide2_2120 Alide2_2120 2212870 2213865 - ferrochelatase TIGRFAM: Ferrochelatase~KEGG: ajs:Ajs_1652 ferrochelatase~PFAM: Ferrochelatase gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2120 Alide2_2121 Alide2_2121 Alide2_2121 2213884 2214609 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: dac:Daci_2563 HAD family hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~PFAM: Haloacid dehalogenase-like hydrolase gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2121 Alide2_2122 Alide2_2122 Alide2_2122 2214581 2217337 - ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC SMART: ATPase%2C P-type cation-transporter%2C N-terminal~TIGRFAM: ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: dia:Dtpsy_2050 ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B ATPase%2C P-type cation-transporter%2C N-terminal%3B Haloacid dehalogenase-like hydrolase%3B ATPase%2C P-type cation-transporter%2C C-terminal gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2122 Alide2_2123 Alide2_2123 Alide2_2123 2217516 2218322 - alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2123 Alide2_2124 Alide2_2124 Alide2_2124 2218322 2219623 - O-acetylhomoserine/O-acetylserine sulfhydrylase TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase~KEGG: ajs:Ajs_1656 O-acetylhomoserine aminocarboxypropyltransferase~PFAM: Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2124 Alide2_2125 Alide2_2125 Alide2_2125 2219739 2220194 + CBS domain containing protein KEGG: dia:Dtpsy_2047 CBS domain containing protein~PFAM: Cystathionine beta-synthase%2C core~SMART: Cystathionine beta-synthase%2C core gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2125 Alide2_2126 Alide2_2126 Alide2_2126 2220288 2221382 + chorismate synthase TIGRFAM: Chorismate synthase~KEGG: dia:Dtpsy_2046 chorismate synthase~PFAM: Chorismate synthase gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2126 Alide2_2127 Alide2_2127 Alide2_2127 2221444 2221893 - Ribonucleotide reductase regulator NrdR-like protein KEGG: dia:Dtpsy_2045 transcriptional regulator NrdR~TIGRFAM: Ribonucleotide reductase regulator NrdR-like~PFAM: ATP-cone gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2127 Alide2_2128 Alide2_2128 Alide2_2128 2221919 2223163 - Glycine hydroxymethyltransferase KEGG: dia:Dtpsy_2044 serine hydroxymethyltransferase~PFAM: Serine hydroxymethyltransferase gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2128 Alide2_2129 Alide2_2129 Alide2_2129 2223405 2224217 - Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: dia:Dtpsy_2043 lytic transglycosylase catalytic gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2129 Alide2_2130 Alide2_2130 Alide2_2130 2224935 2228693 + protein of unknown function DUF748 PFAM: Protein of unknown function DUF748%3B Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: ajs:Ajs_1662 hypothetical protein gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2130 Alide2_2131 Alide2_2131 Alide2_2131 2228917 2231514 + protein of unknown function DUF349 PFAM: Protein of unknown function DUF349~KEGG: dia:Dtpsy_2041 hypothetical protein gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2131 Alide2_2132 Alide2_2132 Alide2_2132 2231992 2234283 + ribonuclease R SMART: Ribonuclease II/R%3B Cold shock protein%3B RNA-binding domain%2C S1~manually curated~KEGG: dia:Dtpsy_1240 ribonuclease R~TIGRFAM: Ribonuclease R%2C bacterial%3B Ribonuclease II/ribonuclease R%2C bacteria~PFAM: Ribonuclease II/R%3B Ribonuclease B%2C N-terminal OB domain%3B Ribosomal protein S1%2C RNA-binding domain gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2132 Alide2_2133 Alide2_2133 Alide2_2133 2234306 2235061 + short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: dia:Dtpsy_1241 short-chain dehydrogenase/reductase SDR gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2133 Alide2_2134 Alide2_2134 Alide2_2134 2235152 2235802 + cytochrome c553-like protein KEGG: aav:Aave_3388 cytochrome c553-like protein gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2134 Alide2_2135 Alide2_2135 Alide2_2135 2235799 2237088 + Gluconate 2-dehydrogenase (acceptor) KEGG: aav:Aave_3387 cytochrome c%2C class I~PFAM: Cytochrome c%2C class I gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2135 Alide2_2136 Alide2_2136 Alide2_2136 2237109 2237492 + Thioredoxin domain-containing protein PFAM: Thioredoxin domain~KEGG: dia:Dtpsy_1244 hypothetical protein gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2136 Alide2_2137 Alide2_2137 Alide2_2137 2237693 2238283 + Ribosome maturation factor rimP KEGG: dia:Dtpsy_1245 hypothetical protein~HAMAP: Ribosome maturation factor RimP~PFAM: Ribosome maturation factor RimP gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2137 Alide2_2138 Alide2_2138 Alide2_2138 2238352 2239836 + NusA antitermination factor TIGRFAM: Transcription termination factor NusA%3B Transcription termination factor NusA%2C C-terminal duplication~PFAM: Transcription factor NusA%2C N-terminal%3B Ribosomal protein S1%2C RNA-binding domain~KEGG: dia:Dtpsy_1246 NusA antitermination factor~SMART: RNA-binding domain%2C S1%3B K Homology gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2138 Alide2_2139 Alide2_2139 Alide2_2139 2239861 2242692 + translation initiation factor IF-2 KEGG: dia:Dtpsy_1247 translation initiation factor IF-2~TIGRFAM: Translation initiation factor aIF-2%2C bacterial-like%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Initiation factor 2 associated region%2C bacterial%3B Translation initiation factor IF-2%2C N-terminal%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation initiation factor IF- 2%2C domain 3 gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2139 Alide2_2140 Alide2_2140 Alide2_2140 2242696 2243076 + ribosome-binding factor A KEGG: aav:Aave_3382 ribosome-binding factor A~TIGRFAM: Ribosome-binding factor A~PFAM: Ribosome-binding factor A gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2140 Alide2_2141 Alide2_2141 Alide2_2141 2243069 2244073 + tRNA pseudouridine synthase B TIGRFAM: tRNA pseudouridine synthase II%2C TruB~HAMAP: tRNA pseudouridine synthase II%2C TruB~KEGG: ajs:Ajs_2559 tRNA pseudouridine synthase B~PFAM: Pseudouridine synthase II gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2141 Alide2_2142 Alide2_2142 Alide2_2142 2244070 2245899 + GTP-binding protein TypA KEGG: ajs:Ajs_2558 GTP-binding protein TypA~TIGRFAM: GTP-binding protein TypA%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C C-terminal gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2142 Alide2_2143 Alide2_2143 Alide2_2143 2245967 2246845 - hypothetical protein KEGG: vap:Vapar_3272 hypothetical protein gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2143 Alide2_2144 Alide2_2144 Alide2_2144 2247179 2248270 + 3-hydroxyisobutyryl-CoA hydrolase KEGG: ajs:Ajs_2556 3-hydroxyisobutyryl-CoA hydrolase~PFAM: Crotonase%2C core gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2144 Alide2_2145 Alide2_2145 Alide2_2145 2248221 2249063 - putative transmembrane anti-sigma factor KEGG: ajs:Ajs_2555 putative transmembrane anti-sigma factor gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2145 Alide2_2146 Alide2_2146 Alide2_2146 2249088 2249612 - RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: dia:Dtpsy_1254 RNA polymerase%2C sigma-24 subunit%2C ECF subfamily~TIGRFAM: RNA polymerase sigma-70~PFAM: RNA polymerase sigma factor 70%2C region 4 type 2%3B RNA polymerase sigma-70 region 2 gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2146 Alide2_2147 Alide2_2147 Alide2_2147 2249629 2249994 - secreted repeat of unknown function KEGG: dia:Dtpsy_1255 secreted repeat of unknown function gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2147 Alide2_2148 Alide2_2148 Alide2_2148 2250094 2250567 - SsrA-binding protein KEGG: dia:Dtpsy_1256 SsrA-binding protein~TIGRFAM: SsrA-binding protein~PFAM: SsrA-binding protein gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2148 Alide2_2149 Alide2_2149 Alide2_2149 2250714 2251154 + cyclase/dehydrase PFAM: Streptomyces cyclase/dehydrase~KEGG: dia:Dtpsy_1257 cyclase/dehydrase gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2149 Alide2_2150 Alide2_2150 Alide2_2150 2251164 2251490 + protein of unknown function UPF0125 PFAM: Uncharacterised protein family UPF0125~KEGG: ajs:Ajs_2550 hypothetical protein gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2150 Alide2_2151 Alide2_2151 Alide2_2151 2251499 2252002 - hypothetical protein KEGG: ajs:Ajs_2549 hypothetical protein gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2151 Alide2_2152 Alide2_2152 Alide2_2152 2252096 2253571 + inosine-5'-monophosphate dehydrogenase SMART: Cystathionine beta-synthase%2C core~TIGRFAM: IMP dehydrogenase~KEGG: dia:Dtpsy_1260 inosine-5'-monophosphate dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase%3B Cystathionine beta-synthase%2C core gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2152 Alide2_2153 Alide2_2153 Alide2_2153 2253645 2255261 + GMP synthase%2C large subunit TIGRFAM: GMP synthase%2C C-terminal%3B GMP synthase%2C N-terminal~KEGG: dac:Daci_3013 GMP synthase~PFAM: GMP synthase%2C C-terminal%3B Glutamine amidotransferase class-I%2C C-terminal%3B NAD/GMP synthase gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2153 Alide2_2154 Alide2_2154 Alide2_2154 2255650 2257176 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: axy:AXYL_06593 integrase family protein 10 gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2154 Alide2_2155 Alide2_2155 Alide2_2155 2257166 2257969 + IstB domain protein ATP-binding protein KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2155 Alide2_2156 Alide2_2156 Alide2_2156 2258020 2258808 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: bpt:Bpet1499 putative integrase/recombinase gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2156 Alide2_2157 Alide2_2157 Alide2_2157 2258805 2260064 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage~KEGG: bpt:Bpet1498 putative integrase/recombinase gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2157 Alide2_2158 Alide2_2158 Alide2_2158 2260204 2260365 + pseudogene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2158 Alide2_2159 Alide2_2159 Alide2_2159 2260648 2260998 + putative transposon protein KEGG: bpt:Bpet2173 putative transposon gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2159 Alide2_2160 Alide2_2160 Alide2_2160 2261747 2262577 + protein of unknown function DUF932 PFAM: Protein of unknown function DUF932~KEGG: sml:Smlt1327 hypothetical protein gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2160 Alide2_2161 Alide2_2161 Alide2_2161 2262658 2264724 + ParB domain protein nuclease KEGG: dia:Dtpsy_3534 ParB domain protein nuclease~PFAM: ParB-like nuclease~SMART: ParB-like nuclease gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2161 Alide2_2162 Alide2_2162 Alide2_2162 2264787 2264996 + hypothetical protein KEGG: dac:Daci_2732 hypothetical protein gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2162 Alide2_2163 Alide2_2163 Alide2_2163 2265201 2265428 - hypothetical protein KEGG: rfr:Rfer_0855 hypothetical protein gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2163 Alide2_2164 Alide2_2164 Alide2_2164 2265425 2265703 - mercuric transport protein periplasmic component KEGG: psa:PST_3433 periplasmic transport protein%3B MerP~TIGRFAM: Mercuric transport protein periplasmic component~PFAM: Heavy metal transport/detoxification protein gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2164 Alide2_2165 Alide2_2165 Alide2_2165 2265714 2266061 - Mercuric transport protein MerT PFAM: Mercuric transport protein MerT~KEGG: psa:PST_3432 mercuric transport protein gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2165 Alide2_2166 Alide2_2166 Alide2_2166 2266135 2266530 + transcriptional regulator%2C MerR family TIGRFAM: Hg(II)-responsive transcriptional regulator~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~KEGG: rme:Rmet_5990 mercury resistance regulatory protein MerR~SMART: HTH transcriptional regulator%2C MerR gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2166 Alide2_2167 Alide2_2167 Alide2_2167 2266792 2267841 - protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: dia:Dtpsy_2217 protein of unknown function DUF6 transmembrane gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2167 Alide2_2168 Alide2_2168 Alide2_2168 2267945 2268709 + hypothetical protein KEGG: pau:PA14_31180 hypothetical protein gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2168 Alide2_2169 Alide2_2169 Alide2_2169 2268721 2269035 + protein of unknown function DUF736 PFAM: Protein of unknown function DUF736~KEGG: dac:Daci_0462 hypothetical protein gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2169 Alide2_2170 Alide2_2170 Alide2_2170 2269191 2269484 - helix-turn-helix domain protein KEGG: bpr:GBP346_A0950 helix-turn-helix domain protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2170 Alide2_2171 Alide2_2171 Alide2_2171 2269710 2270057 + hypothetical protein KEGG: rme:Rmet_1482 hypothetical protein gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2171 Alide2_2172 Alide2_2172 Alide2_2172 2270314 2270637 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2172 Alide2_2173 Alide2_2173 Alide2_2173 2270634 2271548 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2173 Alide2_2174 Alide2_2174 Alide2_2174 2271720 2272472 + Protein of unknown function DUF2285 PFAM: Protein of unknown function DUF2285~KEGG: bpr:GBP346_A0953 hypothetical protein gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2174 Alide2_2175 Alide2_2175 Alide2_2175 2272556 2272837 + hypothetical protein KEGG: ajs:Ajs_2652 hypothetical protein gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2175 Alide2_2176 Alide2_2176 Alide2_2176 2272852 2273697 + Replication initiator protein A PFAM: Replication initiator protein A~KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2176 Alide2_2177 Alide2_2177 Alide2_2177 2273951 2274589 + Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: rme:Rmet_1255 cobyrinic acid a%2Cc-diamide synthase gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2177 Alide2_2178 Alide2_2178 Alide2_2178 2274586 2274870 + hypothetical protein KEGG: bpt:Bpet2187 hypothetical protein gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2178 Alide2_2179 Alide2_2179 Alide2_2179 2274867 2275412 + hypothetical protein KEGG: rme:Rmet_1257 hypothetical protein gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2179 Alide2_2180 Alide2_2180 Alide2_2180 2275409 2275996 + Peptidase S26%2C conserved region PFAM: Peptidase S26%2C conserved region~KEGG: rme:Rmet_1258 TraF peptidase gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2180 Alide2_2181 Alide2_2181 Alide2_2181 2276445 2278442 + hypothetical protein KEGG: pau:PA14_31070 hypothetical protein gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2181 Alide2_2182 Alide2_2182 Alide2_2182 2278637 2280316 - Bilirubin oxidase KEGG: net:Neut_0014 twin-arginine translocation pathway signal~PFAM: Multicopper oxidase%2C type 3%3B Multicopper oxidase%2C type 2 gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2182 Alide2_2183 Alide2_2183 Alide2_2183 2280491 2280604 - hypothetical protein gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2183 Alide2_2184 Alide2_2184 Alide2_2184 2280760 2281107 - hypothetical protein KEGG: ajs:Ajs_2700 hypothetical protein gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2184 Alide2_2185 Alide2_2185 Alide2_2185 2281233 2282642 - heavy metal sensor signal transduction histidine kinase TIGRFAM: Signal transduction histidine kinase%2C heavy metal sensor~PFAM: ATPase-like%2C ATP-binding domain%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~KEGG: dia:Dtpsy_2202 heavy metal sensor signal transduction histidine kinase~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2185 Alide2_2186 Alide2_2186 Alide2_2186 2282643 2283326 - two component heavy metal response transcriptional regulator%2C winged helix family TIGRFAM: Signal transduction response regulator%2C heavy metal response~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~KEGG: ajs:Ajs_2725 two component heavy metal response transcriptional regulator~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2186 Alide2_2187 Alide2_2187 Alide2_2187 2283451 2285271 + copper-resistance protein%2C CopA family KEGG: bmj:BMULJ_00903 copper resistance transmembrane protein~TIGRFAM: Copper-resistance protein CopA%3B Twin-arginine translocation pathway%2C signal sequence~PFAM: Multicopper oxidase%2C type 3%3B Multicopper oxidase%2C type 1%3B Multicopper oxidase%2C type 2 gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2187 Alide2_2188 Alide2_2188 Alide2_2188 2285478 2286476 + copper resistance B precursor KEGG: bmj:BMULJ_00902 copper resistance protein B~manually curated~PFAM: Copper resistance B precursor gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2188 Alide2_2189 Alide2_2189 Alide2_2189 2286499 2287005 + blue (type 1) copper domain protein PFAM: Blue (type 1) copper domain~KEGG: net:Neut_0023 blue (type1) copper domain-containing protein gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2189 Alide2_2190 Alide2_2190 Alide2_2190 2287060 2287401 + hypothetical protein KEGG: ajs:Ajs_2667 hypothetical protein gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2190 Alide2_2191 Alide2_2191 Alide2_2191 2287476 2287955 + hypothetical protein KEGG: dia:Dtpsy_2195 hypothetical protein gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2191 Alide2_2192 Alide2_2192 Alide2_2192 2287966 2288244 + hypothetical protein KEGG: dia:Dtpsy_2194 hypothetical protein gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2192 Alide2_2193 Alide2_2193 Alide2_2193 2288249 2288890 + isoprenylcysteine carboxyl methyltransferase KEGG: dia:Dtpsy_2193 isoprenylcysteine carboxyl methyltransferase gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2193 Alide2_2194 Alide2_2194 Alide2_2194 2288947 2289045 + hypothetical protein gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2194 Alide2_2195 Alide2_2195 Alide2_2195 2289146 2289424 + Heavy metal transport/detoxification protein PFAM: Heavy metal transport/detoxification protein~KEGG: ajs:Ajs_1492 heavy metal transport/detoxification protein gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2195 Alide2_2196 Alide2_2196 Alide2_2196 2289434 2291098 + hypothetical protein KEGG: rpf:Rpic12D_5298 hypothetical protein gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2196 Alide2_2197 Alide2_2197 Alide2_2197 2291107 2291610 + cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: dia:Dtpsy_2192 cytochrome c class I gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2197 Alide2_2198 Alide2_2198 Alide2_2198 2291728 2294196 + heavy metal translocating P-type ATPase TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P type%2C cation/copper-transporter%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: ajs:Ajs_2710 heavy metal translocating P-type ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Haloacid dehalogenase-like hydrolase gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2198 Alide2_2199 Alide2_2199 Alide2_2199 2294193 2294432 + hypothetical protein KEGG: maq:Maqu_0130 hypothetical protein gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2199 Alide2_2200 Alide2_2200 Alide2_2200 2294452 2294910 + hypothetical protein KEGG: axy:AXYL_01135 hypothetical protein gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2200 Alide2_2201 Alide2_2201 Alide2_2201 2294986 2296302 + heavy metal RND efflux outer membrane protein%2C CzcC family KEGG: axy:AXYL_01137 heavy metal RND efflux outer membrane protein%2C CzcC family gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2201 Alide2_2202 Alide2_2202 Alide2_2202 2296317 2297831 + efflux transporter%2C RND family%2C MFP subunit TIGRFAM: Secretion protein HlyD~KEGG: axy:AXYL_01138 RND family efflux transporter MFP subunit 3 gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2202 Alide2_2203 Alide2_2203 Alide2_2203 2297828 2300947 + heavy metal efflux pump%2C CzcA family KEGG: axy:AXYL_01139 cation efflux system protein CusA~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2203 Alide2_2204 Alide2_2204 Alide2_2204 2300973 2301524 + pseudogene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2204 Alide2_2205 Alide2_2205 Alide2_2205 2301591 2302394 - IstB domain protein ATP-binding protein KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2205 Alide2_2206 Alide2_2206 Alide2_2206 2302384 2303910 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: axy:AXYL_06593 integrase family protein 10 gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2206 Alide2_2207 Alide2_2207 Alide2_2207 2304015 2304365 + pseudogene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2207 Alide2_2208 Alide2_2208 Alide2_2208 2304823 2305845 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: bam:Bamb_2021 phage integrase family protein gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2208 Alide2_2209 Alide2_2209 Alide2_2209 2305814 2307109 - citrate synthase I KEGG: dia:Dtpsy_2288 type II citrate synthase~TIGRFAM: Citrate synthase%2C type II~PFAM: Citrate synthase-like gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2209 Alide2_2210 Alide2_2210 Alide2_2210 2307156 2307428 - protein of unknown function DUF339 PFAM: Protein of unknown function DUF339~KEGG: ajs:Ajs_2797 hypothetical protein gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2210 Alide2_2211 Alide2_2211 Alide2_2211 2307449 2308153 - succinate dehydrogenase and fumarate reductase iron-sulfur protein TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein~KEGG: dac:Daci_2424 succinate dehydrogenase and fumarate reductase iron-sulfur protein~PFAM: Ferredoxin gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2211 Alide2_2212 Alide2_2212 Alide2_2212 2308182 2309987 - succinate dehydrogenase%2C flavoprotein subunit TIGRFAM: Succinate dehydrogenase%2C flavoprotein subunit%3B Succinate dehydrogenase/fumarate reductase%2C flavoprotein subunit~KEGG: dia:Dtpsy_2285 succinate dehydrogenase%2C flavoprotein subunit~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal%3B Fumarate reductase/succinate dehydrogenase flavoprotein%2C C-terminal gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2212 Alide2_2213 Alide2_2213 Alide2_2213 2310038 2310403 - succinate dehydrogenase%2C hydrophobic membrane anchor protein KEGG: aav:Aave_2203 succinate dehydrogenase subunit D~TIGRFAM: Succinate dehydrogenase%2C hydrophobic membrane anchor~PFAM: Succinate dehydrogenase/Fumarate reductase%2C transmembrane subunit gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2213 Alide2_2214 Alide2_2214 Alide2_2214 2310428 2310859 - succinate dehydrogenase%2C cytochrome b556 subunit KEGG: dia:Dtpsy_2283 succinate dehydrogenase%2C cytochrome b556 subunit~TIGRFAM: Succinate dehydrogenase%2C cytochrome b556 subunit~PFAM: Succinate dehydrogenase/Fumarate reductase%2C transmembrane subunit gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2214 Alide2_2215 Alide2_2215 Alide2_2215 2311010 2311801 - transcriptional regulator%2C GntR family with UTRA sensor domain KEGG: dia:Dtpsy_2282 transcriptional regulator%2C GntR family~PFAM: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR~SMART: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2215 Alide2_2216 Alide2_2216 Alide2_2216 2311984 2312970 + malate dehydrogenase KEGG: dia:Dtpsy_2281 malate dehydrogenase~TIGRFAM: Malate dehydrogenase%2C NAD/NADP~PFAM: Lactate/malate dehydrogenase%2C N-terminal%3B Lactate/malate dehydrogenase%2C C-terminal gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2216 Alide2_2217 Alide2_2217 Alide2_2217 2312983 2313774 + Trans-aconitate 2-methyltransferase KEGG: dac:Daci_2430 trans-aconitate 2-methyltransferase~PFAM: Methyltransferase type 11 gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2217 Alide2_2218 Alide2_2218 Alide2_2218 2313982 2314626 + hypothetical protein KEGG: dia:Dtpsy_2278 hypothetical protein gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2218 Alide2_2219 Alide2_2219 Alide2_2219 2314744 2317335 + aconitate hydratase 2 KEGG: ajs:Ajs_2787 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase~TIGRFAM: Aconitase B%2C bacterial~PFAM: Aconitase B%2C N-terminal%2C bacterial%3B Aconitase B%2C HEAT-like%2C bacterial%3B Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2219 Alide2_2220 Alide2_2220 Alide2_2220 2317555 2318448 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ctt:CtCNB1_3364 transcriptional regulator%2C LysR family gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2220 Alide2_2221 Alide2_2221 Alide2_2221 2318555 2320261 + acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain~KEGG: ctt:CtCNB1_3363 acyl-CoA dehydrogenase-like protein gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2221 Alide2_2222 Alide2_2222 Alide2_2222 2320368 2321360 + hypothetical protein KEGG: ctt:CtCNB1_3361 AccB gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2222 Alide2_2223 Alide2_2223 Alide2_2223 2321367 2322527 + Formyl-CoA transferase KEGG: ctt:CtCNB1_3358 L-carnitine dehydratase/bile acid-inducible~PFAM: CoA-transferase family III gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2223 Alide2_2224 Alide2_2224 Alide2_2224 2322538 2323887 - glutathione-disulfide reductase TIGRFAM: Glutathione reductase%2C eukaryote/bacterial~KEGG: dac:Daci_2356 glutathione-disulfide reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2224 Alide2_2225 Alide2_2225 Alide2_2225 2324055 2324522 + Carbon-monoxide dehydrogenase (acceptor) KEGG: vei:Veis_4544 2Fe-2S iron-sulfur cluster binding domain-containing protein~PFAM: [2Fe-2S]-binding%3B Ferredoxin gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2225 Alide2_2226 Alide2_2226 Alide2_2226 2324556 2326928 + Carbon-monoxide dehydrogenase (acceptor) KEGG: vap:Vapar_1594 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding~PFAM: Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding%3B Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2226 Alide2_2227 Alide2_2227 Alide2_2227 2326942 2327733 + Carbon-monoxide dehydrogenase (acceptor) KEGG: pol:Bpro_0576 molybdopterin dehydrogenase%2C FAD-binding~PFAM: Molybdopterin dehydrogenase%2C FAD-binding%3B CO dehydrogenase flavoprotein%2C C-terminal gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2227 Alide2_2228 Alide2_2228 Alide2_2228 2327863 2328777 + ATPase associated with various cellular activities AAA_5 KEGG: dac:Daci_2251 ATPase~PFAM: ATPase%2C AAA-5~SMART: ATPase%2C AAA+ type%2C core gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2228 Alide2_2229 Alide2_2229 Alide2_2229 2328780 2330021 + VWA containing CoxE family protein KEGG: vei:Veis_4536 VWA containing CoxE family protein~PFAM: vWA containing CoxE-like~SMART: von Willebrand factor%2C type A gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2229 Alide2_2230 Alide2_2230 Alide2_2230 2330035 2330586 + carbon monoxide dehydrogenase subunit G PFAM: Carbon monoxide dehydrogenase subunit G~KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2230 Alide2_2231 Alide2_2231 Alide2_2231 2330596 2331636 + XshC-Cox1-family protein PFAM: XdhC- CoxI~KEGG: pol:Bpro_0572 hypothetical protein gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2231 Alide2_2232 Alide2_2232 Alide2_2232 2331636 2332283 + 4-diphosphocytidyl-2C-methyl-D-erythritol synthase PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2232 Alide2_2233 Alide2_2233 Alide2_2233 2332291 2333166 - hypothetical protein KEGG: dia:Dtpsy_2274 hypothetical protein gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2233 Alide2_2234 Alide2_2234 Alide2_2234 2333269 2335293 - hypothetical protein KEGG: gox:GOX2135 hypothetical protein gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2234 Alide2_2235 Alide2_2235 Alide2_2235 2335308 2336639 - amine oxidase PFAM: Amine oxidase~KEGG: xal:XALc_2703 protoporphyrinogen oxidase protein gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2235 Alide2_2236 Alide2_2236 Alide2_2236 2336645 2337610 - Lysylphosphatidylglycerol synthetase/UPF0104 KEGG: reh:H16_A2892 hypothetical protein~manually curated~PFAM: Lysylphosphatidylglycerol synthetase/UPF0104 gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2236 Alide2_2237 Alide2_2237 Alide2_2237 2337607 2338620 - glycosyl transferase family 2 KEGG: cph:Cpha266_0350 glycosyl transferase family protein~manually curated~PFAM: Glycosyl transferase%2C family 2 gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2237 Alide2_2238 Alide2_2238 Alide2_2238 2338719 2340092 - peptidase U32 PFAM: Peptidase U32~KEGG: dia:Dtpsy_2273 peptidase U32 gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2238 Alide2_2239 Alide2_2239 Alide2_2239 2340141 2341511 - hypothetical protein KEGG: dac:Daci_1894 hypothetical protein gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2239 Alide2_2240 Alide2_2240 Alide2_2240 2341539 2342420 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: pol:Bpro_2444 LysR family transcriptional regulator gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2240 Alide2_2241 Alide2_2241 Alide2_2241 2342519 2344786 + pseudogene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2241 Alide2_2242 Alide2_2242 Alide2_2242 2343034 2344389 - transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: pna:Pnap_4647 transposase%2C IS4 family protein gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2242 Alide2_2243 Alide2_2243 Alide2_2243 2344806 2345339 - two component transcriptional regulator%2C Fis family KEGG: dia:Dtpsy_2271 two component transcriptional regulator%2C fis family~PFAM: Signal transduction response regulator%2C receiver domain%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver domain gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2243 Alide2_2244 Alide2_2244 Alide2_2244 2345340 2346656 - integral membrane sensor signal transduction histidine kinase KEGG: ajs:Ajs_2780 integral membrane sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2244 Alide2_2245 Alide2_2245 Alide2_2245 2346653 2347462 - Surfeit locus 1 family protein PFAM: Surfeit locus 1~KEGG: ajs:Ajs_2779 surfeit locus 1 family protein gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2245 Alide2_2246 Alide2_2246 Alide2_2246 2347459 2347833 - cytochrome o ubiquinol oxidase subunit IV KEGG: ajs:Ajs_2778 cytochrome c oxidase subunit IV~TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV~PFAM: Cytochrome C oxidase subunit IV prokaryotic gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2246 Alide2_2247 Alide2_2247 Alide2_2247 2347834 2348466 - cytochrome o ubiquinol oxidase%2C subunit III KEGG: dia:Dtpsy_2267 cytochrome o ubiquinol oxidase%2C subunit III~TIGRFAM: Cytochrome o ubiquinol oxidase%2C subunit III~PFAM: Cytochrome c oxidase%2C subunit III gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2247 Alide2_2248 Alide2_2248 Alide2_2248 2348459 2350465 - cytochrome o ubiquinol oxidase%2C subunit I TIGRFAM: Cytochrome o ubiquinol oxidase%2C subunit I~KEGG: ajs:Ajs_2776 cytochrome-c oxidase~PFAM: Cytochrome c oxidase%2C subunit I gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2248 Alide2_2249 Alide2_2249 Alide2_2249 2350490 2351479 - ubiquinol oxidase%2C subunit II KEGG: ajs:Ajs_2775 ubiquinol oxidase%2C subunit II~TIGRFAM: Cytochrome o ubiquinol oxidase subunit II~PFAM: COX aromatic rich%3B Cytochrome c oxidase subunit II C-terminal gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2249 Alide2_2250 Alide2_2250 Alide2_2250 2351781 2353112 + General substrate transporter PFAM: General substrate transporter~KEGG: ajs:Ajs_2774 general substrate transporter gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2250 Alide2_2251 Alide2_2251 Alide2_2251 2353221 2354183 - protein TolA KEGG: dia:Dtpsy_2263 protein TolA~TIGRFAM: Tol-Pal system%2C TolA%3B TonB%2C C-terminal~PFAM: Tol-Pal system%2C TolA gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2251 Alide2_2252 Alide2_2252 Alide2_2252 2354205 2354630 - Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR~KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2252 Alide2_2253 Alide2_2253 Alide2_2253 2354644 2355345 - protein TolQ KEGG: dia:Dtpsy_2261 protein TolQ~TIGRFAM: Tol-Pal system%2C TolQ~PFAM: MotA/TolQ/ExbB proton channel gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2253 Alide2_2254 Alide2_2254 Alide2_2254 2355342 2355764 - tol-pal system-associated acyl-CoA thioesterase KEGG: dia:Dtpsy_2260 tol-pal system-associated acyl-CoA thioesterase~TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase%3B 4-hydroxybenzoyl-CoA thioesterase~PFAM: Thioesterase superfamily gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2254 Alide2_2255 Alide2_2255 Alide2_2255 2355767 2356951 - Aspartate transaminase KEGG: dia:Dtpsy_2259 aminotransferase~PFAM: Aminotransferase%2C class I/classII gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2255 Alide2_2256 Alide2_2256 Alide2_2256 2357023 2357568 - NusB antitermination factor TIGRFAM: NusB antitermination factor~HAMAP: NusB antitermination factor~KEGG: dia:Dtpsy_2258 NusB antitermination factor~PFAM: NusB/RsmB/TIM44 gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2256 Alide2_2257 Alide2_2257 Alide2_2257 2357565 2358029 - 6%2C7-dimethyl-8-ribityllumazine synthase KEGG: ajs:Ajs_2767 6%2C7-dimethyl-8-ribityllumazine synthase~TIGRFAM: 6%2C7-dimethyl-8-ribityllumazine synthase~PFAM: 6%2C7-dimethyl-8-ribityllumazine synthase gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2257 Alide2_2258 Alide2_2258 Alide2_2258 2358033 2359154 - 3%2C4-dihydroxy-2-butanone 4-phosphate synthase KEGG: dia:Dtpsy_2256 3%2C4-dihydroxy-2-butanone 4-phosphate synthase~TIGRFAM: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C RibB~PFAM: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C RibB%3B GTP cyclohydrolase II%2C RibA gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2258 Alide2_2259 Alide2_2259 Alide2_2259 2359292 2359579 - ferredoxin PFAM: Ferredoxin~KEGG: dia:Dtpsy_2255 ferredoxin gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2259 Alide2_2260 Alide2_2260 Alide2_2260 2359937 2360818 - NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: pna:Pnap_2699 NUDIX hydrolase gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2260 Alide2_2261 Alide2_2261 Alide2_2261 2360949 2361857 + 3-hydroxyacyl-CoA dehydrogenase KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2261 Alide2_2262 Alide2_2262 Alide2_2262 2361965 2363497 + glutamate/cysteine ligase TIGRFAM: Glutamate--cysteine ligase%2C monofunctional~KEGG: dia:Dtpsy_1339 glutamate/cysteine ligase~PFAM: Glutamate--cysteine ligase gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2262 Alide2_2263 Alide2_2263 Alide2_2263 2363540 2365723 + protein of unknown function DUF893 YccS/YhfK KEGG: vap:Vapar_3567 protein of unknown function DUF893 YccS/YhfK gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2263 Alide2_2264 Alide2_2264 Alide2_2264 2365720 2365932 - hypothetical protein KEGG: aav:Aave_2269 hypothetical protein gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2264 Alide2_2265 Alide2_2265 Alide2_2265 2366030 2366395 - Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: pol:Bpro_4413 endoribonuclease L-PSP gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2265 Alide2_2266 Alide2_2266 Alide2_2266 2366430 2367818 - BFD domain protein (2Fe-2S)-binding domain protein PFAM: BFD-like [2Fe-2S]-binding domain%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: pol:Bpro_4414 BFD-like (2Fe-2S)-binding region gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2266 Alide2_2267 Alide2_2267 Alide2_2267 2367820 2368164 - hypothetical protein KEGG: pol:Bpro_4415 hypothetical protein gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2267 Alide2_2268 Alide2_2268 Alide2_2268 2368154 2369290 - FAD dependent oxidoreductase KEGG: pol:Bpro_4416 FAD dependent oxidoreductase~manually curated~PFAM: FAD dependent oxidoreductase gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2268 Alide2_2269 Alide2_2269 Alide2_2269 2369335 2370318 - hypothetical protein KEGG: dac:Daci_0779 hypothetical protein gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2269 Alide2_2270 Alide2_2270 Alide2_2270 2370393 2371316 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: pol:Bpro_4347 LysR family transcriptional regulator gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2270 Alide2_2271 Alide2_2271 Alide2_2271 2371489 2372448 + ribosome biogenesis GTP-binding protein YlqF KEGG: ajs:Ajs_2510 GTP-binding protein%2C HSR1-related~TIGRFAM: GTP-binding protein%2C ribosome biogenesis%2C YlqF~PFAM: GTP-binding protein%2C HSR1-related gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2271 Alide2_2272 Alide2_2272 Alide2_2272 2372530 2374359 - hypothetical protein KEGG: dia:Dtpsy_1352 hypothetical protein gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2272 Alide2_2273 Alide2_2273 Alide2_2273 2374406 2375176 - pseudouridine synthase KEGG: dia:Dtpsy_1355 pseudouridine synthase~manually curated~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2273 Alide2_2274 Alide2_2274 Alide2_2274 2375173 2375466 - hypothetical protein KEGG: dia:Dtpsy_1356 hypothetical protein gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2274 Alide2_2275 Alide2_2275 Alide2_2275 2375570 2376496 + phosphoesterase DHHA1 PFAM: Phosphoesterase%2C DHHA1~KEGG: ajs:Ajs_2502 phosphoesterase%2C DHHA1 gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2275 Alide2_2276 Alide2_2276 Alide2_2276 2376547 2377782 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: aav:Aave_2285 major facilitator superfamily transporter gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2276 Alide2_2277 Alide2_2277 Alide2_2277 2377824 2378249 - nuclease (SNase domain-containing protein) KEGG: ajs:Ajs_2501 nuclease~PFAM: Staphylococcal nuclease (SNase-like)~SMART: Staphylococcal nuclease (SNase-like) gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2277 Alide2_2278 Alide2_2278 Alide2_2278 2378348 2379223 + RarD protein%2C DMT superfamily transporter TIGRFAM: RarD protein~KEGG: dia:Dtpsy_1360 RarD protein%2C DMT superfamily transporter gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2278 Alide2_2279 Alide2_2279 Alide2_2279 2379257 2379823 - pseudouridine synthase Rsu KEGG: dia:Dtpsy_1363 pseudouridine synthase~TIGRFAM: Pseudouridine synthase%2C RsuA/RluB/E/F~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2279 Alide2_2280 Alide2_2280 Alide2_2280 2379820 2380650 - Peptidase M23 PFAM: Peptidase M23~KEGG: ajs:Ajs_2496 peptidase M23B gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2280 Alide2_2281 Alide2_2281 Alide2_2281 2380923 2382326 + Aspartate ammonia-lyase KEGG: dia:Dtpsy_1365 fumarate lyase~PFAM: Lyase 1%2C N-terminal%3B Fumarase C%2C C-terminal gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2281 Alide2_2282 Alide2_2282 Alide2_2282 2382399 2383205 - protein of unknown function DUF306 Meta and HslJ PFAM: Domain of unknown function DUF306%2C Meta/HslJ~KEGG: dac:Daci_2483 hypothetical protein gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2282 Alide2_2283 Alide2_2283 Alide2_2283 2383271 2383810 - protein of unknown function DUF924 PFAM: Protein of unknown function DUF924~KEGG: hel:HELO_3084 protein of unknown function DUF924 gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2283 Alide2_2284 Alide2_2284 Alide2_2284 2383828 2385639 - glutaminyl-tRNA synthetase TIGRFAM: Glutaminyl-tRNA synthetase%2C class Ic~KEGG: ajs:Ajs_1608 glutaminyl-tRNA synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain%3B Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C anti-codon binding domain gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2284 Alide2_2285 Alide2_2285 Alide2_2285 2385779 2386117 + hypothetical protein KEGG: dia:Dtpsy_2105 hypothetical protein gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2285 Alide2_2286 Alide2_2286 Alide2_2286 2386226 2386675 + 3-dehydroquinate dehydratase%2C type II TIGRFAM: Dehydroquinase%2C class II~KEGG: ajs:Ajs_1610 3-dehydroquinate dehydratase~PFAM: Dehydroquinase%2C class II gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2286 Alide2_2287 Alide2_2287 Alide2_2287 2386669 2387562 + alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: dia:Dtpsy_2103 alpha/beta hydrolase fold protein gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2287 Alide2_2288 Alide2_2288 Alide2_2288 2387559 2387984 + Class I peptide chain release factor PFAM: Peptide chain release factor class I/class II~KEGG: dia:Dtpsy_2102 class I peptide chain release factor gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2288 Alide2_2289 Alide2_2289 Alide2_2289 2388086 2388922 + Extradiol ring-cleavage dioxygenase class III protein subunit B PFAM: Extradiol ring-cleavage dioxygenase%2C class III enzyme%2C subunit B~KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2289 Alide2_2290 Alide2_2290 Alide2_2290 2388919 2389614 + phospholipase/Carboxylesterase PFAM: Phospholipase/carboxylesterase~KEGG: vei:Veis_2297 phospholipase/carboxylesterase gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2290 Alide2_2291 Alide2_2291 Alide2_2291 2389795 2390673 + hypothetical protein KEGG: ajs:Ajs_1615 hypothetical protein gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2291 Alide2_2292 Alide2_2292 Alide2_2292 2390692 2391162 - transcriptional regulator%2C AsnC family KEGG: ajs:Ajs_1616 AsnC family transcriptional regulator~PFAM: Transcription regulator AsnC-type%2C C-terminal~SMART: Transcription regulator AsnC-type gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2292 Alide2_2293 Alide2_2293 Alide2_2293 2391266 2393893 + 2-oxo-acid dehydrogenase E1 subunit%2C homodimeric type TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type%3B Alpha-ketoglutarate dehydrogenase~KEGG: ajs:Ajs_1617 2-oxoacid dehydrogenase subunit E1~PFAM: Transketolase%2C N-terminal%3B Transketolase-like%2C pyrimidine-binding domain gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2293 Alide2_2294 Alide2_2294 Alide2_2294 2393910 2395193 - Amidase PFAM: Amidase~KEGG: bpt:Bpet0082 putative amidase gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2294 Alide2_2295 Alide2_2295 Alide2_2295 2395202 2396194 - hypothetical protein KEGG: aav:Aave_3937 hypothetical protein gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2295 Alide2_2296 Alide2_2296 Alide2_2296 2396305 2397222 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: hmg:100212933 similar to lysR transcriptional regulator gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2296 Alide2_2297 Alide2_2297 Alide2_2297 2397257 2398036 + GntR domain protein KEGG: vap:Vapar_5148 GntR domain protein~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2297 Alide2_2298 Alide2_2298 Alide2_2298 2398189 2399511 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1 gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2298 Alide2_2299 Alide2_2299 Alide2_2299 2399523 2400413 + 3-hydroxyisobutyrate dehydrogenase KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase~PFAM: 6-phosphogluconate dehydrogenase%2C NAD-binding gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2299 Alide2_2300 Alide2_2300 Alide2_2300 2400484 2401497 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2300 Alide2_2301 Alide2_2301 Alide2_2301 2401501 2402763 + type III effector Hrp-dependent outer protein PFAM: Protein of unknown function%2C DUF1537~KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2301 Alide2_2302 Alide2_2302 Alide2_2302 2402760 2403425 + class II aldolase/adducin family protein PFAM: Class II aldolase/adducin%2C N-terminal~KEGG: vap:Vapar_5143 putative aldolase gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2302 Alide2_2303 Alide2_2303 Alide2_2303 2403435 2404244 + Hydroxypyruvate isomerase KEGG: pol:Bpro_4876 hydroxypyruvate isomerase~PFAM: Xylose isomerase%2C TIM barrel domain gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2303 Alide2_2304 Alide2_2304 Alide2_2304 2404286 2405119 - protein of unknown function DUF980 PFAM: Protein of unknown function DUF980~KEGG: ajs:Ajs_1618 hypothetical protein gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2304 Alide2_2305 Alide2_2305 Alide2_2305 2405124 2405906 - metallophosphoesterase PFAM: Metallo-dependent phosphatase~KEGG: dia:Dtpsy_2095 UDP-2%2C3-diacylglucosamine hydrolase gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2305 Alide2_2306 Alide2_2306 Alide2_2306 2405911 2406438 - Peptidylprolyl isomerase KEGG: dia:Dtpsy_2094 peptidyl-prolyl cis-trans isomerase cyclophilin type~PFAM: Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2306 Alide2_2307 Alide2_2307 Alide2_2307 2406460 2407047 - Peptidylprolyl isomerase KEGG: dia:Dtpsy_2093 peptidyl-prolyl cis-trans isomerase cyclophilin type~PFAM: Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2307 Alide2_2308 Alide2_2308 Alide2_2308 2407044 2408414 - ErfK/YbiS/YcfS/YnhG family protein PFAM: YkuD domain~KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2308 Alide2_2309 Alide2_2309 Alide2_2309 2408493 2409563 - Tetratricopeptide TPR_1 repeat-containing protein PFAM: Tetratricopeptide TPR-1~KEGG: aav:Aave_2319 TPR repeat-containing protein gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2309 Alide2_2310 Alide2_2310 Alide2_2310 2409787 2411163 + cysteinyl-tRNA synthetase SMART: Cysteinyl-tRNA synthetase%2C class Ia%2C DALR~TIGRFAM: Cysteinyl-tRNA synthetase%2C class Ia~KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase~PFAM: Cysteinyl-tRNA synthetase%2C class Ia%3B Cysteinyl-tRNA synthetase%2C class Ia%2C DALR gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2310 Alide2_2311 Alide2_2311 Alide2_2311 2411209 2411856 + DNA-3-methyladenine glycosylase II SMART: HhH-GPD domain~manually curated~KEGG: dia:Dtpsy_2090 HhH-GPD family protein~PFAM: HhH-GPD domain gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2311 Alide2_2312 Alide2_2312 Alide2_2312 2411908 2412885 + Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha PFAM: Acetyl-CoA carboxylase%2C alpha subunit~TIGRFAM: Acetyl-CoA carboxylase%2C alpha subunit~HAMAP: Acetyl-CoA carboxylase%2C alpha subunit~KEGG: ajs:Ajs_1625 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2312 Alide2_2313 Alide2_2313 Alide2_2313 2412953 2413960 + tRNA(Ile)-lysidine synthetase KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase~TIGRFAM: Lysidine-tRNA(Ile) synthetase%2C N-terminal~PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase%3B Lysidine-tRNA(Ile) synthetase%2C substrate-binding domain gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2313 Alide2_2314 Alide2_2314 Alide2_2314 2413997 2415268 + aspartate kinase KEGG: aav:Aave_2324 aspartate kinase~TIGRFAM: Aspartate kinase domain%3B Aspartate kinase%2C monofunctional class~PFAM: Aspartate/glutamate/uridylate kinase%3B Amino acid-binding ACT gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2314 Alide2_2315 Alide2_2315 Alide2_2315 2415315 2416670 - Cl- channel voltage-gated family protein PFAM: Chloride channel%2C voltage gated~KEGG: aav:Aave_4712 Cl-channel%2C voltage-gated family protein gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2315 Alide2_2316 Alide2_2316 Alide2_2316 2417121 2417729 + regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: ajs:Ajs_1833 TetR family transcriptional regulator gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2316 Alide2_2317 Alide2_2317 Alide2_2317 2417726 2418877 + efflux transporter%2C RND family%2C MFP subunit KEGG: dia:Dtpsy_1685 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2317 Alide2_2318 Alide2_2318 Alide2_2318 2418874 2420073 + protein of unknown function DUF214 PFAM: Domain of unknown function DUF214%2C ABC transporter permease~KEGG: dia:Dtpsy_1686 protein of unknown function DUF214 gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2318 Alide2_2319 Alide2_2319 Alide2_2319 2420078 2420788 + Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: ajs:Ajs_1836 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2319 Alide2_2320 Alide2_2320 Alide2_2320 2420859 2422187 - lytic murein transglycosylase KEGG: ajs:Ajs_1837 lytic murein transglycosylase~TIGRFAM: Lytic murein transglycosylase~PFAM: Peptidoglycan binding-like gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2320 Alide2_2321 Alide2_2321 Alide2_2321 2422234 2423670 + Exodeoxyribonuclease I KEGG: ajs:Ajs_1838 exonuclease I~PFAM: Exonuclease C-terminal%3B Exonuclease%2C RNase T/DNA polymerase III gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2321 Alide2_2322 Alide2_2322 Alide2_2322 2423642 2424490 + Silent information regulator protein Sir2 PFAM: NAD-dependent histone deacetylase%2C silent information regulator Sir2~KEGG: ajs:Ajs_1839 silent information regulator protein Sir2 gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2322 Alide2_2323 Alide2_2323 Alide2_2323 2424623 2426986 + putative phytochrome sensor protein KEGG: dia:Dtpsy_1696 putative phytochrome sensor protein~PFAM: Uncharacterised protein family UPF0118%3B GAF~SMART: GAF gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2323 Alide2_2324 Alide2_2324 Alide2_2324 2426968 2427537 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase (GNAT) domain~KEGG: aav:Aave_3219 GCN5-related N-acetyltransferase gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2324 Alide2_2325 Alide2_2325 Alide2_2325 2427534 2428163 - uracil phosphoribosyltransferase KEGG: xtr:100496255 uracil phosphoribosyltransferase-like~TIGRFAM: Uracil phosphoribosyl transferase~PFAM: Phosphoribosyltransferase gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2325 Alide2_2326 Alide2_2326 Alide2_2326 2428252 2429238 - Threo-3-hydroxyaspartate ammonia-lyase KEGG: dia:Dtpsy_1698 pyridoxal-5'-phosphate-dependent protein beta subunit~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2326 Alide2_2327 Alide2_2327 Alide2_2327 2429489 2430193 + protein of unknown function DUF28 PFAM: Protein of unknown function DUF28~KEGG: dia:Dtpsy_1700 hypothetical protein gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2327 Alide2_2328 Alide2_2328 Alide2_2328 2430327 2430481 + pseudogene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2328 Alide2_2329 Alide2_2329 Alide2_2329 2430857 2432281 + cytochrome c oxidase accessory protein CcoG TIGRFAM: Cytochrome c oxidase cbb3 type%2C accessory protein FixG~KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2329 Alide2_2330 Alide2_2330 Alide2_2330 2432308 2433726 + cytochrome bd ubiquinol oxidase subunit I PFAM: Cytochrome d ubiquinol oxidase%2C subunit I~KEGG: ara:Arad_12230 cytochrome bd-type quinol oxidase subunit 1 gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2330 Alide2_2331 Alide2_2331 Alide2_2331 2433730 2434740 + cytochrome d ubiquinol oxidase%2C subunit II KEGG: msl:Msil_2643 cytochrome d ubiquinol oxidase%2C subunit II~TIGRFAM: Cytochrome d ubiquinol oxidase%2C subunit II~PFAM: Cytochrome d ubiquinol oxidase%2C subunit II gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2331 Alide2_2332 Alide2_2332 Alide2_2332 2434740 2434886 + Protein of unknown function DUF2474 PFAM: Protein of unknown function DUF2474~KEGG: ara:Arad_12232 hypothetical protein gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2332 Alide2_2333 Alide2_2333 Alide2_2333 2435301 2435996 - LrgB family protein PFAM: LrgB-like protein~KEGG: dia:Dtpsy_2405 LrgB family protein gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2333 Alide2_2334 Alide2_2334 Alide2_2334 2435993 2436394 - LrgA family protein PFAM: Uncharacterised protein family LrgA/YohJ~KEGG: dac:Daci_2210 LrgA family protein gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2334 Alide2_2335 Alide2_2335 Alide2_2335 2436603 2438030 + transcriptional regulator%2C GntR family with aminotransferase domain PFAM: HTH transcriptional regulator%2C GntR%3B Aminotransferase%2C class I/classII~KEGG: mpt:Mpe_A0752 GntR family transcriptional regulator~SMART: HTH transcriptional regulator%2C GntR gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2335 Alide2_2336 Alide2_2336 Alide2_2336 2438119 2438820 - Glutathione S-transferase domain protein PFAM: Glutathione S-transferase%2C C-terminal%3B Glutathione S-transferase%2C N-terminal~KEGG: dia:Dtpsy_1701 glutathione S-transferase domain protein gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2336 Alide2_2337 Alide2_2337 Alide2_2337 2438891 2440396 - protein of unknown function DUF853 NPT hydrolase KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative~PFAM: Protein of unknown function DUF853%2C nucleotide triphosphate hydrolase%2C putative~SMART: ATPase%2C AAA+ type%2C core gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2337 Alide2_2338 Alide2_2338 Alide2_2338 2440469 2441188 + UPF0082 protein yeeN TIGRFAM: Protein of unknown function DUF28~HAMAP: Protein of unknown function DUF28~KEGG: dia:Dtpsy_1703 hypothetical protein~PFAM: Protein of unknown function DUF28 gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2338 Alide2_2339 Alide2_2339 Alide2_2339 2441185 2442471 + phosphoribosylamine/glycine ligase TIGRFAM: Phosphoribosylglycinamide synthetase~KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase~PFAM: Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C N-domain%3B Phosphoribosylglycinamide synthetase%2C C-domain gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2339 Alide2_2340 Alide2_2340 Alide2_2340 2442471 2443397 + Coproporphyrinogen-III oxidase%2C aerobic HAMAP: Coproporphyrinogen III oxidase~KEGG: dia:Dtpsy_1705 coproporphyrinogen III oxidase~PFAM: Coproporphyrinogen III oxidase gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2340 Alide2_2341 Alide2_2341 Alide2_2341 2443481 2444161 + iojap-like protein KEGG: dia:Dtpsy_1706 iojap-like protein~TIGRFAM: Ribosome-associated%2C Iojap-like~PFAM: Ribosome-associated%2C Iojap-like gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2341 Alide2_2342 Alide2_2342 Alide2_2342 2444161 2444628 + Ribosomal RNA large subunit methyltransferase H TIGRFAM: Ribosomal RNA large subunit methyltransferase H~HAMAP: SPOUT methyltransferase%2C predicted~KEGG: aav:Aave_3199 rRNA large subunit methyltransferase~PFAM: SPOUT methyltransferase%2C predicted gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2342 Alide2_2343 Alide2_2343 Alide2_2343 2444696 2445301 + maf protein KEGG: xtr:100495456 hypothetical protein LOC100495456~TIGRFAM: Maf-like protein~PFAM: Maf-like protein gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2343 Alide2_2344 Alide2_2344 Alide2_2344 2445307 2446026 - transcriptional regulator%2C Crp/Fnr family KEGG: dia:Dtpsy_1709 transcriptional regulator%2C Crp/Fnr family~PFAM: Cyclic nucleotide-binding domain~SMART: Cyclic nucleotide-binding domain%3B HTH transcriptional regulator%2C Crp gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2344 Alide2_2345 Alide2_2345 Alide2_2345 2446233 2447828 - Hydroxylamine reductase KEGG: dia:Dtpsy_1710 cytochrome d1 heme region~PFAM: Cytochrome c%2C class I gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2345 Alide2_2346 Alide2_2346 Alide2_2346 2447821 2449041 - Radical SAM domain protein KEGG: dia:Dtpsy_1711 radical SAM domain protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2346 Alide2_2347 Alide2_2347 Alide2_2347 2449044 2449523 - putative transcriptional regulator%2C AsnC family KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2347 Alide2_2348 Alide2_2348 Alide2_2348 2449504 2451006 - hypothetical protein KEGG: dia:Dtpsy_1714 putative transcriptional regulator%2C AsnC family gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2348 Alide2_2349 Alide2_2349 Alide2_2349 2451010 2452218 - cytochrome d1%2C heme region KEGG: ajs:Ajs_1910 cytochrome d1%2C heme region gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2349 Alide2_2350 Alide2_2350 Alide2_2350 2452215 2452568 - hypothetical protein KEGG: dia:Dtpsy_1716 hypothetical protein gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2350 Alide2_2351 Alide2_2351 Alide2_2351 2452591 2454315 - Hydroxylamine reductase KEGG: dia:Dtpsy_1717 hydroxylamine reductase~PFAM: Cytochrome c%2C class I gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2351 Alide2_2352 Alide2_2352 Alide2_2352 2454527 2455354 + uroporphyrin-III C-methyltransferase TIGRFAM: Uroporphyrin-III C-methyltransferase%2C C-terminal~KEGG: dia:Dtpsy_1718 uroporphyrin-III C-methyltransferase~PFAM: Tetrapyrrole methylase gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2352 Alide2_2353 Alide2_2353 Alide2_2353 2455436 2456923 + ribonuclease%2C Rne/Rng family TIGRFAM: Ribonuclease E/G~PFAM: RNA-binding protein AU-1/Ribonuclease E/G%3B Ribosomal protein S1%2C RNA-binding domain~KEGG: ajs:Ajs_1914 ribonuclease G~SMART: RNA-binding domain%2C S1 gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2353 Alide2_2354 Alide2_2354 Alide2_2354 2457099 2458784 + diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted~KEGG: pca:Pcar_0095 putative sensory transduction system%2C regulatory protein~SMART: Diguanylate cyclase%2C predicted gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2354 Alide2_2355 Alide2_2355 Alide2_2355 2458718 2459491 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding~KEGG: hmg:100212933 similar to lysR transcriptional regulator gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2355 Alide2_2356 Alide2_2356 Alide2_2356 2459560 2460711 - Kynurenine--oxoglutarate transaminase KEGG: dia:Dtpsy_1720 putative aminotransferase~PFAM: Aminotransferase%2C class I/classII gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2356 Alide2_2357 Alide2_2357 Alide2_2357 2460853 2461794 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_1721 transcriptional regulator CysB-like protein gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2357 Alide2_2358 Alide2_2358 Alide2_2358 2461838 2462218 - cobalamin (vitamin B12) biosynthesis CbiX protein PFAM: Cobalamin (vitamin B12) biosynthesis CbiX~KEGG: dia:Dtpsy_1722 cobalamin (vitamin B12) biosynthesis CbiX protein gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2358 Alide2_2359 Alide2_2359 Alide2_2359 2462252 2463352 - permease YjgP/YjgQ family protein PFAM: Permease YjgP/YjgQ%2C predicted~KEGG: dia:Dtpsy_1723 permease YjgP/YjgQ family protein gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2359 Alide2_2360 Alide2_2360 Alide2_2360 2463349 2464443 - permease YjgP/YjgQ family protein KEGG: dia:Dtpsy_1724 permease YjgP/YjgQ family protein~manually curated~PFAM: Permease YjgP/YjgQ%2C predicted gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2360 Alide2_2361 Alide2_2361 Alide2_2361 2464467 2465960 + peptidase M17 leucyl aminopeptidase domain protein PFAM: Peptidase M17%2C leucyl aminopeptidase%2C C-terminal%3B Peptidase M17%2C leucyl aminopeptidase%2C N-terminal~KEGG: ajs:Ajs_1921 PepA aminopeptidase gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2361 Alide2_2362 Alide2_2362 Alide2_2362 2465960 2466424 + DNA polymerase III chi subunit HolC PFAM: DNA polymerase III chi subunit%2C HolC~KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit%2C HolC gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2362 Alide2_2363 Alide2_2363 Alide2_2363 2466424 2466825 + hypothetical protein KEGG: dia:Dtpsy_1727 hypothetical protein gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2363 Alide2_2364 Alide2_2364 Alide2_2364 2466954 2468087 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: ajs:Ajs_1925 extracellular ligand-binding receptor gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2364 Alide2_2365 Alide2_2365 Alide2_2365 2468178 2469185 - Phosphoglycerate dehydrogenase KEGG: ajs:Ajs_1926 D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2365 Alide2_2366 Alide2_2366 Alide2_2366 2469408 2469602 + pseudogene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2366 Alide2_2367 Alide2_2367 Alide2_2367 2469924 2470899 - pseudogene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2367 Alide2_2368 Alide2_2368 Alide2_2368 2470987 2471235 - pseudogene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2368 Alide2_2369 Alide2_2369 Alide2_2369 2471601 2472131 + hypothetical protein manually curated~KEGG: ajs:Ajs_1927 hypothetical protein gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2369 Alide2_2370 Alide2_2370 Alide2_2370 2472156 2472905 + Protein of unknown function DUF2257 KEGG: dia:Dtpsy_1731 hypothetical protein~manually curated~PFAM: Protein of unknown function DUF2257 gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2370 Alide2_2371 Alide2_2371 Alide2_2371 2473000 2473440 + UspA domain-containing protein PFAM: UspA~KEGG: dia:Dtpsy_1732 UspA domain protein gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2371 Alide2_2372 Alide2_2372 Alide2_2372 2473502 2474014 - hemerythrin-like metal-binding protein KEGG: dac:Daci_4355 hypothetical protein~TIGRFAM: Haemerythrin-like%2C metal-binding~PFAM: Haemerythrin/HHE cation-binding motif gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2372 Alide2_2373 Alide2_2373 Alide2_2373 2474127 2475104 - hypothetical protein KEGG: ajs:Ajs_1930 hypothetical protein gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2373 Alide2_2374 Alide2_2374 Alide2_2374 2475245 2476429 - acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: xtr:100490341 acetyl-CoA acetyltransferase-like~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2374 Alide2_2375 Alide2_2375 Alide2_2375 2476538 2477308 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: dia:Dtpsy_1735 short-chain dehydrogenase/reductase SDR gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2375 Alide2_2376 Alide2_2376 Alide2_2376 2477342 2478019 - pseudouridine synthase PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~KEGG: ajs:Ajs_1933 ribosomal large subunit pseudouridine synthase A gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2376 Alide2_2377 Alide2_2377 Alide2_2377 2478009 2480177 - PAS/PAC sensor hybrid histidine kinase TIGRFAM: PAS~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS fold%3B Signal transduction response regulator%2C receiver domain~KEGG: dia:Dtpsy_1737 signal transduction histidine kinase%2C nitrogen specific%2C NtrB~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS%3B Signal transduction response regulator%2C receiver domain gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2377 Alide2_2378 Alide2_2378 Alide2_2378 2480223 2480621 - Peptidylprolyl isomerase KEGG: dia:Dtpsy_1738 peptidylprolyl isomerase~PFAM: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2378 Alide2_2379 Alide2_2379 Alide2_2379 2480901 2481695 + two component transcriptional regulator%2C LuxR family KEGG: dia:Dtpsy_1772 two component transcriptional regulator%2C LuxR family~PFAM: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain~SMART: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2379 Alide2_2380 Alide2_2380 Alide2_2380 2481733 2482593 + integral membrane sensor signal transduction histidine kinase KEGG: dia:Dtpsy_1773 putative signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 3%2C dimerisation and phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2380 Alide2_2381 Alide2_2381 Alide2_2381 2482685 2483272 + hypothetical protein KEGG: dia:Dtpsy_1406 hypothetical protein gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2381 Alide2_2382 Alide2_2382 Alide2_2382 2483280 2484110 - Redoxin domain protein PFAM: Redoxin~KEGG: ajs:Ajs_2433 redoxin domain-containing protein gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2382 Alide2_2383 Alide2_2383 Alide2_2383 2484337 2484960 + 2'%2C5' RNA ligase KEGG: dia:Dtpsy_1426 2'%2C5' RNA ligase gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2383 Alide2_2384 Alide2_2384 Alide2_2384 2485035 2485514 - hypothetical protein KEGG: ajs:Ajs_2417 hypothetical protein gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2384 Alide2_2385 Alide2_2385 Alide2_2385 2485641 2486111 - hypothetical protein KEGG: dia:Dtpsy_1431 hypothetical protein gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2385 Alide2_2386 Alide2_2386 Alide2_2386 2486108 2486551 - putative transmembrane anti-sigma factor KEGG: dia:Dtpsy_1432 putative transmembrane anti-sigma factor gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2386 Alide2_2387 Alide2_2387 Alide2_2387 2486567 2487121 - RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: dia:Dtpsy_1433 RNA polymerase%2C sigma-24 subunit%2C ECF subfamily~TIGRFAM: RNA polymerase sigma-70~PFAM: RNA polymerase sigma factor 70%2C region 4 type 2%3B RNA polymerase sigma-70 region 2 gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2387 Alide2_2388 Alide2_2388 Alide2_2388 2487224 2487544 + hypothetical protein KEGG: dia:Dtpsy_1434 hypothetical protein gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2388 Alide2_2389 Alide2_2389 Alide2_2389 2487596 2489047 + 23S rRNA (uracil-5-)-methyltransferase rumA PFAM: (Uracil-5)-methyltransferase~manually curated~TIGRFAM: 23S rRNA methyltransferase/RumA~KEGG: dia:Dtpsy_1435 23S rRNA 5-methyluridine methyltransferase~HAMAP: 23S rRNA methyltransferase/RumA gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2389 Alide2_2390 Alide2_2390 Alide2_2390 2489059 2490402 + D-serine dehydratase PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~TIGRFAM: D-serine ammonia-lyase~HAMAP: D-serine dehydratase~KEGG: ajs:Ajs_2250 D-serine dehydratase gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2390 Alide2_2391 Alide2_2391 Alide2_2391 2490418 2491008 - Uncharacterized protein family UPF0029%2C Impact%2C N-terminal protein PFAM: Uncharacterised protein family UPF0029%2C Impact%2C N-terminal%3B Uncharacterised protein family UPF0029%2C Impact%2C C-terminal~KEGG: ajs:Ajs_2244 hypothetical protein gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2391 Alide2_2392 Alide2_2392 Alide2_2392 2491190 2491648 + azurin blue-copper protein KEGG: har:HEAR1365 azurin precursor~TIGRFAM: Azurin%2C proteobacteria~PFAM: Blue (type 1) copper domain gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2392 Alide2_2393 Alide2_2393 Alide2_2393 2491725 2494151 + UPF0313 protein ygiQ HAMAP: Uncharacterised protein family UPF0313~PFAM: Radical SAM N-terminal%3B Radical SAM~KEGG: dia:Dtpsy_1631 radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2393 Alide2_2394 Alide2_2394 Alide2_2394 2494261 2495457 - Aspartate transaminase KEGG: ajs:Ajs_2151 aromatic amino acid aminotransferase~PFAM: Aminotransferase%2C class I/classII gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2394 Alide2_2395 Alide2_2395 Alide2_2395 2495573 2497660 + excinuclease ABC%2C B subunit TIGRFAM: Excinuclease ABC%2C B subunit~PFAM: Helicase%2C C-terminal%3B UvrB/UvrC protein%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: dia:Dtpsy_1636 excinuclease ABC subunit B~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2395 Alide2_2396 Alide2_2396 Alide2_2396 2497911 2498447 + transcriptional regulator%2C BadM/Rrf2 family KEGG: dia:Dtpsy_1637 transcriptional regulator%2C BadM/Rrf2 family~TIGRFAM: ISC system FeS cluster assembly%2C IscR transcription factor%3B Transcription regulator Rrf2~PFAM: Transcription regulator Rrf2 gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2396 Alide2_2397 Alide2_2397 Alide2_2397 2498523 2499743 + cysteine desulfurase IscS TIGRFAM: Cysteine desulfurase~KEGG: dia:Dtpsy_1638 cysteine desulfurase IscS~PFAM: Aminotransferase%2C class V/Cysteine desulfurase gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2397 Alide2_2398 Alide2_2398 Alide2_2398 2499766 2500167 + FeS cluster assembly scaffold IscU KEGG: dia:Dtpsy_1639 FeS cluster assembly scaffold IscU~TIGRFAM: ISC system FeS cluster assembly%2C IscU scaffold~PFAM: NIF system FeS cluster assembly%2C NifU%2C N-terminal gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2398 Alide2_2399 Alide2_2399 Alide2_2399 2500175 2500498 + iron-sulfur cluster assembly protein IscA KEGG: dia:Dtpsy_1640 iron-sulfur cluster assembly protein IscA~TIGRFAM: ISC system FeS cluster assembly%2C IscA scaffold%3B FeS cluster insertion~PFAM: FeS cluster biogenesis gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2399 Alide2_2400 Alide2_2400 Alide2_2400 2500556 2501074 + co-chaperone Hsc20 TIGRFAM: Co-chaperone Hsc20~PFAM: Heat shock cognate protein B%2C C-terminal oligomerisation%3B Heat shock protein DnaJ%2C N-terminal~KEGG: dia:Dtpsy_1641 co-chaperone Hsc20~SMART: Heat shock protein DnaJ%2C N-terminal gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2400 Alide2_2401 Alide2_2401 Alide2_2401 2501111 2502979 + Fe-S protein assembly chaperone HscA KEGG: dia:Dtpsy_1642 chaperone protein HscA~TIGRFAM: ISC system FeS cluster assembly%2C HscA chaperone~PFAM: Heat shock protein 70 gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2401 Alide2_2402 Alide2_2402 Alide2_2402 2503015 2503353 + ferredoxin%2C 2Fe-2S type%2C ISC system KEGG: dia:Dtpsy_1643 ferredoxin%2C 2Fe-2S type%2C ISC system~TIGRFAM: Ferredoxin%2C 2Fe-2S type~PFAM: Ferredoxin gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2402 Alide2_2403 Alide2_2403 Alide2_2403 2503353 2504081 + DNA polymerase III%2C epsilon subunit SMART: Exonuclease~TIGRFAM: DNA polymerase 3%2C epsilon subunit%3B DNA polymerase III%2C epsilon subunit~KEGG: ajs:Ajs_2138 DNA polymerase III%2C epsilon subunit~PFAM: Exonuclease%2C RNase T/DNA polymerase III gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2403 Alide2_2404 Alide2_2404 Alide2_2404 2504375 2505487 + FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: ajs:Ajs_2136 FAD dependent oxidoreductase gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2404 Alide2_2405 Alide2_2405 Alide2_2405 2505620 2505928 + protein of unknown function DUF883 ElaB PFAM: Protein of unknown function DUF883%2C ElaB~KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2405 Alide2_2406 Alide2_2406 Alide2_2406 2505953 2506357 + hypothetical protein KEGG: dia:Dtpsy_1648 hypothetical protein gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2406 Alide2_2407 Alide2_2407 Alide2_2407 2506359 2506658 + hypothetical protein KEGG: ajs:Ajs_2133 hypothetical protein gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2407 Alide2_2408 Alide2_2408 Alide2_2408 2506711 2507757 - dihydroorotate dehydrogenase TIGRFAM: Dihydroorotate dehydrogenase%2C class 2~KEGG: ajs:Ajs_2132 dihydroorotate dehydrogenase 2~PFAM: Dihydroorotate dehydrogenase%2C class 1/ 2 gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2408 Alide2_2409 Alide2_2409 Alide2_2409 2507793 2508482 + ribose 5-phosphate isomerase TIGRFAM: Ribose 5-phosphate isomerase%2C type A~KEGG: ajs:Ajs_2131 ribose-5-phosphate isomerase A~PFAM: Ribose 5-phosphate isomerase%2C type A gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2409 Alide2_2410 Alide2_2410 Alide2_2410 2508479 2509120 - glutaredoxin PFAM: Glutaredoxin~KEGG: dia:Dtpsy_1652 glutaredoxin gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2410 Alide2_2411 Alide2_2411 Alide2_2411 2509242 2511275 - Oligopeptidase A KEGG: ajs:Ajs_2129 oligopeptidase A~PFAM: Peptidase M3A/M3B%2C thimet/oligopeptidase F gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2411 Alide2_2412 Alide2_2412 Alide2_2412 2511313 2512161 - Methylenetetrahydrofolate dehydrogenase (NADP(+)) KEGG: dac:Daci_3983 bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase/5%2C10-methylene-tetrahydrofolate cyclohydrolase~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2412 Alide2_2413 Alide2_2413 Alide2_2413 2512244 2512870 - two component transcriptional regulator%2C LuxR family KEGG: ctt:CtCNB1_2245 two component transcriptional regulator%2C LuxR~PFAM: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2413 Alide2_2414 Alide2_2414 Alide2_2414 2512867 2515419 - multi-sensor signal transduction histidine kinase TIGRFAM: PAS~PFAM: ATPase-like%2C ATP-binding domain%3B PAS fold%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~KEGG: dia:Dtpsy_1656 PAS/PAC sensor signal transduction histidine kinase~SMART: ATPase-like%2C ATP-binding domain%3B PAS%3B PAC motif%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2414 Alide2_2415 Alide2_2415 Alide2_2415 2515616 2518312 + 2-oxo-acid dehydrogenase E1 subunit%2C homodimeric type TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type~KEGG: dia:Dtpsy_1657 pyruvate dehydrogenase subunit E1~PFAM: Transketolase%2C N-terminal gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2415 Alide2_2416 Alide2_2416 Alide2_2416 2518331 2519980 + pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase TIGRFAM: Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex~KEGG: dia:Dtpsy_1658 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase~PFAM: 2-oxoacid dehydrogenase acyltransferase%2C catalytic domain%3B Biotin/lipoyl attachment%3B E3 binding gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2416 Alide2_2417 Alide2_2417 Alide2_2417 2519994 2521823 + dihydrolipoamide dehydrogenase KEGG: dia:Dtpsy_1659 dihydrolipoamide dehydrogenase~TIGRFAM: Dihydrolipoamide dehydrogenase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Biotin/lipoyl attachment%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2417 Alide2_2418 Alide2_2418 Alide2_2418 2521975 2522256 + hypothetical protein gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2418 Alide2_2419 Alide2_2419 Alide2_2419 2522246 2522620 + hypothetical protein gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2419 Alide2_2420 Alide2_2420 Alide2_2420 2523121 2524089 + hypothetical protein KEGG: aav:Aave_2466 hypothetical protein gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2420 Alide2_2421 Alide2_2421 Alide2_2421 2524156 2525586 + filamentation induced by cAMP protein Fic PFAM: Filamentation induced by cAMP/death on curing-related~KEGG: pna:Pnap_3558 filamentation induced by cAMP protein Fic gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2421 Alide2_2422 Alide2_2422 Alide2_2422 2525645 2526343 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_1341 transcriptional regulator%2C LysR family gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2422 Alide2_2423 Alide2_2423 Alide2_2423 2526383 2526562 + transposase Tn3 KEGG: ajs:Ajs_1877 transposase Tn3 gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2423 Alide2_2424 Alide2_2424 Alide2_2424 2526568 2527029 - pseudogene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2424 Alide2_2425 Alide2_2425 Alide2_2425 2527079 2527505 + pseudogene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2425 Alide2_2426 Alide2_2426 Alide2_2426 2527502 2527924 + IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2-like~KEGG: rfr:Rfer_2710 IS66 Orf2 like gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2426 Alide2_2427 Alide2_2427 Alide2_2427 2527918 2529432 + transposase IS66 PFAM: Transposase%2C IS66~KEGG: dia:Dtpsy_2523 transposase IS66 gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2427 Alide2_2428 Alide2_2428 Alide2_2428 2529485 2529874 - pseudogene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2428 Alide2_2429 Alide2_2429 Alide2_2429 2529892 2530158 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ctt:CtCNB1_1899 transposase IS3/IS911 gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2429 Alide2_2430 Alide2_2430 Alide2_2430 2530198 2530440 + pseudogene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2430 Alide2_2431 Alide2_2431 Alide2_2431 2530458 2531447 + hypothetical protein KEGG: reu:Reut_B3949 hypothetical protein gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2431 Alide2_2432 Alide2_2432 Alide2_2432 2531565 2532506 + S-adenosylmethionine-dependent methyltransferase PFAM: S-adenosylmethionine-dependent methyltransferase~KEGG: dia:Dtpsy_1661 hypothetical protein gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2432 Alide2_2433 Alide2_2433 Alide2_2433 2532636 2533069 - pseudogene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2433 Alide2_2434 Alide2_2434 Alide2_2434 2533166 2534050 + 2-hydroxy-3-oxopropionate reductase KEGG: ajs:Ajs_2093 6-phosphogluconate dehydrogenase%2C NAD-binding~PFAM: 6-phosphogluconate dehydrogenase%2C NAD-binding gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2434 Alide2_2435 Alide2_2435 Alide2_2435 2534054 2534716 - hypothetical protein KEGG: ade:Adeh_1681 PE-PGRS family protein gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2435 Alide2_2436 Alide2_2436 Alide2_2436 2534741 2535247 - Uncharacterized protein family UPF0310 PFAM: Protein of unknown function DUF55~KEGG: aav:Aave_2834 hypothetical protein gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2436 Alide2_2437 Alide2_2437 Alide2_2437 2535244 2535495 - Transglycosylase-associated protein PFAM: Transglycosylase-associated protein~KEGG: aav:Aave_2831 transglycosylase-associated protein gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2437 Alide2_2438 Alide2_2438 Alide2_2438 2535671 2536243 - NLP/P60 protein KEGG: ajs:Ajs_2091 NLP/P60 protein~manually curated~PFAM: NLP/P60 gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2438 Alide2_2439 Alide2_2439 Alide2_2439 2536539 2537963 + amino acid permease-associated region PFAM: Amino acid permease domain~KEGG: dac:Daci_3739 D-alanine/D-serine/glycine permease gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2439 Alide2_2440 Alide2_2440 Alide2_2440 2538064 2539482 + drug resistance transporter%2C EmrB/QacA subfamily KEGG: dia:Dtpsy_1665 drug resistance transporter%2C EmrB/QacA subfamily~TIGRFAM: Drug resistance transporter EmrB/QacA subfamily~PFAM: Major facilitator superfamily MFS-1 gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2440 Alide2_2441 Alide2_2441 Alide2_2441 2539679 2542843 + diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B CHASE%3B PAS fold~KEGG: dia:Dtpsy_1667 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s)~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS%3B PAC motif gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2441 Alide2_2442 Alide2_2442 Alide2_2442 2542858 2543187 + protein of unknown function UPF0060 PFAM: Uncharacterised protein family UPF0060~KEGG: ajs:Ajs_2087 hypothetical protein gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2442 Alide2_2443 Alide2_2443 Alide2_2443 2543342 2544001 - PEP motif putative anchor domain protein KEGG: nar:Saro_2119 hypothetical protein~TIGRFAM: PEP-CTERM anchor~PFAM: PEP-CTERM bacterial gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2443 Alide2_2444 Alide2_2444 Alide2_2444 2544270 2547794 + chromosome segregation protein SMC TIGRFAM: Chromosome segregation protein SMC~PFAM: RecF/RecN/SMC~KEGG: dia:Dtpsy_1669 chromosome segregation protein SMC~SMART: SMCs flexible hinge gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2444 Alide2_2445 Alide2_2445 Alide2_2445 2547805 2548899 + ZipA FtsZ-binding region protein SMART: ZipA%2C C-terminal FtsZ-binding domain~KEGG: dia:Dtpsy_1670 ZipA FtsZ-binding region gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2445 Alide2_2446 Alide2_2446 Alide2_2446 2548911 2551064 + DNA ligase%2C NAD-dependent SMART: NAD-dependent DNA ligase%2C N-terminal%3B Helix-hairpin-helix DNA-binding motif%2C class 1%3B BRCT~TIGRFAM: NAD-dependent DNA ligase~KEGG: ajs:Ajs_2083 DNA ligase%2C NAD-dependent~PFAM: NAD-dependent DNA ligase%2C adenylation%3B Zinc-finger%2C NAD-dependent DNA ligase C4-type%3B BRCT%3B NAD-dependent DNA ligase%2C OB-fold gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2446 Alide2_2447 Alide2_2447 Alide2_2447 2551068 2552003 + Patatin PFAM: Patatin/Phospholipase A2-related~KEGG: ajs:Ajs_2082 patatin gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2447 Alide2_2448 Alide2_2448 Alide2_2448 2552191 2554674 + Peptidoglycan glycosyltransferase KEGG: ajs:Ajs_2081 glycosyl transferase family protein~PFAM: Glycosyl transferase%2C family 51%3B Penicillin-binding protein%2C transpeptidase gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2448 Alide2_2449 Alide2_2449 Alide2_2449 2554685 2555881 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: dia:Dtpsy_1675 major facilitator superfamily MFS_1 gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2449 Alide2_2450 Alide2_2450 Alide2_2450 2555874 2556422 - NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: dia:Dtpsy_1676 NUDIX hydrolase gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2450 Alide2_2451 Alide2_2451 Alide2_2451 2556490 2557185 - fumarylacetoacetate (FAA) hydrolase PFAM: Fumarylacetoacetase%2C C-terminal-like~KEGG: dia:Dtpsy_1677 fumarylacetoacetate (FAA) hydrolase gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2451 Alide2_2452 Alide2_2452 Alide2_2452 2557299 2557964 + maleylacetoacetate isomerase TIGRFAM: Maleylacetoacetate isomerase~KEGG: dia:Dtpsy_1678 maleylacetoacetate isomerase~PFAM: Glutathione S-transferase%2C N-terminal gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2452 Alide2_2453 Alide2_2453 Alide2_2453 2557957 2558805 + Multi-copper polyphenol oxidoreductase%2C laccase KEGG: dia:Dtpsy_1679 protein of unknown function DUF152~TIGRFAM: Multi-copper polyphenol oxidoreductase%2C laccase~PFAM: Multi-copper polyphenol oxidoreductase%2C laccase gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2453 Alide2_2454 Alide2_2454 Alide2_2454 2558725 2559015 - hypothetical protein KEGG: dia:Dtpsy_1680 hypothetical protein gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2454 Alide2_2455 Alide2_2455 Alide2_2455 2559166 2560875 + poly(R)-hydroxyalkanoic acid synthase%2C class I KEGG: dia:Dtpsy_1681 poly(R)-hydroxyalkanoic acid synthase%2C class I~TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase%2C class I~PFAM: Poly-beta-hydroxybutyrate polymerase%2C N-terminal%3B Alpha/beta hydrolase fold-1 gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2455 Alide2_2456 Alide2_2456 Alide2_2456 2560955 2562133 + acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: ajs:Ajs_2073 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2456 Alide2_2457 Alide2_2457 Alide2_2457 2562293 2563030 + acetoacetyl-CoA reductase TIGRFAM: Acetoacetyl-CoA reductase~KEGG: ajs:Ajs_2072 3-ketoacyl-(acyl-carrier-protein) reductase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2457 Alide2_2458 Alide2_2458 Alide2_2458 2563459 2565387 - ABC transporter related protein KEGG: ajs:Ajs_2071 ABC transporter related~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2458 Alide2_2459 Alide2_2459 Alide2_2459 2565443 2566429 - hypothetical protein KEGG: dac:Daci_3609 hypothetical protein gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2459 Alide2_2460 Alide2_2460 Alide2_2460 2566487 2567716 - Butyryl-CoA dehydrogenase KEGG: dac:Daci_3610 acyl-CoA dehydrogenase domain-containing protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2460 Alide2_2461 Alide2_2461 Alide2_2461 2567718 2569298 - o-succinylbenzoate--CoA ligase KEGG: dac:Daci_3611 AMP-dependent synthetase/ligase~PFAM: AMP-dependent synthetase/ligase gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2461 Alide2_2462 Alide2_2462 Alide2_2462 2569403 2570407 - transcriptional regulator%2C LysR family PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~KEGG: dac:Daci_3612 LysR family transcriptional regulator gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2462 Alide2_2463 Alide2_2463 Alide2_2463 2570409 2571332 - protein-(glutamine-N5) methyltransferase%2C ribosomal protein L3-specific TIGRFAM: Ribosomal protein L3-specific%2C glutamine-N5-methyltransferase%3B Modification methylase HemK~KEGG: ajs:Ajs_2070 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase~PFAM: Methyltransferase small gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2463 Alide2_2464 Alide2_2464 Alide2_2464 2571329 2572507 - succinyl-diaminopimelate desuccinylase KEGG: ajs:Ajs_2069 succinyl-diaminopimelate desuccinylase~TIGRFAM: Succinyl-diaminopimelate desuccinylase%2C proteobacteria~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2464 Alide2_2465 Alide2_2465 Alide2_2465 2572531 2573694 - twitching motility protein TIGRFAM: Pilus retraction protein PilT~PFAM: Type II secretion system protein E~KEGG: dia:Dtpsy_1891 twitching motility protein~SMART: ATPase%2C AAA+ type%2C core gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2465 Alide2_2466 Alide2_2466 Alide2_2466 2573757 2574581 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase KEGG: dia:Dtpsy_1890 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-carboxylate N-succinyltransferase~TIGRFAM: 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2466 Alide2_2467 Alide2_2467 Alide2_2467 2574589 2575791 - succinyldiaminopimelate transaminase TIGRFAM: Succinyldiaminopimelate transaminase%2C beta/gammaproteobacteria~KEGG: dia:Dtpsy_1889 succinyldiaminopimelate transaminase~PFAM: Aminotransferase%2C class I/classII gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2467 Alide2_2468 Alide2_2468 Alide2_2468 2575883 2576566 - electron transport complex%2C RnfABCDGE type%2C B subunit KEGG: dia:Dtpsy_1887 electron transport complex%2C RnfABCDGE type%2C B subunit~TIGRFAM: Electron transport complex%2C RnfB~PFAM: Putative Fe-S cluster%3B 4Fe-4S binding