locus-tag class description TC41_0001 PF00308 Bacterial dnaA protein TC41_0001 PF08299 Bacterial dnaA protein helix-turn-helix TC41_0001 PF11638 DnaA N-terminal domain TC41_0003 PF02768 DNA polymerase III beta subunit, C-terminal domain TC41_0003 PF02767 DNA polymerase III beta subunit, central domain TC41_0003 PF00712 DNA polymerase III beta subunit, N-terminal domain TC41_0005 PF02463 RecF/RecN/SMC N terminal domain TC41_0006 PF00986 DNA gyrase B subunit, carboxyl terminus TC41_0006 PF00204 DNA gyrase B TC41_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0006 PF01751 Toprim domain TC41_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A TC41_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller TC41_0014 PF00478 IMP dehydrogenase / GMP reductase domain TC41_0014 PF00571 CBS domain TC41_0015 PF01680 SOR/SNZ family TC41_0016 PF01174 SNO glutamine amidotransferase family TC41_0017 PF02403 Seryl-tRNA synthetase N-terminal domain TC41_0017 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TC41_0022 PF13005 zinc-finger binding domain of transposase IS66 TC41_0022 PF13007 Transposase C of IS166 homeodomain TC41_0022 PF13817 IS66 C-terminal element TC41_0022 PF03050 Transposase IS66 family TC41_0028 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TC41_0028 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TC41_0032 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TC41_0032 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TC41_0032 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TC41_0033 PF00463 Isocitrate lyase family TC41_0039 PF07282 Putative transposase DNA-binding domain TC41_0039 PF12323 Helix-turn-helix domain TC41_0039 PF01385 Probable transposase TC41_0040 PF00239 Resolvase, N terminal domain TC41_0045 PF02608 ABC transporter substrate-binding protein PnrA-like TC41_0048 PF00857 Isochorismatase family TC41_0049 PF00753 Metallo-beta-lactamase superfamily TC41_0049 PF16123 Hydroxyacylglutathione hydrolase C-terminus TC41_0050 PF03061 Thioesterase superfamily TC41_0051 PF00005 ABC transporter TC41_0051 PF08402 TOBE domain TC41_0054 PF01061 ABC-2 type transporter TC41_0055 PF00005 ABC transporter TC41_0055 PF13732 Domain of unknown function (DUF4162) TC41_0056 PF00248 Aldo/keto reductase family TC41_0057 PF00248 Aldo/keto reductase family TC41_0058 PF06719 AraC-type transcriptional regulator N-terminus TC41_0058 PF12833 Helix-turn-helix domain TC41_0059 PF00486 Transcriptional regulatory protein, C terminal TC41_0059 PF00072 Response regulator receiver domain TC41_0060 PF00512 His Kinase A (phospho-acceptor) domain TC41_0060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0060 PF16736 Single Cache-like TC41_0060 PF00989 PAS fold TC41_0062 PF01810 LysE type translocator TC41_0065 PF00356 Bacterial regulatory proteins, lacI family TC41_0066 PF04309 Glycerol-3-phosphate responsive antiterminator TC41_0068 PF13411 MerR HTH family regulatory protein TC41_0068 PF07739 TipAS antibiotic-recognition domain TC41_0069 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TC41_0070 PF01384 Phosphate transporter family TC41_0071 PF01865 Protein of unknown function DUF47 TC41_0072 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TC41_0072 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TC41_0073 PF01266 FAD dependent oxidoreductase TC41_0073 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TC41_0075 PF00392 Bacterial regulatory proteins, gntR family TC41_0075 PF07729 FCD domain TC41_0077 PF03648 Glycosyl hydrolase family 67 N-terminus TC41_0077 PF07488 Glycosyl hydrolase family 67 middle domain TC41_0077 PF07477 Glycosyl hydrolase family 67 C-terminus TC41_0079 PF00474 Sodium:solute symporter family TC41_0080 PF11755 Protein of unknown function (DUF3311) TC41_0081 PF00512 His Kinase A (phospho-acceptor) domain TC41_0081 PF00989 PAS fold TC41_0081 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0081 PF08447 PAS fold TC41_0084 PF00535 Glycosyl transferase family 2 TC41_0085 PF00625 Guanylate kinase TC41_0086 PF00989 PAS fold TC41_0086 PF00512 His Kinase A (phospho-acceptor) domain TC41_0086 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0089 PF00265 Thymidine kinase TC41_0093 PF13396 Phospholipase_D-nuclease N-terminal TC41_0093 PF13091 PLD-like domain TC41_0094 PF03009 Glycerophosphoryl diester phosphodiesterase family TC41_0096 PF00528 Binding-protein-dependent transport system inner membrane component TC41_0097 PF00528 Binding-protein-dependent transport system inner membrane component TC41_0098 PF02073 Thermophilic metalloprotease (M29) TC41_0100 PF01470 Pyroglutamyl peptidase TC41_0101 PF00440 Bacterial regulatory proteins, tetR family TC41_0101 PF17932 Tetracyclin repressor-like, C-terminal domain TC41_0103 PF13538 UvrD-like helicase C-terminal domain TC41_0104 PF00300 Histidine phosphatase superfamily (branch 1) TC41_0105 PF00342 Phosphoglucose isomerase TC41_0106 PF00480 ROK family TC41_0112 PF03176 MMPL family TC41_0115 PF03079 ARD/ARD' family TC41_0117 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain TC41_0117 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain TC41_0120 PF00596 Class II Aldolase and Adducin N-terminal domain TC41_0124 PF13537 Glutamine amidotransferase domain TC41_0124 PF00733 Asparagine synthase TC41_0126 PF14437 MafB19-like deaminase TC41_0127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0127 PF00512 His Kinase A (phospho-acceptor) domain TC41_0127 PF00989 PAS fold TC41_0129 PF12169 DNA polymerase III subunits gamma and tau domain III TC41_0130 PF02575 YbaB/EbfC DNA-binding family TC41_0131 PF02132 RecR protein TC41_0131 PF13662 Toprim domain TC41_0132 PF01741 Large-conductance mechanosensitive channel, MscL TC41_0134 PF07690 Major Facilitator Superfamily TC41_0137 PF00596 Class II Aldolase and Adducin N-terminal domain TC41_0139 PF00581 Rhodanese-like domain TC41_0139 PF00753 Metallo-beta-lactamase superfamily TC41_0142 PF00672 HAMP domain TC41_0142 PF02743 Cache domain TC41_0142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TC41_0143 PF00072 Response regulator receiver domain TC41_0145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TC41_0146 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0146 PF01584 CheW-like domain TC41_0146 PF07194 P2 response regulator binding domain TC41_0146 PF01627 Hpt domain TC41_0146 PF02895 Signal transducing histidine kinase, homodimeric domain TC41_0147 PF01584 CheW-like domain TC41_0148 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TC41_0148 PF12729 Four helix bundle sensory module for signal transduction TC41_0148 PF00672 HAMP domain TC41_0150 PF13005 zinc-finger binding domain of transposase IS66 TC41_0150 PF13007 Transposase C of IS166 homeodomain TC41_0150 PF13817 IS66 C-terminal element TC41_0150 PF03050 Transposase IS66 family TC41_0151 PF13007 Transposase C of IS166 homeodomain TC41_0151 PF13817 IS66 C-terminal element TC41_0151 PF13005 zinc-finger binding domain of transposase IS66 TC41_0151 PF03050 Transposase IS66 family TC41_0155 PF07441 SigmaK-factor processing regulatory protein BofA TC41_0156 PF01943 Polysaccharide biosynthesis protein TC41_0156 PF14667 Polysaccharide biosynthesis C-terminal domain TC41_0159 PF01276 Orn/Lys/Arg decarboxylase, major domain TC41_0159 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain TC41_0160 PF02223 Thymidylate kinase TC41_0161 PF06153 Cyclic-di-AMP receptor TC41_0162 PF09115 DNA polymerase III, delta subunit, C terminal TC41_0163 PF04468 PSP1 C-terminal conserved region TC41_0164 PF06156 Initiation control protein YabA TC41_0165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TC41_0166 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TC41_0166 PF18277 AbrB C-terminal domain TC41_0168 PF09334 tRNA synthetases class I (M) TC41_0168 PF08264 Anticodon-binding domain of tRNA TC41_0168 PF01588 Putative tRNA binding domain TC41_0169 PF01026 TatD related DNase TC41_0170 PF13331 Domain of unknown function (DUF4093) TC41_0170 PF13662 Toprim domain TC41_0171 PF00398 Ribosomal RNA adenine dimethylase TC41_0173 PF00268 Ribonucleotide reductase, small chain TC41_0179 PF00196 Bacterial regulatory proteins, luxR family TC41_0179 PF03472 Autoinducer binding domain TC41_0180 PF03949 Malic enzyme, NAD binding domain TC41_0180 PF00390 Malic enzyme, N-terminal domain TC41_0182 PF13193 AMP-binding enzyme C-terminal domain TC41_0182 PF00501 AMP-binding enzyme TC41_0183 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_0183 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_0183 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_0184 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_0184 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_0184 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_0185 PF00378 Enoyl-CoA hydratase/isomerase TC41_0187 PF00108 Thiolase, N-terminal domain TC41_0187 PF02803 Thiolase, C-terminal domain TC41_0191 PF03109 ABC1 family TC41_0193 PF00171 Aldehyde dehydrogenase family TC41_0194 PF00465 Iron-containing alcohol dehydrogenase TC41_0201 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_0201 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_0201 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_0202 PF00501 AMP-binding enzyme TC41_0202 PF13193 AMP-binding enzyme C-terminal domain TC41_0203 PF13452 N-terminal half of MaoC dehydratase TC41_0220 PF00005 ABC transporter TC41_0224 PF00872 Transposase, Mutator family TC41_0235 PF05582 YabG peptidase U57 TC41_0237 PF06257 Biofilm formation stimulator VEG TC41_0238 PF00269 Small, acid-soluble spore proteins, alpha/beta type TC41_0239 PF03575 Peptidase family S51 TC41_0241 PF00288 GHMP kinases N terminal domain TC41_0241 PF08544 GHMP kinases C terminal TC41_0242 PF00156 Phosphoribosyl transferase domain TC41_0242 PF09182 Bacterial purine repressor, N-terminal TC41_0243 PF01042 Endoribonuclease L-PSP TC41_0244 PF04026 SpoVG TC41_0245 PF00483 Nucleotidyl transferase TC41_0245 PF00132 Bacterial transferase hexapeptide (six repeats) TC41_0246 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TC41_0246 PF14572 Phosphoribosyl synthetase-associated domain TC41_0247 PF01195 Peptidyl-tRNA hydrolase TC41_0249 PF03461 TRCF domain TC41_0249 PF00270 DEAD/DEAH box helicase TC41_0249 PF02559 CarD-like/TRCF domain TC41_0249 PF17757 UvrB interaction domain TC41_0249 PF00271 Helicase conserved C-terminal domain TC41_0250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TC41_0250 PF03819 MazG nucleotide pyrophosphohydrolase domain TC41_0251 PF00216 Bacterial DNA-binding protein TC41_0252 PF01479 S4 domain TC41_0256 PF00575 S1 RNA binding domain TC41_0259 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TC41_0260 PF07228 Stage II sporulation protein E (SpoIIE) TC41_0262 PF00092 von Willebrand factor type A domain TC41_0264 PF11734 TilS substrate C-terminal domain TC41_0264 PF01171 PP-loop family TC41_0264 PF09179 TilS substrate binding domain TC41_0266 PF17862 AAA+ lid domain TC41_0266 PF00004 ATPase family associated with various cellular activities (AAA) TC41_0266 PF01434 Peptidase family M41 TC41_0266 PF06480 FtsH Extracellular TC41_0268 PF00072 Response regulator receiver domain