domain gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2468 Alide2_2469 Alide2_2469 Alide2_2469 2576582 2577898 - polyhydroxyalkanoate depolymerase%2C intracellular KEGG: ajs:Ajs_2063 polyhydroxyalkanoate depolymerase%2C intracellular~TIGRFAM: Polyhydroxyalkanoate depolymerase~PFAM: PHB de-polymerase%2C C-terminal gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2469 Alide2_2470 Alide2_2470 Alide2_2470 2578074 2579132 - RelA/SpoT domain protein KEGG: dia:Dtpsy_1885 RelA/SpoT domain protein~PFAM: RelA/SpoT~SMART: RelA/SpoT gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2470 Alide2_2471 Alide2_2471 Alide2_2471 2579199 2580149 - TIM-barrel protein%2C yjbN family KEGG: dia:Dtpsy_1883 tRNA-dihydrouridine synthase A~TIGRFAM: tRNA-dihydrouridine synthase%2C TIM-barrel%2C YjbN~PFAM: tRNA-dihydrouridine synthase gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2471 Alide2_2472 Alide2_2472 Alide2_2472 2580434 2580895 + MaoC domain protein dehydratase PFAM: MaoC-like dehydratase~KEGG: pde:Pden_4680 dehydratase gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2472 Alide2_2473 Alide2_2473 Alide2_2473 2580899 2581507 + regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: pde:Pden_4681 TetR family transcriptional regulator gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2473 Alide2_2474 Alide2_2474 Alide2_2474 2581696 2582820 + Saccharopine dehydrogenase PFAM: Saccharopine dehydrogenase / Homospermidine synthase~KEGG: dia:Dtpsy_1846 saccharopine dehydrogenase gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2474 Alide2_2475 Alide2_2475 Alide2_2475 2582817 2584652 - Long-chain-fatty-acid--CoA ligase KEGG: dia:Dtpsy_1847 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2475 Alide2_2476 Alide2_2476 Alide2_2476 2584779 2585414 - transcriptional regulator%2C GntR family KEGG: dia:Dtpsy_1848 transcriptional regulator%2C GntR family~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2476 Alide2_2477 Alide2_2477 Alide2_2477 2585428 2586360 - Hydroxymethylglutaryl-CoA lyase KEGG: axy:AXYL_01256 3-hydroxy-3-methylglutaryl-CoA lyase 1~PFAM: Pyruvate carboxyltransferase gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2477 Alide2_2478 Alide2_2478 Alide2_2478 2586363 2587328 - extra-cytoplasmic solute receptor family protein 24 KEGG: axy:AXYL_01255 extra-cytoplasmic solute receptor family protein 24 gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2478 Alide2_2479 Alide2_2479 Alide2_2479 2587366 2588589 - Formyl-CoA transferase KEGG: axy:AXYL_01254 CoA-transferase family III family protein 9~PFAM: CoA-transferase family III gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2479 Alide2_2480 Alide2_2480 Alide2_2480 2588693 2590129 - transcriptional regulator%2C XRE family KEGG: rpt:Rpal_2644 transcriptional regulator%2C XRE family~PFAM: Protein of unknown function DUF2083%2Ctranscriptional regulator%3B Helix-turn-helix type 3%3B Protein of unknown function DUF955~SMART: Helix-turn-helix type 3 gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2480 Alide2_2481 Alide2_2481 Alide2_2481 2590260 2592401 + methylmalonyl-CoA mutase%2C large subunit TIGRFAM: Methylmalonyl-CoA mutase%2C alpha chain%2C catalytic%3B Methylmalonyl-CoA mutase%2C C-terminal~KEGG: dia:Dtpsy_1849 methylmalonyl-CoA mutase~PFAM: Methylmalonyl-CoA mutase%2C alpha/beta chain%2C catalytic%3B Cobalamin (vitamin B12)-binding gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2481 Alide2_2482 Alide2_2482 Alide2_2482 2592418 2593425 + LAO/AO transport system ATPase KEGG: xtr:100495832 uncharacterized protein CC_2483-like~TIGRFAM: ArgK protein~PFAM: ArgK protein gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2482 Alide2_2483 Alide2_2483 Alide2_2483 2593482 2595014 + Propionyl-CoA carboxylase KEGG: ajs:Ajs_2042 carboxyl transferase~PFAM: Carboxyl transferase gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2483 Alide2_2484 Alide2_2484 Alide2_2484 2595172 2597220 + acetyl-CoA carboxylase%2C biotin carboxylase SMART: Biotin carboxylase%2C C-terminal~TIGRFAM: Acetyl-CoA carboxylase%2C biotin carboxylase~KEGG: dia:Dtpsy_1853 carbamoyl-phosphate synthase L chain ATP-binding~PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal%3B Biotin carboxylase%2C C-terminal%3B Biotin/lipoyl attachment gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2484 Alide2_2485 Alide2_2485 Alide2_2485 2597279 2597740 + lactoylglutathione lyase KEGG: dia:Dtpsy_1854 lactoylglutathione lyase gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2485 Alide2_2486 Alide2_2486 Alide2_2486 2598107 2599180 + Biotin synthase KEGG: ajs:Ajs_2045 biotin synthase~PFAM: Biotin/thiamin synthesis-associated protein%3B Radical SAM~TIGRFAM: Biotin synthase~HAMAP: Biotin synthase~SMART: Biotin/thiamin synthesis-associated protein%3B Elongator protein 3/MiaB/NifB gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2486 Alide2_2487 Alide2_2487 Alide2_2487 2599264 2600271 - twin-arginine translocation pathway signal KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2487 Alide2_2488 Alide2_2488 Alide2_2488 2600393 2601073 + two component transcriptional regulator%2C winged helix family KEGG: pol:Bpro_1450 two component transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2488 Alide2_2489 Alide2_2489 Alide2_2489 2601039 2602427 + integral membrane sensor signal transduction histidine kinase KEGG: pol:Bpro_1451 histidine kinase~PFAM: Two-component sensor kinase N-terminal%3B ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2489 Alide2_2490 Alide2_2490 Alide2_2490 2602424 2603395 + hypothetical protein KEGG: pol:Bpro_1452 hypothetical protein gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2490 Alide2_2491 Alide2_2491 Alide2_2491 2603399 2603845 - OsmC family protein PFAM: Peroxiredoxin%2C OsmC-like protein~KEGG: pna:Pnap_2833 OsmC family protein gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2491 Alide2_2492 Alide2_2492 Alide2_2492 2603842 2604135 - Rhodanese-like protein KEGG: pna:Pnap_2832 rhodanese domain-containing protein~PFAM: Rhodanese-like~SMART: Rhodanese-like gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2492 Alide2_2493 Alide2_2493 Alide2_2493 2604233 2604442 - hypothetical protein KEGG: pna:Pnap_2829 hypothetical protein gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2493 Alide2_2494 Alide2_2494 Alide2_2494 2604476 2605612 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: alv:Alvin_1195 FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2494 Alide2_2495 Alide2_2495 Alide2_2495 2605609 2606901 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2495 Alide2_2496 Alide2_2496 Alide2_2496 2606944 2608365 - outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: pna:Pnap_2830 TolC family type I secretion outer membrane protein gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2496 Alide2_2497 Alide2_2497 Alide2_2497 2608362 2611595 - acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: pna:Pnap_2828 acriflavin resistance protein gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2497 Alide2_2498 Alide2_2498 Alide2_2498 2611597 2612637 - efflux transporter%2C RND family%2C MFP subunit KEGG: pna:Pnap_2827 RND family efflux transporter MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2498 Alide2_2499 Alide2_2499 Alide2_2499 2612737 2613075 + regulatory protein ArsR KEGG: pna:Pnap_2826 regulatory protein%2C ArsR~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2499 Alide2_2500 Alide2_2500 Alide2_2500 2613099 2613194 - pseudogene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2500 Alide2_2501 Alide2_2501 Alide2_2501 2613477 2614262 - 4-hydroxy-2-oxovalerate aldolase KEGG: tjr:TherJR_2256 2-dehydro-3-deoxyglucarate aldolase~PFAM: Aldehyde-lyase domain gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2501 Alide2_2502 Alide2_2502 Alide2_2502 2614298 2614996 - Dimethylmenaquinone methyltransferase PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase~KEGG: rpa:RPA2008 hypothetical protein gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2502 Alide2_2503 Alide2_2503 Alide2_2503 2615006 2616022 - extra-cytoplasmic solute receptor family protein 99 KEGG: axy:AXYL_04163 extra-cytoplasmic solute receptor family protein 99 gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2503 Alide2_2504 Alide2_2504 Alide2_2504 2616047 2617039 - putative secreted protein KEGG: bpt:Bpet3225 putative secreted protein gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2504 Alide2_2505 Alide2_2505 Alide2_2505 2617054 2618094 - transcriptional regulator%2C LacI family KEGG: bxe:Bxe_C0307 LacI family transcription regulator~PFAM: Periplasmic binding protein/LacI transcriptional regulator%3B HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2505 Alide2_2506 Alide2_2506 Alide2_2506 2618091 2618852 - 3-oxoacyl-(acyl-carrier-protein) reductase PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: bxe:Bxe_C0308 putative short-chain dehydrogenase/reductase~SMART: Polyketide synthase/Fatty acid synthase%2C KR gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2506 Alide2_2507 Alide2_2507 Alide2_2507 2618855 2620174 - Histidinol dehydrogenase PFAM: Histidinol dehydrogenase%2C prokaryotic-type~TIGRFAM: Histidinol dehydrogenase%2C prokaryotic-type~HAMAP: Histidinol dehydrogenase%2C prokaryotic-type~KEGG: xtr:100486926 histidinol dehydrogenase 2-like gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2507 Alide2_2508 Alide2_2508 Alide2_2508 2620401 2621006 + Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: ajs:Ajs_2324 methyltransferase type 11 gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2508 Alide2_2509 Alide2_2509 Alide2_2509 2621017 2621685 + DTW domain containing protein PFAM: DTW~KEGG: dia:Dtpsy_1758 DTW domain containing protein gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2509 Alide2_2510 Alide2_2510 Alide2_2510 2621702 2622283 + uncharacterized peroxidase-related enzyme KEGG: dia:Dtpsy_1757 uncharacterized peroxidase-related enzyme~TIGRFAM: Uncharacterised peroxidase-related%3B Alkylhydroperoxidase AhpD core~PFAM: Carboxymuconolactone decarboxylase gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2510 Alide2_2511 Alide2_2511 Alide2_2511 2622348 2624084 - sulfatase PFAM: Sulfatase%3B Domain of unknown function DUF1705~KEGG: ajs:Ajs_1955 sulfatase gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2511 Alide2_2512 Alide2_2512 Alide2_2512 2624089 2624817 - PAP2 (acid phosphatase) superfamily protein-like protein KEGG: dia:Dtpsy_1755 PAP2 (acid phosphatase) superfamily protein-like protein gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2512 Alide2_2513 Alide2_2513 Alide2_2513 2624951 2625625 + two component transcriptional regulator%2C winged helix family KEGG: dia:Dtpsy_1754 two component transcriptional regulator%2C winged helix family~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2513 Alide2_2514 Alide2_2514 Alide2_2514 2625629 2626996 + integral membrane sensor signal transduction histidine kinase KEGG: dia:Dtpsy_1753 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2514 Alide2_2515 Alide2_2515 Alide2_2515 2627012 2627782 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: bbr:BB4306 putative enoyl-CoA hydratase/isomerase family protein gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2515 Alide2_2516 Alide2_2516 Alide2_2516 2627787 2628749 - hypothetical protein KEGG: xtr:100486988 UPF0065 protein in tcbD-tcbE intergenic region-like gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2516 Alide2_2517 Alide2_2517 Alide2_2517 2628791 2629798 - NADPH:quinone reductase KEGG: bbr:BB4304 putative zinc-binding dehydrogenase~PFAM: Alcohol dehydrogenase%2C C-terminal%3B Alcohol dehydrogenase GroES-like gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2517 Alide2_2518 Alide2_2518 Alide2_2518 2629798 2631015 - Formyl-CoA transferase KEGG: bbr:BB4303 putative racemase~PFAM: CoA-transferase family III gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2518 Alide2_2519 Alide2_2519 Alide2_2519 2631153 2632322 + Butyryl-CoA dehydrogenase KEGG: xtr:100487140 short-chain specific acyl-CoA dehydrogenase%2C mitochondrial-like~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2519 Alide2_2520 Alide2_2520 Alide2_2520 2632339 2633394 + hypothetical protein KEGG: bbr:BB1197 hypothetical protein gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2520 Alide2_2521 Alide2_2521 Alide2_2521 2633412 2634548 + Formyl-CoA transferase KEGG: cti:RALTA_B0352 putative acyl-CoA transferases/carnitine dehydratase~PFAM: CoA-transferase family III gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2521 Alide2_2522 Alide2_2522 Alide2_2522 2634700 2635341 + regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: bbr:BB4302 TetR family transcriptional regulator gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2522 Alide2_2523 Alide2_2523 Alide2_2523 2635491 2637206 + Electron-transferring-flavoprotein dehydrogenase KEGG: xtr:100487291 electron transfer flavoprotein-ubiquinone oxidoreductase-like~PFAM: Electron transfer flavoprotein-ubiquinone oxidoreductase%3B FAD dependent oxidoreductase gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2523 Alide2_2524 Alide2_2524 Alide2_2524 2637445 2638413 + ABC transporter substrate binding protein PFAM: ABC transporter substrate binding protein~KEGG: ajs:Ajs_1949 hypothetical protein gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2524 Alide2_2525 Alide2_2525 Alide2_2525 2638495 2639382 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dac:Daci_4312 inner-membrane translocator gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2525 Alide2_2526 Alide2_2526 Alide2_2526 2639395 2640189 + Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_1748 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2526 Alide2_2527 Alide2_2527 Alide2_2527 2640364 2642289 - sigma54 specific transcriptional regulator with PAS/PAC sensor%2C Fis family KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Helix-turn-helix%2C Fis-type~SMART: ATPase%2C AAA+ type%2C core%3B PAS gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2527 Alide2_2528 Alide2_2528 Alide2_2528 2642401 2643276 - alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: vap:Vapar_5337 alpha/beta hydrolase fold protein gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2528 Alide2_2529 Alide2_2529 Alide2_2529 2643290 2644870 - Gluconate 2-dehydrogenase (acceptor) KEGG: azo:azo3873 putative glucase dehydrogenase subunit alpha~PFAM: Glucose-methanol-choline oxidoreductase%2C N-terminal%3B Glucose-methanol-choline oxidoreductase%2C C-terminal gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2529 Alide2_2530 Alide2_2530 Alide2_2530 2644903 2645484 - hypothetical protein KEGG: azo:azo3872 hypothetical protein gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2530 Alide2_2531 Alide2_2531 Alide2_2531 2645541 2646254 - biotin/lipoate A/B protein ligase PFAM: Biotin/lipoate A/B protein ligase~KEGG: azo:azo3871 putative lipoate protein ligase gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2531 Alide2_2532 Alide2_2532 Alide2_2532 2646251 2646964 - Dihydrolipoyllysine-residue acetyltransferase KEGG: azo:azo3870 hypothetical protein~PFAM: 2-oxoacid dehydrogenase acyltransferase%2C catalytic domain gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2532 Alide2_2533 Alide2_2533 Alide2_2533 2646961 2647206 - biotin/lipoyl attachment domain-containing protein PFAM: Biotin/lipoyl attachment~KEGG: rfr:Rfer_3967 biotin/lipoyl attachment gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2533 Alide2_2534 Alide2_2534 Alide2_2534 2647203 2648240 - Pyruvate dehydrogenase (acetyl-transferring) PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~KEGG: rfr:Rfer_3966 transketolase~SMART: Transketolase-like%2C pyrimidine-binding domain gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2534 Alide2_2535 Alide2_2535 Alide2_2535 2648266 2649273 - Pyruvate dehydrogenase (acetyl-transferring) KEGG: azo:azo3867 acetoin dehydrogenase subunit alpha~PFAM: Dehydrogenase%2C E1 component gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2535 Alide2_2536 Alide2_2536 Alide2_2536 2649609 2650070 - transcriptional regulator%2C AsnC family KEGG: dia:Dtpsy_1745 transcriptional regulator%2C AsnC family~PFAM: Transcription regulator AsnC-type%2C C-terminal~SMART: Transcription regulator AsnC-type gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2536 Alide2_2537 Alide2_2537 Alide2_2537 2650356 2651327 + TRAP dicarboxylate transporter%2C DctP subunit KEGG: ajs:Ajs_1941 TRAP dicarboxylate transporter%2C DctP subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2537 Alide2_2538 Alide2_2538 Alide2_2538 2651403 2651897 + Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter%2C DctQ component~KEGG: dia:Dtpsy_1743 tripartite ATP-independent periplasmic transporter DctQ component gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2538 Alide2_2539 Alide2_2539 Alide2_2539 2651894 2653171 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: dia:Dtpsy_1742 TRAP dicarboxylate transporter%2C DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2539 Alide2_2540 Alide2_2540 Alide2_2540 2653190 2654257 - beta-lactamase domain protein KEGG: bpt:Bpet1117 metallo-beta-lactamase family protein~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2540 Alide2_2541 Alide2_2541 Alide2_2541 2654558 2655721 + glycine cleavage system T protein TIGRFAM: Glycine cleavage system T protein~KEGG: xtr:100488488 hypothetical protein LOC100488488~PFAM: Glycine cleavage T-protein%2C N-terminal%3B Glycine cleavage T-protein%2C C-terminal barrel gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2541 Alide2_2542 Alide2_2542 Alide2_2542 2655808 2656182 + glycine cleavage system H protein KEGG: xtr:100488332 glycine cleavage system H protein-like~TIGRFAM: Glycine cleavage H-protein%2C subgroup~PFAM: Glycine cleavage H-protein gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2542 Alide2_2543 Alide2_2543 Alide2_2543 2656311 2659199 + Glycine dehydrogenase (decarboxylating) TIGRFAM: Glycine cleavage system P protein%2C homodimeric~HAMAP: Glycine cleavage system P protein%2C homodimeric~KEGG: dia:Dtpsy_1739 glycine dehydrogenase~PFAM: Glycine cleavage system P-protein%2C N-terminal gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2543 Alide2_2544 Alide2_2544 Alide2_2544 2659358 2659618 + protein of unknown function DUF156 PFAM: Protein of unknown function DUF156~KEGG: ajs:Ajs_2799 hypothetical protein gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2544 Alide2_2545 Alide2_2545 Alide2_2545 2659642 2660757 + S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase KEGG: dia:Dtpsy_2290 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase~TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase~PFAM: Alcohol dehydrogenase GroES-like%3B Alcohol dehydrogenase%2C C-terminal gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2545 Alide2_2546 Alide2_2546 Alide2_2546 2660867 2661727 + S-formylglutathione hydrolase TIGRFAM: S-formylglutathione hydrolase~KEGG: ajs:Ajs_2801 carboxylesterase~PFAM: Putative esterase gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2546 Alide2_2547 Alide2_2547 Alide2_2547 2661738 2661917 - hypothetical protein gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2547 Alide2_2548 Alide2_2548 Alide2_2548 2661991 2662878 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ctt:CtCNB1_2228 transcriptional regulator%2C LysR family gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2548 Alide2_2549 Alide2_2549 Alide2_2549 2662875 2663993 - Radical SAM domain protein KEGG: ajs:Ajs_2803 radical SAM domain-containing protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2549 Alide2_2550 Alide2_2550 Alide2_2550 2664269 2664676 + GreA/GreB family elongation factor PFAM: Transcription elongation factor%2C GreA/GreB%2C C-terminal~KEGG: ajs:Ajs_2805 GreA/GreB family elongation factor gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2550 Alide2_2551 Alide2_2551 Alide2_2551 2664723 2665880 - acyltransferase 3 PFAM: Acyltransferase 3~KEGG: dia:Dtpsy_2295 acyltransferase 3 gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2551 Alide2_2552 Alide2_2552 Alide2_2552 2665947 2666903 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase%2C NPD~KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase%2C NPD gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2552 Alide2_2553 Alide2_2553 Alide2_2553 2666982 2668772 - Butyryl-CoA dehydrogenase KEGG: dia:Dtpsy_2297 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA dehydrogenase%2C N-terminal%2C bacteria gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2553 Alide2_2554 Alide2_2554 Alide2_2554 2668856 2669788 - Electron transfer flavoprotein alpha subunit KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit~PFAM: Electron transfer flavoprotein%2C alpha subunit%2C C-terminal%3B Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2554 Alide2_2555 Alide2_2555 Alide2_2555 2669806 2670555 - Electron transfer flavoprotein alpha/beta-subunit KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit~PFAM: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2555 Alide2_2556 Alide2_2556 Alide2_2556 2670727 2671506 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: ajs:Ajs_2812 enoyl-CoA hydratase gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2556 Alide2_2557 Alide2_2557 Alide2_2557 2671521 2672480 - histone deacetylase superfamily PFAM: Histone deacetylase superfamily~KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2557 Alide2_2558 Alide2_2558 Alide2_2558 2672519 2673439 + ATPase associated with various cellular activities AAA_3 KEGG: dia:Dtpsy_2303 ATPase associated with various cellular activities AAA_3~PFAM: ATPase%2C AAA-3~SMART: ATPase%2C AAA+ type%2C core gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2558 Alide2_2559 Alide2_2559 Alide2_2559 2673439 2674457 + pseudogene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2559 Alide2_2560 Alide2_2560 Alide2_2560 2674537 2676594 + Protein of unknown function DUF3488 KEGG: ajs:Ajs_2816 transglutaminase domain-containing protein~PFAM: Protein of unknown function DUF3488%3B Transglutaminase-like~SMART: Transglutaminase-like gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2560 Alide2_2561 Alide2_2561 Alide2_2561 2676591 2677661 + lytic murein transglycosylase B TIGRFAM: Lytic transglycosylase MltB~KEGG: dia:Dtpsy_2306 lytic murein transglycosylase B gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2561 Alide2_2562 Alide2_2562 Alide2_2562 2677671 2678675 - 1-deoxy-D-xylulose-5-phosphate synthase PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~KEGG: lch:Lcho_4275 transketolase central region~SMART: Transketolase-like%2C pyrimidine-binding domain gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2562 Alide2_2563 Alide2_2563 Alide2_2563 2678690 2679517 - Transketolase KEGG: dac:Daci_0728 transketolase domain-containing protein~PFAM: Transketolase%2C N-terminal gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2563 Alide2_2564 Alide2_2564 Alide2_2564 2679540 2680799 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: pol:Bpro_1457 TRAP dicarboxylate transporter-DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2564 Alide2_2565 Alide2_2565 Alide2_2565 2680796 2681296 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter%2C DctQ component~KEGG: lch:Lcho_0406 tripartite ATP-independent periplasmic transporter DctQ gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2565 Alide2_2566 Alide2_2566 Alide2_2566 2681351 2682334 - TRAP dicarboxylate transporter%2C DctP subunit KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter%2C DctP subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2566 Alide2_2567 Alide2_2567 Alide2_2567 2682371 2683120 - 3-oxoacyl-(acyl-carrier-protein) reductase PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: lch:Lcho_0404 short-chain dehydrogenase/reductase SDR~SMART: Polyketide synthase/Fatty acid synthase%2C KR gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2567 Alide2_2568 Alide2_2568 Alide2_2568 2683261 2684139 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: pol:Bpro_1453 LysR family transcriptional regulator gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2568 Alide2_2569 Alide2_2569 Alide2_2569 2684292 2686274 + transketolase SMART: Transketolase-like%2C pyrimidine-binding domain~TIGRFAM: Transketolase%2C bacterial-like~KEGG: hse:Hsero_0506 transketolase~PFAM: Transketolase%2C N-terminal%3B Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2569 Alide2_2570 Alide2_2570 Alide2_2570 2686289 2687251 + Glycerate dehydrogenase KEGG: bxe:Bxe_B0983 putative 2-hydroxyacid dehydrogenase~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2570 Alide2_2571 Alide2_2571 Alide2_2571 2687271 2688185 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_2307 transcriptional regulator%2C LysR family gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2571 Alide2_2572 Alide2_2572 Alide2_2572 2688300 2689391 + Uncharacterized protein family UPF0324 KEGG: dia:Dtpsy_2308 hypothetical protein~TIGRFAM: Uncharacterised protein family UPF0324%2C bacteria~PFAM: Uncharacterised protein family UPF0324%2C prokaryote gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2572 Alide2_2573 Alide2_2573 Alide2_2573 2689393 2690670 - hypothetical protein KEGG: dia:Dtpsy_2309 putative transporter signal peptide protein gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2573 Alide2_2574 Alide2_2574 Alide2_2574 2690703 2691515 - Protein of unknown function DUF2242 PFAM: Protein of unknown function DUF2242~KEGG: dia:Dtpsy_2310 putative lipoprotein gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2574 Alide2_2575 Alide2_2575 Alide2_2575 2691634 2692845 - protein of unknown function DUF214 PFAM: Domain of unknown function DUF214%2C ABC transporter permease~KEGG: dia:Dtpsy_2312 protein of unknown function DUF214 gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2575 Alide2_2576 Alide2_2576 Alide2_2576 2692842 2693597 - Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_2313 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2576 Alide2_2577 Alide2_2577 Alide2_2577 2693594 2694943 - efflux transporter%2C RND family%2C MFP subunit KEGG: dia:Dtpsy_2314 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2577 Alide2_2578 Alide2_2578 Alide2_2578 2694940 2696346 - RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: dia:Dtpsy_2315 RND efflux system%2C outer membrane lipoprotein%2C NodT family~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2578 Alide2_2579 Alide2_2579 Alide2_2579 2696469 2697512 - metalloendopeptidase%2C glycoprotease family TIGRFAM: Peptidase M22%2C glycoprotease%2C subgroup%3B Peptidase M22%2C O-sialoglycoprotein peptidase~KEGG: dia:Dtpsy_2317 putative DNA-binding/iron metalloprotein/AP endonuclease~PFAM: Peptidase M22%2C glycoprotease gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2579 Alide2_2580 Alide2_2580 Alide2_2580 2697535 2697972 - putative signal transduction protein with CBS domains KEGG: dia:Dtpsy_2323 putative signal transduction protein with CBS domains~PFAM: Cystathionine beta-synthase%2C core~SMART: Cystathionine beta-synthase%2C core gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2580 Alide2_2581 Alide2_2581 Alide2_2581 2698057 2698698 - calcium-binding EF-hand-containing protein KEGG: dia:Dtpsy_2324 calcium-binding EF-hand-containing protein gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2581 Alide2_2582 Alide2_2582 Alide2_2582 2699101 2700339 + efflux transporter%2C RND family%2C MFP subunit KEGG: aav:Aave_2112 RND family efflux transporter MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2582 Alide2_2583 Alide2_2583 Alide2_2583 2700349 2703492 + transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family KEGG: dia:Dtpsy_2326 transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family~TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1~PFAM: Acriflavin resistance protein gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2583 Alide2_2584 Alide2_2584 Alide2_2584 2703489 2704997 + RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: dia:Dtpsy_2327 RND efflux system%2C outer membrane lipoprotein%2C NodT family~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2584 Alide2_2585 Alide2_2585 Alide2_2585 2705251 2707701 + nitrite reductase (NAD(P)H)%2C large subunit TIGRFAM: Nitrite reductase [NAD(P)H] large subunit%2C NirB~KEGG: ajs:Ajs_2839 assimilatory nitrite reductase (NAD(P)H) large subunit precursor~PFAM: Nitrite/sulphite reductase 4Fe-4S domain%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B BFD-like [2Fe-2S]-binding domain%3B Nitrite/sulphite reductase%2C hemoprotein beta-component%2C ferrodoxin-like gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2585 Alide2_2586 Alide2_2586 Alide2_2586 2707774 2708151 + nitrite reductase (NAD(P)H)%2C small subunit KEGG: ajs:Ajs_2840 assimilatory nitrite reductase (NAD(P)H) small subunit~TIGRFAM: Nitrite reductase [NAD(P)H] large subunit%2C NirD~PFAM: Rieske [2Fe-2S] iron-sulphur domain gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2586 Alide2_2587 Alide2_2587 Alide2_2587 2708148 2710940 + Nitrate reductase PFAM: Molybdopterin oxidoreductase%3B Molybdopterin oxidoreductase%2C Fe4S4 domain%3B Molydopterin dinucleotide-binding domain%3B BFD-like [2Fe-2S]-binding domain~KEGG: ajs:Ajs_2841 assimilatory nitrate reductase (NADH) alpha subunit apoprotein~SMART: Molybdopterin oxidoreductase%2C Fe4S4 domain gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2587 Alide2_2588 Alide2_2588 Alide2_2588 2710991 2712214 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: pol:Bpro_3273 major facilitator transporter gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2588 Alide2_2589 Alide2_2589 Alide2_2589 2712254 2712829 - SNARE associated Golgi protein-like protein PFAM: SNARE associated Golgi protein~KEGG: net:Neut_2429 hypothetical protein gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2589 Alide2_2590 Alide2_2590 Alide2_2590 2712965 2713933 + Glycosyl transferase%2C family 3 PFAM: Glycosyl transferase%2C family 3%2C N-terminal~KEGG: ajs:Ajs_2842 glycosyl transferase family protein gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2590 Alide2_2591 Alide2_2591 Alide2_2591 2713930 2714691 + uroporphyrin-III C-methyltransferase TIGRFAM: Uroporphyrin-III C-methyltransferase%2C C-terminal~KEGG: ajs:Ajs_2843 uroporphyrinogen-III C-methyltransferase~PFAM: Tetrapyrrole methylase gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2591 Alide2_2592 Alide2_2592 Alide2_2592 2714692 2715201 - thioesterase superfamily protein PFAM: Thioesterase superfamily~KEGG: dia:Dtpsy_2333 thioesterase superfamily protein gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2592 Alide2_2593 Alide2_2593 Alide2_2593 2715266 2716507 + HI0933 family protein KEGG: dia:Dtpsy_2335 HI0933 family protein~TIGRFAM: Conserved hypothetical protein CHP00275%2C flavoprotein HI0933-like~PFAM: Conserved hypothetical protein CHP00275%2C flavoprotein HI0933-like gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2593 Alide2_2594 Alide2_2594 Alide2_2594 2716618 2717829 + NnrS family protein PFAM: NnrS~KEGG: ajs:Ajs_2847 NnrS family protein gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2594 Alide2_2595 Alide2_2595 Alide2_2595 2717882 2718166 + Protein of unknown function DUF2249 PFAM: Protein of unknown function DUF2249~KEGG: dia:Dtpsy_2337 hypothetical protein gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2595 Alide2_2596 Alide2_2596 Alide2_2596 2718236 2718790 - FeS assembly SUF system protein SufT KEGG: dia:Dtpsy_2338 FeS assembly SUF system protein SufT~TIGRFAM: FeS assembly SUF system protein SufT%2C putative~PFAM: Domain of unknown function DUF59 gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2596 Alide2_2597 Alide2_2597 Alide2_2597 2718787 2719251 - SUF system FeS assembly protein%2C NifU family KEGG: dia:Dtpsy_2339 SUF system FeS assembly protein%2C NifU family~TIGRFAM: SUF system FeS cluster assembly%2C SufU scaffold~PFAM: NIF system FeS cluster assembly%2C NifU%2C N-terminal gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2597 Alide2_2598 Alide2_2598 Alide2_2598 2719248 2720528 - cysteine desulfurase%2C SufS subfamily TIGRFAM: Cysteine desulfurase%2C SufS~KEGG: ajs:Ajs_2851 aminotransferase%2C class V~PFAM: Aminotransferase%2C class V/Cysteine desulfurase gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2598 Alide2_2599 Alide2_2599 Alide2_2599 2720521 2721756 - SufBD protein PFAM: SUF system FeS cluster assembly%2C SufBD~KEGG: ajs:Ajs_2852 SufBD protein gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2599 Alide2_2600 Alide2_2600 Alide2_2600 2721761 2722534 - FeS assembly ATPase SufC TIGRFAM: ATPase SufC%2C SUF system FeS cluster assembly~PFAM: ABC transporter-like~KEGG: dia:Dtpsy_2342 FeS assembly ATPase SufC~SMART: ATPase%2C AAA+ type%2C core gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2600 Alide2_2601 Alide2_2601 Alide2_2601 2722605 2724107 - FeS assembly protein SufB KEGG: dia:Dtpsy_2343 cysteine desulfurase activator complex subunit SufB~TIGRFAM: SUF system FeS cluster assembly%2C SufB~PFAM: SUF system FeS cluster assembly%2C SufBD gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2601 Alide2_2602 Alide2_2602 Alide2_2602 2724386 2724598 + 30S ribosomal protein S21 TIGRFAM: Ribosomal protein S21~HAMAP: Ribosomal protein S21~KEGG: vap:Vapar_3540 30S ribosomal protein S21~PFAM: Ribosomal protein S21 gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2602 Alide2_2603 Alide2_2603 Alide2_2603 2724684 2725130 + GatB/YqeY domain-containing protein KEGG: aav:Aave_2091 GatB/YqeY domain-containing protein gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2603 Alide2_2604 Alide2_2604 Alide2_2604 2725144 2726535 - metal dependent phosphohydrolase PFAM: Metal-dependent phosphohydrolase%2C HD subdomain~KEGG: ajs:Ajs_1963 metal dependent phosphohydrolase gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2604 Alide2_2605 Alide2_2605 Alide2_2605 2726686 2727324 - 3-oxoacid CoA-transferase%2C B subunit SMART: Coenzyme A transferase~TIGRFAM: 3-oxoacid CoA-transferase%2C subunit B~KEGG: dia:Dtpsy_1763 3-oxoacid CoA-transferase%2C B subunit~PFAM: Coenzyme A transferase gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2605 Alide2_2606 Alide2_2606 Alide2_2606 2727328 2728035 - 3-oxoacid CoA-transferase%2C A subunit SMART: Coenzyme A transferase~TIGRFAM: 3-oxoacid CoA-transferase%2C subunit A~KEGG: pna:Pnap_2658 3-oxoacid CoA-transferase%2C A subunit~PFAM: Coenzyme A transferase gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2606 Alide2_2607 Alide2_2607 Alide2_2607 2728119 2728664 + transcriptional regulator%2C LuxR family TIGRFAM: PAS~PFAM: Transcription regulator LuxR%2C C-terminal%3B PAS fold~KEGG: dia:Dtpsy_1761 transcriptional regulator%2C LuxR family~SMART: Transcription regulator LuxR%2C C-terminal%3B PAS gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2607 Alide2_2608 Alide2_2608 Alide2_2608 2728802 2730043 + acyltransferase 3 PFAM: Acyltransferase 3~KEGG: ajs:Ajs_2326 acyltransferase 3 gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2608 Alide2_2609 Alide2_2609 Alide2_2609 2730270 2731616 + amino-acid N-acetyltransferase KEGG: ajs:Ajs_2327 N-acetylglutamate synthase~TIGRFAM: Amino-acid N-acetyltransferase (ArgA)~PFAM: Aspartate/glutamate/uridylate kinase%3B GCN5-related N-acetyltransferase (GNAT) domain gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2609 Alide2_2610 Alide2_2610 Alide2_2610 2732094 2732441 + Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: bam:Bamb_3393 endoribonuclease L-PSP gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2610 Alide2_2611 Alide2_2611 Alide2_2611 2732468 2733712 + D-amino-acid dehydrogenase KEGG: bam:Bamb_3394 FAD dependent oxidoreductase~PFAM: FAD dependent oxidoreductase gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2611 Alide2_2612 Alide2_2612 Alide2_2612 2733709 2734485 + Asp/Glu/hydantoin racemase PFAM: Asp/Glu/hydantoin racemase~KEGG: vei:Veis_4472 Asp/Glu racemase gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2612 Alide2_2613 Alide2_2613 Alide2_2613 2734547 2735680 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: vei:Veis_4471 extracellular ligand-binding receptor gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2613 Alide2_2614 Alide2_2614 Alide2_2614 2735736 2736629 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: vei:Veis_4470 inner-membrane translocator gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2614 Alide2_2615 Alide2_2615 Alide2_2615 2736622 2737509 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: vei:Veis_4469 inner-membrane translocator gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2615 Alide2_2616 Alide2_2616 Alide2_2616 2737506 2738288 + Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: vei:Veis_4468 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2616 Alide2_2617 Alide2_2617 Alide2_2617 2738288 2739007 + Polyamine-transporting ATPase PFAM: ABC transporter-like~KEGG: vei:Veis_4467 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2617 Alide2_2618 Alide2_2618 Alide2_2618 2739031 2740152 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: bcm:Bcenmc03_6241 extracellular ligand-binding receptor gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2618 Alide2_2619 Alide2_2619 Alide2_2619 2740217 2741125 - dihydrodipicolinate synthase KEGG: tbd:Tbd_1098 dihydrodipicolinate synthase~TIGRFAM: Dihydrodipicolinate synthase subfamily~PFAM: Dihydrodipicolinate synthetase gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2619 Alide2_2620 Alide2_2620 Alide2_2620 2741244 2744690 - Pyruvate/ketoisovalerate oxidoreductase PFAM: Pyruvate/ketoisovalerate oxidoreductase%2C catalytic domain~KEGG: xau:Xaut_0390 indolepyruvate ferredoxin oxidoreductase gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2620 Alide2_2621 Alide2_2621 Alide2_2621 2744907 2745689 + transcriptional regulator%2C GntR family KEGG: vei:Veis_4063 GntR family transcriptional regulator~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2621 Alide2_2622 Alide2_2622 Alide2_2622 2745717 2747342 - metal dependent phosphohydrolase with GAF sensor KEGG: dar:Daro_3357 hypothetical protein~PFAM: GAF%3B Metal-dependent phosphohydrolase%2C HD subdomain~SMART: GAF%3B Metal-dependent phosphohydrolase%2C HD domain gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2622 Alide2_2623 Alide2_2623 Alide2_2623 2747458 2747967 - Disulfide bond formation protein B KEGG: dia:Dtpsy_1523 disulphide bond formation protein DsbB~HAMAP: Disulphide bond formation protein DsbB~PFAM: Disulphide bond formation protein DsbB/BdbC gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2623 Alide2_2624 Alide2_2624 Alide2_2624 2748029 2749156 - sulfate ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Sulphate transport system permease protein 1~KEGG: dia:Dtpsy_1522 sulfate ABC transporter%2C ATPase subunit~PFAM: ABC transporter-like gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2624 Alide2_2625 Alide2_2625 Alide2_2625 2749191 2750084 - sulfate ABC transporter%2C inner membrane subunit CysW KEGG: xtr:100493368 sulfate transport system permease protein cysW-like~TIGRFAM: Sulphate ABC transporter%2C permease protein CysW%3B Sulphate ABC transporter permease protein 2~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2625 Alide2_2626 Alide2_2626 Alide2_2626 2750081 2750947 - sulfate ABC transporter%2C inner membrane subunit CysT KEGG: xtr:100493198 probable sulfate transport system permease protein cysT-like~TIGRFAM: Sulphate ABC transporter%2C permease protein CysT%3B Sulphate ABC transporter permease protein 2~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2626 Alide2_2627 Alide2_2627 Alide2_2627 2750952 2751953 - sulfate ABC transporter%2C periplasmic sulfate-binding protein KEGG: dia:Dtpsy_1519 sulfate ABC transporter%2C periplasmic sulfate-binding protein~TIGRFAM: Thiosulphate-binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1 gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2627 Alide2_2628 Alide2_2628 Alide2_2628 2752062 2752652 - protein of unknown function DUF1234 PFAM: Protein of unknown function DUF1234~KEGG: aav:Aave_2544 hypothetical protein gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2628 Alide2_2629 Alide2_2629 Alide2_2629 2752740 2753657 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_1518 transcriptional regulator%2C LysR family gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2629 Alide2_2630 Alide2_2630 Alide2_2630 2753785 2754435 + NAD(P)H dehydrogenase (quinone) PFAM: Flavodoxin-like fold~KEGG: dia:Dtpsy_1517 NAD(P)H dehydrogenase (quinone) gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2630 Alide2_2631 Alide2_2631 Alide2_2631 2754493 2755089 - NADPH-dependent FMN reductase PFAM: NADPH-dependent FMN reductase~KEGG: dia:Dtpsy_1516 NADPH-dependent FMN reductase gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2631 Alide2_2632 Alide2_2632 Alide2_2632 2755136 2755936 - lipoprotein%2C YaeC family KEGG: dia:Dtpsy_1515 lipoprotein%2C YaeC family~TIGRFAM: Lipoprotein YaeC~PFAM: NLPA lipoprotein gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2632 Alide2_2633 Alide2_2633 Alide2_2633 2756042 2756707 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: dia:Dtpsy_1513 binding-protein-dependent transport systems inner membrane component gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2633 Alide2_2634 Alide2_2634 Alide2_2634 2756707 2757750 - Phosphonate-transporting ATPase PFAM: ABC transporter-like%3B NIL domain~KEGG: dia:Dtpsy_1512 DL-methionine transporter ATP-binding subunit~SMART: NIL domain%3B ATPase%2C AAA+ type%2C core gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2634 Alide2_2635 Alide2_2635 Alide2_2635 2757859 2758248 - membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) PFAM: Membrane-associated%2C eicosanoid/glutathione metabolism (MAPEG) protein~KEGG: ajs:Ajs_2347 membrane protein-like protein gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2635 Alide2_2636 Alide2_2636 Alide2_2636 2758259 2758849 - recombination protein RecR KEGG: dia:Dtpsy_1509 recombination protein RecR~TIGRFAM: RecR protein~SMART: Toprim domain%3B Helix-hairpin-helix DNA-binding motif%2C class 1 gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2636 Alide2_2637 Alide2_2637 Alide2_2637 2758869 2759201 - Uncharacterized protein family UPF0133 KEGG: ctt:CtCNB1_1631 hypothetical protein~TIGRFAM: Uncharacterised protein family UPF0133~PFAM: Uncharacterised protein family UPF0133 gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2637 Alide2_2638 Alide2_2638 Alide2_2638 2759233 2761089 - DNA polymerase III%2C subunits gamma and tau SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: DNA polymerase III%2C subunit gamma/ tau~KEGG: dia:Dtpsy_1507 DNA polymerase III%2C subunits gamma and tau~PFAM: DNA polymerase III%2C gamma subunit%2C domain III%3B ATPase%2C AAA-type%2C core gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2638 Alide2_2639 Alide2_2639 Alide2_2639 2761272 2762099 - transcriptional regulator%2C ModE family KEGG: gpb:HDN1F_09840 molybdopterin-binding protein~TIGRFAM: Molybdenum-binding protein%2C N-terminal%3B Molybdenum-pterin binding~PFAM: Transport-associated OB%2C type 1%3B HTH transcriptional regulator%2C LysR gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2639 Alide2_2640 Alide2_2640 Alide2_2640 2762136 2762987 - modD protein TIGRFAM: Putative molybdenum utilization protein ModD~KEGG: cli:Clim_0375 ModD protein~PFAM: Quinolinate phosphoribosyl transferase%2C C-terminal domain%3B Quinolinate phosphoribosyl transferase%2C N-terminal gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2640 Alide2_2641 Alide2_2641 Alide2_2641 2762984 2763646 - molybdate ABC transporter%2C inner membrane subunit KEGG: dac:Daci_3882 binding-protein-dependent transport systems inner membrane component~TIGRFAM: Molybdate ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2641 Alide2_2642 Alide2_2642 Alide2_2642 2763647 2764363 - molybdenum ABC transporter%2C periplasmic molybdate-binding protein TIGRFAM: Molybdenum ABC transporter%2C periplasmic binding protein~KEGG: dac:Daci_3883 molybdenum ABC transporter periplasmic molybdate-binding protein gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2642 Alide2_2643 Alide2_2643 Alide2_2643 2764375 2765178 - protein of unknown function DUF364 PFAM: Protein of unknown function DUF364~KEGG: mta:Moth_1420 hypothetical protein gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2643 Alide2_2644 Alide2_2644 Alide2_2644 2765172 2765966 - Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: bpt:Bpet1277 hypothetical protein gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2644 Alide2_2645 Alide2_2645 Alide2_2645 2765963 2766724 - Iron-chelate-transporting ATPase PFAM: ABC transporter-like~KEGG: dac:Daci_4650 ABC transporter-like protein~SMART: ATPase%2C AAA+ type%2C core gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2645 Alide2_2646 Alide2_2646 Alide2_2646 2766721 2767719 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease protein~KEGG: dac:Daci_4649 transport system permease gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2646 Alide2_2647 Alide2_2647 Alide2_2647 2767778 2768812 - ABC-type transporter%2C periplasmic subunit PFAM: Periplasmic binding protein~KEGG: ctt:CtCNB1_0597 periplasmic binding protein gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2647 Alide2_2648 Alide2_2648 Alide2_2648 2768809 2769348 - Protein of unknown function DUF2478 PFAM: Protein of unknown function DUF2478~KEGG: bpt:Bpet1276 hypothetical protein gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2648 Alide2_2649 Alide2_2649 Alide2_2649 2769428 2771407 - TonB-dependent receptor plug PFAM: TonB-dependent receptor%2C plug%3B TonB-dependent receptor%2C beta-barrel~KEGG: ctt:CtCNB1_0594 TonB-dependent receptor gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2649 Alide2_2650 Alide2_2650 Alide2_2650 2771696 2772286 + hypothetical protein KEGG: dia:Dtpsy_1506 hypothetical protein gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2650 Alide2_2651 Alide2_2651 Alide2_2651 2772268 2773644 - uncharacterized flavoprotein%2C PP_4765 family KEGG: dia:Dtpsy_1505 HI0933 family protein~TIGRFAM: Conserved hyptotheical protein CHP03862%2C flavoprotein%2C PP4765%3B Conserved hypothetical protein CHP00275%2C flavoprotein HI0933-like~PFAM: Conserved hypothetical protein CHP00275%2C flavoprotein HI0933-like gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2651 Alide2_2652 Alide2_2652 Alide2_2652 2773885 2774769 + Pirin domain protein PFAM: Pirin%2C N-terminal%3B Pirin%2C C-terminal~KEGG: bpe:BP2937 hypothetical protein gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2652 Alide2_2653 Alide2_2653 Alide2_2653 2774855 2775736 + Pirin domain protein PFAM: Pirin%2C N-terminal%3B Pirin%2C C-terminal~KEGG: pag:PLES_41041 putative pirin protein gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2653 Alide2_2654 Alide2_2654 Alide2_2654 2775743 2779030 - UvrD/REP helicase PFAM: DNA helicase%2C UvrD/REP type~KEGG: dia:Dtpsy_1503 UvrD/REP helicase gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2654 Alide2_2655 Alide2_2655 Alide2_2655 2779023 2781590 - exonuclease-like protein KEGG: ajs:Ajs_2356 exonuclease-like protein gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2655 Alide2_2656 Alide2_2656 Alide2_2656 2781693 2782025 + thioredoxin KEGG: vap:Vapar_2323 thioredoxin~TIGRFAM: Thioredoxin~PFAM: Thioredoxin domain gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2656 Alide2_2657 Alide2_2657 Alide2_2657 2782252 2783514 + transcription termination factor Rho TIGRFAM: Transcription termination factor Rho~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%3B Rho termination factor%2C N-terminal%3B Rho termination factor%2C RNA-binding~KEGG: ajs:Ajs_2358 transcription termination factor Rho~SMART: Cold shock protein%3B ATPase%2C AAA+ type%2C core%3B Rho termination factor%2C N-terminal gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2657 Alide2_2658 Alide2_2658 Alide2_2658 2783601 2783855 + ribosomal protein L31 KEGG: dia:Dtpsy_1495 ribosomal protein L31~TIGRFAM: Ribosomal protein L31~PFAM: Ribosomal protein L31 gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2658 Alide2_2659 Alide2_2659 Alide2_2659 2783994 2785688 + putative inner membrane transmembrane protein KEGG: ajs:Ajs_2364 putative inner membrane transmembrane protein gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2659 Alide2_2660 Alide2_2660 Alide2_2660 2785688 2787046 + MATE efflux family protein KEGG: ajs:Ajs_2365 MATE efflux family protein~TIGRFAM: Multi antimicrobial extrusion protein~PFAM: Multi antimicrobial extrusion protein gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2660 Alide2_2661 Alide2_2661 Alide2_2661 2787009 2788385 - PAS/PAC sensor signal transduction histidine kinase TIGRFAM: Signal transduction histidine kinase%2C phosphate regulon sensor PhoR~PFAM: ATPase-like%2C ATP-binding domain%3B PAS fold%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~KEGG: dia:Dtpsy_1492 PAS/PAC sensor signal transduction histidine kinase~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2661 Alide2_2662 Alide2_2662 Alide2_2662 2788453 2789154 - two component transcriptional regulator PhoB%2C winged helix family TIGRFAM: Signal transduction response regulator%2C phosphate regulon transcriptional regulatory protein PhoB~PFAM: Signal transduction response regulator%2C C-terminal%3B Signal transduction response regulator%2C receiver domain~KEGG: ajs:Ajs_2367 two component transcriptional regulator~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2662 Alide2_2663 Alide2_2663 Alide2_2663 2789151 2789852 - phosphate uptake regulator%2C PhoU KEGG: ajs:Ajs_2368 phosphate uptake regulator%2C PhoU~TIGRFAM: PhoU~PFAM: PhoU gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2663 Alide2_2664 Alide2_2664 Alide2_2664 2789849 2790637 - phosphate ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core%3B K Homology~TIGRFAM: Phosphate transport system permease protein 1~KEGG: aav:Aave_2629 phosphate ABC transporter%2C ATPase subunit~PFAM: ABC transporter-like gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2664 Alide2_2665 Alide2_2665 Alide2_2665 2790668 2791549 - phosphate ABC transporter%2C inner membrane subunit PstA KEGG: ajs:Ajs_2370 phosphate transporter permease subunit PtsA~TIGRFAM: Phosphate transport system permease protein 2~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2665 Alide2_2666 Alide2_2666 Alide2_2666 2791546 2792568 - phosphate ABC transporter%2C inner membrane subunit PstC KEGG: dia:Dtpsy_1487 phosphate ABC transporter%2C inner membrane subunit PstC~TIGRFAM: Phosphate ABC transporter%2C permease protein PstC~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2666 Alide2_2667 Alide2_2667 Alide2_2667 2792632 2793672 - phosphate ABC transporter%2C periplasmic phosphate-binding protein KEGG: dia:Dtpsy_1486 phosphate ABC transporter%2C periplasmic phosphate-binding protein~TIGRFAM: Periplasmic phosphate binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1 gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2667 Alide2_2668 Alide2_2668 Alide2_2668 2793932 2795413 + Ppx/GppA phosphatase KEGG: dia:Dtpsy_1483 Ppx/GppA phosphatase~PFAM: Ppx/GppA phosphatase gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2668 Alide2_2669 Alide2_2669 Alide2_2669 2795490 2795951 - putative phosphohistidine phosphatase%2C SixA KEGG: ajs:Ajs_2377 phosphohistidine phosphatase%2C SixA~PFAM: Histidine phosphatase superfamily%2C clade-1~SMART: Histidine phosphatase superfamily%2C clade-1 gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2669 Alide2_2670 Alide2_2670 Alide2_2670 2795951 2798125 - Polyphosphate kinase PFAM: Polyphosphate kinase~TIGRFAM: Polyphosphate kinase~HAMAP: Polyphosphate kinase~KEGG: dia:Dtpsy_1480 polyphosphate kinase gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2670 Alide2_2671 Alide2_2671 Alide2_2671 2798388 2799206 - ornithine-acyl(acyl carrier protein) N-acyltransferase KEGG: dia:Dtpsy_1479 ornithine-acyl(acyl carrier protein) N-acyltransferase gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2671 Alide2_2672 Alide2_2672 Alide2_2672 2799446 2801239 + diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted~KEGG: ajs:Ajs_2380 diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS%3B PAC motif gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2672 Alide2_2673 Alide2_2673 Alide2_2673 2801331 2802665 - phosphoglucosamine mutase TIGRFAM: Phosphoglucosamine mutase~KEGG: dia:Dtpsy_1477 phosphoglucosamine mutase~PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II%3B Alpha-D-phosphohexomutase%2C C-terminal gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2673 Alide2_2674 Alide2_2674 Alide2_2674 2802655 2803551 - dihydropteroate synthase TIGRFAM: Dihydropteroate synthase~KEGG: ajs:Ajs_2382 dihydropteroate synthase~PFAM: Pterin-binding gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2674 Alide2_2675 Alide2_2675 Alide2_2675 2803620 2805581 - ATP-dependent metalloprotease FtsH SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Peptidase M41%2C FtsH~KEGG: dia:Dtpsy_1475 ATP-dependent metalloprotease FtsH~PFAM: Peptidase M41%3B ATPase%2C AAA-type%2C core%3B Peptidase M41%2C FtsH extracellular gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2675 Alide2_2676 Alide2_2676 Alide2_2676 2805679 2806341 - ribosomal RNA methyltransferase RrmJ/FtsJ PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ~KEGG: dia:Dtpsy_1474 ribosomal RNA methyltransferase RrmJ/FtsJ gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2676 Alide2_2677 Alide2_2677 Alide2_2677 2806362 2806832 + protein of unknown function UPF0044 PFAM: RNA-binding%2C CRM domain~KEGG: dia:Dtpsy_1473 protein of unknown function UPF0044 gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2677 Alide2_2678 Alide2_2678 Alide2_2678 2806832 2807575 + hypothetical protein KEGG: dac:Daci_4928 hypothetical protein gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2678 Alide2_2679 Alide2_2679 Alide2_2679 2807576 2807983 - hypothetical protein KEGG: ajs:Ajs_2388 hypothetical protein gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2679 Alide2_2680 Alide2_2680 Alide2_2680 2807986 2808462 - transcription elongation factor GreA KEGG: dia:Dtpsy_1469 transcription elongation factor GreA~TIGRFAM: Transcription elongation factor GreA~PFAM: Transcription elongation factor%2C GreA/GreB%2C N-terminal%3B Transcription elongation factor%2C GreA/GreB%2C C-terminal gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2680 Alide2_2681 Alide2_2681 Alide2_2681 2808589 2811840 - carbamoyl-phosphate synthase%2C large subunit SMART: Methylglyoxal synthase-like domain~TIGRFAM: Carbamoyl-phosphate synthase%2C large subunit~KEGG: dia:Dtpsy_1458 carbamoyl-phosphate synthase%2C large subunit~PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl-phosphate synthetase%2C large subunit%2C oligomerisation%3B Methylglyoxal synthase-like domain%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2681 Alide2_2682 Alide2_2682 Alide2_2682 2811840 2813018 - carbamoyl-phosphate synthase%2C small subunit TIGRFAM: Carbamoyl-phosphate synthase%2C small subunit~KEGG: aav:Aave_2610 carbamoyl-phosphate synthase%2C small subunit~PFAM: Carbamoyl-phosphate synthase%2C small subunit%2C N-terminal%3B Glutamine amidotransferase class-I%2C C-terminal gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2682 Alide2_2683 Alide2_2683 Alide2_2683 2813518 2814939 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: dar:Daro_2526 phage integrase gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2683 Alide2_2684 Alide2_2684 Alide2_2684 2815145 2815390 + Prophage CP4-57 regulatory PFAM: Prophage CP4-57 regulatory gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2684 Alide2_2685 Alide2_2685 Alide2_2685 2815527 2815850 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2685 Alide2_2686 Alide2_2686 Alide2_2686 2815847 2816762 + pseudogene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2686 Alide2_2687 Alide2_2687 Alide2_2687 2816797 2818170 - hypothetical protein KEGG: sfu:Sfum_1898 hypothetical protein gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2687 Alide2_2688 Alide2_2688 Alide2_2688 2818476 2819978 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ppu:PP_2501 phage integrase%2C putative gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2688 Alide2_2689 Alide2_2689 Alide2_2689 2820227 2820958 - hypothetical protein KEGG: pwa:Pecwa_1723 hypothetical protein gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2689 Alide2_2690 Alide2_2690 Alide2_2690 2820960 2821943 - RimK domain protein ATP-grasp PFAM: ATP-grasp fold%2C RimK-type~KEGG: psb:Psyr_2651 hypothetical protein gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2690 Alide2_2691 Alide2_2691 Alide2_2691 2821952 2822323 - hypothetical protein KEGG: pwa:Pecwa_1721 hypothetical protein gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2691 Alide2_2692 Alide2_2692 Alide2_2692 2822467 2822904 - hypothetical protein gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2692 Alide2_2693 Alide2_2693 Alide2_2693 2823025 2824521 - hypothetical protein KEGG: rcu:RCOM_1905080 hypothetical protein gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2693 Alide2_2694 Alide2_2694 Alide2_2694 2824730 2824924 - pseudogene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2694 Alide2_2695 Alide2_2695 Alide2_2695 2824949 2825182 - phage transcriptional regulator%2C AlpA KEGG: dze:Dd1591_3709 phage transcriptional regulator%2C AlpA~manually curated~PFAM: Prophage CP4-57 regulatory gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2695 Alide2_2696 Alide2_2696 Alide2_2696 2825746 2827503 - UvrD/REP helicase PFAM: DNA helicase%2C UvrD/REP type~KEGG: rpf:Rpic12D_4971 DNA helicase II gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2696 Alide2_2697 Alide2_2697 Alide2_2697 2827485 2829509 - ATP-dependent OLD family endonuclease KEGG: rpf:Rpic12D_4970 ATP-dependent OLD family endonuclease gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2697 Alide2_2698 Alide2_2698 Alide2_2698 2829506 2829718 - histone family protein DNA-binding protein PFAM: Histone-like bacterial DNA-binding protein~KEGG: pol:Bpro_1551 histone-like DNA-binding protein gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2698 Alide2_2699 Alide2_2699 Alide2_2699 2829795 2829968 - pseudogene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2699 Alide2_2700 Alide2_2700 Alide2_2700 2830032 2830298 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_1457 transposase IS3/IS911 family protein gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2700 Alide2_2701 Alide2_2701 Alide2_2701 2830331 2831161 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: tin:Tint_1916 integrase catalytic region gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2701 Alide2_2702 Alide2_2702 Alide2_2702 2831871 2832119 + pseudogene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2702 Alide2_2703 Alide2_2703 Alide2_2703 2832197 2832817 - Methyltransferase type 12 PFAM: Methyltransferase type 12~KEGG: pol:Bpro_4843 methyltransferase type 12 gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2703 Alide2_2704 Alide2_2704 Alide2_2704 2833454 2833543 - pseudogene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2704 Alide2_2705 Alide2_2705 Alide2_2705 2833618 2833965 - Copper binding periplasmic protein CusF PFAM: Copper binding periplasmic protein CusF~KEGG: ajs:Ajs_2667 hypothetical protein gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2705 Alide2_2706 Alide2_2706 Alide2_2706 2834045 2834536 - blue (type 1) copper domain protein PFAM: Blue (type 1) copper domain~KEGG: ajs:Ajs_2668 blue (type1) copper domain-containing protein gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2706 Alide2_2707 Alide2_2707 Alide2_2707 2834570 2835982 - multicopper oxidase type 3 PFAM: Multicopper oxidase%2C type 3%3B Multicopper oxidase%2C type 2~KEGG: ajs:Ajs_2669 multicopper oxidase%2C type 3 gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2707 Alide2_2708 Alide2_2708 Alide2_2708 2835999 2837429 - outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: ajs:Ajs_2670 putative copper resistance-related lipoprotein gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2708 Alide2_2709 Alide2_2709 Alide2_2709 2837426 2837752 - hypothetical protein KEGG: ajs:Ajs_2671 hypothetical protein gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2709 Alide2_2710 Alide2_2710 Alide2_2710 2837936 2838244 + hypothetical protein gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2710 Alide2_2711 Alide2_2711 Alide2_2711 2838501 2838809 + Flagellar hook-basal body complex protein fliE TIGRFAM: Flagellar hook-basal body complex protein FliE~HAMAP: Flagellar hook-basal body complex protein FliE~KEGG: ajs:Ajs_2673 flagellar hook-basal body complex subunit FliE~PFAM: Flagellar hook-basal body complex protein FliE gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2711 Alide2_2712 Alide2_2712 Alide2_2712 2838985 2840250 + acetate kinase TIGRFAM: Acetate kinase~KEGG: ajs:Ajs_2674 acetate kinase~PFAM: Acetate/butyrate kinase gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2712 Alide2_2713 Alide2_2713 Alide2_2713 2840464 2840916 + transcriptional regulator%2C MerR family manually curated~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~KEGG: ajs:Ajs_2675 MerR family transcriptional regulator~SMART: HTH transcriptional regulator%2C MerR gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2713 Alide2_2714 Alide2_2714 Alide2_2714 2841069 2842424 + Cyclopropane-fatty-acyl-phospholipid synthase KEGG: ajs:Ajs_2676 cyclopropane-fatty-acyl-phospholipid synthase~PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2714 Alide2_2715 Alide2_2715 Alide2_2715 2842664 2843062 + hypothetical protein KEGG: ajs:Ajs_2677 hypothetical protein gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2715 Alide2_2716 Alide2_2716 Alide2_2716 2843169 2845589 + D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase%3B Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase%2C N-terminal~KEGG: ajs:Ajs_2678 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2716 Alide2_2717 Alide2_2717 Alide2_2717 2845695 2846957 + hypothetical protein KEGG: ajs:Ajs_2679 hypothetical protein gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2717 Alide2_2718 Alide2_2718 Alide2_2718 2847023 2848066 - glyceraldehyde-3-phosphate dehydrogenase%2C type II SMART: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain~TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase%2C type II~KEGG: ajs:Ajs_2680 glyceraldehyde-3-phosphate dehydrogenase~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2718 Alide2_2719 Alide2_2719 Alide2_2719 2848094 2849713 - ABC-1 domain-containing protein PFAM: ABC-1~KEGG: ajs:Ajs_2681 2-octaprenylphenol hydroxylase gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2719 Alide2_2720 Alide2_2720 Alide2_2720 2849713 2850732 - Phosphoglycerate dehydrogenase KEGG: ajs:Ajs_2682 D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2720 Alide2_2721 Alide2_2721 Alide2_2721 2850729 2851391 - Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: ajs:Ajs_2683 methyltransferase type 11 gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2721 Alide2_2722 Alide2_2722 Alide2_2722 2851388 2852032 - hypothetical protein KEGG: ajs:Ajs_1500 hypothetical protein gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2722 Alide2_2723 Alide2_2723 Alide2_2723 2852070 2852732 - hypothetical protein KEGG: ajs:Ajs_2687 hypothetical protein gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2723 Alide2_2724 Alide2_2724 Alide2_2724 2852739 2853914 - peptidase S1 and S6 chymotrypsin/Hap KEGG: ajs:Ajs_2688 peptidase S1 and S6%2C chymotrypsin/Hap~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF~SMART: PDZ/DHR/GLGF gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2724 Alide2_2725 Alide2_2725 Alide2_2725 2853911 2854810 - ribose-phosphate pyrophosphokinase KEGG: ajs:Ajs_2689 phosphoribosylpyrophosphate synthetase~TIGRFAM: Phosphoribosyl pyrophosphokinase gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2725 Alide2_2726 Alide2_2726 Alide2_2726 2854807 2856348 - thymidine phosphorylase KEGG: ajs:Ajs_2690 thymidine phosphorylase~PFAM: Pyrimidine nucleoside phosphorylase%2C C-terminal%3B Glycosyl transferase%2C family 3~TIGRFAM: Thymidine phosphorylase%2C type 2~HAMAP: Thymidine phosphorylase%2C type 2~SMART: Pyrimidine nucleoside phosphorylase%2C C-terminal gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2726 Alide2_2727 Alide2_2727 Alide2_2727 2856345 2857703 - beta-lactamase domain protein KEGG: ajs:Ajs_2691 beta-lactamase domain-containing protein~PFAM: Beta-lactamase-like%3B RNA-metabolising metallo-beta-lactamase~SMART: Beta-lactamase-like gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2727 Alide2_2728 Alide2_2728 Alide2_2728 2857729 2858226 - protein of unknown function DUF477 PFAM: Protein of unknown function DUF477~KEGG: ajs:Ajs_2692 hypothetical protein gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2728 Alide2_2729 Alide2_2729 Alide2_2729 2858228 2859112 - protein of unknown function DUF477 PFAM: Protein of unknown function DUF477~KEGG: ajs:Ajs_2693 hypothetical protein gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2729 Alide2_2730 Alide2_2730 Alide2_2730 2859135 2859746 - LemA family protein PFAM: LemA~KEGG: ajs:Ajs_2694 LemA family protein gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2730 Alide2_2731 Alide2_2731 Alide2_2731 2859743 2861056 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: ajs:Ajs_2695 major facilitator superfamily transporter gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2731 Alide2_2732 Alide2_2732 Alide2_2732 2861076 2863523 - copper-translocating P-type ATPase TIGRFAM: ATPase%2C P type%2C cation/copper-transporter%3B ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: ajs:Ajs_2696 copper-translocating P-type ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Haloacid dehalogenase-like hydrolase gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2732 Alide2_2733 Alide2_2733 Alide2_2733 2863557 2864420 - polyphosphate kinase 2 KEGG: ajs:Ajs_2697 hypothetical protein~TIGRFAM: Polyphosphate kinase 2%2C PA0141~PFAM: Polyphosphate kinase-2-related gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2733 Alide2_2734 Alide2_2734 Alide2_2734 2864432 2864626 - hypothetical protein gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2734 Alide2_2735 Alide2_2735 Alide2_2735 2865357 2865800 + transcriptional regulator%2C MerR family manually curated~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~KEGG: ajs:Ajs_2699 MerR family transcriptional regulator~SMART: HTH transcriptional regulator%2C MerR gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2735 Alide2_2736 Alide2_2736 Alide2_2736 2866093 2866443 + hypothetical protein KEGG: ajs:Ajs_2700 hypothetical protein gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2736 Alide2_2737 Alide2_2737 Alide2_2737 2866669 2866908 + hypothetical protein KEGG: dac:Daci_0472 hypothetical protein gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2737 Alide2_2738 Alide2_2738 Alide2_2738 2867084 2868733 - hypothetical protein KEGG: ajs:Ajs_2702 hypothetical protein gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2738 Alide2_2739 Alide2_2739 Alide2_2739 2868832 2872011 - heavy metal efflux pump%2C CzcA family KEGG: ajs:Ajs_2703 CzcA family heavy metal efflux protein~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2739 Alide2_2740 Alide2_2740 Alide2_2740 2872027 2873640 - efflux transporter%2C RND family%2C MFP subunit TIGRFAM: Secretion protein HlyD~KEGG: ajs:Ajs_1482 RND family efflux transporter MFP subunit gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2740 Alide2_2741 Alide2_2741 Alide2_2741 2873637 2874911 - outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: ajs:Ajs_1481 outer membrane efflux protein gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2741 Alide2_2742 Alide2_2742 Alide2_2742 2874908 2875156 - Protein of unknown function DUF2789 PFAM: Protein of unknown function DUF2789~KEGG: ajs:Ajs_1480 hypothetical protein gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2742 Alide2_2743 Alide2_2743 Alide2_2743 2875214 2876494 - membrane protein-like protein KEGG: ajs:Ajs_1479 membrane protein-like protein gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2743 Alide2_2744 Alide2_2744 Alide2_2744 2876491 2876646 - hypothetical protein KEGG: dia:Dtpsy_2188 hypothetical protein gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2744 Alide2_2745 Alide2_2745 Alide2_2745 2876953 2877999 - 40-residue YVTN family beta-propeller repeat protein TIGRFAM: YVTN beta-propeller repeat~KEGG: ajs:Ajs_1471 YVTN beta-propeller repeat-containing protein gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2745 Alide2_2746 Alide2_2746 Alide2_2746 2878104 2879942 - hypothetical protein KEGG: ajs:Ajs_1470 hypothetical protein gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2746 Alide2_2747 Alide2_2747 Alide2_2747 2879963 2882296 - heavy metal translocating P-type ATPase SMART: TRASH~TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P type%2C cation/copper-transporter%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: lbf:LBF_0420 cation transport ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B YHS%3B Haloacid dehalogenase-like hydrolase gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2747 Alide2_2748 Alide2_2748 Alide2_2748 2882300 2882551 - hypothetical protein KEGG: lbf:LBF_0421 hypothetical protein gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2748 Alide2_2749 Alide2_2749 Alide2_2749 2882636 2882929 - Heavy metal transport/detoxification protein KEGG: ajs:Ajs_1467 heavy metal transport/detoxification protein~manually curated~PFAM: Heavy metal transport/detoxification protein gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2749 Alide2_2750 Alide2_2750 Alide2_2750 2882980 2883648 - Isoprenylcysteine carboxyl methyltransferase PFAM: Isoprenylcysteine carboxyl methyltransferase~KEGG: ajs:Ajs_1466 isoprenylcysteine carboxyl methyltransferase gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2750 Alide2_2751 Alide2_2751 Alide2_2751 2883645 2883929 - Protein of unknown function DUF2933 KEGG: ajs:Ajs_1465 hypothetical protein~manually curated~PFAM: Protein of unknown function DUF2933 gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2751 Alide2_2752 Alide2_2752 Alide2_2752 2883955 2884428 - hypothetical protein KEGG: ajs:Ajs_1464 hypothetical protein gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2752 Alide2_2753 Alide2_2753 Alide2_2753 2884518 2884862 - hypothetical protein KEGG: ajs:Ajs_1463 hypothetical protein gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2753 Alide2_2754 Alide2_2754 Alide2_2754 2885099 2885764 + two component heavy metal response transcriptional regulator%2C winged helix family TIGRFAM: Signal transduction response regulator%2C heavy metal response~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~KEGG: ajs:Ajs_1461 two component heavy metal response transcriptional regulator~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2754 Alide2_2755 Alide2_2755 Alide2_2755 2885761 2886675 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2755 Alide2_2756 Alide2_2756 Alide2_2756 2886672 2886995 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2756 Alide2_2757 Alide2_2757 Alide2_2757 2887180 2887626 - pseudogene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2757 Alide2_2758 Alide2_2758 Alide2_2758 2887631 2888161 - hypothetical protein KEGG: dat:HRM2_14600 hypothetical protein gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2758 Alide2_2759 Alide2_2759 Alide2_2759 2888161 2888550 - Domain of unknown function DUF1863 PFAM: MTH538 TIR-like domain~KEGG: hdn:Hden_3446 hypothetical protein gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2759 Alide2_2760 Alide2_2760 Alide2_2760 2889271 2890920 - hypothetical protein gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2760 Alide2_2761 Alide2_2761 Alide2_2761 2891349 2891789 - thioesterase superfamily protein KEGG: vap:Vapar_2079 hypothetical protein~manually curated~PFAM: Thioesterase superfamily gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2761 Alide2_2762 Alide2_2762 Alide2_2762 2891903 2892451 - hypothetical protein manually curated~KEGG: ajs:Ajs_1603 hypothetical protein gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2762 Alide2_2763 Alide2_2763 Alide2_2763 2892448 2892894 - hypothetical protein manually curated~KEGG: ajs:Ajs_1602 hypothetical protein gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2763 Alide2_2764 Alide2_2764 Alide2_2764 2892902 2893177 - hypothetical protein KEGG: ajs:Ajs_1601 hypothetical protein gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2764 Alide2_2765 Alide2_2765 Alide2_2765 2893174 2894205 - PRTRC system protein D TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein D~KEGG: ajs:Ajs_1600 hypothetical protein gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2765 Alide2_2766 Alide2_2766 Alide2_2766 2895406 2896545 + hypothetical protein manually curated~KEGG: ajs:Ajs_1599 hypothetical protein gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2766 Alide2_2767 Alide2_2767 Alide2_2767 2896556 2896885 - histone family protein nucleoid-structuring protein H-NS KEGG: ajs:Ajs_1598 nucleoid protein H-NS~PFAM: Histone-like nucleoid-structuring protein H-NS~SMART: Histone-like nucleoid-structuring protein H-NS gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2767 Alide2_2768 Alide2_2768 Alide2_2768 2897014 2897223 - hypothetical protein gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2768 Alide2_2769 Alide2_2769 Alide2_2769 2897220 2898067 - pseudogene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2769 Alide2_2770 Alide2_2770 Alide2_2770 2898121 2898831 - PRTRC system protein A KEGG: ajs:Ajs_1596 hypothetical protein~TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein A~PFAM: Domain of unknown function DUF2016 gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2770 Alide2_2771 Alide2_2771 Alide2_2771 2898828 2899568 - PRTRC system protein B TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein B~KEGG: ajs:Ajs_1595 hypothetical protein gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2771 Alide2_2772 Alide2_2772 Alide2_2772 2899588 2902137 - pseudogene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2772 Alide2_2773 Alide2_2773 Alide2_2773 2899937 2901067 + putative transposase KEGG: pol:Bpro_2745 putative transposase gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2773 Alide2_2774 Alide2_2774 Alide2_2774 2901033 2901326 + hypothetical protein KEGG: pol:Bpro_2744 hypothetical protein gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2774 Alide2_2775 Alide2_2775 Alide2_2775 2902134 2902592 - ParB-related%2CThiF-related cassette%2C protein C TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein C~KEGG: ajs:Ajs_1593 hypothetical protein gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2775 Alide2_2776 Alide2_2776 Alide2_2776 2902689 2903165 - PRTRC system protein E TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein E~KEGG: ajs:Ajs_1592 hypothetical protein gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2776 Alide2_2777 Alide2_2777 Alide2_2777 2903263 2905056 - PRTRC system ParB family protein TIGRFAM: ParB-related%2C ThiF-related cassette%2C ParB%3B ParB-like partition protein~PFAM: ParB-like nuclease~KEGG: ajs:Ajs_1591 ParB family protein~SMART: ParB-like nuclease gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2777 Alide2_2778 Alide2_2778 Alide2_2778 2905790 2908777 + N-6 DNA methylase PFAM: DNA methylase%2C adenine-specific~KEGG: hch:HCH_07036 type I restriction-modification system methyltransferase subunit gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2778 Alide2_2779 Alide2_2779 Alide2_2779 2908790 2909497 + hypothetical protein KEGG: hch:HCH_07035 hypothetical protein gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2779 Alide2_2780 Alide2_2780 Alide2_2780 2909821 2912418 + DEAD/DEAH box helicase domain protein KEGG: seh:SeHA_C1592 helicase C2~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C ATP-dependent%2C c2 type gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2780 Alide2_2781 Alide2_2781 Alide2_2781 2913168 2914683 - pseudogene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2781 Alide2_2782 Alide2_2782 Alide2_2782 2914766 2915098 - IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2-like~KEGG: rfr:Rfer_2710 IS66 Orf2 like gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2782 Alide2_2783 Alide2_2783 Alide2_2783 2915095 2915523 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: rfr:Rfer_2709 transposase IS3/IS911 gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2783 Alide2_2784 Alide2_2784 Alide2_2784 2915578 2916102 - hypothetical protein KEGG: ajs:Ajs_1561 hypothetical protein gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2784 Alide2_2785 Alide2_2785 Alide2_2785 2916597 2917199 + hypothetical protein KEGG: ajs:Ajs_1560 hypothetical protein gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2785 Alide2_2786 Alide2_2786 Alide2_2786 2917270 2917518 + hypothetical protein KEGG: ajs:Ajs_1559 hypothetical protein gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2786 Alide2_2787 Alide2_2787 Alide2_2787 2917530 2918108 + hypothetical protein KEGG: ajs:Ajs_1558 hypothetical protein gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2787 Alide2_2788 Alide2_2788 Alide2_2788 2918095 2919099 + P4 alpha zinc-binding domain protein KEGG: ajs:Ajs_1556 phage P4 alpha zinc-binding domain-containing protein~PFAM: Phage P4 alpha%2C zinc-binding~SMART: Phage P4 alpha%2C zinc-binding gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2788 Alide2_2789 Alide2_2789 Alide2_2789 2919361 2920425 + hypothetical protein KEGG: ajs:Ajs_1554 hypothetical protein gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2789 Alide2_2790 Alide2_2790 Alide2_2790 2920494 2921060 - putative phage repressor PFAM: Peptidase S24/S26A/S26B%2C conserved region~KEGG: ajs:Ajs_1553 putative phage repressor gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2790 Alide2_2791 Alide2_2791 Alide2_2791 2921492 2921806 + hypothetical protein KEGG: ajs:Ajs_1552 hypothetical protein gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2791 Alide2_2792 Alide2_2792 Alide2_2792 2921807 2922457 + hypothetical protein KEGG: ajs:Ajs_1551 hypothetical protein gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2792 Alide2_2793 Alide2_2793 Alide2_2793 2922511 2924274 + Relaxase PFAM: Uncharacterised protein family%2C helicase/relaxase%2C putative~KEGG: ajs:Ajs_1550 FHA domain-containing protein gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2793 Alide2_2794 Alide2_2794 Alide2_2794 2924276 2926183 + conjugative coupling factor TraD%2C SXT/TOL subfamily TIGRFAM: Conjugative coupling factor TraG/TraD~KEGG: ajs:Ajs_1549 hypothetical protein gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2794 Alide2_2795 Alide2_2795 Alide2_2795 2926180 2926803 + hypothetical protein KEGG: ajs:Ajs_1548 hypothetical protein gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2795 Alide2_2796 Alide2_2796 Alide2_2796 2926818 2927063 - helix-turn-helix domain protein manually curated~PFAM: Helix-turn-helix type 3~KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein~SMART: Helix-turn-helix type 3 gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2796 Alide2_2797 Alide2_2797 Alide2_2797 2927186 2927494 + hypothetical protein KEGG: ajs:Ajs_1546 hypothetical protein gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2797 Alide2_2798 Alide2_2798 Alide2_2798 2927647 2928186 + hypothetical protein KEGG: ajs:Ajs_1545 hypothetical protein gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2798 Alide2_2799 Alide2_2799 Alide2_2799 2928361 2928897 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: ajs:Ajs_1544 lytic transglycosylase%2C catalytic gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2799 Alide2_2800 Alide2_2800 Alide2_2800 2928894 2929598 + OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: dar:Daro_2312 OmpA/MotB gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2800 Alide2_2801 Alide2_2801 Alide2_2801 2929713 2930075 + hypothetical protein KEGG: ajs:Ajs_1542 hypothetical protein gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2801 Alide2_2802 Alide2_2802 Alide2_2802 2930107 2930406 + type IV conjugative transfer system protein TraL KEGG: ajs:Ajs_1541 TraL family protein~TIGRFAM: Type IV conjugative transfer system%2C protein TraL~PFAM: Type IV conjugative transfer system%2C protein TraL gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2802 Alide2_2803 Alide2_2803 Alide2_2803 2930421 2930987 + type IV conjugative transfer system protein TraE TIGRFAM: Pilus assembly TraE~KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2803 Alide2_2804 Alide2_2804 Alide2_2804 2930974 2931966 + hypothetical protein KEGG: ajs:Ajs_1539 hypothetical protein gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2804 Alide2_2805 Alide2_2805 Alide2_2805 2931963 2933369 + TraB pilus assembly family protein KEGG: ajs:Ajs_1538 TraB pilus assembly family protein gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2805 Alide2_2806 Alide2_2806 Alide2_2806 2933353 2934198 + disulfide bond isomerase%2C DsbC/G PFAM: Disulphide bond isomerase%2C DsbC/G%2C N-terminal~KEGG: ajs:Ajs_1537 periplasmic thiol:disulfide interchange protein gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2806 Alide2_2807 Alide2_2807 Alide2_2807 2934195 2934839 + type IV conjugative transfer system protein TraV KEGG: ajs:Ajs_1536 hypothetical protein~TIGRFAM: Type IV secretion system%2C TraV~PFAM: Type IV secretion system%2C TraV gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2807 Alide2_2808 Alide2_2808 Alide2_2808 2934847 2937429 + type-IV secretion system protein TraC TIGRFAM: Type-IV secretion system protein TraC~KEGG: ajs:Ajs_1535 hypothetical protein gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2808 Alide2_2809 Alide2_2809 Alide2_2809 2937426 2937785 + hypothetical protein KEGG: ajs:Ajs_1534 hypothetical protein gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2809 Alide2_2810 Alide2_2810 Alide2_2810 2937782 2938369 + conjugative transfer signal peptidase TraF KEGG: ajs:Ajs_1533 hypothetical protein~TIGRFAM: Peptidase S26C%2C conjugative transfer signal peptidase TraF~PFAM: Peptidase S26%2C conserved region gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2810 Alide2_2811 Alide2_2811 Alide2_2811 2938381 2938788 + hypothetical protein KEGG: ajs:Ajs_1532 hypothetical protein gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2811 Alide2_2812 Alide2_2812 Alide2_2812 2938785 2939414 + type-F conjugative transfer system protein TraW TIGRFAM: Type-F conjugative transfer system protein TraW~KEGG: ajs:Ajs_1531 membrane lipoprotein lipid attachment site gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2812 Alide2_2813 Alide2_2813 Alide2_2813 2939411 2940430 + TraU family protein PFAM: TraU~KEGG: ajs:Ajs_1530 TraU family protein gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2813 Alide2_2814 Alide2_2814 Alide2_2814 2940417 2941169 + type-F conjugative transfer system pilin assembly protein TrbC KEGG: ajs:Ajs_1529 hypothetical protein~TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC%2C subgroup~PFAM: Type-F conjugative transfer system pilin assembly protein TrbC gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2814 Alide2_2815 Alide2_2815 Alide2_2815 2941179 2943596 + conjugal transfer mating pair stabilization protein TraN KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2815 Alide2_2816 Alide2_2816 Alide2_2816 2943593 2943988 + hypothetical protein KEGG: ajs:Ajs_1527 hypothetical protein gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2816 Alide2_2817 Alide2_2817 Alide2_2817 2943996 2944874 + TraF-like protein TIGRFAM: Type IV conjugative transfer system protein TraF~KEGG: ajs:Ajs_1526 hypothetical protein gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2817 Alide2_2818 Alide2_2818 Alide2_2818 2944884 2946332 + TraH family protein PFAM: Type IV conjugative transfer system protein TraH~KEGG: ajs:Ajs_1525 TraH family protein gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2818 Alide2_2819 Alide2_2819 Alide2_2819 2946354 2949128 + TraG domain-containing protein PFAM: TraG-like%2C N-terminal~KEGG: ajs:Ajs_1524 TraG domain-containing protein gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2819 