TC41_0269 PF01430 Hsp33 protein TC41_0270 PF00809 Pterin binding enzyme TC41_0271 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TC41_0272 PF01381 Helix-turn-helix TC41_0274 PF00152 tRNA synthetases class II (D, K and N) TC41_0274 PF01336 OB-fold nucleic acid binding domain TC41_0279 PF05163 DinB family TC41_0280 PF02673 Bacitracin resistance protein BacA TC41_0281 PF07690 Major Facilitator Superfamily TC41_0282 PF00892 EamA-like transporter family TC41_0285 PF00155 Aminotransferase class I and II TC41_0286 PF00551 Formyl transferase TC41_0287 PF14765 Polyketide synthase dehydratase TC41_0287 PF00698 Acyl transferase domain TC41_0287 PF08240 Alcohol dehydrogenase GroES-like domain TC41_0287 PF00107 Zinc-binding dehydrogenase TC41_0287 PF02801 Beta-ketoacyl synthase, C-terminal domain TC41_0287 PF00109 Beta-ketoacyl synthase, N-terminal domain TC41_0287 PF08659 KR domain TC41_0287 PF00550 Phosphopantetheine attachment site TC41_0287 PF16197 Ketoacyl-synthetase C-terminal extension TC41_0288 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TC41_0288 PF02378 Phosphotransferase system, EIIC TC41_0290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TC41_0290 PF00874 PRD domain TC41_0290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TC41_0290 PF05043 Mga helix-turn-helix domain TC41_0290 PF08279 HTH domain TC41_0291 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TC41_0292 PF08125 Mannitol dehydrogenase C-terminal domain TC41_0292 PF01232 Mannitol dehydrogenase Rossmann domain TC41_0293 PF00381 PTS HPr component phosphorylation site TC41_0294 PF00391 PEP-utilising enzyme, mobile domain TC41_0294 PF05524 PEP-utilising enzyme, N-terminal TC41_0294 PF02896 PEP-utilising enzyme, TIM barrel domain TC41_0295 PF04545 Sigma-70, region 4 TC41_0295 PF04542 Sigma-70 region 2 TC41_0297 PF01425 Amidase TC41_0300 PF12323 Helix-turn-helix domain TC41_0300 PF01385 Probable transposase TC41_0300 PF07282 Putative transposase DNA-binding domain TC41_0302 PF01425 Amidase TC41_0305 PF00005 ABC transporter TC41_0306 PF00005 ABC transporter TC41_0307 PF02632 BioY family TC41_0308 PF00990 Diguanylate cyclase, GGDEF domain TC41_0308 PF03707 Bacterial signalling protein N terminal repeat TC41_0308 PF00563 EAL domain TC41_0311 PF00581 Rhodanese-like domain TC41_0313 PF07690 Major Facilitator Superfamily TC41_0316 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TC41_0317 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TC41_0322 PF01717 Cobalamin-independent synthase, Catalytic domain TC41_0323 PF07690 Major Facilitator Superfamily TC41_0324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TC41_0324 PF03466 LysR substrate binding domain TC41_0325 PF09286 Pro-kumamolisin, activation domain TC41_0325 PF00082 Subtilase family TC41_0327 PF00072 Response regulator receiver domain TC41_0327 PF00486 Transcriptional regulatory protein, C terminal TC41_0328 PF02702 Osmosensitive K+ channel His kinase sensor domain TC41_0328 PF00512 His Kinase A (phospho-acceptor) domain TC41_0328 PF13493 Domain of unknown function (DUF4118) TC41_0328 PF13492 GAF domain TC41_0328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0329 PF03814 Potassium-transporting ATPase A subunit TC41_0331 PF02669 K+-transporting ATPase, c chain TC41_0332 PF02702 Osmosensitive K+ channel His kinase sensor domain TC41_0333 PF01522 Polysaccharide deacetylase TC41_0334 PF00248 Aldo/keto reductase family TC41_0337 PF07690 Major Facilitator Superfamily TC41_0338 PF00704 Glycosyl hydrolases family 18 TC41_0338 PF01476 LysM domain TC41_0339 PF13407 Periplasmic binding protein domain TC41_0340 PF00005 ABC transporter TC41_0341 PF02653 Branched-chain amino acid transport system / permease component TC41_0345 PF00682 HMGL-like TC41_0345 PF08502 LeuA allosteric (dimerisation) domain TC41_0346 PF00255 Glutathione peroxidase TC41_0350 PF01205 Uncharacterized protein family UPF0029 TC41_0356 PF00535 Glycosyl transferase family 2 TC41_0357 PF17854 FtsK alpha domain TC41_0357 PF01580 FtsK/SpoIIIE family TC41_0357 PF09397 Ftsk gamma domain TC41_0361 PF00589 Phage integrase family TC41_0361 PF02899 Phage integrase, N-terminal SAM-like domain TC41_0367 PF17854 FtsK alpha domain TC41_0367 PF01580 FtsK/SpoIIIE family TC41_0367 PF09397 Ftsk gamma domain TC41_0374 PF13817 IS66 C-terminal element TC41_0374 PF03050 Transposase IS66 family TC41_0374 PF13005 zinc-finger binding domain of transposase IS66 TC41_0374 PF13007 Transposase C of IS166 homeodomain TC41_0375 PF00872 Transposase, Mutator family TC41_0378 PF07690 Major Facilitator Superfamily TC41_0381 PF01580 FtsK/SpoIIIE family TC41_0381 PF17854 FtsK alpha domain TC41_0381 PF09397 Ftsk gamma domain TC41_0385 PF00005 ABC transporter TC41_0386 PF12704 MacB-like periplasmic core domain TC41_0386 PF02687 FtsX-like permease family TC41_0386 PF00005 ABC transporter TC41_0388 PF00294 pfkB family carbohydrate kinase TC41_0389 PF00149 Calcineurin-like phosphoesterase TC41_0389 PF12320 Type 5 capsule protein repressor C-terminal domain TC41_0390 PF13476 AAA domain TC41_0391 PF07690 Major Facilitator Superfamily TC41_0392 PF00403 Heavy-metal-associated domain TC41_0393 PF13193 AMP-binding enzyme C-terminal domain TC41_0393 PF00501 AMP-binding enzyme TC41_0395 PF04542 Sigma-70 region 2 TC41_0395 PF08281 Sigma-70, region 4 TC41_0397 PF00174 Oxidoreductase molybdopterin binding domain TC41_0398 PF00902 Sec-independent protein translocase protein (TatC) TC41_0400 PF01225 Mur ligase family, catalytic domain TC41_0400 PF08245 Mur ligase middle domain TC41_0400 PF02875 Mur ligase family, glutamate ligase domain TC41_0401 PF00905 Penicillin binding protein transpeptidase domain TC41_0401 PF03717 Penicillin-binding Protein dimerisation domain TC41_0405 PF02261 Aspartate decarboxylase TC41_0407 PF03447 Homoserine dehydrogenase, NAD binding domain TC41_0407 PF00742 Homoserine dehydrogenase TC41_0407 PF01842 ACT domain TC41_0409 PF00437 Type II/IV secretion system protein TC41_0409 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TC41_0410 PF00482 Type II secretion system (T2SS), protein F TC41_0413 PF08334 Type II secretion system (T2SS), protein G TC41_0413 PF07963 Prokaryotic N-terminal methylation motif TC41_0422 PF00437 Type II/IV secretion system protein TC41_0423 PF12323 Helix-turn-helix domain TC41_0423 PF07282 Putative transposase DNA-binding domain TC41_0423 PF01385 Probable transposase TC41_0424 PF00239 Resolvase, N terminal domain TC41_0425 PF06750 Bacterial Peptidase A24 N-terminal domain TC41_0425 PF01478 Type IV leader peptidase family TC41_0426 PF09369 Domain of unknown function (DUF1998) TC41_0426 PF00270 DEAD/DEAH box helicase TC41_0426 PF00271 Helicase conserved C-terminal domain TC41_0428 PF00202 Aminotransferase class-III TC41_0429 PF00158 Sigma-54 interaction domain TC41_0429 PF13426 PAS domain TC41_0429 PF02954 Bacterial regulatory protein, Fis family TC41_0430 PF00171 Aldehyde dehydrogenase family TC41_0436 PF00491 Arginase family TC41_0437 PF00202 Aminotransferase class-III TC41_0438 PF00171 Aldehyde dehydrogenase family TC41_0439 PF13426 PAS domain TC41_0439 PF02954 Bacterial regulatory protein, Fis family TC41_0439 PF00158 Sigma-54 interaction domain TC41_0441 PF00324 Amino acid permease TC41_0442 PF04963 Sigma-54 factor, core binding domain TC41_0442 PF04552 Sigma-54, DNA binding domain TC41_0442 PF00309 Sigma-54 factor, Activator interacting domain (AID) TC41_0443 PF00664 ABC transporter transmembrane region TC41_0443 PF00005 ABC transporter TC41_0444 PF00005 ABC transporter TC41_0444 PF00664 ABC transporter transmembrane region TC41_0448 PF17890 Peptidoglycan hydrolase LytB WW-like domain TC41_0448 PF01473 Putative cell wall binding repeat TC41_0448 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TC41_0448 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain TC41_0450 PF12833 Helix-turn-helix domain TC41_0450 PF02311 AraC-like ligand binding domain TC41_0452 PF00135 Carboxylesterase family TC41_0454 PF01613 Flavin reductase like domain TC41_0455 PF07690 Major Facilitator Superfamily TC41_0456 PF00392 Bacterial regulatory proteins, gntR family TC41_0457 PF01557 Fumarylacetoacetate (FAA) hydrolase family TC41_0458 PF00171 Aldehyde dehydrogenase family TC41_0460 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal TC41_0460 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal TC41_0461 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TC41_0462 PF00701 Dihydrodipicolinate synthetase family TC41_0464 PF03176 MMPL family TC41_0466 PF07301 Protein of unknown function (DUF1453) TC41_0467 PF00768 D-alanyl-D-alanine carboxypeptidase TC41_0468 PF00912 Transglycosylase TC41_0468 PF00905 Penicillin binding protein transpeptidase domain TC41_0469 PF01050 Mannose-6-phosphate isomerase TC41_0469 PF00483 Nucleotidyl transferase TC41_0471 PF01751 Toprim domain TC41_0473 PF00557 Metallopeptidase family M24 TC41_0479 PF01648 4'-phosphopantetheinyl transferase superfamily TC41_0480 PF01256 Carbohydrate kinase TC41_0480 PF03853 YjeF-related protein N-terminus TC41_0482 PF01168 Alanine racemase, N-terminal domain TC41_0482 PF00842 Alanine racemase, C-terminal domain TC41_0484 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system TC41_0485 PF05221 S-adenosyl-L-homocysteine hydrolase TC41_0485 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TC41_0489 PF07293 Protein of unknown function (DUF1450) TC41_0491 PF02769 AIR synthase related protein, C-terminal domain TC41_0491 PF00586 AIR synthase related protein, N-terminal domain TC41_0492 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TC41_0493 PF00814 Glycoprotease family TC41_0494 PF00583 Acetyltransferase (GNAT) family TC41_0495 PF00814 Glycoprotease family TC41_0497 PF16326 ABC transporter C-terminal domain TC41_0497 PF12848 ABC transporter TC41_0497 PF00005 ABC transporter TC41_0499 PF01569 PAP2 superfamily TC41_0500 PF01812 5-formyltetrahydrofolate cyclo-ligase family TC41_0502 PF00994 Probable molybdopterin binding domain TC41_0502 PF18146 Damage-inducible protein CinA KH domain TC41_0502 PF02464 Competence-damaged protein TC41_0503 PF03205 Molybdopterin guanine dinucleotide synthesis protein B TC41_0504 PF00166 Chaperonin 10 Kd subunit TC41_0505 PF00118 TCP-1/cpn60 chaperonin family TC41_0510 PF00581 Rhodanese-like domain TC41_0511 PF07730 Histidine kinase TC41_0511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0512 PF00196 Bacterial regulatory proteins, luxR family TC41_0512 PF00072 Response regulator receiver domain TC41_0514 PF17863 AAA lid domain TC41_0514 PF07726 ATPase family associated with various cellular activities (AAA) TC41_0516 PF01841 Transglutaminase-like superfamily TC41_0516 PF13559 Domain of unknown function (DUF4129) TC41_0516 PF11992 Domain of unknown function (DUF3488) TC41_0517 PF00753 Metallo-beta-lactamase superfamily TC41_0517 PF16123 Hydroxyacylglutathione hydrolase C-terminus TC41_0519 PF00117 Glutamine amidotransferase class-I TC41_0519 PF00958 GMP synthase C terminal domain TC41_0519 PF02540 NAD synthase TC41_0520 PF10397 Adenylosuccinate lyase C-terminus TC41_0520 PF00206 Lyase TC41_0521 PF01259 SAICAR synthetase TC41_0522 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase TC41_0524 PF02769 AIR synthase related protein, C-terminal domain TC41_0524 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TC41_0524 PF00586 AIR synthase related protein, N-terminal domain TC41_0525 PF00156 Phosphoribosyl transferase domain TC41_0526 PF00586 AIR synthase related protein, N-terminal domain TC41_0526 PF02769 AIR synthase related protein, C-terminal domain TC41_0527 PF02142 MGS-like domain TC41_0527 PF01808 AICARFT/IMPCHase bienzyme TC41_0528 PF02844 Phosphoribosylglycinamide synthetase, N domain TC41_0528 PF02843 Phosphoribosylglycinamide synthetase, C domain TC41_0528 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TC41_0533 PF00005 ABC transporter TC41_0534 PF02687 FtsX-like permease family TC41_0534 PF18075 FtsX extracellular domain TC41_0535 PF17820 PDZ domain TC41_0536 PF01618 MotA/TolQ/ExbB proton channel family TC41_0537 PF00691 OmpA family TC41_0537 PF13677 Membrane MotB of proton-channel complex MotA/MotB TC41_0538 PF17757 UvrB interaction domain TC41_0538 PF04851 Type III restriction enzyme, res subunit TC41_0538 PF12344 Ultra-violet resistance protein B TC41_0538 PF00271 Helicase conserved C-terminal domain TC41_0538 PF02151 UvrB/uvrC motif TC41_0539 PF17760 UvrA interaction domain TC41_0539 PF17755 UvrA DNA-binding domain TC41_0539 PF00005 ABC transporter TC41_0540 PF07475 HPr Serine kinase C-terminal domain TC41_0540 PF02603 HPr Serine kinase N terminus TC41_0541 PF03485 Arginyl tRNA synthetase N terminal domain TC41_0541 PF05746 DALR anticodon binding domain TC41_0541 PF00750 tRNA synthetases class I (R) TC41_0545 PF00293 NUDIX domain TC41_0545 PF00300 Histidine phosphatase superfamily (branch 1) TC41_0546 PF03668 P-loop ATPase protein family TC41_0547 PF01933 Uncharacterised protein family UPF0052 TC41_0548 PF02650 WhiA C-terminal HTH domain TC41_0548 PF10298 WhiA N-terminal LAGLIDADG-like domain TC41_0548 PF14527 WhiA LAGLIDADG-like domain TC41_0549 PF00381 PTS HPr component phosphorylation site TC41_0553 PF14815 NUDIX domain TC41_0553 PF00730 HhH-GPD superfamily base excision DNA repair protein TC41_0553 PF00633 Helix-hairpin-helix motif TC41_0554 PF01027 Inhibitor of apoptosis-promoting Bax1 TC41_0555 PF13603 Leucyl-tRNA synthetase, Domain 2 TC41_0555 PF08264 Anticodon-binding domain of tRNA TC41_0555 PF00133 tRNA synthetases class I (I, L, M and V) TC41_0555 PF09334 tRNA synthetases class I (M) TC41_0556 PF07729 FCD domain TC41_0556 PF00392 Bacterial regulatory proteins, gntR family TC41_0559 PF01594 AI-2E family transporter TC41_0562 PF00271 Helicase conserved C-terminal domain TC41_0562 PF09369 Domain of unknown function (DUF1998) TC41_0562 PF00270 DEAD/DEAH box helicase TC41_0564 PF06335 Protein of unknown function (DUF1054) TC41_0566 PF00730 HhH-GPD superfamily base excision DNA repair protein TC41_0566 PF00633 Helix-hairpin-helix motif TC41_0566 PF10576 Iron-sulfur binding domain of endonuclease III TC41_0568 PF03323 Bacillus/Clostridium GerA spore germination protein TC41_0571 PF00465 Iron-containing alcohol dehydrogenase TC41_0572 PF00171 Aldehyde dehydrogenase family TC41_0573 PF00171 Aldehyde dehydrogenase family TC41_0574 PF07690 Major Facilitator Superfamily TC41_0575 PF02954 Bacterial regulatory protein, Fis family TC41_0575 PF13426 PAS domain TC41_0575 PF00158 Sigma-54 interaction domain TC41_0576 PF13193 AMP-binding enzyme C-terminal domain TC41_0576 PF00501 AMP-binding enzyme TC41_0577 PF00075 RNase H TC41_0578 PF08331 Domain of unknown function (DUF1730) TC41_0579 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TC41_0579 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TC41_0581 PF00180 Isocitrate/isopropylmalate dehydrogenase TC41_0582 PF09339 IclR helix-turn-helix domain TC41_0582 PF01614 Bacterial transcriptional regulator TC41_0583 PF12671 Putative amidase domain TC41_0584 PF00588 SpoU rRNA Methylase family TC41_0585 PF07992 Pyridine nucleotide-disulphide oxidoreductase TC41_0585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TC41_0586 PF00364 Biotin-requiring enzyme TC41_0586 PF02817 e3 binding domain TC41_0586 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TC41_0587 PF02780 Transketolase, C-terminal domain TC41_0587 PF02779 Transketolase, pyrimidine binding domain TC41_0588 PF00676 Dehydrogenase E1 component TC41_0590 PF00135 Carboxylesterase family TC41_0591 PF06798 PrkA serine protein kinase C-terminal domain TC41_0591 PF08298 PrkA AAA domain TC41_0592 PF04285 Protein of unknown function (DUF444) TC41_0593 PF04293 SpoVR like protein TC41_0600 PF03458 UPF0126 domain TC41_0602 PF00990 Diguanylate cyclase, GGDEF domain TC41_0602 PF00672 HAMP domain TC41_0602 PF00563 EAL domain TC41_0602 PF17154 Gammaproteobacterial periplasmic sensor domain TC41_0607 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TC41_0608 PF00873 AcrB/AcrD/AcrF family TC41_0610 PF00005 ABC transporter TC41_0612 PF00005 ABC transporter TC41_0613 PF00392 Bacterial regulatory proteins, gntR family TC41_0614 PF12706 Beta-lactamase superfamily domain TC41_0614 PF00753 Metallo-beta-lactamase superfamily TC41_0615 PF07690 Major Facilitator Superfamily TC41_0616 PF01047 MarR family TC41_0617 PF00999 Sodium/hydrogen exchanger family TC41_0617 PF03471 Transporter associated domain TC41_0617 PF02080 TrkA-C domain TC41_0619 PF00005 ABC transporter TC41_0622 PF07730 Histidine kinase TC41_0622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0623 PF00072 Response regulator receiver domain TC41_0623 PF00196 Bacterial regulatory proteins, luxR family TC41_0626 PF02790 Cytochrome C oxidase subunit II, transmembrane domain TC41_0627 PF00115 Cytochrome C and Quinol oxidase polypeptide I TC41_0628 PF00510 Cytochrome c oxidase subunit III TC41_0629 PF03626 Prokaryotic Cytochrome C oxidase subunit IV TC41_0630 PF02628 Cytochrome oxidase assembly protein TC41_0631 PF07943 Penicillin-binding protein 5, C-terminal domain TC41_0631 PF00768 D-alanyl-D-alanine carboxypeptidase TC41_0632 PF01596 O-methyltransferase TC41_0635 PF00248 Aldo/keto reductase family TC41_0636 PF00465 Iron-containing alcohol dehydrogenase TC41_0641 PF00486 Transcriptional regulatory protein, C terminal TC41_0641 PF00072 Response regulator receiver domain TC41_0642 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0642 PF00512 His Kinase A (phospho-acceptor) domain TC41_0642 PF18698 Histidine kinase sensor domain TC41_0642 PF00672 HAMP domain TC41_0642 PF00989 PAS fold TC41_0645 PF12323 Helix-turn-helix domain TC41_0645 PF01385 Probable transposase TC41_0645 PF07282 Putative transposase DNA-binding domain TC41_0646 PF00239 Resolvase, N terminal domain TC41_0648 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TC41_0649 PF13302 Acetyltransferase (GNAT) domain TC41_0650 PF00583 Acetyltransferase (GNAT) family TC41_0651 PF00580 UvrD/REP helicase N-terminal domain TC41_0651 PF13361 UvrD-like helicase C-terminal domain TC41_0652 PF00533 BRCA1 C Terminus (BRCT) domain TC41_0652 PF01653 NAD-dependent DNA ligase adenylation domain TC41_0652 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TC41_0652 PF03120 NAD-dependent DNA ligase OB-fold domain TC41_0652 PF12826 Helix-hairpin-helix motif TC41_0655 PF02686 Glu-tRNAGln amidotransferase C subunit TC41_0656 PF01425 Amidase TC41_0657 PF02637 GatB domain TC41_0657 PF02934 GatB/GatE catalytic domain TC41_0658 PF01938 TRAM domain TC41_0658 PF05958 tRNA (Uracil-5-)-methyltransferase TC41_0659 PF12146 Serine aminopeptidase, S33 TC41_0659 PF13026 Protein of unknown function (DUF3887) TC41_0662 PF00239 Resolvase, N terminal domain TC41_0663 PF12323 Helix-turn-helix domain TC41_0663 PF01385 Probable transposase TC41_0663 PF07282 Putative transposase DNA-binding domain TC41_0667 PF00486 Transcriptional regulatory protein, C terminal TC41_0667 PF00072 Response regulator receiver domain TC41_0670 PF00999 Sodium/hydrogen exchanger family TC41_0670 PF03471 Transporter associated domain TC41_0670 PF02080 TrkA-C domain TC41_0671 PF00210 Ferritin-like domain TC41_0672 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TC41_0672 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TC41_0673 PF00596 Class II Aldolase and Adducin N-terminal domain TC41_0677 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TC41_0677 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TC41_0678 PF00005 ABC transporter TC41_0679 PF02653 Branched-chain amino acid transport system / permease component TC41_0681 PF02952 L-fucose isomerase, C-terminal domain TC41_0681 PF07881 L-fucose isomerase, first N-terminal domain TC41_0681 PF07882 L-fucose isomerase, second N-terminal domain TC41_0682 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TC41_0682 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TC41_0684 PF00455 DeoR C terminal sensor domain TC41_0684 PF08220 DeoR-like helix-turn-helix domain TC41_0686 PF13183 4Fe-4S dicluster domain TC41_0686 PF11870 Domain of unknown function (DUF3390) TC41_0686 PF02589 LUD domain TC41_0687 PF02754 Cysteine-rich domain TC41_0689 PF04239 Protein of unknown function (DUF421) TC41_0691 PF03862 SpoVAC/SpoVAEB sporulation membrane protein TC41_0692 PF07451 Stage V sporulation protein AD (SpoVAD) TC41_0693 PF03862 SpoVAC/SpoVAEB sporulation membrane protein TC41_0694 PF01757 Acyltransferase family TC41_0700 PF00501 AMP-binding enzyme TC41_0700 PF13193 AMP-binding enzyme C-terminal domain TC41_0702 PF00083 Sugar (and other) transporter TC41_0703 PF04070 Domain of unknown function (DUF378) TC41_0704 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TC41_0704 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TC41_0705 PF05683 Fumarase C-terminus TC41_0705 PF05681 Fumarate hydratase (Fumerase) TC41_0707 PF01566 Natural resistance-associated macrophage protein TC41_0709 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TC41_0709 PF00591 Glycosyl transferase family, a/b domain TC41_0709 PF02885 Glycosyl transferase family, helical bundle domain TC41_0710 PF08439 Oligopeptidase F TC41_0710 PF01432 Peptidase family M3 TC41_0711 PF00512 His Kinase A (phospho-acceptor) domain TC41_0711 PF13426 PAS domain TC41_0711 PF13188 PAS domain TC41_0711 PF00989 PAS fold TC41_0711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_0713 PF00162 Phosphoglycerate kinase TC41_0714 PF00121 Triosephosphate isomerase TC41_0715 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TC41_0715 PF01676 Metalloenzyme superfamily TC41_0716 PF00113 Enolase, C-terminal TIM barrel domain TC41_0716 PF03952 Enolase, N-terminal domain TC41_0717 PF03840 Preprotein translocase SecG subunit TC41_0718 PF07690 Major Facilitator Superfamily TC41_0719 PF00773 RNB domain TC41_0719 PF00575 S1 RNA binding domain TC41_0719 PF08206 Ribonuclease B OB domain TC41_0719 PF17876 Cold shock domain TC41_0720 PF17876 Cold shock domain TC41_0720 PF00575 S1 RNA binding domain TC41_0720 PF08206 Ribonuclease B OB domain TC41_0720 PF00773 RNB domain TC41_0721 PF01668 SmpB protein TC41_0723 PF00171 Aldehyde dehydrogenase family TC41_0724 PF10057 Uncharacterized conserved protein (DUF2294) TC41_0726 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TC41_0726 PF00361 Proton-conducting membrane transporter TC41_0728 