Alide2_2820 Alide2_2820 Alide2_2820 2949134 2949469 - hypothetical protein KEGG: ajs:Ajs_1521 hypothetical protein gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2820 Alide2_2821 Alide2_2821 Alide2_2821 2949955 2951064 + hypothetical protein gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2821 Alide2_2822 Alide2_2822 Alide2_2822 2951033 2951890 + Trypsin PFAM: Peptidase S1/S6%2C chymotrypsin/Hap~KEGG: mmu:16621 kallikrein B%2C plasma 1~SMART: Peptidase S1/S6%2C chymotrypsin/Hap gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2822 Alide2_2823 Alide2_2823 Alide2_2823 2952262 2952687 - transcriptional regulator%2C MerR family KEGG: dia:Dtpsy_1455 transcriptional regulator%2C MerR family~PFAM: HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2823 Alide2_2824 Alide2_2824 Alide2_2824 2952787 2953140 - integration host factor%2C alpha subunit TIGRFAM: Integration host factor%2C alpha subunit~PFAM: Histone-like bacterial DNA-binding protein~KEGG: dia:Dtpsy_1454 integration host factor subunit alpha~SMART: Histone-like bacterial DNA-binding protein gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2824 Alide2_2825 Alide2_2825 Alide2_2825 2953137 2955581 - Phenylalanyl-tRNA synthetase beta chain TIGRFAM: Phenylalanyl-tRNA synthetase%2C class IIc%2C beta subunit%2C bacterial~KEGG: ajs:Ajs_2395 phenylalanyl-tRNA synthetase subunit beta~HAMAP: Phenylalanyl-tRNA synthetase%2C class IIc%2C beta subunit%2C bacterial gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2825 Alide2_2826 Alide2_2826 Alide2_2826 2955705 2956757 - phenylalanyl-tRNA synthetase%2C alpha subunit KEGG: dia:Dtpsy_1452 phenylalanyl-tRNA synthetase subunit alpha~TIGRFAM: Phenylalanyl-tRNA synthetase%2C class IIc%2C alpha subunit~PFAM: Phenylalanyl-tRNA synthetase%3B Phenylalanyl-tRNA synthetase%2C class II%2C N-terminal gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2826 Alide2_2827 Alide2_2827 Alide2_2827 2956859 2957218 - 50S ribosomal protein L20 TIGRFAM: Ribosomal protein L20~HAMAP: Ribosomal protein L20~KEGG: ajs:Ajs_2397 50S ribosomal protein L20~PFAM: Ribosomal protein L20 gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2827 Alide2_2828 Alide2_2828 Alide2_2828 2957245 2957448 - ribosomal protein L35 KEGG: aav:Aave_2857 50S ribosomal protein L35~TIGRFAM: Ribosomal protein L35%2C non-mitochondrial~PFAM: Ribosomal protein L35 gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2828 Alide2_2829 Alide2_2829 Alide2_2829 2957624 2958223 - Translation initiation factor IF-3 PFAM: Translation initiation factor 3%2C C-terminal%3B Translation initiation factor 3%2C N-terminal~manually curated~TIGRFAM: Translation initiation factor 3~KEGG: ajs:Ajs_2399 translation initiation factor 3~HAMAP: Translation initiation factor 3 gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2829 Alide2_2830 Alide2_2830 Alide2_2830 2958302 2960221 - threonyl-tRNA synthetase TIGRFAM: Threonyl-tRNA synthetase%2C class IIa~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain%3B Threonyl/alanyl tRNA synthetase%2C SAD%3B TGS%3B Anticodon-binding~KEGG: ajs:Ajs_2400 threonyl-tRNA synthetase~SMART: Threonyl/alanyl tRNA synthetase%2C SAD gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2830 Alide2_2831 Alide2_2831 Alide2_2831 2960580 2961491 - GreA/GreB family elongation factor PFAM: GCN5-related N-acetyltransferase (GNAT) domain~KEGG: bbr:BB4124 putative enzyme-regulator fusion protein gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2831 Alide2_2832 Alide2_2832 Alide2_2832 2961912 2963243 - isocitrate lyase TIGRFAM: Isocitrate lyase~KEGG: dia:Dtpsy_1447 isocitrate lyase~PFAM: Isocitrate lyase/phosphorylmutase gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2832 Alide2_2833 Alide2_2833 Alide2_2833 2963509 2964528 + protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: ajs:Ajs_2402 hypothetical protein gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2833 Alide2_2834 Alide2_2834 Alide2_2834 2964685 2964966 + SWIB/MDM2 domain-containing protein KEGG: dia:Dtpsy_1444 SWIB/MDM2 domain protein~PFAM: SWIB/MDM2 domain~SMART: SWIB domain gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2834 Alide2_2835 Alide2_2835 Alide2_2835 2965161 2965433 + BFD domain protein (2Fe-2S)-binding domain protein KEGG: dia:Dtpsy_1443 BFD domain protein (2Fe-2S)-binding domain protein~manually curated~PFAM: BFD-like [2Fe-2S]-binding domain gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2835 Alide2_2836 Alide2_2836 Alide2_2836 2965589 2966251 + TonB family protein KEGG: dia:Dtpsy_1442 TonB family protein~TIGRFAM: TonB%2C C-terminal~PFAM: TonB%2C C-terminal gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2836 Alide2_2837 Alide2_2837 Alide2_2837 2966267 2966986 + MotA/TolQ/ExbB proton channel PFAM: MotA/TolQ/ExbB proton channel~KEGG: dia:Dtpsy_1441 MotA/TolQ/ExbB proton channel gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2837 Alide2_2838 Alide2_2838 Alide2_2838 2966993 2967403 + Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR~KEGG: ajs:Ajs_2408 biopolymer transport protein ExbD/TolR gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2838 Alide2_2839 Alide2_2839 Alide2_2839 2967499 2967726 + Hemin uptake protein hemP PFAM: Hemin uptake protein HemP~KEGG: ajs:Ajs_2409 hypothetical protein gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2839 Alide2_2840 Alide2_2840 Alide2_2840 2967954 2968361 - protein of unknown function DUF336 PFAM: Domain of unknown function DUF336~KEGG: dia:Dtpsy_1438 protein of unknown function DUF336 gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2840 Alide2_2841 Alide2_2841 Alide2_2841 2968580 2969269 + protein of unknown function UPF0005 PFAM: Inhibitor of apoptosis-promoting Bax1-related~KEGG: dia:Dtpsy_1437 protein of unknown function UPF0005 gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2841 Alide2_2842 Alide2_2842 Alide2_2842 2969388 2969891 + regulatory protein MarR KEGG: rme:Rmet_3623 MarR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2842 Alide2_2843 Alide2_2843 Alide2_2843 2969888 2971321 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: reu:Reut_B5563 major facilitator transporter gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2843 Alide2_2844 Alide2_2844 Alide2_2844 2971375 2971758 + hypothetical protein KEGG: ajs:Ajs_2412 hypothetical protein gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2844 Alide2_2845 Alide2_2845 Alide2_2845 2971791 2972123 - small multidrug resistance protein PFAM: Small multidrug resistance protein~KEGG: dia:Dtpsy_1617 small multidrug resistance protein gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2845 Alide2_2846 Alide2_2846 Alide2_2846 2972338 2972928 + Chromate transporter PFAM: Chromate transporter~KEGG: dia:Dtpsy_1615 chromate transporter gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2846 Alide2_2847 Alide2_2847 Alide2_2847 2972931 2973524 + Chromate transporter PFAM: Chromate transporter~KEGG: dia:Dtpsy_1614 chromate transporter gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2847 Alide2_2848 Alide2_2848 Alide2_2848 2973546 2974373 - NAD-dependent deacetylase KEGG: dia:Dtpsy_1612 silent information regulator protein Sir2~HAMAP: NAD-dependent histone deacetylase%2C silent information regulator Sir2~PFAM: NAD-dependent histone deacetylase%2C silent information regulator Sir2 gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2848 Alide2_2849 Alide2_2849 Alide2_2849 2974395 2975060 - regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: dia:Dtpsy_1611 regulatory protein TetR gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2849 Alide2_2850 Alide2_2850 Alide2_2850 2975144 2975497 + protein of unknown function DUF1428 PFAM: Protein of unknown function DUF1428~KEGG: dia:Dtpsy_1610 protein of unknown function DUF1428 gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2850 Alide2_2851 Alide2_2851 Alide2_2851 2975542 2975889 + glutathione-dependent formaldehyde-activating GFA PFAM: Glutathione-dependent formaldehyde-activating%2C GFA~KEGG: pol:Bpro_2417 glutathione-dependent formaldehyde-activating%2C GFA gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2851 Alide2_2852 Alide2_2852 Alide2_2852 2975983 2976435 + 3-demethylubiquinone-9 3-methyltransferase KEGG: ajs:Ajs_2265 3-demethylubiquinone-9 3-methyltransferase gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2852 Alide2_2853 Alide2_2853 Alide2_2853 2976468 2976914 + Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase homologue 1-like~KEGG: dia:Dtpsy_1608 activator of HSP90 ATPase 1 family protein gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2853 Alide2_2854 Alide2_2854 Alide2_2854 2976950 2977435 + 3-demethylubiquinone-9 3-methyltransferase KEGG: gur:Gura_0848 3-demethylubiquinone-9 3-methyltransferase gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2854 Alide2_2855 Alide2_2855 Alide2_2855 2977558 2977941 + hypothetical protein KEGG: dac:Daci_4029 hypothetical protein gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2855 Alide2_2856 Alide2_2856 Alide2_2856 2977948 2978406 + Activator of Hsp90 ATPase 1 family protein PFAM: Activator of Hsp90 ATPase homologue 1-like~KEGG: dar:Daro_2725 hypothetical protein gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2856 Alide2_2857 Alide2_2857 Alide2_2857 2978413 2979159 - RNA methyltransferase%2C TrmH family%2C group 3 TIGRFAM: RNA methyltransferase TrmH%2C group 3~PFAM: tRNA/rRNA methyltransferase%2C SpoU%3B RNA 2-O ribose methyltransferase%2C substrate binding~KEGG: dia:Dtpsy_1606 RNA methyltransferase%2C TrmH family%2C group 3~SMART: RNA 2-O ribose methyltransferase%2C substrate binding gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2857 Alide2_2858 Alide2_2858 Alide2_2858 2979302 2980513 + Serine/threonine transporter sstT KEGG: dia:Dtpsy_1605 serine/threonine transporter SstT~HAMAP: Serine/threonine transporter SstT~PFAM: Sodium:dicarboxylate symporter gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2858 Alide2_2859 Alide2_2859 Alide2_2859 2980547 2981269 - Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_1604 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2859 Alide2_2860 Alide2_2860 Alide2_2860 2981294 2981941 + Arylesterase KEGG: dia:Dtpsy_1603 lipolytic protein G-D-S-L family~PFAM: Lipase%2C GDSL gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2860 Alide2_2861 Alide2_2861 Alide2_2861 2981955 2982785 - Protein of unknown function DUF2189%2C transmembrane PFAM: Protein of unknown function DUF2189%2C transmembrane~KEGG: dia:Dtpsy_1602 integral membrane protein gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2861 Alide2_2862 Alide2_2862 Alide2_2862 2982898 2984127 - Cystathionine beta-lyase KEGG: dia:Dtpsy_1601 Cys/Met metabolism pyridoxal-phosphate-dependent protein~PFAM: Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2862 Alide2_2863 Alide2_2863 Alide2_2863 2984148 2984603 - transport-associated protein KEGG: dia:Dtpsy_1600 transport-associated~PFAM: Transport-associated~SMART: Transport-associated and nodulation domain%2C bacteria gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2863 Alide2_2864 Alide2_2864 Alide2_2864 2984730 2986415 + sulphate transporter PFAM: Sulphate transporter%3B Sulphate transporter/antisigma-factor antagonist STAS~KEGG: ajs:Ajs_2275 sulphate transporter gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2864 Alide2_2865 Alide2_2865 Alide2_2865 2986452 2987225 + diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted~KEGG: dia:Dtpsy_1598 diguanylate cyclase~SMART: Diguanylate cyclase%2C predicted gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2865 Alide2_2866 Alide2_2866 Alide2_2866 2987236 2988105 + Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: dia:Dtpsy_1597 cobyrinic acid ac-diamide synthase gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2866 Alide2_2867 Alide2_2867 Alide2_2867 2988176 2990080 - propionate/CoA ligase TIGRFAM: Propionate--CoA ligase~KEGG: dia:Dtpsy_1825 propionyl-CoA synthetase~PFAM: AMP-dependent synthetase/ligase gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2867 Alide2_2868 Alide2_2868 Alide2_2868 2990201 2990809 - isochorismatase hydrolase PFAM: Isochorismatase-like~KEGG: dia:Dtpsy_1824 isochorismatase hydrolase gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2868 Alide2_2869 Alide2_2869 Alide2_2869 2990873 2991976 - glucose sorbosone dehydrogenase KEGG: dia:Dtpsy_1823 glucose sorbosone dehydrogenase gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2869 Alide2_2870 Alide2_2870 Alide2_2870 2992122 2993036 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_1814 transcriptional regulator%2C LysR family gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2870 Alide2_2871 Alide2_2871 Alide2_2871 2993167 2994684 + methylmalonate-semialdehyde dehydrogenase TIGRFAM: Methylmalonate-semialdehyde dehydrogenase~KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase [acylating]~PFAM: Aldehyde dehydrogenase domain gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2871 Alide2_2872 Alide2_2872 Alide2_2872 2994681 2995079 + protein of unknown function DUF1311 PFAM: Protein of unknown function DUF1311~KEGG: ajs:Ajs_2008 hypothetical protein gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2872 Alide2_2873 Alide2_2873 Alide2_2873 2995105 2996271 + Butyryl-CoA dehydrogenase KEGG: ajs:Ajs_2007 acyl-CoA dehydrogenase domain-containing protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2873 Alide2_2874 Alide2_2874 Alide2_2874 2996339 2996725 + TfoX domain-containing protein PFAM: TfoX%2C N-terminal~KEGG: dia:Dtpsy_1810 hypothetical protein gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2874 Alide2_2875 Alide2_2875 Alide2_2875 2996756 2997652 + 3-hydroxyisobutyrate dehydrogenase TIGRFAM: 3-hydroxyisobutyrate dehydrogenase~KEGG: dia:Dtpsy_1809 3-hydroxyisobutyrate dehydrogenase~PFAM: 6-phosphogluconate dehydrogenase%2C NAD-binding gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2875 Alide2_2876 Alide2_2876 Alide2_2876 2997815 2998648 + methyltransferase FkbM family TIGRFAM: Methyltransferase FkbM~KEGG: ter:Tery_1754 FkbM family methyltransferase gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2876 Alide2_2877 Alide2_2877 Alide2_2877 2998918 2999088 + hypothetical protein manually curated~KEGG: har:HEAR0421 hypothetical protein gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2877 Alide2_2878 Alide2_2878 Alide2_2878 2999146 2999535 - hypothetical protein KEGG: dia:Dtpsy_1801 hypothetical protein gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2878 Alide2_2879 Alide2_2879 Alide2_2879 2999673 3000881 + tryptophan synthase%2C beta subunit TIGRFAM: Tryptophan synthase%2C beta chain~KEGG: dia:Dtpsy_1800 tryptophan synthase subunit beta~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2879 Alide2_2880 Alide2_2880 Alide2_2880 3000909 3001247 + protein of unknown function DUF469 PFAM: Protein of unknown function DUF469~KEGG: dia:Dtpsy_1799 protein of unknown function DUF469 gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2880 Alide2_2881 Alide2_2881 Alide2_2881 3001324 3002904 - galactarate dehydratase SMART: SAF domain~TIGRFAM: Galactarate dehydratase~KEGG: ajs:Ajs_1998 galactarate dehydratase~PFAM: D-galactarate dehydratase/Altronate hydrolase%2C C-terminal%3B SAF domain gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2881 Alide2_2882 Alide2_2882 Alide2_2882 3002945 3003943 - hypothetical protein KEGG: ajs:Ajs_1997 hypothetical protein gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2882 Alide2_2883 Alide2_2883 Alide2_2883 3003968 3005263 - Glucarate dehydratase PFAM: Mandelate racemase/muconate lactonizing enzyme%2C C-terminal%3B Mandelate racemase/muconate lactonizing enzyme%2C N-terminal~KEGG: ctt:CtCNB1_0239 mandelate racemase/muconate lactonizing~SMART: Mandelate racemase/muconate lactonizing enzyme%2C C-terminal gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2883 Alide2_2884 Alide2_2884 Alide2_2884 3005269 3006102 + GntR domain protein KEGG: ctt:CtCNB1_0240 GntR-like protein~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2884 Alide2_2885 Alide2_2885 Alide2_2885 3006195 3007181 + hypothetical protein KEGG: dia:Dtpsy_1794 hypothetical protein gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2885 Alide2_2886 Alide2_2886 Alide2_2886 3007253 3008164 + 5-dehydro-4-deoxyglucarate dehydratase PFAM: Dihydrodipicolinate synthetase~TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase~HAMAP: 5-dehydro-4-deoxyglucarate dehydratase~KEGG: dia:Dtpsy_1793 5-dehydro-4-deoxyglucarate dehydratase gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2886 Alide2_2887 Alide2_2887 Alide2_2887 3008238 3009191 + hypothetical protein KEGG: ajs:Ajs_1992 hypothetical protein gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2887 Alide2_2888 Alide2_2888 Alide2_2888 3009203 3010195 + Glyoxylate reductase KEGG: ajs:Ajs_1991 D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2888 Alide2_2889 Alide2_2889 Alide2_2889 3010227 3011564 + Glucarate dehydratase PFAM: Mandelate racemase/muconate lactonizing enzyme%2C C-terminal%3B Mandelate racemase/muconate lactonizing enzyme%2C N-terminal~KEGG: dia:Dtpsy_1790 glucarate dehydratase~SMART: Mandelate racemase/muconate lactonizing enzyme%2C C-terminal gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2889 Alide2_2890 Alide2_2890 Alide2_2890 3011636 3013084 + Aldehyde Dehydrogenase PFAM: Aldehyde dehydrogenase domain~KEGG: ctt:CtCNB1_0246 aldehyde dehydrogenase gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2890 Alide2_2891 Alide2_2891 Alide2_2891 3013154 3013906 + Leucyl/phenylalanyl-tRNA--protein transferase PFAM: Leucyl/phenylalanyl-tRNA-protein transferase~TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase~HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase~KEGG: dia:Dtpsy_1788 leucyl/phenylalanyl-tRNA--protein transferase gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2891 Alide2_2892 Alide2_2892 Alide2_2892 3013903 3014646 + arginyl-tRNA--protein transferase KEGG: dia:Dtpsy_1787 arginyl-tRNA-protein transferase~HAMAP: Arginine-tRNA-protein transferase%2C predicted%2C prokaryotic~PFAM: Arginine-tRNA-protein transferase%2C C-terminal%3B Arginine-tRNA-protein transferase%2C N-terminal gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2892 Alide2_2893 Alide2_2893 Alide2_2893 3014719 3015420 - Pirin domain protein PFAM: Pirin%2C N-terminal~KEGG: ajs:Ajs_1985 pirin domain-containing protein gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2893 Alide2_2894 Alide2_2894 Alide2_2894 3015532 3016467 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_1784 transcriptional regulator%2C LysR family gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2894 Alide2_2895 Alide2_2895 Alide2_2895 3016542 3017636 + amine oxidase PFAM: Amine oxidase~KEGG: ajs:Ajs_1983 FAD dependent oxidoreductase gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2895 Alide2_2896 Alide2_2896 Alide2_2896 3017633 3018598 + Glutamyl-Q tRNA(Asp) synthetase PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain~TIGRFAM: Glutamyl-Q tRNA(Asp) synthetase~HAMAP: Glutamyl-Q tRNA(Asp) synthetase~KEGG: ajs:Ajs_1982 glutamate--tRNA ligase gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2896 Alide2_2897 Alide2_2897 Alide2_2897 3018556 3019329 + tRNA (guanine-N(7)-)-methyltransferase TIGRFAM: tRNA (guanine-N-7) methyltransferase~HAMAP: tRNA (guanine-N-7) methyltransferase~KEGG: dia:Dtpsy_1781 tRNA (guanine-N(7)-)-methyltransferase~PFAM: tRNA (guanine-N-7) methyltransferase gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2897 Alide2_2898 Alide2_2898 Alide2_2898 3019358 3020362 + diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted~KEGG: dia:Dtpsy_1780 diguanylate cyclase~SMART: Diguanylate cyclase%2C predicted gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2898 Alide2_2899 Alide2_2899 Alide2_2899 3020413 3023034 - alanyl-tRNA synthetase TIGRFAM: Alanyl-tRNA synthetase%2C class IIc~PFAM: Alanyl-tRNA synthetase%2C class IIc%2C N-terminal%3B Threonyl/alanyl tRNA synthetase%2C SAD%3B Phosphoesterase%2C DHHA1~KEGG: dia:Dtpsy_1779 alanyl-tRNA synthetase~SMART: Threonyl/alanyl tRNA synthetase%2C SAD gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2899 Alide2_2900 Alide2_2900 Alide2_2900 3023254 3024168 + Dihydrodipicolinate synthase KEGG: vap:Vapar_5222 dihydrodipicolinate synthetase~PFAM: Dihydrodipicolinate synthetase gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2900 Alide2_2901 Alide2_2901 Alide2_2901 3024189 3024824 + Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter%2C DctQ component~KEGG: ctt:CtCNB1_4596 tripartite ATP-independent periplasmic gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2901 Alide2_2902 Alide2_2902 Alide2_2902 3024842 3026107 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: ctt:CtCNB1_4595 TRAP dicarboxylate transporter%2C DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2902 Alide2_2903 Alide2_2903 Alide2_2903 3026133 3027119 + Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: ctt:CtCNB1_4594 TRAP dicarboxylate transporter%2C DctP subunit gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2903 Alide2_2904 Alide2_2904 Alide2_2904 3027178 3028212 + Malate dehydrogenase KEGG: bpd:BURPS668_A0565 malate/L-lactate dehydrogenase family protein~PFAM: Malate/L-lactate dehydrogenase gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2904 Alide2_2905 Alide2_2905 Alide2_2905 3028287 3028961 + transcriptional regulator%2C GntR family KEGG: vap:Vapar_5216 transcriptional regulator%2C GntR family~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR%3B GntR%2C C-terminal gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2905 Alide2_2906 Alide2_2906 Alide2_2906 3028985 3029935 + pseudouridine synthase PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~KEGG: dia:Dtpsy_1777 pseudouridine synthase gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2906 Alide2_2907 Alide2_2907 Alide2_2907 3029910 3032615 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase (GNAT) domain~KEGG: dia:Dtpsy_1832 GCN5-related N-acetyltransferase gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2907 Alide2_2908 Alide2_2908 Alide2_2908 3032662 3034005 - Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein PFAM: Three-deoxy-D-manno-octulosonic-acid transferase%2C N-terminal~KEGG: dia:Dtpsy_1831 3-deoxy-D-manno-octulosonic-acid transferase domain protein gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2908 Alide2_2909 Alide2_2909 Alide2_2909 3034026 3035414 - Phosphoglucomutase KEGG: dia:Dtpsy_1830 phosphomannomutase~PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III%3B Alpha-D-phosphohexomutase%2C C-terminal gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2909 Alide2_2910 Alide2_2910 Alide2_2910 3035483 3036454 - hypothetical protein KEGG: dac:Daci_0982 hypothetical protein gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2910 Alide2_2911 Alide2_2911 Alide2_2911 3036467 3037441 - hypothetical protein KEGG: vei:Veis_0062 hypothetical protein gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2911 Alide2_2912 Alide2_2912 Alide2_2912 3037536 3038342 - KduI/IolB isomerase PFAM: KduI/IolB isomerase~KEGG: rsc:RCFBP_20182 myo-inositol catabolism protein%2C protein IolB gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2912 Alide2_2913 Alide2_2913 Alide2_2913 3038339 3040294 - 5-dehydro-2-deoxygluconokinase KEGG: dac:Daci_0985 ribokinase-like domain-containing protein~PFAM: Protein of unknown function DUF2090%3B Carbohydrate/purine kinase gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2913 Alide2_2914 Alide2_2914 Alide2_2914 3040389 3041261 + transcriptional regulator%2C RpiR family PFAM: Sugar isomerase (SIS)%3B Helix-turn-helix protein RpiR~KEGG: dac:Daci_0986 RpiR family transcriptional regulator gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2914 Alide2_2915 Alide2_2915 Alide2_2915 3041323 3042822 + DNA repair protein and transcriptional regulator%2C AraC family KEGG: ajs:Ajs_2020 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada~PFAM: AlkA%2C N-terminal%3B Ada DNA repair%2C metal-binding%3B HTH transcriptional regulator%2C AraC%3B HhH-GPD domain~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain%3B HhH-GPD domain gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2915 Alide2_2916 Alide2_2916 Alide2_2916 3042881 3043408 + methylated-DNA/protein-cysteine methyltransferase KEGG: dia:Dtpsy_1828 methylated-DNA/protein-cysteine methyltransferase~TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding~PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2916 Alide2_2917 Alide2_2917 Alide2_2917 3043405 3044328 + protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: dia:Dtpsy_1827 protein of unknown function DUF6 transmembrane gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2917 Alide2_2918 Alide2_2918 Alide2_2918 3044348 3045310 - adenylate/guanylate cyclase KEGG: aav:Aave_3080 putative adenylate/guanylate cyclase~PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase%3B Forkhead-associated (FHA) domain~SMART: Forkhead-associated (FHA) domain%3B Adenylyl cyclase class-3/4/guanylyl cyclase gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2918 Alide2_2919 Alide2_2919 Alide2_2919 3045516 3046487 - Muramoyltetrapeptide carboxypeptidase KEGG: dia:Dtpsy_1593 muramoyltetrapeptide carboxypeptidase~PFAM: Peptidase S66%2C LD-carboxypeptidase A gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2919 Alide2_2920 Alide2_2920 Alide2_2920 3046471 3047547 - CMP/dCMP deaminase zinc-binding protein PFAM: CMP/dCMP deaminase%2C zinc-binding%3B Alpha/beta hydrolase fold-1~KEGG: ajs:Ajs_2282 CMP/dCMP deaminase%2C zinc-binding gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2920 Alide2_2921 Alide2_2921 Alide2_2921 3047595 3048227 - FMN-binding negative transcriptional regulator PFAM: Negative transcriptional regulator~KEGG: vap:Vapar_2794 FMN-binding negative transcriptional regulator gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2921 Alide2_2922 Alide2_2922 Alide2_2922 3048280 3050253 + peptidase U32 PFAM: Peptidase U32~KEGG: dia:Dtpsy_1589 peptidase U32 gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2922 Alide2_2923 Alide2_2923 Alide2_2923 3050339 3051616 + O-acetylhomoserine/O-acetylserine sulfhydrylase TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase~KEGG: dia:Dtpsy_1588 O-acetylhomoserine/O-acetylserine sulfhydrylase~PFAM: Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2923 Alide2_2924 Alide2_2924 Alide2_2924 3051666 3052961 - Conserved hypothetical protein CHP03440 KEGG: dia:Dtpsy_1587 protein of unknown function DUF323~TIGRFAM: Conserved hypothetical protein CHP03440~PFAM: Sulphatase-modifying factor gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2924 Alide2_2925 Alide2_2925 Alide2_2925 3052975 3053949 - methyltransferase KEGG: dia:Dtpsy_1586 methyltransferase~TIGRFAM: Methyltransferase-like~PFAM: Protein of unknown function DUF2260 gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2925 Alide2_2926 Alide2_2926 Alide2_2926 3054199 3054789 - OmpW family protein KEGG: dia:Dtpsy_1585 OmpW family protein~manually curated~PFAM: Outer membrane protein%2C OmpW gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2926 Alide2_2927 Alide2_2927 Alide2_2927 3054934 3055926 - protein of unknown function DUF808 PFAM: Protein of unknown function DUF808~KEGG: ajs:Ajs_2290 hypothetical protein gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2927 Alide2_2928 Alide2_2928 Alide2_2928 3056030 3060049 - phosphoribosylformylglycinamidine synthase TIGRFAM: Phosphoribosylformylglycinamidine synthase~KEGG: dia:Dtpsy_1582 phosphoribosylformylglycinamidine synthase~PFAM: AIR synthase-related protein%2C C-terminal%3B AIR synthase-related protein gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2928 Alide2_2929 Alide2_2929 Alide2_2929 3060230 3061048 + methionine aminopeptidase%2C type I TIGRFAM: Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1~KEGG: dia:Dtpsy_1581 methionine aminopeptidase%2C type I~PFAM: Peptidase M24%2C structural domain gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2929 Alide2_2930 Alide2_2930 Alide2_2930 3061096 3063720 + UTP-GlnB uridylyltransferase%2C GlnD KEGG: dia:Dtpsy_1580 PII uridylyl-transferase~PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase%3B Domain of unknown function DUF294%2C nucleotidyltransferase putative%3B Metal-dependent phosphohydrolase%2C HD subdomain%3B Amino acid-binding ACT~TIGRFAM: Protein-PII uridylyltransferase~HAMAP: Protein-PII uridylyltransferase~SMART: Metal-dependent phosphohydrolase%2C HD domain gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2930 Alide2_2931 Alide2_2931 Alide2_2931 3063730 3065208 - xanthine permease KEGG: ctt:CtCNB1_3177 uracil-xanthine permease~TIGRFAM: Xanthine permease%3B Xanthine/uracil permease~PFAM: Xanthine/uracil/vitamin C permease gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2931 Alide2_2932 Alide2_2932 Alide2_2932 3065440 3065979 - peptide deformylase TIGRFAM: Formylmethionine deformylase~KEGG: dac:Daci_4855 peptide deformylase~PFAM: Formylmethionine deformylase gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2932 Alide2_2933 Alide2_2933 Alide2_2933 3066073 3066492 + protein of unknown function DUF454 PFAM: Protein of unknown function DUF454~KEGG: ajs:Ajs_2296 hypothetical protein gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2933 Alide2_2934 Alide2_2934 Alide2_2934 3066806 3067210 - pseudogene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2934 Alide2_2935 Alide2_2935 Alide2_2935 3067326 3067652 + Protein of unknown function DUF3423 PFAM: Protein of unknown function DUF3423 gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2935 Alide2_2936 Alide2_2936 Alide2_2936 3067654 3068256 + hypothetical protein KEGG: pzu:PHZ_c2128 hypothetical protein gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2936 Alide2_2937 Alide2_2937 Alide2_2937 3068541 3069800 - isocitrate dehydrogenase%2C NADP-dependent TIGRFAM: Isocitrate dehydrogenase NADP-dependent%2C prokaryotic~KEGG: aav:Aave_2572 isocitrate dehydrogenase~PFAM: Isocitrate/isopropylmalate dehydrogenase gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2937 Alide2_2938 Alide2_2938 Alide2_2938 3070323 3070796 + protein of unknown function DUF192 PFAM: Protein of unknown function DUF192~KEGG: dia:Dtpsy_1560 protein of unknown function DUF192 gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2938 Alide2_2939 Alide2_2939 Alide2_2939 3070866 3073103 - isocitrate dehydrogenase%2C NADP-dependent TIGRFAM: Isocitrate dehydrogenase NADP-dependent%2C monomeric type~KEGG: ajs:Ajs_2300 isocitrate dehydrogenase%2C NADP-dependent~PFAM: Isocitrate dehydrogenase NADP-dependent%2C monomeric type gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2939 Alide2_2940 Alide2_2940 Alide2_2940 3073403 3073984 - Superoxide dismutase KEGG: ajs:Ajs_2301 superoxide dismutase~PFAM: Manganese/iron superoxide dismutase%2C C-terminal%3B Manganese/iron superoxide dismutase%2C N-terminal gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2940 Alide2_2941 Alide2_2941 Alide2_2941 3074127 3075464 - Exodeoxyribonuclease 7 large subunit PFAM: Exonuclease VII%2C large subunit%2C C-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~TIGRFAM: Exonuclease VII%2C large subunit~HAMAP: Exonuclease VII%2C large subunit~KEGG: ajs:Ajs_2302 exodeoxyribonuclease VII large subunit gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2941 Alide2_2942 Alide2_2942 Alide2_2942 3075827 3076465 + MotA/TolQ/ExbB proton channel PFAM: MotA/TolQ/ExbB proton channel~KEGG: dia:Dtpsy_1556 MotA/TolQ/ExbB proton channel gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2942 Alide2_2943 Alide2_2943 Alide2_2943 3076473 3076898 + Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR~KEGG: dia:Dtpsy_1555 biopolymer transport protein ExbD/TolR gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2943 Alide2_2944 Alide2_2944 Alide2_2944 3076903 3077901 + tetraacyldisaccharide 4'-kinase TIGRFAM: Tetraacyldisaccharide 4'-kinase~KEGG: ajs:Ajs_2305 tetraacyldisaccharide 4'-kinase~PFAM: Tetraacyldisaccharide 4'-kinase gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2944 Alide2_2945 Alide2_2945 Alide2_2945 3077915 3078097 + protein of unknown function DUF343 PFAM: Uncharacterised protein family UPF0434/Trm112~KEGG: dia:Dtpsy_1553 protein of unknown function DUF343 gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2945 Alide2_2946 Alide2_2946 Alide2_2946 3078094 3078879 + 3-deoxy-manno-octulosonate cytidylyltransferase PFAM: Acylneuraminate cytidylyltransferase~TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase~HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase~KEGG: ajs:Ajs_2307 3-deoxy-D-manno-octulosonate cytidylyltransferase gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2946 Alide2_2947 Alide2_2947 Alide2_2947 3078978 3079634 + adenylate kinase KEGG: dia:Dtpsy_1551 adenylate kinase~TIGRFAM: Adenylate kinase%2C subfamily~PFAM: Adenylate kinase%3B Adenylate kinase%2C active site lid domain gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2947 Alide2_2948 Alide2_2948 Alide2_2948 3079707 3080669 - Asparaginase PFAM: Asparaginase/glutaminase~KEGG: dia:Dtpsy_1550 asparaginase~SMART: Asparaginase/glutaminase gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2948 Alide2_2949 Alide2_2949 Alide2_2949 3080749 3081423 + SOS-response transcriptional repressor%2C LexA KEGG: dia:Dtpsy_1549 LexA repressor~TIGRFAM: Peptidase S24%2C LexA repressor~PFAM: LexA%2C DNA-binding domain%3B Peptidase S24/S26A/S26B%2C conserved region gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2949 Alide2_2950 Alide2_2950 Alide2_2950 3081578 3081922 + hypothetical protein KEGG: ajs:Ajs_2311 hypothetical protein gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2950 Alide2_2951 Alide2_2951 Alide2_2951 3081930 3085910 - ATP-dependent helicase HrpA TIGRFAM: RNA helicase%2C ATP-dependent DEAH box%2C HrpA type~PFAM: Helicase-associated domain%3B Helicase%2C C-terminal%3B Domain of unknown function DUF1605~KEGG: dia:Dtpsy_1546 ATP-dependent helicase HrpA~SMART: Helicase-associated domain%3B DEAD-like helicase%2C N-terminal%3B ATPase%2C AAA+ type%2C core%3B Helicase%2C C-terminal gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2951 Alide2_2952 Alide2_2952 Alide2_2952 3085966 3087159 - acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2952 Alide2_2953 Alide2_2953 Alide2_2953 3087156 3088631 - o-succinylbenzoate--CoA ligase KEGG: dia:Dtpsy_1541 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2953 Alide2_2954 Alide2_2954 Alide2_2954 3088628 3089212 - BioY protein PFAM: BioY protein~KEGG: dia:Dtpsy_1540 BioY protein gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2954 Alide2_2955 Alide2_2955 Alide2_2955 3089250 3089843 - ABC-type transporter%2C integral membrane subunit PFAM: Cobalt transport protein~KEGG: ajs:Ajs_2320 cobalt transport protein gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2955 Alide2_2956 Alide2_2956 Alide2_2956 3089862 3090635 - ABC transporter related protein KEGG: dia:Dtpsy_1538 ABC transporter related~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2956 Alide2_2957 Alide2_2957 Alide2_2957 3091066 3091644 + hypothetical protein KEGG: bte:BTH_II1296 hypothetical protein gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2957 Alide2_2958 Alide2_2958 Alide2_2958 3091691 3092125 + hypothetical protein KEGG: gdj:Gdia_1658 hypothetical protein gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2958 Alide2_2959 Alide2_2959 Alide2_2959 3092179 3092628 + lactoylglutathione lyase TIGRFAM: Glyoxalase I~KEGG: dia:Dtpsy_1870 lactoylglutathione lyase~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2959 Alide2_2960 Alide2_2960 Alide2_2960 3092798 3093559 + hypothetical protein KEGG: vap:Vapar_2120 hypothetical protein gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2960 Alide2_2961 Alide2_2961 Alide2_2961 3093556 3093756 + hypothetical protein gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2961 Alide2_2962 Alide2_2962 Alide2_2962 3093990 3094493 - hypothetical protein manually curated~KEGG: bcm:Bcenmc03_6935 hypothetical protein gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2962 Alide2_2963 Alide2_2963 Alide2_2963 3094932 3095735 - IstB domain protein ATP-binding protein KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2963 Alide2_2964 Alide2_2964 Alide2_2964 3095725 3097251 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: axy:AXYL_06593 integrase family protein 10 gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2964 Alide2_2965 Alide2_2965 Alide2_2965 3097781 3098095 + protein of unknown function DUF736 PFAM: Protein of unknown function DUF736~KEGG: dac:Daci_0462 hypothetical protein gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2965 Alide2_2966 Alide2_2966 Alide2_2966 3098450 3098740 - helix-turn-helix domain protein KEGG: dac:Daci_0461 XRE family transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2966 Alide2_2967 Alide2_2967 Alide2_2967 3098952 3099299 + putative lipoprotein KEGG: tgr:Tgr7_1875 putative lipoprotein gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2967 Alide2_2968 Alide2_2968 Alide2_2968 3099593 3100342 + Protein of unknown function DUF2285 PFAM: Protein of unknown function DUF2285~KEGG: bpr:GBP346_A0953 hypothetical protein gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2968 Alide2_2969 Alide2_2969 Alide2_2969 3100426 3100707 + hypothetical protein KEGG: rpi:Rpic_2619 hypothetical protein gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2969 Alide2_2970 Alide2_2970 Alide2_2970 3100734 3101591 + Replication initiator protein A PFAM: Replication initiator protein A~KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2970 Alide2_2971 Alide2_2971 Alide2_2971 3101881 3102519 + Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: dac:Daci_2720 cobyrinic acid ac-diamide synthase gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2971 Alide2_2972 Alide2_2972 Alide2_2972 3102516 3102800 + hypothetical protein KEGG: bpt:Bpet2187 hypothetical protein gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2972 Alide2_2973 Alide2_2973 Alide2_2973 3102797 3103342 + hypothetical protein KEGG: rme:Rmet_1257 hypothetical protein gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2973 Alide2_2974 Alide2_2974 Alide2_2974 3103339 3103938 + Peptidase S26%2C conserved region PFAM: Peptidase S26%2C conserved region~KEGG: dia:Dtpsy_1292 TraF peptidase. Serine peptidase. MEROPS family S26C gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2974 Alide2_2975 Alide2_2975 Alide2_2975 3104399 3106381 + hypothetical protein KEGG: dac:Daci_0453 hypothetical protein gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2975 Alide2_2976 Alide2_2976 Alide2_2976 3106387 3107400 - Ferrochelatase PFAM: Ferrochelatase~TIGRFAM: Ferrochelatase~HAMAP: Ferrochelatase~KEGG: ajs:Ajs_1652 ferrochelatase gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2976 Alide2_2977 Alide2_2977 Alide2_2977 3107475 3108035 - bifunctional deaminase-reductase domain protein PFAM: Bacterial bifunctional deaminase-reductase%2C C-terminal~KEGG: mxa:MXAN_6138 riboflavin biosynthesis protein RibD domain-containing protein gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2977 Alide2_2978 Alide2_2978 Alide2_2978 3108094 3110652 - Protein of unknown function DUF2309 PFAM: Uncharacterised protein family UPF0753~KEGG: mei:Msip34_2093 hypothetical protein gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2978 Alide2_2979 Alide2_2979 Alide2_2979 3110679 3112244 - NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH:ubiquinone/plastoquinone oxidoreductase~KEGG: mei:Msip34_2092 NADH dehydrogenase subunit L gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2979 Alide2_2980 Alide2_2980 Alide2_2980 3112344 3113261 + transcriptional regulator%2C LysR family PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~KEGG: mep:MPQ_2042 transcriptional regulator%2C LysR family gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2980 Alide2_2981 Alide2_2981 Alide2_2981 3113406 3114386 - integral membrane protein%2C TerC family KEGG: lch:Lcho_3347 integral membrane protein TerC~TIGRFAM: Integral membrane protein TerC%2C riboswitch-linked~PFAM: Integral membrane protein TerC gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2981 Alide2_2982 Alide2_2982 Alide2_2982 3114442 3114849 - hypothetical protein KEGG: lch:Lcho_3349 hypothetical protein gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2982 Alide2_2983 Alide2_2983 Alide2_2983 3114915 3115145 - hypothetical protein KEGG: rme:Rmet_5308 hypothetical protein gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2983 Alide2_2984 Alide2_2984 Alide2_2984 3115266 3116192 + transcriptional regulator%2C LysR family PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~KEGG: tin:Tint_2185 transcriptional regulator%2C LysR family gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2984 Alide2_2985 Alide2_2985 Alide2_2985 3116229 3116909 + glutathione peroxidase KEGG: reu:Reut_A0042 glutathione peroxidase~manually curated~PFAM: Glutathione peroxidase gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2985 Alide2_2986 Alide2_2986 Alide2_2986 3116978 3117880 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B Domain of unknown function DUF1731%2C C-terminal~KEGG: bav:BAV2083 hypothetical protein gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2986 Alide2_2987 Alide2_2987 Alide2_2987 3117910 3118608 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: ctt:CtCNB1_1994 hypothetical protein gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2987 Alide2_2988 Alide2_2988 Alide2_2988 3118633 3120171 - deoxyribodipyrimidine photolyase-related protein PFAM: Deoxyribodipyrimidine photolyase-related protein~KEGG: ctt:CtCNB1_1993 deoxyribodipyrimidine photolyase-related protein gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2988 Alide2_2989 Alide2_2989 Alide2_2989 3120400 3121326 - beta-Ig-H3/fasciclin KEGG: reu:Reut_C6236 beta-Ig-H3/fasciclin~PFAM: FAS1 domain~SMART: FAS1 domain gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2989 Alide2_2990 Alide2_2990 Alide2_2990 3121434 3122984 - DNA photolyase FAD-binding protein PFAM: DNA photolyase%2C FAD-binding/Cryptochrome%2C C-terminal%3B DNA photolyase%2C N-terminal~KEGG: tmz:Tmz1t_3951 deoxyribodipyrimidine photo-lyase gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2990 Alide2_2991 Alide2_2991 Alide2_2991 3122998 3123600 - Lipocalin family protein PFAM: Lipocalin-like~KEGG: reu:Reut_C6237 outer membrane lipoprotein%2C lipocalin gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2991 Alide2_2992 Alide2_2992 Alide2_2992 3123619 3124593 - cobalamin B12-binding domain protein KEGG: reu:Reut_C6238 regulatory protein%2C MerR~PFAM: Cobalamin (vitamin B12)-binding%3B HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2992 Alide2_2993 Alide2_2993 Alide2_2993 3124712 3126016 + fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal~KEGG: bav:BAV2082 dehydrogenase gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2993 Alide2_2994 Alide2_2994 Alide2_2994 3126013 3126837 + protein of unknown function DUF1365 PFAM: Protein of unknown function DUF1365~KEGG: bav:BAV2081 hypothetical protein gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2994 Alide2_2995 Alide2_2995 Alide2_2995 3126840 3128060 + Cyclopropane-fatty-acyl-phospholipid synthase KEGG: dia:Dtpsy_2396 cyclopropane-fatty-acyl-phospholipid synthase~PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2995 Alide2_2996 Alide2_2996 Alide2_2996 3128159 3128686 + hypothetical protein KEGG: dia:Dtpsy_2394 hypothetical protein gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2996 Alide2_2997 Alide2_2997 Alide2_2997 3128683 3130002 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: bav:BAV2078 transporter gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2997 Alide2_2998 Alide2_2998 Alide2_2998 3129999 3130535 + putative lipoprotein KEGG: dia:Dtpsy_2392 putative lipoprotein gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2998 Alide2_2999 Alide2_2999 Alide2_2999 3130540 3131322 + short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: bav:BAV2076 short-chain dehydrogenase gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_2999 Alide2_3000 Alide2_3000 Alide2_3000 3131325 3131840 + isomerase KEGG: bav:BAV2075 isomerase gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3000 Alide2_3001 Alide2_3001 Alide2_3001 3131818 3132507 + Glutathione S-transferase domain protein PFAM: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal~KEGG: ajs:Ajs_1800 glutathione S-transferase domain-containing protein gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3001 Alide2_3002 Alide2_3002 Alide2_3002 3132562 3134025 + Deoxyribodipyrimidine photo-lyase KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I~PFAM: DNA photolyase%2C FAD-binding/Cryptochrome%2C C-terminal%3B DNA photolyase%2C N-terminal gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3002 Alide2_3003 Alide2_3003 Alide2_3003 3134038 3134568 + transcriptional regulator%2C LysR family PFAM: HTH transcriptional regulator%2C LysR%3B LysR%2C substrate-binding~KEGG: dia:Dtpsy_3510 transcriptional regulator%2C LysR family gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3003 Alide2_3004 Alide2_3004 Alide2_3004 3134628 3136154 + integrase catalytic subunit KEGG: bvi:Bcep1808_2622 integrase catalytic subunit gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3004 Alide2_3005 Alide2_3005 Alide2_3005 3136147 3136962 + IstB domain protein ATP-binding protein KEGG: mpt:Mpe_A2996 putative transposase~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3005 Alide2_3006 Alide2_3006 Alide2_3006 3137029 3137955 - protein of unknown function DUF1016 PFAM: Protein of unknown function DUF1016~KEGG: pau:PA14_31270 hypothetical protein gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3006 Alide2_3007 Alide2_3007 Alide2_3007 3137952 3139157 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ajs:Ajs_2625 phage integrase family protein gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3007 Alide2_3008 Alide2_3008 Alide2_3008 3139389 3140294 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: bpt:Bpet1402 transcriptional regulator CatR gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3008 Alide2_3009 Alide2_3009 Alide2_3009 3140359 3140997 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase TIGRFAM: KDPG/KHG aldolase~KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase~PFAM: KDPG/KHG aldolase gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3009 Alide2_3010 Alide2_3010 Alide2_3010 3140988 3142805 - 6-phosphogluconate dehydratase TIGRFAM: 6-phosphogluconate dehydratase~KEGG: ajs:Ajs_2049 phosphogluconate dehydratase~PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3010 Alide2_3011 Alide2_3011 Alide2_3011 3142932 3143942 - TRAP dicarboxylate transporter%2C DctP subunit KEGG: dia:Dtpsy_1873 TRAP dicarboxylate transporter%2C DctP subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3011 Alide2_3012 Alide2_3012 Alide2_3012 3143999 3145279 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: dia:Dtpsy_1874 TRAP dicarboxylate transporter%2C DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3012 Alide2_3013 Alide2_3013 Alide2_3013 3145290 3145811 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter%2C DctQ component~KEGG: dia:Dtpsy_1875 tripartite ATP-independent periplasmic transporter DctQ component gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3013 Alide2_3014 Alide2_3014 Alide2_3014 3145808 3146362 - carbohydrate kinase%2C thermoresistant glucokinase family PFAM: Shikimate kinase~manually curated~KEGG: ajs:Ajs_2053 carbohydrate kinase~TIGRFAM: Carbohydrate kinase%2C thermoresistant glucokinase gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3014 Alide2_3015 Alide2_3015 Alide2_3015 3146567 3147592 + transcriptional regulator%2C LacI family KEGG: ajs:Ajs_2054 LacI family transcription regulator~PFAM: Periplasmic binding protein/LacI transcriptional regulator%3B HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3015 Alide2_3016 Alide2_3016 Alide2_3016 3147638 3149986 - ATP-dependent Clp protease%2C ATP-binding subunit clpA TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA~PFAM: ATPase%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp%2C N-terminal%3B Clp ATPase%2C C-terminal~KEGG: dia:Dtpsy_1896 ATP-dependent Clp protease%2C ATP-binding subunit ClpA~SMART: ATPase%2C AAA+ type%2C core gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3016 Alide2_3017 Alide2_3017 Alide2_3017 3150046 3150408 - ATP-dependent Clp protease adapter protein clpS KEGG: dia:Dtpsy_1897 ATP-dependent Clp protease adaptor protein ClpS~HAMAP: ATP-dependent Clp protease adaptor protein ClpS~PFAM: Adaptor protein ClpS%2C core gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3017 Alide2_3018 Alide2_3018 Alide2_3018 3150468 3154016 - DNA polymerase III%2C alpha subunit SMART: Polymerase/histidinol phosphatase%2C N-terminal~TIGRFAM: DNA polymerase III%2C alpha subunit~KEGG: dia:Dtpsy_1898 DNA polymerase III%2C alpha subunit~PFAM: Bacterial DNA polymerase III%2C alpha subunit%3B PHP%2C C-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3018 Alide2_3019 Alide2_3019 Alide2_3019 3154145 3154942 + outer membrane assembly lipoprotein YfiO TIGRFAM: Outer membrane assembly lipoprotein YfiO~KEGG: dia:Dtpsy_1899 outer membrane assembly lipoprotein YfiO gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3019 Alide2_3020 Alide2_3020 Alide2_3020 3154905 3156977 - helicase c2 SMART: Helicase%2C ATP-dependent%2C c2 type~KEGG: ajs:Ajs_1828 helicase C2 gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3020 Alide2_3021 Alide2_3021 Alide2_3021 3157095 3157898 + protein serine/threonine phosphatase KEGG: dia:Dtpsy_1901 protein serine/threonine phosphatase~PFAM: Sporulation stage II%2C protein E C-terminal~SMART: Protein phosphatase 2C-like gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3021 Alide2_3022 Alide2_3022 Alide2_3022 3157902 3158597 - hypothetical protein KEGG: ajs:Ajs_1826 hypothetical protein gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3022 Alide2_3023 Alide2_3023 Alide2_3023 3158594 3159691 - AFG1-family ATPase PFAM: ATPase%2C AFG1-like~KEGG: dia:Dtpsy_1903 AFG1-family ATPase gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3023 Alide2_3024 Alide2_3024 Alide2_3024 3159768 3161195 - dihydrolipoamide dehydrogenase TIGRFAM: Dihydrolipoamide dehydrogenase~KEGG: ajs:Ajs_1824 dihydrolipoamide dehydrogenase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding region%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3024 Alide2_3025 Alide2_3025 Alide2_3025 3161281 3162537 - 2-oxoglutarate dehydrogenase%2C E2 subunit%2C dihydrolipoamide succinyltransferase TIGRFAM: Dihydrolipoamide succinyltransferase~KEGG: dia:Dtpsy_1905 2-oxoglutarate dehydrogenase%2C E2 subunit%2C dihydrolipoamide succinyltransferase~PFAM: 2-oxoacid dehydrogenase acyltransferase%2C catalytic domain%3B Biotin/lipoyl attachment%3B E3 binding gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3025 Alide2_3026 Alide2_3026 Alide2_3026 3162590 3165466 - 2-oxoglutarate dehydrogenase%2C E1 subunit SMART: Transketolase-like%2C pyrimidine-binding domain~TIGRFAM: 2-oxoglutarate dehydrogenase%2C E1 component~KEGG: ajs:Ajs_1822 2-oxoglutarate dehydrogenase E1 component~PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Dehydrogenase%2C E1 component gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3026 Alide2_3027 Alide2_3027 Alide2_3027 3165672 3166730 + protein of unknown function UPF0118 PFAM: Uncharacterised protein family UPF0118~KEGG: dia:Dtpsy_1907 protein of unknown function UPF0118 gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3027 Alide2_3028 Alide2_3028 Alide2_3028 3166798 3167781 - hypothetical protein KEGG: dia:Dtpsy_1908 hypothetical protein gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3028 Alide2_3029 Alide2_3029 Alide2_3029 3167832 3168194 - hypothetical protein KEGG: dia:Dtpsy_1909 hypothetical protein gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3029 Alide2_3030 Alide2_3030 Alide2_3030 3168209 3169561 - protein of unknown function DUF1446 PFAM: Protein of unknown function DUF1446~KEGG: dia:Dtpsy_1910 protein of unknown function DUF1446 gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3030 Alide2_3031 Alide2_3031 Alide2_3031 3169654 3170559 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_1817 LysR family transcriptional regulator gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3031 Alide2_3032 Alide2_3032 Alide2_3032 3170697 3171563 + UspA domain-containing protein PFAM: UspA~KEGG: ajs:Ajs_1816 UspA domain-containing protein gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3032 Alide2_3033 Alide2_3033 Alide2_3033 3171583 3173220 - Nickel-transporting ATPase%2C Polyamine-transporting ATPase PFAM: ABC transporter-like%3B Oligopeptide/dipeptide ABC transporter%2C C-terminal~KEGG: dia:Dtpsy_1915 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3033 Alide2_3034 Alide2_3034 Alide2_3034 3173222 3174262 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component%3B Mitochondrial distribution and morphology protein family 31/32%2C fungi~KEGG: dia:Dtpsy_1916 binding-protein-dependent transport systems inner membrane component gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3034 Alide2_3035 Alide2_3035 Alide2_3035 3174246 3175283 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: ajs:Ajs_1811 binding-protein-dependent transport systems inner membrane component gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3035 Alide2_3036 Alide2_3036 Alide2_3036 3175301 3175762 - Isoprenylcysteine carboxyl methyltransferase PFAM: Isoprenylcysteine carboxyl methyltransferase~KEGG: dia:Dtpsy_2487 putative protein-S-isoprenylcysteine methyltransferase-like protein gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3036 Alide2_3037 Alide2_3037 Alide2_3037 3175808 3177631 - ABC-type transporter%2C periplasmic subunit PFAM: Bacterial extracellular solute-binding protein%2C family 5~KEGG: dia:Dtpsy_1918 extracellular solute-binding protein family 5 gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3037 Alide2_3038 Alide2_3038 Alide2_3038 3177677 3178477 + Enoyl-(acyl-carrier-protein) reductase (NADH) KEGG: dia:Dtpsy_1919 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3038 Alide2_3039 Alide2_3039 Alide2_3039 3178573 3179481 + protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: rsc:RCFBP_10755 multidrug resistance efflux transporter gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3039 Alide2_3040 Alide2_3040 Alide2_3040 3179541 3179765 - protein of unknown function DUF465 PFAM: Protein of unknown function DUF465~KEGG: cvi:CV_3311 hypothetical protein gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3040 Alide2_3041 Alide2_3041 Alide2_3041 3179914 3180828 + DNA ligase (ATP) KEGG: dia:Dtpsy_2251 DNA ligase~PFAM: DNA ligase%2C ATP-dependent%2C central gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3041 Alide2_3042 Alide2_3042 Alide2_3042 3181003 3181752 + integral membrane protein%2C YjbE family KEGG: aav:Aave_4673 integral membrane protein TerC~TIGRFAM: Integral membrane protein YjbE~PFAM: Integral membrane protein TerC gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3042 Alide2_3043 Alide2_3043 Alide2_3043 3181813 3184173 - Lysine decarboxylase KEGG: ajs:Ajs_2762 ornithine decarboxylase~PFAM: Orn/Lys/Arg decarboxylase%2C major domain%3B Orn/Lys/Arg decarboxylase%2C N-terminal%3B Orn/Lys/Arg decarboxylase%2C C-terminal gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3043 Alide2_3044 Alide2_3044 Alide2_3044 3184322 3184753 + hypothetical protein KEGG: dia:Dtpsy_2253 hypothetical protein gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3044 Alide2_3045 Alide2_3045 Alide2_3045 3184823 3185740 + band 7 protein KEGG: dia:Dtpsy_2254 band 7 protein~PFAM: Band 7 protein~SMART: Band 7 protein gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3045 Alide2_3046 Alide2_3046 Alide2_3046 3185737 3186639 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: rfr:Rfer_0879 LysR family transcriptional regulator gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3046 Alide2_3047 Alide2_3047 Alide2_3047 3186832 3188556 + Acetolactate synthase KEGG: ajs:Ajs_2520 thiamine pyrophosphate protein~PFAM: Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding%3B Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain%3B Thiamine pyrophosphate enzyme%2C central domain gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3047 Alide2_3048 Alide2_3048 Alide2_3048 3188843 3189358 + pseudogene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3048 Alide2_3049 Alide2_3049 Alide2_3049 3189677 3189808 + hypothetical protein gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3049 Alide2_3050 Alide2_3050 Alide2_3050 3189909 3190118 + protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: ctt:CtCNB1_1524 hypothetical protein gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3050 Alide2_3051 Alide2_3051 Alide2_3051 3190105 3190893 + hypothetical protein manually curated~KEGG: ecc:c5378 hypothetical protein gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3051 Alide2_3052 Alide2_3052 Alide2_3052 3190925 3191839 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3052 Alide2_3053 Alide2_3053 Alide2_3053 3191836 3192159 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3053 Alide2_3054 Alide2_3054 Alide2_3054 3192328 3193665 + hypothetical protein KEGG: rme:Rmet_3347 hypothetical protein gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3054 Alide2_3055 Alide2_3055 Alide2_3055 3194285 3195100 - transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: aav:Aave_4617 transposase%2C IS4 family protein gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3055 Alide2_3056 Alide2_3056 Alide2_3056 3195277 3196050 + DNA/RNA non-specific endonuclease KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease~PFAM: DNA/RNA non-specific endonuclease~SMART: DNA/RNA non-specific endonuclease%3B Extracellular Endonuclease%2C subunit A gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3056 Alide2_3057 Alide2_3057 Alide2_3057 3196333 3197847 - transposase IS66 PFAM: Transposase%2C IS66~KEGG: dia:Dtpsy_2523 transposase IS66 gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3057 Alide2_3058 Alide2_3058 Alide2_3058 3197930 3198262 - IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2-like~KEGG: rfr:Rfer_2710 IS66 Orf2 like gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3058 Alide2_3059 Alide2_3059 Alide2_3059 3198259 3198687 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: rfr:Rfer_2709 transposase IS3/IS911 gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3059 Alide2_3060 Alide2_3060 Alide2_3060 3198747 3199073 + hypothetical protein manually curated~KEGG: alv:Alvin_3273 hypothetical protein gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3060 Alide2_3061 Alide2_3061 Alide2_3061 3199176 3200150 + phage/plasmid-related protein TIGR03299 TIGRFAM: Conserved hypothetical protein CHP03299%2C phage/plasmid-related~KEGG: ctt:CtCNB1_1504 hypothetical protein gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3061 Alide2_3062 Alide2_3062 Alide2_3062 3200291 3201319 + phage-type endonuclease KEGG: har:HEAR0514 hypothetical protein~TIGRFAM: Putative phage-type endonuclease~PFAM: YqaJ viral recombinase family gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3062 Alide2_3063 Alide2_3063 Alide2_3063 3201430 3202455 + hypothetical protein KEGG: pag:PLES_23531 hypothetical protein gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3063 Alide2_3064 Alide2_3064 Alide2_3064 3202442 3203296 + hypothetical protein gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3064 Alide2_3065 Alide2_3065 Alide2_3065 3203609 3203770 - hypothetical protein gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3065 Alide2_3066 Alide2_3066 Alide2_3066 3203781 3204320 - hypothetical protein KEGG: abn:AB57_0651 hypothetical protein gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3066 Alide2_3067 Alide2_3067 Alide2_3067 3204480 3204743 + helix-turn-helix domain protein manually curated~PFAM: Helix-turn-helix type 3~KEGG: rsl:RPSI07_1481 putative HTH-type transcriptional regulator~SMART: Helix-turn-helix type 3 gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3067 Alide2_3068 Alide2_3068 Alide2_3068 3204896 3206383 - hypothetical protein KEGG: dap:Dacet_0600 hypothetical protein gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3068 Alide2_3069 Alide2_3069 Alide2_3069 3207053 3209449 + DNA polymerase B region KEGG: vap:Vapar_6015 DNA polymerase II~PFAM: DNA-directed DNA polymerase%2C family B%2C conserved region%3B DNA-directed DNA polymerase%2C family B%2C exonuclease domain~SMART: DNA-directed DNA polymerase%2C family B gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3069 Alide2_3070 Alide2_3070 Alide2_3070 3209572 3210234 - transposase KEGG: ppg:PputGB1_4754 transposase gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3070 Alide2_3071 Alide2_3071 Alide2_3071 3210462 3210644 - phage transcriptional regulator%2C AlpA PFAM: Prophage CP4-57 regulatory~KEGG: ppg:PputGB1_4755 phage transcriptional regulator%2C AlpA gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3071 Alide2_3072 Alide2_3072 Alide2_3072 3211314 3212240 + hypothetical protein KEGG: ppg:PputGB1_4756 hypothetical protein gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3072 Alide2_3073 Alide2_3073 Alide2_3073 3212314 3213570 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ecp:ECP_1909 Int/Topo IB signature motif%3B other site gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3073 Alide2_3074 Alide2_3074 Alide2_3074 3213930 3214907 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic%3B Sel1-like~KEGG: rfr:Rfer_0483 lytic transglycosylase%2C catalytic gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3074 Alide2_3075 Alide2_3075 Alide2_3075 3214953 3215565 - pseudogene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3075 Alide2_3076 Alide2_3076 Alide2_3076 3215653 3216307 - pseudogene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3076 Alide2_3077 Alide2_3077 Alide2_3077 3216318 3217394 - pseudogene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3077 Alide2_3078 Alide2_3078 Alide2_3078 3217566 3217774 - pseudogene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3078 Alide2_3079 Alide2_3079 Alide2_3079 3217826 3218659 - 3-oxoacyl-(acyl-carrier-protein) reductase PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: ctt:CtCNB1_1711 short-chain dehydrogenase/reductase SDR~SMART: Polyketide synthase/Fatty acid synthase%2C KR gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3079 Alide2_3080 Alide2_3080 Alide2_3080 3218675 3220279 - Long-chain-fatty-acid--CoA ligase KEGG: tfu:Tfu_1300 DitJ-like CoA ligase~PFAM: AMP-dependent synthetase/ligase gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3080 Alide2_3081 Alide2_3081 Alide2_3081 3220291 3220884 - Carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase~KEGG: kko:Kkor_1470 carboxymuconolactone decarboxylase gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3081 Alide2_3082 Alide2_3082 Alide2_3082 3220928 3221635 - ABC transporter related protein KEGG: axy:AXYL_02565 ABC transporter family protein 37~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3082 Alide2_3083 Alide2_3083 Alide2_3083 3221632 3222384 - Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: axy:AXYL_02566 ABC transporter family protein 38~SMART: ATPase%2C AAA+ type%2C core gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3083 Alide2_3084 Alide2_3084 Alide2_3084 3222381 3223349 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: axy:AXYL_02567 inner-membrane translocator 29 gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3084 Alide2_3085 Alide2_3085 Alide2_3085 3223346 3224203 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: axy:AXYL_02568 inner-membrane translocator 30 gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3085 Alide2_3086 Alide2_3086 Alide2_3086 3224272 3225468 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: axy:AXYL_02569 ABC branched chain amino acid family transporter%2C periplasmic ligand binding protein gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3086 Alide2_3087 Alide2_3087 Alide2_3087 3225506 3226315 - 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3087 Alide2_3088 Alide2_3088 Alide2_3088 3226327 3227514 - Propanoyl-CoA C-acyltransferase KEGG: bxe:Bxe_B2740 lipid-transfer protein~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3088 Alide2_3089 Alide2_3089 Alide2_3089 3227570 3229135 - Long-chain-fatty-acid--CoA ligase KEGG: azl:AZL_a10790 long-chain fatty-acid-CoA ligase~PFAM: AMP-dependent synthetase/ligase gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3089 Alide2_3090 Alide2_3090 Alide2_3090 3229354 3230049 + putative TetR family transcriptional regulator KEGG: rme:Rmet_3794 putative TetR family transcriptional regulator gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3090 Alide2_3091 Alide2_3091 Alide2_3091 3230240 3230371 - hypothetical protein gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3091 Alide2_3092 Alide2_3092 Alide2_3092 3230437 3231456 - sulfate ABC transporter%2C periplasmic sulfate-binding protein KEGG: ajs:Ajs_1799 sulfate ABC transporter%2C periplasmic sulfate-binding protein~TIGRFAM: Thiosulphate-binding protein%3B Twin-arginine translocation pathway%2C signal sequence~PFAM: Bacterial extracellular solute-binding%2C family 1 gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3092 Alide2_3093 Alide2_3093 Alide2_3093 3231581 3231853 + Fe(II) trafficking protein YggX PFAM: Fe(II) trafficking protein YggX~KEGG: ctt:CtCNB1_3078 Fe(II) trafficking protein YggX gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3093 Alide2_3094 Alide2_3094 Alide2_3094 3231925 3232590 + Uncharacterized protein family UPF0126 PFAM: Uncharacterised protein family UPF0126~KEGG: dia:Dtpsy_1925 protein of unknown function UPF0126 gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3094 Alide2_3095 Alide2_3095 Alide2_3095 3232587 3234470 + tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC%2C C-terminal~HAMAP: tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC~KEGG: dac:Daci_4644 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC~PFAM: FAD dependent oxidoreductase%3B Domain of unknown function DUF752 gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3095 Alide2_3096 Alide2_3096 Alide2_3096 3234580 3235383 + protein of unknown function DUF81 PFAM: Protein of unknown function DUF81~KEGG: aav:Aave_3052 hypothetical protein gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3096 Alide2_3097 Alide2_3097 Alide2_3097 3235410 3237197 + nitrite and sulphite reductase 4Fe-4S region PFAM: Nitrite/sulphite reductase 4Fe-4S domain%3B Nitrite/sulphite reductase%2C hemoprotein beta-component%2C ferrodoxin-like~KEGG: dia:Dtpsy_1927 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3097 Alide2_3098 Alide2_3098 Alide2_3098 3237227 3237622 + Uncharacterized conserved protein UCP030820 PFAM: Uncharacterised conserved protein UCP030820~KEGG: dia:Dtpsy_1928 hypothetical protein gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3098 Alide2_3099 Alide2_3099 Alide2_3099 3237619 3238242 + Phosphoadenylyl-sulfate reductase (thioredoxin) KEGG: ajs:Ajs_1793 phosphoadenylylsulfate reductase (thioredoxin)~PFAM: Phosphoadenosine phosphosulphate reductase gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3099 Alide2_3100 Alide2_3100 Alide2_3100 3238308 3239264 + Sulfate adenylyltransferase KEGG: aav:Aave_3055 sulfate adenylyltransferase subunit 2~PFAM: Phosphoadenosine phosphosulphate reductase gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3100 Alide2_3101 Alide2_3101 Alide2_3101 3239264 3240631 + sulfate adenylyltransferase%2C large subunit TIGRFAM: Sulphate adenylyltransferase%2C large subunit~KEGG: dia:Dtpsy_1931 sulfate adenylyltransferase%2C large subunit~PFAM: Protein synthesis factor%2C GTP-binding gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3101 Alide2_3102 Alide2_3102 Alide2_3102 3240759 3241082 + Ferredoxin%2C C-terminal protein PFAM: Ferredoxin%2C C-terminal%3B 4Fe-4S binding domain~KEGG: dia:Dtpsy_1932 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3102 Alide2_3103 Alide2_3103 Alide2_3103 3241097 3242143 + Ferredoxin--NADP(+) reductase KEGG: dia:Dtpsy_1933 FAD-dependent pyridine nucleotide-disulphide oxidoreductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3103 Alide2_3104 Alide2_3104 Alide2_3104 3242140 3243411 + permease for cytosine/purines uracil thiamine allantoin PFAM: Permease%2C cytosine/purines%2C uracil%2C thiamine%2C allantoin~KEGG: ctt:CtCNB1_2972 cytosine/purines/uracil permease gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3104 Alide2_3105 Alide2_3105 Alide2_3105 3243498 3243974 + SH3 type 3 domain protein KEGG: dia:Dtpsy_1934 SH3 type 3 domain protein~PFAM: SH3%2C type 3%3B Protein of unknown function DUF1058~SMART: SH3-like domain%2C bacterial gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3105 Alide2_3106 Alide2_3106 Alide2_3106 3243985 3244833 - phosphomethylpyrimidine kinase TIGRFAM: Phosphomethylpyrimidine kinase type-2~KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase~PFAM: Phosphomethylpyrimidine kinase type-1 gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3106 Alide2_3107 Alide2_3107 Alide2_3107 3245028 3246146 + glycine oxidase ThiO KEGG: dia:Dtpsy_1936 FAD dependent oxidoreductase~TIGRFAM: Glycine oxidase ThiO~PFAM: FAD dependent oxidoreductase gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3107 Alide2_3108 Alide2_3108 Alide2_3108 3246143 3246340 + thiamine biosynthesis protein ThiS KEGG: dia:Dtpsy_1937 thiamine biosynthesis protein ThiS~TIGRFAM: ThiS%2C thiamine-biosynthesis~PFAM: ThiamineS gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3108 Alide2_3109 Alide2_3109 Alide2_3109 3246356 3247159 + Thiazole synthase KEGG: dia:Dtpsy_1938 thiazole synthase~HAMAP: Thiazole biosynthesis~PFAM: Thiazole biosynthesis gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3109 Alide2_3110 Alide2_3110 Alide2_3110 3247160 3248062 + Thiamine-phosphate diphosphorylase KEGG: dia:Dtpsy_1939 thiamine-phosphate pyrophosphorylase~PFAM: Thiamine monophosphate synthase gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3110 Alide2_3111 Alide2_3111 Alide2_3111 3248073 3250091 - hypothetical protein KEGG: dia:Dtpsy_1940 hypothetical protein gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3111 Alide2_3112 Alide2_3112 Alide2_3112 3250169 3251689 + 3-hydroxybutyryl-CoA dehydrogenase KEGG: dia:Dtpsy_1941 3-hydroxy-acyl-CoA dehydrogenase~PFAM: 3-hydroxyacyl-CoA dehydrogenase%2C NAD binding%3B 3-hydroxyacyl-CoA dehydrogenase%2C C-terminal gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3112 Alide2_3113 Alide2_3113 Alide2_3113 3251700 3252479 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: dia:Dtpsy_1942 enoyl-CoA hydratase/isomerase gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3113 Alide2_3114 Alide2_3114 Alide2_3114 3252669 3253388 + transcriptional regulator%2C Crp/Fnr family KEGG: ajs:Ajs_1779 Crp/FNR family transcriptional regulator~PFAM: Cyclic nucleotide-binding domain~SMART: Cyclic nucleotide-binding domain%3B HTH transcriptional regulator%2C Crp gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3114 Alide2_3115 Alide2_3115 Alide2_3115 3253444 3254535 + aminoglycoside phosphotransferase PFAM: Aminoglycoside phosphotransferase~KEGG: ajs:Ajs_1778 aminoglycoside phosphotransferase gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3115 Alide2_3116 Alide2_3116 Alide2_3116 3254551 3255792 + Isovaleryl-CoA dehydrogenase KEGG: dia:Dtpsy_1945 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3116 Alide2_3117 Alide2_3117 Alide2_3117 3255938 3259933 + delta-1-pyrroline-5-carboxylate dehydrogenase KEGG: dac:Daci_5941 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase~TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3~PFAM: Proline dehydrogenase%3B Aldehyde dehydrogenase domain gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3117 Alide2_3118 Alide2_3118 Alide2_3118 3260136 3261638 + SSS sodium solute transporter superfamily KEGG: dac:Daci_5942 sodium/proline symporter~TIGRFAM: Sodium/solute symporter%2C subgroup%3B Sodium/proline symporter~PFAM: Sodium/solute symporter gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3118 Alide2_3119 Alide2_3119 Alide2_3119 3261722 3262534 + transcriptional regulator%2C IclR family KEGG: dia:Dtpsy_1946 transcriptional regulator%2C IclR family~PFAM: Transcription regulator IclR%2C C-terminal%3B Transcription regulator IclR%2C N-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3119 Alide2_3120 Alide2_3120 Alide2_3120 3262572 3263666 - peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 PFAM: Peptidase S11%2C D-alanyl-D-alanine carboxypeptidase A%2C N-terminal~KEGG: ajs:Ajs_1775 murein-dd-endopeptidase gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3120 Alide2_3121 Alide2_3121 Alide2_3121 3263782 3265323 - 2-isopropylmalate synthase SMART: 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain~TIGRFAM: 2-isopropylmalate synthase%2C bacterial type~KEGG: ajs:Ajs_1774 2-isopropylmalate synthase~PFAM: Pyruvate carboxyltransferase%3B 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3121 Alide2_3122 Alide2_3122 Alide2_3122 3265359 3267026 - 2-isopropylmalate synthase SMART: 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain~TIGRFAM: Yeast 2-isopropylmalate synthase~KEGG: dia:Dtpsy_1949 2-isopropylmalate synthase~PFAM: Pyruvate carboxyltransferase%3B 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3122 Alide2_3123 Alide2_3123 Alide2_3123 3267234 3268142 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: pol:Bpro_3346 LysR family transcriptional regulator gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3123 Alide2_3124 Alide2_3124 Alide2_3124 3268275 3268829 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: azo:azo3679 glyoxalase-family protein gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3124 Alide2_3125 Alide2_3125 Alide2_3125 3268858 3270231 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: hse:Hsero_1116 4-hydroxybenzoate transporter transmembrane protein gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3125 Alide2_3126 Alide2_3126 Alide2_3126 3270307 3271320 + fumarylacetoacetate (FAA) hydrolase PFAM: Fumarylacetoacetase%2C C-terminal-like~KEGG: tmz:Tmz1t_0853 fumarylacetoacetate (FAA) hydrolase gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3126 Alide2_3127 Alide2_3127 Alide2_3127 3271331 3271999 + maleylacetoacetate isomerase TIGRFAM: Maleylacetoacetate isomerase~KEGG: xtr:100496290 probable maleylacetoacetate isomerase-like~PFAM: Glutathione S-transferase%2C N-terminal gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3127 Alide2_3128 Alide2_3128 Alide2_3128 3272024 3272860 - CDP-diacylglycerol/serine O-phosphatidyltransferase KEGG: xtr:100496448 CDP-diacylglycerol--serine O-phosphatidyltransferase-like~TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3128 Alide2_3129 Alide2_3129 Alide2_3129 3273038 3274054 - ketol-acid reductoisomerase TIGRFAM: Acetohydroxy acid isomeroreductase~KEGG: dia:Dtpsy_1951 ketol-acid reductoisomerase~PFAM: Acetohydroxy acid isomeroreductase%2C catalytic%3B Acetohydroxy acid isomeroreductase C-terminal gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3129 Alide2_3130 Alide2_3130 Alide2_3130 3274123 3274614 - acetolactate synthase%2C small subunit KEGG: ctt:CtCNB1_1659 acetolactate synthase%2C small subunit~TIGRFAM: Acetolactate synthase%2C small subunit~PFAM: Acetolactate synthase%2C small subunit%2C C-terminal%3B Amino acid-binding ACT gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3130 Alide2_3131 Alide2_3131 Alide2_3131 3274802 3276595 - acetolactate synthase%2C large subunit%2C biosynthetic type TIGRFAM: Acetolactate synthase%2C large subunit%2C biosynthetic~KEGG: ajs:Ajs_1769 acetolactate synthase 3 catalytic subunit~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding%3B Thiamine pyrophosphate enzyme%2C central domain gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3131 Alide2_3132 Alide2_3132 Alide2_3132 3276884 3277453 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: dia:Dtpsy_1954 RNA polymerase factor sigma-70~TIGRFAM: RNA polymerase sigma-70~PFAM: RNA polymerase sigma factor 70%2C region 4 type 2 gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3132 Alide2_3133 Alide2_3133 Alide2_3133 3277450 3277911 + Protein of unknown function DUF3619 PFAM: Protein of unknown function DUF3619~KEGG: dia:Dtpsy_1955 putative transmembrane protein gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3133 Alide2_3134 Alide2_3134 Alide2_3134 3277935 3278759 + Protein of unknown function DUF3106 PFAM: Protein of unknown function DUF3106~KEGG: ajs:Ajs_1766 putative transmembrane protein gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3134 Alide2_3135 Alide2_3135 Alide2_3135 3278787 3279359 + RDD domain containing protein PFAM: RDD~KEGG: ajs:Ajs_1765 RDD domain-containing protein gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3135 Alide2_3136 Alide2_3136 Alide2_3136 3279422 3279820 + diacylglycerol kinase PFAM: Diacylglycerol kinase%2C prokaryotic~KEGG: dia:Dtpsy_1958 diacylglycerol kinase gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3136 Alide2_3137 Alide2_3137 Alide2_3137 3279813 3280406 + Conserved hypothetical protein CHP00730 KEGG: dia:Dtpsy_1959 hypothetical protein~TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG~PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3137 Alide2_3138 Alide2_3138 Alide2_3138 3280416 3280754 - nitrogen regulatory protein P-II KEGG: dia:Dtpsy_1960 nitrogen regulatory protein P-II~PFAM: Nitrogen regulatory protein PII~SMART: Nitrogen regulatory protein PII gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3138 Alide2_3139 Alide2_3139 Alide2_3139 3280805 3282463 - NAD+ synthetase TIGRFAM: NAD synthase~KEGG: vei:Veis_1737 NAD+ synthetase~PFAM: NAD/GMP synthase%3B Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3139 Alide2_3140 Alide2_3140 Alide2_3140 3282586 3282726 + pseudogene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3140 Alide2_3141 Alide2_3141 Alide2_3141 3282758 3283981 + protein of unknown function DUF482 PFAM: Protein of unknown function DUF482~KEGG: vei:Veis_1736 hypothetical protein gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3141 Alide2_3142 Alide2_3142 Alide2_3142 3283978 3285735 - methyl-accepting chemotaxis sensory transducer KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3142 Alide2_3143 Alide2_3143 Alide2_3143 3285748 3286254 - CheW protein KEGG: ajs:Ajs_1759 putative CheW protein~PFAM: CheW-like protein~SMART: CheW-like protein gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3143 Alide2_3144 Alide2_3144 Alide2_3144 3286456 3286989 - Inorganic diphosphatase KEGG: dia:Dtpsy_1964 inorganic diphosphatase~PFAM: Inorganic pyrophosphatase gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3144 Alide2_3145 Alide2_3145 Alide2_3145 3287204 3289285 + Pyrophosphate-energized proton pump PFAM: Pyrophosphate-energised proton pump~TIGRFAM: Pyrophosphate-energised proton pump~HAMAP: Pyrophosphate-energised proton pump~KEGG: dia:Dtpsy_1965 membrane-bound proton-translocating pyrophosphatase gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3145 Alide2_3146 Alide2_3146 Alide2_3146 3289450 3290883 + Aldehyde Dehydrogenase PFAM: Aldehyde dehydrogenase domain~KEGG: dia:Dtpsy_1966 aldehyde dehydrogenase gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3146 Alide2_3147 Alide2_3147 Alide2_3147 3290893 3291450 + hypothetical protein KEGG: ajs:Ajs_1755 hypothetical protein gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3147 Alide2_3148 Alide2_3148 Alide2_3148 3291499 3292341 - hypothetical protein KEGG: dia:Dtpsy_1968 hypothetical protein gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3148 Alide2_3149 Alide2_3149 Alide2_3149 3292469 3293638 + molybdenum cofactor biosynthesis protein A TIGRFAM: Molybdenum cofactor biosynthesis protein A~PFAM: Molybdenum cofactor synthesis C-terminal%3B Radical SAM~KEGG: dia:Dtpsy_1969 molybdenum cofactor biosynthesis protein A~SMART: Elongator protein 3/MiaB/NifB gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3149 Alide2_3150 Alide2_3150 Alide2_3150 3293642 3294274 + molybdopterin-guanine dinucleotide biosynthesis protein A TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A~KEGG: dia:Dtpsy_1970 molybdopterin-guanine dinucleotide biosynthesis protein MobA gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3150 Alide2_3151 Alide2_3151 Alide2_3151 3294271 3294846 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase (GNAT) domain~KEGG: aav:Aave_2657 GCN5-related N-acetyltransferase gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3151 Alide2_3152 Alide2_3152 Alide2_3152 3294833 3296191 + molybdenum cofactor synthesis domain protein TIGRFAM: Molybdenum cofactor synthesis~PFAM: Molybdopterin binding%3B MoeA%2C N-terminal and linker domain%3B MoeA%2C C-terminal%2C domain IV~KEGG: dia:Dtpsy_1971 molybdenum cofactor synthesis domain protein~SMART: Molybdopterin binding gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3152 Alide2_3153 Alide2_3153 Alide2_3153 3296193 3296519 + Thioredoxin domain-containing protein PFAM: Thioredoxin domain~KEGG: dia:Dtpsy_1972 thioredoxin domain protein gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3153 Alide2_3154 Alide2_3154 Alide2_3154 3296516 3296902 + hypothetical protein KEGG: dac:Daci_4475 hypothetical protein gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3154 Alide2_3155 Alide2_3155 Alide2_3155 3296889 3297875 - hypothetical protein KEGG: bbr:BB4338 hypothetical protein gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3155 Alide2_3156 Alide2_3156 Alide2_3156 3297955 3298632 - Dimethylmenaquinone methyltransferase PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase~KEGG: rsl:RPSI07_mp1263 dimethylmenaquinone methyltransferase%3B protein gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3156 Alide2_3157 Alide2_3157 Alide2_3157 3298668 3299570 - ABC-type transporter%2C periplasmic subunit family 3 KEGG: aav:Aave_4073 extracellular solute-binding protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3157 Alide2_3158 Alide2_3158 Alide2_3158 3299724 3300650 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: rso:RS03179 transcription regulator protein gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3158 Alide2_3159 Alide2_3159 Alide2_3159 3300789 3301463 + Dimethylmenaquinone methyltransferase PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase~KEGG: app:CAP2UW1_2990 dimethylmenaquinone methyltransferase gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3159 Alide2_3160 Alide2_3160 Alide2_3160 3301469 3302101 + Dimethylmenaquinone methyltransferase PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase~KEGG: app:CAP2UW1_2989 dimethylmenaquinone methyltransferase gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3160 Alide2_3161 Alide2_3161 Alide2_3161 3302098 3303315 + Aspartate transaminase KEGG: rso:RSp1232 aspartate aminotransferase A protein~PFAM: Aminotransferase%2C class I/classII gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3161 Alide2_3162 Alide2_3162 Alide2_3162 3303418 3303864 - Ribonuclease H KEGG: dia:Dtpsy_1973 ribonuclease H~HAMAP: Ribonuclease H~PFAM: Ribonuclease H domain gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3162 Alide2_3163 Alide2_3163 Alide2_3163 3303910 3304692 - Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: ajs:Ajs_1744 methyltransferase type 11 gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3163 Alide2_3164 Alide2_3164 Alide2_3164 3304697 3305467 + Hydroxyacylglutathione hydrolase SMART: Beta-lactamase-like~TIGRFAM: Hydroxyacylglutathione hydrolase~KEGG: dia:Dtpsy_1975 hydroxyacylglutathione hydrolase~HAMAP: Hydroxyacylglutathione hydrolase~PFAM: Beta-lactamase-like gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3164 Alide2_3165 Alide2_3165 Alide2_3165 3305464 3306978 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic%3B MLTD-N%3B Peptidoglycan-binding lysin domain~KEGG: ajs:Ajs_1742 lytic transglycosylase%2C catalytic gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3165 Alide2_3166 Alide2_3166 Alide2_3166 3306996 3307148 - Protein of unknown function DUF3096 PFAM: Protein of unknown function DUF3096~KEGG: dia:Dtpsy_1977 hypothetical protein gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3166 Alide2_3167 Alide2_3167 Alide2_3167 3307247 3308296 - hypothetical protein KEGG: aav:Aave_2648 putative signal peptide protein gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3167 Alide2_3168 Alide2_3168 Alide2_3168 3308714 3310030 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ajs:Ajs_3340 phage integrase family protein gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3168 Alide2_3169 Alide2_3169 Alide2_3169 3310130 3310711 + hypothetical protein KEGG: eba:ebA218 hypothetical protein gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3169 Alide2_3170 Alide2_3170 Alide2_3170 3310864 3311067 + hypothetical protein KEGG: vap:Vapar_3801 hypothetical protein gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3170 Alide2_3171 Alide2_3171 Alide2_3171 3311068 3311418 + hypothetical protein KEGG: hsm:HSM_1673 hypothetical protein gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3171 Alide2_3172 Alide2_3172 Alide2_3172 3311420 3312136 + hypothetical protein KEGG: ajs:Ajs_1730 hypothetical protein gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3172 Alide2_3173 Alide2_3173 Alide2_3173 3312251 3313054 + hypothetical protein KEGG: vap:Vapar_3798 hypothetical protein gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3173 Alide2_3174 Alide2_3174 Alide2_3174 3313136 3313405 + hypothetical protein KEGG: vap:Vapar_3797 hypothetical protein gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3174 Alide2_3175 Alide2_3175 Alide2_3175 3313390 3313608 + hypothetical protein gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3175 Alide2_3176 Alide2_3176 Alide2_3176 3313605 3313823 + hypothetical protein gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3176 Alide2_3177 Alide2_3177 Alide2_3177 3313807 3314055 + hypothetical protein gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3177 Alide2_3178 Alide2_3178 Alide2_3178 3314045 3314311 + hypothetical protein KEGG: ctt:CtCNB1_2998 hypothetical protein gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3178 Alide2_3179 Alide2_3179 Alide2_3179 3314868 3315632 - UBA/THIF-type NAD/FAD binding protein PFAM: UBA/THIF-type NAD/FAD binding fold~KEGG: aav:Aave_3403 UBA/ThiF-type NAD/FAD binding protein gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3179 Alide2_3180 Alide2_3180 Alide2_3180 3315641 3316429 - tol-pal system protein YbgF TIGRFAM: Tol-Pal system%2C YbgF~KEGG: ajs:Ajs_1725 TPR repeat-containing protein gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3180 Alide2_3181 Alide2_3181 Alide2_3181 3316429 3316971 - peptidoglycan-associated lipoprotein KEGG: dia:Dtpsy_1980 peptidoglycan-associated lipoprotein~TIGRFAM: Peptidoglycan-associated lipoprotein~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3181 Alide2_3182 Alide2_3182 Alide2_3182 3317015 3318337 - Tol-Pal system beta propeller repeat protein TolB KEGG: dia:Dtpsy_1981 translocation protein TolB~TIGRFAM: Tol-Pal system beta propeller repeat-containing protein%2C TolB~PFAM: TolB%2C N-terminal%3B WD40-like Beta Propeller gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3182 Alide2_3183 Alide2_3183 Alide2_3183 3318471 3320252 + lipid A ABC exporter%2C fused ATPase and inner membrane subunits MsbA SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: ABC transporter%2C lipid A export%2C MsbA~KEGG: dia:Dtpsy_1982 lipid A ABC exporter%2C fused ATPase and inner membrane subunits MsbA~PFAM: ABC transporter%2C transmembrane domain%3B ABC transporter-like gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3183 Alide2_3184 Alide2_3184 Alide2_3184 3320315 3322057 - Biotin carboxylase PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Biotin carboxylase%2C C-terminal%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal%3B Biotin/lipoyl attachment~KEGG: dac:Daci_5726 carbamoyl-phosphate synthase subunit L~SMART: Biotin carboxylase%2C C-terminal gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3184 Alide2_3185 Alide2_3185 Alide2_3185 3322051 3323652 - urea amidolyase related protein SMART: Allophanate hydrolase subunit 2%3B Allophanate hydrolase subunit 1~TIGRFAM: Allophanate hydrolase subunit 2%3B Conserved hypothetical protein CHP00370~KEGG: reu:Reut_A2450 allophanate hydrolase subunit 2~PFAM: Allophanate hydrolase subunit 2%3B Allophanate hydrolase subunit 1 gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3185 Alide2_3186 Alide2_3186 Alide2_3186 3323660 3324472 - protein of unknown function DUF1445 PFAM: Protein of unknown function DUF1445~KEGG: reh:H16_B1759 hypothetical protein gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3186 Alide2_3187 Alide2_3187 Alide2_3187 3324495 3325256 - LamB/YcsF family protein PFAM: Uncharacterised protein family UPF0271%2C LamB/YcsF~KEGG: aav:Aave_3513 LamB/YcsF family protein gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3187 Alide2_3188 Alide2_3188 Alide2_3188 3325284 3326531 - General substrate transporter PFAM: General substrate transporter~KEGG: reh:H16_B1760 major facilitator superfamily transporter AAHS family protein gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3188 Alide2_3189 Alide2_3189 Alide2_3189 3326795 3327472 + transcriptional regulator%2C GntR family KEGG: aav:Aave_3515 GntR family transcriptional regulator~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3189 Alide2_3190 Alide2_3190 Alide2_3190 3327476 3328693 - hypothetical protein KEGG: app:CAP2UW1_0424 hypothetical protein gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3190 Alide2_3191 Alide2_3191 Alide2_3191 3328725 3328970 - hypothetical protein gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3191 Alide2_3192 Alide2_3192 Alide2_3192 3329165 3329845 - Ankyrin PFAM: Ankyrin repeat~KEGG: dia:Dtpsy_1983 ankyrin gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3192 Alide2_3193 Alide2_3193 Alide2_3193 3329842 3330651 - hydrolase%2C TatD family KEGG: ajs:Ajs_1720 TatD family hydrolase~TIGRFAM: Deoxyribonuclease%2C TatD Mg-dependent%2C prokaryote~PFAM: Deoxyribonuclease%2C TatD-related gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3193 Alide2_3194 Alide2_3194 Alide2_3194 3330713 3331072 - type IV pilus assembly PilZ PFAM: Type IV pilus assembly PilZ~KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3194 Alide2_3195 Alide2_3195 Alide2_3195 3331089 3332084 - DNA-directed DNA polymerase KEGG: ajs:Ajs_1718 DNA-directed DNA polymerase gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3195 Alide2_3196 Alide2_3196 Alide2_3196 3332081 3332737 - Thymidylate kinase PFAM: Thymidylate kinase~TIGRFAM: Thymidylate kinase~HAMAP: Thymidylate kinase~KEGG: dia:Dtpsy_1987 thymidylate kinase gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3196 Alide2_3197 Alide2_3197 Alide2_3197 3332734 3333729 - aminodeoxychorismate lyase KEGG: ajs:Ajs_1716 aminodeoxychorismate lyase~TIGRFAM: Uncharacterised protein family UPF0755~PFAM: Uncharacterised protein family UPF0755 gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3197 Alide2_3198 Alide2_3198 Alide2_3198 3333776 3334717 + folate-binding protein YgfZ KEGG: ajs:Ajs_1715 glycine cleavage T protein (aminomethyl transferase)~TIGRFAM: Folate-binding%2C YgfZ~PFAM: Glycine cleavage T-protein%2C N-terminal%3B Glycine cleavage T-protein%2C C-terminal barrel gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3198 Alide2_3199 Alide2_3199 Alide2_3199 3334751 3335242 + CMP/dCMP deaminase zinc-binding protein PFAM: CMP/dCMP deaminase%2C zinc-binding~KEGG: dia:Dtpsy_2009 CMP/dCMP deaminase zinc-binding gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3199 Alide2_3200 Alide2_3200 Alide2_3200 3335235 3336428 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: dac:Daci_2202 major facilitator transporter gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3200 Alide2_3201 Alide2_3201 Alide2_3201 3336451 3337932 + integral membrane sensor signal transduction histidine kinase KEGG: dac:Daci_1205 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3201 Alide2_3202 Alide2_3202 Alide2_3202 3337929 3338573 + two component transcriptional regulator%2C LuxR family KEGG: dac:Daci_1204 two component LuxR family transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3202 Alide2_3203 Alide2_3203 Alide2_3203 3338598 3339179 + protein of unknown function DUF336 PFAM: Domain of unknown function DUF336~KEGG: dac:Daci_1203 hypothetical protein gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3203 Alide2_3204 Alide2_3204 Alide2_3204 3339183 3340043 - 4-hydroxybenzoyl-CoA thioesterase KEGG: dia:Dtpsy_1990 thioesterase superfamily protein~TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase~PFAM: Thioesterase superfamily%3B GCN5-related N-acetyltransferase (GNAT) domain gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3204 Alide2_3205 Alide2_3205 Alide2_3205 3340053 3341036 - alpha/beta hydrolase domain-containing protein KEGG: ajs:Ajs_1713 alpha/beta hydrolase domain-containing protein gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3205 Alide2_3206 Alide2_3206 Alide2_3206 3341049 3341924 - fumarylacetoacetate (FAA) hydrolase PFAM: Fumarylacetoacetase%2C C-terminal-like~KEGG: ajs:Ajs_1712 hydratase/decarboxylase gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3206 Alide2_3207 Alide2_3207 Alide2_3207 3342020 3342853 - putative signal transduction protein PFAM: Metal-dependent hydrolase HDOD~KEGG: ajs:Ajs_1708 putative signal transduction protein gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3207 Alide2_3208 Alide2_3208 Alide2_3208 3342909 3343619 - transcriptional regulator%2C IclR family KEGG: cti:pRALTA_0434 putative transcriptional regulator%2C IclR family~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3208 Alide2_3209 Alide2_3209 Alide2_3209 3343768 3344778 + amidohydrolase 2 PFAM: Amidohydrolase 2~KEGG: bam:Bamb_4804 amidohydrolase 2 gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3209 Alide2_3210 Alide2_3210 Alide2_3210 3344829 3345788 + extra-cytoplasmic solute receptor KEGG: rme:Rmet_4146 extra-cytoplasmic solute receptor gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3210 Alide2_3211 Alide2_3211 Alide2_3211 3345821 3346786 + hypothetical protein KEGG: aav:Aave_3937 hypothetical protein gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3211 Alide2_3212 Alide2_3212 Alide2_3212 3346789 3347991 + Formyl-CoA transferase KEGG: reu:Reut_B4958 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3212 Alide2_3213 Alide2_3213 Alide2_3213 3347988 3348839 + Citrate synthase PFAM: Citrate synthase-like~KEGG: rme:Rmet_4144 citrate synthase gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3213 Alide2_3214 Alide2_3214 Alide2_3214 3348930 3349937 - transcriptional regulator%2C LacI family KEGG: bbr:BB0548 LacI family regulatory protein~PFAM: HTH transcriptional regulator%2C LacI%3B Periplasmic binding protein/LacI transcriptional regulator~SMART: HTH transcriptional regulator%2C LacI gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3214 Alide2_3215 Alide2_3215 Alide2_3215 3350028 3351020 + hypothetical protein KEGG: bbr:BB0564 hypothetical protein gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3215 Alide2_3216 Alide2_3216 Alide2_3216 3351026 3352582 + o-succinylbenzoate--CoA ligase KEGG: bbr:BB0547 putative ligase~PFAM: AMP-dependent synthetase/ligase gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3216 Alide2_3217 Alide2_3217 Alide2_3217 3352609 3353409 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: rpd:RPD_4223 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3217 Alide2_3218 Alide2_3218 Alide2_3218 3353447 3354430 + hypothetical protein KEGG: reu:Reut_A0842 hypothetical protein gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3218 Alide2_3219 Alide2_3219 Alide2_3219 3354427 3355608 + acetyl-CoA acetyltransferase KEGG: bbr:BB0546 acetyl-CoA acetyltransferase gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3219 Alide2_3220 Alide2_3220 Alide2_3220 3355605 3356003 + protein of unknown function DUF35 PFAM: Domain of unknown function DUF35%2C OB-fold%2C C-terminal~KEGG: bbr:BB0545 hypothetical protein gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3220 Alide2_3221 Alide2_3221 Alide2_3221 3356026 3357000 + hypothetical protein KEGG: bbr:BB0544 hypothetical protein gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3221 Alide2_3222 Alide2_3222 Alide2_3222 3357016 3359400 - Tex-like protein KEGG: ajs:Ajs_1707 RNA-binding S1 domain-containing protein~PFAM: Tex-like protein%2C N-terminal%3B Ribosomal protein S1%2C RNA-binding domain~SMART: Resolvase%2C RNase H-like fold%3B RNA-binding domain%2C S1 gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3222 Alide2_3223 Alide2_3223 Alide2_3223 3359493 3359897 + hypothetical protein KEGG: dia:Dtpsy_1998 hypothetical protein gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3223 Alide2_3224 Alide2_3224 Alide2_3224 3359898 3360944 + protein of unknown function DUF72 PFAM: Protein of unknown function DUF72~KEGG: dia:Dtpsy_1999 protein of unknown function DUF72 gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3224 Alide2_3225 Alide2_3225 Alide2_3225 3360993 3361514 - OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3225 Alide2_3226 Alide2_3226 Alide2_3226 3361577 3362170 + ChaC family protein PFAM: ChaC-like protein~KEGG: dia:Dtpsy_1879 ChaC family protein gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3226 Alide2_3227 Alide2_3227 Alide2_3227 3362187 3362840 + pyridoxamine 5'-phosphate oxidase TIGRFAM: Pyridoxamine 5'-phosphate oxidase~KEGG: dia:Dtpsy_1881 pyridoxamine 5'-phosphate oxidase~PFAM: Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain%3B Pyridoxine 5'-phosphate oxidase%2C dimerisation%2C C-terminal gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3227 Alide2_3228 Alide2_3228 Alide2_3228 3362841 3363779 - Auxin Efflux Carrier PFAM: Auxin efflux carrier~KEGG: dia:Dtpsy_1882 auxin efflux carrier gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3228 Alide2_3229 Alide2_3229 Alide2_3229 3363911 3365131 - chromate transporter%2C chromate ion transporter (CHR) family KEGG: ajs:Ajs_2035 chromate transporter~TIGRFAM: Chromate transporter%2C long chain~PFAM: Chromate transporter gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3229 Alide2_3230 Alide2_3230 Alide2_3230 3365183 3366055 - hypothetical protein KEGG: ajs:Ajs_2034 hypothetical protein gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3230 Alide2_3231 Alide2_3231 Alide2_3231 3366558 3368609 - TonB-dependent receptor PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug~KEGG: dia:Dtpsy_1842 TonB-dependent receptor gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3231 Alide2_3232 Alide2_3232 Alide2_3232 3369190 3369738 - peptide methionine sulfoxide reductase TIGRFAM: Peptide methionine sulphoxide reductase MsrA~KEGG: ajs:Ajs_2030 peptide methionine sulfoxide reductase~PFAM: Peptide methionine sulphoxide reductase MsrA gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3232 Alide2_3233 Alide2_3233 Alide2_3233 3369887 3370549 + transcriptional regulator%2C TetR family PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: ajs:Ajs_2029 TetR family transcriptional regulator gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3233 Alide2_3234 Alide2_3234 Alide2_3234 3370600 3371310 + Protein-L-isoaspartate(D-aspartate) O-methyltransferase KEGG: dia:Dtpsy_1837 protein-L-isoaspartate(D-aspartate) O-methyltransferase~PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3234 Alide2_3235 Alide2_3235 Alide2_3235 3371329 3371667 + Rhodanese-like protein KEGG: dia:Dtpsy_1836 rhodanese domain protein~PFAM: Rhodanese-like~SMART: Rhodanese-like gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3235 Alide2_3236 Alide2_3236 Alide2_3236 3371684 3373030 + type I secretion outer membrane protein%2C TolC family KEGG: dia:Dtpsy_1835 type I secretion outer membrane protein%2C TolC family~TIGRFAM: Type I secretion outer membrane protein%2C TolC~PFAM: Outer membrane efflux protein gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3236 Alide2_3237 Alide2_3237 Alide2_3237 3374692 3375762 - plasmid recombination protein PFAM: Plasmid recombination enzyme~KEGG: bvi:Bcep1808_2267 plasmid recombination enzyme gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3237 Alide2_3238 Alide2_3238 Alide2_3238 3376628 3377914 - hypothetical protein KEGG: mmb:Mmol_0218 hypothetical protein gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3238 Alide2_3239 Alide2_3239 Alide2_3239 3378404 3379261 - protein of unknown function DUF6 transmembrane KEGG: axy:AXYL_03456 hypothetical protein~manually curated~PFAM: Drug/metabolite transporter gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3239 Alide2_3240 Alide2_3240 Alide2_3240 3379502 3380005 - flavodoxin/nitric oxide synthase PFAM: Flavodoxin/nitric oxide synthase~KEGG: dia:Dtpsy_2016 NAD(P)H dehydrogenase (quinone) gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3240 Alide2_3241 Alide2_3241 Alide2_3241 3380038 3381939 - acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain~KEGG: dia:Dtpsy_2017 acyl-CoA dehydrogenase domain protein gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3241 Alide2_3242 Alide2_3242 Alide2_3242 3382371 3383171 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: ctt:CtCNB1_1867 amino acid ABC transporter%2C permease protein PEB1~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3242 Alide2_3243 Alide2_3243 Alide2_3243 3383168 3383830 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: dac:Daci_4388 polar amino acid ABC transporter inner membrane protein~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3243 Alide2_3244 Alide2_3244 Alide2_3244 3383834 3384736 - ABC-type transporter%2C periplasmic subunit family 3 KEGG: ctt:CtCNB1_1865 glutamate-binding protein precursor~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3244 Alide2_3245 Alide2_3245 Alide2_3245 3384964 3386133 - acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: dia:Dtpsy_2019 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3245 Alide2_3246 Alide2_3246 Alide2_3246 3386168 3388267 - 3-hydroxybutyryl-CoA epimerase KEGG: ajs:Ajs_1684 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase~PFAM: 3-hydroxyacyl-CoA dehydrogenase%2C NAD binding%3B 3-hydroxyacyl-CoA dehydrogenase%2C C-terminal%3B Crotonase%2C core gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3246 Alide2_3247 Alide2_3247 Alide2_3247 3388462 3389157 - ABC transporter related protein KEGG: dia:Dtpsy_2021 ABC transporter related~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3247 Alide2_3248 Alide2_3248 Alide2_3248 3389157 3389945 - Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_2022 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3248 Alide2_3249 Alide2_3249 Alide2_3249 3389942 3391276 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dia:Dtpsy_2023 inner-membrane translocator gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3249 Alide2_3250 Alide2_3250 Alide2_3250 3391281 3392234 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dia:Dtpsy_2024 inner-membrane translocator gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3250 Alide2_3251 Alide2_3251 Alide2_3251 3392308 3393543 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dia:Dtpsy_2025 extracellular ligand-binding receptor gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3251 Alide2_3252 Alide2_3252 Alide2_3252 3393684 3395321 - Long-chain-fatty-acid--CoA ligase KEGG: dia:Dtpsy_2026 long-chain-fatty-acid--CoA ligase~PFAM: AMP-dependent synthetase/ligase gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3252 Alide2_3253 Alide2_3253 Alide2_3253 3395464 3396951 + UPF0061 protein ydiU KEGG: ajs:Ajs_1677 hypothetical protein~HAMAP: Uncharacterised protein family UPF0061~PFAM: Uncharacterised protein family UPF0061 gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3253 Alide2_3254 Alide2_3254 Alide2_3254 3396948 3397361 + methionine-R-sulfoxide reductase TIGRFAM: Methionine sulphoxide reductase B~KEGG: dia:Dtpsy_2028 methionine-R-sulfoxide reductase~PFAM: Methionine sulphoxide reductase B gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3254 Alide2_3255 Alide2_3255 Alide2_3255 3397358 3397915 + intracellular septation protein A KEGG: ajs:Ajs_1675 intracellular septation protein A~TIGRFAM: Intracellular septation protein A~PFAM: Intracellular septation protein A gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3255 Alide2_3256 Alide2_3256 Alide2_3256 3397912 3398190 + BolA family protein PFAM: BolA protein~KEGG: dia:Dtpsy_2030 BolA family protein gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3256 Alide2_3257 Alide2_3257 Alide2_3257 3398257 3399042 + PpiC-type peptidyl-prolyl cis-trans isomerase PFAM: Peptidyl-prolyl cis-trans isomerase%2C PpiC-type~KEGG: dia:Dtpsy_2031 PpiC-type peptidyl-prolyl cis-trans isomerase gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3257 Alide2_3258 Alide2_3258 Alide2_3258 3399248 3399559 + protein of unknown function DUF1049 PFAM: Protein of unknown function DUF1049~KEGG: dia:Dtpsy_1389 hypothetical protein gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3258 Alide2_3259 Alide2_3259 Alide2_3259 3399549 3400706 + tetratricopeptide repeat protein KEGG: ajs:Ajs_2472 tetratricopeptide repeat protein gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3259 Alide2_3260 Alide2_3260 Alide2_3260 3400706 3401026 + hypothetical protein KEGG: ajs:Ajs_2473 hypothetical protein gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3260 Alide2_3261 Alide2_3261 Alide2_3261 3401115 3404075 + NADH dehydrogenase (quinone) KEGG: dia:Dtpsy_1386 putative monovalent cation/H+ antiporter subunit A~PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%3B Na+/H+ antiporter MnhB subunit-related protein gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3261 Alide2_3262 Alide2_3262 Alide2_3262 3404076 3404441 + NADH-ubiquinone oxidoreductase chain 4L PFAM: NADH-ubiquinone oxidoreductase chain 4L/K~KEGG: dia:Dtpsy_1385 putative monovalent cation/H+ antiporter subunit C gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3262 Alide2_3263 Alide2_3263 Alide2_3263 3404503 3406215 + NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH:ubiquinone/plastoquinone oxidoreductase~KEGG: ajs:Ajs_2476 putative monovalent cation/H+ antiporter subunit D gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3263 Alide2_3264 Alide2_3264 Alide2_3264 3406212 3406703 + cation antiporter PFAM: cation antiporter~KEGG: dia:Dtpsy_1383 putative monovalent cation/H+ antiporter subunit E gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3264 Alide2_3265 Alide2_3265 Alide2_3265 3406700 3406981 + multiple resistance and pH regulation protein F PFAM: Multiple resistance and pH regulation protein F~KEGG: dia:Dtpsy_1382 multiple resistance and pH regulation protein F gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3265 Alide2_3266 Alide2_3266 Alide2_3266 3406978 3407349 + Na+/H+ antiporter subunit PFAM: Na+/H+ antiporter subunit~KEGG: dia:Dtpsy_1381 Na+/H+ antiporter subunit gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3266 Alide2_3267 Alide2_3267 Alide2_3267 3407352 3409127 + peptidase M14 carboxypeptidase A PFAM: Peptidase M14%2C carboxypeptidase A~KEGG: dia:Dtpsy_1379 hypothetical protein gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3267 Alide2_3268 Alide2_3268 Alide2_3268 3409151 3409546 + CrcB protein KEGG: dia:Dtpsy_1374 camphor resistance protein CrcB~TIGRFAM: Camphor resistance CrcB protein~PFAM: Camphor resistance CrcB protein gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3268 Alide2_3269 Alide2_3269 Alide2_3269 3409676 3410539 + Conserved hypothetical protein CHP00730 KEGG: ajs:Ajs_2487 hypothetical protein~TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG~PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3269 Alide2_3270 Alide2_3270 Alide2_3270 3410554 3411717 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: dia:Dtpsy_1372 major facilitator superfamily MFS_1 gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3270 Alide2_3271 Alide2_3271 Alide2_3271 3411714 3413312 - RmuC-domain protein PFAM: DNA recombination RmuC~KEGG: azo:azo2787 putative RumC-like protein gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3271 Alide2_3272 Alide2_3272 Alide2_3272 3413386 3414366 - Glyoxylate reductase KEGG: dia:Dtpsy_1370 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3272 Alide2_3273 Alide2_3273 Alide2_3273 3414383 3415795 - putative transmembrane protein KEGG: ajs:Ajs_2491 putative transmembrane protein gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3273 Alide2_3274 Alide2_3274 Alide2_3274 3415843 3417042 - nicotinate phosphoribosyltransferase KEGG: dia:Dtpsy_1368 nicotinate phosphoribosyltransferase~TIGRFAM: Nicotinate phosphoribosyltransferase~PFAM: Nicotinate phosphoribosyltransferase-like gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3274 Alide2_3275 Alide2_3275 Alide2_3275 3417192 3417665 - thioesterase superfamily protein PFAM: Thioesterase superfamily~KEGG: dia:Dtpsy_1367 thioesterase superfamily protein gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3275 Alide2_3276 Alide2_3276 Alide2_3276 3417923 3418477 + phasin family protein KEGG: dia:Dtpsy_1366 phasin family protein~TIGRFAM: Phasin%2C subfamily 1~PFAM: Phasin gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3276 Alide2_3277 Alide2_3277 Alide2_3277 3418761 3419810 + extracellular solute-binding protein family 1 PFAM: Bacterial extracellular solute-binding%2C family 1~KEGG: ajs:Ajs_1607 extracellular solute-binding protein gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3277 Alide2_3278 Alide2_3278 Alide2_3278 3419925 3420683 + 3-hydroxy-2-methylbutyryl-CoA dehydrogenase KEGG: dia:Dtpsy_2108 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3278 Alide2_3279 Alide2_3279 Alide2_3279 3421209 3422588 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ajs:Ajs_1604 phage integrase family protein gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3279 Alide2_3280 Alide2_3280 Alide2_3280 3422919 3423464 - hypothetical protein manually curated~KEGG: ajs:Ajs_1603 hypothetical protein gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3280 Alide2_3281 Alide2_3281 Alide2_3281 3423461 3423907 - hypothetical protein manually curated~KEGG: ajs:Ajs_1602 hypothetical protein gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3281 Alide2_3282 Alide2_3282 Alide2_3282 3423915 3424190 - hypothetical protein KEGG: ajs:Ajs_1601 hypothetical protein gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3282 Alide2_3283 Alide2_3283 Alide2_3283 3424187 3425218 - PRTRC system protein D TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein D~KEGG: ajs:Ajs_1600 hypothetical protein gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3283 Alide2_3284 Alide2_3284 Alide2_3284 3425577 3426215 + hypothetical protein gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3284 Alide2_3285 Alide2_3285 Alide2_3285 3426474 3427574 + hypothetical protein KEGG: ajs:Ajs_1599 hypothetical protein gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3285 Alide2_3286 Alide2_3286 Alide2_3286 3427579 3427932 - histone family protein nucleoid-structuring protein H-NS KEGG: ajs:Ajs_1598 nucleoid protein H-NS~PFAM: Histone-like nucleoid-structuring protein H-NS~SMART: Histone-like nucleoid-structuring protein H-NS gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3286 Alide2_3287 Alide2_3287 Alide2_3287 3428029 3428247 - hypothetical protein gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3287 Alide2_3288 Alide2_3288 Alide2_3288 3428244 3429089 - PRTRC system ThiF family protein KEGG: ajs:Ajs_1597 UBA/ThiF-type NAD/FAD binding protein~TIGRFAM: ParB-related%2C ThiF-related cassette%2C ThiF~PFAM: UBA/THIF-type NAD/FAD binding fold gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3288 Alide2_3289 Alide2_3289 Alide2_3289 3429143 3429856 - PRTRC system protein A KEGG: ajs:Ajs_1596 hypothetical protein~TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein A~PFAM: Domain of unknown function DUF2016 gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3289 Alide2_3290 Alide2_3290 Alide2_3290 3429856 3430596 - PRTRC system protein B TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein B~KEGG: ajs:Ajs_1595 hypothetical protein gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3290 Alide2_3291 Alide2_3291 Alide2_3291 3430625 3431668 - PRTRC system protein F TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein F~KEGG: ajs:Ajs_1594 hypothetical protein gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3291 Alide2_3292 Alide2_3292 Alide2_3292 3431680 3432123 - ParB-related%2CThiF-related cassette%2C protein C TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein C~KEGG: ajs:Ajs_1593 hypothetical protein gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3292 Alide2_3293 Alide2_3293 Alide2_3293 3432220 3432702 - PRTRC system protein E TIGRFAM: ParB-related%2C ThiF-related cassette%2C protein E~KEGG: ajs:Ajs_1592 hypothetical protein gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3293 Alide2_3294 Alide2_3294 Alide2_3294 3432812 3434575 - PRTRC system ParB family protein TIGRFAM: ParB-related%2C ThiF-related cassette%2C ParB%3B ParB-like partition protein~PFAM: ParB-like nuclease~KEGG: ajs:Ajs_1591 ParB family protein~SMART: ParB-like nuclease gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3294 Alide2_3295 Alide2_3295 Alide2_3295 3434660 3435160 - hypothetical protein KEGG: ajs:Ajs_1590 hypothetical protein gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3295 Alide2_3296 Alide2_3296 Alide2_3296 3435384 3435788 + histone family protein DNA-binding protein KEGG: dia:Dtpsy_2126 histone family protein DNA-binding protein~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3296 Alide2_3297 Alide2_3297 Alide2_3297 3435861 3436181 + hypothetical protein KEGG: dia:Dtpsy_2127 hypothetical protein gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3297 Alide2_3298 Alide2_3298 Alide2_3298 3436225 3437070 - putative EA31 protein KEGG: ajs:Ajs_1585 putative EA31 gene protein%2C phage lambda gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3298 Alide2_3299 Alide2_3299 Alide2_3299 3437072 3438694 - putative EA59 protein KEGG: ajs:Ajs_1584 putative EA59 gene protein%2C phage lambda gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3299 Alide2_3300 Alide2_3300 Alide2_3300 3438824 3439669 - hypothetical protein manually curated~KEGG: dia:Dtpsy_2166 hypothetical protein gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3300 Alide2_3301 Alide2_3301 Alide2_3301 3439666 3440949 - hypothetical protein KEGG: rfr:Rfer_1072 hypothetical protein gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3301 Alide2_3302 Alide2_3302 Alide2_3302 3440986 3441849 - Gp37Gp68 family protein PFAM: Phage Gp37Gp68~KEGG: dia:Dtpsy_2170 Gp37Gp68 family protein gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3302 Alide2_3303 Alide2_3303 Alide2_3303 3441961 3442905 - Domain of unknown function DUF1814 PFAM: Protein of unknown function DUF1814~KEGG: dia:Dtpsy_2171 hypothetical protein gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3303 Alide2_3304 Alide2_3304 Alide2_3304 3442898 3443509 - hypothetical protein KEGG: vei:Veis_2691 hypothetical protein gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3304 Alide2_3305 Alide2_3305 Alide2_3305 3444024 3444356 + hypothetical protein KEGG: dia:Dtpsy_2173 hypothetical protein gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3305 Alide2_3306 Alide2_3306 Alide2_3306 3444664 3445338 + hypothetical protein KEGG: dia:Dtpsy_2174 hypothetical protein gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3306 Alide2_3307 Alide2_3307 Alide2_3307 3445411 3446823 - hypothetical protein KEGG: dia:Dtpsy_2175 hypothetical protein gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3307 Alide2_3308 Alide2_3308 Alide2_3308 3446838 3447749 - hypothetical protein KEGG: dia:Dtpsy_2176 hypothetical protein gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3308 Alide2_3309 Alide2_3309 Alide2_3309 3448201 3453243 + DEAD-like helicase SMART: DEAD-like helicase%2C N-terminal~KEGG: ajs:Ajs_1578 helicase domain-containing protein gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3309 Alide2_3310 Alide2_3310 Alide2_3310 3453809 3454327 + hypothetical protein manually curated~KEGG: ajs:Ajs_1576 hypothetical protein gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3310 Alide2_3311 Alide2_3311 Alide2_3311 3454298 3454528 - hypothetical protein KEGG: ajs:Ajs_1575 hypothetical protein gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3311 Alide2_3312 Alide2_3312 Alide2_3312 3454655 3455167 + hypothetical protein KEGG: ajs:Ajs_1574 hypothetical protein gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3312 Alide2_3313 Alide2_3313 Alide2_3313 3455274 3455486 - hypothetical protein KEGG: ajs:Ajs_1573 hypothetical protein gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3313 Alide2_3314 Alide2_3314 Alide2_3314 3456028 3456336 + hypothetical protein KEGG: ajs:Ajs_1572 hypothetical protein gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3314 Alide2_3315 Alide2_3315 Alide2_3315 3456389 3458857 - putative DNA repair ATPase KEGG: ajs:Ajs_1571 putative DNA repair ATPase gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3315 Alide2_3316 Alide2_3316 Alide2_3316 3459072 3459473 + hypothetical protein KEGG: ajs:Ajs_1570 hypothetical protein gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3316 Alide2_3317 Alide2_3317 Alide2_3317 3459470 3460435 + Domain of unknown function DUF1814 PFAM: Protein of unknown function DUF1814~KEGG: ajs:Ajs_1569 hypothetical protein gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3317 Alide2_3318 Alide2_3318 Alide2_3318 3460486 3461766 - metallophosphoesterase PFAM: Metallo-dependent phosphatase~KEGG: ajs:Ajs_1567 metallophosphoesterase gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3318 Alide2_3319 Alide2_3319 Alide2_3319 3461778 3463061 - hypothetical protein KEGG: ajs:Ajs_1566 hypothetical protein gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3319 Alide2_3320 Alide2_3320 Alide2_3320 3463353 3464306 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ajs:Ajs_1565 phage integrase family protein gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3320 Alide2_3321 Alide2_3321 Alide2_3321 3464312 3465556 + protein of unknown function DUF1173 PFAM: Protein of unknown function DUF1173~KEGG: ajs:Ajs_1564 hypothetical protein gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3321 Alide2_3322 Alide2_3322 Alide2_3322 3465615 3465854 - Prophage CP4-57 regulatory PFAM: Prophage CP4-57 regulatory~KEGG: ajs:Ajs_1562 phage transcriptional regulator%2C AlpA gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3322 Alide2_3323 Alide2_3323 Alide2_3323 3466282 3467067 - hypothetical protein KEGG: ajs:Ajs_1561 hypothetical protein gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3323 Alide2_3324 Alide2_3324 Alide2_3324 3467558 3468139 + hypothetical protein KEGG: ajs:Ajs_1560 hypothetical protein gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3324 Alide2_3325 Alide2_3325 Alide2_3325 3468173 3468394 + hypothetical protein KEGG: ajs:Ajs_1559 hypothetical protein gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3325 Alide2_3326 Alide2_3326 Alide2_3326 3468391 3468738 + hypothetical protein KEGG: ajs:Ajs_1558 hypothetical protein gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3326 Alide2_3327 Alide2_3327 Alide2_3327 3468805 3470443 + pseudogene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3327 Alide2_3328 Alide2_3328 Alide2_3328 3470430 3471434 + P4 alpha zinc-binding domain protein KEGG: ajs:Ajs_1556 phage P4 alpha zinc-binding domain-containing protein~PFAM: Phage P4 alpha%2C zinc-binding~SMART: Phage P4 alpha%2C zinc-binding gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3328 Alide2_3329 Alide2_3329 Alide2_3329 3471719 3472783 + hypothetical protein KEGG: ajs:Ajs_1554 hypothetical protein gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3329 Alide2_3330 Alide2_3330 Alide2_3330 3472865 3473434 - Peptidase S24/S26A/S26B%2C conserved region PFAM: Peptidase S24/S26A/S26B%2C conserved region~KEGG: ajs:Ajs_1553 putative phage repressor gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3330 Alide2_3331 Alide2_3331 Alide2_3331 3473876 3474190 + hypothetical protein KEGG: ajs:Ajs_1552 hypothetical protein gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3331 Alide2_3332 Alide2_3332 Alide2_3332 3474191 3474853 + hypothetical protein KEGG: ajs:Ajs_1551 hypothetical protein gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3332 Alide2_3333 Alide2_3333 Alide2_3333 3474907 3476700 + Relaxase PFAM: Uncharacterised protein family%2C helicase/relaxase%2C putative~KEGG: ajs:Ajs_1550 FHA domain-containing protein gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3333 Alide2_3334 Alide2_3334 Alide2_3334 3476702 3478603 + conjugative coupling factor TraD%2C SXT/TOL subfamily TIGRFAM: Conjugative coupling factor TraG/TraD~KEGG: ajs:Ajs_1549 hypothetical protein gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3334 Alide2_3335 Alide2_3335 Alide2_3335 3478600 3479223 + hypothetical protein KEGG: ajs:Ajs_1548 hypothetical protein gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3335 Alide2_3336 Alide2_3336 Alide2_3336 3479239 3479484 - helix-turn-helix domain protein manually curated~PFAM: Helix-turn-helix type 3~KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein~SMART: Helix-turn-helix type 3 gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3336 Alide2_3337 Alide2_3337 Alide2_3337 3479664 3479996 + hypothetical protein manually curated~KEGG: ajs:Ajs_1546 hypothetical protein gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3337 Alide2_3338 Alide2_3338 Alide2_3338 3480175 3480672 + hypothetical protein KEGG: ajs:Ajs_1545 hypothetical protein gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3338 Alide2_3339 Alide2_3339 Alide2_3339 3480812 3481339 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: ajs:Ajs_1544 lytic transglycosylase%2C catalytic gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3339 Alide2_3340 Alide2_3340 Alide2_3340 3481856 3482218 + hypothetical protein KEGG: ajs:Ajs_1542 hypothetical protein gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3340 Alide2_3341 Alide2_3341 Alide2_3341 3482250 3482549 + type IV conjugative transfer system protein TraL KEGG: ajs:Ajs_1541 TraL family protein~TIGRFAM: Type IV conjugative transfer system%2C protein TraL~PFAM: Type IV conjugative transfer system%2C protein TraL gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3341 Alide2_3342 Alide2_3342 Alide2_3342 3482564 3483130 + type IV conjugative transfer system protein TraE TIGRFAM: Pilus assembly TraE~KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3342 Alide2_3343 Alide2_3343 Alide2_3343 3483117 3484124 + hypothetical protein KEGG: ajs:Ajs_1539 hypothetical protein gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3343 Alide2_3344 Alide2_3344 Alide2_3344 3484121 3485557 + TraB pilus assembly family protein KEGG: ajs:Ajs_1538 TraB pilus assembly family protein gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3344 Alide2_3345 Alide2_3345 Alide2_3345 3485541 3486380 + disulfide bond isomerase%2C DsbC/G PFAM: Disulphide bond isomerase%2C DsbC/G%2C N-terminal~KEGG: ajs:Ajs_1537 periplasmic thiol:disulfide interchange protein gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3345 Alide2_3346 Alide2_3346 Alide2_3346 3486377 3487042 + type IV conjugative transfer system protein TraV KEGG: ajs:Ajs_1536 hypothetical protein~TIGRFAM: Type IV secretion system%2C TraV~PFAM: Type IV secretion system%2C TraV gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3346 Alide2_3347 Alide2_3347 Alide2_3347 3487050 3489632 + type-IV secretion system protein TraC TIGRFAM: Type-IV secretion system protein TraC~KEGG: ajs:Ajs_1535 hypothetical protein gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3347 Alide2_3348 Alide2_3348 Alide2_3348 3489629 3489985 + hypothetical protein KEGG: ajs:Ajs_1534 hypothetical protein gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3348 Alide2_3349 Alide2_3349 Alide2_3349 3489982 3490575 + conjugative transfer signal peptidase TraF KEGG: ajs:Ajs_1533 hypothetical protein~TIGRFAM: Peptidase S26C%2C conjugative transfer signal peptidase TraF~PFAM: Peptidase S26%2C conserved region gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3349 Alide2_3350 Alide2_3350 Alide2_3350 3490586 3490981 + hypothetical protein KEGG: ajs:Ajs_1532 hypothetical protein gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3350 Alide2_3351 Alide2_3351 Alide2_3351 3490978 3491613 + type-F conjugative transfer system protein TraW TIGRFAM: Type-F conjugative transfer system protein TraW~KEGG: ajs:Ajs_1531 membrane lipoprotein lipid attachment site gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3351 Alide2_3352 Alide2_3352 Alide2_3352 3491610 3492635 + TraU family protein PFAM: TraU~KEGG: ajs:Ajs_1530 TraU family protein gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3352 Alide2_3353 Alide2_3353 Alide2_3353 3492622 3493386 + type-F conjugative transfer system pilin assembly protein TrbC KEGG: ajs:Ajs_1529 hypothetical protein~TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC%2C subgroup~PFAM: Type-F conjugative transfer system pilin assembly protein TrbC gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3353 Alide2_3354 Alide2_3354 Alide2_3354 3493396 3495813 + conjugal transfer mating pair stabilization protein TraN KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3354 Alide2_3355 Alide2_3355 Alide2_3355 3495810 3496199 + hypothetical protein KEGG: ajs:Ajs_1527 hypothetical protein gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3355 Alide2_3356 Alide2_3356 Alide2_3356 3496210 3497085 + TraF-like protein KEGG: ajs:Ajs_1526 hypothetical protein~TIGRFAM: Type IV conjugative transfer system protein TraF~PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3356 Alide2_3357 Alide2_3357 Alide2_3357 3497095 3498543 + TraH family protein PFAM: Type IV conjugative transfer system protein TraH~KEGG: ajs:Ajs_1525 TraH family protein gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3357 Alide2_3358 Alide2_3358 Alide2_3358 3498565 3501336 + TraG domain-containing protein PFAM: TraG-like%2C N-terminal~KEGG: ajs:Ajs_1524 TraG domain-containing protein gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3358 Alide2_3359 Alide2_3359 Alide2_3359 3501342 3501692 - hypothetical protein KEGG: ajs:Ajs_1521 hypothetical protein gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3359 Alide2_3360 Alide2_3360 Alide2_3360 3501739 3502440 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ajs:Ajs_1565 phage integrase family protein gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3360 Alide2_3361 Alide2_3361 Alide2_3361 3502609 3503034 - transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: pol:Bpro_4722 IS4 family transposase gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3361 Alide2_3362 Alide2_3362 Alide2_3362 3503131 3503418 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_1490 hypothetical protein gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3362 Alide2_3363 Alide2_3363 Alide2_3363 3503536 3503805 + pseudogene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3363 Alide2_3364 Alide2_3364 Alide2_3364 3503948 3504076 + pseudogene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3364 Alide2_3365 Alide2_3365 Alide2_3365 3504073 3504933 + polyphosphate kinase 2 KEGG: ajs:Ajs_1514 hypothetical protein~TIGRFAM: Polyphosphate kinase 2%2C PA0141~PFAM: Polyphosphate kinase-2-related gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3365 Alide2_3366 Alide2_3366 Alide2_3366 3504953 3507406 + heavy metal translocating P-type ATPase PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Haloacid dehalogenase-like hydrolase~manually curated~KEGG: ajs:Ajs_1513 heavy metal translocating P-type ATPase~TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P type%2C cation/copper-transporter%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3366 Alide2_3367 Alide2_3367 Alide2_3367 3507498 3508778 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: ajs:Ajs_1512 major facilitator superfamily transporter gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3367 Alide2_3368 Alide2_3368 Alide2_3368 3508781 3509395 + LemA family protein PFAM: LemA~KEGG: ajs:Ajs_1511 LemA family protein gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3368 Alide2_3369 Alide2_3369 Alide2_3369 3509392 3510276 + protein of unknown function DUF477 PFAM: Protein of unknown function DUF477~KEGG: ajs:Ajs_1510 hypothetical protein gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3369 Alide2_3370 Alide2_3370 Alide2_3370 3510279 3510776 + protein of unknown function DUF477 PFAM: Protein of unknown function DUF477~KEGG: ajs:Ajs_1509 hypothetical protein gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3370 Alide2_3371 Alide2_3371 Alide2_3371 3510802 3512160 + beta-lactamase domain protein KEGG: ajs:Ajs_1508 beta-lactamase domain-containing protein~PFAM: Beta-lactamase-like%3B RNA-metabolising metallo-beta-lactamase~SMART: Beta-lactamase-like gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3371 Alide2_3372 Alide2_3372 Alide2_3372 3512157 3513692 + thymidine phosphorylase KEGG: ajs:Ajs_1507 thymidine phosphorylase~PFAM: Pyrimidine nucleoside phosphorylase%2C C-terminal%3B Glycosyl transferase%2C family 3~TIGRFAM: Thymidine phosphorylase%2C type 2~HAMAP: Thymidine phosphorylase%2C type 2~SMART: Pyrimidine nucleoside phosphorylase%2C C-terminal gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3372 Alide2_3373 Alide2_3373 Alide2_3373 3513689 3514588 + ribose-phosphate pyrophosphokinase KEGG: ajs:Ajs_1506 phosphoribosylpyrophosphate synthetase~TIGRFAM: Phosphoribosyl pyrophosphokinase gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3373 Alide2_3374 Alide2_3374 Alide2_3374 3514585 3515748 + peptidase S1 and S6 chymotrypsin/Hap KEGG: ajs:Ajs_1505 peptidase S1 and S6%2C chymotrypsin/Hap~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF~SMART: PDZ/DHR/GLGF gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3374 Alide2_3375 Alide2_3375 Alide2_3375 3515758 3516216 + Carbamate kinase KEGG: dba:Dbac_2177 carbamate kinase~PFAM: Aspartate/glutamate/uridylate kinase gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3375 Alide2_3376 Alide2_3376 Alide2_3376 3516331 3516975 + hypothetical protein KEGG: ajs:Ajs_1500 hypothetical protein gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3376 Alide2_3377 Alide2_3377 Alide2_3377 3517089 3518774 - mercuric reductase TIGRFAM: Mercury reductase%2C MerA~KEGG: mms:mma_1749 putative mercuric reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Heavy metal transport/detoxification protein%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3377 Alide2_3378 Alide2_3378 Alide2_3378 3518813 3518911 - pseudogene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3378 Alide2_3379 Alide2_3379 Alide2_3379 3518935 3519210 - mercuric transport protein periplasmic component KEGG: shn:Shewana3_4343 mercuric transport protein periplasmic component~TIGRFAM: Mercuric transport protein periplasmic component~PFAM: Heavy metal transport/detoxification protein gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3379 Alide2_3380 Alide2_3380 Alide2_3380 3519223 3519573 - Mercuric transport protein MerT PFAM: Mercuric transport protein MerT~KEGG: net:Neut_2570 putative mercuric transport protein gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3380 Alide2_3381 Alide2_3381 Alide2_3381 3519645 3520067 + transcriptional regulator%2C MerR family TIGRFAM: Hg(II)-responsive transcriptional regulator~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~KEGG: net:Neut_2571 putative transcriptional regulator MerR~SMART: HTH transcriptional regulator%2C MerR gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3381 Alide2_3382 Alide2_3382 Alide2_3382 3520341 3520610 - pseudogene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3382 Alide2_3383 Alide2_3383 Alide2_3383 3521840 3523102 - hypothetical protein KEGG: ajs:Ajs_1486 hypothetical protein gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3383 Alide2_3384 Alide2_3384 Alide2_3384 3523530 3523838 + Flagellar hook-basal body complex protein fliE PFAM: Flagellar hook-basal body complex protein FliE~manually curated~TIGRFAM: Flagellar hook-basal body complex protein FliE~KEGG: ajs:Ajs_1485 flagellar hook-basal body complex subunit FliE~HAMAP: Flagellar hook-basal body complex protein FliE gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3384 Alide2_3385 Alide2_3385 Alide2_3385 3523938 3524228 - hypothetical protein KEGG: dia:Dtpsy_2181 hypothetical protein gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3385 Alide2_3386 Alide2_3386 Alide2_3386 3524312 3524602 - pseudogene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3386 Alide2_3387 Alide2_3387 Alide2_3387 3524618 3527749 - heavy metal efflux pump%2C CzcA family KEGG: dia:Dtpsy_2183 heavy metal efflux pump%2C CzcA family~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3387 Alide2_3388 Alide2_3388 Alide2_3388 3527765 3528139 - pseudogene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3388 Alide2_3389 Alide2_3389 Alide2_3389 3528145 3528396 + pseudogene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3389 Alide2_3390 Alide2_3390 Alide2_3390 3528438 3528716 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: dia:Dtpsy_3180 transposase IS3/IS911 family protein gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3390 Alide2_3391 Alide2_3391 Alide2_3391 3528764 3529588 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: dia:Dtpsy_3179 integrase catalytic region gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3391 Alide2_3392 Alide2_3392 Alide2_3392 3529763 3530116 + hypothetical protein KEGG: dia:Dtpsy_2203 hypothetical protein gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3392 Alide2_3393 Alide2_3393 Alide2_3393 3530418 3530597 - pseudogene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3393 Alide2_3394 Alide2_3394 Alide2_3394 3530753 3531418 + Rhodanese-like protein KEGG: dia:Dtpsy_2204 transcriptional regulator%2C ArsR family~PFAM: Rhodanese-like%3B HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR%3B Rhodanese-like gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3394 Alide2_3395 Alide2_3395 Alide2_3395 3531424 3531996 + Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: dia:Dtpsy_2205 methyltransferase type 11 gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3395 Alide2_3396 Alide2_3396 Alide2_3396 3532019 3532375 + DsrE family protein PFAM: Sulphur relay%2C DsrE/F-like protein~KEGG: dia:Dtpsy_2206 DsrE family protein gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3396 Alide2_3397 Alide2_3397 Alide2_3397 3532401 3533060 + Methyltransferase type 11 KEGG: dia:Dtpsy_2207 methyltransferase type 11~manually curated~PFAM: Methyltransferase type 11 gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3397 Alide2_3398 Alide2_3398 Alide2_3398 3533128 3533316 - pseudogene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3398 Alide2_3399 Alide2_3399 Alide2_3399 3533957 3535258 + outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: dia:Dtpsy_2209 outer membrane efflux protein gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3399 Alide2_3400 Alide2_3400 Alide2_3400 3535262 3536863 + efflux transporter%2C RND family%2C MFP subunit KEGG: dia:Dtpsy_2210 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3400 Alide2_3401 Alide2_3401 Alide2_3401 3536874 3537215 + nitrogen regulatory protein P-II KEGG: dia:Dtpsy_2211 nitrogen regulatory protein P-II~PFAM: Nitrogen regulatory protein PII~SMART: Nitrogen regulatory protein PII gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3401 Alide2_3402 Alide2_3402 Alide2_3402 3537239 3540424 + heavy metal efflux pump%2C CzcA family KEGG: dia:Dtpsy_2212 heavy metal efflux pump%2C CzcA family~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3402 Alide2_3403 Alide2_3403 Alide2_3403 3540499 3543006 + heavy metal translocating P-type ATPase TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P-type%2C heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: dia:Dtpsy_2214 heavy metal translocating P-type ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Haloacid dehalogenase-like hydrolase gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3403 Alide2_3404 Alide2_3404 Alide2_3404 3543128 3543814 + two component heavy metal response transcriptional regulator%2C winged helix family TIGRFAM: Signal transduction response regulator%2C heavy metal response~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~KEGG: dia:Dtpsy_2215 two component heavy metal response transcriptional regulator%2C winged helix family~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3404 Alide2_3405 Alide2_3405 Alide2_3405 3543811 3545184 + heavy metal sensor signal transduction histidine kinase TIGRFAM: Signal transduction histidine kinase%2C heavy metal sensor~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain~KEGG: dia:Dtpsy_2216 heavy metal sensor signal transduction histidine kinase~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3405 Alide2_3406 Alide2_3406 Alide2_3406 3545378 3546424 - protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: dia:Dtpsy_2217 protein of unknown function DUF6 transmembrane gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3406 Alide2_3407 Alide2_3407 Alide2_3407 3546709 3547062 + hypothetical protein KEGG: dia:Dtpsy_2218 hypothetical protein gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3407 Alide2_3408 Alide2_3408 Alide2_3408 3547513 3547866 + hypothetical protein KEGG: dia:Dtpsy_2221 hypothetical protein gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3408 Alide2_3409 Alide2_3409 Alide2_3409 3547993 3549120 - ISRSO5-transposase protein KEGG: dia:Dtpsy_2222 ISRSO5-transposase protein gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3409 Alide2_3410 Alide2_3410 Alide2_3410 3549262 3549406 + pseudogene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3410 Alide2_3411 Alide2_3411 Alide2_3411 3550036 3551439 - glutamyl-tRNA synthetase TIGRFAM: Glutamyl-tRNA synthetase%2C class Ic%2C bacterial/mitochondrial~KEGG: dia:Dtpsy_2224 glutamyl-tRNA synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3411 Alide2_3412 Alide2_3412 Alide2_3412 3551436 3552650 - O-succinylhomoserine sulfhydrylase TIGRFAM: O-succinylhomoserine sulfhydrylase~KEGG: dac:Daci_4768 O-succinylhomoserine sulfhydrylase~PFAM: Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3412 Alide2_3413 Alide2_3413 Alide2_3413 3552779 3554287 - amidophosphoribosyltransferase TIGRFAM: Amidophosphoribosyl transferase~KEGG: dia:Dtpsy_2226 amidophosphoribosyltransferase~PFAM: Glutamine amidotransferase%2C class-II%3B Phosphoribosyltransferase gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3413 Alide2_3414 Alide2_3414 Alide2_3414 3554351 3554839 - Colicin V production protein PFAM: Colicin V production%2C CvpA%3B Protein of unknown function DUF2474~KEGG: dia:Dtpsy_2227 colicin V production protein gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3414 Alide2_3415 Alide2_3415 Alide2_3415 3554853 3555701 - Sporulation domain-containing protein PFAM: Sporulation-related domain~KEGG: dia:Dtpsy_2228 sporulation domain protein gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3415 Alide2_3416 Alide2_3416 Alide2_3416 3555711 3557063 - FolC bifunctional protein TIGRFAM: Folylpolyglutamate synthetase~KEGG: ajs:Ajs_2739 FolC bifunctional protein~PFAM: Mur ligase%2C central%3B Mur ligase%2C C-terminal gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3416 Alide2_3417 Alide2_3417 Alide2_3417 3557082 3557468 + ArsC family protein KEGG: dia:Dtpsy_2230 arsenate reductase and related~TIGRFAM: Transcriptional regulator Spx/MgsR~PFAM: Arsenate reductase-like gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3417 Alide2_3418 Alide2_3418 Alide2_3418 3557589 3558260 + 17 kDa surface antigen KEGG: dia:Dtpsy_2231 17 kDa surface antigen gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3418 Alide2_3419 Alide2_3419 Alide2_3419 3558321 3558638 + protein of unknown function DUF1255 PFAM: Protein of unknown function DUF1255~KEGG: dia:Dtpsy_2232 protein of unknown function DUF1255 gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3419 Alide2_3420 Alide2_3420 Alide2_3420 3558666 3560009 + Argininosuccinate synthase PFAM: Argininosuccinate synthase~TIGRFAM: Argininosuccinate synthase~HAMAP: Argininosuccinate synthase~KEGG: dia:Dtpsy_2233 argininosuccinate synthase gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3420 Alide2_3421 Alide2_3421 Alide2_3421 3560112 3562094 - GAF modulated sigma54 specific transcriptional regulator%2C Fis family KEGG: tmz:Tmz1t_3466 GAF modulated sigma54 specific transcriptional regulator%2C fis family~PFAM: RNA polymerase sigma factor 54%2C interaction%3B GAF%3B Helix-turn-helix%2C Fis-type~SMART: ATPase%2C AAA+ type%2C core gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3421 Alide2_3422 Alide2_3422 Alide2_3422 3562280 3562786 - Acetone carboxylase gamma subunit PFAM: Acetone carboxylase%2C gamma subunit-related~KEGG: eba:ebA4702 acetone carboxylase gamma subunit gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3422 Alide2_3423 Alide2_3423 Alide2_3423 3562811 3565135 - Hydantoinase B/oxoprolinase PFAM: Hydantoinase B/oxoprolinase~KEGG: tmz:Tmz1t_3470 hydantoinase B/oxoprolinase gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3423 Alide2_3424 Alide2_3424 Alide2_3424 3565147 3567291 - Hydantoinase/oxoprolinase PFAM: Hydantoinase/oxoprolinase%3B Hydantoinaseoxoprolinase%2C N-terminal~KEGG: reu:Reut_C6172 acetone carboxylase%2C beta subunit gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3424 Alide2_3425 Alide2_3425 Alide2_3425 3567671 3568390 - exsB protein KEGG: dia:Dtpsy_2234 ExsB protein~TIGRFAM: Queuosine synthesis~PFAM: Queuosine synthesis gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3425 Alide2_3426 Alide2_3426 Alide2_3426 3568387 3569058 - protein of unknown function DUF165 KEGG: dia:Dtpsy_2235 hypothetical protein~TIGRFAM: Protein of unknown function DUF165~PFAM: Protein of unknown function DUF165 gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3426 Alide2_3427 Alide2_3427 Alide2_3427 3569222 3569596 + SPW repeat protein PFAM: SPW repeat~KEGG: dac:Daci_4779 SPW repeat-containing protein gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3427 Alide2_3428 Alide2_3428 Alide2_3428 3569704 3570792 - UDP-N-acetylenolpyruvoylglucosamine reductase TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase~KEGG: dia:Dtpsy_2239 UDP-N-acetylenolpyruvoylglucosamine reductase~PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase%2C C-terminal%3B FAD linked oxidase%2C N-terminal gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3428 Alide2_3429 Alide2_3429 Alide2_3429 3570856 3571341 + protein of unknown function DUF520 PFAM: Protein of unknown function DUF520~KEGG: ajs:Ajs_2750 putative nucleotide-binding protein gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3429 Alide2_3430 Alide2_3430 Alide2_3430 3571352 3571999 + Peptidase A2A PFAM: Peptidase A2A%2C retrovirus RVP subgroup~KEGG: ajs:Ajs_2751 hypothetical protein gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3430 Alide2_3431 Alide2_3431 Alide2_3431 3572029 3573027 + putative metal dependent phosphohydrolase KEGG: dia:Dtpsy_2242 putative metal dependent phosphohydrolase gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3431 Alide2_3432 Alide2_3432 Alide2_3432 3573030 3573662 - Glycerol-3-phosphate acyltransferase TIGRFAM: Glycerol-3-phosphate acyltransferase%2C bacteria~HAMAP: Glycerol-3-phosphate acyltransferase%2C bacteria~KEGG: dia:Dtpsy_2243 protein of unknown function DUF205~PFAM: Glycerol-3-phosphate acyltransferase%2C bacteria gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3432 Alide2_3433 Alide2_3433 Alide2_3433 3573694 3574194 - ybaK/ebsC protein KEGG: ajs:Ajs_2754 YbaK/EbsC protein~TIGRFAM: Prolyl-tRNA editing protein%2C YbaK/EbsC~PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3433 Alide2_3434 Alide2_3434 Alide2_3434 3574258 3575319 - NADP-dependent oxidoreductase domain protein PFAM: NADP-dependent oxidoreductase domain~KEGG: ajs:Ajs_2755 aldo/keto reductase gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3434 Alide2_3435 Alide2_3435 Alide2_3435 3575389 3576474 - Polyamine-transporting ATPase PFAM: ABC transporter-like%3B Transport-associated OB%2C type 2~KEGG: dac:Daci_4799 ABC transporter-like protein~SMART: ATPase%2C AAA+ type%2C core gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3435 Alide2_3436 Alide2_3436 Alide2_3436 3576478 3578208 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: dac:Daci_4800 binding-protein-dependent transport systems inner membrane component gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3436 Alide2_3437 Alide2_3437 Alide2_3437 3578272 3579600 - extracellular solute-binding protein family 1 PFAM: Bacterial extracellular solute-binding%2C family 1~KEGG: dac:Daci_4801 extracellular solute-binding protein gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3437 Alide2_3438 Alide2_3438 Alide2_3438 3579720 3580652 + alpha/beta hydrolase fold protein PFAM: Alpha/beta hydrolase fold-1~KEGG: dia:Dtpsy_2246 alpha/beta hydrolase fold protein gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3438 Alide2_3439 Alide2_3439 Alide2_3439 3580775 3581779 + diaminopimelate dehydrogenase TIGRFAM: Diaminopimelate dehydrogenase~KEGG: ajs:Ajs_2757 diaminopimelate dehydrogenase~PFAM: Dihydrodipicolinate reductase%2C N-terminal gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3439 Alide2_3440 Alide2_3440 Alide2_3440 3581848 3582952 + hypothetical protein manually curated~KEGG: bpm:BURPS1710b_3602 hypothetical protein gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3440 Alide2_3441 Alide2_3441 Alide2_3441 3582964 3585672 + aminopeptidase N KEGG: dia:Dtpsy_2249 aminopeptidase N~TIGRFAM: Peptidase M1%2C alanyl aminopeptidase~PFAM: Peptidase M1%2C membrane alanine aminopeptidase%2C N-terminal gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3441 Alide2_3442 Alide2_3442 Alide2_3442 3585693 3586700 + Fructose-bisphosphatase KEGG: xtr:100486364 fructose-1%2C6-bisphosphatase class 1-like~PFAM: Fructose-1%2C6-bisphosphatase class 1/Sedoheputulose-1%2C7-bisphosphatase gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3442 Alide2_3443 Alide2_3443 Alide2_3443 3587149 3588114 - domain of unknown function DUF1738 KEGG: sew:SeSA_B0128 antirestriction protein~manually curated~PFAM: Domain of unknown function DUF1738 gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3443 Alide2_3444 Alide2_3444 Alide2_3444 3588126 3588401 - hypothetical protein gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3444 Alide2_3445 Alide2_3445 Alide2_3445 3588708 3589061 - helix-turn-helix domain protein KEGG: gca:Galf_1463 helix-turn-helix domain-containing protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3445 Alide2_3446 Alide2_3446 Alide2_3446 3589380 3589580 + hypothetical protein gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3446 Alide2_3447 Alide2_3447 Alide2_3447 3590250 3591032 - hypothetical protein gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3447 Alide2_3448 Alide2_3448 Alide2_3448 3591514 3591858 + Terminase small subunit PFAM: Terminase small subunit~KEGG: mch:Mchl_1604 terminase small subunit gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3448 Alide2_3449 Alide2_3449 Alide2_3449 3592064 3593536 - Primase 1 SMART: Primase%2C C-terminal 1~KEGG: aeh:Mlg_0791 ATPase-like protein gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3449 Alide2_3450 Alide2_3450 Alide2_3450 3593537 3594088 - virulence-associated E KEGG: ava:Ava_3094 virulence-associated E gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3450 Alide2_3451 Alide2_3451 Alide2_3451 3594075 3594305 - hypothetical protein gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3451 Alide2_3452 Alide2_3452 Alide2_3452 3594298 3594531 - hypothetical protein KEGG: glo:Glov_1426 hypothetical protein gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3452 Alide2_3453 Alide2_3453 Alide2_3453 3594678 3595349 - hypothetical protein gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3453 Alide2_3454 Alide2_3454 Alide2_3454 3595358 3596602 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: glo:Glov_1428 integrase family protein gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3454 Alide2_3455 Alide2_3455 Alide2_3455 3596919 3597695 - tRNA/rRNA methyltransferase (SpoU) PFAM: tRNA/rRNA methyltransferase%2C SpoU~KEGG: dia:Dtpsy_1238 tRNA/rRNA methyltransferase (SpoU) gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3455 Alide2_3456 Alide2_3456 Alide2_3456 3597692 3598312 - Ribonuclease H KEGG: dia:Dtpsy_1237 ribonuclease HII~PFAM: Ribonuclease HII/HIII gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3456 Alide2_3457 Alide2_3457 Alide2_3457 3598287 3599441 - Lipid-A-disaccharide synthase KEGG: dia:Dtpsy_1236 lipid-A-disaccharide synthase~manually curated~TIGRFAM: Glycosyl transferase%2C family 19~PFAM: Glycosyl transferase%2C family 19~HAMAP: Glycosyl transferase%2C family 19 gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3457 Alide2_3458 Alide2_3458 Alide2_3458 3599453 3600241 - Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase PFAM: Bacterial transferase hexapeptide repeat~TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase~HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase~KEGG: ajs:Ajs_2573 UDP-N-acetylglucosamine acyltransferase gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3458 Alide2_3459 Alide2_3459 Alide2_3459 3600267 3600707 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ KEGG: aav:Aave_1834 (3R)-hydroxymyristoyl-ACP dehydratase~TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ~PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase%2C FabA/FabZ gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3459 Alide2_3460 Alide2_3460 Alide2_3460 3600704 3601702 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase~HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase~KEGG: dia:Dtpsy_1233 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase~PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase%2C non-repeat region%3B Bacterial transferase hexapeptide repeat gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3460 Alide2_3461 Alide2_3461 Alide2_3461 3601731 3602255 - outer membrane chaperone Skp (OmpH) KEGG: ajs:Ajs_2576 outer membrane chaperone Skp (OmpH)~PFAM: Outer membrane chaperone Skp (OmpH)~SMART: Outer membrane chaperone Skp (OmpH) gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3461 Alide2_3462 Alide2_3462 Alide2_3462 3602255 3604552 - outer membrane protein assembly complex%2C YaeT protein KEGG: dia:Dtpsy_1231 outer membrane protein assembly complex%2C YaeT protein~TIGRFAM: Outer membrane assembly protein%2C YaeT~PFAM: Bacterial surface antigen (D15)%3B Surface antigen variable number gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3462 Alide2_3463 Alide2_3463 Alide2_3463 3604598 3605959 - membrane-associated zinc metalloprotease TIGRFAM: Peptidase M50%2C putative membrane-associated zinc metallopeptidase~PFAM: Peptidase M50%3B PDZ/DHR/GLGF~KEGG: ajs:Ajs_2578 peptidase RseP~SMART: PDZ/DHR/GLGF gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3463 Alide2_3464 Alide2_3464 Alide2_3464 3606062 3607237 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~KEGG: dia:Dtpsy_1229 1-deoxy-D-xylulose 5-phosphate reductoisomerase~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C N-terminal%3B 1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C C-terminal gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3464 Alide2_3465 Alide2_3465 Alide2_3465 3607241 3608086 - phosphatidate cytidylyltransferase PFAM: Phosphatidate cytidylyltransferase~KEGG: dia:Dtpsy_1228 phosphatidate cytidylyltransferase gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3465 Alide2_3466 Alide2_3466 Alide2_3466 3608125 3608862 - undecaprenyl diphosphate synthase TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like~KEGG: dia:Dtpsy_1227 undecaprenyl diphosphate synthase~PFAM: Di-trans-poly-cis-decaprenylcistransferase-like gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3466 Alide2_3467 Alide2_3467 Alide2_3467 3608874 3609434 - ribosome recycling factor KEGG: dia:Dtpsy_1226 ribosome recycling factor~TIGRFAM: Ribosome recycling factor~PFAM: Ribosome recycling factor gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3467 Alide2_3468 Alide2_3468 Alide2_3468 3609484 3610206 - uridylate kinase KEGG: dia:Dtpsy_1225 uridylate kinase~TIGRFAM: Uridylate kinase%2C bacteria~PFAM: Aspartate/glutamate/uridylate kinase gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3468 Alide2_3469 Alide2_3469 Alide2_3469 3610260 3611156 - translation elongation factor Ts KEGG: dia:Dtpsy_1224 elongation factor Ts~TIGRFAM: Translation elongation factor EFTs/EF1B~PFAM: Translation elongation factor EFTs/EF1B%2C dimerisation%3B Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3469 Alide2_3470 Alide2_3470 Alide2_3470 3611271 3612023 - ribosomal protein S2 KEGG: ajs:Ajs_2585 30S ribosomal protein S2~TIGRFAM: Ribosomal protein S2%2C bacteria/mitochondria/plastid~PFAM: Ribosomal protein S2 gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3470 Alide2_3471 Alide2_3471 Alide2_3471 3612242 3613588 + Amidase PFAM: Amidase~KEGG: ajs:Ajs_2586 amidase gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3471 Alide2_3472 Alide2_3472 Alide2_3472 3613643 3614884 + D-amino-acid dehydrogenase KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase~PFAM: FAD dependent oxidoreductase gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3472 Alide2_3473 Alide2_3473 Alide2_3473 3614914 3616443 + pseudogene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3473 Alide2_3474 Alide2_3474 Alide2_3474 3616467 3617300 + hypothetical protein KEGG: vap:Vapar_0122 hypothetical protein gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3474 Alide2_3475 Alide2_3475 Alide2_3475 3617282 3617965 - hypothetical protein KEGG: dia:Dtpsy_1218 hypothetical protein gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3475 Alide2_3476 Alide2_3476 Alide2_3476 3618129 3619112 - mammalian cell entry related domain protein KEGG: dia:Dtpsy_1217 mammalian cell entry related domain protein gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3476 Alide2_3477 Alide2_3477 Alide2_3477 3619134 3619970 - protein of unknown function DUF140 PFAM: Domain of unknown function DUF140~KEGG: dia:Dtpsy_1216 protein of unknown function DUF140 gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3477 Alide2_3478 Alide2_3478 Alide2_3478 3620050 3620508 - transcriptional regulator%2C MerR family KEGG: dia:Dtpsy_1215 transcriptional regulator%2C MerR family~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3478 Alide2_3479 Alide2_3479 Alide2_3479 3620549 3622564 + heavy metal translocating P-type ATPase TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P-type%2C heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: ajs:Ajs_2594 heavy metal translocating P-type ATPase~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B Haloacid dehalogenase-like hydrolase gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3479 Alide2_3480 Alide2_3480 Alide2_3480 3622711 3623337 + protein of unknown function DUF161 KEGG: dia:Dtpsy_1212 protein of unknown function DUF161~manually curated~PFAM: Protein of unknown function DUF161 gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3480 Alide2_3481 Alide2_3481 Alide2_3481 3623355 3623702 + hypothetical protein KEGG: dia:Dtpsy_1211 hypothetical protein gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3481 Alide2_3482 Alide2_3482 Alide2_3482 3623803 3624288 + blue (type 1) copper domain protein PFAM: Blue (type 1) copper domain~KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3482 Alide2_3483 Alide2_3483 Alide2_3483 3624315 3624794 + protein of unknown function DUF411 PFAM: Protein of unknown function DUF411~KEGG: dia:Dtpsy_1206 protein of unknown function DUF411 gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3483 Alide2_3484 Alide2_3484 Alide2_3484 3624833 3625846 + peptidase S58 DmpA PFAM: Peptidase S58%2C DmpA~KEGG: ajs:Ajs_2605 peptidase S58%2C DmpA gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3484 Alide2_3485 Alide2_3485 Alide2_3485 3625853 3627184 + TRAP transporter solute receptor TAXI family protein KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3485 Alide2_3486 Alide2_3486 Alide2_3486 3627188 3628849 - ATP-binding cassette protein%2C ChvD family TIGRFAM: ABC transporter ATP-binding protein%2C ChvD~PFAM: ABC transporter-like~KEGG: dia:Dtpsy_1200 putative ABC transporter ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3486 Alide2_3487 Alide2_3487 Alide2_3487 3629107 3630813 + DEAD/DEAH box helicase domain protein KEGG: ajs:Ajs_2609 DEAD/DEAH box helicase domain-containing protein~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3487 Alide2_3488 Alide2_3488 Alide2_3488 3630914 3632764 + peptidase M14 carboxypeptidase A KEGG: ajs:Ajs_2610 peptidase M14%2C carboxypeptidase A~PFAM: Peptidase M14%2C carboxypeptidase A~SMART: Peptidase M14%2C carboxypeptidase A gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3488 Alide2_3489 Alide2_3489 Alide2_3489 3633028 3633630 + PEP motif putative anchor domain protein TIGRFAM: PEP-CTERM anchor~PFAM: PEP-CTERM bacterial gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3489 Alide2_3490 Alide2_3490 Alide2_3490 3633786 3634082 + hypothetical protein KEGG: ajs:Ajs_2619 hypothetical protein gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3490 Alide2_3491 Alide2_3491 Alide2_3491 3634100 3634213 - hypothetical protein gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3491 Alide2_3492 Alide2_3492 Alide2_3492 3634246 3634473 - hypothetical protein KEGG: dia:Dtpsy_2403 hypothetical protein gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3492 Alide2_3493 Alide2_3493 Alide2_3493 3634682 3635053 + pseudogene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3493 Alide2_3494 Alide2_3494 Alide2_3494 3635053 3635445 + LrgB family protein PFAM: LrgB-like protein~KEGG: dia:Dtpsy_2405 LrgB family protein gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3494 Alide2_3495 Alide2_3495 Alide2_3495 3635440 3636390 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_2978 LysR family transcriptional regulator gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3495 Alide2_3496 Alide2_3496 Alide2_3496 3636562 3637758 + Glutaryl-CoA dehydrogenase KEGG: dia:Dtpsy_2407 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA oxidase/dehydrogenase%2C type 1 gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3496 Alide2_3497 Alide2_3497 Alide2_3497 3637818 3639059 + Formyl-CoA transferase KEGG: dia:Dtpsy_2408 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3497 Alide2_3498 Alide2_3498 Alide2_3498 3639128 3640096 + hypothetical protein KEGG: ajs:Ajs_2981 hypothetical protein gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3498 Alide2_3499 Alide2_3499 Alide2_3499 3640299 3640823 + hypothetical protein KEGG: dia:Dtpsy_2411 hypothetical protein gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3499 Alide2_3500 Alide2_3500 Alide2_3500 3640858 3641490 + hypothetical protein KEGG: dia:Dtpsy_2412 hypothetical protein gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3500 Alide2_3501 Alide2_3501 Alide2_3501 3641478 3642419 - TrkA-N domain protein PFAM: Regulator of K+ conductance%2C N-terminal~KEGG: ajs:Ajs_2986 NAD-dependent epimerase/dehydratase gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3501 Alide2_3502 Alide2_3502 Alide2_3502 3642488 3643549 + Ferredoxin--NAD(+) reductase KEGG: dia:Dtpsy_2414 CDP-6-deoxy-delta-3%2C4-glucoseen reductase~PFAM: Oxidoreductase FAD/NAD(P)-binding%3B Oxidoreductase%2C FAD-binding domain%3B Ferredoxin gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3502 Alide2_3503 Alide2_3503 Alide2_3503 3643556 3644704 - Pyridoxal-5'-phosphate-dependent protein beta subunit PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit~KEGG: hch:HCH_06702 cysteine synthase gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3503 Alide2_3504 Alide2_3504 Alide2_3504 3644821 3645738 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: reu:Reut_B5443 regulatory protein%2C LysR:LysR%2C substrate-binding gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3504 Alide2_3505 Alide2_3505 Alide2_3505 3645949 3646959 + Uroporphyrinogen decarboxylase (URO-D) PFAM: Uroporphyrinogen decarboxylase (URO-D)~KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3505 Alide2_3506 Alide2_3506 Alide2_3506 3647012 3647995 + hypothetical protein KEGG: reu:Reut_B5440 hypothetical protein gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3506 Alide2_3507 Alide2_3507 Alide2_3507 3648045 3649016 + hypothetical protein KEGG: ajs:Ajs_2989 hypothetical protein gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3507 Alide2_3508 Alide2_3508 Alide2_3508 3649062 3649928 - YdjC family protein PFAM: Uncharacterised protein family UPF0249/HpnK~KEGG: vap:Vapar_5574 YdjC family protein gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3508 Alide2_3509 Alide2_3509 Alide2_3509 3649947 3650357 + GtrA family protein PFAM: GtrA-like protein~KEGG: axy:AXYL_00714 GtrA-like protein gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3509 Alide2_3510 Alide2_3510 Alide2_3510 3650305 3651882 - glycosyl transferase family 39 PFAM: Glycosyl transferase%2C family 39~KEGG: dac:Daci_2190 glycosyl transferase family protein gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3510 Alide2_3511 Alide2_3511 Alide2_3511 3651879 3652859 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: vap:Vapar_5572 glycosyl transferase family 2 gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3511 Alide2_3512 Alide2_3512 Alide2_3512 3653055 3653573 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TIGRFAM: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK~KEGG: ajs:Ajs_2990 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase~PFAM: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3512 Alide2_3513 Alide2_3513 Alide2_3513 3653570 3655138 - poly(A) polymerase TIGRFAM: Poly(A) polymerase%2C PcnB~KEGG: dia:Dtpsy_2418 poly(A) polymerase~PFAM: Poly A polymerase%2C head domain gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3513 Alide2_3514 Alide2_3514 Alide2_3514 3655135 3655809 - HAD-superfamily subfamily IB hydrolase%2C TIGR01490 TIGRFAM: HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like%2C bacterial%3B HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like~KEGG: dia:Dtpsy_2419 HAD-superfamily subfamily IB hydrolase%2C TIGR01490 gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3514 Alide2_3515 Alide2_3515 Alide2_3515 3655806 3656513 - DnaA regulatory inactivator Hda KEGG: aav:Aave_1971 chromosomal replication initiator%2C DnaA~TIGRFAM: Chromosomal replication control%2C regulator Hda~PFAM: Chromosomal replication control%2C initiator (DnaA)/regulator (Hda) gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3515 Alide2_3516 Alide2_3516 Alide2_3516 3656836 3658788 + gamma-glutamyltransferase TIGRFAM: Gamma-glutamyltranspeptidase~KEGG: aci:ACIAD0929 gamma-glutamyltranspeptidase precursor~PFAM: Gamma-glutamyltranspeptidase gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3516 Alide2_3517 Alide2_3517 Alide2_3517 3658945 3659985 + phosphoribosylformylglycinamidine cyclo-ligase TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase~KEGG: ajs:Ajs_2994 phosphoribosylaminoimidazole synthetase~PFAM: AIR synthase-related protein%2C C-terminal%3B AIR synthase-related protein gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3517 Alide2_3518 Alide2_3518 Alide2_3518 3660010 3661095 + protein of unknown function UPF0118 PFAM: Uncharacterised protein family UPF0118~KEGG: dia:Dtpsy_2422 hypothetical protein gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3518 Alide2_3519 Alide2_3519 Alide2_3519 3661327 3661722 + UspA domain-containing protein PFAM: UspA~KEGG: dia:Dtpsy_2423 UspA domain protein gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3519 Alide2_3520 Alide2_3520 Alide2_3520 3661724 3662572 - hypothetical protein KEGG: ajs:Ajs_2998 hypothetical protein gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3520 Alide2_3521 Alide2_3521 Alide2_3521 3662589 3664154 - integral membrane protein MviN KEGG: ajs:Ajs_2999 integral membrane protein MviN~TIGRFAM: Flagellin assembly%2C membrane protein MviN~PFAM: Flagellin assembly%2C membrane protein MviN gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3521 Alide2_3522 Alide2_3522 Alide2_3522 3664259 3664558 + ribosomal protein S20 KEGG: dia:Dtpsy_2427 30S ribosomal protein S20~TIGRFAM: Ribosomal protein S20~PFAM: Ribosomal protein S20 gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3522 Alide2_3523 Alide2_3523 Alide2_3523 3664773 3665453 - protein of unknown function DUF45 KEGG: vha:VIBHAR_05618 hypothetical protein~manually curated~PFAM: Protein of unknown function DUF45 gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3523 Alide2_3524 Alide2_3524 Alide2_3524 3665474 3665746 - hypothetical protein gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3524 Alide2_3525 Alide2_3525 Alide2_3525 3665756 3667270 - transposase IS66 PFAM: Transposase%2C IS66~KEGG: dia:Dtpsy_2523 transposase IS66 gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3525 Alide2_3526 Alide2_3526 Alide2_3526 3667353 3667685 - IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2-like~KEGG: rfr:Rfer_2710 IS66 Orf2 like gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3526 Alide2_3527 Alide2_3527 Alide2_3527 3667682 3668110 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: rfr:Rfer_2709 transposase IS3/IS911 gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3527 Alide2_3528 Alide2_3528 Alide2_3528 3668325 3669239 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3528 Alide2_3529 Alide2_3529 Alide2_3529 3669236 3669559 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3529 Alide2_3530 Alide2_3530 Alide2_3530 3669631 3669828 - pseudogene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3530 Alide2_3531 Alide2_3531 Alide2_3531 3669924 3670997 - putative porin precursor transmembrane protein manually curated~KEGG: pol:Bpro_4383 putative porin precursor transmembrane protein gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3531 Alide2_3532 Alide2_3532 Alide2_3532 3672034 3672837 - IstB domain protein ATP-binding protein KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3532 Alide2_3533 Alide2_3533 Alide2_3533 3672827 3674353 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: axy:AXYL_06593 integrase family protein 10 gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3533 Alide2_3534 Alide2_3534 Alide2_3534 3674491 3674811 - hypothetical protein gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3534 Alide2_3535 Alide2_3535 Alide2_3535 3674802 3675344 - hypothetical protein gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3535 Alide2_3536 Alide2_3536 Alide2_3536 3675319 3675807 - hypothetical protein gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3536 Alide2_3537 Alide2_3537 Alide2_3537 3676078 3676518 + Dimethylmenaquinone methyltransferase PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase~KEGG: vap:Vapar_5710 hypothetical protein gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3537 Alide2_3538 Alide2_3538 Alide2_3538 3676562 3676876 - Protein of unknown function DUF3579 PFAM: Protein of unknown function DUF3579~KEGG: dia:Dtpsy_2428 hypothetical protein gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3538 Alide2_3539 Alide2_3539 Alide2_3539 3677114 3678310 + acetylornithine and succinylornithine aminotransferase TIGRFAM: Acetylornithine/succinylornithine aminotransferase~KEGG: dia:Dtpsy_2429 acetylornithine aminotransferase~PFAM: Aminotransferase class-III gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3539 Alide2_3540 Alide2_3540 Alide2_3540 3678327 3679247 + Ornithine carbamoyltransferase PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding domain~TIGRFAM: Ornithine carbamoyltransferase~HAMAP: Ornithine carbamoyltransferase~KEGG: dia:Dtpsy_2430 ornithine carbamoyltransferase gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3540 Alide2_3541 Alide2_3541 Alide2_3541 3679260 3679793 - hypothetical protein KEGG: bmj:BMULJ_04805 hypothetical protein gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3541 Alide2_3542 