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) TC41_0729 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) TC41_0730 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) TC41_0732 PF00534 Glycosyl transferases group 1 TC41_0736 PF01209 ubiE/COQ5 methyltransferase family TC41_0738 PF08267 Cobalamin-independent synthase, N-terminal domain TC41_0738 PF01717 Cobalamin-independent synthase, Catalytic domain TC41_0739 PF00296 Luciferase-like monooxygenase TC41_0740 PF01613 Flavin reductase like domain TC41_0743 PF09347 Domain of unknown function (DUF1989) TC41_0744 PF02785 Biotin carboxylase C-terminal domain TC41_0744 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TC41_0744 PF00289 Biotin carboxylase, N-terminal domain TC41_0745 PF01425 Amidase TC41_0747 PF00528 Binding-protein-dependent transport system inner membrane component TC41_0748 PF00528 Binding-protein-dependent transport system inner membrane component TC41_0750 PF01547 Bacterial extracellular solute-binding protein TC41_0752 PF02743 Cache domain TC41_0752 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TC41_0752 PF00672 HAMP domain TC41_0753 PF03069 Acetamidase/Formamidase family TC41_0757 PF10502 Signal peptidase, peptidase S26 TC41_0758 PF00248 Aldo/keto reductase family TC41_0759 PF00009 Elongation factor Tu GTP binding domain TC41_0759 PF16658 Class II release factor RF3, C-terminal domain TC41_0759 PF03144 Elongation factor Tu domain 2 TC41_0765 PF01370 NAD dependent epimerase/dehydratase family TC41_0766 PF16875 Glycosyl hydrolase family 36 N-terminal domain TC41_0766 PF16874 Glycosyl hydrolase family 36 C-terminal domain TC41_0767 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TC41_0767 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TC41_0768 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TC41_0768 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TC41_0771 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TC41_0771 PF06165 Glycosyltransferase family 36 TC41_0771 PF10091 Putative glucoamylase TC41_0772 PF00083 Sugar (and other) transporter TC41_0773 PF00285 Citrate synthase, C-terminal domain TC41_0774 PF03972 MmgE/PrpD family TC41_0776 PF00291 Pyridoxal-phosphate dependent enzyme TC41_0776 PF13291 ACT domain TC41_0779 PF17871 AAA lid domain TC41_0779 PF00004 ATPase family associated with various cellular activities (AAA) TC41_0779 PF07724 AAA domain (Cdc48 subfamily) TC41_0779 PF10431 C-terminal, D2-small domain, of ClpB protein TC41_0781 PF02441 Flavoprotein TC41_0782 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TC41_0784 PF07690 Major Facilitator Superfamily TC41_0786 PF00465 Iron-containing alcohol dehydrogenase TC41_0787 PF00501 AMP-binding enzyme TC41_0787 PF13193 AMP-binding enzyme C-terminal domain TC41_0788 PF10114 Sensory domain found in PocR TC41_0788 PF12833 Helix-turn-helix domain TC41_0789 PF02540 NAD synthase TC41_0790 PF02540 NAD synthase TC41_0791 PF00731 AIR carboxylase TC41_0792 PF01969 Protein of unknown function DUF111 TC41_0793 PF01969 Protein of unknown function DUF111 TC41_0797 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TC41_0797 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TC41_0798 PF00994 Probable molybdopterin binding domain TC41_0798 PF02464 Competence-damaged protein TC41_0799 PF01969 Protein of unknown function DUF111 TC41_0801 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation TC41_0801 PF01118 Semialdehyde dehydrogenase, NAD binding domain TC41_0802 PF07836 DmpG-like communication domain TC41_0802 PF00682 HMGL-like TC41_0803 PF03824 High-affinity nickel-transport protein TC41_0804 PF17932 Tetracyclin repressor-like, C-terminal domain TC41_0804 PF00440 Bacterial regulatory proteins, tetR family TC41_0805 PF05138 Phenylacetic acid catabolic protein TC41_0808 PF01883 Iron-sulfur cluster assembly protein TC41_0809 PF14535 AMP-binding enzyme C-terminal domain TC41_0809 PF00501 AMP-binding enzyme TC41_0812 PF00171 Aldehyde dehydrogenase family TC41_0813 PF00378 Enoyl-CoA hydratase/isomerase TC41_0814 PF02803 Thiolase, C-terminal domain TC41_0814 PF00108 Thiolase, N-terminal domain TC41_0815 PF02646 RmuC family TC41_0816 PF14168 YjzC-like protein TC41_0817 PF04172 LrgB-like family TC41_0819 PF03788 LrgA family TC41_0820 PF03466 LysR substrate binding domain TC41_0820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TC41_0822 PF04299 Putative FMN-binding domain TC41_0823 PF00155 Aminotransferase class I and II TC41_0824 PF00676 Dehydrogenase E1 component TC41_0825 PF02780 Transketolase, C-terminal domain TC41_0825 PF02779 Transketolase, pyrimidine binding domain TC41_0826 PF00364 Biotin-requiring enzyme TC41_0826 PF02817 e3 binding domain TC41_0826 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TC41_0827 PF00378 Enoyl-CoA hydratase/isomerase TC41_0828 PF00892 EamA-like transporter family TC41_0832 PF00107 Zinc-binding dehydrogenase TC41_0832 PF08240 Alcohol dehydrogenase GroES-like domain TC41_0833 PF00664 ABC transporter transmembrane region TC41_0833 PF00005 ABC transporter TC41_0834 PF00005 ABC transporter TC41_0834 PF00664 ABC transporter transmembrane region TC41_0835 PF00664 ABC transporter transmembrane region TC41_0835 PF00005 ABC transporter TC41_0836 PF08240 Alcohol dehydrogenase GroES-like domain TC41_0836 PF00107 Zinc-binding dehydrogenase TC41_0837 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain TC41_0837 PF00326 Prolyl oligopeptidase family TC41_0838 PF00664 ABC transporter transmembrane region TC41_0838 PF00005 ABC transporter TC41_0839 PF00664 ABC transporter transmembrane region TC41_0839 PF00005 ABC transporter TC41_0842 PF10057 Uncharacterized conserved protein (DUF2294) TC41_0843 PF01226 Formate/nitrite transporter TC41_0844 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TC41_0844 PF01568 Molydopterin dinucleotide binding domain TC41_0844 PF00384 Molybdopterin oxidoreductase TC41_0844 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TC41_0844 PF12838 4Fe-4S dicluster domain TC41_0847 PF07992 Pyridine nucleotide-disulphide oxidoreductase TC41_0849 PF00248 Aldo/keto reductase family TC41_0851 PF00239 Resolvase, N terminal domain TC41_0853 PF07282 Putative transposase DNA-binding domain TC41_0853 PF01385 Probable transposase TC41_0853 PF12323 Helix-turn-helix domain TC41_0855 PF00682 HMGL-like TC41_0855 PF08502 LeuA allosteric (dimerisation) domain TC41_0856 PF07690 Major Facilitator Superfamily TC41_0858 PF00155 Aminotransferase class I and II TC41_0859 PF07282 Putative transposase DNA-binding domain TC41_0859 PF01385 Probable transposase TC41_0859 PF12323 Helix-turn-helix domain TC41_0860 PF00239 Resolvase, N terminal domain TC41_0866 PF13673 Acetyltransferase (GNAT) domain TC41_0866 PF13302 Acetyltransferase (GNAT) domain TC41_0866 PF00117 Glutamine amidotransferase class-I TC41_0866 PF00958 GMP synthase C terminal domain TC41_0866 PF03352 Methyladenine glycosylase TC41_0867 PF00085 Thioredoxin TC41_0868 PF01625 Peptide methionine sulfoxide reductase TC41_0869 PF00005 ABC transporter TC41_0870 PF04264 YceI-like domain TC41_0871 PF01638 HxlR-like helix-turn-helix TC41_0872 PF01979 Amidohydrolase family TC41_0873 PF14306 PUA-like domain TC41_0873 PF01747 ATP-sulfurylase TC41_0874 PF09844 Uncharacterized conserved protein (COG2071) TC41_0875 PF00749 tRNA synthetases class I (E and Q), catalytic domain TC41_0876 PF00171 Aldehyde dehydrogenase family TC41_0877 PF00248 Aldo/keto reductase family TC41_0878 PF02390 Putative methyltransferase TC41_0879 PF00857 Isochorismatase family TC41_0882 PF07690 Major Facilitator Superfamily TC41_0883 PF13538 UvrD-like helicase C-terminal domain TC41_0884 PF12833 Helix-turn-helix domain TC41_0885 PF07690 Major Facilitator Superfamily TC41_0886 PF13673 Acetyltransferase (GNAT) domain TC41_0888 PF08830 Protein of unknown function (DUF1806) TC41_0889 PF02585 GlcNAc-PI de-N-acetylase TC41_0890 PF01451 Low molecular weight phosphotyrosine protein phosphatase TC41_0893 PF00085 Thioredoxin TC41_0894 PF00583 Acetyltransferase (GNAT) family TC41_0894 PF13380 CoA binding domain TC41_0894 PF13607 Succinyl-CoA ligase like flavodoxin domain TC41_0895 PF07992 Pyridine nucleotide-disulphide oxidoreductase TC41_0897 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TC41_0897 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TC41_0897 PF02378 Phosphotransferase system, EIIC TC41_0899 PF08220 DeoR-like helix-turn-helix domain TC41_0899 PF00455 DeoR C terminal sensor domain TC41_0900 PF00294 pfkB family carbohydrate kinase TC41_0901 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TC41_0901 PF02378 Phosphotransferase system, EIIC TC41_0903 PF01425 Amidase TC41_0904 PF00892 EamA-like transporter family TC41_0905 PF00326 Prolyl oligopeptidase family TC41_0906 PF08818 Domain of unknown function (DU1801) TC41_0907 PF01022 Bacterial regulatory protein, arsR family TC41_0910 PF01053 Cys/Met metabolism PLP-dependent enzyme TC41_0912 PF00676 Dehydrogenase E1 component TC41_0913 PF02779 Transketolase, pyrimidine binding domain TC41_0913 PF02780 Transketolase, C-terminal domain TC41_0914 PF00501 AMP-binding enzyme TC41_0914 PF13193 AMP-binding enzyme C-terminal domain TC41_0915 PF01070 FMN-dependent dehydrogenase TC41_0917 PF02545 Maf-like protein TC41_0920 PF00465 Iron-containing alcohol dehydrogenase TC41_0921 PF00356 Bacterial regulatory proteins, lacI family TC41_0924 PF00528 Binding-protein-dependent transport system inner membrane component TC41_0925 PF00528 Binding-protein-dependent transport system inner membrane component TC41_0926 PF00694 Aconitase C-terminal domain TC41_0926 PF00330 Aconitase family (aconitate hydratase) TC41_0927 PF00953 Glycosyl transferase family 4 TC41_0929 PF08240 Alcohol dehydrogenase GroES-like domain TC41_0929 PF00107 Zinc-binding dehydrogenase TC41_0930 PF08240 Alcohol dehydrogenase GroES-like domain TC41_0930 PF00107 Zinc-binding dehydrogenase TC41_0931 PF04551 GcpE protein TC41_0932 PF04972 BON domain TC41_0932 PF01476 LysM domain TC41_0933 PF13393 Histidyl-tRNA synthetase TC41_0934 PF01634 ATP phosphoribosyltransferase TC41_0936 PF00475 Imidazoleglycerol-phosphate dehydratase TC41_0937 PF00117 Glutamine amidotransferase class-I TC41_0938 PF00977 Histidine biosynthesis protein TC41_0939 PF00977 Histidine biosynthesis protein TC41_0940 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TC41_0940 PF01502 Phosphoribosyl-AMP cyclohydrolase TC41_0944 PF08240 Alcohol dehydrogenase GroES-like domain TC41_0944 PF00107 Zinc-binding dehydrogenase TC41_0945 PF13520 Amino acid permease TC41_0946 PF01872 RibD C-terminal domain TC41_0946 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TC41_0947 PF00677 Lumazine binding domain TC41_0948 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TC41_0948 PF00925 GTP cyclohydrolase II TC41_0949 PF00885 6,7-dimethyl-8-ribityllumazine synthase TC41_0951 PF09819 ABC-type cobalt transport system, permease component TC41_0952 PF00005 ABC transporter TC41_0953 PF02780 Transketolase, C-terminal domain TC41_0953 PF02779 Transketolase, pyrimidine binding domain TC41_0953 PF00456 Transketolase, thiamine diphosphate binding domain TC41_0956 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TC41_0956 