Alide2_3542 Alide2_3542 3679800 3680009 - Protein of unknown function DUF2945 PFAM: Protein of unknown function DUF2945~KEGG: pde:Pden_4005 hypothetical protein gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3542 Alide2_3543 Alide2_3543 Alide2_3543 3680109 3680456 + protein of unknown function UPF0153 PFAM: Uncharacterised protein family UPF0153~KEGG: ajs:Ajs_3004 hypothetical protein gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3543 Alide2_3544 Alide2_3544 Alide2_3544 3680516 3680761 - hypothetical protein KEGG: dac:Daci_2177 hypothetical protein gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3544 Alide2_3545 Alide2_3545 Alide2_3545 3680763 3682703 - ferrous iron transport protein B KEGG: dia:Dtpsy_2434 ferrous iron transport protein B~TIGRFAM: Ferrous iron transport protein B%3B Small GTP-binding protein~PFAM: Ferrous iron transport protein B%2C N-terminal%3B GTP-binding protein%2C HSR1-related%3B Nucleoside recognition%3B Ferrous iron transport protein B%2C C-terminal gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3545 Alide2_3546 Alide2_3546 Alide2_3546 3682700 3682999 - FeoA family protein KEGG: dia:Dtpsy_2435 FeoA family protein~PFAM: Ferrous iron transporter%2C FeoA subunit~SMART: Ferrous iron transporter%2C FeoA subunit gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3546 Alide2_3547 Alide2_3547 Alide2_3547 3683119 3683442 + protein of unknown function UPF0153 PFAM: Uncharacterised protein family UPF0153~KEGG: dia:Dtpsy_2436 protein of unknown function UPF0153 gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3547 Alide2_3548 Alide2_3548 Alide2_3548 3683444 3684091 + arylformamidase TIGRFAM: Arylformamidase~KEGG: dia:Dtpsy_2438 arylformamidase~PFAM: Putative cyclase gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3548 Alide2_3549 Alide2_3549 Alide2_3549 3684274 3685272 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: axy:AXYL_03752 LysR family regulatory helix-turn-helix protein 123 gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3549 Alide2_3550 Alide2_3550 Alide2_3550 3685269 3686243 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: bav:BAV1563 ABC transporter%2C permease protein gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3550 Alide2_3551 Alide2_3551 Alide2_3551 3686240 3687139 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: axy:AXYL_03755 binding-protein-dependent transport system inner membrane component family protein 46 gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3551 Alide2_3552 Alide2_3552 Alide2_3552 3687136 3688110 + oligopeptide/dipeptide ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal~KEGG: rpf:Rpic12D_1762 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter-like%3B Oligopeptide/dipeptide ABC transporter%2C C-terminal gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3552 Alide2_3553 Alide2_3553 Alide2_3553 3688107 3689102 + oligopeptide/dipeptide ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal~KEGG: axy:AXYL_03757 oligopeptide/dipeptide abc transporter%2C ATP-binding protein%2C C-terminal domain-containing protein 6~PFAM: ABC transporter-like%3B Oligopeptide/dipeptide ABC transporter%2C C-terminal gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3553 Alide2_3554 Alide2_3554 Alide2_3554 3689226 3690794 + ABC-type transporter%2C periplasmic subunit PFAM: Bacterial extracellular solute-binding protein%2C family 5~KEGG: bav:BAV1559 ABC transporter%2C substrate binding protein gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3554 Alide2_3555 Alide2_3555 Alide2_3555 3690794 3692101 + Palmitoyl-CoA hydrolase KEGG: axy:AXYL_03759 BAAT/acyl-CoA thioester hydrolase family protein 1~PFAM: BAAT/Acyl-CoA thioester hydrolase C-terminal%3B Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3555 Alide2_3556 Alide2_3556 Alide2_3556 3692107 3693159 - Adenosine deaminase PFAM: Adenosine/AMP deaminase~TIGRFAM: Adenosine deaminase~HAMAP: Adenosine deaminase~KEGG: dia:Dtpsy_2442 adenosine deaminase gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3556 Alide2_3557 Alide2_3557 Alide2_3557 3693252 3693605 - protein of unknown function DUF861 cupin_3 PFAM: Domain of unknown function DUF861%2C cupin-3~KEGG: axy:AXYL_05003 hypothetical protein gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3557 Alide2_3558 Alide2_3558 Alide2_3558 3693644 3694438 - transcriptional regulator%2C IclR family KEGG: rso:RSc3411 transcription regulator protein~PFAM: Transcription regulator IclR%2C C-terminal%3B Transcription regulator IclR%2C N-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3558 Alide2_3559 Alide2_3559 Alide2_3559 3694642 3695412 + ABC-type transporter%2C periplasmic subunit family 3 KEGG: rsl:RPSI07_0031 putative amino acid-binding periplasmic (Pbp) ABC transporter protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3559 Alide2_3560 Alide2_3560 Alide2_3560 3695439 3696104 + polar amino acid ABC transporter%2C inner membrane subunit KEGG: rso:RSc3409 amino-acid transmembrane ABC transporter protein~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3560 Alide2_3561 Alide2_3561 Alide2_3561 3696101 3696847 + Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: rso:RSc3408 ABC transporter ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3561 Alide2_3562 Alide2_3562 Alide2_3562 3696844 3698142 + FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: xtr:100491525 hypothetical protein LOC100491525 gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3562 Alide2_3563 Alide2_3563 Alide2_3563 3698193 3699359 - basic membrane lipoprotein PFAM: Basic membrane lipoprotein~KEGG: dia:Dtpsy_2443 basic membrane lipoprotein gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3563 Alide2_3564 Alide2_3564 Alide2_3564 3699400 3700545 - basic membrane lipoprotein PFAM: Basic membrane lipoprotein~KEGG: dia:Dtpsy_2444 basic membrane lipoprotein gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3564 Alide2_3565 Alide2_3565 Alide2_3565 3700568 3701488 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dia:Dtpsy_2445 inner-membrane translocator gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3565 Alide2_3566 Alide2_3566 Alide2_3566 3701488 3702561 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dia:Dtpsy_2446 inner-membrane translocator gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3566 Alide2_3567 Alide2_3567 Alide2_3567 3702548 3704137 - Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_2447 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3567 Alide2_3568 Alide2_3568 Alide2_3568 3704274 3707852 - pseudogene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3568 Alide2_3569 Alide2_3569 Alide2_3569 3704656 3705786 + putative transposase KEGG: pol:Bpro_2745 putative transposase gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3569 Alide2_3570 Alide2_3570 Alide2_3570 3705752 3706045 + hypothetical protein KEGG: pol:Bpro_2744 hypothetical protein gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3570 Alide2_3571 Alide2_3571 Alide2_3571 3708138 3708761 - transcriptional regulator%2C Crp/Fnr family KEGG: dia:Dtpsy_2451 transcriptional regulator%2C Crp/Fnr family~PFAM: Cyclic nucleotide-binding domain%3B HTH transcriptional regulator%2C Crp~SMART: HTH transcriptional regulator%2C Crp gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3571 Alide2_3572 Alide2_3572 Alide2_3572 3708973 3710031 + porin Gram-negative type PFAM: Porin%2C Gram-negative type~KEGG: dia:Dtpsy_2452 porin gram-negative type gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3572 Alide2_3573 Alide2_3573 Alide2_3573 3710141 3710578 + histidine triad (HIT) protein PFAM: Histidine triad (HIT) protein~KEGG: dia:Dtpsy_2454 histidine triad (HIT) protein gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3573 Alide2_3574 Alide2_3574 Alide2_3574 3710575 3711522 - Glyoxylate reductase KEGG: dia:Dtpsy_2455 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3574 Alide2_3575 Alide2_3575 Alide2_3575 3711704 3712630 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: ajs:Ajs_3110 Bcr/CflA subfamily drug resistance transporter gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3575 Alide2_3576 Alide2_3576 Alide2_3576 3712620 3713582 + tRNA dimethylallyltransferase PFAM: tRNA isopentenyltransferase~TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~KEGG: dia:Dtpsy_2457 tRNA delta(2)-isopentenylpyrophosphate transferase~HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3576 Alide2_3577 Alide2_3577 Alide2_3577 3713588 3714250 + Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_2458 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3577 Alide2_3578 Alide2_3578 Alide2_3578 3714258 3714686 - heat shock protein Hsp20 PFAM: Heat shock protein Hsp20~KEGG: dia:Dtpsy_2459 heat shock protein HSP20 gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3578 Alide2_3579 Alide2_3579 Alide2_3579 3714819 3717458 + protein of unknown function DUF214 PFAM: Domain of unknown function DUF214%2C ABC transporter permease~KEGG: dia:Dtpsy_2460 protein of unknown function DUF214 gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3579 Alide2_3580 Alide2_3580 Alide2_3580 3717477 3718547 + Cysteine synthase KEGG: ajs:Ajs_3115 pyridoxal-5'-phosphate-dependent enzyme%2C beta subunit~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3580 Alide2_3581 Alide2_3581 Alide2_3581 3718544 3719638 + secreted hydrolase-like protein KEGG: ajs:Ajs_3116 secreted hydrolase-like protein gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3581 Alide2_3582 Alide2_3582 Alide2_3582 3719696 3720697 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dia:Dtpsy_2463 inner-membrane translocator gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3582 Alide2_3583 Alide2_3583 Alide2_3583 3720716 3721600 - ABC-type transporter%2C integral membrane subunit KEGG: dia:Dtpsy_2464 inner-membrane translocator~manually curated~PFAM: ABC transporter permease gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3583 Alide2_3584 Alide2_3584 Alide2_3584 3721647 3722846 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: ajs:Ajs_3119 extracellular ligand-binding receptor gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3584 Alide2_3585 Alide2_3585 Alide2_3585 3722918 3724120 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dia:Dtpsy_2466 extracellular ligand-binding receptor gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3585 Alide2_3586 Alide2_3586 Alide2_3586 3724170 3724880 - ABC transporter related protein KEGG: ajs:Ajs_3121 ABC transporter related~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3586 Alide2_3587 Alide2_3587 Alide2_3587 3724882 3725652 - Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_2468 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3587 Alide2_3588 Alide2_3588 Alide2_3588 3725815 3726597 - putative transcriptional regulator%2C ModE family PFAM: Transport-associated OB%2C type 1%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_2469 putative transcriptional regulator%2C ModE family gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3588 Alide2_3589 Alide2_3589 Alide2_3589 3726664 3727428 + molybdenum ABC transporter%2C periplasmic molybdate-binding protein KEGG: dia:Dtpsy_2470 molybdenum ABC transporter%2C periplasmic molybdate-binding protein~TIGRFAM: Molybdenum ABC transporter%2C periplasmic binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1 gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3589 Alide2_3590 Alide2_3590 Alide2_3590 3727522 3728205 + molybdate ABC transporter%2C inner membrane subunit KEGG: ajs:Ajs_3125 molybdate ABC transporter%2C inner membrane subunit~TIGRFAM: Molybdate ABC transporter%2C permease protein~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3590 Alide2_3591 Alide2_3591 Alide2_3591 3728202 3729278 + molybdate ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Molybdate ABC transporter%2C ATP-binding protein~KEGG: ajs:Ajs_3126 molybdate ABC transporter%2C ATPase subunit~PFAM: ABC transporter-like%3B Transport-associated OB%2C type 1 gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3591 Alide2_3592 Alide2_3592 Alide2_3592 3729393 3730322 + hypothetical protein KEGG: pna:Pnap_0462 hypothetical protein gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3592 Alide2_3593 Alide2_3593 Alide2_3593 3730343 3731170 - extracellular solute-binding protein family 1 PFAM: Bacterial extracellular solute-binding%2C family 1~KEGG: ajs:Ajs_3127 extracellular solute-binding protein gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3593 Alide2_3594 Alide2_3594 Alide2_3594 3731167 3731943 - Phosphonate-transporting ATPase PFAM: ABC transporter-like~KEGG: ajs:Ajs_3128 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3594 Alide2_3595 Alide2_3595 Alide2_3595 3731940 3732674 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: ajs:Ajs_3129 binding-protein-dependent transport systems inner membrane component gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3595 Alide2_3596 Alide2_3596 Alide2_3596 3732725 3733864 + transcriptional regulator of molybdate metabolism%2C LysR family PFAM: HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_3130 molybdate metabolism transcriptional regulator gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3596 Alide2_3597 Alide2_3597 Alide2_3597 3733861 3735423 + phospholipase D/Transphosphatidylase KEGG: maq:Maqu_3283 phospholipase D/transphosphatidylase~PFAM: Phospholipase D/Transphosphatidylase~SMART: Phospholipase D/Transphosphatidylase gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3597 Alide2_3598 Alide2_3598 Alide2_3598 3735480 3737126 - o-succinylbenzoate--CoA ligase KEGG: dia:Dtpsy_2483 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3598 Alide2_3599 Alide2_3599 Alide2_3599 3737466 3739391 + DNA primase TIGRFAM: DNA primase%2C DnaG~KEGG: ajs:Ajs_3137 DNA primase gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3599 Alide2_3600 Alide2_3600 Alide2_3600 3739650 3742058 + RNA polymerase%2C sigma 70 subunit%2C RpoD KEGG: dia:Dtpsy_2485 RNA polymerase%2C sigma 70 subunit%2C RpoD~TIGRFAM: RNA polymerase sigma factor RpoD%2C C-terminal%3B RNA polymerase sigma-70~PFAM: RNA polymerase sigma factor 70%2C non-essential domain%3B RNA polymerase sigma factor 70%2C region 1.1%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 3%3B RNA polymerase sigma-70 region 4 gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3600 Alide2_3601 Alide2_3601 Alide2_3601 3742178 3742264 + pseudogene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3601 Alide2_3602 Alide2_3602 Alide2_3602 3742323 3743006 + methyladenine glycosylase KEGG: neu:NE0447 hypothetical protein~manually curated~PFAM: Methyladenine glycosylase gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3602 Alide2_3603 Alide2_3603 Alide2_3603 3743053 3744003 + 2-dehydropantoate 2-reductase TIGRFAM: Ketopantoate reductase ApbA/PanE~KEGG: ajs:Ajs_3139 2-dehydropantoate 2-reductase~PFAM: Ketopantoate reductase ApbA/PanE%2C N-terminal%3B Ketopantoate reductase ApbA/PanE%2C C-terminal gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3603 Alide2_3604 Alide2_3604 Alide2_3604 3744077 3745078 - hypothetical protein KEGG: dia:Dtpsy_2488 hypothetical protein gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3604 Alide2_3605 Alide2_3605 Alide2_3605 3745112 3746305 - Formyl-CoA transferase KEGG: ajs:Ajs_3142 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3605 Alide2_3606 Alide2_3606 Alide2_3606 3746336 3747265 - Hydroxymethylglutaryl-CoA lyase KEGG: dia:Dtpsy_2490 pyruvate carboxyltransferase~PFAM: Pyruvate carboxyltransferase gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3606 Alide2_3607 Alide2_3607 Alide2_3607 3747374 3748303 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ajs:Ajs_3144 LysR family transcriptional regulator gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3607 Alide2_3608 Alide2_3608 Alide2_3608 3748455 3748760 + putative transcriptional regulator KEGG: dia:Dtpsy_2492 putative transcriptional regulator gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3608 Alide2_3609 Alide2_3609 Alide2_3609 3748876 3749235 + Peptidylprolyl isomerase KEGG: dia:Dtpsy_2493 peptidylprolyl isomerase~PFAM: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3609 Alide2_3610 Alide2_3610 Alide2_3610 3749293 3750684 - Ribosomal protein S12 methylthiotransferase rimO SMART: Elongator protein 3/MiaB/NifB~TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO%3B Methylthiotransferase~KEGG: dia:Dtpsy_2494 ribosomal protein S12 methylthiotransferase~HAMAP: Ribosomal protein S12 methylthiotransferase RimO~PFAM: Methylthiotransferase%2C N-terminal%3B Radical SAM gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3610 Alide2_3611 Alide2_3611 Alide2_3611 3750722 3751261 - polyhydroxyalkonate synthesis repressor%2C PhaR KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor%2C PhaR~TIGRFAM: Polyhydroxyalkanoate synthesis repressor PhaR~PFAM: PHA accumulation regulator DNA-binding%2C N-terminal%3B PHB accumulation regulatory gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3611 Alide2_3612 Alide2_3612 Alide2_3612 3751454 3751762 - RNP-1 like RNA-binding protein KEGG: dia:Dtpsy_2389 RNP-1 like RNA-binding protein~PFAM: RNA recognition motif domain~SMART: RNA recognition motif domain gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3612 Alide2_3613 Alide2_3613 Alide2_3613 3751827 3752042 - hypothetical protein KEGG: dia:Dtpsy_2387 hypothetical protein gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3613 Alide2_3614 Alide2_3614 Alide2_3614 3752581 3754827 - (p)ppGpp synthetase I%2C SpoT/RelA SMART: RelA/SpoT~TIGRFAM: RelA/SpoT protein~KEGG: ajs:Ajs_3149 (p)ppGpp synthetase I%2C SpoT/RelA~PFAM: RelA/SpoT%3B TGS%3B Amino acid-binding ACT gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3614 Alide2_3615 Alide2_3615 Alide2_3615 3754824 3755765 - alpha/beta hydrolase fold protein KEGG: ajs:Ajs_3150 alpha/beta hydrolase fold~manually curated~PFAM: Alpha/beta hydrolase fold-1 gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3615 Alide2_3616 Alide2_3616 Alide2_3616 3755835 3756617 + 3-hydroxybutyrate dehydrogenase TIGRFAM: 3-hydroxybutyrate dehydrogenase~KEGG: dia:Dtpsy_2498 3-hydroxybutyrate dehydrogenase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3616 Alide2_3617 Alide2_3617 Alide2_3617 3756672 3757400 - protein of unknown function DUF541 PFAM: Protein of unknown function DUF541~KEGG: dia:Dtpsy_2499 protein of unknown function DUF541 gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3617 Alide2_3618 Alide2_3618 Alide2_3618 3757597 3758328 + two component transcriptional regulator%2C winged helix family KEGG: dia:Dtpsy_2500 osmolarity response regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3618 Alide2_3619 Alide2_3619 Alide2_3619 3758401 3759906 + integral membrane sensor signal transduction histidine kinase KEGG: dia:Dtpsy_2501 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3619 Alide2_3620 Alide2_3620 Alide2_3620 3759979 3760458 - 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase KEGG: dia:Dtpsy_2502 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase~TIGRFAM: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core~PFAM: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3620 Alide2_3621 Alide2_3621 Alide2_3621 3760479 3761327 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~KEGG: dia:Dtpsy_2503 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3621 Alide2_3622 Alide2_3622 Alide2_3622 3761406 3764897 + transcription-repair coupling factor TIGRFAM: Transcription-repair coupling factor~PFAM: Transcription factor CarD%3B DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal%3B Transcription-repair-coupling factor domain~KEGG: ajs:Ajs_3157 transcription-repair coupling factor~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3622 Alide2_3623 Alide2_3623 Alide2_3623 3764904 3765584 + hypothetical protein KEGG: dia:Dtpsy_2505 hypothetical protein gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3623 Alide2_3624 Alide2_3624 Alide2_3624 3765751 3767925 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: ppw:PputW619_2172 HAD family hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase-like hydrolase%3B Mannitol dehydrogenase%2C C-terminal gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3624 Alide2_3625 Alide2_3625 Alide2_3625 3768267 3768986 + phosphoserine phosphatase SerB TIGRFAM: Phosphoserine phosphatase SerB%3B HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like~KEGG: dia:Dtpsy_2506 phosphoserine phosphatase SerB~PFAM: Haloacid dehalogenase-like hydrolase gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3625 Alide2_3626 Alide2_3626 Alide2_3626 3769043 3769786 + two component transcriptional regulator%2C LytTR family KEGG: ajs:Ajs_3314 LytR/AlgR family transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B LytTr%2C DNA-binding domain~SMART: Signal transduction response regulator%2C receiver domain%3B LytTr%2C DNA-binding domain gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3626 Alide2_3627 Alide2_3627 Alide2_3627 3769886 3770704 - zinc/iron permease PFAM: Zinc/iron permease~KEGG: dia:Dtpsy_2667 zinc/iron permease gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3627 Alide2_3628 Alide2_3628 Alide2_3628 3770815 3771699 - Carboxymethylenebutenolidase KEGG: dia:Dtpsy_2668 carboxymethylenebutenolidase~PFAM: Dienelactone hydrolase gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3628 Alide2_3629 Alide2_3629 Alide2_3629 3771785 3772549 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: bpt:Bpet4160 putative enoyl-CoA hydratase gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3629 Alide2_3630 Alide2_3630 Alide2_3630 3772573 3773766 - Formyl-CoA transferase KEGG: bpt:Bpet4161 acyl-CoA transferase/carnitine dehydratase~PFAM: CoA-transferase family III gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3630 Alide2_3631 Alide2_3631 Alide2_3631 3773794 3774768 - putative secreted protein KEGG: bpt:Bpet4162 putative secreted protein gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3631 Alide2_3632 Alide2_3632 Alide2_3632 3774903 3775898 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: reu:Reut_A3085 LysR family transcriptional regulator gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3632 Alide2_3633 Alide2_3633 Alide2_3633 3775906 3776430 - Carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase~KEGG: axy:AXYL_04995 alkylhydroperoxidase AhpD family core domain-containing protein 7 gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3633 Alide2_3634 Alide2_3634 Alide2_3634 3776450 3777418 - hypothetical protein KEGG: dac:Daci_0250 hypothetical protein gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3634 Alide2_3635 Alide2_3635 Alide2_3635 3777451 3778266 - 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: axy:AXYL_00411 short chain dehydrogenase family protein 3~PFAM: Short-chain dehydrogenase/reductase SDR gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3635 Alide2_3636 Alide2_3636 Alide2_3636 3778343 3779272 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: axy:AXYL_00410 LysR family regulatory helix-turn-helix protein 12 gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3636 Alide2_3637 Alide2_3637 Alide2_3637 3779289 3782054 - DNA polymerase I SMART: DNA-directed DNA polymerase%2C family A%2C palm domain%3B 5'-3' exonuclease%2C N-terminal%3B Helix-hairpin-helix motif%2C class 2%3B 3'-5' exonuclease~TIGRFAM: DNA polymerase 1~KEGG: dia:Dtpsy_2669 DNA polymerase I~PFAM: DNA-directed DNA polymerase%2C family A%2C palm domain%3B 5'-3' exonuclease%2C alpha-helical arch%2C N-terminal%3B 5'-3' exonuclease%2C SAM-fold domain%3B 3'-5' exonuclease gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3637 Alide2_3638 Alide2_3638 Alide2_3638 3782136 3782558 + hypothetical protein KEGG: ajs:Ajs_3318 hypothetical protein gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3638 Alide2_3639 Alide2_3639 Alide2_3639 3782590 3782955 + Protein of unknown function DUF2782 PFAM: Protein of unknown function DUF2782~KEGG: dia:Dtpsy_2671 hypothetical protein gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3639 Alide2_3640 Alide2_3640 Alide2_3640 3783033 3783983 + homoserine kinase TIGRFAM: Homoserine kinase ThrB~KEGG: ajs:Ajs_3320 homoserine kinase~PFAM: Aminoglycoside phosphotransferase gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3640 Alide2_3641 Alide2_3641 Alide2_3641 3784030 3784851 + hypothetical protein KEGG: ajs:Ajs_3321 hypothetical protein gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3641 Alide2_3642 Alide2_3642 Alide2_3642 3784864 3786480 - diguanylate cyclase with extracellular sensor TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted%3B Extracellular solute-binding protein%2C family 3~KEGG: dba:Dbac_1471 diguanylate cyclase~SMART: Diguanylate cyclase%2C predicted%3B Extracellular solute-binding protein%2C family 3 gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3642 Alide2_3643 Alide2_3643 Alide2_3643 3786748 3788697 + protein of unknown function DUF839 PFAM: Protein of unknown function DUF839~KEGG: aav:Aave_1926 putative exported alkaline phosphatase gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3643 Alide2_3644 Alide2_3644 Alide2_3644 3788719 3791109 - UvrD/REP helicase PFAM: DNA helicase%2C UvrD/REP type~KEGG: dia:Dtpsy_2677 UvrD/REP helicase gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3644 Alide2_3645 Alide2_3645 Alide2_3645 3791311 3792288 + guanosine monophosphate reductase TIGRFAM: Guanosine monophosphate reductase 2~KEGG: aav:Aave_1911 guanosine 5'-monophosphate oxidoreductase~PFAM: IMP dehydrogenase/GMP reductase gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3645 Alide2_3646 Alide2_3646 Alide2_3646 3792625 3792948 - Protein of unknown function DUF2149 PFAM: Protein of unknown function DUF2149~KEGG: dia:Dtpsy_2683 hypothetical protein gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3646 Alide2_3647 Alide2_3647 Alide2_3647 3792945 3793481 - hypothetical protein KEGG: gpb:HDN1F_26000 hypothetical protein gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3647 Alide2_3648 Alide2_3648 Alide2_3648 3793544 3794140 - kinetoplast-associated protein-like protein KEGG: lma:LmjF27.0240 kinetoplast-associated protein-like protein gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3648 Alide2_3649 Alide2_3649 Alide2_3649 3795030 3799097 - Cobaltochelatase KEGG: dia:Dtpsy_2685 cobaltochelatase~PFAM: CobN/magnesium chelatase gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3649 Alide2_3650 Alide2_3650 Alide2_3650 3799149 3801104 - TonB-dependent receptor plug PFAM: TonB-dependent receptor%2C plug%3B TonB-dependent receptor%2C beta-barrel~KEGG: dia:Dtpsy_2686 TonB-dependent receptor plug gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3650 Alide2_3651 Alide2_3651 Alide2_3651 3801424 3802593 - NnrS family protein PFAM: NnrS~KEGG: dia:Dtpsy_2680 NnrS family protein gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3651 Alide2_3652 Alide2_3652 Alide2_3652 3802715 3803575 - Taurine-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_2681 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3652 Alide2_3653 Alide2_3653 Alide2_3653 3803595 3804401 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: dia:Dtpsy_2682 binding-protein-dependent transport systems inner membrane component gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3653 Alide2_3654 Alide2_3654 Alide2_3654 3804398 3805414 - putative periplasmic component of ABC-type transport system KEGG: dia:Dtpsy_2687 putative periplasmic component of ABC-type transport system gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3654 Alide2_3655 Alide2_3655 Alide2_3655 3805416 3807569 - TonB-dependent receptor PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug~KEGG: dia:Dtpsy_2688 TonB-dependent receptor gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3655 Alide2_3656 Alide2_3656 Alide2_3656 3807645 3808376 + transcriptional regulator%2C Crp/Fnr family KEGG: dia:Dtpsy_2689 transcriptional regulator%2C Crp/Fnr family~PFAM: Cyclic nucleotide-binding domain~SMART: Cyclic nucleotide-binding domain%3B HTH transcriptional regulator%2C Crp gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3656 Alide2_3657 Alide2_3657 Alide2_3657 3808412 3808771 + hypothetical protein KEGG: ajs:Ajs_3342 hypothetical protein gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3657 Alide2_3658 Alide2_3658 Alide2_3658 3808851 3809336 + protein of unknown function DUF461 PFAM: DR1885-like metal-binding protein~KEGG: dia:Dtpsy_2691 protein of unknown function DUF461 gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3658 Alide2_3659 Alide2_3659 Alide2_3659 3809524 3810756 + drug resistance transporter%2C Bcr/CflA subfamily KEGG: ajs:Ajs_3344 Bcr/CflA subfamily drug resistance transporter~TIGRFAM: Drug resistance transporter Bcr/CflA subfamily~PFAM: Major facilitator superfamily MFS-1 gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3659 Alide2_3660 Alide2_3660 Alide2_3660 3810779 3811621 - hypothetical protein KEGG: vap:Vapar_0607 hypothetical protein gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3660 Alide2_3661 Alide2_3661 Alide2_3661 3811671 3811967 - YCII-related protein PFAM: YCII-related~KEGG: cti:RALTA_B1424 YciI-like protein gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3661 Alide2_3662 Alide2_3662 Alide2_3662 3812006 3812989 - putative NagM-like protein KEGG: reh:PHG396 putative NagM-like protein gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3662 Alide2_3663 Alide2_3663 Alide2_3663 3813218 3813907 + 3-oxoacid CoA-transferase%2C A subunit SMART: Coenzyme A transferase~TIGRFAM: 3-oxoacid CoA-transferase%2C subunit A~KEGG: rpf:Rpic12D_2066 3-oxoacid CoA-transferase%2C A subunit~PFAM: Coenzyme A transferase gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3663 Alide2_3664 Alide2_3664 Alide2_3664 3813904 3814557 + 3-oxoacid CoA-transferase%2C B subunit SMART: Coenzyme A transferase~TIGRFAM: 3-oxoacid CoA-transferase%2C subunit B~KEGG: lch:Lcho_0832 3-oxoacid CoA-transferase%2C B subunit~PFAM: Coenzyme A transferase gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3664 Alide2_3665 Alide2_3665 Alide2_3665 3814603 3814881 + muconolactone delta-isomerase TIGRFAM: Muconolactone delta-isomerase~KEGG: mno:Mnod_2374 muconolactone delta-isomerase~PFAM: Muconolactone delta-isomerase gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3665 Alide2_3666 Alide2_3666 Alide2_3666 3814895 3815788 + beta-lactamase domain protein KEGG: reu:Reut_A1508 beta-lactamase-like~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3666 Alide2_3667 Alide2_3667 Alide2_3667 3815755 3816681 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: reu:Reut_A1507 regulatory protein%2C LysR:LysR%2C substrate-binding gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3667 Alide2_3668 Alide2_3668 Alide2_3668 3816854 3817738 + hypothetical protein KEGG: vap:Vapar_0607 hypothetical protein gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3668 Alide2_3669 Alide2_3669 Alide2_3669 3817745 3819208 - diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted~KEGG: aav:Aave_1895 diguanylate cyclase~SMART: Diguanylate cyclase%2C predicted gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3669 Alide2_3670 Alide2_3670 Alide2_3670 3819329 3821101 - DEAD/DEAH box helicase domain protein KEGG: dia:Dtpsy_2693 DEAD/DEAH box helicase domain protein~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3670 Alide2_3671 Alide2_3671 Alide2_3671 3821368 3822501 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: vap:Vapar_5221 extracellular ligand-binding receptor gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3671 Alide2_3672 Alide2_3672 Alide2_3672 3822625 3823236 - Exonuclease RNase T and DNA polymerase III KEGG: dia:Dtpsy_2694 oligoribonuclease~PFAM: Exonuclease%2C RNase T/DNA polymerase III~SMART: Exonuclease gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3672 Alide2_3673 Alide2_3673 Alide2_3673 3823256 3824548 + Ste24 endopeptidase KEGG: dia:Dtpsy_2695 STE24 endopeptidase~PFAM: Peptidase M48 gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3673 Alide2_3674 Alide2_3674 Alide2_3674 3824545 3824883 + pterin-4-alpha-carbinolamine dehydratase manually curated~HAMAP: Transcriptional coactivator/pterin dehydratase~KEGG: dia:Dtpsy_2696 transcriptional coactivator/pterin dehydratase~PFAM: Transcriptional coactivator/pterin dehydratase gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3674 Alide2_3675 Alide2_3675 Alide2_3675 3824893 3825864 + ribosome small subunit-dependent GTPase A KEGG: dia:Dtpsy_2697 ribosome small subunit-dependent GTPase A~TIGRFAM: Ribosome biogenesis GTPase RsgA%2C putative~PFAM: Ribosome biogenesis GTPase RsgA%2C putative gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3675 Alide2_3676 Alide2_3676 Alide2_3676 3825879 3827537 + sulphate transporter PFAM: Sulphate transporter%3B Sulphate transporter/antisigma-factor antagonist STAS~KEGG: axy:AXYL_00922 permease family protein 1 gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3676 Alide2_3677 Alide2_3677 Alide2_3677 3827544 3828626 - histidinol-phosphate aminotransferase TIGRFAM: Histidinol-phosphate aminotransferase~KEGG: vap:Vapar_1479 histidinol-phosphate aminotransferase~PFAM: Aminotransferase%2C class I/classII gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3677 Alide2_3678 Alide2_3678 Alide2_3678 3828702 3829691 - cobalamin biosynthesis protein CbiB PFAM: Cobalamin biosynthesis CobD/CbiB~KEGG: dia:Dtpsy_2698 cobalamin biosynthesis protein CbiB gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3678 Alide2_3679 Alide2_3679 Alide2_3679 3829738 3830421 - NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: ajs:Ajs_3351 NUDIX hydrolase gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3679 Alide2_3680 Alide2_3680 Alide2_3680 3830532 3830918 - ribosomal protein L19 KEGG: dac:Daci_5342 ribosomal protein L19~TIGRFAM: Ribosomal protein L19~PFAM: Ribosomal protein L19 gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3680 Alide2_3681 Alide2_3681 Alide2_3681 3831038 3831805 - tRNA (guanine-N(1)-)-methyltransferase PFAM: tRNA (guanine-N1-)-methyltransferase~TIGRFAM: tRNA (guanine-N1-)-methyltransferase%2C bacteria~HAMAP: tRNA (guanine-N1-)-methyltransferase%2C bacteria~KEGG: ajs:Ajs_3353 tRNA (guanine-N(1)-)-methyltransferase gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3681 Alide2_3682 Alide2_3682 Alide2_3682 3831813 3832385 - 16S rRNA processing protein RimM KEGG: dia:Dtpsy_2702 16S rRNA-processing protein RimM~TIGRFAM: 16S rRNA processing protein RimM~PFAM: RimM protein%3B PRC-barrel gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3682 Alide2_3683 Alide2_3683 Alide2_3683 3832479 3832733 - ribosomal protein S16 KEGG: dia:Dtpsy_2703 30S ribosomal protein S16~TIGRFAM: Ribosomal protein S16~PFAM: Ribosomal protein S16 gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3683 Alide2_3684 Alide2_3684 Alide2_3684 3832850 3833377 + Phosphinothricin acetyltransferase KEGG: dia:Dtpsy_2704 GCN5-related N-acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3684 Alide2_3685 Alide2_3685 Alide2_3685 3833400 3833846 + hypothetical protein KEGG: dia:Dtpsy_2705 hypothetical protein gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3685 Alide2_3686 Alide2_3686 Alide2_3686 3833900 3834910 - phosphate transporter PFAM: Phosphate transporter~KEGG: dia:Dtpsy_2706 phosphate transporter gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3686 Alide2_3687 Alide2_3687 Alide2_3687 3834931 3835578 - putative phosphate transport regulator PFAM: Putitive phosphate transport regulator~KEGG: dia:Dtpsy_2707 protein of unknown function DUF47 gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3687 Alide2_3688 Alide2_3688 Alide2_3688 3835818 3836414 + OmpA domain-containing protein KEGG: aav:Aave_1879 OmpA domain-containing protein gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3688 Alide2_3689 Alide2_3689 Alide2_3689 3836453 3836818 - protein of unknown function DUF486 PFAM: Protein of unknown function DUF486~KEGG: dia:Dtpsy_2708 protein of unknown function DUF486 gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3689 Alide2_3690 Alide2_3690 Alide2_3690 3836911 3837639 - Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: ajs:Ajs_3361 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3690 Alide2_3691 Alide2_3691 Alide2_3691 3837643 3838425 - Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_2710 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3691 Alide2_3692 Alide2_3692 Alide2_3692 3838447 3839523 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dia:Dtpsy_2711 inner-membrane translocator gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3692 Alide2_3693 Alide2_3693 Alide2_3693 3839540 3840469 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dia:Dtpsy_2712 inner-membrane translocator gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3693 Alide2_3694 Alide2_3694 Alide2_3694 3840668 3841987 - AAA ATPase central domain protein KEGG: xtr:100494158 replication-associated recombination protein A-like~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3694 Alide2_3695 Alide2_3695 Alide2_3695 3841984 3842982 - integron integrase KEGG: dia:Dtpsy_2714 integron integrase~TIGRFAM: Integrase%2C integron-type~PFAM: Integrase%2C catalytic core%2C phage gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3695 Alide2_3696 Alide2_3696 Alide2_3696 3843159 3843521 + Cupin 2 conserved barrel domain protein KEGG: syc:syc1951_c hypothetical protein~manually curated~PFAM: Cupin 2%2C conserved barrel gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3696 Alide2_3697 Alide2_3697 Alide2_3697 3843954 3844841 + PDZ/DHR/GLGF domain protein KEGG: pen:PSEEN2126 hypothetical protein~PFAM: PDZ/DHR/GLGF~SMART: PDZ/DHR/GLGF gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3697 Alide2_3698 Alide2_3698 Alide2_3698 3844911 3845588 + HNH endonuclease KEGG: hch:HCH_04433 restriction endonuclease~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3698 Alide2_3699 Alide2_3699 Alide2_3699 3845653 3845898 + protein of unknown function DUF1010 KEGG: dia:Dtpsy_2715 protein of unknown function DUF1010~manually curated~PFAM: Protein of unknown function DUF1010 gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3699 Alide2_3700 Alide2_3700 Alide2_3700 3845923 3846939 + hypothetical protein KEGG: has:Halsa_0231 hypothetical protein gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3700 Alide2_3701 Alide2_3701 Alide2_3701 3847009 3847551 + hypothetical protein manually curated~KEGG: vex:VEA_003218 hypothetical protein gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3701 Alide2_3702 Alide2_3702 Alide2_3702 3847685 3848518 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: tin:Tint_1916 integrase catalytic region gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3702 Alide2_3703 Alide2_3703 Alide2_3703 3848551 3848817 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3703 Alide2_3704 Alide2_3704 Alide2_3704 3849536 3850252 + hypothetical protein KEGG: bcm:Bcenmc03_4077 hypothetical protein gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3704 Alide2_3705 Alide2_3705 Alide2_3705 3850685 3850990 + Protein of unknown function DUF2091%2C periplasmic PFAM: Protein of unknown function DUF2091%2C periplasmic~KEGG: ctt:CtCNB1_3965 hypothetical protein gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3705 Alide2_3706 Alide2_3706 Alide2_3706 3851119 3851253 + hypothetical protein gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3706 Alide2_3707 Alide2_3707 Alide2_3707 3851250 3851840 + uracil-DNA glycosylase superfamily KEGG: dia:Dtpsy_2718 uracil-DNA glycosylase superfamily gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3707 Alide2_3708 Alide2_3708 Alide2_3708 3851863 3852819 + UbiA prenyltransferase PFAM: UbiA prenyltransferase~KEGG: eba:ebA3963 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3708 Alide2_3709 Alide2_3709 Alide2_3709 3852823 3853455 - Outer-membrane lipoprotein carrier protein TIGRFAM: Outer membrane lipoprotein carrier protein LolA%2C Proteobacteria~HAMAP: Outer membrane lipoprotein carrier protein LolA%2C Proteobacteria~KEGG: ajs:Ajs_3381 outer membrane lipoprotein carrier protein LolA~PFAM: Outer membrane lipoprotein carrier protein LolA gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3709 Alide2_3710 Alide2_3710 Alide2_3710 3853467 3855803 - cell division protein FtsK/SpoIIIE KEGG: ajs:Ajs_3382 DNA translocase FtsK~PFAM: Cell divisionFtsK/SpoIIIE%3B DNA translocase FtsK gamma~SMART: DNA translocase FtsK gamma gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3710 Alide2_3711 Alide2_3711 Alide2_3711 3855948 3856898 + thioredoxin reductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~manually curated~KEGG: dia:Dtpsy_2721 thioredoxin reductase~TIGRFAM: Thioredoxin reductase gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3711 Alide2_3712 Alide2_3712 Alide2_3712 3857050 3857283 + 50S ribosomal protein L28 TIGRFAM: Ribosomal protein L28~HAMAP: Ribosomal protein L28~KEGG: ctt:CtCNB1_0883 ribosomal protein L28~PFAM: Ribosomal protein L28 gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3712 Alide2_3713 Alide2_3713 Alide2_3713 3857304 3857474 + ribosomal protein L33 KEGG: dia:Dtpsy_2723 50S ribosomal protein L33~TIGRFAM: Ribosomal protein L33~PFAM: Ribosomal protein L33 gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3713 Alide2_3714 Alide2_3714 Alide2_3714 3857586 3858905 - Fmu (Sun) domain protein PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p~KEGG: aav:Aave_3433 Fmu (Sun) domain-containing protein gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3714 Alide2_3715 Alide2_3715 Alide2_3715 3859021 3859602 - phosphoribosylglycinamide formyltransferase TIGRFAM: Phosphoribosylglycinamide formyltransferase~KEGG: dac:Daci_5372 phosphoribosylglycinamide formyltransferase~PFAM: Formyl transferase%2C N-terminal gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3715 Alide2_3716 Alide2_3716 Alide2_3716 3859623 3860312 + UPF0502 protein yceH KEGG: ctt:CtCNB1_0874 hypothetical protein~HAMAP: Protein of unknown function DUF480~PFAM: Protein of unknown function DUF480 gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3716 Alide2_3717 Alide2_3717 Alide2_3717 3860358 3861539 + acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain~KEGG: dia:Dtpsy_2731 acyl-CoA dehydrogenase domain protein gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3717 Alide2_3718 Alide2_3718 Alide2_3718 3861554 3862669 + acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C type 1~KEGG: dia:Dtpsy_2732 acyl-CoA dehydrogenase domain protein gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3718 Alide2_3719 Alide2_3719 Alide2_3719 3862724 3863281 - HNH endonuclease KEGG: dia:Dtpsy_2733 HNH endonuclease~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3719 Alide2_3720 Alide2_3720 Alide2_3720 3863435 3864481 + riboflavin biosynthesis protein RibF SMART: Riboflavin kinase~TIGRFAM: Riboflavin kinase/FAD synthetase~KEGG: ajs:Ajs_3398 bifunctional riboflavin kinase/FMN adenylyltransferase~PFAM: FAD synthetase%3B Riboflavin kinase gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3720 Alide2_3721 Alide2_3721 Alide2_3721 3864572 3867427 + Isoleucyl-tRNA synthetase TIGRFAM: Isoleucyl-tRNA synthetase%2C class Ia~HAMAP: Isoleucyl-tRNA synthetase%2C class Ia~KEGG: dia:Dtpsy_2735 isoleucyl-tRNA synthetase gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3721 Alide2_3722 Alide2_3722 Alide2_3722 3867427 3867924 + lipoprotein signal peptidase TIGRFAM: Peptidase A8%2C signal peptidase II~KEGG: dia:Dtpsy_2736 lipoprotein signal peptidase~PFAM: Peptidase A8%2C signal peptidase II gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3722 Alide2_3723 Alide2_3723 Alide2_3723 3868017 3869039 + transcriptional regulator%2C LacI family KEGG: vap:Vapar_1266 transcriptional regulator%2C LacI family~PFAM: Periplasmic binding protein/LacI transcriptional regulator%3B HTH transcriptional regulator%2C LacI~SMART: HTH transcriptional regulator%2C LacI gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3723 Alide2_3724 Alide2_3724 Alide2_3724 3869079 3870092 + extracellular solute-binding protein family 1 PFAM: Bacterial extracellular solute-binding%2C family 1~KEGG: vap:Vapar_1265 extracellular solute-binding protein family 1 gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3724 Alide2_3725 Alide2_3725 Alide2_3725 3870089 3870898 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: vap:Vapar_1264 binding-protein-dependent transport systems inner membrane component gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3725 Alide2_3726 Alide2_3726 Alide2_3726 3870924 3871724 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: vap:Vapar_1263 binding-protein-dependent transport systems inner membrane component gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3726 Alide2_3727 Alide2_3727 Alide2_3727 3871714 3872775 + Polyamine-transporting ATPase PFAM: ABC transporter-like%3B Transport-associated OB%2C type 2~KEGG: vap:Vapar_1262 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3727 Alide2_3728 Alide2_3728 Alide2_3728 3872772 3873611 + metallophosphoesterase PFAM: Metallo-dependent phosphatase~KEGG: vap:Vapar_1261 metallophosphoesterase gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3728 Alide2_3729 Alide2_3729 Alide2_3729 3873634 3875301 + Na/Pi-cotransporter II-related protein KEGG: aav:Aave_3461 Na/Pi-cotransporter II-related protein~TIGRFAM: Na/Pi co-transporter II-related~PFAM: Na/Pi-cotransporter%3B PhoU gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3729 Alide2_3730 Alide2_3730 Alide2_3730 3875311 3876276 - Bile acid:sodium symporter PFAM: Bile acid:sodium symporter~KEGG: dia:Dtpsy_2738 hypothetical protein gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3730 Alide2_3731 Alide2_3731 Alide2_3731 3876382 3877323 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_3178 LysR family transcriptional regulator gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3731 Alide2_3732 Alide2_3732 Alide2_3732 3877277 3878095 - NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: ajs:Ajs_3404 NUDIX hydrolase gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3732 Alide2_3733 Alide2_3733 Alide2_3733 3878092 3879078 - NADPH:quinone reductase PFAM: Alcohol dehydrogenase%2C C-terminal%3B Alcohol dehydrogenase GroES-like~KEGG: dia:Dtpsy_2740 alcohol dehydrogenase zinc-binding domain protein~SMART: Polyketide synthase%2C enoylreductase gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3733 Alide2_3734 Alide2_3734 Alide2_3734 3879184 3880086 + protein of unknown function DUF6 transmembrane KEGG: ajs:Ajs_3406 hypothetical protein~manually curated~PFAM: Drug/metabolite transporter gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3734 Alide2_3735 Alide2_3735 Alide2_3735 3880109 3882772 - diguanylate cyclase/phosphodiesterase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted~KEGG: dia:Dtpsy_2742 diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3735 Alide2_3736 Alide2_3736 Alide2_3736 3882769 3883836 - Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3736 Alide2_3737 Alide2_3737 Alide2_3737 3883836 3884666 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: dia:Dtpsy_2744 short-chain dehydrogenase/reductase SDR gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3737 Alide2_3738 Alide2_3738 Alide2_3738 3884868 3886379 - protein of unknown function DUF112 transmembrane PFAM: Protein of unknown function DUF112%2C transmembrane~KEGG: ajs:Ajs_3411 hypothetical protein gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3738 Alide2_3739 Alide2_3739 Alide2_3739 3886396 3886884 - hypothetical protein KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468 gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3739 Alide2_3740 Alide2_3740 Alide2_3740 3887015 3888781 - type II secretion system protein E KEGG: dia:Dtpsy_2747 type II secretion system protein E~PFAM: Type II secretion system protein E%3B General secretory system II%2C protein E%2C N-terminal~SMART: ATPase%2C AAA+ type%2C core gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3740 Alide2_3741 Alide2_3741 Alide2_3741 3888786 3889547 - hypothetical protein KEGG: dia:Dtpsy_2748 hypothetical protein gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3741 Alide2_3742 Alide2_3742 Alide2_3742 3889544 3890068 - hypothetical protein KEGG: dia:Dtpsy_2749 hypothetical protein gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3742 Alide2_3743 Alide2_3743 Alide2_3743 3890143 3890988 - TatD-related deoxyribonuclease PFAM: Deoxyribonuclease%2C TatD-related~KEGG: ajs:Ajs_3416 TatD-related deoxyribonuclease gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3743 Alide2_3744 Alide2_3744 Alide2_3744 3890999 3891196 - Protein of unknown function DUF2892 PFAM: Protein of unknown function DUF2892~KEGG: dia:Dtpsy_2751 hypothetical protein gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3744 Alide2_3745 Alide2_3745 Alide2_3745 3891226 3891534 - transcriptional regulator%2C ArsR family KEGG: dia:Dtpsy_2752 transcriptional regulator%2C TrmB~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3745 Alide2_3746 Alide2_3746 Alide2_3746 3891679 3892041 + alkylhydroperoxidase like protein%2C AhpD family KEGG: dia:Dtpsy_2753 alkylhydroperoxidase like protein%2C AhpD family~TIGRFAM: Alkylhydroperoxidase AhpD core~PFAM: Carboxymuconolactone decarboxylase gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3746 Alide2_3747 Alide2_3747 Alide2_3747 3892146 3893045 + peptidase S1 and S6 chymotrypsin/Hap PFAM: Peptidase S1/S6%2C chymotrypsin/Hap~KEGG: aav:Aave_1064 peptidase S1 and S6%2C chymotrypsin/Hap gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3747 Alide2_3748 Alide2_3748 Alide2_3748 3893060 3894091 + ATPase associated with various cellular activities AAA_3 PFAM: ATPase%2C AAA-3~KEGG: aav:Aave_1063 ATPase gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3748 Alide2_3749 Alide2_3749 Alide2_3749 3894084 3895052 + protein of unknown function DUF58 PFAM: Domain of unknown function DUF58~KEGG: aav:Aave_1062 hypothetical protein gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3749 Alide2_3750 Alide2_3750 Alide2_3750 3895085 3896131 + von Willebrand factor type A KEGG: aav:Aave_1061 von Willebrand factor%2C type A~PFAM: von Willebrand factor%2C type A~SMART: von Willebrand factor%2C type A gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3750 Alide2_3751 Alide2_3751 Alide2_3751 3896246 3898243 - acetate/CoA ligase TIGRFAM: Acetate-CoA ligase~KEGG: aav:Aave_1499 acetyl-coenzyme A synthetase~PFAM: AMP-dependent synthetase/ligase gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3751 Alide2_3752 Alide2_3752 Alide2_3752 3898897 3900201 + glycine betaine/L-proline ABC transporter%2C ATPase subunit SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit~KEGG: ajs:Ajs_1065 glycine betaine/L-proline ABC transporter%2C ATPase subunit~PFAM: ABC transporter-like%3B Cystathionine beta-synthase%2C core gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3752 Alide2_3753 Alide2_3753 Alide2_3753 3900198 3901310 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: dia:Dtpsy_0980 binding-protein-dependent transport systems inner membrane component gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3753 Alide2_3754 Alide2_3754 Alide2_3754 3901386 3902396 + ABC-type glycine betaine transport%2C periplasmic subunit PFAM: ABC-type glycine betaine transport system%2C substrate-binding domain~KEGG: dia:Dtpsy_0979 glycine betaine transporter periplasmic subunit gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3754 Alide2_3755 Alide2_3755 Alide2_3755 3902583 3903365 + transcriptional regulator%2C Crp/Fnr family KEGG: dia:Dtpsy_0976 transcriptional regulator%2C Crp/Fnr family~PFAM: Cyclic nucleotide-binding domain~SMART: Cyclic nucleotide-binding domain gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3755 Alide2_3756 Alide2_3756 Alide2_3756 3903366 3904751 - fumarate hydratase%2C class II TIGRFAM: Fumarate hydratase%2C class II~KEGG: aav:Aave_1491 fumarate hydratase~PFAM: Lyase 1%2C N-terminal%3B Fumarase C%2C C-terminal gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3756 Alide2_3757 Alide2_3757 Alide2_3757 3904920 3906479 + hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C alpha subunit KEGG: dac:Daci_2654 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha~TIGRFAM: Fe-S hydro-lyase%2C tartrate dehydratase alpha-type%2C catalytic domain%3B Fe-S hydro-lyase%2C tartrate dehydratase beta-type%2C catalytic domain~PFAM: Fe-S hydro-lyase%2C tartrate dehydratase beta-type%2C catalytic domain%3B Fe-S hydro-lyase%2C tartrate dehydratase alpha-type%2C catalytic domain gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3757 Alide2_3758 Alide2_3758 Alide2_3758 3906422 3906838 + hypothetical protein KEGG: mno:Mnod_4051 hypothetical protein gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3758 Alide2_3759 Alide2_3759 Alide2_3759 3906848 3908269 - peptidase U62 modulator of DNA gyrase PFAM: Peptidase U62%2C modulator of DNA gyrase~KEGG: dia:Dtpsy_0971 peptidase U62 modulator of DNA gyrase gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3759 Alide2_3760 Alide2_3760 Alide2_3760 3908352 3909020 + Uncharacterized protein family UPF0307 PFAM: Ribosome-associated%2C YjgA~KEGG: dia:Dtpsy_0970 protein of unknown function DUF615 gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3760 Alide2_3761 Alide2_3761 Alide2_3761 3909017 3909613 + molybdenum cofactor synthesis domain protein TIGRFAM: Molybdenum cofactor synthesis~PFAM: Molybdopterin binding~KEGG: ajs:Ajs_1051 molybdopterin adenylyltransferase~SMART: Molybdopterin binding gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3761 Alide2_3762 Alide2_3762 Alide2_3762 3909706 3910803 + Alcohol dehydrogenase (NADP(+)) PFAM: Alcohol dehydrogenase%2C C-terminal%3B Alcohol dehydrogenase GroES-like~KEGG: dia:Dtpsy_0967 alcohol dehydrogenase zinc-binding domain protein~SMART: Polyketide synthase%2C enoylreductase gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3762 Alide2_3763 Alide2_3763 Alide2_3763 3910819 3911481 - nitroreductase PFAM: Nitroreductase-like~KEGG: dia:Dtpsy_0966 nitroreductase gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3763 Alide2_3764 Alide2_3764 Alide2_3764 3911548 3912339 - serine O-acetyltransferase KEGG: xtr:100496826 serine acetyltransferase-like~TIGRFAM: Serine O-acetyltransferase gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3764 Alide2_3765 Alide2_3765 Alide2_3765 3912377 3913189 - RNA methyltransferase%2C TrmH family%2C group 1 KEGG: ajs:Ajs_1046 RNA methyltransferase~TIGRFAM: RNA methyltransferase TrmH%2C group 1~PFAM: tRNA/rRNA methyltransferase%2C SpoU gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3765 Alide2_3766 Alide2_3766 Alide2_3766 3913319 3914272 + Inositol-phosphate phosphatase KEGG: dia:Dtpsy_0963 inositol-phosphate phosphatase~PFAM: Inositol monophosphatase gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3766 Alide2_3767 Alide2_3767 Alide2_3767 3914614 3915228 + Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter%2C DctQ component~KEGG: ctt:CtCNB1_3517 tripartite ATP-independent periplasmic protein gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3767 Alide2_3768 Alide2_3768 Alide2_3768 3915247 3917073 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: dia:Dtpsy_0958 TRAP dicarboxylate transporter%2C DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3768 Alide2_3769 Alide2_3769 Alide2_3769 3917208 3921905 + DEAD/H associated domain protein KEGG: gdi:GDI_2676 putative ATP-dependent helicase Lhr~PFAM: DEAD/H associated%3B DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3769 Alide2_3770 Alide2_3770 Alide2_3770 3921985 3923067 - Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: ctt:CtCNB1_3520 twin-arginine translocation pathway signal gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3770 Alide2_3771 Alide2_3771 Alide2_3771 3923195 3925087 - deoxyxylulose-5-phosphate synthase SMART: Transketolase-like%2C pyrimidine-binding domain~TIGRFAM: Deoxyxylulose-5-phosphate synthase~KEGG: dia:Dtpsy_0956 1-deoxy-D-xylulose-5-phosphate synthase~PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal%3B Dehydrogenase%2C E1 component gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3771 Alide2_3772 Alide2_3772 Alide2_3772 3925162 3926055 - Polyprenyl synthetase PFAM: Polyprenyl synthetase~KEGG: dia:Dtpsy_0955 polyprenyl synthetase gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3772 Alide2_3773 Alide2_3773 Alide2_3773 3926055 3926297 - exodeoxyribonuclease VII%2C small subunit KEGG: ajs:Ajs_1036 exodeoxyribonuclease VII%2C small subunit~TIGRFAM: Exonuclease VII%2C small subunit~PFAM: Exonuclease VII%2C small subunit gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3773 Alide2_3774 Alide2_3774 Alide2_3774 3926573 3927712 + Rieske (2Fe-2S) iron-sulfur domain protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain-containing protein gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3774 Alide2_3775 Alide2_3775 Alide2_3775 3927806 3928717 + putative transmembrane protein KEGG: dia:Dtpsy_0952 putative transmembrane protein gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3775 Alide2_3776 Alide2_3776 Alide2_3776 3928771 3929670 + 3-mercaptopyruvate sulfurtransferase PFAM: Rhodanese-like~KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase~SMART: Rhodanese-like gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3776 Alide2_3777 Alide2_3777 Alide2_3777 3929876 3931312 - Aldehyde Dehydrogenase PFAM: Aldehyde dehydrogenase domain~KEGG: dia:Dtpsy_0944 aldehyde dehydrogenase gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3777 Alide2_3778 Alide2_3778 Alide2_3778 3931550 3933940 - DNA internalization-related competence protein ComEC/Rec2 TIGRFAM: Competence protein ComEC/Rec2%3B ComEC/Rec2-related protein~PFAM: ComEC/Rec2-related protein%3B Beta-lactamase-like~KEGG: dia:Dtpsy_0933 DNA internalization-related competence protein ComEC/Rec2~SMART: Beta-lactamase-like gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3778 Alide2_3779 Alide2_3779 Alide2_3779 3934046 3934504 + Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: ajs:Ajs_1018 endoribonuclease L-PSP gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3779 Alide2_3780 Alide2_3780 Alide2_3780 3934612 3936954 - DNA topoisomerase IV%2C A subunit SMART: DNA topoisomerase%2C type IIA%2C subunit A/C-terminal~TIGRFAM: DNA topoisomerase IV%2C subunit A%2C Gram-negative~KEGG: ajs:Ajs_1016 DNA topoisomerase IV subunit A~PFAM: DNA topoisomerase%2C type IIA%2C subunit A/C-terminal%3B DNA gyrase/topoisomerase IV%2C subunit A%2C C-terminal beta-pinwheel gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3780 Alide2_3781 Alide2_3781 Alide2_3781 3937010 3938986 - DNA topoisomerase (ATP-hydrolyzing) PFAM: DNA topoisomerase%2C type IIA%2C subunit B%2C domain 2%3B ATPase-like%2C ATP-binding domain%3B DNA topoisomerase%2C type IIA%2C subunit B%2C C-terminal~KEGG: dia:Dtpsy_0928 DNA topoisomerase IV subunit B~SMART: DNA topoisomerase%2C type IIA%2C subunit B/N-terminal%3B ATPase-like%2C ATP-binding domain gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3781 Alide2_3782 Alide2_3782 Alide2_3782 3939082 3940299 + major facilitator superfamily MFS_1 KEGG: dia:Dtpsy_0927 major facilitator superfamily MFS_1~manually curated~PFAM: Major facilitator superfamily MFS-1 gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3782 Alide2_3783 Alide2_3783 Alide2_3783 3940304 3940432 + hypothetical protein KEGG: ajs:Ajs_1012 hypothetical protein gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3783 Alide2_3784 Alide2_3784 Alide2_3784 3940432 3940962 + Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: dia:Dtpsy_0925 methyltransferase type 12 gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3784 Alide2_3785 Alide2_3785 Alide2_3785 3940971 3941867 + Dihydrodipicolinate synthase PFAM: Dihydrodipicolinate synthetase~TIGRFAM: Dihydrodipicolinate synthase subfamily~HAMAP: Dihydrodipicolinate synthase~KEGG: dia:Dtpsy_0924 dihydrodipicolinate synthase gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3785 Alide2_3786 Alide2_3786 Alide2_3786 3941902 3942990 + NlpBDapX family lipoprotein PFAM: Lipoprotein%2C NlpB~KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3786 Alide2_3787 Alide2_3787 Alide2_3787 3943556 3944053 - hypothetical protein KEGG: dia:Dtpsy_0921 hypothetical protein gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3787 Alide2_3788 Alide2_3788 Alide2_3788 3944070 3945194 - Cupin%2C JmjC-type KEGG: dia:Dtpsy_0920 cupin 4 family protein~PFAM: Cupin%2C JmjC-type~SMART: Transcription factor jumonji/aspartyl beta-hydroxylase gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3788 Alide2_3789 Alide2_3789 Alide2_3789 3945248 3945772 + peptidylprolyl isomerase FKBP-type PFAM: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase gene gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3789 Alide2_3790 Alide2_3790 Alide2_3790 3945779 3946225 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut TIGRFAM: DeoxyUTP pyrophosphatase~KEGG: xtr:100496823 deoxyuridine 5'-triphosphate nucleotidohydrolase-like~PFAM: DeoxyUTP pyrophosphatase domain gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3790 Alide2_3791 Alide2_3791 Alide2_3791 3946294 3946695 - hypothetical protein gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3791 Alide2_3792 Alide2_3792 Alide2_3792 3946692 3947918 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase~KEGG: dia:Dtpsy_0916 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase~PFAM: DNA/pantothenate metabolism flavoprotein%2C C-terminal%3B Flavoprotein gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3792 Alide2_3793 Alide2_3793 Alide2_3793 3947994 3949643 + CTP synthase PFAM: CTP synthase%2C N-terminal%3B Glutamine amidotransferase class-I%2C C-terminal~TIGRFAM: CTP synthase~HAMAP: CTP synthase~KEGG: dia:Dtpsy_0915 CTP synthetase gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3793 Alide2_3794 Alide2_3794 Alide2_3794 3949649 3950506 + 2-dehydro-3-deoxyphosphooctonate aldolase TIGRFAM: 3-deoxy-8-phosphooctulonate synthase~KEGG: dac:Daci_5106 2-dehydro-3-deoxyphosphooctonate aldolase~PFAM: DAHP synthetase I/KDSA gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3794 Alide2_3795 Alide2_3795 Alide2_3795 3950509 3950799 + protein of unknown function DUF1330 PFAM: Protein of unknown function DUF1330~KEGG: dac:Daci_5107 hypothetical protein gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3795 Alide2_3796 Alide2_3796 Alide2_3796 3950982 3952268 + enolase TIGRFAM: Enolase~KEGG: xtr:100496359 enolase-like~PFAM: Enolase%2C C-terminal%3B Enolase%2C N-terminal gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3796 Alide2_3797 Alide2_3797 Alide2_3797 3952296 3952583 + Septum formation initiator PFAM: Septum formation initiator~KEGG: dia:Dtpsy_0911 septum formation initiator gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3797 Alide2_3798 Alide2_3798 Alide2_3798 3952653 3953432 - Sulfate-transporting ATPase PFAM: ABC transporter-like~KEGG: rfr:Rfer_1521 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3798 Alide2_3799 Alide2_3799 Alide2_3799 3953443 3954156 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: rfr:Rfer_1523 amino acid ABC transporter permease~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3799 Alide2_3800 Alide2_3800 Alide2_3800 3954153 3954842 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: rfr:Rfer_1524 amino acid ABC transporter permease~TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM domain%2C His/Glu/Gln/Arg/opine family~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3800 Alide2_3801 Alide2_3801 Alide2_3801 3954873 3955634 - ABC-type transporter%2C periplasmic subunit family 3 KEGG: xtr:100498246 histidine-binding periplasmic protein-like~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3801 Alide2_3802 Alide2_3802 Alide2_3802 3955699 3956685 - Hsp33 protein PFAM: Heat shock protein Hsp33 protein~KEGG: ajs:Ajs_0994 HSP33 protein gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3802 Alide2_3803 Alide2_3803 Alide2_3803 3956695 3957219 - transferase hexapeptide protein KEGG: ajs:Ajs_0993 transferase hexapeptide protein gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3803 Alide2_3804 Alide2_3804 Alide2_3804 3957269 3958075 + protein of unknown function DUF455 KEGG: dia:Dtpsy_0907 protein of unknown function DUF455~manually curated~PFAM: Protein of unknown function DUF455 gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3804 Alide2_3805 Alide2_3805 Alide2_3805 3958164 3959432 + diguanylate phosphodiesterase metal dependent hydrolase domain protein KEGG: dia:Dtpsy_0906 diguanylate phosphodiesterase~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Metal-dependent hydrolase HDOD~SMART: Diguanylate phosphodiesterase%2C EAL domain gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3805 Alide2_3806 Alide2_3806 Alide2_3806 3959470 3960756 + diguanylate phosphodiesterase metal dependent hydrolase domain protein KEGG: dia:Dtpsy_0905 diguanylate phosphodiesterase~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Metal-dependent hydrolase HDOD~SMART: Diguanylate phosphodiesterase%2C EAL domain gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3806 Alide2_3807 Alide2_3807 Alide2_3807 3960776 3961759 - hypothetical protein KEGG: ajs:Ajs_0989 hypothetical protein gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3807 Alide2_3808 Alide2_3808 Alide2_3808 3962031 3963092 + PAS sensor protein KEGG: ctt:CtCNB1_2005 methyl-accepting chemotaxis sensory transducer~TIGRFAM: PAS~PFAM: PAS fold-3 gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3808 Alide2_3809 Alide2_3809 Alide2_3809 3963496 3964194 + transcriptional regulator%2C HxlR family PFAM: Helix-turn-helix%2C HxlR type~KEGG: mlo:mlr1855 hypothetical protein gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3809 Alide2_3810 Alide2_3810 Alide2_3810 3964197 3964745 - crossover junction endodeoxyribonuclease RuvC TIGRFAM: Crossover junction endodeoxyribonuclease RuvC~KEGG: dia:Dtpsy_2968 Holliday junction resolvase~PFAM: Crossover junction endodeoxyribonuclease RuvC gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3810 Alide2_3811 Alide2_3811 Alide2_3811 3965098 3965364 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ctt:CtCNB1_1899 transposase IS3/IS911 gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3811 Alide2_3812 Alide2_3812 Alide2_3812 3965382 3966194 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: ajs:Ajs_3784 integrase catalytic subunit gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3812 Alide2_3813 Alide2_3813 Alide2_3813 3966348 3966674 - hemagglutinin-related protein KEGG: rso:RSc1775 hemagglutinin-related protein gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3813 Alide2_3814 Alide2_3814 Alide2_3814 3966698 3967414 - Monofunctional biosynthetic peptidoglycan transglycosylase TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase~HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase~KEGG: ajs:Ajs_3657 monofunctional biosynthetic peptidoglycan transglycosylase~PFAM: Glycosyl transferase%2C family 51 gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3814 Alide2_3815 Alide2_3815 Alide2_3815 3967428 3968276 - shikimate 5-dehydrogenase KEGG: ajs:Ajs_3656 shikimate 5-dehydrogenase~TIGRFAM: Shikimate dehydrogenase~PFAM: Shikimate dehydrogenase substrate binding%2C N-terminal%3B Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3815 Alide2_3816 Alide2_3816 Alide2_3816 3968283 3969143 - TonB family protein TIGRFAM: TonB%2C C-terminal~KEGG: ajs:Ajs_3655 TonB family protein gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3816 Alide2_3817 Alide2_3817 Alide2_3817 3969153 3971231 - ribonuclease II KEGG: ajs:Ajs_3654 ribonuclease II~PFAM: Ribonuclease II/R~SMART: Ribonuclease II/R gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3817 Alide2_3818 Alide2_3818 Alide2_3818 3971355 3972098 + RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: dia:Dtpsy_2963 RNA polymerase%2C sigma-24 subunit%2C ECF subfamily~TIGRFAM: RNA polymerase sigma-70~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma factor 70%2C region 4 type 2 gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3818 Alide2_3819 Alide2_3819 Alide2_3819 3972187 3972768 + hypothetical protein KEGG: ajs:Ajs_3652 hypothetical protein gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3819 Alide2_3820 Alide2_3820 Alide2_3820 3972765 3973178 + cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: dia:Dtpsy_2961 cytochrome c class I gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3820 Alide2_3821 Alide2_3821 Alide2_3821 3973328 3974887 + O-antigen polymerase PFAM: O-antigen ligase-related~KEGG: dia:Dtpsy_2960 O-antigen polymerase gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3821 Alide2_3822 Alide2_3822 Alide2_3822 3974990 3975577 - protein of unknown function UPF0227 PFAM: Uncharacterised protein family UPF0227/Esterase YqiA~KEGG: ajs:Ajs_3649 hypothetical protein gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3822 Alide2_3823 Alide2_3823 Alide2_3823 3975613 3976794 + rod shape-determining protein RodA KEGG: dia:Dtpsy_2957 rod shape-determining protein RodA~TIGRFAM: Rod shape-determining protein RodA~PFAM: Cell cycle protein gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3823 Alide2_3824 Alide2_3824 Alide2_3824 3976833 3978293 + peptidase U62 modulator of DNA gyrase PFAM: Peptidase U62%2C modulator of DNA gyrase~KEGG: dia:Dtpsy_2956 peptidase U62 modulator of DNA gyrase gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3824 Alide2_3825 Alide2_3825 Alide2_3825 3978535 3979653 + phospho-2-dehydro-3-deoxyheptonate aldolase TIGRFAM: DHAP synthase%2C class 1~KEGG: dia:Dtpsy_2954 phospho-2-dehydro-3-deoxyheptonate aldolase~PFAM: DAHP synthetase I/KDSA gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3825 Alide2_3826 Alide2_3826 Alide2_3826 3979739 3980050 + hypothetical protein KEGG: dia:Dtpsy_2953 hypothetical protein gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3826 Alide2_3827 Alide2_3827 Alide2_3827 3980098 3981540 - UDP-N-acetylmuramate TIGRFAM: Murein peptide ligase~KEGG: ajs:Ajs_3642 UDP-N-acetylmuramate~PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3827 Alide2_3828 Alide2_3828 Alide2_3828 3981584 3982219 + hypothetical protein KEGG: ajs:Ajs_3641 hypothetical protein gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3828 Alide2_3829 Alide2_3829 Alide2_3829 3982216 3982791 + Redoxin domain protein PFAM: Redoxin~KEGG: dia:Dtpsy_2950 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3829 Alide2_3830 Alide2_3830 Alide2_3830 3982902 3983360 + acetyl-CoA carboxylase%2C biotin carboxyl carrier protein KEGG: dia:Dtpsy_2949 acetyl-CoA carboxylase%2C biotin carboxyl carrier protein~TIGRFAM: Acetyl-CoA biotin carboxyl carrier~PFAM: Biotin/lipoyl attachment gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3830 Alide2_3831 Alide2_3831 Alide2_3831 3983376 3984725 + acetyl-CoA carboxylase%2C biotin carboxylase SMART: Biotin carboxylase%2C C-terminal~TIGRFAM: Acetyl-CoA carboxylase%2C biotin carboxylase~KEGG: ajs:Ajs_3638 acetyl-CoA carboxylase%2C biotin carboxylase~PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Biotin carboxylase%2C C-terminal%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3831 Alide2_3832 Alide2_3832 Alide2_3832 3984818 3985714 + Ribosomal protein L11 methyltransferase TIGRFAM: Ribosomal protein L11 methyltransferase~HAMAP: Ribosomal protein L11 methyltransferase~KEGG: ajs:Ajs_3637 ribosomal protein L11 methyltransferase~PFAM: Ribosomal L11 methyltransferase%2C PrmA gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3832 Alide2_3833 Alide2_3833 Alide2_3833 3985768 3986922 + MJ0042 family finger-like protein KEGG: dia:Dtpsy_2946 MJ0042 family finger-like protein~TIGRFAM: Zinc finger/thioredoxin putative~PFAM: Protein of unknown function DUF3426 gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3833 Alide2_3834 Alide2_3834 Alide2_3834 3986957 3987859 + Adenosine kinase KEGG: dia:Dtpsy_2945 PfkB domain protein~PFAM: Carbohydrate/purine kinase gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3834 Alide2_3835 Alide2_3835 Alide2_3835 3987942 3988490 - histone protein KEGG: dia:Dtpsy_2944 histone protein gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3835 Alide2_3836 Alide2_3836 Alide2_3836 3988670 3989860 - Ribonucleoside-diphosphate reductase KEGG: dia:Dtpsy_2943 ribonucleotide-diphosphate reductase subunit beta~PFAM: Ribonucleotide reductase gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3836 Alide2_3837 Alide2_3837 Alide2_3837 3989999 3992911 - ribonucleoside-diphosphate reductase%2C alpha subunit KEGG: ajs:Ajs_3632 ribonucleotide-diphosphate reductase subunit alpha~TIGRFAM: Ribonucleoside-diphosphate reductase%2C alpha subunit~PFAM: Ribonucleotide reductase large subunit%2C C-terminal%3B Ribonucleotide reductase large subunit%2C N-terminal%3B ATP-cone gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3837 Alide2_3838 Alide2_3838 Alide2_3838 3993196 3993777 - N-acetylmuramyl-L-alanine amidase%2C negative regulator of AmpC%2C AmpD KEGG: dia:Dtpsy_2941 N-acetyl-anhydromuranmyl-L-alanine amidase~PFAM: N-acetylmuramoyl-L-alanine amidase%2C family 2~SMART: N-acetylmuramoyl-L-alanine amidase%2C family 2 gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3838 Alide2_3839 Alide2_3839 Alide2_3839 3993761 3995251 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family KEGG: dia:Dtpsy_2940 two component%2C sigma54 specific%2C transcriptional regulator%2C fis family~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver domain%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver domain%3B ATPase%2C AAA+ type%2C core gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3839 Alide2_3840 Alide2_3840 Alide2_3840 3995268 3996971 - integral membrane sensor signal transduction histidine kinase KEGG: dia:Dtpsy_2939 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3840 Alide2_3841 Alide2_3841 Alide2_3841 3996984 3997211 - hypothetical protein KEGG: dia:Dtpsy_2938 hypothetical protein gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3841 Alide2_3842 Alide2_3842 Alide2_3842 3997208 3998005 - cytochrome c assembly protein PFAM: Cytochrome c assembly protein~KEGG: dia:Dtpsy_2937 cytochrome c assembly protein gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3842 Alide2_3843 Alide2_3843 Alide2_3843 3998095 3999474 + signal recognition particle protein TIGRFAM: Signal recognition particle%2C SRP~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle%3B Signal recognition particle%2C SRP54 subunit%2C M-domain~KEGG: ajs:Ajs_3626 signal recognition particle subunit FFH/SRP54 (SRP54)~SMART: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle%3B ATPase%2C AAA+ type%2C core gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3843 Alide2_3844 Alide2_3844 Alide2_3844 3999519 4000868 - RNA modification enzyme%2C MiaB family TIGRFAM: Methylthiotransferase%3B tRNA-i(6)A37 modification enzyme MiaB~PFAM: Radical SAM%3B Methylthiotransferase%2C N-terminal%3B Deoxyribonuclease/rho motif-related TRAM~KEGG: dia:Dtpsy_2935 (dimethylallyl)adenosine tRNA methylthiotransferase~SMART: Elongator protein 3/MiaB/NifB gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3844 Alide2_3845 Alide2_3845 Alide2_3845 4000936 4001337 - hypothetical protein KEGG: aav:Aave_0876 hypothetical protein gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3845 Alide2_3846 Alide2_3846 Alide2_3846 4001521 4002299 - pseudogene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3846 Alide2_3847 Alide2_3847 Alide2_3847 4002357 4004138 - peptidase M61 domain protein PFAM: Peptidase M61~KEGG: ajs:Ajs_3622 peptidase M61 domain-containing protein gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3847 Alide2_3848 Alide2_3848 Alide2_3848 4004283 4005002 - disulfide bond isomerase%2C DsbC/G PFAM: Disulphide bond isomerase%2C DsbC/G%2C N-terminal~KEGG: ajs:Ajs_3621 thiol:disulfide interchange protein DsbC gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3848 Alide2_3849 Alide2_3849 Alide2_3849 4005046 4006176 - Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family KEGG: ajs:Ajs_3620 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase~TIGRFAM: Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6~PFAM: Monooxygenase%2C FAD-binding%3B FAD dependent oxidoreductase gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3849 Alide2_3850 Alide2_3850 Alide2_3850 4006318 4007412 + GTP-binding protein YchF KEGG: dia:Dtpsy_2928 GTP-binding protein YchF~TIGRFAM: Conserved hypothetical protein CHP00092~PFAM: Domain of unknown function DUF933%3B GTP-binding protein%2C HSR1-related gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3850 Alide2_3851 Alide2_3851 Alide2_3851 4007631 4007843 + integrase KEGG: pap:PSPA7_5324 integrase gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3851 Alide2_3852 Alide2_3852 Alide2_3852 4007909 4008175 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3852 Alide2_3853 Alide2_3853 Alide2_3853 4008208 4008450 + hypothetical protein KEGG: pna:Pnap_4649 IS1477 transposase gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3853 Alide2_3854 Alide2_3854 Alide2_3854 4008505 4008933 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: rfr:Rfer_2709 transposase IS3/IS911 gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3854 Alide2_3855 Alide2_3855 Alide2_3855 4008930 4009262 + IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2-like~KEGG: rfr:Rfer_2710 IS66 Orf2 like gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3855 Alide2_3856 Alide2_3856 Alide2_3856 4009345 4010859 + transposase IS66 PFAM: Transposase%2C IS66~KEGG: dia:Dtpsy_2523 transposase IS66 gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3856 Alide2_3857 Alide2_3857 Alide2_3857 4010906 4011499 - pseudogene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3857 Alide2_3858 Alide2_3858 Alide2_3858 4011492 4013018 - integrase catalytic subunit KEGG: bvi:Bcep1808_2622 integrase catalytic subunit gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3858 Alide2_3859 Alide2_3859 Alide2_3859 4013090 4013341 + pseudogene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3859 Alide2_3860 Alide2_3860 Alide2_3860 4013366 4015165 + Butyryl-CoA dehydrogenase KEGG: dar:Daro_1555 acyl-CoA dehydrogenase%2C C-terminal:acyl-CoA dehydrogenase%2C central region~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3860 Alide2_3861 Alide2_3861 Alide2_3861 4015456 4016091 - DSBA oxidoreductase PFAM: DSBA-like thioredoxin domain~KEGG: bpl:BURPS1106A_A3104 thioredoxin domain-containing protein gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3861 Alide2_3862 Alide2_3862 Alide2_3862 4016088 4017341 - major facilitator superfamily MFS_1 KEGG: app:CAP2UW1_0749 drug resistance transporter%2C Bcr/CflA subfamily~manually curated~PFAM: Major facilitator superfamily MFS-1 gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3862 Alide2_3863 Alide2_3863 Alide2_3863 4017341 4017895 - protein of unknown function DUF1234 PFAM: Protein of unknown function DUF1234~KEGG: bge:BC1002_3447 protein of unknown function DUF1234 gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3863 Alide2_3864 Alide2_3864 Alide2_3864 4017920 4019224 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: bph:Bphy_7178 major facilitator transporter gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3864 Alide2_3865 Alide2_3865 Alide2_3865 4019329 4020390 - protein of unknown function DUF849 PFAM: Protein of unknown function DUF849%2C prokaryotic~KEGG: reu:Reut_A0020 hypothetical protein gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3865 Alide2_3866 Alide2_3866 Alide2_3866 4020473 4021330 - Taurine dioxygenase KEGG: bph:Bphy_7176 taurine dioxygenase~PFAM: Taurine catabolism dioxygenase TauD/TfdA gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3866 Alide2_3867 Alide2_3867 Alide2_3867 4021344 4022324 - NADPH:quinone reductase PFAM: Alcohol dehydrogenase%2C C-terminal%3B Alcohol dehydrogenase GroES-like~KEGG: reu:Reut_A2148 zinc-containing alcohol dehydrogenase superfamily protein~SMART: Polyketide synthase%2C enoylreductase gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3867 Alide2_3868 Alide2_3868 Alide2_3868 4022351 4023370 - UspA domain-containing protein PFAM: UspA%3B Haemerythrin/HHE cation-binding motif~KEGG: reu:Reut_B3843 hypothetical protein gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3868 Alide2_3869 Alide2_3869 Alide2_3869 4023407 4023715 - Rieske (2Fe-2S) iron-sulfur domain protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: bge:BC1002_3448 Rieske (2Fe-2S) iron-sulfur domain protein gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3869 Alide2_3870 Alide2_3870 Alide2_3870 4023876 4026611 + ATP-dependent transcriptional regulator%2C MalT-like%2C LuxR family KEGG: reu:Reut_B3844 regulatory protein%2C LuxR~PFAM: Transcription regulator LuxR%2C C-terminal~SMART: Transcription regulator LuxR%2C C-terminal gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3870 Alide2_3871 Alide2_3871 Alide2_3871 4026834 4028570 + protein of unknown function DUF1302 PFAM: Protein of unknown function DUF1302~KEGG: lch:Lcho_2162 hypothetical protein gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3871 Alide2_3872 Alide2_3872 Alide2_3872 4028582 4029931 + protein of unknown function DUF1329 PFAM: Protein of unknown function DUF1329~KEGG: lch:Lcho_2163 hypothetical protein gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3872 Alide2_3873 Alide2_3873 Alide2_3873 4030158 4031231 + glycosyl hydrolase KEGG: psa:PST_0617 glycosyl hydrolase gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3873 Alide2_3874 Alide2_3874 Alide2_3874 4031257 4033737 + transporter%2C putative KEGG: psa:PST_0618 transporter%2C putative gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3874 Alide2_3875 Alide2_3875 Alide2_3875 4033783 4034793 + Uncharacterized protein family UPF0324 PFAM: Uncharacterised protein family UPF0324%2C prokaryote~KEGG: dac:Daci_1990 hypothetical protein gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3875 Alide2_3876 Alide2_3876 Alide2_3876 4034851 4035016 - pseudogene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3876 Alide2_3877 Alide2_3877 Alide2_3877 4035147 4035656 - hypothetical protein KEGG: dia:Dtpsy_2910 hypothetical protein gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3877 Alide2_3878 Alide2_3878 Alide2_3878 4035805 4036863 + TIM-barrel protein%2C nifR3 family KEGG: dia:Dtpsy_2909 TIM-barrel protein%2C nifR3 family~TIGRFAM: tRNA-dihydrouridine synthase%2C TIM-barrel%2C NifR3~PFAM: tRNA-dihydrouridine synthase gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3878 Alide2_3879 Alide2_3879 Alide2_3879 4036841 4037077 + transcriptional regulator%2C Fis family PFAM: Helix-turn-helix%2C Fis-type~KEGG: dia:Dtpsy_2908 transcriptional regulator%2C fis family gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3879 Alide2_3880 Alide2_3880 Alide2_3880 4037159 4038757 + Bifunctional purine biosynthesis protein purH KEGG: dia:Dtpsy_2907 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase~PFAM: AICARFT/IMPCHase bienzyme%2C transformylase domain%3B Methylglyoxal synthase-like domain~TIGRFAM: AICARFT/IMPCHase bienzyme~HAMAP: AICARFT/IMPCHase bienzyme~SMART: AICARFT/IMPCHase bienzyme%2C transformylase domain%3B Methylglyoxal synthase-like domain gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3880 Alide2_3881 Alide2_3881 Alide2_3881 4038861 4040165 - glutamate-1-semialdehyde-2%2C1-aminomutase TIGRFAM: Tetrapyrrole biosynthesis%2C glutamate-1-semialdehyde aminotransferase~KEGG: dia:Dtpsy_2904 glutamate-1-semialdehyde aminotransferase~PFAM: Aminotransferase class-III gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3881 Alide2_3882 Alide2_3882 Alide2_3882 4040149 4041051 - Phosphomethylpyrimidine kinase type-1 PFAM: Phosphomethylpyrimidine kinase type-1~KEGG: dia:Dtpsy_2903 phosphomethylpyrimidine kinase type-1 gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3882 Alide2_3883 Alide2_3883 Alide2_3883 4041191 4041364 + Rubredoxin-type Fe(Cys)4 protein KEGG: aav:Aave_0900 rubredoxin-type Fe(Cys)4 protein~manually curated~PFAM: Rubredoxin-type Fe(Cys)4 protein gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3883 Alide2_3884 Alide2_3884 Alide2_3884 4041416 4041820 + response regulator receiver protein KEGG: aav:Aave_0901 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3884 Alide2_3885 Alide2_3885 Alide2_3885 4041820 4042185 + response regulator receiver protein KEGG: dia:Dtpsy_2900 