PF03466 LysR substrate binding domain TC41_0961 PF00106 short chain dehydrogenase TC41_0962 PF00581 Rhodanese-like domain TC41_0964 PF02585 GlcNAc-PI de-N-acetylase TC41_0965 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_0965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_0965 PF08028 Acyl-CoA dehydrogenase, C-terminal domain TC41_0967 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TC41_0969 PF00580 UvrD/REP helicase N-terminal domain TC41_0969 PF13361 UvrD-like helicase C-terminal domain TC41_0973 PF00849 RNA pseudouridylate synthase TC41_0973 PF01479 S4 domain TC41_0974 PF03631 Virulence factor BrkB TC41_0975 PF02152 Dihydroneopterin aldolase TC41_0976 PF10776 Protein of unknown function (DUF2600) TC41_0978 PF01926 50S ribosome-binding GTPase TC41_0978 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TC41_0979 PF00350 Dynamin family TC41_0980 PF13180 PDZ domain TC41_0981 PF04545 Sigma-70, region 4 TC41_0981 PF04542 Sigma-70 region 2 TC41_0982 PF09335 SNARE associated Golgi protein TC41_0985 PF04545 Sigma-70, region 4 TC41_0985 PF04542 Sigma-70 region 2 TC41_0988 PF01227 GTP cyclohydrolase I TC41_0989 PF01979 Amidohydrolase family TC41_0990 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TC41_0990 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TC41_0992 PF01180 Dihydroorotate dehydrogenase TC41_0993 PF04542 Sigma-70 region 2 TC41_0993 PF08281 Sigma-70, region 4 TC41_0996 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TC41_0996 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TC41_0997 PF01883 Iron-sulfur cluster assembly protein TC41_0998 PF00005 ABC transporter TC41_1000 PF01458 Uncharacterized protein family (UPF0051) TC41_1001 PF00266 Aminotransferase class-V TC41_1002 PF01592 NifU-like N terminal domain TC41_1003 PF01458 Uncharacterized protein family (UPF0051) TC41_1004 PF00355 Rieske [2Fe-2S] domain TC41_1005 PF02082 Transcriptional regulator TC41_1009 PF00459 Inositol monophosphatase family TC41_1010 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TC41_1010 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain TC41_1010 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TC41_1011 PF02401 LytB protein TC41_1015 PF13520 Amino acid permease TC41_1016 PF01321 Creatinase/Prolidase N-terminal domain TC41_1016 PF00557 Metallopeptidase family M24 TC41_1019 PF14034 Sporulation protein YtrH TC41_1020 PF12419 SNF2 Helicase protein TC41_1020 PF00271 Helicase conserved C-terminal domain TC41_1020 PF00176 SNF2 family N-terminal domain TC41_1025 PF14579 Helix-hairpin-helix motif TC41_1025 PF07733 Bacterial DNA polymerase III alpha NTPase domain TC41_1025 PF02811 PHP domain TC41_1025 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TC41_1027 PF01569 PAP2 superfamily TC41_1030 PF01230 HIT domain TC41_1031 PF01063 Amino-transferase class IV TC41_1033 PF01261 Xylose isomerase-like TIM barrel TC41_1034 PF07690 Major Facilitator Superfamily TC41_1035 PF05193 Peptidase M16 inactive domain TC41_1036 PF05193 Peptidase M16 inactive domain TC41_1036 PF00675 Insulinase (Peptidase family M16) TC41_1037 PF12706 Beta-lactamase superfamily domain TC41_1038 PF00291 Pyridoxal-phosphate dependent enzyme TC41_1039 PF08544 GHMP kinases C terminal TC41_1039 PF00288 GHMP kinases N terminal domain TC41_1040 PF03061 Thioesterase superfamily TC41_1043 PF13276 HTH-like domain TC41_1043 PF00665 Integrase core domain TC41_1043 PF13333 Integrase core domain TC41_1045 PF13333 Integrase core domain TC41_1045 PF00665 Integrase core domain TC41_1045 PF13276 HTH-like domain TC41_1047 PF00872 Transposase, Mutator family TC41_1048 PF13007 Transposase C of IS166 homeodomain TC41_1048 PF03050 Transposase IS66 family TC41_1048 PF13817 IS66 C-terminal element TC41_1048 PF13005 zinc-finger binding domain of transposase IS66 TC41_1054 PF00665 Integrase core domain TC41_1056 PF01695 IstB-like ATP binding protein TC41_1057 PF00872 Transposase, Mutator family TC41_1061 PF07685 CobB/CobQ-like glutamine amidotransferase domain TC41_1063 PF08245 Mur ligase middle domain TC41_1063 PF08353 Domain of unknown function (DUF1727) TC41_1065 PF01098 Cell cycle protein TC41_1067 PF03009 Glycerophosphoryl diester phosphodiesterase family TC41_1068 PF01098 Cell cycle protein TC41_1069 PF00155 Aminotransferase class I and II TC41_1073 PF08741 YwhD family TC41_1074 PF01276 Orn/Lys/Arg decarboxylase, major domain TC41_1074 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain TC41_1076 PF00578 AhpC/TSA family TC41_1078 PF01521 Iron-sulphur cluster biosynthesis TC41_1079 PF01966 HD domain TC41_1080 PF09335 SNARE associated Golgi protein TC41_1081 PF08827 Domain of unknown function (DUF1805) TC41_1082 PF05343 M42 glutamyl aminopeptidase TC41_1083 PF02681 Divergent PAP2 family TC41_1084 PF00293 NUDIX domain TC41_1086 PF01476 LysM domain TC41_1086 PF06725 3D domain TC41_1091 PF07859 alpha/beta hydrolase fold TC41_1093 PF00171 Aldehyde dehydrogenase family TC41_1095 PF08141 Small acid-soluble spore protein H family TC41_1096 PF03060 Nitronate monooxygenase TC41_1097 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TC41_1097 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TC41_1098 PF00589 Phage integrase family TC41_1098 PF14659 Phage integrase, N-terminal SAM-like domain TC41_1100 PF13276 HTH-like domain TC41_1100 PF00665 Integrase core domain TC41_1100 PF13333 Integrase core domain TC41_1102 PF13276 HTH-like domain TC41_1102 PF13333 Integrase core domain TC41_1102 PF00665 Integrase core domain TC41_1104 PF00872 Transposase, Mutator family TC41_1106 PF13416 Bacterial extracellular solute-binding protein TC41_1107 PF00528 Binding-protein-dependent transport system inner membrane component TC41_1108 PF00528 Binding-protein-dependent transport system inner membrane component TC41_1110 PF00703 Glycosyl hydrolases family 2 TC41_1110 PF16353 Domain of unknown function(DUF4981) TC41_1110 PF02929 Beta galactosidase small chain TC41_1110 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TC41_1110 PF02837 Glycosyl hydrolases family 2, sugar binding domain TC41_1111 PF13333 Integrase core domain TC41_1111 PF00665 Integrase core domain TC41_1111 PF13276 HTH-like domain TC41_1114 PF13005 zinc-finger binding domain of transposase IS66 TC41_1114 PF13007 Transposase C of IS166 homeodomain TC41_1114 PF13817 IS66 C-terminal element TC41_1114 PF03050 Transposase IS66 family TC41_1115 PF13276 HTH-like domain TC41_1115 PF00665 Integrase core domain TC41_1115 PF13333 Integrase core domain TC41_1118 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_1118 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_1118 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_1119 PF00378 Enoyl-CoA hydratase/isomerase TC41_1121 PF13193 AMP-binding enzyme C-terminal domain TC41_1121 PF00501 AMP-binding enzyme TC41_1122 PF13193 AMP-binding enzyme C-terminal domain TC41_1122 PF00501 AMP-binding enzyme TC41_1124 PF00356 Bacterial regulatory proteins, lacI family TC41_1127 PF00117 Glutamine amidotransferase class-I TC41_1130 PF01118 Semialdehyde dehydrogenase, NAD binding domain TC41_1130 PF02774 Semialdehyde dehydrogenase, dimerisation domain TC41_1132 PF00696 Amino acid kinase family TC41_1133 PF00202 Aminotransferase class-III TC41_1134 PF14698 Argininosuccinate lyase C-terminal TC41_1134 PF00206 Lyase TC41_1134 PF00583 Acetyltransferase (GNAT) family TC41_1135 PF01493 GXGXG motif TC41_1135 PF01645 Conserved region in glutamate synthase TC41_1135 PF04898 Glutamate synthase central domain TC41_1135 PF00310 Glutamine amidotransferases class-II TC41_1137 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TC41_1137 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TC41_1138 PF00764 Arginosuccinate synthase TC41_1139 PF14698 Argininosuccinate lyase C-terminal TC41_1139 PF00206 Lyase TC41_1143 PF00696 Amino acid kinase family TC41_1143 PF13840 ACT domain TC41_1143 PF01842 ACT domain TC41_1144 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TC41_1144 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TC41_1144 PF01842 ACT domain TC41_1145 PF00266 Aminotransferase class-V TC41_1152 PF00271 Helicase conserved C-terminal domain TC41_1152 PF00176 SNF2 family N-terminal domain TC41_1157 PF01695 IstB-like ATP binding protein TC41_1158 PF00665 Integrase core domain TC41_1158 PF02796 Helix-turn-helix domain of resolvase TC41_1162 PF00392 Bacterial regulatory proteins, gntR family TC41_1164 PF00005 ABC transporter TC41_1168 PF00581 Rhodanese-like domain TC41_1169 PF00085 Thioredoxin TC41_1172 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TC41_1172 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TC41_1172 PF00378 Enoyl-CoA hydratase/isomerase TC41_1174 PF03358 NADPH-dependent FMN reductase TC41_1175 PF07729 FCD domain TC41_1175 PF00392 Bacterial regulatory proteins, gntR family TC41_1176 PF01184 GPR1/FUN34/yaaH family TC41_1177 PF13193 AMP-binding enzyme C-terminal domain TC41_1177 PF00501 AMP-binding enzyme TC41_1177 PF16177 Acetyl-coenzyme A synthetase N-terminus TC41_1178 PF06949 Protein of unknown function (DUF1292) TC41_1183 PF00574 Clp protease TC41_1184 PF00266 Aminotransferase class-V TC41_1185 PF02926 THUMP domain TC41_1185 PF02568 Thiamine biosynthesis protein (ThiI) TC41_1189 PF05504 Spore germination B3/ GerAC like, C-terminal TC41_1191 PF10079 Bacillithiol biosynthesis BshC TC41_1192 PF02381 MraZ protein, putative antitoxin-like TC41_1193 PF01795 MraW methylase family TC41_1196 PF03717 Penicillin-binding Protein dimerisation domain TC41_1196 PF00905 Penicillin binding protein transpeptidase domain TC41_1196 PF03793 PASTA domain TC41_1197 PF01225 Mur ligase family, catalytic domain TC41_1197 PF02875 Mur ligase family, glutamate ligase domain TC41_1197 PF08245 Mur ligase middle domain TC41_1198 PF00953 Glycosyl transferase family 4 TC41_1199 PF08245 Mur ligase middle domain TC41_1199 PF02875 Mur ligase family, glutamate ligase domain TC41_1200 PF01098 Cell cycle protein TC41_1201 PF04101 Glycosyltransferase family 28 C-terminal domain TC41_1201 PF03033 Glycosyltransferase family 28 N-terminal domain TC41_1202 PF01565 FAD binding domain TC41_1202 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TC41_1203 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TC41_1206 PF13408 Recombinase zinc beta ribbon domain TC41_1206 PF00239 Resolvase, N terminal domain TC41_1206 PF07508 Recombinase TC41_1207 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TC41_1211 PF06947 Protein of unknown function (DUF1290) TC41_1212 PF02491 SHS2 domain inserted in FTSA TC41_1213 PF00091 Tubulin/FtsZ family, GTPase domain TC41_1213 PF12327 FtsZ family, C-terminal domain TC41_1214 PF00872 Transposase, Mutator family TC41_1215 PF13276 HTH-like domain TC41_1215 PF00665 Integrase core domain TC41_1215 PF13333 Integrase core domain TC41_1217 PF03419 Sporulation factor SpoIIGA TC41_1218 PF04542 Sigma-70 region 2 TC41_1218 PF04545 Sigma-70, region 4 TC41_1219 PF04542 Sigma-70 region 2 TC41_1219 PF04539 Sigma-70 region 3 TC41_1219 PF04545 Sigma-70, region 4 TC41_1220 PF05239 PRC-barrel domain TC41_1222 PF01168 Alanine racemase, N-terminal domain TC41_1225 PF05103 DivIVA protein TC41_1228 