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3885 Alide2_3886 Alide2_3886 Alide2_3886 4042202 4042729 + CheW protein KEGG: ajs:Ajs_3576 putative CheW protein~PFAM: CheW-like protein~SMART: CheW-like protein gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3886 Alide2_3887 Alide2_3887 Alide2_3887 4042750 4045014 + methyl-accepting chemotaxis sensory transducer KEGG: dia:Dtpsy_2898 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3887 Alide2_3888 Alide2_3888 Alide2_3888 4045058 4050901 + CheA signal transduction histidine kinase KEGG: dia:Dtpsy_2897 CheA signal transduction histidine kinase~PFAM: Signal transduction response regulator%2C receiver domain%3B ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain%3B Signal transduction histidine kinase%2C subgroup%2C homodimeric%3B CheW-like protein~SMART: Signal transduction response regulator%2C receiver domain%3B ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain%3B CheW-like protein gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3888 Alide2_3889 Alide2_3889 Alide2_3889 4050990 4051622 + UPF0301 protein yqgE manually curated~HAMAP: Protein of unknown function DUF179~KEGG: dia:Dtpsy_2896 protein of unknown function DUF179~PFAM: Protein of unknown function DUF179 gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3889 Alide2_3890 Alide2_3890 Alide2_3890 4051619 4052038 + Holliday junction resolvase SMART: Resolvase%2C RNase H-like fold~TIGRFAM: Resolvase%2C holliday junction-type%2C YqgF-like~KEGG: dia:Dtpsy_2895 Holliday junction resolvase-like protein~HAMAP: Resolvase%2C holliday junction-type%2C YqgF-like~PFAM: Resolvase%2C holliday junction-type%2C YqgF-like gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3890 Alide2_3891 Alide2_3891 Alide2_3891 4052035 4052571 + Uracil phosphoribosyltransferase KEGG: dia:Dtpsy_2894 phosphoribosyltransferase~PFAM: Phosphoribosyltransferase gene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3891 Alide2_3892 Alide2_3892 Alide2_3892 4052574 4053536 + Aspartate carbamoyltransferase PFAM: Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding domain%3B Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding~TIGRFAM: Aspartate carbamoyltransferase%2C eukaryotic~HAMAP: Aspartate carbamoyltransferase%2C eukaryotic~KEGG: dia:Dtpsy_2893 aspartate carbamoyltransferase catalytic subunit gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3892 Alide2_3893 Alide2_3893 Alide2_3893 4053604 4054899 + Allantoinase KEGG: dia:Dtpsy_2892 amidohydrolase~PFAM: Amidohydrolase 1 gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3893 Alide2_3894 Alide2_3894 Alide2_3894 4054910 4055650 + phospholipid/glycerol acyltransferase KEGG: dia:Dtpsy_2891 phospholipid/glycerol acyltransferase~PFAM: Phospholipid/glycerol acyltransferase~SMART: Phospholipid/glycerol acyltransferase gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3894 Alide2_3895 Alide2_3895 Alide2_3895 4055653 4056717 - Fe(3+)-transporting ATPase PFAM: ABC transporter-like%3B Transport-associated OB%2C type 2~KEGG: ajs:Ajs_3566 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3895 Alide2_3896 Alide2_3896 Alide2_3896 4056765 4058450 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: ajs:Ajs_3565 binding-protein-dependent transport systems inner membrane component gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3896 Alide2_3897 Alide2_3897 Alide2_3897 4058466 4058816 + arsenate reductase KEGG: ajs:Ajs_3564 arsenate reductase~TIGRFAM: Arsenate reductase~PFAM: Arsenate reductase-like gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3897 Alide2_3898 Alide2_3898 Alide2_3898 4058883 4060403 + protease Do SMART: PDZ/DHR/GLGF~TIGRFAM: Peptidase S1C%2C Do~KEGG: aav:Aave_3965 protease Do~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3898 Alide2_3899 Alide2_3899 Alide2_3899 4060432 4061100 + two component transcriptional regulator%2C winged helix family KEGG: vap:Vapar_2384 two component transcriptional regulator%2C winged helix family~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3899 Alide2_3900 Alide2_3900 Alide2_3900 4061097 4062473 + integral membrane sensor signal transduction histidine kinase KEGG: aav:Aave_3963 integral membrane sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B HAMP linker domain gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3900 Alide2_3901 Alide2_3901 Alide2_3901 4062470 4063873 + cardiolipin synthetase 2 KEGG: ajs:Ajs_3563 cardiolipin synthetase 2 gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3901 Alide2_3902 Alide2_3902 Alide2_3902 4063889 4065817 - Ferredoxin--NAD(+) reductase KEGG: app:CAP2UW1_1324 oxidoreductase FAD-binding domain protein~PFAM: Oxidoreductase%2C FAD-binding domain%3B Ferredoxin%3B Cytochrome b/b6%2C N-terminal%3B Oxidoreductase FAD/NAD(P)-binding gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3902 Alide2_3903 Alide2_3903 Alide2_3903 4065814 4067262 - putative cytochrome c oxidase%2C subunit I KEGG: app:CAP2UW1_3424 putative cytochrome c oxidase%2C subunit I gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3903 Alide2_3904 Alide2_3904 Alide2_3904 4067259 4067762 - hypothetical protein KEGG: app:CAP2UW1_1325 hypothetical protein gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3904 Alide2_3905 Alide2_3905 Alide2_3905 4067759 4069342 - methyl-viologen-reducing hydrogenase delta subunit PFAM: Methyl-viologen-reducing hydrogenase%2C delta subunit%3B 4Fe-4S binding domain~KEGG: app:CAP2UW1_1327 methyl-viologen-reducing hydrogenase delta subunit gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3905 Alide2_3906 Alide2_3906 Alide2_3906 4069357 4070214 - electron transport protein SCO1/SenC PFAM: Copper chaperone SCO1/SenC~KEGG: app:CAP2UW1_1788 electron transport protein SCO1/SenC gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3906 Alide2_3907 Alide2_3907 Alide2_3907 4070232 4071134 - Protoheme IX farnesyltransferase TIGRFAM: Protohaem IX farnesyltransferase~HAMAP: Protohaem IX farnesyltransferase~KEGG: app:CAP2UW1_1789 protoheme IX farnesyltransferase~PFAM: UbiA prenyltransferase gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3907 Alide2_3908 Alide2_3908 Alide2_3908 4071152 4072852 - Cytochrome-c oxidase KEGG: app:CAP2UW1_1790 cytochrome c oxidase subunit I~PFAM: Cytochrome c oxidase%2C subunit I gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3908 Alide2_3909 Alide2_3909 Alide2_3909 4072866 4073405 - cytochrome c oxidase subunit II PFAM: Cytochrome c oxidase subunit II C-terminal~KEGG: app:CAP2UW1_1791 cytochrome c oxidase subunit II gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3909 Alide2_3910 Alide2_3910 Alide2_3910 4073419 4073571 - hypothetical protein KEGG: mag:amb2220 hypothetical protein gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3910 Alide2_3911 Alide2_3911 Alide2_3911 4073838 4074737 + cytochrome oxidase assembly PFAM: Heme A synthase/Protoheme IX farnesyltransferase~KEGG: avn:Avin_00950 cytochrome oxidase assembly protein gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3911 Alide2_3912 Alide2_3912 Alide2_3912 4074947 4079035 - protein of unknown function DUF490 PFAM: Protein of unknown function DUF490~KEGG: ajs:Ajs_3561 hypothetical protein gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3912 Alide2_3913 Alide2_3913 Alide2_3913 4079141 4081036 - surface antigen (D15) PFAM: Bacterial surface antigen (D15)~KEGG: dia:Dtpsy_2883 surface antigen (D15) gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3913 Alide2_3914 Alide2_3914 Alide2_3914 4081041 4082228 - hypothetical protein KEGG: ajs:Ajs_3559 hypothetical protein gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3914 Alide2_3915 Alide2_3915 Alide2_3915 4082303 4083652 - MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: nmg:Nmag_3457 MmgE/PrpD family protein gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3915 Alide2_3916 Alide2_3916 Alide2_3916 4083637 4084419 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: pzu:PHZ_c3022 enoyl-CoA hydratase/isomerase family protein gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3916 Alide2_3917 Alide2_3917 Alide2_3917 4084432 4085592 - Butyryl-CoA dehydrogenase KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3917 Alide2_3918 Alide2_3918 Alide2_3918 4085609 4086805 - Formyl-CoA transferase KEGG: sti:Sthe_3003 formyl-CoA transferase~PFAM: CoA-transferase family III gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3918 Alide2_3919 Alide2_3919 Alide2_3919 4086813 4087592 - transcriptional regulator%2C GntR family with UTRA sensor domain KEGG: bpy:Bphyt_0617 transcriptional regulator%2C GntR family~PFAM: HTH transcriptional regulator%2C GntR%3B UbiC transcription regulator-associated~SMART: HTH transcriptional regulator%2C GntR%3B UbiC transcription regulator-associated gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3919 Alide2_3920 Alide2_3920 Alide2_3920 4087853 4088866 + hypothetical protein KEGG: cti:RALTA_B1738 conserved hypothetical protein%3B UPF0065 gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3920 Alide2_3921 Alide2_3921 Alide2_3921 4088882 4089481 - GCN5-related N-acetyltransferase KEGG: dia:Dtpsy_2881 GCN5-related N-acetyltransferase gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3921 Alide2_3922 Alide2_3922 Alide2_3922 4089493 4090335 - AAA ATPase central domain protein KEGG: ajs:Ajs_3556 ATPase central domain-containing protein~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3922 Alide2_3923 Alide2_3923 Alide2_3923 4090456 4091115 + cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: dia:Dtpsy_2878 cytochrome c class I gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3923 Alide2_3924 Alide2_3924 Alide2_3924 4091562 4092443 + UspA domain-containing protein PFAM: UspA~KEGG: ajs:Ajs_3554 UspA domain-containing protein gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3924 Alide2_3925 Alide2_3925 Alide2_3925 4092378 4092812 - Domain of unknown function DUF1841 PFAM: Protein of unknown function DUF1841~KEGG: ajs:Ajs_3553 hypothetical protein gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3925 Alide2_3926 Alide2_3926 Alide2_3926 4092823 4093626 - transcriptional regulator%2C IclR family TIGRFAM: Beta-ketoadipate transcriptional regulator%2C PcaR/PcaU/PobR~PFAM: Transcription regulator IclR%2C C-terminal%3B Transcription regulator IclR%2C N-terminal~KEGG: dia:Dtpsy_2874 transcriptional regulator%2C IclR family~SMART: Transcription regulator IclR%2C N-terminal gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3926 Alide2_3927 Alide2_3927 Alide2_3927 4093729 4094424 + 3-oxoacid CoA-transferase%2C A subunit SMART: Coenzyme A transferase~TIGRFAM: 3-oxoacid CoA-transferase%2C subunit A~KEGG: dia:Dtpsy_2873 3-oxoacid CoA-transferase%2C A subunit~PFAM: Coenzyme A transferase gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3927 Alide2_3928 Alide2_3928 Alide2_3928 4094447 4095091 + 3-oxoacid CoA-transferase%2C B subunit SMART: Coenzyme A transferase~TIGRFAM: 3-oxoacid CoA-transferase%2C subunit B~KEGG: dia:Dtpsy_2872 3-oxoacid CoA-transferase%2C B subunit~PFAM: Coenzyme A transferase gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3928 Alide2_3929 Alide2_3929 Alide2_3929 4095169 4096371 + beta-ketoadipyl CoA thiolase TIGRFAM: Beta-ketoadipyl CoA thiolase%3B Thiolase~KEGG: dac:Daci_5563 beta-ketoadipyl CoA thiolase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3929 Alide2_3930 Alide2_3930 Alide2_3930 4096433 4097158 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: aav:Aave_3940 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3930 Alide2_3931 Alide2_3931 Alide2_3931 4097203 4098195 + hypothetical protein KEGG: dia:Dtpsy_2869 hypothetical protein gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3931 Alide2_3932 Alide2_3932 Alide2_3932 4098368 4098529 - pseudogene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3932 Alide2_3933 Alide2_3933 Alide2_3933 4098577 4099401 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding~KEGG: rec:RHECIAT_CH0001484 putative transcriptional regulator protein%2C LysR family gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3933 Alide2_3934 Alide2_3934 Alide2_3934 4099446 4100075 + putative secreted protein KEGG: bpt:Bpet0051 putative secreted protein gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3934 Alide2_3935 Alide2_3935 Alide2_3935 4100089 4101276 + amidohydrolase TIGRFAM: Peptidase M20D%2C amidohydrolase~KEGG: bph:Bphy_3769 amidohydrolase~PFAM: Peptidase M20 gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3935 Alide2_3936 Alide2_3936 Alide2_3936 4101390 4102385 - hypothetical protein KEGG: vap:Vapar_4972 hypothetical protein gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3936 Alide2_3937 Alide2_3937 Alide2_3937 4102412 4103371 - hypothetical protein KEGG: vap:Vapar_4085 hypothetical protein gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3937 Alide2_3938 Alide2_3938 Alide2_3938 4103368 4104801 - MmgE/PrpD family protein PFAM: MmgE/PrpD~KEGG: vei:Veis_4268 MmgE/PrpD family protein gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3938 Alide2_3939 Alide2_3939 Alide2_3939 4104806 4105984 - PrpF protein PFAM: PrpF protein~KEGG: cak:Caul_0497 hypothetical protein gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3939 Alide2_3940 Alide2_3940 Alide2_3940 4105996 4106997 - hypothetical protein KEGG: pol:Bpro_2294 hypothetical protein gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3940 Alide2_3941 Alide2_3941 Alide2_3941 4107020 4107652 - 3-isopropylmalate dehydratase%2C small subunit KEGG: cak:Caul_0508 isopropylmalate isomerase small subunit~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit~PFAM: Aconitase A/isopropylmalate dehydratase small subunit%2C swivel gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3941 Alide2_3942 Alide2_3942 Alide2_3942 4107655 4109064 - 3-isopropylmalate dehydratase%2C large subunit KEGG: bja:bll0416 isopropylmalate isomerase large subunit~TIGRFAM: 3-isopropylmalate dehydratase%2C large subunit~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3942 Alide2_3943 Alide2_3943 Alide2_3943 4109072 4109935 - Carboxyvinyl-carboxyphosphonate phosphorylmutase KEGG: cak:Caul_0509 carboxyvinyl-carboxyphosphonate phosphorylmutase~PFAM: Isocitrate lyase/phosphorylmutase gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3943 Alide2_3944 Alide2_3944 Alide2_3944 4110099 4110893 + transcriptional regulator%2C GntR family with UTRA sensor domain KEGG: mav:MAV_1744 transcriptional regulator%2C GntR family protein~PFAM: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR~SMART: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3944 Alide2_3945 Alide2_3945 Alide2_3945 4110948 4112798 - potassium efflux system protein KEGG: dia:Dtpsy_2868 glutathione-regulated potassium-efflux system protein KefC~TIGRFAM: K+/H+ exchanger~PFAM: Cation/H+ exchanger%3B Regulator of K+ conductance%2C N-terminal gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3945 Alide2_3946 Alide2_3946 Alide2_3946 4112917 4113555 + Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: ajs:Ajs_3544 lysine exporter protein LysE/YggA gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3946 Alide2_3947 Alide2_3947 Alide2_3947 4113635 4114255 + Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: dia:Dtpsy_2866 cobyrinic acid ac-diamide synthase gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3947 Alide2_3948 Alide2_3948 Alide2_3948 4114335 4114658 - hypothetical protein KEGG: aav:Aave_3912 hypothetical protein gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3948 Alide2_3949 Alide2_3949 Alide2_3949 4114885 4115808 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: aav:Aave_3911 LysR family transcriptional regulator gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3949 Alide2_3950 Alide2_3950 Alide2_3950 4115805 4116281 - tRNA/rRNA methyltransferase (SpoU) PFAM: tRNA/rRNA methyltransferase%2C SpoU~KEGG: dia:Dtpsy_2864 tRNA/rRNA methyltransferase (SpoU) gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3950 Alide2_3951 Alide2_3951 Alide2_3951 4116336 4117073 - phosphoribosyltransferase PFAM: Phosphoribosyltransferase~KEGG: ajs:Ajs_3540 ComF family protein gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3951 Alide2_3952 Alide2_3952 Alide2_3952 4117109 4118017 + biotin synthesis protein BioC KEGG: ajs:Ajs_3539 biotin synthesis protein BioC gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3952 Alide2_3953 Alide2_3953 Alide2_3953 4118469 4119632 + cytochrome c oxidase%2C subunit II KEGG: dia:Dtpsy_2860 cytochrome c oxidase%2C subunit II~TIGRFAM: Cytochrome c oxidase%2C subunit II~PFAM: Cytochrome c oxidase subunit II C-terminal%3B Cytochrome C oxidase subunit II%2C transmembrane domain%3B Cytochrome c%2C class I gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3953 Alide2_3954 Alide2_3954 Alide2_3954 4119670 4121301 + cytochrome c oxidase%2C subunit I KEGG: ajs:Ajs_3536 cytochrome-c oxidase~TIGRFAM: Cytochrome c oxidase%2C subunit I bacterial type~PFAM: Cytochrome c oxidase%2C subunit I gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3954 Alide2_3955 Alide2_3955 Alide2_3955 4121319 4121435 + hypothetical protein gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3955 Alide2_3956 Alide2_3956 Alide2_3956 4121451 4122074 + cytochrome c oxidase assembly protein CtaG/Cox11 PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11~KEGG: dia:Dtpsy_2857 cytochrome c oxidase assembly protein gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3956 Alide2_3957 Alide2_3957 Alide2_3957 4122074 4122286 + Protein of unknown function DUF2970 PFAM: Protein of unknown function DUF2970~KEGG: dia:Dtpsy_2856 hypothetical protein gene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3957 Alide2_3958 Alide2_3958 Alide2_3958 4122346 4123230 + cytochrome c oxidase subunit III PFAM: Cytochrome c oxidase%2C subunit III~KEGG: dia:Dtpsy_2855 cytochrome c oxidase subunit III gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3958 Alide2_3959 Alide2_3959 Alide2_3959 4123304 4123537 - putative transmembrane protein KEGG: ajs:Ajs_3531 putative transmembrane protein gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3959 Alide2_3960 Alide2_3960 Alide2_3960 4123544 4124311 + putative transmembrane cytochrome oxidase KEGG: dia:Dtpsy_2853 putative transmembrane cytochrome oxidase gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3960 Alide2_3961 Alide2_3961 Alide2_3961 4124253 4125008 + hypothetical protein KEGG: ajs:Ajs_3529 hypothetical protein gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3961 Alide2_3962 Alide2_3962 Alide2_3962 4125005 4126162 + cytochrome oxidase assembly PFAM: Heme A synthase/Protoheme IX farnesyltransferase~KEGG: ajs:Ajs_3528 cytochrome oxidase assembly gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3962 Alide2_3963 Alide2_3963 Alide2_3963 4126159 4127085 + protoheme IX farnesyltransferase KEGG: dia:Dtpsy_2850 protoheme IX farnesyltransferase~TIGRFAM: Protohaem IX farnesyltransferase~PFAM: UbiA prenyltransferase gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3963 Alide2_3964 Alide2_3964 Alide2_3964 4127143 4127706 + electron transport protein SCO1/SenC PFAM: Copper chaperone SCO1/SenC~KEGG: dia:Dtpsy_2849 electron transport protein SCO1/SenC gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3964 Alide2_3965 Alide2_3965 Alide2_3965 4127740 4128750 - hypothetical protein KEGG: dia:Dtpsy_2846 hypothetical protein gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3965 Alide2_3966 Alide2_3966 Alide2_3966 4128893 4129828 - RNA polymerase%2C sigma 32 subunit%2C RpoH KEGG: dia:Dtpsy_2845 RNA polymerase%2C sigma 32 subunit%2C RpoH~TIGRFAM: RNA polymerase sigma factor RpoH%2C proteobacteria%3B RNA polymerase sigma-70~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 4%3B RNA polymerase sigma-70 region 1.2 gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3966 Alide2_3967 Alide2_3967 Alide2_3967 4130722 4132236 - transposase IS66 PFAM: Transposase%2C IS66~KEGG: dia:Dtpsy_2523 transposase IS66 gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3967 Alide2_3968 Alide2_3968 Alide2_3968 4132319 4132651 - IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2-like~KEGG: rfr:Rfer_2710 IS66 Orf2 like gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3968 Alide2_3969 Alide2_3969 Alide2_3969 4132648 4133076 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: rfr:Rfer_2709 transposase IS3/IS911 gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3969 Alide2_3970 Alide2_3970 Alide2_3970 4133131 4133373 - hypothetical protein KEGG: pna:Pnap_4649 IS1477 transposase gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3970 Alide2_3971 Alide2_3971 Alide2_3971 4133406 4133672 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3971 Alide2_3972 Alide2_3972 Alide2_3972 4133753 4133980 + pseudogene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3972 Alide2_3973 Alide2_3973 Alide2_3973 4134223 4135314 + Sporulation domain-containing protein PFAM: Sporulation-related domain~KEGG: aav:Aave_3575 sporulation domain-containing protein gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3973 Alide2_3974 Alide2_3974 Alide2_3974 4135388 4135720 + hypothetical protein KEGG: ajs:Ajs_0920 hypothetical protein gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3974 Alide2_3975 Alide2_3975 Alide2_3975 4135730 4136962 - oxygen-independent coproporphyrinogen III oxidase TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase~PFAM: Radical SAM%3B HemN%2C C-terminal~KEGG: dia:Dtpsy_0856 oxygen-independent coproporphyrinogen III oxidase~SMART: Elongator protein 3/MiaB/NifB gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3975 Alide2_3976 Alide2_3976 Alide2_3976 4137054 4137671 - Nucleoside-triphosphatase rdgB PFAM: Ham1-like protein~TIGRFAM: Ham1-like protein~HAMAP: Nucleoside-triphosphatase~KEGG: dia:Dtpsy_0857 putative deoxyribonucleotide triphosphate pyrophosphatase gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3976 Alide2_3977 Alide2_3977 Alide2_3977 4137717 4138454 - Ribonuclease PH PFAM: Exoribonuclease%2C phosphorolytic domain 1%3B Exoribonuclease%2C phosphorolytic domain 2~TIGRFAM: Ribonuclease phosphorolytic%2C bacterial-type~HAMAP: Ribonuclease phosphorolytic%2C bacterial-type~KEGG: dia:Dtpsy_0858 ribonuclease PH gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3977 Alide2_3978 Alide2_3978 Alide2_3978 4138522 4139424 - protein serine/threonine phosphatase KEGG: dia:Dtpsy_0859 protein serine/threonine phosphatase~PFAM: Sporulation stage II%2C protein E C-terminal~SMART: Protein phosphatase 2C-like gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3978 Alide2_3979 Alide2_3979 Alide2_3979 4139421 4140494 - serine/threonine protein kinase KEGG: dia:Dtpsy_0860 serine/threonine protein kinase~PFAM: Serine/threonine-protein kinase-like domain~SMART: Serine/threonine-protein kinase domain%3B Tyrosine-protein kinase%2C catalytic domain gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3979 Alide2_3980 Alide2_3980 Alide2_3980 4140533 4141426 + Conserved hypothetical protein CHP00255 KEGG: ajs:Ajs_0926 hypothetical protein~TIGRFAM: Conserved hypothetical protein CHP00255~PFAM: Domain of unknown function DUF1732%3B YicC-like%2C N-terminal gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3980 Alide2_3981 Alide2_3981 Alide2_3981 4141458 4144895 - hypothetical protein KEGG: cag:Cagg_1487 hypothetical protein gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3981 Alide2_3982 Alide2_3982 Alide2_3982 4144916 4147213 - hypothetical protein KEGG: cag:Cagg_1488 hypothetical protein gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3982 Alide2_3983 Alide2_3983 Alide2_3983 4147210 4150125 - Conserved hypothetical protein CHP02243 TIGRFAM: Conserved hypothetical protein CHP02243~KEGG: bra:BRADO4376 hypothetical protein gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3983 Alide2_3984 Alide2_3984 Alide2_3984 4150122 4152605 - Conserved hypothetical protein CHP02243 TIGRFAM: Conserved hypothetical protein CHP02243~KEGG: chl:Chy400_2341 hypothetical protein gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3984 Alide2_3985 Alide2_3985 Alide2_3985 4152602 4152970 - GPW/gp25 family protein PFAM: GPW/gp25~KEGG: cag:Cagg_1491 gpW/GP25 family protein gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3985 Alide2_3986 Alide2_3986 Alide2_3986 4152974 4153294 - hypothetical protein KEGG: aba:Acid345_0852 hypothetical protein gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3986 Alide2_3987 Alide2_3987 Alide2_3987 4153305 4153814 - baseplate assembly protein V PFAM: Phage baseplate assembly protein V~KEGG: nde:NIDE2232 hypothetical protein gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3987 Alide2_3988 Alide2_3988 Alide2_3988 4153826 4154968 - hypothetical protein KEGG: nde:NIDE2231 hypothetical protein gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3988 Alide2_3989 Alide2_3989 Alide2_3989 4154971 4155333 - hypothetical protein KEGG: aba:Acid345_0855 hypothetical protein gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3989 Alide2_3990 Alide2_3990 Alide2_3990 4155336 4155992 - hypothetical protein KEGG: nde:NIDE2229 hypothetical protein gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3990 Alide2_3991 Alide2_3991 Alide2_3991 4156009 4157364 - hypothetical protein KEGG: scl:sce1839 hypothetical protein gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3991 Alide2_3992 Alide2_3992 Alide2_3992 4157540 4157806 - hypothetical protein gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3992 Alide2_3993 Alide2_3993 Alide2_3993 4157803 4160340 - hypothetical protein KEGG: scl:sce2110 hypothetical protein gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3993 Alide2_3994 Alide2_3994 Alide2_3994 4160337 4162277 - AAA ATPase central domain protein KEGG: nde:NIDE2224 putative ATPase~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3994 Alide2_3995 Alide2_3995 Alide2_3995 4162274 4163611 - hypothetical protein KEGG: nde:NIDE2223 hypothetical protein gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3995 Alide2_3996 Alide2_3996 Alide2_3996 4163608 4164348 - hypothetical protein KEGG: dre:100006405 hypothetical LOC100006405 gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3996 Alide2_3997 Alide2_3997 Alide2_3997 4164345 4165064 - hypothetical protein KEGG: scl:sce2087 hypothetical protein gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3997 Alide2_3998 Alide2_3998 Alide2_3998 4165081 4165605 - Conserved hypothetical protein CHP02241%2C phage tail region protein KEGG: cag:Cagg_1504 hypothetical protein~TIGRFAM: Conserved hypothetical protein CHP02241%2C phage tail region protein~PFAM: Bacteriophage T4%2C Gp19%2C tail tube gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3998 Alide2_3999 Alide2_3999 Alide2_3999 4165621 4167513 - phage tail sheath protein KEGG: nha:Nham_0832 phage tail sheath protein gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_3999 Alide2_4000 Alide2_4000 Alide2_4000 4167905 4168525 + guanylate kinase SMART: Guanylate kinase/L-type calcium channel~TIGRFAM: Guanylate kinase%2C sub-group~KEGG: dia:Dtpsy_0862 guanylate kinase~PFAM: Guanylate kinase gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4000 Alide2_4001 Alide2_4001 Alide2_4001 4168545 4168748 + DNA-directed RNA polymerase subunit omega TIGRFAM: DNA-directed RNA polymerase%2C omega subunit~HAMAP: DNA-directed RNA polymerase%2C omega subunit~KEGG: dia:Dtpsy_0863 DNA-directed RNA polymerase subunit omega~PFAM: RNA polymerase%2C subunit omega/K/RPABC2 gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4001 Alide2_4002 Alide2_4002 Alide2_4002 4168849 4171113 + (p)ppGpp synthetase I%2C SpoT/RelA KEGG: dia:Dtpsy_0864 (p)ppGpp synthetase I%2C SpoT/RelA~PFAM: RelA/SpoT%3B TGS%3B Amino acid-binding ACT%3B Metal-dependent phosphohydrolase%2C HD subdomain~manually curated~TIGRFAM: RelA/SpoT protein~SMART: RelA/SpoT%3B Metal-dependent phosphohydrolase%2C HD domain gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4002 Alide2_4003 Alide2_4003 Alide2_4003 4171120 4171686 - transcription elongation factor GreB TIGRFAM: Transcription elongation factor GreB~HAMAP: Transcription elongation factor greA~KEGG: ajs:Ajs_0950 transcription elongation factor GreB~PFAM: Transcription elongation factor%2C GreA/GreB%2C N-terminal%3B Transcription elongation factor%2C GreA/GreB%2C C-terminal gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4003 Alide2_4004 Alide2_4004 Alide2_4004 4172015 4172293 - hypothetical protein KEGG: dia:Dtpsy_0866 hypothetical protein gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4004 Alide2_4005 Alide2_4005 Alide2_4005 4172418 4172774 + ribosomal protein S15 KEGG: xtr:100487598 30S ribosomal protein S15-like~TIGRFAM: Ribosomal protein S15%2C bacterial-type~PFAM: Ribosomal protein S15 gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4005 Alide2_4006 Alide2_4006 Alide2_4006 4173005 4175200 + polyribonucleotide nucleotidyltransferase SMART: RNA-binding domain%2C S1%3B K Homology~TIGRFAM: Polyribonucleotide nucleotidyltransferase~KEGG: ctt:CtCNB1_1057 3' exoribonuclease~PFAM: Exoribonuclease%2C phosphorolytic domain 1%3B Ribosomal protein S1%2C RNA-binding domain%3B Exoribonuclease%2C phosphorolytic domain 2%3B K Homology%2C type 1%2C subgroup%3B Polynucleotide phosphorylase%2C phosphorolytic RNA-binding%2C bacterial/organelle-type gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4006 Alide2_4007 Alide2_4007 Alide2_4007 4175311 4176315 + NAD(P)H quinone oxidoreductase%2C PIG3 family TIGRFAM: Quinone oxidoreductase putative%2C PIG3~KEGG: dia:Dtpsy_0869 NAD(P)H quinone oxidoreductase%2C PIG3 family~PFAM: Alcohol dehydrogenase%2C C-terminal%3B Alcohol dehydrogenase GroES-like gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4007 Alide2_4008 Alide2_4008 Alide2_4008 4176303 4177106 + triosephosphate isomerase TIGRFAM: Triosephosphate isomerase~KEGG: dia:Dtpsy_0870 triosephosphate isomerase~PFAM: Triosephosphate isomerase gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4008 Alide2_4009 Alide2_4009 Alide2_4009 4177103 4177468 + preprotein translocase%2C SecG subunit KEGG: dia:Dtpsy_0871 preprotein translocase%2C SecG subunit~TIGRFAM: Preprotein translocase SecG subunit~PFAM: Preprotein translocase SecG subunit gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4009 Alide2_4010 Alide2_4010 Alide2_4010 4177727 4178116 + NAD(P)H-quinone oxidoreductase subunit 3 KEGG: ajs:Ajs_0957 NADH-ubiquinone/plastoquinone oxidoreductase%2C chain 3~HAMAP: NAD(P)H-quinone oxidoreductase subunit 3%2C bacterial/plastid~PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%2C chain 3 gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4010 Alide2_4011 Alide2_4011 Alide2_4011 4178153 4178632 + NADH-quinone oxidoreductase%2C B subunit TIGRFAM: NADH-ubiquinone oxidoreductase%2C 20 Kd subunit~KEGG: dia:Dtpsy_0873 NADH dehydrogenase subunit B~PFAM: NADH:ubiquinone oxidoreductase-like%2C 20kDa subunit gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4011 Alide2_4012 Alide2_4012 Alide2_4012 4178642 4179250 + NADH (or F420H2) dehydrogenase%2C subunit C KEGG: aav:Aave_1265 NADH (or F420H2) dehydrogenase%2C subunit C~TIGRFAM: NADH dehydrogenase%2C subunit C~PFAM: NADH:ubiquinone oxidoreductase%2C 30kDa subunit gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4012 Alide2_4013 Alide2_4013 Alide2_4013 4179278 4180531 + NADH dehydrogenase I%2C D subunit TIGRFAM: NADH dehydrogenase I%2C subunit D~KEGG: dia:Dtpsy_0875 NADH dehydrogenase subunit D~PFAM: NADH-quinone oxidoreductase%2C subunit D gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4013 Alide2_4014 Alide2_4014 Alide2_4014 4180528 4181019 + NADH-quinone oxidoreductase%2C E subunit TIGRFAM: NADH:ubiquinone oxidoreductase%2C 24kDa subunit~KEGG: dia:Dtpsy_0876 NADH-quinone oxidoreductase%2C E subunit~PFAM: NADH:ubiquinone oxidoreductase%2C 24kDa subunit gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4014 Alide2_4015 Alide2_4015 Alide2_4015 4181016 4182365 + NADH-quinone oxidoreductase%2C F subunit SMART: NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding~TIGRFAM: NADH ubiquinone oxidoreductase%2C F subunit~KEGG: dia:Dtpsy_0877 NADH-quinone oxidoreductase%2C F subunit~PFAM: NADH:ubiquinone oxidoreductase%2C 51kDa subunit%3B Soluble ligand binding domain%3B NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4015 Alide2_4016 Alide2_4016 Alide2_4016 4182381 4184501 + NADH-quinone oxidoreductase%2C chain G SMART: NADH:ubiquinone oxidoreductase%2C subunit G%2C iron-sulphur binding~TIGRFAM: NADH:ubiquinone oxidoreductase%2C subunit G~KEGG: aav:Aave_1269 NADH dehydrogenase subunit G~PFAM: Molybdopterin oxidoreductase%3B Ferredoxin%3B NADH:ubiquinone oxidoreductase%2C subunit G%2C iron-sulphur binding gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4016 Alide2_4017 Alide2_4017 Alide2_4017 4184498 4185574 + NADH dehydrogenase (quinone) KEGG: dia:Dtpsy_0879 NADH dehydrogenase (quinone)~PFAM: NADH:ubiquinone oxidoreductase%2C subunit 1/F420H2 oxidoreductase subunit H gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4017 Alide2_4018 Alide2_4018 Alide2_4018 4185591 4186103 + NAD(P)H-quinone oxidoreductase subunit I PFAM: 4Fe-4S binding domain~TIGRFAM: NADH-quinone oxidoreductase%2C chain I~HAMAP: NADH-quinone oxidoreductase%2C chain I~KEGG: dia:Dtpsy_0880 NADH dehydrogenase subunit I gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4018 Alide2_4019 Alide2_4019 Alide2_4019 4186145 4186813 + NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%2C chain 6~KEGG: dia:Dtpsy_0881 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4019 Alide2_4020 Alide2_4020 Alide2_4020 4186810 4187118 + NADH-ubiquinone oxidoreductase chain 4L PFAM: NADH-ubiquinone oxidoreductase chain 4L/K~KEGG: dia:Dtpsy_0882 NADH-ubiquinone oxidoreductase chain 4L gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4020 Alide2_4021 Alide2_4021 Alide2_4021 4187175 4189184 + proton-translocating NADH-quinone oxidoreductase%2C chain L TIGRFAM: NADH-plastoquinone oxidoreductase%2C chain 5~KEGG: dia:Dtpsy_0883 proton-translocating NADH-quinone oxidoreductase%2C chain L~PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%3B NADH:ubiquinone oxidoreductase%2C chain 5/L%2C N-terminal gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4021 Alide2_4022 Alide2_4022 Alide2_4022 4189198 4190673 + proton-translocating NADH-quinone oxidoreductase%2C chain M TIGRFAM: NADH-quinone oxidoreductase%2C chain M/4~KEGG: dia:Dtpsy_0884 proton-translocating NADH-quinone oxidoreductase%2C chain M~PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%3B NADH:ubiquinone oxidoreductase%2C chain 4%2C N-terminal gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4022 Alide2_4023 Alide2_4023 Alide2_4023 4190695 4192191 + proton-translocating NADH-quinone oxidoreductase%2C chain N TIGRFAM: NAD(P)H-quinone oxidoreductase%2C subunit N/subunit 2~KEGG: dia:Dtpsy_0885 NADH dehydrogenase subunit N~PFAM: NADH:ubiquinone/plastoquinone oxidoreductase gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4023 Alide2_4024 Alide2_4024 Alide2_4024 4192211 4192528 + Uncharacterized conserved protein UCP019883%2C membrane PFAM: Uncharacterised conserved protein UCP019883%2C membrane~KEGG: dia:Dtpsy_0886 putative transmembrane protein gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4024 Alide2_4025 Alide2_4025 Alide2_4025 4192539 4193003 + protein of unknown function DUF1178 KEGG: dia:Dtpsy_0887 protein of unknown function DUF1178~manually curated~PFAM: Protein of unknown function DUF1178 gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4025 Alide2_4026 Alide2_4026 Alide2_4026 4193010 4193378 - hypothetical protein KEGG: ajs:Ajs_0974 hypothetical protein gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4026 Alide2_4027 Alide2_4027 Alide2_4027 4193422 4194840 - Glutamate dehydrogenase (NADP(+)) PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal%3B Glutamate/phenylalanine/leucine/valine dehydrogenase%2C dimerisation domain~KEGG: ajs:Ajs_0977 glutamate dehydrogenase~SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4027 Alide2_4028 Alide2_4028 Alide2_4028 4195073 4197037 - DNA mismatch repair protein mutL SMART: MutL%2C C-terminal%2C dimerisation~TIGRFAM: DNA mismatch repair protein%2C N-terminal~KEGG: ajs:Ajs_0978 DNA mismatch repair protein MutL~HAMAP: DNA mismatch repair protein%2C MutL~PFAM: MutL%2C C-terminal%2C dimerisation%3B DNA mismatch repair protein%2C C-terminal%3B ATPase-like%2C ATP-binding domain gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4028 Alide2_4029 Alide2_4029 Alide2_4029 4197045 4197299 - 17 kDa surface antigen KEGG: dia:Dtpsy_0894 17 kDa surface antigen gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4029 Alide2_4030 Alide2_4030 Alide2_4030 4197513 4198160 + SNARE associated Golgi protein-like protein PFAM: SNARE associated Golgi protein~KEGG: dia:Dtpsy_1467 SNARE associated Golgi protein gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4030 Alide2_4031 Alide2_4031 Alide2_4031 4198164 4199444 - guanine deaminase TIGRFAM: Guanine deaminase~KEGG: vap:Vapar_3881 guanine deaminase~PFAM: Amidohydrolase 1 gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4031 Alide2_4032 Alide2_4032 Alide2_4032 4199449 4200804 - Xanthine/uracil/vitamin C permease PFAM: Xanthine/uracil/vitamin C permease~KEGG: dac:Daci_5908 xanthine/uracil/vitamin C permease gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4032 Alide2_4033 Alide2_4033 Alide2_4033 4200801 4201856 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: vap:Vapar_3905 transcriptional regulator%2C LysR family gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4033 Alide2_4034 Alide2_4034 Alide2_4034 4201853 4204282 - xanthine dehydrogenase%2C molybdopterin binding subunit TIGRFAM: Xanthine dehydrogenase%2C molybdopterin binding subunit~KEGG: vap:Vapar_3906 xanthine dehydrogenase%2C molybdopterin binding subunit~PFAM: Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding%3B Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4034 Alide2_4035 Alide2_4035 Alide2_4035 4204292 4205851 - xanthine dehydrogenase%2C small subunit TIGRFAM: Xanthine dehydrogenase%2C small subunit~KEGG: dac:Daci_5910 xanthine dehydrogenase small subunit~PFAM: Molybdopterin dehydrogenase%2C FAD-binding%3B [2Fe-2S]-binding%3B CO dehydrogenase flavoprotein%2C C-terminal gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4035 Alide2_4036 Alide2_4036 Alide2_4036 4206061 4206396 - Cupin 2 conserved barrel domain protein PFAM: Cupin 2%2C conserved barrel~KEGG: har:HEAR2969 hypothetical protein gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4036 Alide2_4037 Alide2_4037 Alide2_4037 4206421 4207827 - cell wall hydrolase/autolysin KEGG: ajs:Ajs_0983 N-acetylmuramoyl-L-alanine amidase~PFAM: Cell wall hydrolase/autolysin%2C catalytic~SMART: Cell wall hydrolase/autolysin%2C catalytic gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4037 Alide2_4038 Alide2_4038 Alide2_4038 4207824 4208333 - Uncharacterized protein family UPF0079%2C ATPase manually curated~TIGRFAM: Uncharacterised protein family UPF0079%2C ATPase bacteria~KEGG: dia:Dtpsy_0899 protein of unknown function UPF0079~PFAM: Uncharacterised protein family UPF0079%2C ATPase bacteria gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4038 Alide2_4039 Alide2_4039 Alide2_4039 4208427 4209398 + iron-sulfur cluster binding protein manually curated~TIGRFAM: 4Fe-4S cluster binding~KEGG: xtr:100492313 putative electron transport protein yjeS-like~PFAM: Domain of unknown function DUF1730%3B 4Fe-4S binding domain gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4039 Alide2_4040 Alide2_4040 Alide2_4040 4209457 4210374 - Auxin Efflux Carrier PFAM: Auxin efflux carrier~KEGG: dia:Dtpsy_0901 auxin efflux carrier gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4040 Alide2_4041 Alide2_4041 Alide2_4041 4210567 4211532 + hypothetical protein KEGG: dia:Dtpsy_0902 hypothetical protein gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4041 Alide2_4042 Alide2_4042 Alide2_4042 4211580 4212479 + Tyrosine recombinase xerC TIGRFAM: Tyrosine recombinase XerD~HAMAP: Tyrosine recombinase xerC%3B Tyrosine recombinase XerD~KEGG: dia:Dtpsy_0903 tyrosine recombinase XerD~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4042 Alide2_4043 Alide2_4043 Alide2_4043 4212776 4213597 + Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: acp:A2cp1_1683 methyltransferase type 11 gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4043 Alide2_4044 Alide2_4044 Alide2_4044 4213609 4215456 - thiamine biosynthesis protein ThiC KEGG: dia:Dtpsy_2971 thiamine biosynthesis protein ThiC~TIGRFAM: Thiamine biosynthesis protein ThiC~PFAM: Thiamine biosynthesis protein ThiC gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4044 Alide2_4045 Alide2_4045 Alide2_4045 4215693 4215869 - hypothetical protein KEGG: dia:Dtpsy_2972 hypothetical protein gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4045 Alide2_4046 Alide2_4046 Alide2_4046 4215879 4216802 - UDP-3-0-acyl N-acetylglucosamine deacetylase KEGG: dia:Dtpsy_2973 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase~TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase~PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4046 Alide2_4047 Alide2_4047 Alide2_4047 4216842 4217606 - transcriptional regulator%2C IclR family KEGG: bav:BAV0211 IclR-family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4047 Alide2_4048 Alide2_4048 Alide2_4048 4217696 4218778 + cyclase family protein PFAM: Putative cyclase~KEGG: aav:Aave_3942 hypothetical protein gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4048 Alide2_4049 Alide2_4049 Alide2_4049 4218790 4220508 + o-succinylbenzoate--CoA ligase KEGG: bpt:Bpet0794 acyl-CoA synthetase~PFAM: AMP-dependent synthetase/ligase gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4049 Alide2_4050 Alide2_4050 Alide2_4050 4220505 4221248 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: bbr:BB4035 putative oxidoreductase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4050 Alide2_4051 Alide2_4051 Alide2_4051 4221322 4222527 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: reu:Reut_B3887 UreA/short-chain amide ABC transporter gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4051 Alide2_4052 Alide2_4052 Alide2_4052 4222544 4223506 + exported protein KEGG: bav:BAV0225 exported protein gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4052 Alide2_4053 Alide2_4053 Alide2_4053 4223510 4224709 + Butyryl-CoA dehydrogenase KEGG: bav:BAV0226 acyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4053 Alide2_4054 Alide2_4054 Alide2_4054 4224790 4226010 - cell division protein FtsZ TIGRFAM: Cell division protein FtsZ%2C N-terminal~PFAM: Tubulin/FtsZ%2C GTPase domain~KEGG: dia:Dtpsy_2975 cell division protein FtsZ~SMART: Tubulin/FtsZ%2C GTPase domain%3B Tubulin/FtsZ%2C 2-layer sandwich domain gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4054 Alide2_4055 Alide2_4055 Alide2_4055 4226182 4227411 - cell division protein FtsA TIGRFAM: Cell division protein family FtsA~PFAM: Cell division protein FtsA domain~KEGG: dia:Dtpsy_2976 cell division protein FtsA~SMART: Cell division protein FtsA domain gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4055 Alide2_4056 Alide2_4056 Alide2_4056 4227417 4228289 - Polypeptide-transport-associated domain protein FtsQ-type PFAM: Polypeptide-transport-associated%2C FtsQ-type%3B Cell division protein FtsQ~KEGG: dia:Dtpsy_2977 cell division protein FtsQ gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4056 Alide2_4057 Alide2_4057 Alide2_4057 4228294 4229262 - D-alanine/D-alanine ligase TIGRFAM: D-alanine--D-alanine ligase~KEGG: ajs:Ajs_3668 D-alanine--D-alanine ligase~PFAM: D-alanine--D-alanine ligase%2C C-terminal%3B D-alanine--D-alanine ligase%2C N-terminal gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4057 Alide2_4058 Alide2_4058 Alide2_4058 4229259 4230692 - UDP-N-acetylmuramate/alanine ligase TIGRFAM: UDP-N-acetylmuramate-alanine ligase~KEGG: dia:Dtpsy_2979 UDP-N-acetylmuramate--L-alanine ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4058 Alide2_4059 Alide2_4059 Alide2_4059 4230689 4231753 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TIGRFAM: N-acetylglucosaminyltransferase%2C MurG~HAMAP: N-acetylglucosaminyltransferase%2C MurG~KEGG: aav:Aave_0821 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase~PFAM: Glycosyl transferase%2C family 28%2C C-terminal%3B Glycosyl transferase%2C family 28 gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4059 Alide2_4060 Alide2_4060 Alide2_4060 4231750 4233021 - cell division protein FtsW KEGG: ajs:Ajs_3671 cell division protein FtsW~TIGRFAM: Cell division protein FtsW~PFAM: Cell cycle protein gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4060 Alide2_4061 Alide2_4061 Alide2_4061 4233018 4234799 - UDP-N-acetylmuramoylalanine/D-glutamate ligase KEGG: dia:Dtpsy_2982 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase~TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C C-terminal gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4061 Alide2_4062 Alide2_4062 Alide2_4062 4234796 4235974 - phospho-N-acetylmuramoyl-pentapeptide-transferase KEGG: dia:Dtpsy_2983 phospho-N-acetylmuramoyl-pentapeptide-transferase~TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase~PFAM: Glycosyl transferase%2C family 4%3B Phospho-N-acetylmuramoyl-pentapeptide transferase%2C conserved site gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4062 Alide2_4063 Alide2_4063 Alide2_4063 4235965 4237356 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate/D-alanyl-D-alanyl ligase TIGRFAM: UDP-MurNAc-pentapeptide synthetase~KEGG: ajs:Ajs_3674 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4063 Alide2_4064 Alide2_4064 Alide2_4064 4237353 4238858 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal~TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase~HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase~KEGG: dia:Dtpsy_2985 UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4064 Alide2_4065 Alide2_4065 Alide2_4065 4238855 4240603 - Peptidoglycan glycosyltransferase KEGG: dia:Dtpsy_2986 peptidoglycan glycosyltransferase~PFAM: Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding protein%2C dimerisation domain gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4065 Alide2_4066 Alide2_4066 Alide2_4066 4240600 4240914 - cell division protein FtsL KEGG: aav:Aave_0814 cell division protein FtsL~TIGRFAM: Cell division protein%2C FtsL -like~PFAM: Cell division protein FtsL gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4066 Alide2_4067 Alide2_4067 Alide2_4067 4240911 4241837 - Ribosomal RNA small subunit methyltransferase H TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~HAMAP: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~KEGG: dia:Dtpsy_2988 S-adenosyl-methyltransferase MraW~PFAM: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4067 Alide2_4068 Alide2_4068 Alide2_4068 4241847 4242275 - Protein mraZ TIGRFAM: MraZ~HAMAP: MraZ~KEGG: dia:Dtpsy_2989 cell division protein MraZ~PFAM: MraZ domain gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4068 Alide2_4069 Alide2_4069 Alide2_4069 4242521 4243825 - heat shock protein HslVU%2C ATPase subunit HslU TIGRFAM: Heat shock protein HslU~PFAM: ATPase%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp ATPase%2C C-terminal~KEGG: dia:Dtpsy_2990 ATP-dependent protease ATP-binding subunit HslU~SMART: ATPase%2C AAA+ type%2C core gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4069 Alide2_4070 Alide2_4070 Alide2_4070 4243912 4244457 - ATP-dependent protease HslVU%2C peptidase subunit KEGG: dia:Dtpsy_2991 ATP-dependent protease peptidase subunit~TIGRFAM: ATP-dependent protease%2C HslV subunit~PFAM: Proteasome%2C subunit alpha/beta gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4070 Alide2_4071 Alide2_4071 Alide2_4071 4244518 4246254 - hypothetical protein KEGG: dia:Dtpsy_2992 hypothetical protein gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4071 Alide2_4072 Alide2_4072 Alide2_4072 4246286 4246777 - transcriptional regulator%2C TraR/DksA family TIGRFAM: RNA polymerase-binding%2C DksA~KEGG: dia:Dtpsy_2993 transcriptional regulator%2C TraR/DksA family gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4072 Alide2_4073 Alide2_4073 Alide2_4073 4247128 4248198 - cobalamin synthesis protein P47K KEGG: dia:Dtpsy_2994 cobalamin synthesis protein P47K~PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like%3B Cobalamin (vitamin B12) biosynthesis CobW-like%2C C-terminal~SMART: Cobalamin (vitamin B12) biosynthesis CobW-like%2C C-terminal gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4073 Alide2_4074 Alide2_4074 Alide2_4074 4248291 4248521 - hypothetical protein KEGG: gpb:HDN1F_32180 hypothetical protein gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4074 Alide2_4075 Alide2_4075 Alide2_4075 4248698 4249423 - response regulator receiver protein KEGG: dac:Daci_1875 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4075 Alide2_4076 Alide2_4076 Alide2_4076 4249416 4250090 - DNA binding domain protein%2C excisionase family TIGRFAM: Excisionase/Xis%2C DNA-binding~PFAM: Signal transduction response regulator%2C receiver domain~KEGG: dac:Daci_1874 response regulator receiver protein~SMART: Signal transduction response regulator%2C receiver domain gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4076 Alide2_4077 Alide2_4077 Alide2_4077 4250171 4250557 + response regulator receiver protein KEGG: ctt:CtCNB1_1998 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4077 Alide2_4078 Alide2_4078 Alide2_4078 4250589 4253078 + PAS/PAC sensor signal transduction histidine kinase TIGRFAM: PAS~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS fold-4~KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4078 Alide2_4079 Alide2_4079 Alide2_4079 4253121 4253789 - DNA binding domain protein%2C excisionase family TIGRFAM: Excisionase/Xis%2C DNA-binding~PFAM: Signal transduction response regulator%2C receiver domain~KEGG: aav:Aave_2239 response regulator receiver protein~SMART: Signal transduction response regulator%2C receiver domain gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4079 Alide2_4080 Alide2_4080 Alide2_4080 4253854 4254240 + response regulator receiver protein KEGG: lch:Lcho_0734 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4080 Alide2_4081 Alide2_4081 Alide2_4081 4254237 4255046 + metal dependent phosphohydrolase KEGG: dac:Daci_0737 metal dependent phosphohydrolase~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain~SMART: Metal-dependent phosphohydrolase%2C HD domain gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4081 Alide2_4082 Alide2_4082 Alide2_4082 4255184 4257262 + PAS/PAC sensor signal transduction histidine kinase TIGRFAM: PAS~PFAM: ATPase-like%2C ATP-binding domain%3B PAS fold-4%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4082 Alide2_4083 Alide2_4083 Alide2_4083 4257244 4259001 + integral membrane sensor signal transduction histidine kinase KEGG: lch:Lcho_4371 histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4083 Alide2_4084 Alide2_4084 Alide2_4084 4259195 4260889 + methyl-accepting chemotaxis sensory transducer KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4084 Alide2_4085 Alide2_4085 Alide2_4085 4260906 4261868 - tyrosine recombinase XerC KEGG: dia:Dtpsy_2996 tyrosine recombinase XerC~TIGRFAM: Tyrosine recombinase XerC~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4085 Alide2_4086 Alide2_4086 Alide2_4086 4261962 4262657 - protein of unknown function DUF484 PFAM: Protein of unknown function DUF484~KEGG: dia:Dtpsy_2997 protein of unknown function DUF484 gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4086 Alide2_4087 Alide2_4087 Alide2_4087 4262654 4263532 - Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase~HAMAP: Diaminopimelate epimerase~KEGG: dia:Dtpsy_2998 diaminopimelate epimerase~PFAM: Diaminopimelate epimerase gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4087 Alide2_4088 Alide2_4088 Alide2_4088 4263608 4265302 + beta-lactamase domain protein manually curated~PFAM: Beta-lactamase-like%3B NUDIX hydrolase domain~KEGG: dia:Dtpsy_3001 beta-lactamase domain protein~SMART: Beta-lactamase-like gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4088 Alide2_4089 Alide2_4089 Alide2_4089 4265295 4266020 + RNA-binding S4 domain protein KEGG: dia:Dtpsy_3002 RNA-binding S4 domain protein~PFAM: RNA-binding S4~SMART: RNA-binding S4 gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4089 Alide2_4090 Alide2_4090 Alide2_4090 4266512 4266739 - hypothetical protein KEGG: ajs:Ajs_3722 hypothetical protein gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4090 Alide2_4091 Alide2_4091 Alide2_4091 4266849 4267769 + cysteine synthase TIGRFAM: Cysteine synthase K/M%3B Cysteine synthase A~KEGG: dac:Daci_1442 cysteine synthase~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4091 Alide2_4092 Alide2_4092 Alide2_4092 4267800 4268900 + heat shock protein DnaJ domain protein PFAM: Heat shock protein DnaJ%2C N-terminal~KEGG: bvi:Bcep1808_3882 heat shock protein DnaJ domain-containing protein gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4092 Alide2_4093 Alide2_4093 Alide2_4093 4269032 4270789 + FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: dia:Dtpsy_3010 FAD dependent oxidoreductase gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4093 Alide2_4094 Alide2_4094 Alide2_4094 4270854 4271303 + Carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase~KEGG: dac:Daci_0909 carboxymuconolactone decarboxylase gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4094 Alide2_4095 Alide2_4095 Alide2_4095 4271342 4272244 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_3510 LysR family transcriptional regulator gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4095 Alide2_4096 Alide2_4096 Alide2_4096 4272314 4273183 + Citryl-CoA lyase KEGG: xtr:100489146 citrate lyase subunit beta-like~PFAM: Aldehyde-lyase domain gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4096 Alide2_4097 Alide2_4097 Alide2_4097 4273211 4274188 + hypothetical protein KEGG: dac:Daci_3512 hypothetical protein gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4097 Alide2_4098 Alide2_4098 Alide2_4098 4274252 4275421 + Formyl-CoA transferase KEGG: dac:Daci_3513 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4098 Alide2_4099 Alide2_4099 Alide2_4099 4275418 4276260 + amidohydrolase 2 KEGG: dac:Daci_3514 amidohydrolase 2~manually curated~PFAM: Amidohydrolase 2 gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4099 Alide2_4100 Alide2_4100 Alide2_4100 4276277 4277233 + hypothetical protein KEGG: dac:Daci_3515 hypothetical protein gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4100 Alide2_4101 Alide2_4101 Alide2_4101 4277288 4277794 - transcriptional regulator%2C MarR family KEGG: cti:RALTA_B1490 transcriptional activator of cyclohexanecarboxylate anaerobic degradation%3B MarR type~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4101 Alide2_4102 Alide2_4102 Alide2_4102 4277925 4278692 + 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase~KEGG: lch:Lcho_1185 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4102 Alide2_4103 Alide2_4103 Alide2_4103 4278735 4279517 + 2-ketocyclohexanecarboxyl-CoA hydrolase TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase~KEGG: vei:Veis_4105 enoyl-CoA hydratase/isomerase~PFAM: Crotonase%2C core gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4103 Alide2_4104 Alide2_4104 Alide2_4104 4279537 4280694 + cyclohexanecarboxyl-CoA dehydrogenase TIGRFAM: Cyclohexanecarboxyl-CoA dehydrogenase~KEGG: lch:Lcho_1187 cyclohexanecarboxyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4104 Alide2_4105 Alide2_4105 Alide2_4105 4280730 4282385 + cyclohexanecarboxylate-CoA ligase TIGRFAM: Cyclohexanecarboxylate-CoA ligase~KEGG: pna:Pnap_2126 cyclohexanecarboxylate-CoA ligase~PFAM: AMP-dependent synthetase/ligase gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4105 Alide2_4106 Alide2_4106 Alide2_4106 4282486 4283418 - Electron transfer flavoprotein alpha subunit KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit~PFAM: Electron transfer flavoprotein%2C alpha subunit%2C C-terminal%3B Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4106 Alide2_4107 Alide2_4107 Alide2_4107 4283436 4284185 - Electron transfer flavoprotein alpha/beta-subunit KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit~PFAM: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~SMART: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4107 Alide2_4108 Alide2_4108 Alide2_4108 4284210 4285184 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase%2C NPD~KEGG: ajs:Ajs_3732 2-nitropropane dioxygenase%2C NPD gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4108 Alide2_4109 Alide2_4109 Alide2_4109 4285192 4286187 - hypothetical protein KEGG: dac:Daci_1400 hypothetical protein gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4109 Alide2_4110 Alide2_4110 Alide2_4110 4286260 4287492 - Formyl-CoA transferase KEGG: ajs:Ajs_3734 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4110 Alide2_4111 Alide2_4111 Alide2_4111 4287517 4287939 - phenylacetic acid degradation-related protein KEGG: mrb:Mrub_0164 thioesterase superfamily protein~TIGRFAM: Phenylacetic acid degradation-related protein~PFAM: Thioesterase superfamily gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4111 Alide2_4112 Alide2_4112 Alide2_4112 4287976 4288782 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: xtr:100494378 probable enoyl-CoA hydratase paaG-like gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4112 Alide2_4113 Alide2_4113 Alide2_4113 4288898 4290028 - acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain~KEGG: dac:Daci_1396 acyl-CoA dehydrogenase domain-containing protein gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4113 Alide2_4114 Alide2_4114 Alide2_4114 4290039 4291235 - Isovaleryl-CoA dehydrogenase KEGG: ajs:Ajs_3737 acyl-CoA dehydrogenase domain-containing protein~PFAM: Acyl-CoA dehydrogenase%2C N-terminal%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA oxidase/dehydrogenase%2C type 1 gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4114 Alide2_4115 Alide2_4115 Alide2_4115 4291248 4292447 - acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: dia:Dtpsy_3019 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C C-terminal%3B Thiolase%2C N-terminal gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4115 Alide2_4116 Alide2_4116 Alide2_4116 4292593 4294710 - 3-hydroxybutyryl-CoA epimerase KEGG: dac:Daci_1393 3-hydroxyacyl-CoA dehydrogenase NAD-binding~PFAM: 3-hydroxyacyl-CoA dehydrogenase%2C NAD binding%3B Crotonase%2C core%3B 3-hydroxyacyl-CoA dehydrogenase%2C C-terminal gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4116 Alide2_4117 Alide2_4117 Alide2_4117 4294821 4295729 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dac:Daci_1392 LysR family transcriptional regulator gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4117 Alide2_4118 Alide2_4118 Alide2_4118 4295767 4296081 + transposase KEGG: bpe:BP0072 transposase gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4118 Alide2_4119 Alide2_4119 Alide2_4119 4296168 4297082 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4119 Alide2_4120 Alide2_4120 Alide2_4120 4297079 4297402 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4120 Alide2_4121 Alide2_4121 Alide2_4121 4297455 4297742 + pseudogene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4121 Alide2_4122 Alide2_4122 Alide2_4122 4297866 4298219 - hypothetical protein KEGG: dia:Dtpsy_3022 hypothetical protein gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4122 Alide2_4123 Alide2_4123 Alide2_4123 4298305 4299177 - peptidase M48 Ste24p PFAM: Peptidase M48~KEGG: ajs:Ajs_3742 heat shock protein HtpX gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4123 Alide2_4124 Alide2_4124 Alide2_4124 4299304 4300095 - putative transmembrane protein KEGG: ajs:Ajs_3743 putative transmembrane protein gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4124 Alide2_4125 Alide2_4125 Alide2_4125 4300077 4301126 - Dihydroorotase PFAM: Amidohydrolase 1~TIGRFAM: Dihydroorotase homodimeric type~HAMAP: Dihydroorotase homodimeric type~KEGG: dia:Dtpsy_3026 dihydroorotase gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4125 Alide2_4126 Alide2_4126 Alide2_4126 4301248 4301749 - pseudogene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4126 Alide2_4127 Alide2_4127 Alide2_4127 4301889 4302272 + protein of unknown function DUF488 PFAM: Protein of unknown function DUF488~KEGG: rfr:Rfer_4130 hypothetical protein gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4127 Alide2_4128 Alide2_4128 Alide2_4128 4302282 4302740 + alkylhydroperoxidase like protein%2C AhpD family KEGG: ote:Oter_3729 alkylhydroperoxidase~TIGRFAM: Alkylhydroperoxidase AhpD core~PFAM: Carboxymuconolactone decarboxylase gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4128 Alide2_4129 Alide2_4129 Alide2_4129 4302761 4308595 - excinuclease ABC%2C A subunit TIGRFAM: Excinuclease ABC%2C A subunit~PFAM: ABC transporter-like~KEGG: ajs:Ajs_3747 UvrA family protein~SMART: ATPase%2C AAA+ type%2C core gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4129 Alide2_4130 Alide2_4130 Alide2_4130 4308729 4309841 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dia:Dtpsy_3029 extracellular ligand-binding receptor gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4130 Alide2_4131 Alide2_4131 Alide2_4131 4309910 4310077 - hypothetical protein KEGG: ajs:Ajs_3750 hypothetical protein gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4131 Alide2_4132 Alide2_4132 Alide2_4132 4310223 4311242 - porin KEGG: ajs:Ajs_3751 porin gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4132 Alide2_4133 Alide2_4133 Alide2_4133 4311445 4313139 - General substrate transporter PFAM: General substrate transporter~KEGG: ajs:Ajs_3752 major facilitator superfamily transporter gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4133 Alide2_4134 Alide2_4134 Alide2_4134 4313456 4313764 + protein of unknown function DUF485 PFAM: Protein of unknown function DUF485~KEGG: dac:Daci_5956 hypothetical protein gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4134 Alide2_4135 Alide2_4135 Alide2_4135 4313761 4315497 + SSS sodium solute transporter superfamily KEGG: rpf:Rpic12D_0449 SSS sodium solute transporter superfamily~TIGRFAM: Sodium/solute symporter%2C subgroup~PFAM: Sodium/solute symporter gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4135 Alide2_4136 Alide2_4136 Alide2_4136 4315621 4316286 - Exonuclease RNase T and DNA polymerase III KEGG: pna:Pnap_0481 DNA polymerase III subunit epsilon~PFAM: Exonuclease%2C RNase T/DNA polymerase III~SMART: Exonuclease gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4136 Alide2_4137 Alide2_4137 Alide2_4137 4316283 4318097 - cyclic nucleotide-binding protein KEGG: dac:Daci_5960 CBS domain-containing protein~PFAM: Domain of unknown function DUF294%2C nucleotidyltransferase putative%3B Cystathionine beta-synthase%2C core%3B Domain of unknown function DUF294%2C putative nucleotidyltransferase substrate-binding~SMART: Cystathionine beta-synthase%2C core%3B Cyclic nucleotide-binding domain gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4137 Alide2_4138 Alide2_4138 Alide2_4138 4318120 4318761 - DSBA oxidoreductase PFAM: DSBA-like thioredoxin domain~KEGG: dac:Daci_5961 DsbA oxidoreductase gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4138 Alide2_4139 Alide2_4139 Alide2_4139 4318758 4319018 - protein of unknown function DUF1289 KEGG: dia:Dtpsy_3035 protein of unknown function DUF1289~manually curated~PFAM: Protein of unknown function DUF1289 gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4139 Alide2_4140 Alide2_4140 Alide2_4140 4319015 4319509 - YbaK/prolyl-tRNA synthetase associated region PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain~KEGG: aav:Aave_4348 YbaK/prolyl-tRNA synthetase associated region gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4140 Alide2_4141 Alide2_4141 Alide2_4141 4319515 4320429 - Hydroxymethylglutaryl-CoA lyase KEGG: ajs:Ajs_3757 hydroxymethylglutaryl-CoA lyase~PFAM: Pyruvate carboxyltransferase gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4141 Alide2_4142 Alide2_4142 Alide2_4142 4320715 4321635 - Hydroxypyruvate reductase KEGG: dia:Dtpsy_3039 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding~PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4142 Alide2_4143 Alide2_4143 Alide2_4143 4321673 4323694 - Methylcrotonoyl-CoA carboxylase PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal%3B Biotin carboxylase%2C C-terminal%3B Biotin/lipoyl attachment~KEGG: ajs:Ajs_3759 3-methylcrotonoyl-CoA carboxylase%2C alpha subunit~SMART: Biotin carboxylase%2C C-terminal gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4143 Alide2_4144 Alide2_4144 Alide2_4144 4323695 4324414 - putative transmembrane protein KEGG: dia:Dtpsy_3041 putative transmembrane protein gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4144 Alide2_4145 Alide2_4145 Alide2_4145 4324436 4325215 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: ajs:Ajs_3761 enoyl-CoA hydratase gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4145 Alide2_4146 Alide2_4146 Alide2_4146 4325226 4326830 - Methylcrotonoyl-CoA carboxylase KEGG: dia:Dtpsy_3044 propionyl-CoA carboxylase~PFAM: Carboxyl transferase gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4146 Alide2_4147 Alide2_4147 Alide2_4147 4326827 4328548 - Long-chain-fatty-acid--CoA ligase KEGG: ajs:Ajs_3764 AMP-binding domain protein~PFAM: AMP-dependent synthetase/ligase gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4147 Alide2_4148 Alide2_4148 Alide2_4148 4328694 4329752 + transcriptional regulator%2C AraC family KEGG: dia:Dtpsy_3046 transcriptional regulator%2C AraC family~PFAM: HTH transcriptional regulator%2C AraC~SMART: Helix-turn-helix%2C AraC type%2C DNA binding domain gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4148 Alide2_4149 Alide2_4149 Alide2_4149 4329812 4330477 + Glutathione S-transferase domain protein PFAM: Glutathione S-transferase%2C N-terminal~KEGG: ajs:Ajs_3767 glutathione S-transferase domain-containing protein gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4149 Alide2_4150 Alide2_4150 Alide2_4150 4330565 4332178 + Choline dehydrogenase KEGG: xtr:100491709 choline dehydrogenase-like~PFAM: Glucose-methanol-choline oxidoreductase%2C N-terminal%3B Glucose-methanol-choline oxidoreductase%2C C-terminal gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4150 Alide2_4151 Alide2_4151 Alide2_4151 4332324 4333523 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: vei:Veis_0291 extracellular ligand-binding receptor gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4151 Alide2_4152 Alide2_4152 Alide2_4152 4333652 4334572 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: axy:AXYL_06412 inner-membrane translocator 70 gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4152 Alide2_4153 Alide2_4153 Alide2_4153 4334569 4336383 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like%3B ABC transporter permease~KEGG: axy:AXYL_06411 inner-membrane translocator 69~SMART: ATPase%2C AAA+ type%2C core gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4153 Alide2_4154 Alide2_4154 Alide2_4154 4336373 4337095 + Fe(3+)-transporting ATPase PFAM: ABC transporter-like~KEGG: axy:AXYL_06410 ABC transporter family protein 103~SMART: ATPase%2C AAA+ type%2C core gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4154 Alide2_4155 Alide2_4155 Alide2_4155 4337263 4338873 + Choline dehydrogenase KEGG: vei:Veis_0287 glucose-methanol-choline oxidoreductase~PFAM: Glucose-methanol-choline oxidoreductase%2C N-terminal%3B Glucose-methanol-choline oxidoreductase%2C C-terminal gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4155 Alide2_4156 Alide2_4156 Alide2_4156 4338884 4340542 + Long-chain-fatty-acid--CoA ligase KEGG: ajs:Ajs_3769 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4156 Alide2_4157 Alide2_4157 Alide2_4157 4340572 4341960 - transcriptional regulator%2C GntR family with aminotransferase domain KEGG: ctt:CtCNB1_3118 transcriptional regulator%2C GntR family~PFAM: Aminotransferase%2C class I/classII%3B HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4157 Alide2_4158 Alide2_4158 Alide2_4158 4342025 4343317 + hydroxymethylglutaryl-CoA reductase%2C degradative TIGRFAM: Hydroxymethylglutaryl-CoA reductase%2C bacterial type~KEGG: xtr:100492358 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like~PFAM: Hydroxymethylglutaryl-CoA reductase%2C class I/II gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4158 Alide2_4159 Alide2_4159 Alide2_4159 4343377 4344039 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: dia:Dtpsy_3047 HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase-like hydrolase gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4159 Alide2_4160 Alide2_4160 Alide2_4160 4344036 4346075 - diguanylate cyclase with PAS/PAC sensor TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate cyclase%2C predicted%3B PAS fold-3~KEGG: dia:Dtpsy_3048 diguanylate cyclase with PAS/PAC sensor~SMART: Diguanylate cyclase%2C predicted gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4160 Alide2_4161 Alide2_4161 Alide2_4161 4346181 4347692 + ABC-type transporter%2C periplasmic subunit PFAM: Bacterial extracellular solute-binding protein%2C family 5~KEGG: dia:Dtpsy_3049 extracellular solute-binding protein family 5 gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4161 Alide2_4162 Alide2_4162 Alide2_4162 4347940 4348731 + hypothetical protein KEGG: rfr:Rfer_2484 hypothetical protein gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4162 Alide2_4163 Alide2_4163 Alide2_4163 4348734 4351694 - diguanylate cyclase/phosphodiesterase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted~KEGG: rfr:Rfer_2485 diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4163 Alide2_4164 Alide2_4164 Alide2_4164 4351827 4352222 - hypothetical protein KEGG: dac:Daci_5982 hypothetical protein gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4164 Alide2_4165 Alide2_4165 Alide2_4165 4352219 4352920 - hypothetical protein KEGG: pna:Pnap_0218 hypothetical protein gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4165 Alide2_4166 Alide2_4166 Alide2_4166 4353014 4353508 + protein of unknown function DUF421 PFAM: Protein of unknown function DUF421~KEGG: aav:Aave_4363 hypothetical protein gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4166 Alide2_4167 Alide2_4167 Alide2_4167 4353789 4354604 + transcriptional regulator%2C IclR family PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~KEGG: axy:AXYL_04090 transcriptional regulator family protein 21 gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4167 Alide2_4168 Alide2_4168 Alide2_4168 4354601 4355305 + Dipeptidase E KEGG: aav:Aave_4364 peptidase E~PFAM: Peptidase S51 gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4168 Alide2_4169 Alide2_4169 Alide2_4169 4355336 4356238 + protein of unknown function DUF1177 PFAM: Protein of unknown function DUF1177~KEGG: axy:AXYL_04088 hypothetical protein gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4169 Alide2_4170 Alide2_4170 Alide2_4170 4356235 4356912 + AroM family protein PFAM: Uncharacterised protein family AroM~KEGG: axy:AXYL_04087 AroM family protein gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4170 Alide2_4171 Alide2_4171 Alide2_4171 4356947 4357927 + extra-cytoplasmic solute receptor family protein 94 KEGG: axy:AXYL_04086 extra-cytoplasmic solute receptor family protein 94 gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4171 Alide2_4172 Alide2_4172 Alide2_4172 4357937 4358730 - pseudogene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4172 Alide2_4173 Alide2_4173 Alide2_4173 4358748 4359164 + pseudogene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4173 Alide2_4174 Alide2_4174 Alide2_4174 4359305 4360435 - Butyryl-CoA dehydrogenase KEGG: ajs:Ajs_3774 acyl-CoA dehydrogenase domain-containing protein~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4174 Alide2_4175 Alide2_4175 Alide2_4175 4360459 4361127 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: dia:Dtpsy_3053 short chain dehydrogenase gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4175 Alide2_4176 Alide2_4176 Alide2_4176 4361197 4362387 - acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: ctt:CtCNB1_0487 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4176 Alide2_4177 Alide2_4177 Alide2_4177 4362384 4364210 - Isocitrate dehydrogenase kinase/phosphatase HAMAP: Isocitrate dehydrogenase kinasephosphatase~KEGG: ajs:Ajs_3777 bifunctional isocitrate dehydrogenase kinase/phosphatase protein~PFAM: Isocitrate dehydrogenase kinasephosphatase gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4177 Alide2_4178 Alide2_4178 Alide2_4178 4364263 4364928 - Carbonate dehydratase PFAM: Carbonic anhydrase~KEGG: dia:Dtpsy_3056 carbonate dehydratase~SMART: Carbonic anhydrase gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4178 Alide2_4179 Alide2_4179 Alide2_4179 4364982 4366172 - Isovaleryl-CoA dehydrogenase KEGG: ajs:Ajs_3779 isovaleryl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4179 Alide2_4180 Alide2_4180 Alide2_4180 4366312 4366719 - transcriptional regulator%2C MerR family KEGG: dia:Dtpsy_3058 transcriptional regulator%2C MerR family~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4180 Alide2_4181 Alide2_4181 Alide2_4181 4372630 4374516 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: ajs:Ajs_3785 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4181 Alide2_4182 Alide2_4182 Alide2_4182 4374520 4375629 - response regulator receiver modulated CheB methylesterase PFAM: Signal transduction response regulator%2C chemotaxis%2C protein-glutamate methylesterase%3B Signal transduction response regulator%2C receiver domain~KEGG: dia:Dtpsy_3060 response regulator receiver modulated CheB methylesterase~SMART: Signal transduction response regulator%2C receiver domain gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4182 Alide2_4183 Alide2_4183 Alide2_4183 4375676 4376413 - CheD KEGG: ajs:Ajs_3787 chemoreceptor glutamine deamidase CheD~PFAM: Chemoreceptor glutamine deamidase CheD gene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4183 Alide2_4184 Alide2_4184 Alide2_4184 4376430 4377344 - MCP methyltransferase%2C CheR-type PFAM: MCP methyltransferase%2C CheR-type%2C SAM-binding domain%2C C-terminal%3B MCP methyltransferase%2C CheR-type%2C all-alpha domain%2C N-terminal~KEGG: dia:Dtpsy_3062 MCP methyltransferase%2C CheR-type~SMART: MCP methyltransferase%2C CheR-type gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4184 Alide2_4185 Alide2_4185 Alide2_4185 4377344 4377826 - CheW protein KEGG: dia:Dtpsy_3063 CheW protein~PFAM: CheW-like protein~SMART: CheW-like protein gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4185 Alide2_4186 Alide2_4186 Alide2_4186 4377861 4379960 - CheA signal transduction histidine kinase KEGG: ajs:Ajs_3790 CheA signal transduction histidine kinases~PFAM: CheW-like protein%3B ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup%2C homodimeric%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain~SMART: CheW-like protein%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain%3B ATPase-like%2C ATP-binding domain gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4186 Alide2_4187 Alide2_4187 Alide2_4187 4380017 4380379 - response regulator receiver protein KEGG: dia:Dtpsy_3065 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4187 Alide2_4188 Alide2_4188 Alide2_4188 4380439 4380885 - hypothetical protein KEGG: dia:Dtpsy_3066 hypothetical protein gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4188 Alide2_4189 Alide2_4189 Alide2_4189 4380959 4382080 + response regulator receiver sensor signal transduction histidine kinase KEGG: ajs:Ajs_3793 response regulator receiver sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 3%2C dimerisation and phosphoacceptor domain%3B Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain%3B ATPase-like%2C ATP-binding domain gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4189 Alide2_4190 Alide2_4190 Alide2_4190 4382077 4382706 + two component transcriptional regulator%2C LuxR family KEGG: dia:Dtpsy_3068 two component transcriptional regulator%2C LuxR family~PFAM: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4190 Alide2_4191 Alide2_4191 Alide2_4191 4382791 4383555 - flagellar biosynthetic protein FliR KEGG: ajs:Ajs_3795 flagellar biosynthetic protein FliR~TIGRFAM: Flagellar biosynthesis protein FliR~PFAM: Type III secretion system inner membrane R protein gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4191 Alide2_4192 Alide2_4192 Alide2_4192 4383552 4383821 - flagellar biosynthetic protein FliQ KEGG: ajs:Ajs_3796 flagellar biosynthetic protein FliQ~TIGRFAM: Flagellar biosynthesis protein FliQ~PFAM: Bacterial export protein FliQ%2C family 3 gene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4192 Alide2_4193 Alide2_4193 Alide2_4193 4383832 4384587 - flagellar biosynthetic protein FliP KEGG: ajs:Ajs_3797 flagellar biosynthesis protein FliP~TIGRFAM: Flagellar transport protein FliP~PFAM: Type III secretion system inner membrane P protein gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4193 Alide2_4194 Alide2_4194 Alide2_4194 4384580 4384948 - Flagellar biosynthesis protein%2C FliO PFAM: Flagellar biosynthesis protein%2C FliO~KEGG: dia:Dtpsy_3072 flagellar biosynthesis protein FliO gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4194 Alide2_4195 Alide2_4195 Alide2_4195 4384932 4385387 - flagellar motor switch protein FliN KEGG: dia:Dtpsy_3073 flagellar motor switch protein FliN~TIGRFAM: Flagellar motor switch FliN~PFAM: Surface presentation of antigen (SpoA) gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4195 Alide2_4196 Alide2_4196 Alide2_4196 4385377 4386381 - flagellar motor switch protein FliM KEGG: dia:Dtpsy_3074 flagellar motor switch protein FliM~TIGRFAM: Flagellar motor switch protein FliM~PFAM: Flagellar motor switch protein FliM%3B Surface presentation of antigen (SpoA) gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4196 Alide2_4197 Alide2_4197 Alide2_4197 4386388 4386963 - flagellar basal body-associated protein FliL PFAM: Flagellar basal body-associated protein FliL~KEGG: dia:Dtpsy_3075 flagellar basal body-associated protein FliL gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4197 Alide2_4198 Alide2_4198 Alide2_4198 4387129 4388496 - Flagellar hook-length control protein-like protein PFAM: Flagellar hook-length control protein-like%2C C-terminal domain~KEGG: ajs:Ajs_3802 flagellar hook-length control protein gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4198 Alide2_4199 Alide2_4199 Alide2_4199 4388499 4388963 - flagellar export protein FliJ KEGG: dia:Dtpsy_3077 flagellar export protein FliJ~TIGRFAM: Flagellar export FliJ~PFAM: Flagellar export FliJ gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4199 Alide2_4200 Alide2_4200 Alide2_4200 4389015 4390418 - flagellar protein export ATPase FliI SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Flagellar export ATPase%2C FliI%2C clade 1%3B ATPase%2C type III secretion system%2C FliI/YscN~KEGG: dia:Dtpsy_3078 ATPase FliI/YscN~PFAM: ATPase%2C alpha/beta subunit%2C nucleotide-binding domain gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4200 Alide2_4201 Alide2_4201 Alide2_4201 4390408 4391133 - Flagellar assembly protein FliH/Type III secretion system HrpE PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE~KEGG: dia:Dtpsy_3079 flagellar assembly protein FliH gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4201 Alide2_4202 Alide2_4202 Alide2_4202 4391155 4392150 - flagellar motor switch protein FliG KEGG: dia:Dtpsy_3080 flagellar motor switch protein FliG~TIGRFAM: Flagellar motor switch protein FliG~PFAM: Flagellar motor switch protein FliG%2C C-terminal gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4202 Alide2_4203 Alide2_4203 Alide2_4203 4392181 4393875 - flagellar M-ring protein FliF KEGG: dia:Dtpsy_3081 flagellar M-ring protein FliF~TIGRFAM: Flagellar FliF M-ring protein~PFAM: Secretory protein YscJ/FliF%3B Flagellar M-ring C-terminal gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4203 Alide2_4204 Alide2_4204 Alide2_4204 4394051 4394362 + flagellar hook-basal body complex subunit FliE KEGG: dia:Dtpsy_3082 flagellar hook-basal body complex subunit FliE~TIGRFAM: Flagellar hook-basal body complex protein FliE~PFAM: Flagellar hook-basal body complex protein FliE gene gene4263 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4204 Alide2_4205 Alide2_4205 Alide2_4205 4394578 4394877 - flagellar export chaperone PFAM: Flagellar export chaperone%2C FliT~KEGG: dia:Dtpsy_3083 flagellar protein FliT gene gene4264 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4205 Alide2_4206 Alide2_4206 Alide2_4206 4394881 4395321 - flagellar protein FliS KEGG: dia:Dtpsy_3084 flagellar protein FliS~TIGRFAM: Flagellar protein FliS~PFAM: Flagellar protein FliS gene gene4265 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4206 Alide2_4207 Alide2_4207 Alide2_4207 4395388 4396833 - flagellar hook-associated 2 domain-containing protein PFAM: Flagellar hook-associated 2%2C C-terminal%3B Flagellar hook-associated protein 2%2C N-terminal%3B Flagellin hook%2C IN motif~KEGG: aav:Aave_4399 flagellar hook-associated 2 domain-containing protein gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4207 Alide2_4208 Alide2_4208 Alide2_4208 4397066 4398526 - flagellin domain protein PFAM: Flagellin%2C D0/D1 domain%3B Flagellin hook%2C IN motif~KEGG: aav:Aave_4400 flagellin domain-containing protein gene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4208 Alide2_4209 Alide2_4209 Alide2_4209 4398861 4400330 + flagellin domain protein PFAM: Flagellin%2C D0/D1 domain%3B Flagellin hook%2C IN motif~KEGG: aav:Aave_4401 flagellin domain-containing protein gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4209 Alide2_4210 Alide2_4210 Alide2_4210 4400492 4405501 - glycosyl transferase family 2 KEGG: psa:PST_1402 hypothetical protein~manually curated~PFAM: Glycosyl transferase%2C family 2%3B Capsule polysaccharide biosynthesis gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4210 Alide2_4211 Alide2_4211 Alide2_4211 4405501 4406790 - Dimethylmenaquinone methyltransferase PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase%3B Acylneuraminate cytidylyltransferase~KEGG: syd:Syncc9605_2247 demethylmenaquinone methyltransferase-like gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4211 Alide2_4212 Alide2_4212 Alide2_4212 4407385 4408245 + flagellar motor stator protein MotA KEGG: dia:Dtpsy_3088 MotA/TolQ/ExbB proton channel~TIGRFAM: Flagellar motor stator%2C MotA~PFAM: MotA/TolQ/ExbB proton channel gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4212 Alide2_4213 Alide2_4213 Alide2_4213 4408264 4409199 + OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: dia:Dtpsy_3089 OmpA/MotB domain protein gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4213 Alide2_4214 Alide2_4214 Alide2_4214 4409269 4409655 + response regulator receiver protein KEGG: dia:Dtpsy_3090 response regulator receiver protein~PFAM: Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4214 Alide2_4215 Alide2_4215 Alide2_4215 4409658 4410290 + chemotaxis phosphatase%2C CheZ PFAM: Chemotaxis phosphatase%2C CheZ~KEGG: ajs:Ajs_3818 chemotaxis phosphatase%2C CheZ gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4215 Alide2_4216 Alide2_4216 Alide2_4216 4410387 4411547 + type III secretion exporter PFAM: Type III secretion exporter~KEGG: dia:Dtpsy_3092 type III secretion exporter gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4216 Alide2_4217 Alide2_4217 Alide2_4217 4411544 4413634 + flagellar biosynthesis protein FlhA KEGG: dia:Dtpsy_3093 flagellar biosynthesis protein FlhA~TIGRFAM: Flagellar biosynthesis protein FlhA~PFAM: Type III secretion system FHIPEP gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4217 Alide2_4218 Alide2_4218 Alide2_4218 4413631 4415193 + flagellar biosynthetic protein FlhF TIGRFAM: Signal-recognition particle (SRP)-type GTPase~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase~KEGG: ajs:Ajs_3821 GTP-binding signal recognition particle~SMART: ATPase%2C AAA+ type%2C core gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4218 Alide2_4219 Alide2_4219 Alide2_4219 4415183 4415986 + hypothetical protein KEGG: ajs:Ajs_3822 hypothetical protein gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4219 Alide2_4220 Alide2_4220 Alide2_4220 4415992 4416708 + RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG KEGG: dia:Dtpsy_3096 RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG~TIGRFAM: RNA polymerase sigma factor%2C FliA/WhiG%3B RNA polymerase sigma-70~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 3%3B RNA polymerase sigma-70 region 4 gene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4220 Alide2_4221 Alide2_4221 Alide2_4221 4416838 4417176 - hypothetical protein KEGG: ajs:Ajs_3824 hypothetical protein gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4221 Alide2_4222 Alide2_4222 Alide2_4222 4417212 4417535 - flagellar biosynthesis anti-sigma factor protein FlgM KEGG: dia:Dtpsy_3098 anti-sigma-28 factor%2C FlgM~TIGRFAM: Anti-sigma-28 factor%2C FlgM~PFAM: Anti-sigma-28 factor%2C FlgM gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4222 Alide2_4223 Alide2_4223 Alide2_4223 4417629 4418375 - flagella basal body P-ring formation protein FlgA TIGRFAM: Flagella basal body P-ring formation protein FlgA~PFAM: SAF domain~KEGG: dia:Dtpsy_3099 flagella basal body P-ring formation protein FlgA~SMART: SAF domain gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4223 Alide2_4224 Alide2_4224 Alide2_4224 4418558 4418974 + flagellar basal-body rod protein FlgB KEGG: ajs:Ajs_3827 flagellar basal-body rod protein FlgB~TIGRFAM: Flagellar basal-body rod protein FlgB~PFAM: Flagellar basal body rod protein%2C N-terminal gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4224 Alide2_4225 Alide2_4225 Alide2_4225 4418986 4419390 + flagellar basal-body rod protein FlgC KEGG: dia:Dtpsy_3101 flagellar basal-body rod protein FlgC~TIGRFAM: Flagellar basal-body rod protein FlgC~PFAM: Domain of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal gene gene4284 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4225 Alide2_4226 Alide2_4226 Alide2_4226 4419406 4420068 + flagellar hook capping protein PFAM: Flagellar hook capping protein~KEGG: dia:Dtpsy_3102 flagellar hook capping protein gene gene4285 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4226 Alide2_4227 Alide2_4227 Alide2_4227 4420105 4421385 + flagellar hook-basal body protein KEGG: aav:Aave_4423 hypothetical protein~TIGRFAM: Fagellar hook-basal body protein%2C FlgE/F/G~PFAM: Flagellar basal body FlaE%3B Domain of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal gene gene4286 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4227 Alide2_4228 Alide2_4228 Alide2_4228 4421411 4422151 + flagellar basal-body rod protein FlgF KEGG: dia:Dtpsy_3104 flagellar basal-body rod protein FlgF~TIGRFAM: Flagellar basal-body rod FlgF%3B Fagellar hook-basal body protein%2C FlgE/F/G~PFAM: Flagellar basal body rod protein%2C N-terminal gene gene4287 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4228 Alide2_4229 Alide2_4229 Alide2_4229 4422176 4422958 + flagellar basal-body rod protein FlgG KEGG: dia:Dtpsy_3105 flagellar basal-body rod protein FlgG~TIGRFAM: Flagellar basal-body rod FlgG%3B Fagellar hook-basal body protein%2C FlgE/F/G~PFAM: Domain of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal gene gene4288 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4229 Alide2_4230 Alide2_4230 Alide2_4230 4422973 4423656 + flagellar L-ring protein PFAM: Flagellar L-ring protein~KEGG: aav:Aave_4426 flagellar L-ring protein gene gene4289 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4230 Alide2_4231 Alide2_4231 Alide2_4231 4423851 4424996 + flagellar P-ring protein PFAM: Flagellar P-ring protein~KEGG: aav:Aave_4428 flagellar basal body P-ring protein gene gene4290 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4231 Alide2_4232 Alide2_4232 Alide2_4232 4424996 4425934 + flagellar rod assembly protein/muramidase FlgJ KEGG: ajs:Ajs_3836 flagellar rod assembly protein/muramidase FlgJ~TIGRFAM: Flagellar protein FlgJ type-2~PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase%3B Flagellar protein FlgJ%2C N-terminal gene gene4291 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4232 Alide2_4233 Alide2_4233 Alide2_4233 4425946 4427928 + flagellar hook-associated protein FlgK KEGG: dia:Dtpsy_3110 flagellar hook-associated protein FlgK~TIGRFAM: Flagellar hook-associated protein%2C FlgK~PFAM: Domain of unknown function DUF1078%2C C-terminal%3B Flagellar basal body rod protein%2C N-terminal gene gene4292 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4233 Alide2_4234 Alide2_4234 Alide2_4234 4427930 4429180 + flagellar hook-associated protein 3 KEGG: aav:Aave_4431 flagellar hook-associated protein 3~TIGRFAM: Flagellar hook-associated protein 3~PFAM: Flagellin%2C D0/D1 domain gene gene4293 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4234 Alide2_4235 Alide2_4235 Alide2_4235 4429257 4430471 + putative signal transduction protein PFAM: Metal-dependent hydrolase HDOD~KEGG: ajs:Ajs_3839 putative signal transduction protein gene gene4294 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4235 Alide2_4236 Alide2_4236 Alide2_4236 4430617 4431612 + 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase%2C NPD~KEGG: ajs:Ajs_3841 2-nitropropane dioxygenase%2C NPD gene gene4295 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4236 Alide2_4237 Alide2_4237 Alide2_4237 4431658 4433097 - transcriptional regulator%2C GntR family with aminotransferase domain KEGG: dia:Dtpsy_3115 transcriptional regulator%2C GntR family with aminotransferase domain~PFAM: HTH transcriptional regulator%2C GntR%3B Aminotransferase%2C class I/classII~SMART: HTH transcriptional regulator%2C GntR gene gene4296 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4237 Alide2_4238 Alide2_4238 Alide2_4238 4433217 4433816 + Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: ajs:Ajs_3843 hypothetical protein gene gene4297 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4238 Alide2_4239 Alide2_4239 Alide2_4239 4433813 4434745 + protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: vap:Vapar_0746 protein of unknown function DUF6 transmembrane gene gene4298 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4239 Alide2_4240 Alide2_4240 Alide2_4240 4434860 4436041 + putative transcriptional regulator%2C GntR family PFAM: Aminotransferase%2C class I/classII~KEGG: ajs:Ajs_3845 GntR family transcriptional regulator gene gene4299 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4240 Alide2_4241 Alide2_4241 Alide2_4241 4436056 4436931 + phenazine biosynthesis protein PhzF family KEGG: dia:Dtpsy_3119 phenazine biosynthesis protein PhzF family~TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein~PFAM: Phenazine biosynthesis PhzC/PhzF protein gene gene4300 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4241 Alide2_4242 Alide2_4242 Alide2_4242 4436928 4437902 + Threonine ammonia-lyase KEGG: dia:Dtpsy_3120 hypothetical protein~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene4301 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4242 Alide2_4243 Alide2_4243 Alide2_4243 4438099 4439187 + hypothetical protein KEGG: dia:Dtpsy_3121 hypothetical protein gene gene4302 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4243 Alide2_4244 Alide2_4244 Alide2_4244 4439213 4440454 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dia:Dtpsy_3122 extracellular ligand-binding receptor gene gene4303 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4244 Alide2_4245 Alide2_4245 Alide2_4245 4440451 4441578 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: dia:Dtpsy_3123 short-chain dehydrogenase/reductase SDR gene gene4304 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4245 Alide2_4246 Alide2_4246 Alide2_4246 4441608 4442321 + Phosphoglycerate mutase KEGG: dia:Dtpsy_3124 phosphoglycerate mutase~PFAM: Histidine phosphatase superfamily%2C clade-1~SMART: Histidine phosphatase superfamily%2C clade-1 gene gene4305 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4246 Alide2_4247 Alide2_4247 Alide2_4247 4442312 4443502 - diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted~KEGG: pmy:Pmen_1813 diguanylate cyclase~SMART: Diguanylate cyclase%2C predicted gene gene4306 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4247 Alide2_4248 Alide2_4248 Alide2_4248 4443578 4444081 - nuclear export factor GLE1 PFAM: GLE1%2C N-terminal%2C bacteria~KEGG: vap:Vapar_4773 protein of unknown function DUF461 gene gene4307 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4248 Alide2_4249 Alide2_4249 Alide2_4249 4444105 4446423 - TonB-dependent receptor PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug~KEGG: ctt:CtCNB1_0607 TonB-dependent receptor gene gene4308 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4249 Alide2_4250 Alide2_4250 Alide2_4250 4446583 4446930 - hypothetical protein KEGG: vap:Vapar_2119 hypothetical protein gene gene4309 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4250 Alide2_4251 Alide2_4251 Alide2_4251 4447026 4447883 - Creatininase PFAM: Creatininase~KEGG: dia:Dtpsy_3125 creatininase gene gene4310 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4251 Alide2_4252 Alide2_4252 Alide2_4252 4447900 4448880 - hypothetical protein KEGG: dac:Daci_0588 hypothetical protein gene gene4311 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4252 Alide2_4253 Alide2_4253 Alide2_4253 4449161 4451263 + Protein-disulfide reductase KEGG: dia:Dtpsy_3127 cytochrome c biogenesis protein transmembrane region~PFAM: Cytochrome c assembly protein%2C transmembrane domain gene gene4312 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4253 Alide2_4254 Alide2_4254 Alide2_4254 4451283 4451879 + alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant~KEGG: vap:Vapar_0729 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen gene gene4313 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4254 Alide2_4255 Alide2_4255 Alide2_4255 4451916 4452662 - protein of unknown function DUF81 PFAM: Protein of unknown function DUF81~KEGG: har:HEAR3236 hypothetical protein gene gene4314 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4255 Alide2_4256 Alide2_4256 Alide2_4256 4452926 4453954 + Peptidoglycan-binding domain 1 protein PFAM: Peptidoglycan binding-like%3B YkuD domain~KEGG: bpt:Bpet1138 peptidoglycan binding-like domain-containing protein gene gene4315 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4256 Alide2_4257 Alide2_4257 Alide2_4257 4453997 4455115 + uroporphyrinogen decarboxylase TIGRFAM: Uroporphyrinogen decarboxylase HemE~KEGG: ajs:Ajs_3861 uroporphyrinogen decarboxylase~PFAM: Uroporphyrinogen decarboxylase (URO-D) gene gene4316 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4257 Alide2_4258 Alide2_4258 Alide2_4258 4455731 4457839 + primosomal protein N' TIGRFAM: Primosomal protein n~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Helicase%2C C-terminal~KEGG: dia:Dtpsy_3135 primosomal protein N'~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal gene gene4317 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4258 Alide2_4259 Alide2_4259 Alide2_4259 4457902 4459089 - acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: dia:Dtpsy_0032 beta-ketothiolase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene4318 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4259 Alide2_4260 Alide2_4260 Alide2_4260 4459101 4459880 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: dac:Daci_0026 enoyl-CoA hydratase/isomerase gene gene4319 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4260 Alide2_4261 Alide2_4261 Alide2_4261 4459942 4461741 - Long-chain-fatty-acid--CoA ligase KEGG: dac:Daci_0027 AMP-dependent synthetase/ligase~PFAM: AMP-dependent synthetase/ligase gene gene4320 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4261 Alide2_4262 Alide2_4262 Alide2_4262 4461738 4462559 - ABC transporter related protein KEGG: xtr:100489501 high-affinity branched-chain amino acid transport ATP-binding protein livF-like~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene4321 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4262 Alide2_4263 Alide2_4263 Alide2_4263 4462568 4463749 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dac:Daci_0029 extracellular ligand-binding receptor gene gene4322 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4263 Alide2_4264 Alide2_4264 Alide2_4264 4463761 4464798 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: rfr:Rfer_4064 inner-membrane translocator gene gene4323 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4264 Alide2_4265 Alide2_4265 Alide2_4265 4464798 4465679 - ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dac:Daci_0031 inner-membrane translocator gene gene4324 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4265 Alide2_4266 Alide2_4266 Alide2_4266 4465676 4466530 - Sulfate-transporting ATPase PFAM: ABC transporter-like~KEGG: dac:Daci_0032 ABC transporter-like protein~SMART: ATPase%2C AAA+ type%2C core gene gene4325 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4266 Alide2_4267 Alide2_4267 Alide2_4267 4466664 4467371 + transcriptional regulator%2C TetR family PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: dac:Daci_0033 TetR family transcriptional regulator gene gene4326 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4267 Alide2_4268 Alide2_4268 Alide2_4268 4467366 4468370 - Auxin Efflux Carrier PFAM: Auxin efflux carrier~KEGG: ajs:Ajs_3864 auxin efflux carrier gene gene4327 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4268 Alide2_4269 Alide2_4269 Alide2_4269 4468473 4470533 + UvrD/REP helicase PFAM: DNA helicase%2C UvrD/REP type~KEGG: dia:Dtpsy_3138 UvrD/REP helicase gene gene4328 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4269 Alide2_4270 Alide2_4270 Alide2_4270 4470539 4470964 + hypothetical protein manually curated~KEGG: dia:Dtpsy_3139 hypothetical protein gene gene4329 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4270 Alide2_4271 Alide2_4271 Alide2_4271 4470961 4472130 + Phospholipase A(1) KEGG: dia:Dtpsy_3140 phospholipase A1~PFAM: Phospholipase A1 gene gene4330 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4271 Alide2_4272 Alide2_4272 Alide2_4272 4472143 4473270 - Sulphatase-modifying factor protein PFAM: Sulphatase-modifying factor~KEGG: axy:AXYL_03118 hypothetical protein gene gene4331 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4272 Alide2_4273 Alide2_4273 Alide2_4273 4473302 4475101 - sulfatase PFAM: Sulfatase~KEGG: axy:AXYL_03117 arylsulfatase gene gene4332 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4273 Alide2_4274 Alide2_4274 Alide2_4274 4475199 4476140 - Catechol 2%2C3-dioxygenase KEGG: axy:AXYL_03122 metapyrocatechase~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase gene gene4333 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4274 Alide2_4275 Alide2_4275 Alide2_4275 4476170 4477933 - 2%2C4-dichlorophenol 6-monooxygenase KEGG: reu:Reut_B4679 monooxygenase%2C FAD-binding~PFAM: Monooxygenase%2C FAD-binding gene gene4334 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4275 Alide2_4276 Alide2_4276 Alide2_4276 4477973 4478821 - Ureidoglycolate lyase KEGG: reu:Reut_B4678 5-oxopent-3-ene-1%2C2%2C5-tricarboxylate decarboxylase~PFAM: Fumarylacetoacetase%2C C-terminal-like gene gene4335 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4276 Alide2_4277 Alide2_4277 Alide2_4277 4478895 4480037 - porin KEGG: vap:Vapar_4252 porin gene gene4336 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4277 Alide2_4278 Alide2_4278 Alide2_4278 4480234 4480932 + transcriptional regulator%2C GntR family KEGG: axy:AXYL_03119 GntR family regulatory protein 35~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR gene gene4337 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4278 Alide2_4279 Alide2_4279 Alide2_4279 4481178 4481564 + hypothetical protein KEGG: dia:Dtpsy_3141 hypothetical protein gene gene4338 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4279 Alide2_4280 Alide2_4280 Alide2_4280 4481642 4482118 - UspA domain-containing protein PFAM: UspA~KEGG: dia:Dtpsy_3142 UspA domain protein gene gene4339 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4280 Alide2_4281 Alide2_4281 Alide2_4281 4482178 4483350 + Queuine tRNA-ribosyltransferase PFAM: Queuine/other tRNA-ribosyltransferase~TIGRFAM: Queuine tRNA-ribosyltransferase%3B Queuine/other tRNA-ribosyltransferase~HAMAP: Queuine tRNA-ribosyltransferase~KEGG: dia:Dtpsy_3143 queuine tRNA-ribosyltransferase gene gene4340 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4281 Alide2_4282 Alide2_4282 Alide2_4282 4483355 4484398 - hypothetical protein KEGG: dia:Dtpsy_3145 hypothetical protein gene gene4341 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4282 Alide2_4283 Alide2_4283 Alide2_4283 4484521 4484934 + PAS sensor protein TIGRFAM: PAS~PFAM: PAS fold~KEGG: dar:Daro_3803 PAS~SMART: PAS%3B PAC motif gene gene4342 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4283 Alide2_4284 Alide2_4284 Alide2_4284 4485379 4486209 + 6-phosphogluconate dehydrogenase NAD-binding protein PFAM: 6-phosphogluconate dehydrogenase%2C NAD-binding~KEGG: dac:Daci_4431 6-phosphogluconate dehydrogenase NAD-binding gene gene4343 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4284 Alide2_4285 Alide2_4285 Alide2_4285 4486259 4487227 + hypothetical protein KEGG: dac:Daci_4430 hypothetical protein gene gene4344 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4285 Alide2_4286 Alide2_4286 Alide2_4286 4487346 4488326 + hypothetical protein KEGG: dac:Daci_5794 hypothetical protein gene gene4345 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4286 Alide2_4287 Alide2_4287 Alide2_4287 4488380 4489054 + Dimethylmenaquinone methyltransferase PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase~KEGG: dac:Daci_4429 hypothetical protein gene gene4346 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4287 Alide2_4288 Alide2_4288 Alide2_4288 4489023 4489718 - transcriptional regulator%2C GntR family KEGG: bpt:Bpet0387 GntR family transcriptional regulator~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR gene gene4347 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4288 Alide2_4289 Alide2_4289 Alide2_4289 4489738 4491681 - phospholipid/glycerol acyltransferase KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase~PFAM: Phospholipid/glycerol acyltransferase%3B Major facilitator superfamily MFS-1~SMART: Phospholipid/glycerol acyltransferase gene gene4348 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4289 Alide2_4290 Alide2_4290 Alide2_4290 4491871 4493751 + ATP-dependent metalloprotease FtsH SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Peptidase M41%2C FtsH~KEGG: pna:Pnap_0392 ATP-dependent metalloprotease FtsH~PFAM: ATPase%2C AAA-type%2C core%3B Peptidase M41%2C FtsH extracellular%3B Peptidase M41 gene gene4349 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4290 Alide2_4291 Alide2_4291 Alide2_4291 4493840 4494406 + phosphoribosyltransferase PFAM: Phosphoribosyltransferase~KEGG: tbd:Tbd_0103 transcriptional regulator PyrR%2C putative gene gene4350 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4291 Alide2_4292 Alide2_4292 Alide2_4292 4494403 4495053 + phosphoribosyltransferase KEGG: rfr:Rfer_0394 phosphoribosyltransferase gene gene4351 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4292 Alide2_4293 Alide2_4293 Alide2_4293 4495055 4495705 - dienelactone hydrolase PFAM: Dienelactone hydrolase~KEGG: rfr:Rfer_0395 dienelactone hydrolase gene gene4352 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4293 Alide2_4294 Alide2_4294 Alide2_4294 4495713 4496696 - zinc-binding alcohol dehydrogenase family protein KEGG: azo:azo0111 putative alcohol dehydrogenase~TIGRFAM: Alcohol dehydrogenase%2C zinc-binding type 2~PFAM: Alcohol dehydrogenase GroES-like gene gene4353 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4294 Alide2_4295 Alide2_4295 Alide2_4295 4496911 4497900 + hypothetical protein KEGG: dia:Dtpsy_3156 hypothetical protein gene gene4354 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4295 Alide2_4296 Alide2_4296 Alide2_4296 4497923 4499389 + monooxygenase FAD-binding protein PFAM: Monooxygenase%2C FAD-binding~KEGG: ajs:Ajs_3884 FAD dependent oxidoreductase gene gene4355 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4296 Alide2_4297 Alide2_4297 Alide2_4297 4499386 4500492 + uncharacterized peroxidase-related enzyme KEGG: ajs:Ajs_3885 uncharacterized peroxidase-related enzyme~TIGRFAM: Uncharacterised peroxidase-related%3B Alkylhydroperoxidase AhpD core~PFAM: Carboxymuconolactone decarboxylase gene gene4356 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4297 Alide2_4298 Alide2_4298 Alide2_4298 4500552 4501802 - domain of unknown function DUF1745 KEGG: dia:Dtpsy_3160 domain of unknown function DUF1745~PFAM: FIST domain%2C N-terminal%3B FIST C domain~SMART: FIST domain%2C N-terminal gene gene4357 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4298 Alide2_4299 Alide2_4299 Alide2_4299 4501827 4502609 - hypothetical protein KEGG: dia:Dtpsy_3161 hypothetical protein gene gene4358 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4299 Alide2_4300 Alide2_4300 Alide2_4300 4502837 4503268 + histone family protein DNA-binding protein PFAM: Histone-like bacterial DNA-binding protein~KEGG: dia:Dtpsy_3162 histone family protein DNA-binding protein gene gene4359 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4300 Alide2_4301 Alide2_4301 Alide2_4301 4503326 4504078 - protein tyrosine/serine phosphatase KEGG: ajs:Ajs_3890 protein tyrosine/serine phosphatase gene gene4360 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4301 Alide2_4302 Alide2_4302 Alide2_4302 4504592 4504860 - pseudogene gene4361 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4302 Alide2_4303 Alide2_4303 Alide2_4303 4504874 4506151 - HipA N-terminal domain protein KEGG: neu:NE1310 HipA protein~TIGRFAM: HipA%2C N-terminal~PFAM: HipA-like%2C C-terminal%3B HipA-like%2C N-terminal gene gene4362 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4303 Alide2_4304 Alide2_4304 Alide2_4304 4506148 4506393 - transcriptional regulator%2C y4mF family TIGRFAM: Transcription regulator%2C HipB-like~PFAM: Helix-turn-helix type 3~KEGG: neu:NE1311 helix-hairpin-helix DNA-binding motif-containing protein~SMART: Helix-turn-helix type 3 gene gene4363 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4304 Alide2_4305 Alide2_4305 Alide2_4305 4506596 4506766 - pseudogene gene4364 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4305 Alide2_4306 Alide2_4306 Alide2_4306 4506780 4507817 - pseudogene gene4365 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4306 Alide2_4307 Alide2_4307 Alide2_4307 4508028 4509158 + putative transposase KEGG: pol:Bpro_2745 putative transposase gene gene4366 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4307 Alide2_4308 Alide2_4308 Alide2_4308 4509124 4509417 + hypothetical protein KEGG: pol:Bpro_2744 hypothetical protein gene gene4367 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4308 Alide2_4309 Alide2_4309 Alide2_4309 4509693 4510898 - transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: bvi:Bcep1808_6138 transposase%2C IS4 family protein gene gene4368 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4309 Alide2_4310 Alide2_4310 Alide2_4310 4510974 4511732 + hypothetical protein KEGG: pna:Pnap_4724 transposase gene gene4369 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4310 Alide2_4311 Alide2_4311 Alide2_4311 4511761 4512651 - hypothetical protein KEGG: ajs:Ajs_2099 putative signal peptide gene gene4370 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4311 Alide2_4312 Alide2_4312 Alide2_4312 4512753 4513505 - Cyclopentanol dehydrogenase KEGG: ajs:Ajs_2100 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene4371 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4312 Alide2_4313 Alide2_4313 Alide2_4313 4513578 4514492 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene4372 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4313 Alide2_4314 Alide2_4314 Alide2_4314 4514489 4514812 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene4373 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4314 Alide2_4315 Alide2_4315 Alide2_4315 4514972 4516498 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: axy:AXYL_06593 integrase family protein 10 gene gene4374 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4315 Alide2_4316 Alide2_4316 Alide2_4316 4516488 4517291 + IstB domain protein ATP-binding protein KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene4375 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4316 Alide2_4317 Alide2_4317 Alide2_4317 4517418 4517810 - cytochrome c class I KEGG: azc:AZC_0960 cytochrome c~manually curated~PFAM: Cytochrome c%2C class I gene gene4376 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4317 Alide2_4318 Alide2_4318 Alide2_4318 4518046 4519785 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal~KEGG: cwo:Cwoe_1511 fumarate reductase/succinate dehydrogenase flavoprotein domain protein gene gene4377 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4318 Alide2_4319 Alide2_4319 Alide2_4319 4519890 4520486 - carbon monoxide dehydrogenase subunit G PFAM: Carbon monoxide dehydrogenase subunit G~KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G gene gene4378 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4319 Alide2_4320 Alide2_4320 Alide2_4320 4520535 4523009 - Carbon-monoxide dehydrogenase (acceptor) KEGG: sti:Sthe_2310 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein~PFAM: Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding%3B Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead gene gene4379 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4320 Alide2_4321 Alide2_4321 Alide2_4321 4523006 4523503 - Carbon-monoxide dehydrogenase (acceptor) KEGG: tro:trd_0578 aldehyde oxidase small subunit~PFAM: [2Fe-2S]-binding%3B Ferredoxin gene gene4380 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4321 Alide2_4322 Alide2_4322 Alide2_4322 4523537 4524415 - Carbon-monoxide dehydrogenase (acceptor) KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein~PFAM: Molybdopterin dehydrogenase%2C FAD-binding gene gene4381 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4322 Alide2_4323 Alide2_4323 Alide2_4323 4524957 4525880 + peptidase S15 KEGG: cwo:Cwoe_3936 peptidase S15 gene gene4382 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4323 Alide2_4324 Alide2_4324 Alide2_4324 4526102 4527013 + ATPase associated with various cellular activities AAA_5 KEGG: ctt:CtCNB1_3512 ATPase associated with various cellular~PFAM: ATPase%2C AAA-5~SMART: ATPase%2C AAA+ type%2C core gene gene4383 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4324 Alide2_4325 Alide2_4325 Alide2_4325 4527031 4527519 + hypothetical protein KEGG: dac:Daci_2252 VWA containing CoxE family protein gene gene4384 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4325 Alide2_4326 Alide2_4326 Alide2_4326 4527537 4528088 + carbon monoxide dehydrogenase subunit G PFAM: Carbon monoxide dehydrogenase subunit G~KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G gene gene4385 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4326 Alide2_4327 Alide2_4327 Alide2_4327 4528091 4529131 + XshC-Cox1-family protein PFAM: XdhC- CoxI~KEGG: pol:Bpro_0572 hypothetical protein gene gene4386 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4327 Alide2_4328 Alide2_4328 Alide2_4328 4529131 4529805 + molybdenum cofactor cytidylyltransferase KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase gene gene4387 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4328 Alide2_4329 Alide2_4329 Alide2_4329 4529848 4529994 - pseudogene gene4388 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4329 Alide2_4330 Alide2_4330 Alide2_4330 4530013 4530108 - pseudogene gene4389 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4330 Alide2_4331 Alide2_4331 Alide2_4331 4530134 4530856 - regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: cak:Caul_0225 TetR family transcriptional regulator gene gene4390 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4331 Alide2_4332 Alide2_4332 Alide2_4332 4530853 4531764 - hypothetical protein KEGG: cti:RALTA_B1677 conserved hypothetical protein%3B UPF0065 gene gene4391 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4332 Alide2_4333 Alide2_4333 Alide2_4333 4532155 4533081 + peptidase S15 KEGG: cwo:Cwoe_3936 peptidase S15 gene gene4392 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4333 Alide2_4334 Alide2_4334 Alide2_4334 4533148 4534941 + acyl-CoA dehydrogenase domain-containing protein PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal~KEGG: slo:Shew_2868 acyl-CoA dehydrogenase domain-containing protein gene gene4393 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4334 Alide2_4335 Alide2_4335 Alide2_4335 4534938 4537037 + 3-hydroxybutyryl-CoA epimerase manually curated~KEGG: xtr:100493475 peroxisomal bifunctional enzyme-like~PFAM: 3-hydroxyacyl-CoA dehydrogenase%2C NAD binding%3B Crotonase%2C core%3B 3-hydroxyacyl-CoA dehydrogenase%2C C-terminal gene gene4394 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4335 Alide2_4336 Alide2_4336 Alide2_4336 4537034 4538221 + acetyl-CoA acetyltransferase TIGRFAM: Thiolase~KEGG: vap:Vapar_5357 acetyl-CoA acetyltransferase~PFAM: Thiolase%2C N-terminal%3B Thiolase%2C C-terminal gene gene4395 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4336 Alide2_4337 Alide2_4337 Alide2_4337 4538218 4538991 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: reu:Reut_C6403 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene4396 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4337 Alide2_4338 Alide2_4338 Alide2_4338 4538982 4540586 + o-succinylbenzoate--CoA ligase KEGG: psa:PST_1119 long-chain-fatty-acid--CoA ligase~PFAM: AMP-dependent synthetase/ligase gene gene4397 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4338 Alide2_4339 Alide2_4339 Alide2_4339 4540583 4542118 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: azc:AZC_1416 sugar ABC transporter ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene4398 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4339 Alide2_4340 Alide2_4340 Alide2_4340 4542120 4543064 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: reu:Reut_B4134 inner-membrane translocator gene gene4399 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4340 Alide2_4341 Alide2_4341 Alide2_4341 4543061 4544011 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: reu:Reut_B4135 inner-membrane translocator gene gene4400 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4341 Alide2_4342 Alide2_4342 Alide2_4342 4544051 4545031 + periplasmic binding protein/LacI transcriptional regulator PFAM: Periplasmic binding protein/LacI transcriptional regulator~KEGG: azc:AZC_1419 ABC transporter sugar-binding protein gene gene4401 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4342 Alide2_4343 Alide2_4343 Alide2_4343 4545229 4545561 + pseudogene gene4402 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4343 Alide2_4344 Alide2_4344 Alide2_4344 4545748 4547127 + transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: pol:Bpro_1661 IS4 family transposase gene gene4403 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4344 Alide2_4345 Alide2_4345 Alide2_4345 4547544 4548671 - pseudogene gene4404 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4345 Alide2_4346 Alide2_4346 Alide2_4346 4548864 4553138 + pseudogene gene4405 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4346 Alide2_4347 Alide2_4347 Alide2_4347 4549755 4550947 + pseudogene gene4406 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4347 Alide2_4348 Alide2_4348 Alide2_4348 4550944 4551876 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: tmz:Tmz1t_0371 integrase family protein gene gene4407 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4348 Alide2_4349 Alide2_4349 Alide2_4349 4551873 4552868 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage~KEGG: tmz:Tmz1t_0370 integrase family protein gene gene4408 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4349 Alide2_4350 Alide2_4350 Alide2_4350 4553149 4554339 + transposase PFAM: Transposase%2C IS801/IS1294~KEGG: pol:Bpro_4805 putative transposase gene gene4409 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4350 Alide2_4351 Alide2_4351 Alide2_4351 4554939 4555328 - 50S ribosomal protein L17 TIGRFAM: Ribosomal protein L17~HAMAP: Ribosomal protein L17~KEGG: dia:Dtpsy_0399 50S ribosomal protein L17~PFAM: Ribosomal protein L17 gene gene4411 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4351 Alide2_4352 Alide2_4352 Alide2_4352 4555417 4556412 - DNA-directed RNA polymerase%2C alpha subunit TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit~PFAM: RNA polymerase%2C alpha subunit%2C C-terminal%3B DNA-directed RNA polymerase%2C insert domain%3B DNA-directed RNA polymerase%2C dimerisation~KEGG: dia:Dtpsy_0398 DNA-directed RNA polymerase subunit alpha~SMART: DNA-directed RNA polymerase%2C RpoA/D/Rpb3-type gene gene4412 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4352 Alide2_4353 Alide2_4353 Alide2_4353 4556525 4557199 - ribosomal protein S4 TIGRFAM: Ribosomal protein S4%2C bacterial-type~PFAM: Ribosomal protein S4/S9%2C N-terminal%3B RNA-binding S4~KEGG: aav:Aave_0625 30S ribosomal protein S4~SMART: RNA-binding S4 gene gene4413 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4353 Alide2_4354 Alide2_4354 Alide2_4354 4557240 4557644 - 30S ribosomal protein S11 KEGG: aav:Aave_0624 30S ribosomal protein S11~TIGRFAM: Ribosomal protein S11%2C bacterial-type~PFAM: Ribosomal protein S11 gene gene4414 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4354 Alide2_4355 Alide2_4355 Alide2_4355 4557660 4558025 - 30S ribosomal protein S13 KEGG: dia:Dtpsy_0395 30S ribosomal protein S13~TIGRFAM: Ribosomal protein S13%2C bacterial-type~PFAM: Ribosomal protein S13 gene gene4415 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4355 Alide2_4356 Alide2_4356 Alide2_4356 4558049 4558162 - 50S ribosomal protein L36 TIGRFAM: Ribosomal protein L36~HAMAP: Ribosomal protein L36~KEGG: ctt:CtCNB1_4432 ribosomal protein L36~PFAM: Ribosomal protein L36 gene gene4416 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4356 Alide2_4357 Alide2_4357 Alide2_4357 4558310 4559629 - preprotein translocase%2C SecY subunit manually curated~TIGRFAM: SecY protein~KEGG: dia:Dtpsy_0393 preprotein translocase subunit SecY~PFAM: SecY protein gene gene4417 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4357 Alide2_4358 Alide2_4358 Alide2_4358 4559653 4560084 - ribosomal protein L15 KEGG: ctt:CtCNB1_4434 ribosomal protein L15~TIGRFAM: Ribosomal protein L15%2C bacterial-type~PFAM: Ribosomal protein L18e/L15 gene gene4418 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4358 Alide2_4359 Alide2_4359 Alide2_4359 4560095 4560277 - ribosomal protein L30 KEGG: dia:Dtpsy_0391 50S ribosomal protein L30~TIGRFAM: Ribosomal protein L30%2C bacterial-type~PFAM: Ribosomal protein L30%2C ferredoxin-like fold domain gene gene4419 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4359 Alide2_4360 Alide2_4360 Alide2_4360 4560290 4560811 - ribosomal protein S5 KEGG: dia:Dtpsy_0390 30S ribosomal protein S5~TIGRFAM: Ribosomal protein S5%2C bacterial-type~PFAM: Ribosomal protein S5%2C C-terminal%3B Ribosomal protein S5%2C N-terminal gene gene4420 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4360 Alide2_4361 Alide2_4361 Alide2_4361 4560827 4561192 - ribosomal protein L18 KEGG: dia:Dtpsy_0389 50S ribosomal protein L18~TIGRFAM: Ribosomal protein L18%2C bacterial~PFAM: Ribosomal protein L18/L5 gene gene4421 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4361 Alide2_4362 Alide2_4362 Alide2_4362 4561204 4561737 - ribosomal protein L6 KEGG: dia:Dtpsy_0388 50S ribosomal protein L6~TIGRFAM: Ribosomal protein L6%2C bacterial-type~PFAM: Ribosomal protein L6%2C alpha-beta domain gene gene4422 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4362 Alide2_4363 Alide2_4363 Alide2_4363 4561762 4562157 - ribosomal protein S8 PFAM: Ribosomal protein S8~KEGG: aav:Aave_0615 30S ribosomal protein S8 gene gene4423 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4363 Alide2_4364 Alide2_4364 Alide2_4364 4562179 4562484 - 30S ribosomal protein S14 KEGG: dia:Dtpsy_0386 30S ribosomal protein S14~HAMAP: Ribosomal protein S14%2C bacterial/plastid~PFAM: Ribosomal protein S14 gene gene4424 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4364 Alide2_4365 Alide2_4365 Alide2_4365 4562494 4563033 - ribosomal protein L5 PFAM: Ribosomal protein L5~KEGG: dia:Dtpsy_0385 50S ribosomal protein L5 gene gene4425 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4365 Alide2_4366 Alide2_4366 Alide2_4366 4563043 4563363 - ribosomal protein L24 TIGRFAM: Ribosomal protein L24~PFAM: KOW~KEGG: dia:Dtpsy_0384 50S ribosomal protein L24~SMART: KOW gene gene4426 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4366 Alide2_4367 Alide2_4367 Alide2_4367 4563374 4563742 - ribosomal protein L14 KEGG: dia:Dtpsy_0383 50S ribosomal protein L14~TIGRFAM: Ribosomal protein L14%2C bacterial-type~PFAM: Ribosomal protein L14b/L23e gene gene4427 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4367 Alide2_4368 Alide2_4368 Alide2_4368 4563950 4565548 - Glycerol-3-phosphate dehydrogenase KEGG: aav:Aave_0610 FAD dependent oxidoreductase~PFAM: FAD dependent oxidoreductase gene gene4428 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4368 Alide2_4369 Alide2_4369 Alide2_4369 4565671 4566432 + transcriptional regulator%2C DeoR family KEGG: ajs:Ajs_0383 DeoR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C DeoR%3B HTH transcriptional regulator%2C DeoR N-terminal~SMART: HTH transcriptional regulator%2C DeoR N-terminal gene gene4429 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4369 Alide2_4370 Alide2_4370 Alide2_4370 4566454 4567959 + Glycerol kinase PFAM: Carbohydrate kinase%2C FGGY%2C N-terminal%3B Carbohydrate kinase%2C FGGY%2C C-terminal~TIGRFAM: Glycerol kinase~HAMAP: Glycerol kinase~KEGG: dia:Dtpsy_0373 glycerol kinase gene gene4430 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4370 Alide2_4371 Alide2_4371 Alide2_4371 4568116 4568955 + pyrroline-5-carboxylate reductase TIGRFAM: Pyrroline-5-carboxylate reductase~KEGG: dia:Dtpsy_0372 pyrroline-5-carboxylate reductase~PFAM: NADP oxidoreductase%2C coenzyme F420-dependent gene gene4431 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4371 Alide2_4372 Alide2_4372 Alide2_4372 4569055 4570830 + Spore coat protein CotH PFAM: Spore coat protein CotH~KEGG: glo:Glov_2109 spore coat protein CotH gene gene4432 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4372 Alide2_4373 Alide2_4373 Alide2_4373 4570837 4571709 - 4-hydroxybenzoate octaprenyltransferase TIGRFAM: 4-hydroxybenzoate polyprenyl transferase~HAMAP: 4-hydroxybenzoate polyprenyl transferase~KEGG: dia:Dtpsy_0371 4-hydroxybenzoate polyprenyl transferase~PFAM: UbiA prenyltransferase gene gene4433 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4373 Alide2_4374 Alide2_4374 Alide2_4374 4572276 4574170 + pseudogene gene4434 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4374 Alide2_4375 Alide2_4375 Alide2_4375 4574381 4574920 - Ferritin Dps family protein PFAM: Ferritin/Dps protein~KEGG: dia:Dtpsy_0369 ferritin Dps family protein gene gene4435 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4375 Alide2_4376 Alide2_4376 Alide2_4376 4575020 4575985 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_0368 transcriptional regulator%2C LysR family gene gene4436 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4376 Alide2_4377 Alide2_4377 Alide2_4377 4576031 4578148 - ATP-dependent DNA helicase RecG TIGRFAM: DNA helicase%2C ATP-dependent%2C RecG~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type%3B Helicase%2C C-terminal~KEGG: ajs:Ajs_0376 ATP-dependent DNA helicase RecG~SMART: DEAD-like helicase%2C N-terminal%3B Helicase%2C C-terminal gene gene4437 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4377 Alide2_4378 Alide2_4378 Alide2_4378 4578325 4579590 + metal dependent phosphohydrolase TIGRFAM: Uncharacterised protein family HDIG~PFAM: Metal-dependent phosphohydrolase%2C HD subdomain~KEGG: dia:Dtpsy_0366 metal dependent phosphohydrolase~SMART: Metal-dependent phosphohydrolase%2C HD domain gene gene4438 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4378 Alide2_4379 Alide2_4379 Alide2_4379 4579679 4580782 + S-adenosylmethionine/tRNA-ribosyltransferase-isomerase KEGG: dia:Dtpsy_0365 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase~TIGRFAM: Queuosine biosynthesis protein~PFAM: Queuosine biosynthesis protein gene gene4439 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4379 Alide2_4380 Alide2_4380 Alide2_4380 4580931 4581812 + protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: ajs:Ajs_0373 hypothetical protein gene gene4440 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4380 Alide2_4381 Alide2_4381 Alide2_4381 4581871 4583478 - Gamma-glutamyltransferase KEGG: ctt:CtCNB1_4698 gamma-glutamyltranspeptidase~PFAM: Gamma-glutamyltranspeptidase gene gene4441 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4381 Alide2_4382 Alide2_4382 Alide2_4382 4583484 4584446 - hypothetical protein KEGG: vei:Veis_0179 hypothetical protein gene gene4442 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4382 Alide2_4383 Alide2_4383 Alide2_4383 4584573 4585478 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: vei:Veis_0178 LysR family transcriptional regulator gene gene4443 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4383 Alide2_4384 Alide2_4384 Alide2_4384 4585487 4586203 - Uracil-DNA glycosylase TIGRFAM: Uracil-DNA glycosylase~HAMAP: Uracil-DNA glycosylase~KEGG: dia:Dtpsy_0363 uracil-DNA glycosylase~PFAM: Uracil-DNA glycosylase-like gene gene4444 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4384 Alide2_4385 Alide2_4385 Alide2_4385 4586264 4587064 - Indole-3-glycerol-phosphate synthase KEGG: dia:Dtpsy_0361 indole-3-glycerol-phosphate synthase~PFAM: Indole-3-glycerol phosphate synthase gene gene4445 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4385 Alide2_4386 Alide2_4386 Alide2_4386 4587071 4587223 - hypothetical protein KEGG: ctt:CtCNB1_4464 hypothetical protein gene gene4446 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4386 Alide2_4387 Alide2_4387 Alide2_4387 4587220 4588254 - Anthranilate phosphoribosyltransferase PFAM: Glycosyl transferase%2C family 3%3B Glycosyl transferase%2C family 3%2C N-terminal~TIGRFAM: Anthranilate phosphoribosyl transferase~HAMAP: Anthranilate phosphoribosyl transferase~KEGG: dia:Dtpsy_0359 anthranilate phosphoribosyltransferase gene gene4447 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4387 Alide2_4388 Alide2_4388 Alide2_4388 4588251 4588823 - glutamine amidotransferase of anthranilate synthase TIGRFAM: Anthranilate synthase%2C glutamine amidotransferase domain~KEGG: dia:Dtpsy_0358 anthranilate synthase component II~PFAM: Glutamine amidotransferase class-I%2C C-terminal gene gene4448 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4388 Alide2_4389 Alide2_4389 Alide2_4389 4589621 4590535 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: rpf:Rpic12D_2820 integrase catalytic region gene gene4449 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4389 Alide2_4390 Alide2_4390 Alide2_4390 4590532 4590855 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911family~KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein gene gene4450 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4390 Alide2_4391 Alide2_4391 Alide2_4391 4590986 4591186 + hypothetical protein gene gene4451 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4391 Alide2_4392 Alide2_4392 Alide2_4392 4591168 4591716 - RES domain protein KEGG: avn:Avin_32410 hypothetical protein~PFAM: RES~SMART: RES gene gene4452 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4392 Alide2_4393 Alide2_4393 Alide2_4393 4591713 4592084 - hypothetical protein KEGG: avn:Avin_32400 hypothetical protein gene gene4453 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4393 Alide2_4394 Alide2_4394 Alide2_4394 4592399 4592740 - Chorismate mutase%2C type II KEGG: dia:Dtpsy_0357 chorismate mutase~PFAM: Chorismate mutase%2C type II~SMART: Chorismate mutase gene gene4454 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4394 Alide2_4395 Alide2_4395 Alide2_4395 4592737 4594236 - anthranilate synthase component I TIGRFAM: Anthranilate synthase component I%2C PabB-like~KEGG: dia:Dtpsy_0356 anthranilate synthase component I~PFAM: Chorismate binding%2C C-terminal%3B Anthranilate synthase component I%2C N-terminal gene gene4455 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4395 Alide2_4396 Alide2_4396 Alide2_4396 4594579 4596339 + methyl-accepting chemotaxis sensory transducer KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene4456 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4396 Alide2_4397 Alide2_4397 Alide2_4397 4596502 4599267 + diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS fold%3B HAMP linker domain~KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS%3B HAMP linker domain%3B PAC motif gene gene4457 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4397 Alide2_4398 Alide2_4398 Alide2_4398 4599206 4599958 - phosphoglycolate phosphatase TIGRFAM: 2-phosphoglycolate phosphatase%2C prokaryotic%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~KEGG: dia:Dtpsy_0352 phosphoglycolate phosphatase~PFAM: Haloacid dehalogenase-like hydrolase gene gene4458 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4398 Alide2_4399 Alide2_4399 Alide2_4399 4600147 4600521 + hypothetical protein KEGG: ajs:Ajs_0362 hypothetical protein gene gene4459 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4399 Alide2_4400 Alide2_4400 Alide2_4400 4600538 4601218 - ribulose-phosphate 3-epimerase TIGRFAM: Ribulose-phosphate 3-epimerase~KEGG: dia:Dtpsy_0350 ribulose-phosphate 3-epimerase~PFAM: Ribulose-phosphate 3-epimerase gene gene4460 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4400 Alide2_4401 Alide2_4401 Alide2_4401 4601267 4601674 + Protein ApaG KEGG: dia:Dtpsy_0349 ApaG~HAMAP: Uncharacterised protein family ApaG~PFAM: ApaG domain gene gene4461 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4401 Alide2_4402 Alide2_4402 Alide2_4402 4601671 4603659 + site-specific recombinase Gcr PFAM: Site-specific recombinase Gcr~KEGG: ajs:Ajs_0359 putative site-specific recombinase transmembrane protein gene gene4462 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4402 Alide2_4403 Alide2_4403 Alide2_4403 4603829 4605094 + sodium/hydrogen exchanger PFAM: Cation/H+ exchanger~KEGG: dia:Dtpsy_0347 sodium/hydrogen exchanger gene gene4463 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4403 Alide2_4404 Alide2_4404 Alide2_4404 4605084 4606208 + Carboxylate-amine ligase ybdK TIGRFAM: Carboxylate-amine ligase%2C predicted~HAMAP: Carboxylate-amine ligase%2C predicted~KEGG: dia:Dtpsy_0346 carboxylate-amine ligase~PFAM: Glutamate--cysteine ligase%2C GCS2 gene gene4464 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4404 Alide2_4405 Alide2_4405 Alide2_4405 4606211 4607197 + thiamine-monophosphate kinase TIGRFAM: Thiamine-monophosphate kinase~KEGG: xtr:100495996 thiamine-monophosphate kinase-like~PFAM: AIR synthase-related protein%3B AIR synthase-related protein%2C C-terminal gene gene4465 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4405 Alide2_4406 Alide2_4406 Alide2_4406 4607182 4607634 - hypothetical protein KEGG: rfr:Rfer_2221 hypothetical protein gene gene4466 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4406 Alide2_4407 Alide2_4407 Alide2_4407 4607738 4608214 + putative type 4 fimbrial biogenesis transmembrane protein KEGG: har:HEAR3117 putative type 4 fimbrial biogenesis transmembrane protein gene gene4467 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4407 Alide2_4408 Alide2_4408 Alide2_4408 4608229 4608843 + Tfp pilus assembly protein FimT KEGG: lch:Lcho_2905 Tfp pilus assembly protein FimT gene gene4468 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4408 Alide2_4409 Alide2_4409 Alide2_4409 4608864 4609319 + type IV pilus modification protein PilV TIGRFAM: Pilus modification type IV%2C PilV%3B Prepilin-type cleavage/methylation%2C N-terminal~KEGG: lch:Lcho_2906 hypothetical protein gene gene4469 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4409 Alide2_4410 Alide2_4410 Alide2_4410 4609316 4610401 + type IV pilus assembly protein PilW KEGG: lch:Lcho_2907 type IV pilus assembly protein PilW gene gene4470 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4410 Alide2_4411 Alide2_4411 Alide2_4411 4610386 4611066 + type IV pilus assembly protein PilX KEGG: lch:Lcho_2908 type IV pilus assembly protein PilX gene gene4471 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4411 Alide2_4412 Alide2_4412 Alide2_4412 4611144 4614704 + Pyrrolo-quinoline quinone repeat-containing protein KEGG: mep:MPQ_2531 pyrrolo-quinoline quinone~PFAM: Pyrrolo-quinoline quinone repeat~SMART: Pyrrolo-quinoline quinone beta-propeller repeat gene gene4472 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4412 Alide2_4413 Alide2_4413 Alide2_4413 4614750 4615439 - regulatory protein TetR PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: axy:AXYL_05659 TetR family regulatory protein 27 gene gene4473 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4413 Alide2_4414 Alide2_4414 Alide2_4414 4615598 4617340 + Poly-beta-hydroxybutyrate polymerase domain protein PFAM: Poly-beta-hydroxybutyrate polymerase%2C N-terminal%3B Alpha/beta hydrolase fold-1~KEGG: eba:ebA5073 putative poly-beta-hydroxyalkanoate synthase gene gene4474 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4414 Alide2_4415 Alide2_4415 Alide2_4415 4617337 4618110 + Enoyl-(acyl-carrier-protein) reductase (NADH) KEGG: aav:Aave_2051 enoyl-(acyl carrier protein) reductase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene4475 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4415 Alide2_4416 Alide2_4416 Alide2_4416 4618115 4619569 + RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: har:HEAR2593 putative outer membrane transport protein involved in copper (silver) tolerance (CusC)~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene4476 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4416 Alide2_4417 Alide2_4417 Alide2_4417 4619566 4620636 + secretion protein HlyD family protein PFAM: Secretion protein HlyD~KEGG: axy:AXYL_05661 HlyD family secretion family protein 5 gene gene4477 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4417 Alide2_4418 Alide2_4418 Alide2_4418 4620633 4623371 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like%3B ABC-2 type transporter~KEGG: ajs:Ajs_2361 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene4478 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4418 Alide2_4419 Alide2_4419 Alide2_4419 4623376 4624512 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: bav:BAV1815 ABC transporter%2C permease protein gene gene4479 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4419 Alide2_4420 Alide2_4420 Alide2_4420 4624590 4626029 + Phosphate acetyltransferase KEGG: rpf:Rpic12D_4426 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase~PFAM: Phosphate acetyl/butaryl transferase%3B MaoC-like dehydratase gene gene4480 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4420 Alide2_4421 Alide2_4421 Alide2_4421 4626026 4627216 + acetate kinase TIGRFAM: Acetate kinase~KEGG: har:HEAR1515 acetate kinase (acetokinase)~PFAM: Acetate/butyrate kinase gene gene4481 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4421 Alide2_4422 Alide2_4422 Alide2_4422 4627294 4627821 + phosphatidylglycerophosphatase A PFAM: Phosphatidylglycerophosphatase A~KEGG: dia:Dtpsy_0344 phosphatidylglycerophosphatase A gene gene4482 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4422 Alide2_4423 Alide2_4423 Alide2_4423 4627828 4628346 + CinA domain protein KEGG: ajs:Ajs_0354 CinA domain-containing protein~TIGRFAM: CinA%2C C-terminal~PFAM: CinA%2C C-terminal gene gene4483 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4423 Alide2_4424 Alide2_4424 Alide2_4424 4628359 4629987 - methyl-accepting chemotaxis sensory transducer KEGG: lch:Lcho_3216 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene4484 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4424 Alide2_4425 Alide2_4425 Alide2_4425 4629990 4632230 - diguanylate cyclase/phosphodiesterase with extracellular sensor TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B HAMP linker domain~KEGG: slt:Slit_1460 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B HAMP linker domain gene gene4485 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4425 Alide2_4426 Alide2_4426 Alide2_4426 4632508 4633113 - response regulator receiver and ANTAR domain protein KEGG: nhl:Nhal_1312 response regulator receiver~PFAM: Signal transduction response regulator%2C receiver domain%3B ANTAR~SMART: Signal transduction response regulator%2C receiver domain gene gene4486 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4426 Alide2_4427 Alide2_4427 Alide2_4427 4633110 4634546 - signal transduction histidine kinase KEGG: lch:Lcho_2722 putative signal transduction histidine kinase~TIGRFAM: PAS~PFAM: Signal transduction histidine kinase%2C subgroup 2%2C dimerisation and phosphoacceptor domain%3B PAS fold-4%3B ATPase-like%2C ATP-binding domain gene gene4487 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4427 Alide2_4428 Alide2_4428 Alide2_4428 4634849 4635664 - SEC-C motif domain protein PFAM: SEC-C motif~KEGG: dia:Dtpsy_0342 sec-C motif domain protein gene gene4488 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4428 Alide2_4429 Alide2_4429 Alide2_4429 4635751 4636094 + pseudogene gene4489 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4429 Alide2_4430 Alide2_4430 Alide2_4430 4636097 4636582 - protein of unknown function DUF132 KEGG: dia:Dtpsy_0340 hypothetical protein~TIGRFAM: Protein of unknown function DUF132~SMART: Nucleotide binding protein%2C PINc gene gene4490 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4430 Alide2_4431 Alide2_4431 Alide2_4431 4636572 4637840 - rRNA (guanine-N(2)-)-methyltransferase PFAM: Putative RNA methylase%3B THUMP~KEGG: ajs:Ajs_0350 putative RNA methylase~SMART: THUMP gene gene4491 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4431 Alide2_4432 Alide2_4432 Alide2_4432 4637953 4639776 + methyl-accepting chemotaxis sensory transducer with Cache sensor KEGG: aav:Aave_0421 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B Cache%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene4492 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4432 Alide2_4433 Alide2_4433 Alide2_4433 4639778 4640221 - hypothetical protein KEGG: ajs:Ajs_0349 hypothetical protein gene gene4493 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4433 Alide2_4434 Alide2_4434 Alide2_4434 4640235 4641788 - RNA polymerase%2C sigma 54 subunit%2C RpoN KEGG: dia:Dtpsy_0337 RNA polymerase%2C sigma 54 subunit%2C RpoN~TIGRFAM: RNA polymerase sigma factor 54~PFAM: RNA polymerase sigma factor 54%2C DNA-binding%3B RNA polymerase sigma factor 54%2C core-binding%3B RNA polymerase sigma factor 54 gene gene4494 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4434 Alide2_4435 Alide2_4435 Alide2_4435 4641838 4642638 - Sulfate-transporting ATPase PFAM: ABC transporter-like~KEGG: aav:Aave_0418 ABC transporter-related protein~SMART: ATPase%2C AAA+ type%2C core gene gene4495 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4435 Alide2_4436 Alide2_4436 Alide2_4436 4642635 4643279 - lipopolysaccharide transport periplasmic protein LptA KEGG: dia:Dtpsy_0335 lipopolysaccharide transport periplasmic protein LptA~TIGRFAM: Lipopolysccharide assembly%2C LptA~PFAM: Organic solvent tolerance-like%2C N-terminal gene gene4496 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4436 Alide2_4437 Alide2_4437 Alide2_4437 4643399 4644055 - DSBA oxidoreductase PFAM: DSBA-like thioredoxin domain~KEGG: dia:Dtpsy_0334 DsbA oxidoreductase gene gene4497 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4437 Alide2_4438 Alide2_4438 Alide2_4438 4644135 4644770 - Sporulation domain-containing protein PFAM: Sporulation-related domain~KEGG: dia:Dtpsy_0333 sporulation domain protein gene gene4498 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4438 Alide2_4439 Alide2_4439 Alide2_4439 4644783 4646486 - arginyl-tRNA synthetase TIGRFAM: Arginyl-tRNA synthetase%2C class Ic~KEGG: ajs:Ajs_0343 arginyl-tRNA synthetase gene gene4499 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4439 Alide2_4440 Alide2_4440 Alide2_4440 4646611 4646937 + PsiF repeat-containing protein PFAM: Phosphate-starvation-induced PsiF repeat~KEGG: dia:Dtpsy_0331 PsiF repeat protein gene gene4500 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4440 Alide2_4441 Alide2_4441 Alide2_4441 4646995 4647450 - Protein of unknown function DUF2214%2C membrane PFAM: Protein of unknown function DUF2214%2C membrane~KEGG: ajs:Ajs_0341 putative transmembrane protein gene gene4501 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4441 Alide2_4442 Alide2_4442 Alide2_4442 4647544 4648881 - C4-dicarboxylate transport protein KEGG: dac:Daci_2923 sodium:dicarboxylate symporter~HAMAP: C4-dicarboxylate transport protein~PFAM: Sodium:dicarboxylate symporter gene gene4502 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4442 Alide2_4443 Alide2_4443 Alide2_4443 4649081 4651741 + PAS/PAC sensor hybrid histidine kinase KEGG: dac:Daci_2922 PAS/PAC sensor hybrid histidine kinase~PFAM: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B PAS fold-4%3B Signal transduction response regulator%2C receiver domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B Signal transduction response regulator%2C receiver domain gene gene4503 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4443 Alide2_4444 Alide2_4444 Alide2_4444 4651807 4652445 - two component transcriptional regulator%2C LuxR family KEGG: dac:Daci_2921 two component LuxR family transcriptional regulator~PFAM: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain~SMART: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain gene gene4504 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4444 Alide2_4445 Alide2_4445 Alide2_4445 4652459 4653391 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_0328 transcriptional regulator%2C LysR family gene gene4505 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4445 Alide2_4446 Alide2_4446 Alide2_4446 4653626 4655824 + malate synthase G TIGRFAM: Malate synthase G~KEGG: dia:Dtpsy_0327 malate synthase G~PFAM: Malate synthase gene gene4506 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4446 Alide2_4447 Alide2_4447 Alide2_4447 4655901 4656185 + hypothetical protein manually curated~KEGG: ajs:Ajs_0337 hypothetical protein gene gene4507 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4447 Alide2_4448 Alide2_4448 Alide2_4448 4656161 4656349 + 4-oxalocrotonate tautomerase family enzyme KEGG: dia:Dtpsy_0325 4-oxalocrotonate tautomerase~TIGRFAM: 4-oxalocrotonate tautomerase%2C bacteria/archaea~PFAM: 4-oxalocrotonate tautomerase gene gene4508 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4448 Alide2_4449 Alide2_4449 Alide2_4449 4656372 4657160 + protein of unknown function DUF169 PFAM: Protein of unknown function DUF169~KEGG: bbt:BBta_4610 hypothetical protein gene gene4509 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4449 Alide2_4450 Alide2_4450 Alide2_4450 4657185 4657952 + glutamine amidotransferase class-II PFAM: Glutamine amidotransferase%2C class-II~KEGG: ajs:Ajs_0335 glutamine amidotransferase%2C class-II gene gene4510 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4450 Alide2_4451 Alide2_4451 Alide2_4451 4663791 4664810 - glutathione synthetase TIGRFAM: Glutathione synthetase%2C prokaryotic~KEGG: dia:Dtpsy_3256 glutathione synthetase~PFAM: Prokaryotic glutathione synthetase%2C ATP-binding%3B Prokaryotic glutathione synthetase%2C N-terminal gene gene4516 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4451 Alide2_4452 Alide2_4452 Alide2_4452 4664770 4666011 - benzoate transporter KEGG: dia:Dtpsy_3257 benzoate transporter~TIGRFAM: Benzoate membrane transport protein~PFAM: Benzoate membrane transport protein gene gene4517 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4452 Alide2_4453 Alide2_4453 Alide2_4453 4666103 4667974 - Low affinity potassium transport system protein kup KEGG: aav:Aave_4541 K+ potassium transporter~HAMAP: Potassium uptake protein%2C low affinity%2C Kup~PFAM: K+ potassium transporter gene gene4518 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4453 Alide2_4454 Alide2_4454 Alide2_4454 4668070 4669413 - glutamate/cysteine ligase KEGG: dia:Dtpsy_3259 glutamate/cysteine ligase~TIGRFAM: Glutamate--cysteine ligase GshA~PFAM: Glutamate--cysteine ligase GshA gene gene4519 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4454 Alide2_4455 Alide2_4455 Alide2_4455 4669433 4670899 - cation transporter PFAM: Cation transporter~KEGG: dac:Daci_5998 cation transporter gene gene4520 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4455 Alide2_4456 Alide2_4456 Alide2_4456 4670901 4672376 - TrkA-N domain protein PFAM: Regulator of K+ conductance%2C N-terminal%3B Regulator of K+ conductance%2C C-terminal~KEGG: dia:Dtpsy_3261 potassium transporter peripheral membrane component gene gene4521 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4456 Alide2_4457 Alide2_4457 Alide2_4457 4672437 4673771 - Gamma-glutamyl phosphate reductase PFAM: Aldehyde dehydrogenase domain~TIGRFAM: Gamma-glutamyl phosphate reductase GPR~HAMAP: Glutamate-5-semialdehyde dehydrogenase~KEGG: ajs:Ajs_3913 gamma-glutamyl phosphate reductase gene gene4522 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4457 Alide2_4458 Alide2_4458 Alide2_4458 4673789 4674124 - hypothetical protein gene gene4523 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4458 Alide2_4459 Alide2_4459 Alide2_4459 4674066 4675127 - RimK domain protein ATP-grasp KEGG: ank:AnaeK_1753 RimK domain protein ATP-grasp gene gene4524 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4459 Alide2_4460 Alide2_4460 Alide2_4460 4675124 4676431 - Astacin PFAM: Peptidase M12A%2C astacin~KEGG: cph:Cpha266_0056 peptidase M12A%2C astacin~SMART: Peptidase%2C metallopeptidase gene gene4525 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4460 Alide2_4461 Alide2_4461 Alide2_4461 4676744 4677028 + hypothetical protein KEGG: dia:Dtpsy_3263 hypothetical protein gene gene4526 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4461 Alide2_4462 Alide2_4462 Alide2_4462 4677230 4678309 - DNA polymerase III%2C delta subunit KEGG: dia:Dtpsy_3264 DNA polymerase III subunit delta~TIGRFAM: DNA polymerase III%2C delta subunit~PFAM: DNA polymerase III%2C delta gene gene4527 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4462 Alide2_4463 Alide2_4463 Alide2_4463 4678330 4678842 - Rare lipoprotein B PFAM: Lipopolysccharide assembly%2C LptE~KEGG: dia:Dtpsy_3265 rare lipoprotein B gene gene4528 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4463 Alide2_4464 Alide2_4464 Alide2_4464 4678842 4681547 - leucyl-tRNA synthetase TIGRFAM: Leucyl-tRNA synthetase%2C class Ia%2C bacterial/mitochondrial~KEGG: ajs:Ajs_3917 leucyl-tRNA synthetase gene gene4529 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4464 Alide2_4465 Alide2_4465 Alide2_4465 4681704 4682948 + MscS Mechanosensitive ion channel PFAM: Mechanosensitive ion channel MscS~KEGG: ajs:Ajs_3919 MscS mechanosensitive ion channel gene gene4530 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4465 Alide2_4466 Alide2_4466 Alide2_4466 4683253 4684779 + Aldehyde Dehydrogenase PFAM: Aldehyde dehydrogenase domain~KEGG: bmj:BMULJ_03133 NAD-dependent aldehyde dehydrogenase gene gene4531 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4466 Alide2_4467 Alide2_4467 Alide2_4467 4684862 4685672 + pseudogene gene4532 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4467 Alide2_4468 Alide2_4468 Alide2_4468 4685693 4687666 - GAF modulated sigma54 specific transcriptional regulator%2C Fis family KEGG: pna:Pnap_0735 fis family GAF modulated sigma54 specific transcriptional regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B GAF%3B Helix-turn-helix%2C Fis-type~SMART: ATPase%2C AAA+ type%2C core gene gene4533 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4468 Alide2_4469 Alide2_4469 Alide2_4469 4688034 4688516 + cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: pna:Pnap_0736 cytochrome c-type protein gene gene4534 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4469 Alide2_4470 Alide2_4470 Alide2_4470 4688931 4691507 + diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate cyclase%2C predicted%3B PAS fold%3B GAF%3B Diguanylate phosphodiesterase%2C EAL domain~KEGG: bxe:Bxe_C0015 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)~SMART: Diguanylate phosphodiesterase%2C EAL domain%3B Diguanylate cyclase%2C predicted%3B PAS%3B PAC motif%3B GAF gene gene4535 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4470 Alide2_4471 Alide2_4471 Alide2_4471 4691514 4691933 - Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR~KEGG: ajs:Ajs_3920 biopolymer transport protein ExbD/TolR gene gene4536 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4471 Alide2_4472 Alide2_4472 Alide2_4472 4691940 4692593 - MotA/TolQ/ExbB proton channel PFAM: MotA/TolQ/ExbB proton channel~KEGG: dia:Dtpsy_3269 MotA/TolQ/ExbB proton channel gene gene4537 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4472 Alide2_4473 Alide2_4473 Alide2_4473 4692601 4693422 - dihydrodipicolinate reductase TIGRFAM: Dihydrodipicolinate reductase%2C bacterial/plant~KEGG: ajs:Ajs_3922 dihydrodipicolinate reductase~PFAM: Dihydrodipicolinate reductase%2C C-terminal%3B Dihydrodipicolinate reductase%2C N-terminal gene gene4538 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4473 Alide2_4474 Alide2_4474 Alide2_4474 4693477 4694019 - SmpA/OmlA domain-containing protein PFAM: Lipoprotein SmpA/OmlA~KEGG: dia:Dtpsy_3271 SmpA/OmlA domain protein gene gene4539 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4474 Alide2_4475 Alide2_4475 Alide2_4475 4694131 4694550 + ferric uptake regulator%2C Fur family PFAM: Ferric-uptake regulator~KEGG: dia:Dtpsy_3272 ferric uptake regulator%2C Fur family gene gene4540 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4475 Alide2_4476 Alide2_4476 Alide2_4476 4694558 4695511 - HPr kinase PFAM: Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase%2C C-terminal%3B Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase%2C N-terminal~KEGG: dia:Dtpsy_3273 HPr kinase/phosphorylase gene gene4541 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4476 Alide2_4477 Alide2_4477 Alide2_4477 4695805 4696272 - putative PTS IIA-like nitrogen-regulatory protein PtsN PFAM: Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~KEGG: ajs:Ajs_3926 PTS IIA-like nitrogen-regulatory protein PtsN gene gene4542 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4477 Alide2_4478 Alide2_4478 Alide2_4478 4696413 4696760 - sigma 54 modulation protein/ribosomal protein S30EA KEGG: dia:Dtpsy_3275 sigma 54 modulation protein/ribosomal protein S30EA~TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein~PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein gene gene4543 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4478 Alide2_4479 Alide2_4479 Alide2_4479 4697073 4697993 + phosphoribosylaminoimidazole-succinocarboxamide synthase TIGRFAM: SAICAR synthetase~KEGG: dia:Dtpsy_3276 phosphoribosylaminoimidazole-succinocarboxamide synthase~PFAM: SAICAR synthetase gene gene4544 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4479 Alide2_4480 Alide2_4480 Alide2_4480 4698043 4698951 - thioredoxin KEGG: dia:Dtpsy_3279 thioredoxin~TIGRFAM: Thioredoxin~PFAM: Thioredoxin domain gene gene4545 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4480 Alide2_4481 Alide2_4481 Alide2_4481 4699093 4699590 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit TIGRFAM: Phosphoribosylaminoimidazole carboxylase%2C core~KEGG: dia:Dtpsy_3282 phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~PFAM: Phosphoribosylaminoimidazole carboxylase%2C core gene gene4546 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4481 Alide2_4482 Alide2_4482 Alide2_4482 4699587 4700756 + phosphoribosylaminoimidazole carboxylase%2C ATPase subunit TIGRFAM: Phosphoribosylaminoimidazole carboxylase%2C ATPase subunit~KEGG: dia:Dtpsy_3283 phosphoribosylaminoimidazole carboxylase ATPase subunit~PFAM: ATP-grasp fold%2C ATP-dependent carboxylate-amine ligase-type gene gene4547 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4482 Alide2_4483 Alide2_4483 Alide2_4483 4700762 4701760 + Sua5/YciO/YrdC/YwlC family protein KEGG: ajs:Ajs_3936 translation factor SUA5~TIGRFAM: Sua5/YciO/YrdC/YwlC~PFAM: Sua5/YciO/YrdC%2C N-terminal%3B SUA5 gene gene4548 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4483 Alide2_4484 Alide2_4484 Alide2_4484 4701824 4702780 + lipolytic protein G-D-S-L family PFAM: Lipase%2C GDSL~KEGG: ajs:Ajs_3937 lipase gene gene4549 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4484 Alide2_4485 Alide2_4485 Alide2_4485 4702849 4703544 - OmpW family protein PFAM: Outer membrane protein%2C OmpW~KEGG: pna:Pnap_1827 OmpW family protein gene gene4550 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4485 Alide2_4486 Alide2_4486 Alide2_4486 4703573 4705132 - hypothetical protein KEGG: pna:Pnap_1828 hypothetical protein gene gene4551 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4486 Alide2_4487 Alide2_4487 Alide2_4487 4705235 4706707 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase TIGRFAM: Peptidase S13%2C D-Ala-D-Ala carboxypeptidase C~KEGG: dia:Dtpsy_3288 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase~PFAM: Peptidase S13%2C D-Ala-D-Ala carboxypeptidase C gene gene4552 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4487 Alide2_4488 Alide2_4488 Alide2_4488 4706783 4707511 + universal protein YeaZ KEGG: ajs:Ajs_3940 peptidase M22%2C glycoprotease~TIGRFAM: Conserved hypothetical protein CHP03725%2C YeaZ~PFAM: Peptidase M22%2C glycoprotease gene gene4553 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4488 Alide2_4489 Alide2_4489 Alide2_4489 4707508 4707984 + ribosomal-protein-alanine acetyltransferase KEGG: dia:Dtpsy_3290 ribosomal-protein-alanine acetyltransferase~TIGRFAM: Ribosomal-protein-alanine acetyltransferase~PFAM: GCN5-related N-acetyltransferase (GNAT) domain gene gene4554 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4489 Alide2_4490 Alide2_4490 Alide2_4490 4707981 4708718 + phage SPO1 DNA polymerase-related protein KEGG: dia:Dtpsy_3291 phage SPO1 DNA polymerase-related protein gene gene4555 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4490 Alide2_4491 Alide2_4491 Alide2_4491 4708889 4709875 + magnesium and cobalt transport protein CorA KEGG: dac:Daci_0973 magnesium and cobalt transport protein CorA~TIGRFAM: Magnesium/cobalt transport protein CorA~PFAM: Mg2+ transporter protein%2C CorA-like gene gene4556 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4491 Alide2_4492 Alide2_4492 Alide2_4492 4710170 4710379 + hypothetical protein gene gene4557 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4492 Alide2_4493 Alide2_4493 Alide2_4493 4710679 4710861 + hypothetical protein gene gene4558 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4493 Alide2_4494 Alide2_4494 Alide2_4494 4710930 4711697 - MTA/SAH nucleosidase TIGRFAM: MTA/SAH nucleosidase~KEGG: dia:Dtpsy_3298 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase~PFAM: Nucleoside phosphorylase domain gene gene4559 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4494 Alide2_4495 Alide2_4495 Alide2_4495 4711757 4713433 - Long-chain-fatty-acid--CoA ligase KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene4560 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4495 Alide2_4496 Alide2_4496 Alide2_4496 4713524 4714936 - NAD(P)(+) transhydrogenase (AB-specific) KEGG: ctt:CtCNB1_0258 NAD(P) transhydrogenase%2C beta subunit~PFAM: NAD(P) transhydrogenase%2C beta subunit gene gene4561 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4496 Alide2_4497 Alide2_4497 Alide2_4497 4714973 4716583 - NAD(P) transhydrogenase%2C alpha subunit KEGG: bpt:Bpet4170 NAD(P) transhydrogenase subunit alpha~TIGRFAM: NAD(P) transhydrogenase%2C alpha subunit~PFAM: Alanine dehydrogenase/PNT%2C C-terminal%3B Alanine dehydrogenase/PNT%2C N-terminal gene gene4562 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4497 Alide2_4498 Alide2_4498 Alide2_4498 4716638 4717357 - hypothetical protein KEGG: dia:Dtpsy_3302 hypothetical protein gene gene4563 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4498 Alide2_4499 Alide2_4499 Alide2_4499 4717481 4718545 - fructose-bisphosphate aldolase%2C class II%2C Calvin cycle subtype TIGRFAM: Fructose-bisphosphate aldolase%2C class II%2C Calvin cycle subtype%3B Ketose-bisphosphate aldolase%2C class-II~KEGG: dia:Dtpsy_3304 fructose-bisphosphate aldolase%2C class II%2C Calvin cycle subtype~PFAM: Ketose-bisphosphate aldolase%2C class-II gene gene4564 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4499 Alide2_4500 Alide2_4500 Alide2_4500 4718683 4720125 - pyruvate kinase TIGRFAM: Pyruvate kinase~KEGG: dia:Dtpsy_3305 pyruvate kinase~PFAM: Pyruvate kinase%2C barrel%3B Pyruvate kinase%2C C-terminal-like gene gene4565 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4500 Alide2_4501 Alide2_4501 Alide2_4501 4720201 4721583 - Xaa-Pro aminopeptidase KEGG: dia:Dtpsy_3306 peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein~PFAM: Peptidase M24%2C structural domain%3B Peptidase M24B%2C X-Pro dipeptidase/aminopeptidase P N-terminal gene gene4566 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4501 Alide2_4502 Alide2_4502 Alide2_4502 4721805 4722584 - Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: dac:Daci_0802 enoyl-CoA hydratase gene gene4567 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4502 Alide2_4503 Alide2_4503 Alide2_4503 4722584 4723555 - hypothetical protein KEGG: dac:Daci_0801 hypothetical protein gene gene4568 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4503 Alide2_4504 Alide2_4504 Alide2_4504 4723556 4724734 - Formyl-CoA transferase KEGG: xtr:100495402 caiB/baiF CoA-transferase family protein DDB_G0269880-like~PFAM: CoA-transferase family III gene gene4569 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4504 Alide2_4505 Alide2_4505 Alide2_4505 4724745 4725908 - Thiolase domain-containing protein PFAM: Thiolase%2C C-terminal~KEGG: rme:Rmet_5111 thiolase gene gene4570 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4505 Alide2_4506 Alide2_4506 Alide2_4506 4725905 4726306 - protein of unknown function DUF35 PFAM: Domain of unknown function DUF35%2C OB-fold%2C C-terminal%3B Domain of unknown function DUF35%2C rubredoxin-like zinc ribbon domain%2C N-terminal~KEGG: axy:AXYL_04666 hypothetical protein gene gene4571 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4506 Alide2_4507 Alide2_4507 Alide2_4507 4726311 4727318 - extra-cytoplasmic solute receptor family protein 120 KEGG: axy:AXYL_04659 extra-cytoplasmic solute receptor family protein 120 gene gene4572 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4507 Alide2_4508 Alide2_4508 Alide2_4508 4727478 4728386 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: xtr:100494792 uncharacterized HTH-type transcriptional regulator ywbI-like gene gene4573 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4508 Alide2_4509 Alide2_4509 Alide2_4509 4728392 4729168 - Nucleotidyl transferase PFAM: Nucleotidyl transferase~KEGG: ajs:Ajs_3958 nucleotidyl transferase gene gene4574 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4509 Alide2_4510 Alide2_4510 Alide2_4510 4729243 4731279 + transketolase SMART: Transketolase-like%2C pyrimidine-binding domain~TIGRFAM: Transketolase%2C bacterial-like~KEGG: dia:Dtpsy_3309 transketolase~PFAM: Transketolase%2C N-terminal%3B Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal gene gene4575 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4510 Alide2_4511 Alide2_4511 Alide2_4511 4731310 4732311 + glyceraldehyde-3-phosphate dehydrogenase%2C type I SMART: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain~TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase%2C type I~KEGG: ajs:Ajs_3960 glyceraldehyde-3-phosphate dehydrogenase~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain gene gene4576 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4511 Alide2_4512 Alide2_4512 Alide2_4512 4732473 4732817 - sigma 54 modulation protein/ribosomal protein S30EA PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein~KEGG: dia:Dtpsy_3312 ribosomal subunit interface protein%2C putative gene gene4577 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4512 Alide2_4513 Alide2_4513 Alide2_4513 4732991 4733872 + peptidase C26 PFAM: Peptidase C26~KEGG: dia:Dtpsy_3313 peptidase C26 gene gene4578 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4513 Alide2_4514 Alide2_4514 Alide2_4514 4733873 4734757 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: pol:Bpro_2148 LysR family transcriptional regulator gene gene4579 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4514 Alide2_4515 Alide2_4515 Alide2_4515 4734878 4735768 + amidohydrolase 2 PFAM: Amidohydrolase 2~KEGG: pol:Bpro_2147 amidohydrolase 2 gene gene4580 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4515 Alide2_4516 Alide2_4516 Alide2_4516 4735811 4736641 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: pol:Bpro_2146 short-chain dehydrogenase/reductase SDR~PFAM: Short-chain dehydrogenase/reductase SDR gene gene4581 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4516 Alide2_4517 Alide2_4517 Alide2_4517 4736698 4737669 + hypothetical protein KEGG: pol:Bpro_2145 hypothetical protein gene gene4582 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4517 Alide2_4518 Alide2_4518 Alide2_4518 4737693 4738214 + Carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase~KEGG: pol:Bpro_2144 carboxymuconolactone decarboxylase gene gene4583 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4518 Alide2_4519 Alide2_4519 Alide2_4519 4738211 4738924 + hypothetical protein KEGG: pol:Bpro_2143 hypothetical protein gene gene4584 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4519 Alide2_4520 Alide2_4520 Alide2_4520 4738949 4740163 - PepSY-associated TM helix domain-containing protein KEGG: dac:Daci_2267 PepSY-associated TM helix domain-containing protein gene gene4585 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4520 Alide2_4521 Alide2_4521 Alide2_4521 4740163 4742370 - TonB-dependent siderophore receptor KEGG: ctt:CtCNB1_3496 TonB-dependent siderophore receptor~TIGRFAM: TonB-dependent siderophore receptor~PFAM: TonB-dependent receptor%2C plug%3B TonB-dependent receptor%2C beta-barrel gene gene4586 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4521 Alide2_4522 Alide2_4522 Alide2_4522 4742511 4742984 - peptidylprolyl isomerase%2C FKBP-type KEGG: dia:Dtpsy_3314 peptidylprolyl isomerase%2C FKBP-type gene gene4587 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4522 Alide2_4523 Alide2_4523 Alide2_4523 4743039 4744010 - hypothetical protein KEGG: ctt:CtCNB1_4653 TctC gene gene4588 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4523 Alide2_4524 Alide2_4524 Alide2_4524 4744042 4744395 - hypothetical protein KEGG: ctt:CtCNB1_4654 hypothetical protein gene gene4589 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4524 Alide2_4525 Alide2_4525 Alide2_4525 4744414 4745775 - protein of unknown function DUF1446 PFAM: Protein of unknown function DUF1446~KEGG: ctt:CtCNB1_4655 NAD-dependent aldehyde dehydrogenase gene gene4590 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4525 Alide2_4526 Alide2_4526 Alide2_4526 4745884 4746774 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: ctt:CtCNB1_4656 transcriptional regulator%2C LysR family gene gene4591 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4526 Alide2_4527 Alide2_4527 Alide2_4527 4746874 4747350 - transcriptional activator ligand binding domain protein KEGG: aav:Aave_4607 transcription activator%2C effector binding~PFAM: Bacterial transcription activator%2C effector binding~SMART: Bacterial transcription activator%2C effector binding gene gene4592 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4527 Alide2_4528 Alide2_4528 Alide2_4528 4747652 4748707 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: dia:Dtpsy_3318 short-chain dehydrogenase/reductase SDR gene gene4593 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4528 Alide2_4529 Alide2_4529 Alide2_4529 4748804 4749427 - hypothetical protein KEGG: dia:Dtpsy_3319 hypothetical protein gene gene4594 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4529 Alide2_4530 Alide2_4530 Alide2_4530 4749455 4750201 - DTW domain containing protein PFAM: DTW~KEGG: ajs:Ajs_3970 DTW domain-containing protein gene gene4595 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4530 Alide2_4531 Alide2_4531 Alide2_4531 4750379 4751221 + transcriptional regulator%2C IclR family KEGG: ajs:Ajs_3971 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene4596 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4531 Alide2_4532 Alide2_4532 Alide2_4532 4751218 4752369 + thiolase KEGG: ajs:Ajs_3972 thiolase gene gene4597 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4532 Alide2_4533 Alide2_4533 Alide2_4533 4752372 4752731 + protein of unknown function DUF35 PFAM: Domain of unknown function DUF35%2C OB-fold%2C C-terminal~KEGG: ajs:Ajs_3973 hypothetical protein gene gene4598 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4533 Alide2_4534 Alide2_4534 Alide2_4534 4752754 4753731 + hypothetical protein KEGG: dia:Dtpsy_3324 hypothetical protein gene gene4599 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4534 Alide2_4535 Alide2_4535 Alide2_4535 4753740 4755827 + CoA-binding domain protein KEGG: dia:Dtpsy_3325 CoA-binding domain protein~PFAM: CoA-binding%3B ATP-grasp fold%2C succinyl-CoA synthetase-type~SMART: CoA-binding gene gene4600 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4535 Alide2_4536 Alide2_4536 Alide2_4536 4755876 4756574 - Glutathione S-transferase domain protein PFAM: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal~KEGG: ajs:Ajs_3976 glutathione S-transferase domain-containing protein gene gene4601 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4536 Alide2_4537 Alide2_4537 Alide2_4537 4756577 4757338 - 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: ajs:Ajs_3977 3-ketoacyl-(acyl-carrier-protein) reductase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene4602 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4537 Alide2_4538 Alide2_4538 Alide2_4538 4757366 4757767 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: ajs:Ajs_3978 glyoxalase/bleomycin resistance protein/dioxygenase gene gene4603 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4538 Alide2_4539 Alide2_4539 Alide2_4539 4757812 4760733 - DNA topoisomerase III SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B SWIB domain%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain~TIGRFAM: DNA topoisomerase III%2C bacterial-type~KEGG: ajs:Ajs_3990 DNA topoisomerase III~PFAM: DNA topoisomerase%2C type IA%2C central%3B SWIB/MDM2 domain%3B Toprim domain gene gene4604 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4539 Alide2_4540 Alide2_4540 Alide2_4540 4760834 4761385 + nuclear protein SET KEGG: dia:Dtpsy_3340 nuclear protein SET~PFAM: SET domain~SMART: SET domain%3B Post-SET domain gene gene4605 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4540 Alide2_4541 Alide2_4541 Alide2_4541 4761382 4762212 + biotin/acetyl-CoA-carboxylase ligase KEGG: dia:Dtpsy_3341 biotin/acetyl-CoA-carboxylase ligase~TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase~PFAM: Biotin/lipoate A/B protein ligase%3B Biotin protein ligase%2C C-terminal gene gene4606 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4541 Alide2_4542 Alide2_4542 Alide2_4542 4762369 4763040 + Sporulation domain-containing protein PFAM: Sporulation-related domain~KEGG: dia:Dtpsy_3342 sporulation domain protein gene gene4607 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4542 Alide2_4543 Alide2_4543 Alide2_4543 4763048 4764085 - NADPH:quinone reductase KEGG: pna:Pnap_2134 alcohol dehydrogenase~PFAM: Alcohol dehydrogenase%2C C-terminal%3B Alcohol dehydrogenase GroES-like gene gene4608 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4543 Alide2_4544 Alide2_4544 Alide2_4544 4764082 4764537 - MaoC domain protein dehydratase PFAM: MaoC-like dehydratase~KEGG: axy:AXYL_04788 MaoC-like domain-containing protein 10 gene gene4609 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4544 Alide2_4545 Alide2_4545 Alide2_4545 4764524 4764994 - acyl dehydratase 3 KEGG: axy:AXYL_04789 acyl dehydratase 3 gene gene4610 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4545 Alide2_4546 Alide2_4546 Alide2_4546 4765005 4766201 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: xtr:100489190 leu/Ile/Val-binding protein homolog 6-like gene gene4611 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4546 Alide2_4547 Alide2_4547 Alide2_4547 4766261 4768243 - Acetate--CoA ligase KEGG: bur:Bcep18194_C7155 AMP-dependent synthetase and ligase~PFAM: AMP-dependent synthetase/ligase gene gene4612 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4547 Alide2_4548 Alide2_4548 Alide2_4548 4768375 4768881 + transcriptional regulator%2C MarR family KEGG: vei:Veis_4103 MarR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR gene gene4613 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4548 Alide2_4549 Alide2_4549 Alide2_4549 4768963 4769334 + hypothetical protein KEGG: afw:Anae109_4130 hypothetical protein gene gene4614 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4549 Alide2_4550 Alide2_4550 Alide2_4550 4769602 4770300 + RES domain protein KEGG: azo:azo2874 hypothetical protein~PFAM: RES~SMART: RES gene gene4615 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4550 Alide2_4551 Alide2_4551 Alide2_4551 4770311 4771384 - NAD/NADP octopine/nopaline dehydrogenase PFAM: Opine dehydrogenase%3B Ketopantoate reductase ApbA/PanE%2C N-terminal~KEGG: vap:Vapar_0420 NAD/NADP octopine/nopaline dehydrogenase gene gene4616 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4551 Alide2_4552 Alide2_4552 Alide2_4552 4771381 4772409 - hypothetical protein KEGG: vap:Vapar_0421 hypothetical protein gene gene4617 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4552 Alide2_4553 Alide2_4553 Alide2_4553 4772441 4773886 - integral membrane sensor signal transduction histidine kinase KEGG: dia:Dtpsy_3348 histidine kinase~PFAM: Two-component sensor kinase N-terminal%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain%3B ATPase-like%2C ATP-binding domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene4618 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4553 Alide2_4554 Alide2_4554 Alide2_4554 4773952 4774626 - two component transcriptional regulator%2C winged helix family KEGG: ajs:Ajs_3999 two component transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene4619 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4554 Alide2_4555 Alide2_4555 Alide2_4555 4774754 4775884 - 2-aminoethylphosphonate--pyruvate transaminase PFAM: Aminotransferase%2C class V/Cysteine desulfurase~TIGRFAM: 2-aminoethylphosphonate--pyruvate transaminase%3B 2-aminoethylphosphonate aminotransferase~HAMAP: 2-aminoethylphosphonate--pyruvate transaminase~KEGG: bcj:BCAL0446 2-aminoethylphosphonate--pyruvate transaminase gene gene4620 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4555 Alide2_4556 Alide2_4556 Alide2_4556 4775919 4777640 - 2-aminoethylphosphonate ABC transport system%2C permease protein KEGG: reu:Reut_B5872 binding-protein dependent transport system inner membrane protein~TIGRFAM: 2-aminoethylphosphonate ABC transport system%2C permease protein%2C putative~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene4621 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4556 Alide2_4557 Alide2_4557 Alide2_4557 4777637 4778770 - 2-aminoethylphosphonate ABC transport system%2C ATP-binding protein component SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: 2-aminoethylphosphonate ABC transport system%2C ATP-binding component PhnT2~KEGG: reu:Reut_B5873 ABC transporter related~PFAM: ABC transporter-like gene gene4622 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4557 Alide2_4558 Alide2_4558 Alide2_4558 4778848 4779885 - 2-aminoethylphosphonate ABC transport system%2C 1-aminoethylphosphonate-binding protein component KEGG: reu:Reut_B5874 extracellular solute-binding protein~TIGRFAM: 2-aminoethylphosphonate ABC transport system%2C 1-aminoethylphosphonate-binding protein component~PFAM: Bacterial extracellular solute-binding%2C family 1 gene gene4623 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4558 Alide2_4559 Alide2_4559 Alide2_4559 4780028 4780756 + transcriptional regulator%2C GntR family TIGRFAM: Transcription regulator%2C 2-aminoethylphosphonate utilisation-associated~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~KEGG: reu:Reut_B5875 GntR family transcriptional regulator~SMART: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR gene gene4624 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4559 Alide2_4560 Alide2_4560 Alide2_4560 4780758 4781993 + phosphonoacetate hydrolase KEGG: reu:Reut_B5876 type I phosphodiesterase/nucleotide pyrophosphatase~TIGRFAM: Phosphonoacetate hydrolase~PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase gene gene4625 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4560 Alide2_4561 Alide2_4561 Alide2_4561 4782028 4783476 + phosphonoacetaldehyde dehydrogenase TIGRFAM: Putative phosphonoacetaldehyde dehydrogenase~KEGG: cti:RALTA_B0682 NAD+ dependent acetaldehyde dehydrogenase~PFAM: Aldehyde dehydrogenase domain gene gene4626 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4561 Alide2_4562 Alide2_4562 Alide2_4562 4783482 4784021 + phosphonate degradation operons associated HDIG domain protein TIGRFAM: Phosphonate degradation operon associated HDIG domain protein~KEGG: vei:Veis_1186 HD phosphohydrolase-like protein gene gene4627 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4562 Alide2_4563 Alide2_4563 Alide2_4563 4784121 4785509 + aminophosphonate oxidoreductase KEGG: bcm:Bcenmc03_3163 aminophosphonate oxidoreductase~TIGRFAM: Putative aminophosphonate oxidoreductase~PFAM: FAD dependent oxidoreductase gene gene4628 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4563 Alide2_4564 Alide2_4564 Alide2_4564 4785648 4786724 - alanine racemase TIGRFAM: Alanine racemase~KEGG: tmz:Tmz1t_3995 alanine racemase~PFAM: Alanine racemase%2C N-terminal%3B Alanine racemase%2C C-terminal gene gene4629 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4564 Alide2_4565 Alide2_4565 Alide2_4565 4786721 4788031 - D-amino acid dehydrogenase small subunit HAMAP: D-amino acid dehydrogenase small subunit%2C DadA~KEGG: dac:Daci_3117 D-amino acid dehydrogenase small subunit~PFAM: FAD dependent oxidoreductase gene gene4630 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4565 Alide2_4566 Alide2_4566 Alide2_4566 4788158 4788670 + transcriptional regulator%2C AsnC family KEGG: vap:Vapar_3966 transcriptional regulator%2C AsnC family~PFAM: Transcription regulator AsnC-type%2C C-terminal~SMART: Transcription regulator AsnC-type gene gene4631 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4566 Alide2_4567 Alide2_4567 Alide2_4567 4788655 4789134 - regulatory protein MarR PFAM: HTH transcriptional regulator%2C MarR~KEGG: ajs:Ajs_4000 MarR family transcriptional regulator gene gene4632 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4567 Alide2_4568 Alide2_4568 Alide2_4568 4789281 4790390 + recA protein TIGRFAM: DNA recombination and repair protein RecA~PFAM: DNA recombination and repair protein RecA~KEGG: dia:Dtpsy_3351 RecA protein~SMART: ATPase%2C AAA+ type%2C core gene gene4633 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4568 Alide2_4569 Alide2_4569 Alide2_4569 4790471 4790929 + regulatory protein RecX PFAM: Regulatory protein RecX~KEGG: dia:Dtpsy_3352 regulatory protein RecX gene gene4634 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4569 Alide2_4570 Alide2_4570 Alide2_4570 4790985 4793279 - protein of unknown function DUF1631 PFAM: Protein of unknown function DUF1631~KEGG: dia:Dtpsy_3353 hypothetical protein gene gene4635 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4570 Alide2_4571 Alide2_4571 Alide2_4571 4793336 4794289 - protein-export membrane protein SecF KEGG: dia:Dtpsy_3354 preprotein translocase subunit SecF~TIGRFAM: SecF protein%3B SecD/SecF/SecDF export membrane protein%2C bacteria~PFAM: Preprotein translocase%2C SecD/SecF/SecDF%3B SecD/SecF/SecDF export membrane protein%2C GG motif%2C N-terminal gene gene4636 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4571 Alide2_4572 Alide2_4572 Alide2_4572 4794301 4796196 - protein-export membrane protein SecD KEGG: dia:Dtpsy_3355 preprotein translocase subunit SecD~TIGRFAM: SecD export membrane protein%3B SecD/SecF/SecDF export membrane protein%2C bacteria~PFAM: Preprotein translocase%2C SecD/SecF/SecDF%3B SecD/SecF/SecDF export membrane protein%2C GG motif%2C N-terminal gene gene4637 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4572 Alide2_4573 Alide2_4573 Alide2_4573 4796279 4796611 - preprotein translocase%2C YajC subunit KEGG: dia:Dtpsy_3356 preprotein translocase%2C YajC subunit~TIGRFAM: Preprotein translocase YajC~PFAM: Preprotein translocase YajC gene gene4638 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4573 Alide2_4574 Alide2_4574 Alide2_4574 4796815 4800432 - Pyruvate/ketoisovalerate oxidoreductase PFAM: Pyruvate/ketoisovalerate oxidoreductase%2C catalytic domain%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding~KEGG: ajs:Ajs_4008 indolepyruvate ferredoxin oxidoreductase gene gene4639 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4574 Alide2_4575 Alide2_4575 Alide2_4575 4800612 4801085 + transcriptional regulator%2C AsnC family KEGG: dia:Dtpsy_3359 transcriptional regulator%2C AsnC family~PFAM: Transcription regulator AsnC-type%2C C-terminal~SMART: Transcription regulator AsnC-type gene gene4640 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4575 Alide2_4576 Alide2_4576 Alide2_4576 4801228 4802937 + protein of unknown function DUF894 DitE PFAM: Major facilitator superfamily%2C enterobactin exporter EntS~KEGG: dia:Dtpsy_3362 protein of unknown function DUF894 DitE gene gene4641 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4576 Alide2_4577 Alide2_4577 Alide2_4577 4803046 4804245 - MltA domain protein manually curated~PFAM: Lytic transglycosylase MltA%3B 3D~KEGG: ajs:Ajs_4013 MltA domain-containing protein~SMART: Lytic transglycosylase MltA gene gene4642 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4577 Alide2_4578 Alide2_4578 Alide2_4578 4804428 4805072 + OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: dia:Dtpsy_3364 OmpA/MotB domain protein gene gene4643 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4578 Alide2_4579 Alide2_4579 Alide2_4579 4805130 4805765 - two component transcriptional regulator%2C LuxR family KEGG: ajs:Ajs_4015 response regulator receiver protein~PFAM: Transcription regulator LuxR%2C C-terminal%3B Signal transduction response regulator%2C receiver domain~SMART: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal gene gene4644 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4579 Alide2_4580 Alide2_4580 Alide2_4580 4805765 4807858 - multi-sensor signal transduction histidine kinase TIGRFAM: PAS~PFAM: ATPase-like%2C ATP-binding domain%3B PAS fold%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain~KEGG: dia:Dtpsy_3366 PAS/PAC sensor signal transduction histidine kinase~SMART: ATPase-like%2C ATP-binding domain%3B PAS%3B PAC motif%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene4645 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4580 Alide2_4581 Alide2_4581 Alide2_4581 4807882 4808697 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~KEGG: dia:Dtpsy_3367 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase gene gene4646 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4581 Alide2_4582 Alide2_4582 Alide2_4582 4808694 4812782 - Conserved hypothetical protein CHP02099 TIGRFAM: Conserved hypothetical protein CHP02099~KEGG: dia:Dtpsy_3368 hypothetical protein gene gene4647 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4582 Alide2_4583 Alide2_4583 Alide2_4583 4812876 4815623 + (Glutamate--ammonia-ligase) adenylyltransferase KEGG: dia:Dtpsy_3369 (glutamate--ammonia-ligase) adenylyltransferase~PFAM: Glutamate-ammonia ligase adenylyltransferase%2C repeated domain%3B PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase gene gene4648 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4583 Alide2_4584 Alide2_4584 Alide2_4584 4815852 4816994 + efflux transporter%2C RND family%2C MFP subunit KEGG: dia:Dtpsy_3372 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene4649 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4584 Alide2_4585 Alide2_4585 Alide2_4585 4817007 4820066 + acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: ajs:Ajs_4023 acriflavin resistance protein gene gene4650 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4585 Alide2_4586 Alide2_4586 Alide2_4586 4820460 4821074 - Glutathione S-transferase domain protein PFAM: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal~KEGG: dia:Dtpsy_3375 glutathione S-transferase domain protein gene gene4651 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4586 Alide2_4587 Alide2_4587 Alide2_4587 4821187 4822566 + adenylosuccinate lyase TIGRFAM: Adenylosuccinate lyase~KEGG: dia:Dtpsy_3376 adenylosuccinate lyase~PFAM: Lyase 1%2C N-terminal%3B Adenylosuccinate lyase C-terminal/plant gene gene4652 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4587 Alide2_4588 Alide2_4588 Alide2_4588 4822636 4823196 + YaeQ family protein PFAM: YaeQ~KEGG: dia:Dtpsy_3377 YaeQ family protein gene gene4653 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4588 Alide2_4589 Alide2_4589 Alide2_4589 4823466 4823771 - hypothetical protein KEGG: dia:Dtpsy_3378 hypothetical protein gene gene4654 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4589 Alide2_4590 Alide2_4590 Alide2_4590 4823812 4824216 - protein of unknown function DUF1289 PFAM: Protein of unknown function DUF1289~KEGG: dia:Dtpsy_3379 protein of unknown function DUF1289 gene gene4655 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4590 Alide2_4591 Alide2_4591 Alide2_4591 4824624 4825361 + integral membrane protein%2C YjbE family KEGG: ajs:Ajs_4030 integral membrane protein TerC~TIGRFAM: Integral membrane protein YjbE~PFAM: Integral membrane protein TerC gene gene4656 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4591 Alide2_4592 Alide2_4592 Alide2_4592 4825396 4825866 + hypothetical protein KEGG: ajs:Ajs_4031 hypothetical protein gene gene4657 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4592 Alide2_4593 Alide2_4593 Alide2_4593 4825868 4826788 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: rme:Rmet_4070 LysR family transcriptional regulator gene gene4658 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4593 Alide2_4594 Alide2_4594 Alide2_4594 4826828 4828131 - pseudogene gene4659 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4594 Alide2_4595 Alide2_4595 Alide2_4595 4828290 4828646 + membrane protein of unknown function PFAM: Membrane protein of unknown function~KEGG: dia:Dtpsy_3382 membrane protein of unknown function gene gene4660 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4595 Alide2_4596 Alide2_4596 Alide2_4596 4828614 4830140 - peptidase M48 Ste24p PFAM: Peptidase M48~KEGG: dia:Dtpsy_3383 peptidase M48 Ste24p gene gene4661 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4596 Alide2_4597 Alide2_4597 Alide2_4597 4830290 4830775 + molybdenum cofactor biosynthesis protein C KEGG: ajs:Ajs_4034 GTP cyclohydrolase subunit MoaC~TIGRFAM: Molybdenum cofactor biosynthesis C~PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain gene gene4662 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4597 Alide2_4598 Alide2_4598 Alide2_4598 4831077 4832501 - hypothetical protein KEGG: nla:NLA_7720 hypothetical protein gene gene4663 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4598 Alide2_4599 Alide2_4599 Alide2_4599 4832520 4833290 - hypothetical protein KEGG: dia:Dtpsy_3386 FimB gene gene4664 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4599 Alide2_4600 Alide2_4600 Alide2_4600 4833400 4833978 - type IV pilin structural subunit manually curated~KEGG: pau:PA14_58730 type IV pilin structural subunit gene gene4665 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4600 Alide2_4601 Alide2_4601 Alide2_4601 4834263 4835051 - cyclic-AMP phosphodiesterase KEGG: pol:Bpro_4676 cyclic-AMP phosphodiesterase~PFAM: Beta-lactamase-like~SMART: Beta-lactamase-like gene gene4666 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4601 Alide2_4602 Alide2_4602 Alide2_4602 4835119 4835745 - FHA domain containing protein KEGG: ajs:Ajs_4043 FHA domain-containing protein~PFAM: Forkhead-associated (FHA) domain~SMART: Forkhead-associated (FHA) domain gene gene4667 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4602 Alide2_4603 Alide2_4603 Alide2_4603 4835807 4836613 - protein serine/threonine phosphatase KEGG: ajs:Ajs_4044 protein phosphatase 2C domain-containing protein~PFAM: Protein phosphatase 2C%2C N-terminal~SMART: Protein phosphatase 2C-like gene gene4668 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4603 Alide2_4604 Alide2_4604 Alide2_4604 4836840 4837523 - integral membrane protein%2C YjbE family KEGG: ajs:Ajs_4045 integral membrane protein TerC~TIGRFAM: Integral membrane protein YjbE~PFAM: Integral membrane protein TerC gene gene4669 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4604 Alide2_4605 Alide2_4605 Alide2_4605 4837665 4838558 - succinyl-CoA synthetase%2C alpha subunit SMART: CoA-binding~TIGRFAM: Succinyl-CoA ligase%2C alpha subunit~KEGG: dia:Dtpsy_3391 succinyl-CoA synthetase subunit alpha~PFAM: CoA-binding%3B ATP-citrate lyase/succinyl-CoA ligase gene gene4670 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4605 Alide2_4606 Alide2_4606 Alide2_4606 4838580 4839740 - succinyl-CoA synthetase%2C beta subunit TIGRFAM: Succinyl-CoA synthetase%2C beta subunit~KEGG: dia:Dtpsy_3392 succinyl-CoA synthetase subunit beta~PFAM: ATP-grasp fold%2C succinyl-CoA synthetase-type%3B ATP-citrate lyase/succinyl-CoA ligase gene gene4671 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4606 Alide2_4607 Alide2_4607 Alide2_4607 4839914 4840846 + N-acetyl-gamma-glutamyl-phosphate reductase SMART: Semialdehyde dehydrogenase%2C NAD-binding~TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase%2C type 2~KEGG: dia:Dtpsy_3393 N-acetyl-gamma-glutamyl-phosphate reductase~PFAM: Semialdehyde dehydrogenase%2C NAD-binding gene gene4672 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4607 Alide2_4608 Alide2_4608 Alide2_4608 4840955 4842094 - DNA protecting protein DprA KEGG: ajs:Ajs_4049 fis family transcriptional regulator~TIGRFAM: DNA recombination-mediator protein A~PFAM: DNA recombination-mediator protein A gene gene4673 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4608 Alide2_4609 Alide2_4609 Alide2_4609 4842117 4843337 - Peptidoglycan-binding lysin domain protein KEGG: ajs:Ajs_4050 peptidoglycan-binding LysM~PFAM: Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup gene gene4674 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4609 Alide2_4610 Alide2_4610 Alide2_4610 4843537 4844052 + Peptide deformylase TIGRFAM: Formylmethionine deformylase~HAMAP: Formylmethionine deformylase~KEGG: dia:Dtpsy_3396 peptide deformylase~PFAM: Formylmethionine deformylase gene gene4675 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4610 Alide2_4611 Alide2_4611 Alide2_4611 4844049 4844534 + putative lipoprotein transmembrane KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane gene gene4676 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4611 Alide2_4612 Alide2_4612 Alide2_4612 4844545 4845516 + Methionyl-tRNA formyltransferase PFAM: Formyl transferase%2C N-terminal%3B Formyl transferase%2C C-terminal~TIGRFAM: Methionyl-tRNA formyltransferase~HAMAP: Methionyl-tRNA formyltransferase~KEGG: ajs:Ajs_4053 methionyl-tRNA formyltransferase gene gene4677 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4612 Alide2_4613 Alide2_4613 Alide2_4613 4845513 4846262 + AzlC family protein PFAM: Branched-chain amino acid transport%2C permease~KEGG: ajs:Ajs_4054 AzlC family protein gene gene4678 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4613 Alide2_4614 Alide2_4614 Alide2_4614 4846259 4846594 + branched-chain amino acid transport PFAM: Branched-chain amino acid transport%2C AzlD~KEGG: dia:Dtpsy_3400 branched-chain amino acid transport gene gene4679 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4614 Alide2_4615 Alide2_4615 Alide2_4615 4846665 4847858 + Phosphoglycerate kinase HAMAP: Phosphoglycerate kinase~KEGG: dia:Dtpsy_3401 phosphoglycerate kinase~PFAM: Phosphoglycerate kinase gene gene4680 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4615 Alide2_4616 Alide2_4616 Alide2_4616 4848018 4848704 + hypothetical protein KEGG: dac:Daci_0827 hypothetical protein gene gene4681 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4616 Alide2_4617 Alide2_4617 Alide2_4617 4848701 4849255 + hypothetical protein KEGG: dac:Daci_0826 hypothetical protein gene gene4682 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4617 Alide2_4618 Alide2_4618 Alide2_4618 4849369 4850250 - protein of unknown function DUF6 transmembrane PFAM: Drug/metabolite transporter~KEGG: dia:Dtpsy_3402 protein of unknown function DUF6 transmembrane gene gene4683 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4618 Alide2_4619 Alide2_4619 Alide2_4619 4850300 4851124 + orotidine 5'-phosphate decarboxylase SMART: Orotidine 5'-phosphate decarboxylase domain~TIGRFAM: Orotidine 5'-phosphate decarboxylase%2C type 2~KEGG: dia:Dtpsy_3403 orotidine 5'-phosphate decarboxylase~PFAM: Orotidine 5'-phosphate decarboxylase domain gene gene4684 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4619 Alide2_4620 Alide2_4620 Alide2_4620 4851141 4852037 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_3404 transcriptional regulator%2C LysR family gene gene4685 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4620 Alide2_4621 Alide2_4621 Alide2_4621 4852157 4853149 + hypothetical protein KEGG: ajs:Ajs_4060 hypothetical protein gene gene4686 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4621 Alide2_4622 Alide2_4622 Alide2_4622 4853146 4854120 + Succinylglutamate desuccinylase/aspartoacylase PFAM: Succinylglutamate desuccinylase/aspartoacylase~KEGG: dia:Dtpsy_3406 hypothetical protein gene gene4687 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4622 Alide2_4623 Alide2_4623 Alide2_4623 4854250 4856217 + methyl-accepting chemotaxis sensory transducer KEGG: aav:Aave_4703 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene4688 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4623 Alide2_4624 Alide2_4624 Alide2_4624 4856252 4859320 - UvrABC system protein A TIGRFAM: Excinuclease ABC%2C A subunit~HAMAP: Excinuclease ABC%2C A subunit~KEGG: dia:Dtpsy_3409 excinuclease ABC%2C A subunit~PFAM: ABC transporter-like gene gene4689 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4624 Alide2_4625 Alide2_4625 Alide2_4625 4859503 4860681 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: ajs:Ajs_4065 major facilitator superfamily transporter gene gene4690 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4625 Alide2_4626 Alide2_4626 Alide2_4626 4860824 4861357 + single-strand binding protein KEGG: ajs:Ajs_4066 single-strand binding protein~TIGRFAM: Single-strand DNA-binding~PFAM: Primosome PriB/single-strand DNA-binding gene gene4691 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4626 Alide2_4627 Alide2_4627 Alide2_4627 4861464 4863125 - L-lactate transport KEGG: ajs:Ajs_4067 L-lactate transport~TIGRFAM: L-lactate permease~PFAM: L-lactate permease gene gene4692 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4627 Alide2_4628 Alide2_4628 Alide2_4628 4863365 4864486 - tRNA-specific 2-thiouridylase mnmA TIGRFAM: tRNA-specific 2-thiouridylase~HAMAP: tRNA-specific 2-thiouridylase~KEGG: dia:Dtpsy_3413 tRNA-specific 2-thiouridylase MnmA~PFAM: tRNA-specific 2-thiouridylase gene gene4693 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4628 Alide2_4629 Alide2_4629 Alide2_4629 4864483 4865469 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: vei:Veis_0298 LysR family transcriptional regulator gene gene4694 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4629 Alide2_4630 Alide2_4630 Alide2_4630 4865528 4866616 + PrpF protein PFAM: PrpF protein~KEGG: vei:Veis_0299 hypothetical protein gene gene4695 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4630 Alide2_4631 Alide2_4631 Alide2_4631 4866669 4867658 + hypothetical protein KEGG: vei:Veis_0300 hypothetical protein gene gene4696 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4631 Alide2_4632 Alide2_4632 Alide2_4632 4867680 4868765 + porin Gram-negative type PFAM: Porin%2C Gram-negative type~KEGG: vei:Veis_0301 porin gene gene4697 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4632 Alide2_4633 Alide2_4633 Alide2_4633 4868843 4869787 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: pna:Pnap_3816 LysR family transcriptional regulator gene gene4698 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4633 Alide2_4634 Alide2_4634 Alide2_4634 4870025 4871461 + precorrin 3B synthase CobZ KEGG: dia:Dtpsy_3415 tricarballylate dehydrogenase~TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobZ%2C precorrin 3B synthase~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal gene gene4699 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4634 Alide2_4635 Alide2_4635 Alide2_4635 4871448 4872635 + CitB domain protein TIGRFAM: Citrate utilization protein B~KEGG: ajs:Ajs_4071 CitB domain-containing protein gene gene4700 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4635 Alide2_4636 Alide2_4636 Alide2_4636 4872721 4873698 + hypothetical protein KEGG: dia:Dtpsy_3417 hypothetical protein gene gene4701 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4636 Alide2_4637 Alide2_4637 Alide2_4637 4873741 4875417 - sigma54 specific transcriptional regulator%2C Fis family KEGG: dia:Dtpsy_3418 sigma54 specific transcriptional regulator%2C fis family~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Helix-turn-helix%2C Fis-type~SMART: ATPase%2C AAA+ type%2C core gene gene4702 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4637 Alide2_4638 Alide2_4638 Alide2_4638 4875579 4877126 + Propionyl-CoA carboxylase KEGG: dia:Dtpsy_3419 propionyl-CoA carboxylase~PFAM: Carboxyl transferase gene gene4703 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4638 Alide2_4639 Alide2_4639 Alide2_4639 4877156 4878166 + hypothetical protein KEGG: dac:Daci_1098 hypothetical protein gene gene4704 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4639 Alide2_4640 Alide2_4640 Alide2_4640 4878176 4880254 + CoA-binding domain protein KEGG: dia:Dtpsy_3421 CoA-binding domain protein~PFAM: CoA-binding~SMART: CoA-binding gene gene4705 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4640 Alide2_4641 Alide2_4641 Alide2_4641 4880251 4881618 + Biotin carboxylase PFAM: Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding%3B Biotin carboxylase%2C C-terminal%3B Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal~KEGG: dac:Daci_1096 carbamoyl-phosphate synthase subunit L~SMART: Biotin carboxylase%2C C-terminal gene gene4706 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4641 Alide2_4642 Alide2_4642 Alide2_4642 4881630 4881842 + biotin/lipoyl attachment domain-containing protein PFAM: Biotin/lipoyl attachment~KEGG: dia:Dtpsy_3423 biotin/lipoyl attachment domain-containing protein gene gene4707 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4642 Alide2_4643 Alide2_4643 Alide2_4643 4881839 4882273 + phenylacetic acid degradation-related protein KEGG: dia:Dtpsy_3424 thioesterase superfamily protein~TIGRFAM: Phenylacetic acid degradation-related protein~PFAM: Thioesterase superfamily gene gene4708 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4643 Alide2_4644 Alide2_4644 Alide2_4644 4882300 4882785 - NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: dia:Dtpsy_3425 NUDIX hydrolase gene gene4709 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4644 Alide2_4645 Alide2_4645 Alide2_4645 4882882 4883265 + hypothetical protein KEGG: dia:Dtpsy_3426 hypothetical protein gene gene4710 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4645 Alide2_4646 Alide2_4646 Alide2_4646 4883375 4885492 + TonB-dependent copper receptor KEGG: ajs:Ajs_4075 TonB-dependent copper receptor~TIGRFAM: TonB-dependent copper receptor~PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug gene gene4711 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4646 Alide2_4647 Alide2_4647 Alide2_4647 4885713 4886177 + phenylacetic acid degradation-related protein KEGG: met:M446_5737 thioesterase superfamily protein~TIGRFAM: Phenylacetic acid degradation-related protein~PFAM: Thioesterase superfamily gene gene4712 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4647 Alide2_4648 Alide2_4648 Alide2_4648 4886227 4887105 + transcriptional regulator%2C IclR family KEGG: bxe:Bxe_C0866 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene4713 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4648 Alide2_4649 Alide2_4649 Alide2_4649 4887140 4888117 - hypothetical protein KEGG: aav:Aave_3937 hypothetical protein gene gene4714 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4649 Alide2_4650 Alide2_4650 Alide2_4650 4888153 4889346 - Formyl-CoA transferase KEGG: rpf:Rpic12D_1541 L-carnitine dehydratase/bile acid-inducible protein F~PFAM: CoA-transferase family III gene gene4715 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4650 Alide2_4651 Alide2_4651 Alide2_4651 4889348 4890487 - hypothetical protein KEGG: pzu:PHZ_c2530 hypothetical protein gene gene4716 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4651 Alide2_4652 Alide2_4652 Alide2_4652 4890527 4892077 - Acetate--CoA ligase KEGG: gka:GK2759 acetyl-CoA synthetase (acetate-CoA ligase)~PFAM: AMP-dependent synthetase/ligase gene gene4717 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4652 Alide2_4653 Alide2_4653 Alide2_4653 4892324 4893031 - riboflavin synthase%2C alpha subunit TIGRFAM: Lumazine-binding protein~KEGG: ajs:Ajs_4077 riboflavin synthase subunit alpha~PFAM: Lumazine-binding protein gene gene4718 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4653 Alide2_4654 Alide2_4654 Alide2_4654 4893161 4893775 + Lysine exporter protein (LYSE/YGGA) PFAM: Lysine exporter protein (LYSE/YGGA)~KEGG: axy:AXYL_05416 LysE type translocator family protein 14 gene gene4719 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4654 Alide2_4655 Alide2_4655 Alide2_4655 4893782 4895155 - integral membrane sensor signal transduction histidine kinase KEGG: ajs:Ajs_4082 integral membrane sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain~SMART: ATPase-like%2C ATP-binding domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain gene gene4720 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4655 Alide2_4656 Alide2_4656 Alide2_4656 4895408 4896085 - two component transcriptional regulator%2C winged helix family KEGG: dia:Dtpsy_3431 two component transcriptional regulator%2C winged helix family~PFAM: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Signal transduction response regulator%2C C-terminal gene gene4721 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4656 Alide2_4657 Alide2_4657 Alide2_4657 4896085 4896402 - Propeptide PepSY amd peptidase M4 PFAM: Peptidase M4%2C propeptide%2C PepSY~KEGG: dia:Dtpsy_3432 propeptide PepSY amd peptidase M4 gene gene4722 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4657 Alide2_4658 Alide2_4658 Alide2_4658 4896541 4896852 + hypothetical protein KEGG: axy:AXYL_05206 hypothetical protein gene gene4723 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4658 Alide2_4659 Alide2_4659 Alide2_4659 4896886 4898268 + Ferric reductase domain protein transmembrane component domain protein PFAM: Flavoprotein transmembrane component%3B FAD-binding 8~KEGG: dia:Dtpsy_3433 ferric reductase domain protein transmembrane component gene gene4724 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4659 Alide2_4660 Alide2_4660 Alide2_4660 4898344 4898898 + Cytochrome b/b6 domain protein PFAM: Cytochrome b/b6%2C N-terminal~KEGG: pag:PLES_43981 cytochrome b561 gene gene4725 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4660 Alide2_4661 Alide2_4661 Alide2_4661 4898947 4899315 + hypothetical protein KEGG: dia:Dtpsy_3434 hypothetical protein gene gene4726 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4661 Alide2_4662 Alide2_4662 Alide2_4662 4899338 4899817 + hypothetical protein KEGG: ajs:Ajs_4087 hypothetical protein gene gene4727 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4662 Alide2_4663 Alide2_4663 Alide2_4663 4899814 4902024 + oxidoreductase FAD/NAD(P)-binding domain protein PFAM: Oxidoreductase FAD/NAD(P)-binding%3B Flavodoxin/nitric oxide synthase%3B PepSY-associated TM helix%3B Oxidoreductase%2C FAD-binding domain~KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit gene gene4728 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4663 Alide2_4664 Alide2_4664 Alide2_4664 4902005 4902982 + ApbE family lipoprotein PFAM: Thiamine synthesis ApbE/UPF0280~KEGG: dia:Dtpsy_3437 ApbE family lipoprotein gene gene4729 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4664 Alide2_4665 Alide2_4665 Alide2_4665 4903084 4903389 + hypothetical protein KEGG: ajs:Ajs_4090 hypothetical protein gene gene4730 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4665 Alide2_4666 Alide2_4666 Alide2_4666 4903405 4903872 - hypothetical protein KEGG: ajs:Ajs_4091 hypothetical protein gene gene4731 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4666 Alide2_4667 Alide2_4667 Alide2_4667 4903944 4906493 + ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC SMART: ATPase%2C P-type cation-transporter%2C N-terminal~TIGRFAM: ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~KEGG: dia:Dtpsy_3444 ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: ATPase%2C P-type%2C ATPase-associated domain%3B ATPase%2C P-type cation-transporter%2C N-terminal%3B Haloacid dehalogenase-like hydrolase%3B ATPase%2C P-type cation-transporter%2C C-terminal gene gene4732 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4667 Alide2_4668 Alide2_4668 Alide2_4668 4907159 4907299 + hypothetical protein gene gene4733 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4668 Alide2_4669 Alide2_4669 Alide2_4669 4907414 4907906 + pseudogene gene4734 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4669 Alide2_4670 Alide2_4670 Alide2_4670 4907984 4909078 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase%2C NPD~KEGG: bpt:Bpet0267 hypothetical protein gene gene4735 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4670 Alide2_4671 Alide2_4671 Alide2_4671 4909080 4910051 - hypothetical protein KEGG: bpt:Bpetpseudo_01 hypothetical protein gene gene4736 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4671 Alide2_4672 Alide2_4672 Alide2_4672 4910081 4911235 - Butyryl-CoA dehydrogenase KEGG: bpt:Bpet0266 acyl-CoA dehydrogenase~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene4737 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4672 Alide2_4673 Alide2_4673 Alide2_4673 4911254 4912063 - transcriptional regulator%2C IclR family KEGG: bpt:Bpet0265 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene4738 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4673 Alide2_4674 Alide2_4674 Alide2_4674 4912253 4913593 + Formyl-CoA transferase KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase~PFAM: CoA-transferase family III gene gene4739 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4674 Alide2_4675 Alide2_4675 Alide2_4675 4913611 4914612 + quinone oxidoreductase%2C YhdH/YhfP family TIGRFAM: Quinone oxidoreductase putative%2C YhdH/YhfP~PFAM: Alcohol dehydrogenase GroES-like%3B Alcohol dehydrogenase%2C C-terminal~KEGG: bpt:Bpet0263 alcohol dehydrogenase III~SMART: Polyketide synthase%2C enoylreductase gene gene4740 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4675 Alide2_4676 Alide2_4676 Alide2_4676 4914653 4914824 + pseudogene gene4741 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4676 Alide2_4677 Alide2_4677 Alide2_4677 4914842 4916074 - Acyl-CoA dehydrogenase KEGG: sth:STH2463 acyl-CoA dehydrogenase%2C short-chain specific~PFAM: Acyl-CoA oxidase/dehydrogenase%2C type 1%3B Acyl-CoA oxidase/dehydrogenase%2C central domain%3B Acyl-CoA dehydrogenase%2C N-terminal gene gene4742 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4677 Alide2_4678 Alide2_4678 Alide2_4678 4916088 4917074 - hypothetical protein KEGG: bpt:Bpetpseudo_01 hypothetical protein gene gene4743 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4678 Alide2_4679 Alide2_4679 Alide2_4679 4917112 4917972 - transcriptional regulator%2C IclR family KEGG: bpt:Bpet0265 IclR family transcriptional regulator~PFAM: Transcription regulator IclR%2C N-terminal%3B Transcription regulator IclR%2C C-terminal~SMART: Transcription regulator IclR%2C N-terminal gene gene4744 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4679 Alide2_4680 Alide2_4680 Alide2_4680 4918057 4919292 + Formyl-CoA transferase KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase~PFAM: CoA-transferase family III gene gene4745 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4680 Alide2_4681 Alide2_4681 Alide2_4681 4919289 4920230 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: vei:Veis_4196 LysR family transcriptional regulator gene gene4746 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4681 Alide2_4682 Alide2_4682 Alide2_4682 4920337 4921323 + hypothetical protein KEGG: vap:Vapar_1641 hypothetical protein gene gene4747 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4682 Alide2_4683 Alide2_4683 Alide2_4683 4921335 4922954 + gamma-glutamyltransferase TIGRFAM: Gamma-glutamyltranspeptidase~KEGG: vap:Vapar_1640 gamma-glutamyltransferase~PFAM: Gamma-glutamyltranspeptidase gene gene4748 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4683 Alide2_4684 Alide2_4684 Alide2_4684 4922970 4923632 - hypothetical protein gene gene4749 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4684 Alide2_4685 Alide2_4685 Alide2_4685 4923785 4925452 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal~KEGG: ajs:Ajs_4093 twin-arginine translocation pathway signal gene gene4750 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4685 Alide2_4686 Alide2_4686 Alide2_4686 4925452 4927005 - Spermidine synthase HAMAP: Spermine synthase~KEGG: dia:Dtpsy_3446 spermidine synthase~PFAM: Spermine synthase gene gene4751 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4686 Alide2_4687 Alide2_4687 Alide2_4687 4927019 4927240 - protein of unknown function DUF350 PFAM: Protein of unknown function DUF350~KEGG: dia:Dtpsy_3447 protein of unknown function DUF350 gene gene4752 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4687 Alide2_4688 Alide2_4688 Alide2_4688 4927277 4928761 - putative transmembrane protein KEGG: dia:Dtpsy_3448 putative transmembrane protein gene gene4753 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4688 Alide2_4689 Alide2_4689 Alide2_4689 4928830 4929867 - band 7 protein PFAM: Band 7 protein~KEGG: ajs:Ajs_4099 putative transmembrane protein gene gene4754 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4689 Alide2_4690 Alide2_4690 Alide2_4690 4930036 4930344 + Protein of unknown function DUF2061%2C membrane PFAM: Protein of unknown function DUF2061%2C membrane~KEGG: dia:Dtpsy_3450 hypothetical protein gene gene4755 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4690 Alide2_4691 Alide2_4691 Alide2_4691 4930266 4930589 - flagellar basal body rod protein PFAM: Flagellar basal body rod protein%2C N-terminal%3B Domain of unknown function DUF1078%2C C-terminal~KEGG: dia:Dtpsy_3453 flagellar basal body rod protein gene gene4756 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4691 Alide2_4692 Alide2_4692 Alide2_4692 4930651 4931595 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: dia:Dtpsy_3454 transcriptional regulator%2C LysR family gene gene4757 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4692 Alide2_4693 Alide2_4693 Alide2_4693 4931687 4933042 + Beta-alanine--pyruvate transaminase KEGG: xtr:100492879 omega-amino acid--pyruvate aminotransferase-like~PFAM: Aminotransferase class-III gene gene4758 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4693 Alide2_4694 Alide2_4694 Alide2_4694 4933112 4934629 + methylmalonate-semialdehyde dehydrogenase TIGRFAM: Methylmalonate-semialdehyde dehydrogenase~KEGG: dia:Dtpsy_3456 methylmalonate-semialdehyde dehydrogenase~PFAM: Aldehyde dehydrogenase domain gene gene4759 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4694 Alide2_4695 Alide2_4695 Alide2_4695 4934721 4935854 + diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted%3B MASE2~KEGG: aav:Aave_4748 diguanylate cyclase~SMART: Diguanylate cyclase%2C predicted gene gene4760 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4695 Alide2_4696 Alide2_4696 Alide2_4696 4935867 4936706 - GntR domain protein KEGG: dia:Dtpsy_3457 GntR domain protein~PFAM: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR~SMART: GntR%2C C-terminal%3B HTH transcriptional regulator%2C GntR gene gene4761 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4696 Alide2_4697 Alide2_4697 Alide2_4697 4936928 4938133 + extracellular ligand-binding receptor KEGG: dia:Dtpsy_3458 extracellular ligand-binding receptor gene gene4762 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4697 Alide2_4698 Alide2_4698 Alide2_4698 4938168 4939028 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dia:Dtpsy_3459 inner-membrane translocator gene gene4763 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4698 Alide2_4699 Alide2_4699 Alide2_4699 4939034 4940029 + ABC-type transporter%2C integral membrane subunit PFAM: ABC transporter permease~KEGG: dac:Daci_6025 inner-membrane translocator gene gene4764 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4699 Alide2_4700 Alide2_4700 Alide2_4700 4940026 4940808 + Monosaccharide-transporting ATPase PFAM: ABC transporter-like~KEGG: dia:Dtpsy_3461 ABC transporter related~SMART: ATPase%2C AAA+ type%2C core gene gene4765 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4700 Alide2_4701 Alide2_4701 Alide2_4701 4940805 4941581 + ABC transporter related protein KEGG: dac:Daci_6027 ABC transporter-like protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene4766 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4701 Alide2_4702 Alide2_4702 Alide2_4702 4941595 4942851 + amidase%2C hydantoinase/carbamoylase family TIGRFAM: Amidase%2C hydantoinase/carbamoylase~KEGG: dia:Dtpsy_3463 amidase%2C hydantoinase/carbamoylase family~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation gene gene4767 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4702 Alide2_4703 Alide2_4703 Alide2_4703 4942848 4944314 + Microcystin LR degradation protein MlrC PFAM: Microcystin LR degradation protein MlrC%2C N-terminal%3B Microcystin LR degradation protein MlrC%2C C-terminal~KEGG: dia:Dtpsy_3464 microcystin LR degradation protein MlrC-like protein gene gene4768 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4703 Alide2_4704 Alide2_4704 Alide2_4704 4944462 4946771 + phosphate acetyl/butaryl transferase KEGG: dia:Dtpsy_3465 malic enzyme~PFAM: Phosphate acetyl/butaryl transferase%3B Malic enzyme%2C NAD-binding%3B Malic enzyme%2C N-terminal~SMART: Malic enzyme%2C NAD-binding gene gene4769 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4704 Alide2_4705 Alide2_4705 Alide2_4705 4946905 4947309 + guanine-specific ribonuclease N1 and T1 PFAM: Guanine-specific ribonuclease N1/T1~KEGG: dia:Dtpsy_3466 guanine-specific ribonuclease N1 and T1 gene gene4770 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4705 Alide2_4706 Alide2_4706 Alide2_4706 4947450 4947875 + Barstar (barnase inhibitor) PFAM: Barstar (barnase inhibitor)~KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor) gene gene4771 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4706 Alide2_4707 Alide2_4707 Alide2_4707 4948105 4948872 - dimethyladenosine transferase TIGRFAM: Ribosomal RNA adenine dimethylase~PFAM: Ribosomal RNA adenine methylase transferase~KEGG: dia:Dtpsy_3468 dimethyladenosine transferase~SMART: Ribosomal RNA adenine methylase transferase%2C N-terminal gene gene4772 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4707 Alide2_4708 Alide2_4708 Alide2_4708 4948869 4950284 - Chaperone surA KEGG: dia:Dtpsy_3469 SurA domain protein~HAMAP: Peptidyl-prolyl isomerase SurA~PFAM: SurA N-terminal%3B Peptidyl-prolyl cis-trans isomerase%2C PpiC-type gene gene4773 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4708 Alide2_4709 Alide2_4709 Alide2_4709 4950318 4952762 - LPS-assembly protein lptD KEGG: dia:Dtpsy_3470 organic solvent tolerance protein~HAMAP: Lipopolysccharide assembly%2C LptD~PFAM: Organic solvent tolerance protein%2C C-terminal gene gene4774 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4709 Alide2_4710 Alide2_4710 Alide2_4710 4952836 4953951 + aminoglycoside phosphotransferase PFAM: Aminoglycoside phosphotransferase~KEGG: ajs:Ajs_4113 aminoglycoside phosphotransferase gene gene4775 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4710 Alide2_4711 Alide2_4711 Alide2_4711 4954019 4954732 + Ribosomal RNA small subunit methyltransferase E KEGG: dia:Dtpsy_3472 16S ribosomal RNA methyltransferase RsmE~TIGRFAM: Ribosomal RNA small subunit methyltransferase E~PFAM: Ribosomal RNA small subunit methyltransferase E gene gene4776 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4711 Alide2_4712 Alide2_4712 Alide2_4712 4954732 4956066 + hypothetical protein KEGG: dia:Dtpsy_3473 hypothetical protein gene gene4777 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4712 Alide2_4713 Alide2_4713 Alide2_4713 4956059 4956763 + hypothetical protein KEGG: ajs:Ajs_4116 hypothetical protein gene gene4778 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4713 Alide2_4714 Alide2_4714 Alide2_4714 4956764 4959601 + SMC domain protein PFAM: RecF/RecN/SMC~KEGG: dia:Dtpsy_3475 SMC domain protein gene gene4779 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4714 Alide2_4715 Alide2_4715 Alide2_4715 4959674 4961137 - peptidase M20 PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation~KEGG: dia:Dtpsy_3479 peptidase M20 gene gene4780 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4715 Alide2_4716 Alide2_4716 Alide2_4716 4961211 4962398 - diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted~KEGG: dia:Dtpsy_3480 diguanylate cyclase~SMART: Diguanylate cyclase%2C predicted gene gene4781 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4716 Alide2_4717 Alide2_4717 Alide2_4717 4962608 4963192 - methionine biosynthesis protein MetW KEGG: dia:Dtpsy_3482 methionine biosynthesis protein MetW~TIGRFAM: Methionine biosynthesis MetW~PFAM: Methionine biosynthesis MetW gene gene4782 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4717 Alide2_4718 Alide2_4718 Alide2_4718 4963189 4964319 - homoserine O-acetyltransferase TIGRFAM: Homoserine acetyltransferase~KEGG: ajs:Ajs_4125 homoserine O-acetyltransferase~PFAM: Alpha/beta hydrolase fold-1 gene gene4783 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4718 Alide2_4719 Alide2_4719 Alide2_4719 4964452 4965030 - protein of unknown function UPF0016 PFAM: Uncharacterised protein family UPF0016~KEGG: dia:Dtpsy_3484 protein of unknown function UPF0016 gene gene4784 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4719 Alide2_4720 Alide2_4720 Alide2_4720 4965502 4965852 + RNP-1 like RNA-binding protein KEGG: dia:Dtpsy_3485 RNP-1 like RNA-binding protein~PFAM: RNA recognition motif domain~SMART: RNA recognition motif domain gene gene4785 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4720 Alide2_4721 Alide2_4721 Alide2_4721 4966088 4966522 + RNP-1 like RNA-binding protein KEGG: ajs:Ajs_4128 RNP-1 like RNA-binding protein~PFAM: RNA recognition motif domain~SMART: RNA recognition motif domain gene gene4786 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4721 Alide2_4722 Alide2_4722 Alide2_4722 4966609 4967403 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: ajs:Ajs_4129 short chain dehydrogenase gene gene4787 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4722 Alide2_4723 Alide2_4723 Alide2_4723 4967414 4968055 - protein of unknown function DUF1239 PFAM: Lipopolysccharide assembly%2C LptC-related~KEGG: dia:Dtpsy_3488 protein of unknown function DUF1239 gene gene4788 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4723 Alide2_4724 Alide2_4724 Alide2_4724 4968052 4968624 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase~KEGG: dia:Dtpsy_3489 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family~PFAM: HAD superfamily hydrolase-like%2C type 3 gene gene4789 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4724 Alide2_4725 Alide2_4725 Alide2_4725 4968624 4969625 - KpsF/GutQ family protein SMART: Cystathionine beta-synthase%2C core~TIGRFAM: KpsF/GutQ~KEGG: ajs:Ajs_4132 KpsF/GutQ family protein~PFAM: Sugar isomerase (SIS)%3B Cystathionine beta-synthase%2C core gene gene4790 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4725 Alide2_4726 Alide2_4726 Alide2_4726 4969674 4971659 + sodium/hydrogen exchanger PFAM: Cation/H+ exchanger%3B Regulator of K+ conductance%2C N-terminal%3B Regulator of K+ conductance%2C C-terminal~KEGG: ajs:Ajs_4133 potassium efflux system protein gene gene4791 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4726 Alide2_4727 Alide2_4727 Alide2_4727 4971697 4972251 + Adenine phosphoribosyltransferase TIGRFAM: Adenine phosphoribosyl transferase~HAMAP: Adenine phosphoribosyl transferase~KEGG: dia:Dtpsy_3492 adenine phosphoribosyltransferase~PFAM: Phosphoribosyltransferase gene gene4792 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4727 Alide2_4728 Alide2_4728 Alide2_4728 4972298 4973185 - hypothetical protein KEGG: ajs:Ajs_4136 hypothetical protein gene gene4793 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4728 Alide2_4729 Alide2_4729 Alide2_4729 4973308 4973793 - putative transcriptional regulator%2C Crp/Fnr family KEGG: dia:Dtpsy_3494 cyclic nucleotide-binding protein~PFAM: Cyclic nucleotide-binding domain~SMART: Cyclic nucleotide-binding domain gene gene4794 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4729 Alide2_4730 Alide2_4730 Alide2_4730 4973876 4975273 - tRNA modification GTPase mnmE TIGRFAM: tRNA modification GTPase TrmE%3B Small GTP-binding protein~HAMAP: tRNA modification GTPase TrmE~KEGG: ajs:Ajs_4138 tRNA modification GTPase TrmE~PFAM: GTP-binding protein TrmE%2C N-terminal%3B GTP-binding protein%2C HSR1-related gene gene4795 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4730 Alide2_4731 Alide2_4731 Alide2_4731 4975351 4976238 - ABC-type transporter%2C periplasmic subunit family 3 KEGG: aav:Aave_1937 extracellular solute-binding protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene4796 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4731 Alide2_4732 Alide2_4732 Alide2_4732 4976508 4977704 + D-amino-acid dehydrogenase KEGG: vap:Vapar_1545 D-amino-acid dehydrogenase~PFAM: FAD dependent oxidoreductase gene gene4797 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4732 Alide2_4733 Alide2_4733 Alide2_4733 4977708 4978613 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: aav:Aave_1935 LysR family transcriptional regulator gene gene4798 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4733 Alide2_4734 Alide2_4734 Alide2_4734 4978642 4979382 - aspartate racemase KEGG: aav:Aave_1663 aspartate racemase~TIGRFAM: Aspartate racemase~PFAM: Asp/Glu/hydantoin racemase gene gene4799 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4734 Alide2_4735 Alide2_4735 Alide2_4735 4979379 4980197 - peptidase M55 D-aminopeptidase PFAM: Peptidase M55%2C D-aminopeptidase~KEGG: aav:Aave_1662 D-aminopeptidase DppA gene gene4800 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4735 Alide2_4736 Alide2_4736 Alide2_4736 4980262 4981299 - peptidase S58 DmpA PFAM: Peptidase S58%2C DmpA~KEGG: aav:Aave_1661 aminopeptidase DmpA gene gene4801 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4736 Alide2_4737 Alide2_4737 Alide2_4737 4981296 4982204 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: aav:Aave_1660 binding-protein-dependent transport systems inner membrane component gene gene4802 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4737 Alide2_4738 Alide2_4738 Alide2_4738 4982212 4983132 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: aav:Aave_1659 binding-protein-dependent transport systems inner membrane component gene gene4803 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4738 Alide2_4739 Alide2_4739 Alide2_4739 4983201 4984745 - ABC-type transporter%2C periplasmic subunit PFAM: Bacterial extracellular solute-binding protein%2C family 5~KEGG: aav:Aave_1658 extracellular solute-binding protein gene gene4804 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4739 Alide2_4740 Alide2_4740 Alide2_4740 4984837 4986711 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit TIGRFAM: Oligopeptide/dipeptide ABC transporter%2C ATP-binding protein%2C C-terminal~PFAM: ABC transporter-like%3B Oligopeptide/dipeptide ABC transporter%2C C-terminal~KEGG: aav:Aave_1657 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~SMART: ATPase%2C AAA+ type%2C core gene gene4805 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4740 Alide2_4741 Alide2_4741 Alide2_4741 4986728 4987726 - Beta-aspartyl-peptidase KEGG: aav:Aave_1656 asparaginase~PFAM: Peptidase T2%2C asparaginase 2 gene gene4806 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4741 Alide2_4742 Alide2_4742 Alide2_4742 4987723 4988655 - transcriptional regulator%2C RpiR family PFAM: Sugar isomerase (SIS)%3B Helix-turn-helix protein RpiR~KEGG: aav:Aave_1655 RpiR family transcriptional regulator gene gene4807 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4742 Alide2_4743 Alide2_4743 Alide2_4743 4988866 4989524 - pseudogene gene4808 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4743 Alide2_4744 Alide2_4744 Alide2_4744 4989520 4990362 - pseudogene gene4809 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4744 Alide2_4745 Alide2_4745 Alide2_4745 4990775 4992361 - ABC-type transporter%2C periplasmic subunit PFAM: Bacterial extracellular solute-binding protein%2C family 5~KEGG: ajs:Ajs_4139 extracellular solute-binding protein gene gene4810 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4745 Alide2_4746 Alide2_4746 Alide2_4746 4992469 4994163 - membrane protein insertase%2C YidC/Oxa1 family domain containing KEGG: dia:Dtpsy_3542 YidC translocase/secretase~TIGRFAM: Membrane insertion protein%2C OxaA/YidC%2C bacterial%3B Membrane insertion protein%2C OxaA/YidC~PFAM: Membrane insertion protein%2C OxaA/YidC gene gene4811 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4746 Alide2_4747 Alide2_4747 Alide2_4747 4994160 4994453 - protein of unknown function DUF37 KEGG: ajs:Ajs_4141 hypothetical protein~TIGRFAM: Protein of unknown function DUF37~PFAM: Protein of unknown function DUF37 gene gene4812 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4747 Alide2_4748 Alide2_4748 Alide2_4748 4994450 4994890 - ribonuclease P protein PFAM: Ribonuclease P~KEGG: dia:Dtpsy_3544 hypothetical protein gene gene4813 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4748 Alide2_4749 Alide2_4749 Alide2_4749 4994933 4995067 - 50S ribosomal protein L34 TIGRFAM: Ribosomal protein L34~HAMAP: Ribosomal protein L34~KEGG: vei:Veis_5015 50S ribosomal protein L34~PFAM: Ribosomal protein L34 gene gene4814 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4749 Alide2_4750 Alide2_4750 Alide2_4750 17 394 + hypothetical protein KEGG: ajs:Ajs_4195 hypothetical protein gene gene4815 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4750 Alide2_4751 Alide2_4751 Alide2_4751 396 2393 + Type IV secretion system%2C TraD%2C DNA-binding domain protein PFAM: Type IV secretion system%2C TraD%2C DNA-binding domain%3B Ti-type conjugative transfer system%2C TraG-like~KEGG: ajs:Ajs_4194 hypothetical protein gene gene4816 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4751 Alide2_4752 Alide2_4752 Alide2_4752 2405 2860 + putative thiol:disulfide interchange transmembrane protein KEGG: ajs:Ajs_4193 putative thiol:disulfide interchange transmembrane protein gene gene4817 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4752 Alide2_4753 Alide2_4753 Alide2_4753 2857 5742 + conjugative relaxase domain protein KEGG: ajs:Ajs_4192 TrwC protein~TIGRFAM: Conjugative relaxase%2C N-terminal~PFAM: TrwC relaxase gene gene4818 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4753 Alide2_4754 Alide2_4754 Alide2_4754 5884 6096 + hypothetical protein gene gene4819 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4754 Alide2_4755 Alide2_4755 Alide2_4755 6187 7041 + YheO-like domain-containing protein PFAM: YheO-like~KEGG: ajs:Ajs_4191 hypothetical protein gene gene4820 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4755 Alide2_4756 Alide2_4756 Alide2_4756 7074 7349 + Domain of unknown function DUF1805 PFAM: Protein of unknown function DUF1805~KEGG: ajs:Ajs_4190 hypothetical protein gene gene4821 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4756 Alide2_4757 Alide2_4757 Alide2_4757 7358 8326 + integral membrane sensor signal transduction histidine kinase KEGG: ajs:Ajs_4189 integral membrane sensor signal transduction histidine kinase~PFAM: ATPase-like%2C ATP-binding domain~SMART: ATPase-like%2C ATP-binding domain gene gene4822 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4757 Alide2_4758 Alide2_4758 Alide2_4758 8295 8954 - two component transcriptional regulator%2C LuxR family KEGG: ajs:Ajs_4188 two component LuxR family transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal~SMART: Signal transduction response regulator%2C receiver domain%3B Transcription regulator LuxR%2C C-terminal gene gene4823 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4758 Alide2_4759 Alide2_4759 Alide2_4759 9438 9938 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: ajs:Ajs_4187 lytic transglycosylase%2C catalytic gene gene4824 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4759 Alide2_4760 Alide2_4760 Alide2_4760 9940 10323 + hypothetical protein KEGG: ajs:Ajs_4186 hypothetical protein gene gene4825 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4760 Alide2_4761 Alide2_4761 Alide2_4761 10418 10750 + Conjugal transfer protein TrbC PFAM: Conjugal transfer%2CTrbC~KEGG: ajs:Ajs_4185 hypothetical protein gene gene4826 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4761 Alide2_4762 Alide2_4762 Alide2_4762 10766 11059 + type IV conjugative transfer system protein TraL KEGG: ajs:Ajs_4184 hypothetical protein~TIGRFAM: Type IV conjugative transfer system%2C protein TraL~PFAM: Type IV conjugative transfer system%2C protein TraL gene gene4827 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4762 Alide2_4763 Alide2_4763 Alide2_4763 11074 11667 + hypothetical protein KEGG: ajs:Ajs_4183 hypothetical protein gene gene4828 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4763 Alide2_4764 Alide2_4764 Alide2_4764 11777 12340 + hypothetical protein KEGG: ajs:Ajs_4182 hypothetical protein gene gene4829 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4764 Alide2_4765 Alide2_4765 Alide2_4765 12333 13682 + conjugation TrbI family protein PFAM: Type IV secretion system%2C VirB10 / TraB / TrbI~KEGG: ajs:Ajs_4181 TraB pilus assembly family protein gene gene4830 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4765 Alide2_4766 Alide2_4766 Alide2_4766 13675 14424 + disulfide bond isomerase%2C DsbC/G PFAM: Disulphide bond isomerase%2C DsbC/G%2C N-terminal~KEGG: ajs:Ajs_4180 protein-disulfide isomerase gene gene4831 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4766 Alide2_4767 Alide2_4767 Alide2_4767 14421 14570 + hypothetical protein gene gene4832 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4767 Alide2_4768 Alide2_4768 Alide2_4768 14567 15217 + type IV conjugative transfer system protein TraV KEGG: ajs:Ajs_4179 membrane lipoprotein lipid attachment site~TIGRFAM: Type IV secretion system%2C TraV~PFAM: Type IV secretion system%2C TraV gene gene4833 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4768 Alide2_4769 Alide2_4769 Alide2_4769 15255 17879 + type-IV secretion system protein TraC TIGRFAM: Type-IV secretion system protein TraC~KEGG: ajs:Ajs_4178 hypothetical protein gene gene4834 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4769 Alide2_4770 Alide2_4770 Alide2_4770 17869 18297 + hypothetical protein KEGG: ajs:Ajs_4177 hypothetical protein gene gene4835 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4770 Alide2_4771 Alide2_4771 Alide2_4771 18297 18773 + Peptidase S26%2C conserved region PFAM: Peptidase S26%2C conserved region~KEGG: ajs:Ajs_4176 hypothetical protein gene gene4836 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4771 Alide2_4772 Alide2_4772 Alide2_4772 18760 19398 + type-F conjugative transfer system protein TraW TIGRFAM: Type-F conjugative transfer system protein TraW~KEGG: ajs:Ajs_4175 hypothetical protein gene gene4837 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4772 Alide2_4773 Alide2_4773 Alide2_4773 19395 20396 + TraU family protein PFAM: TraU~KEGG: ajs:Ajs_4174 TraU family protein gene gene4838 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4773 Alide2_4774 Alide2_4774 Alide2_4774 20396 21172 + type-F conjugative transfer system pilin assembly protein TrbC KEGG: ajs:Ajs_4173 hypothetical protein~TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC%2C subgroup~PFAM: Type-F conjugative transfer system pilin assembly protein TrbC gene gene4839 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4774 Alide2_4775 Alide2_4775 Alide2_4775 21169 22467 + hypothetical protein KEGG: ajs:Ajs_4172 hypothetical protein gene gene4840 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4775 Alide2_4776 Alide2_4776 Alide2_4776 22464 23708 + Mating pair stabilization TraN PFAM: Mating pair stabilisation TraN~KEGG: ajs:Ajs_4171 conjugal transfer mating pair stabilization protein TraN gene gene4841 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4776 Alide2_4777 Alide2_4777 Alide2_4777 23705 24067 + hypothetical protein KEGG: ajs:Ajs_4170 hypothetical protein gene gene4842 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4777 Alide2_4778 Alide2_4778 Alide2_4778 24072 24884 + hypothetical protein KEGG: ajs:Ajs_4169 hypothetical protein gene gene4843 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4778 Alide2_4779 Alide2_4779 Alide2_4779 24895 26301 + TraH family protein PFAM: Type IV conjugative transfer system protein TraH~KEGG: ajs:Ajs_4168 TraH family protein gene gene4844 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4779 Alide2_4780 Alide2_4780 Alide2_4780 26313 29360 + TraG domain-containing protein PFAM: TraG-like%2C N-terminal~KEGG: ajs:Ajs_4167 TraG domain-containing protein gene gene4845 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4780 Alide2_4781 Alide2_4781 Alide2_4781 29696 29950 - hypothetical protein KEGG: ajs:Ajs_4166 hypothetical protein gene gene4846 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4781 Alide2_4782 Alide2_4782 Alide2_4782 30439 31164 + peptidase M48 Ste24p PFAM: Peptidase M48~KEGG: ajs:Ajs_4164 peptidase M48%2C Ste24p gene gene4847 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4782 Alide2_4783 Alide2_4783 Alide2_4783 31172 31432 + hypothetical protein KEGG: ajs:Ajs_4163 hypothetical protein gene gene4848 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4783 Alide2_4784 Alide2_4784 Alide2_4784 31432 31851 + hypothetical protein KEGG: ajs:Ajs_4247 hypothetical protein gene gene4849 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4784 Alide2_4785 Alide2_4785 Alide2_4785 31848 32372 + hypothetical protein KEGG: ajs:Ajs_4246 hypothetical protein gene gene4850 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4785 Alide2_4786 Alide2_4786 Alide2_4786 32396 32764 + hypothetical protein KEGG: ajs:Ajs_4245 hypothetical protein gene gene4851 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4786 Alide2_4787 Alide2_4787 Alide2_4787 32890 33135 + hypothetical protein KEGG: ajs:Ajs_4244 hypothetical protein gene gene4852 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4787 Alide2_4788 Alide2_4788 Alide2_4788 33148 33375 + hypothetical protein KEGG: ajs:Ajs_4243 hypothetical protein gene gene4853 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4788 Alide2_4789 Alide2_4789 Alide2_4789 33372 34460 + filamentation induced by cAMP protein Fic PFAM: Filamentation induced by cAMP/death on curing-related~KEGG: ajs:Ajs_4242 filamentation induced by cAMP protein Fic gene gene4854 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4789 Alide2_4790 Alide2_4790 Alide2_4790 34493 34954 + hypothetical protein KEGG: ajs:Ajs_4241 hypothetical protein gene gene4855 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4790 Alide2_4791 Alide2_4791 Alide2_4791 34967 35227 + hypothetical protein KEGG: ajs:Ajs_4240 hypothetical protein gene gene4856 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4791 Alide2_4792 Alide2_4792 Alide2_4792 35245 36927 + Zeta toxin family protein PFAM: Zeta toxin~KEGG: ajs:Ajs_4239 zeta toxin family protein gene gene4857 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4792 Alide2_4793 Alide2_4793 Alide2_4793 36943 38154 + protein of unknown function DUF1173 PFAM: Protein of unknown function DUF1173~KEGG: ajs:Ajs_4238 hypothetical protein gene gene4858 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4793 Alide2_4794 Alide2_4794 Alide2_4794 38151 38675 + hypothetical protein KEGG: ajs:Ajs_4237 hypothetical protein gene gene4859 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4794 Alide2_4795 Alide2_4795 Alide2_4795 38831 39106 + histone family protein DNA-binding protein KEGG: ajs:Ajs_4236 histone family protein DNA-binding protein~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene4860 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4795 Alide2_4796 Alide2_4796 Alide2_4796 39110 40165 + OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: ajs:Ajs_4235 OmpA/MotB domain-containing protein gene gene4861 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4796 Alide2_4797 Alide2_4797 Alide2_4797 40223 40993 + hypothetical protein KEGG: azo:azo0081 hypothetical protein gene gene4862 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4797 Alide2_4798 Alide2_4798 Alide2_4798 41020 41781 + hypothetical protein KEGG: ajs:Ajs_4232 hypothetical protein gene gene4863 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4798 Alide2_4799 Alide2_4799 Alide2_4799 41778 42179 + protein of unknown function DUF1294 PFAM: Protein of unknown function DUF1294~KEGG: dac:Daci_5254 cold-shock DNA-binding domain-containing protein gene gene4864 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4799 Alide2_4800 Alide2_4800 Alide2_4800 42176 42703 + aspartyl protease-like protein KEGG: ajs:Ajs_4231 aspartyl protease-like protein gene gene4865 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4800 Alide2_4801 Alide2_4801 Alide2_4801 42700 43347 + metal dependent phosphohydrolase KEGG: ajs:Ajs_4230 metal dependent phosphohydrolase gene gene4866 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4801 Alide2_4802 Alide2_4802 Alide2_4802 44064 44336 + hypothetical protein KEGG: gsu:GSU2163 hypothetical protein gene gene4867 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4802 Alide2_4803 Alide2_4803 Alide2_4803 44346 44723 + hypothetical protein KEGG: ajs:Ajs_4227 hypothetical protein gene gene4868 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4803 Alide2_4804 Alide2_4804 Alide2_4804 44727 45713 + DNA primase catalytic core domain protein KEGG: eba:ebA4367 DNA primase~PFAM: DNA primase%2C catalytic core%2C N-terminal%3B Toprim domain%3B DNA primase%2C DnaB-helicase binding domain~SMART: Toprim domain gene gene4869 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4804 Alide2_4805 Alide2_4805 Alide2_4805 45869 46288 + hypothetical protein KEGG: ajs:Ajs_4225 hypothetical protein gene gene4870 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4805 Alide2_4806 Alide2_4806 Alide2_4806 46317 47099 + Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: ajs:Ajs_4224 cobyrinic acid a%2Cc-diamide synthase gene gene4871 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4806 Alide2_4807 Alide2_4807 Alide2_4807 47112 48404 + parB-like partition protein TIGRFAM: ParB-like partition protein~PFAM: ParB-like nuclease~KEGG: ajs:Ajs_4223 ParB-like partition proteins~SMART: ParB-like nuclease gene gene4872 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4807 Alide2_4808 Alide2_4808 Alide2_4808 48485 48865 + hypothetical protein KEGG: ajs:Ajs_4222 hypothetical protein gene gene4873 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4808 Alide2_4809 Alide2_4809 Alide2_4809 48939 49262 + addiction module killer protein KEGG: ajs:Ajs_4221 hypothetical protein~TIGRFAM: Addiction module killer protein%2C HI1419~PFAM: Protein of unknown function DUF891 gene gene4874 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4809 Alide2_4810 Alide2_4810 Alide2_4810 49259 49570 + addiction module antidote protein TIGRFAM: Addiction module antidote protein%2C HI1420~KEGG: vei:Veis_3350 putative transcriptional regulator gene gene4875 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4810 Alide2_4811 Alide2_4811 Alide2_4811 49684 50646 + Replication initiator protein A PFAM: Replication initiator protein A~KEGG: ajs:Ajs_4219 hypothetical protein gene gene4876 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4811 Alide2_4812 Alide2_4812 Alide2_4812 52151 53188 + hypothetical protein KEGG: ajs:Ajs_4218 hypothetical protein gene gene4877 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4812 Alide2_4813 Alide2_4813 Alide2_4813 53185 53685 + hypothetical protein KEGG: ajs:Ajs_4216 hypothetical protein gene gene4878 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4813 Alide2_4814 Alide2_4814 Alide2_4814 53896 54117 + hypothetical protein KEGG: ajs:Ajs_4215 hypothetical protein gene gene4879 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4814 Alide2_4815 Alide2_4815 Alide2_4815 54121 55035 + C-5 cytosine-specific DNA methylase PFAM: C-5 cytosine methyltransferase~KEGG: ajs:Ajs_4214 C-5 cytosine-specific DNA methylase gene gene4880 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4815 Alide2_4816 Alide2_4816 Alide2_4816 55058 55675 + phospholipase D/Transphosphatidylase SMART: Phospholipase D/Transphosphatidylase~KEGG: ajs:Ajs_4213 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases like enzyme gene gene4881 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4816 Alide2_4817 Alide2_4817 Alide2_4817 55816 57345 - RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: dac:Daci_0165 RND efflux system outer membrane lipoprotein~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene4882 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4817 Alide2_4818 Alide2_4818 Alide2_4818 57410 60577 - transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family KEGG: kpe:KPK_1162 RND family multidrug efflux permease protein OqxB~TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1~PFAM: Acriflavin resistance protein gene gene4883 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4818 Alide2_4819 Alide2_4819 Alide2_4819 60597 61796 - efflux transporter%2C RND family%2C MFP subunit KEGG: xac:XAC1482 RND multidrug efflux membrane fusion protein~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene4884 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4819 Alide2_4820 Alide2_4820 Alide2_4820 61938 62543 + transcriptional regulator%2C TetR family PFAM: Transcription regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: smd:Smed_3783 TetR family transcriptional regulator gene gene4885 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4820 Alide2_4821 Alide2_4821 Alide2_4821 62613 63308 + hypothetical protein KEGG: ajs:Ajs_4212 hypothetical protein gene gene4886 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4821 Alide2_4822 Alide2_4822 Alide2_4822 64078 64518 + single-strand binding protein KEGG: ajs:Ajs_4211 single-strand binding protein~TIGRFAM: Single-strand DNA-binding~PFAM: Primosome PriB/single-strand DNA-binding gene gene4887 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4822 Alide2_4823 Alide2_4823 Alide2_4823 64521 64700 + hypothetical protein gene gene4888 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4823 Alide2_4824 Alide2_4824 Alide2_4824 64783 65610 + protein of unknown function DUF932 PFAM: Protein of unknown function DUF932~KEGG: ajs:Ajs_4210 hypothetical protein gene gene4889 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4824 Alide2_4825 Alide2_4825 Alide2_4825 65680 65988 + hypothetical protein KEGG: ajs:Ajs_4208 hypothetical protein gene gene4890 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4825 Alide2_4826 Alide2_4826 Alide2_4826 66096 66326 + hypothetical protein KEGG: ajs:Ajs_4207 hypothetical protein gene gene4891 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4826 Alide2_4827 Alide2_4827 Alide2_4827 67366 69405 + Methyltransferase type 11 KEGG: ajs:Ajs_4206 methyltransferase type 11~manually curated~PFAM: Methyltransferase type 11 gene gene4892 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4827 Alide2_4828 Alide2_4828 Alide2_4828 69459 69926 + hypothetical protein KEGG: ajs:Ajs_4205 hypothetical protein gene gene4893 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4828 Alide2_4829 Alide2_4829 Alide2_4829 69940 70389 + hypothetical protein KEGG: ajs:Ajs_4204 hypothetical protein gene gene4894 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4829 Alide2_4830 Alide2_4830 Alide2_4830 70433 70651 + hypothetical protein KEGG: ajs:Ajs_4203 hypothetical protein gene gene4895 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4830 Alide2_4831 Alide2_4831 Alide2_4831 71211 71705 + DNA repair protein RadC KEGG: ajs:Ajs_4202 DNA repair protein RadC~TIGRFAM: Uncharacterised protein family UPF0758~PFAM: Uncharacterised protein family UPF0758 gene gene4896 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4831 Alide2_4832 Alide2_4832 Alide2_4832 71878 72207 + hypothetical protein KEGG: ajs:Ajs_4201 hypothetical protein gene gene4897 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4832 Alide2_4833 Alide2_4833 Alide2_4833 72222 72548 + hypothetical protein KEGG: ajs:Ajs_4200 hypothetical protein gene gene4898 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4833 Alide2_4834 Alide2_4834 Alide2_4834 72561 72797 + hypothetical protein KEGG: ajs:Ajs_4199 hypothetical protein gene gene4899 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4834 Alide2_4835 Alide2_4835 Alide2_4835 72805 73422 + Resolvase domain protein KEGG: ajs:Ajs_4198 resolvase domain-containing protein~PFAM: Resolvase%2C N-terminal~SMART: Resolvase%2C N-terminal gene gene4900 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4835 Alide2_4836 Alide2_4836 Alide2_4836 74058 74279 - hypothetical protein KEGG: ajs:Ajs_4197 hypothetical protein gene gene4901 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4836 Alide2_4837 Alide2_4837 Alide2_4837 74285 74875 - hypothetical protein gene gene4902 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4837 Alide2_4838 Alide2_4838 Alide2_4838 74872 75192 - hypothetical protein KEGG: ajs:Ajs_4196 hypothetical protein gene gene4903 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_4838 Alide2_R0001 Alide2_R0001 Alide2_R0001 420292 420367 + tRNA-Arg tRNA-Arg1 tRNA gene401 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0001 Alide2_R0002 Alide2_R0002 Alide2_R0002 420516 420601 + tRNA-Tyr tRNA-Tyr1 tRNA gene402 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0002 Alide2_R0003 Alide2_R0003 Alide2_R0003 420650 420723 + tRNA-Gly tRNA-Gly1 tRNA gene403 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0003 Alide2_R0004 Alide2_R0004 Alide2_R0004 420764 420838 + tRNA-Thr tRNA-Thr1 tRNA gene404 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0004 Alide2_R0005 Alide2_R0005 Alide2_R0005 422117 422192 + tRNA-Trp tRNA-Trp1 tRNA gene406 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0005 Alide2_R0006 Alide2_R0006 Alide2_R0006 440092 440167 + tRNA-Phe tRNA-Phe1 tRNA gene420 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0006 Alide2_R0007 Alide2_R0007 Alide2_R0007 904642 904717 + tRNA-Thr tRNA-Thr2 tRNA gene868 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0007 Alide2_R0008 Alide2_R0008 Alide2_R0008 928037 928113 - tRNA-Pro tRNA-Pro3 tRNA gene893 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0008 Alide2_R0009 Alide2_R0009 Alide2_R0009 988675 988751 - tRNA-Gln tRNA-Gln1 tRNA gene952 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0009 Alide2_R0010 Alide2_R0010 Alide2_R0010 1000521 1000597 + tRNA-Met tRNA-Met1 tRNA gene963 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0010 Alide2_R0011 Alide2_R0011 Alide2_R0011 1122490 1122574 + tRNA-Ser tRNA-Ser1 tRNA gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0011 Alide2_R0012 Alide2_R0012 Alide2_R0012 1134494 1134583 + tRNA-Ser tRNA-Ser2 tRNA gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0012 Alide2_R0013 Alide2_R0013 Alide2_R0013 1182800 1182979 - gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0013 Alide2_R0014 Alide2_R0014 Alide2_R0014 1225217 1225306 - tRNA-Ser tRNA-Ser5 tRNA gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0014 Alide2_R0015 Alide2_R0015 Alide2_R0015 1500507 1502023 + 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0015 Alide2_R0016 Alide2_R0016 Alide2_R0016 1502128 1502204 + tRNA-Ile tRNA-Ile1 tRNA gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0016 Alide2_R0017 Alide2_R0017 Alide2_R0017 1502235 1502310 + tRNA-Ala tRNA-Ala1 tRNA gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0017 Alide2_R0018 Alide2_R0018 Alide2_R0018 1502672 1505548 + 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0018 Alide2_R0019 Alide2_R0019 Alide2_R0019 1505665 1505777 + 5S ribosomal RNA 5S ribosomal RNA as predicted by Rfam (RF00001)%2C score 84.63 rRNA gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0019 Alide2_R0020 Alide2_R0020 Alide2_R0020 1546785 1546871 + tRNA-Leu tRNA-Leu1 tRNA gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0020 Alide2_R0021 Alide2_R0021 Alide2_R0021 1552987 1553062 + tRNA-Gly tRNA-Gly2 tRNA gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0021 Alide2_R0022 Alide2_R0022 Alide2_R0022 1553120 1553193 + tRNA-Cys tRNA-Cys1 tRNA gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0022 Alide2_R0023 Alide2_R0023 Alide2_R0023 1645555 1645630 + tRNA-Gly tRNA-Gly3 tRNA gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0023 Alide2_R0024 Alide2_R0024 Alide2_R0024 1713545 1713620 + tRNA-Val tRNA-Val1 tRNA gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0024 Alide2_R0025 Alide2_R0025 Alide2_R0025 1727592 1727676 - tRNA-Leu tRNA-Leu5 tRNA gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0025 Alide2_R0026 Alide2_R0026 Alide2_R0026 2066808 2066881 - tRNA-Gly tRNA-Gly4 tRNA gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0026 Alide2_R0027 Alide2_R0027 Alide2_R0027 2071264 2071340 + tRNA-Pro tRNA-Pro1 tRNA gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0027 Alide2_R0028 Alide2_R0028 ssrA ssrA 2086019 2086395 + tmRNA as predicted by Rfam (RF00023)%2C score 196.22 tmRNA gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0028 Alide2_R0029 Alide2_R0029 Alide2_R0029 2231627 2231711 - tRNA-Leu tRNA-Leu4 tRNA gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0029 Alide2_R0030 Alide2_R0030 Alide2_R0030 2231888 2231972 - tRNA-Leu tRNA-Leu3 tRNA gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0030 Alide2_R0031 Alide2_R0031 Alide2_R0031 2317441 2317516 + tRNA-Ala tRNA-Ala2 tRNA gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0031 Alide2_R0032 Alide2_R0032 Alide2_R0032 2416746 2416838 + tRNA-Ser tRNA-Ser3 tRNA gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0032 Alide2_R0033 Alide2_R0033 Alide2_R0033 2504108 2504182 + tRNA-Val tRNA-Val2 tRNA gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0033 Alide2_R0034 Alide2_R0034 Alide2_R0034 2504217 2504291 + tRNA-Val tRNA-Val3 tRNA gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0034 Alide2_R0035 Alide2_R0035 ffs ffs 2761151 2761252 + SRP RNA%3B RNA component of signal recognition particle gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0035 Alide2_R0036 Alide2_R0036 Alide2_R0036 2952152 2952228 - tRNA-Pro tRNA-Pro2 tRNA gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0036 Alide2_R0037 Alide2_R0037 Alide2_R0037 3066554 3066629 + tRNA-Asn tRNA-Asn1 tRNA gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0037 Alide2_R0038 Alide2_R0038 Alide2_R0038 3066682 3066757 + tRNA-Asn tRNA-Asn2 tRNA gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0038 Alide2_R0039 Alide2_R0039 Alide2_R0039 3188650 3188740 + tRNA-Ser tRNA-Ser4 tRNA gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0039 Alide2_R0040 Alide2_R0040 Alide2_R0040 3314746 3314821 - tRNA-Lys tRNA-Lys2 tRNA gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0040 Alide2_R0041 Alide2_R0041 Alide2_R0041 3378201 3378276 - tRNA-His tRNA-His1 tRNA gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0041 Alide2_R0042 Alide2_R0042 Alide2_R0042 3420810 3420886 - tRNA-Asp tRNA-Asp2 tRNA gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0042 Alide2_R0043 Alide2_R0043 Alide2_R0043 3420934 3421009 - tRNA-Glu tRNA-Glu2 tRNA gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0043 Alide2_R0044 Alide2_R0044 Alide2_R0044 3421033 3421108 - tRNA-Ala tRNA-Ala6 tRNA gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0044 Alide2_R0045 Alide2_R0045 Alide2_R0045 3549674 3549750 - tRNA-Asp tRNA-Asp1 tRNA gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0045 Alide2_R0046 Alide2_R0046 Alide2_R0046 3549798 3549873 - tRNA-Glu tRNA-Glu1 tRNA gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0046 Alide2_R0047 Alide2_R0047 Alide2_R0047 3549894 3549969 - tRNA-Ala tRNA-Ala5 tRNA gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0047 Alide2_R0048 Alide2_R0048 Alide2_R0048 3586712 3586787 + tRNA-Thr tRNA-Thr3 tRNA gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0048 Alide2_R0049 Alide2_R0049 Alide2_R0049 3632868 3632944 + tRNA-Arg tRNA-Arg2 tRNA gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0049 Alide2_R0050 Alide2_R0050 Alide2_R0050 3752446 3752522 - tRNA-Val tRNA-Val4 tRNA gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0050 Alide2_R0051 Alide2_R0051 Alide2_R0051 3792373 3792448 + tRNA-Lys tRNA-Lys1 tRNA gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0051 Alide2_R0052 Alide2_R0052 Alide2_R0052 4001418 4001494 - tRNA-Met tRNA-Met3 tRNA gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0052 Alide2_R0053 Alide2_R0053 Alide2_R0053 4074769 4074843 - tRNA-Arg tRNA-Arg4 tRNA gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0053 Alide2_R0054 Alide2_R0054 Alide2_R0054 4171785 4171861 - tRNA-Arg tRNA-Arg3 tRNA gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0054 Alide2_R0055 Alide2_R0055 Alide2_R0055 4177598 4177682 + tRNA-Leu tRNA-Leu2 tRNA gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0055 Alide2_R0056 Alide2_R0056 rnpB rnpB 4266063 4266496 - RNA component of RNaseP Bacterial RNase P class A as predicted by Rfam (RF00010)%2C score 150.26 gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0056 Alide2_R0057 Alide2_R0057 Alide2_R0057 4366822 4366934 - 5S ribosomal RNA 5S ribosomal RNA as predicted by Rfam (RF00001)%2C score 84.63 rRNA gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0057 Alide2_R0058 Alide2_R0058 Alide2_R0058 4367051 4369928 - 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0058 Alide2_R0059 Alide2_R0059 Alide2_R0059 4370290 4370365 - tRNA-Ala tRNA-Ala4 tRNA gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0059 Alide2_R0060 Alide2_R0060 Alide2_R0060 4370396 4370472 - tRNA-Ile tRNA-Ile3 tRNA gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0060 Alide2_R0061 Alide2_R0061 Alide2_R0061 4370577 4372093 - 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0061 Alide2_R0062 Alide2_R0062 Alide2_R0062 4554837 4554913 - tRNA-Met tRNA-Met2 tRNA gene4410 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0062 Alide2_R0063 Alide2_R0063 Alide2_R0063 4658053 4658165 - 5S ribosomal RNA 5S ribosomal RNA as predicted by Rfam (RF00001)%2C score 84.63 rRNA gene4511 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0063 Alide2_R0064 Alide2_R0064 Alide2_R0064 4658282 4661158 - 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene4512 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0064 Alide2_R0065 Alide2_R0065 Alide2_R0065 4661520 4661595 - tRNA-Ala tRNA-Ala3 tRNA gene4513 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0065 Alide2_R0066 Alide2_R0066 Alide2_R0066 4661626 4661702 - tRNA-Ile tRNA-Ile2 tRNA gene4514 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0066 Alide2_R0067 Alide2_R0067 Alide2_R0067 4661807 4663323 - 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene4515 http://www.ncbi.nlm.nih.gov/gene/?term=Alide2_R0067