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) TC41_1229 PF01252 Signal peptidase (SPase) II TC41_1230 PF00849 RNA pseudouridylate synthase TC41_1230 PF01479 S4 domain TC41_1231 PF00156 Phosphoribosyl transferase domain TC41_1232 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TC41_1232 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TC41_1233 PF01979 Amidohydrolase family TC41_1234 PF00117 Glutamine amidotransferase class-I TC41_1234 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TC41_1235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TC41_1235 PF02142 MGS-like domain TC41_1235 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TC41_1236 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TC41_1237 PF00156 Phosphoribosyl transferase domain TC41_1238 PF01266 FAD dependent oxidoreductase TC41_1238 PF00355 Rieske [2Fe-2S] domain TC41_1240 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TC41_1240 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TC41_1243 PF00689 Cation transporting ATPase, C-terminus TC41_1243 PF00690 Cation transporter/ATPase, N-terminus TC41_1244 PF03755 YicC-like family, N-terminal region TC41_1244 PF08340 Domain of unknown function (DUF1732) TC41_1245 PF01192 RNA polymerase Rpb6 TC41_1246 PF04127 DNA / pantothenate metabolism flavoprotein TC41_1246 PF02441 Flavoprotein TC41_1247 PF00271 Helicase conserved C-terminal domain TC41_1247 PF17764 3′ DNA-binding domain (3′BD) TC41_1247 PF18074 Primosomal protein N C-terminal domain TC41_1247 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TC41_1247 PF04851 Type III restriction enzyme, res subunit TC41_1248 PF01327 Polypeptide deformylase TC41_1249 PF02911 Formyl transferase, C-terminal domain TC41_1249 PF00551 Formyl transferase TC41_1250 PF01029 NusB family TC41_1250 PF01189 16S rRNA methyltransferase RsmB/F TC41_1251 PF04055 Radical SAM superfamily TC41_1253 PF00069 Protein kinase domain TC41_1253 PF03793 PASTA domain TC41_1255 PF16745 RsgA N-terminal domain TC41_1255 PF03193 RsgA GTPase TC41_1257 PF00830 Ribosomal L28 family TC41_1258 PF00270 DEAD/DEAH box helicase TC41_1258 PF17191 RecG wedge domain TC41_1258 PF00271 Helicase conserved C-terminal domain TC41_1259 PF00269 Small, acid-soluble spore proteins, alpha/beta type TC41_1260 PF02666 Phosphatidylserine decarboxylase TC41_1261 PF16363 GDP-mannose 4,6 dehydratase TC41_1262 PF13439 Glycosyltransferase Family 4 TC41_1262 PF00534 Glycosyl transferases group 1 TC41_1263 PF01425 Amidase TC41_1265 PF01467 Cytidylyltransferase-like TC41_1266 PF01734 Patatin-like phospholipase TC41_1268 PF01783 Ribosomal L32p protein family TC41_1269 PF03061 Thioesterase superfamily TC41_1270 PF02504 Fatty acid synthesis protein TC41_1271 PF00698 Acyl transferase domain TC41_1273 PF00550 Phosphopantetheine attachment site TC41_1274 PF00109 Beta-ketoacyl synthase, N-terminal domain TC41_1274 PF02801 Beta-ketoacyl synthase, C-terminal domain TC41_1275 PF00035 Double-stranded RNA binding motif TC41_1275 PF14622 Ribonuclease-III-like TC41_1276 PF02463 RecF/RecN/SMC N terminal domain TC41_1276 PF06470 SMC proteins Flexible Hinge Domain TC41_1277 PF02881 SRP54-type protein, helical bundle domain TC41_1277 PF00448 SRP54-type protein, GTPase domain TC41_1278 PF04297 Putative helix-turn-helix protein, YlxM / p13 like TC41_1279 PF02978 Signal peptide binding domain TC41_1279 PF02881 SRP54-type protein, helical bundle domain TC41_1279 PF00448 SRP54-type protein, GTPase domain TC41_1280 PF00886 Ribosomal protein S16 TC41_1283 PF01782 RimM N-terminal domain TC41_1283 PF05239 PRC-barrel domain TC41_1284 PF01746 tRNA (Guanine-1)-methyltransferase TC41_1287 PF04715 Anthranilate synthase component I, N terminal region TC41_1287 PF00425 chorismate binding enzyme TC41_1288 PF00849 RNA pseudouridylate synthase TC41_1288 PF01479 S4 domain TC41_1290 PF01551 Peptidase family M23 TC41_1291 PF03061 Thioesterase superfamily TC41_1297 PF01245 Ribosomal protein L19 TC41_1298 PF01926 50S ribosome-binding GTPase TC41_1299 PF01351 Ribonuclease HII TC41_1301 PF01312 FlhB HrpN YscU SpaS Family TC41_1302 PF01522 Polysaccharide deacetylase TC41_1303 PF13335 Magnesium chelatase, subunit ChlI C-terminal TC41_1303 PF01078 Magnesium chelatase, subunit ChlI TC41_1305 PF08442 ATP-grasp domain TC41_1305 PF00549 CoA-ligase TC41_1307 PF02629 CoA binding domain TC41_1307 PF00549 CoA-ligase TC41_1308 PF17782 DprA winged helix domain TC41_1308 PF02481 DNA recombination-mediator protein A TC41_1311 PF01476 LysM domain TC41_1311 PF08239 Bacterial SH3 domain TC41_1311 PF00877 NlpC/P60 family TC41_1314 PF01396 Topoisomerase DNA binding C4 zinc finger TC41_1314 PF01751 Toprim domain TC41_1314 PF01131 DNA topoisomerase TC41_1315 PF01134 Glucose inhibited division protein A TC41_1317 PF02899 Phage integrase, N-terminal SAM-like domain TC41_1317 PF00589 Phage integrase family TC41_1318 PF00227 Proteasome subunit TC41_1319 PF00227 Proteasome subunit TC41_1322 PF00460 Flagella basal body rod protein TC41_1323 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TC41_1323 PF00460 Flagella basal body rod protein TC41_1324 PF02049 Flagellar hook-basal body complex protein FliE TC41_1325 PF08345 Flagellar M-ring protein C-terminal TC41_1325 PF01514 Secretory protein of YscJ/FliF family TC41_1326 PF01706 FliG C-terminal domain TC41_1326 PF14841 FliG middle domain TC41_1326 PF14842 FliG N-terminal domain TC41_1328 PF02874 ATP synthase alpha/beta family, beta-barrel domain TC41_1328 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TC41_1328 PF18269 T3SS EscN ATPase C-terminal domain TC41_1335 PF07559 Flagellar basal body protein FlaE TC41_1335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TC41_1335 PF00460 Flagella basal body rod protein TC41_1336 PF07559 Flagellar basal body protein FlaE TC41_1336 PF00460 Flagella basal body rod protein TC41_1336 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TC41_1339 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TC41_1339 PF02154 Flagellar motor switch protein FliM TC41_1340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TC41_1340 PF04509 CheC-like family TC41_1341 PF00072 Response regulator receiver domain TC41_1342 PF04347 Flagellar biosynthesis protein, FliO TC41_1343 PF00813 FliP family TC41_1344 PF01313 Bacterial export proteins, family 3 TC41_1346 PF01312 FlhB HrpN YscU SpaS Family TC41_1347 PF00771 FHIPEP family TC41_1348 PF00448 SRP54-type protein, GTPase domain TC41_1349 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TC41_1350 PF00072 Response regulator receiver domain TC41_1350 PF01339 CheB methylesterase TC41_1351 PF07194 P2 response regulator binding domain TC41_1351 PF01627 Hpt domain TC41_1351 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_1351 PF02895 Signal transducing histidine kinase, homodimeric domain TC41_1351 PF01584 CheW-like domain TC41_1352 PF01584 CheW-like domain TC41_1353 PF04509 CheC-like family TC41_1354 PF03975 CheD chemotactic sensory transduction TC41_1358 PF00318 Ribosomal protein S2 TC41_1360 PF00696 Amino acid kinase family TC41_1361 PF01765 Ribosome recycling factor TC41_1362 PF01255 Putative undecaprenyl diphosphate synthase TC41_1364 PF13288 DXP reductoisomerase C-terminal domain TC41_1364 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TC41_1364 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TC41_1365 PF02163 Peptidase family M50 TC41_1365 PF13180 PDZ domain TC41_1366 PF11490 DNA polymerase III polC-type N-terminus II TC41_1366 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TC41_1366 PF14579 Helix-hairpin-helix motif TC41_1366 PF02811 PHP domain TC41_1366 PF07733 Bacterial DNA polymerase III alpha NTPase domain TC41_1366 PF14480 DNA polymerase III polC-type N-terminus I TC41_1366 PF00929 Exonuclease TC41_1367 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TC41_1368 PF00800 Prephenate dehydratase TC41_1370 PF02576 RimP N-terminal domain TC41_1370 PF17384 RimP C-terminal SH3 domain TC41_1371 PF08529 NusA N-terminal domain TC41_1371 PF00575 S1 RNA binding domain TC41_1371 PF13184 NusA-like KH domain TC41_1372 PF04296 Protein of unknown function (DUF448) TC41_1373 PF04760 Translation initiation factor IF-2, N-terminal region TC41_1373 PF11987 Translation-initiation factor 2 TC41_1373 PF00009 Elongation factor Tu GTP binding domain TC41_1374 PF02033 Ribosome-binding factor A TC41_1375 PF01368 DHH family TC41_1375 PF02272 DHHA1 domain TC41_1376 PF09142 tRNA Pseudouridine synthase II, C terminal TC41_1376 PF01509 TruB family pseudouridylate synthase (N terminal domain) TC41_1376 PF16198 tRNA pseudouridylate synthase B C-terminal domain TC41_1377 PF06574 FAD synthetase TC41_1377 PF01687 Riboflavin kinase TC41_1379 PF00312 Ribosomal protein S15 TC41_1380 PF01138 3' exoribonuclease family, domain 1 TC41_1380 PF03725 3' exoribonuclease family, domain 2 TC41_1380 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TC41_1380 PF00013 KH domain TC41_1380 PF00575 S1 RNA binding domain TC41_1381 PF01522 Polysaccharide deacetylase TC41_1382 PF00675 Insulinase (Peptidase family M16) TC41_1382 PF05193 Peptidase M16 inactive domain TC41_1383 PF00692 dUTPase TC41_1384 PF16924 Dipicolinate synthase subunit A N-terminal domain TC41_1384 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TC41_1385 PF02441 Flavoprotein TC41_1386 PF02774 Semialdehyde dehydrogenase, dimerisation domain TC41_1386 PF01118 Semialdehyde dehydrogenase, NAD binding domain TC41_1387 PF00696 Amino acid kinase family TC41_1387 PF13840 ACT domain TC41_1388 PF00701 Dihydrodipicolinate synthetase family TC41_1389 PF17785 PUA-like domain TC41_1389 PF10672 S-adenosylmethionine-dependent methyltransferase TC41_1391 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_1391 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_1391 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_1392 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TC41_1392 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TC41_1393 PF00171 Aldehyde dehydrogenase family TC41_1394 PF00378 Enoyl-CoA hydratase/isomerase TC41_1395 PF13193 AMP-binding enzyme C-terminal domain TC41_1395 PF00501 AMP-binding enzyme TC41_1396 PF00108 Thiolase, N-terminal domain TC41_1396 PF02803 Thiolase, C-terminal domain TC41_1397 PF00106 short chain dehydrogenase TC41_1398 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TC41_1398 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TC41_1400 PF17770 Ribonuclease J C-terminal domain TC41_1400 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TC41_1400 PF00753 Metallo-beta-lactamase superfamily TC41_1401 PF00574 Clp protease TC41_1403 PF17854 FtsK alpha domain TC41_1403 PF01580 FtsK/SpoIIIE family TC41_1403 PF09397 Ftsk gamma domain TC41_1407 PF11868 Protein of unknown function (DUF3388) TC41_1408 PF13464 Domain of unknown function (DUF4115) TC41_1409 PF04461 Protein of unknown function (DUF520) TC41_1410 PF01066 CDP-alcohol phosphatidyltransferase TC41_1411 PF00994 Probable molybdopterin binding domain TC41_1411 PF02464 Competence-damaged protein TC41_1411 PF18146 Damage-inducible protein CinA KH domain TC41_1412 PF00270 DEAD/DEAH box helicase TC41_1412 PF00271 Helicase conserved C-terminal domain TC41_1413 PF00154 recA bacterial DNA recombination protein TC41_1414 PF02631 RecX family TC41_1415 PF01966 HD domain TC41_1415 PF00013 KH domain TC41_1415 PF12072 Domain of unknown function (DUF3552) TC41_1416 PF04232 Stage V sporulation protein S (SpoVS) TC41_1423 PF14398 YheC/D like ATP-grasp TC41_1425 PF01938 TRAM domain TC41_1425 PF04055 Radical SAM superfamily TC41_1425 PF00919 Uncharacterized protein family UPF0004 TC41_1427 PF05192 MutS domain III TC41_1427 PF05190 MutS family domain IV TC41_1427 PF00488 MutS domain V TC41_1427 PF01624 MutS domain I TC41_1427 PF05188 MutS domain II TC41_1428 PF08676 MutL C terminal dimerisation domain TC41_1428 PF01119 DNA mismatch repair protein, C-terminal domain TC41_1429 PF04445 Putative SAM-dependent methyltransferase TC41_1431 PF17209 Hfq protein TC41_1437 PF00665 Integrase core domain TC41_1437 PF02796 Helix-turn-helix domain of resolvase TC41_1439 PF01695 IstB-like ATP binding protein TC41_1442 PF13333 Integrase core domain TC41_1442 PF13276 HTH-like domain TC41_1442 PF00665 Integrase core domain TC41_1444 PF00872 Transposase, Mutator family TC41_1447 PF18324 Hypothetical protein TT1725 TC41_1447 PF00180 Isocitrate/isopropylmalate dehydrogenase TC41_1449 PF03323 Bacillus/Clostridium GerA spore germination protein TC41_1453 PF03323 Bacillus/Clostridium GerA spore germination protein TC41_1454 PF16363 GDP-mannose 4,6 dehydratase TC41_1455 PF01943 Polysaccharide biosynthesis protein TC41_1455 PF14667 Polysaccharide biosynthesis C-terminal domain TC41_1458 PF00004 ATPase family associated with various cellular activities (AAA) TC41_1458 PF17866 AAA lid domain TC41_1462 PF01926 50S ribosome-binding GTPase TC41_1462 PF16360 GTP-binding GTPase Middle Region TC41_1462 PF13167 GTP-binding GTPase N-terminal TC41_1463 PF06838 Methionine gamma-lyase TC41_1464 PF13411 MerR HTH family regulatory protein TC41_1465 PF00120 Glutamine synthetase, catalytic domain TC41_1465 PF03951 Glutamine synthetase, beta-Grasp domain TC41_1467 PF00392 Bacterial regulatory proteins, gntR family TC41_1468 PF08666 SAF domain TC41_1468 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus TC41_1469 PF04962 KduI/IolB family TC41_1470 PF01232 Mannitol dehydrogenase Rossmann domain TC41_1470 PF08125 Mannitol dehydrogenase C-terminal domain TC41_1471 PF00083 Sugar (and other) transporter TC41_1472 PF01726 LexA DNA binding domain TC41_1472 PF00717 Peptidase S24-like TC41_1474 PF03129 Anticodon binding domain TC41_1474 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TC41_1476 PF02574 Homocysteine S-methyltransferase TC41_1476 PF02219 Methylenetetrahydrofolate reductase TC41_1479 PF17158 Membrane-associated sensor, integral membrane domain TC41_1479 PF00990 Diguanylate cyclase, GGDEF domain TC41_1484 PF01012 Electron transfer flavoprotein domain TC41_1484 PF00766 Electron transfer flavoprotein FAD-binding domain TC41_1485 PF01012 Electron transfer flavoprotein domain TC41_1486 PF00440 Bacterial regulatory proteins, tetR family TC41_1486 PF08359 YsiA-like protein, C-terminal region TC41_1487 PF02754 Cysteine-rich domain TC41_1487 PF13183 4Fe-4S dicluster domain TC41_1488 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TC41_1488 PF00378 Enoyl-CoA hydratase/isomerase TC41_1488 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TC41_1489 PF02803 Thiolase, C-terminal domain TC41_1489 PF00108 Thiolase, N-terminal domain TC41_1490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_1490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_1490 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_1491 PF13193 AMP-binding enzyme C-terminal domain TC41_1491 PF00501 AMP-binding enzyme TC41_1493 PF03477 ATP cone domain TC41_1493 PF02867 Ribonucleotide reductase, barrel domain TC41_1493 PF00317 Ribonucleotide reductase, all-alpha domain TC41_1494 PF00268 Ribonucleotide reductase, small chain TC41_1495 PF13520 Amino acid permease TC41_1496 PF12805 FUSC-like inner membrane protein yccS TC41_1500 PF03618 Kinase/pyrophosphorylase TC41_1501 PF01380 SIS domain TC41_1501 PF00571 CBS domain TC41_1503 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TC41_1503 PF00391 PEP-utilising enzyme, mobile domain TC41_1503 PF02896 PEP-utilising enzyme, TIM barrel domain TC41_1504 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded TC41_1506 PF03737 Aldolase/RraA TC41_1507 PF02585 GlcNAc-PI de-N-acetylase TC41_1510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TC41_1513 PF01361 Tautomerase enzyme TC41_1515 PF00682 HMGL-like TC41_1515 PF07836 DmpG-like communication domain TC41_1516 PF01118 Semialdehyde dehydrogenase, NAD binding domain TC41_1516 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation TC41_1517 PF01557 Fumarylacetoacetate (FAA) hydrolase family TC41_1518 PF00171 Aldehyde dehydrogenase family TC41_1520 PF09339 IclR helix-turn-helix domain TC41_1520 PF01614 Bacterial transcriptional regulator TC41_1521 PF01494 FAD binding domain TC41_1523 PF12804 MobA-like NTP transferase domain TC41_1524 PF00120 Glutamine synthetase, catalytic domain TC41_1524 PF03951 Glutamine synthetase, beta-Grasp domain TC41_1525 PF01931 Protein of unknown function DUF84 TC41_1526 PF13932 GidA associated domain TC41_1526 PF01134 Glucose inhibited division protein A TC41_1527 PF01566 Natural resistance-associated macrophage protein TC41_1528 PF01588 Putative tRNA binding domain TC41_1531 PF01225 Mur ligase family, catalytic domain TC41_1531 PF02875 Mur ligase family, glutamate ligase domain TC41_1531 PF08245 Mur ligase middle domain TC41_1532 PF01820 D-ala D-ala ligase N-terminus TC41_1532 PF07478 D-ala D-ala ligase C-terminus TC41_1533 PF07261 Replication initiation and membrane attachment TC41_1534 PF01336 OB-fold nucleic acid binding domain TC41_1534 PF00152 tRNA synthetases class II (D, K and N) TC41_1535 PF01434 Peptidase family M41 TC41_1535 PF17862 AAA+ lid domain TC41_1535 PF00004 ATPase family associated with various cellular activities (AAA) TC41_1538 PF14084 Protein of unknown function (DUF4264) TC41_1539 PF01975 Survival protein SurE TC41_1541 PF01979 Amidohydrolase family TC41_1542 PF01008 Initiation factor 2 subunit family TC41_1543 PF01048 Phosphorylase superfamily TC41_1546 PF02735 Ku70/Ku80 beta-barrel domain TC41_1547 PF04851 Type III restriction enzyme, res subunit TC41_1547 PF00929 Exonuclease TC41_1547 PF13307 Helicase C-terminal domain TC41_1549 PF02237 Biotin protein ligase C terminal domain TC41_1549 PF08279 HTH domain TC41_1549 PF03099 Biotin/lipoate A/B protein ligase family TC41_1550 PF01743 Poly A polymerase head domain TC41_1550 PF12627 Probable RNA and SrmB- binding site of polymerase A TC41_1550 PF13735 tRNA nucleotidyltransferase domain 2 putative TC41_1551 PF13439 Glycosyltransferase Family 4 TC41_1551 PF00534 Glycosyl transferases group 1 TC41_1552 PF05173 Dihydrodipicolinate reductase, C-terminus TC41_1552 PF01113 Dihydrodipicolinate reductase, N-terminus TC41_1553 PF03819 MazG nucleotide pyrophosphohydrolase domain TC41_1555 PF07670 Nucleoside recognition TC41_1556 PF02673 Bacitracin resistance protein BacA TC41_1558 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 TC41_1558 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) TC41_1559 PF08858 IDEAL domain TC41_1559 PF08864 UPF0302 domain TC41_1561 PF02153 Prephenate dehydrogenase TC41_1562 PF18152 DAHP synthase ferredoxin-like domain TC41_1562 PF00793 DAHP synthetase I family TC41_1563 PF00290 Tryptophan synthase alpha chain TC41_1564 PF00291 Pyridoxal-phosphate dependent enzyme TC41_1566 PF00218 Indole-3-glycerol phosphate synthase TC41_1567 PF02885 Glycosyl transferase family, helical bundle domain TC41_1567 PF00591 Glycosyl transferase family, a/b domain TC41_1568 PF07736 Chorismate mutase type I TC41_1569 PF01761 3-dehydroquinate synthase TC41_1570 PF01264 Chorismate synthase TC41_1573 PF05343 M42 glutamyl aminopeptidase TC41_1574 PF00849 RNA pseudouridylate synthase TC41_1574 PF01479 S4 domain TC41_1576 PF01476 LysM domain TC41_1576 PF00877 NlpC/P60 family TC41_1578 PF07728 AAA domain (dynein-related subfamily) TC41_1581 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TC41_1581 PF02817 e3 binding domain TC41_1581 PF00364 Biotin-requiring enzyme TC41_1582 PF00905 Penicillin binding protein transpeptidase domain TC41_1582 PF17092 Penicillin-binding protein OB-like domain TC41_1582 PF00912 Transglycosylase TC41_1585 PF03705 CheR methyltransferase, all-alpha domain TC41_1585 PF01739 CheR methyltransferase, SAM binding domain TC41_1587 PF00334 Nucleoside diphosphate kinase TC41_1588 PF00348 Polyprenyl synthetase TC41_1589 PF01209 ubiE/COQ5 methyltransferase family TC41_1591 PF02081 Tryptophan RNA-binding attenuator protein TC41_1592 PF00107 Zinc-binding dehydrogenase TC41_1592 PF08240 Alcohol dehydrogenase GroES-like domain TC41_1593 PF09547 Stage IV sporulation protein A (spore_IV_A) TC41_1594 PF01597 Glycine cleavage H-protein TC41_1595 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TC41_1595 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TC41_1596 PF02660 Glycerol-3-phosphate acyltransferase TC41_1598 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TC41_1598 PF01926 50S ribosome-binding GTPase TC41_1600 PF00575 S1 RNA binding domain TC41_1603 PF02224 Cytidylate kinase TC41_1605 PF07317 Flagellar regulator YcgR TC41_1605 PF07238 PilZ domain TC41_1607 PF07486 Cell Wall Hydrolase TC41_1607 PF01471 Putative peptidoglycan binding domain TC41_1609 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TC41_1609 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TC41_1610 PF05389 Negative regulator of genetic competence (MecA) TC41_1611 PF00356 Bacterial regulatory proteins, lacI family TC41_1615 PF00580 UvrD/REP helicase N-terminal domain TC41_1615 PF13361 UvrD-like helicase C-terminal domain TC41_1615 PF00580 UvrD/REP helicase N-terminal domain TC41_1615 PF13361 UvrD-like helicase C-terminal domain TC41_1619 PF17820 PDZ domain TC41_1619 PF13180 PDZ domain TC41_1622 PF13367 PrsW family intramembrane metalloprotease TC41_1624 PF02146 Sir2 family TC41_1626 PF00512 His Kinase A (phospho-acceptor) domain TC41_1626 PF00989 PAS fold TC41_1626 PF18698 Histidine kinase sensor domain TC41_1626 PF00672 HAMP domain TC41_1626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_1627 PF00072 Response regulator receiver domain TC41_1627 PF00486 Transcriptional regulatory protein, C terminal TC41_1629 PF00849 RNA pseudouridylate synthase TC41_1629 PF01479 S4 domain TC41_1630 PF07670 Nucleoside recognition TC41_1631 PF07670 Nucleoside recognition TC41_1632 PF09579 Sporulation protein YtfJ (Spore_YtfJ) TC41_1634 PF04079 Segregation and condensation complex subunit ScpB TC41_1635 PF02616 Segregation and condensation protein ScpA TC41_1636 PF02163 Peptidase family M50 TC41_1639 PF14097 Stage V sporulation protein AE1 TC41_1640 PF03862 SpoVAC/SpoVAEB sporulation membrane protein TC41_1641 PF07451 Stage V sporulation protein AD (SpoVAD) TC41_1642 PF03862 SpoVAC/SpoVAEB sporulation membrane protein TC41_1643 PF04539 Sigma-70 region 3 TC41_1643 PF04542 Sigma-70 region 2 TC41_1643 PF04545 Sigma-70, region 4 TC41_1644 PF13581 Histidine kinase-like ATPase domain TC41_1645 PF01740 STAS domain TC41_1647 PF07943 Penicillin-binding protein 5, C-terminal domain TC41_1647 PF00768 D-alanyl-D-alanine carboxypeptidase TC41_1648 PF01676 Metalloenzyme superfamily TC41_1649 PF00589 Phage integrase family TC41_1649 PF02899 Phage integrase, N-terminal SAM-like domain TC41_1653 PF00293 NUDIX domain TC41_1654 PF01546 Peptidase family M20/M25/M40 TC41_1654 PF07687 Peptidase dimerisation domain TC41_1655 PF03099 Biotin/lipoate A/B protein ligase family TC41_1656 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family TC41_1656 PF04055 Radical SAM superfamily TC41_1657 PF01967 MoaC family TC41_1658 PF02391 MoaE protein TC41_1659 PF01476 LysM domain TC41_1659 PF00704 Glycosyl hydrolases family 18 TC41_1663 PF07687 Peptidase dimerisation domain TC41_1663 PF01546 Peptidase family M20/M25/M40 TC41_1667 PF00072 Response regulator receiver domain TC41_1667 PF08769 Sporulation initiation factor Spo0A C terminal TC41_1668 PF05580 SpoIVB peptidase S55 TC41_1668 PF17820 PDZ domain TC41_1669 PF02463 RecF/RecN/SMC N terminal domain TC41_1670 PF01513 ATP-NAD kinase TC41_1672 PF01728 FtsJ-like methyltransferase TC41_1672 PF01479 S4 domain TC41_1674 PF00348 Polyprenyl synthetase TC41_1675 PF02609 Exonuclease VII small subunit TC41_1676 PF02601 Exonuclease VII, large subunit TC41_1676 PF13742 OB-fold nucleic acid binding domain TC41_1677 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TC41_1677 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TC41_1678 PF07992 Pyridine nucleotide-disulphide oxidoreductase TC41_1679 PF00814 Glycoprotease family TC41_1680 PF01029 NusB family TC41_1684 PF03780 Asp23 family, cell envelope-related function TC41_1685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TC41_1685 PF00289 Biotin carboxylase, N-terminal domain TC41_1685 PF02785 Biotin carboxylase C-terminal domain TC41_1687 PF00364 Biotin-requiring enzyme TC41_1691 PF09546 Stage III sporulation protein AE (spore_III_AE) TC41_1692 PF06686 Stage III sporulation protein AC/AD protein family TC41_1696 PF08207 Elongation factor P (EF-P) KOW-like domain TC41_1696 PF09285 Elongation factor P, C-terminal TC41_1696 PF01132 Elongation factor P (EF-P) OB domain TC41_1697 PF01220 Dehydroquinase class II TC41_1698 PF00300 Histidine phosphatase superfamily (branch 1) TC41_1699 PF02347 Glycine cleavage system P-protein TC41_1700 PF02347 Glycine cleavage system P-protein TC41_1701 PF08669 Glycine cleavage T-protein C-terminal barrel domain TC41_1701 PF01571 Aminomethyltransferase folate-binding domain TC41_1702 PF00271 Helicase conserved C-terminal domain TC41_1702 PF00176 SNF2 family N-terminal domain TC41_1703 PF11079 Bacterial protein YqhG of unknown function TC41_1704 PF00308 Bacterial dnaA protein TC41_1704 PF08299 Bacterial dnaA protein helix-turn-helix TC41_1705 PF01202 Shikimate kinase TC41_1707 PF18277 AbrB C-terminal domain TC41_1707 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TC41_1718 PF00437 Type II/IV secretion system protein TC41_1720 PF13614 AAA domain TC41_1722 PF00563 EAL domain TC41_1722 PF12792 CSS motif domain associated with EAL TC41_1741 PF00072 Response regulator receiver domain TC41_1742 PF03707 Bacterial signalling protein N terminal repeat TC41_1742 PF00990 Diguanylate cyclase, GGDEF domain TC41_1742 PF00563 EAL domain TC41_1749 PF04307 LexA-binding, inner membrane-associated putative hydrolase TC41_1750 PF10548 P22AR C-terminal domain TC41_1750 PF02498 BRO family, N-terminal domain TC41_1769 PF02195 ParB-like nuclease domain TC41_1778 PF17762 HTH domain found in ParB protein TC41_1778 PF02195 ParB-like nuclease domain TC41_1780 PF04542 Sigma-70 region 2 TC41_1780 PF08281 Sigma-70, region 4 TC41_1788 PF02086 D12 class N6 adenine-specific DNA methyltransferase TC41_1797 PF13005 zinc-finger binding domain of transposase IS66 TC41_1797 PF13007 Transposase C of IS166 homeodomain TC41_1797 PF13817 IS66 C-terminal element TC41_1797 PF03050 Transposase IS66 family TC41_1798 PF01022 Bacterial regulatory protein, arsR family TC41_1799 PF01545 Cation efflux family TC41_1799 PF16916 Dimerisation domain of Zinc Transporter TC41_1803 PF01695 IstB-like ATP binding protein TC41_1804 PF00665 Integrase core domain TC41_1807 PF13276 HTH-like domain TC41_1807 PF13333 Integrase core domain TC41_1807 PF00665 Integrase core domain TC41_1810 PF13520 Amino acid permease TC41_1816 PF13817 IS66 C-terminal element TC41_1816 PF03050 Transposase IS66 family TC41_1816 PF13005 zinc-finger binding domain of transposase IS66 TC41_1816 PF13007 Transposase C of IS166 homeodomain TC41_1818 PF03050 Transposase IS66 family TC41_1818 PF13005 zinc-finger binding domain of transposase IS66 TC41_1818 PF13007 Transposase C of IS166 homeodomain TC41_1818 PF13817 IS66 C-terminal element TC41_1825 PF01494 FAD binding domain TC41_1828 PF01557 Fumarylacetoacetate (FAA) hydrolase family TC41_1829 PF07883 Cupin domain TC41_1831 PF07690 Major Facilitator Superfamily TC41_1832 PF00501 AMP-binding enzyme TC41_1832 PF13193 AMP-binding enzyme C-terminal domain TC41_1833 PF02803 Thiolase, C-terminal domain TC41_1833 PF00108 Thiolase, N-terminal domain TC41_1834 PF00378 Enoyl-CoA hydratase/isomerase TC41_1835 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TC41_1835 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TC41_1837 PF13333 Integrase core domain TC41_1837 PF00665 Integrase core domain TC41_1837 PF13276 HTH-like domain TC41_1839 PF00665 Integrase core domain TC41_1839 PF13276 HTH-like domain TC41_1839 PF13333 Integrase core domain TC41_1843 PF03050 Transposase IS66 family TC41_1843 PF13005 zinc-finger binding domain of transposase IS66 TC41_1843 PF13007 Transposase C of IS166 homeodomain TC41_1843 PF13817 IS66 C-terminal element TC41_1846 PF13344 Haloacid dehalogenase-like hydrolase TC41_1846 PF00293 NUDIX domain TC41_1850 PF00929 Exonuclease TC41_1866 PF00712 DNA polymerase III beta subunit, N-terminal domain TC41_1866 PF02767 DNA polymerase III beta subunit, central domain TC41_1866 PF02768 DNA polymerase III beta subunit, C-terminal domain TC41_1889 PF01381 Helix-turn-helix TC41_1893 PF01381 Helix-turn-helix TC41_1895 PF01381 Helix-turn-helix TC41_1897 PF00589 Phage integrase family TC41_1897 PF14659 Phage integrase, N-terminal SAM-like domain TC41_1898 PF00872 Transposase, Mutator family TC41_1905 PF00437 Type II/IV secretion system protein TC41_1905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TC41_1908 PF09269 Domain of unknown function (DUF1967) TC41_1908 PF01018 GTP1/OBG TC41_1908 PF01926 50S ribosome-binding GTPase TC41_1910 PF01016 Ribosomal L27 protein TC41_1911 PF04327 Cysteine protease Prp TC41_1912 PF00829 Ribosomal prokaryotic L21 protein TC41_1913 PF02163 Peptidase family M50 TC41_1915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TC41_1916 PF03775 Septum formation inhibitor MinC, C-terminal domain TC41_1920 PF04002 RadC-like JAB domain TC41_1922 PF05506 Domain of unknown function (DUF756) TC41_1922 PF04185 Phosphoesterase family TC41_1924 PF06725 3D domain TC41_1924 PF03990 G5-linked-Ubiquitin-like domain TC41_1924 PF07501 G5 domain TC41_1925 PF01225 Mur ligase family, catalytic domain TC41_1925 PF02875 Mur ligase family, glutamate ligase domain TC41_1925 PF08245 Mur ligase middle domain TC41_1926 PF02875 Mur ligase family, glutamate ligase domain TC41_1926 PF08245 Mur ligase middle domain TC41_1927 PF08264 Anticodon-binding domain of tRNA TC41_1927 PF00133 tRNA synthetases class I (I, L, M and V) TC41_1927 PF10458 Valyl tRNA synthetase tRNA binding arm TC41_1932 PF00202 Aminotransferase class-III TC41_1934 PF00490 Delta-aminolevulinic acid dehydratase TC41_1936 PF03900 Porphobilinogen deaminase, C-terminal domain TC41_1936 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TC41_1938 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TC41_1938 PF01488 Shikimate / quinate 5-dehydrogenase TC41_1938 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TC41_1939 PF01926 50S ribosome-binding GTPase TC41_1940 PF00004 ATPase family associated with various cellular activities (AAA) TC41_1940 PF02190 ATP-dependent protease La (LON) substrate-binding domain TC41_1940 PF05362 Lon protease (S16) C-terminal proteolytic domain TC41_1941 PF05362 Lon protease (S16) C-terminal proteolytic domain TC41_1941 PF00004 ATPase family associated with various cellular activities (AAA) TC41_1942 PF06689 ClpX C4-type zinc finger TC41_1942 PF07724 AAA domain (Cdc48 subfamily) TC41_1942 PF10431 C-terminal, D2-small domain, of ClpB protein TC41_1943 PF00574 Clp protease TC41_1944 PF05697 Bacterial trigger factor protein (TF) TC41_1944 PF05698 Bacterial trigger factor protein (TF) C-terminus TC41_1944 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TC41_1945 PF01725 Ham1 family TC41_1946 PF01177 Asp/Glu/Hydantoin racemase TC41_1947 PF01047 MarR family TC41_1948 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_1948 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_1948 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_1949 PF02515 CoA-transferase family III TC41_1952 PF00196 Bacterial regulatory proteins, luxR family TC41_1953 PF00155 Aminotransferase class I and II TC41_1955 PF00392 Bacterial regulatory proteins, gntR family TC41_1955 PF07702 UTRA domain TC41_1959 PF13183 4Fe-4S dicluster domain TC41_1959 PF13085 2Fe-2S iron-sulfur cluster binding domain TC41_1960 PF00890 FAD binding domain TC41_1960 PF02910 Fumarate reductase flavoprotein C-term TC41_1961 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TC41_1962 PF01541 GIY-YIG catalytic domain TC41_1962 PF02151 UvrB/uvrC motif TC41_1962 PF08459 UvrC Helix-hairpin-helix N-terminal TC41_1964 PF00749 tRNA synthetases class I (E and Q), catalytic domain TC41_1966 PF00155 Aminotransferase class I and II TC41_1968 PF01699 Sodium/calcium exchanger protein TC41_1974 PF00535 Glycosyl transferase family 2 TC41_1976 PF01047 MarR family TC41_1980 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TC41_1981 PF13091 PLD-like domain TC41_1981 PF13396 Phospholipase_D-nuclease N-terminal TC41_1983 PF00893 Small Multidrug Resistance protein TC41_1984 PF01545 Cation efflux family TC41_1984 PF16916 Dimerisation domain of Zinc Transporter TC41_1985 PF00317 Ribonucleotide reductase, all-alpha domain TC41_1985 PF02867 Ribonucleotide reductase, barrel domain TC41_1985 PF03477 ATP cone domain TC41_1986 PF03477 ATP cone domain TC41_1987 PF13344 Haloacid dehalogenase-like hydrolase TC41_1988 PF16123 Hydroxyacylglutathione hydrolase C-terminus TC41_1988 PF00753 Metallo-beta-lactamase superfamily TC41_1990 PF00535 Glycosyl transferase family 2 TC41_1991 PF00892 EamA-like transporter family TC41_1992 PF01678 Diaminopimelate epimerase TC41_1996 PF00005 ABC transporter TC41_1996 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TC41_1997 PF00005 ABC transporter TC41_1997 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TC41_1998 PF00528 Binding-protein-dependent transport system inner membrane component TC41_1998 PF12911 N-terminal TM domain of oligopeptide transport permease C TC41_1999 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TC41_2002 PF12800 4Fe-4S binding domain TC41_2002 PF00037 4Fe-4S binding domain TC41_2003 PF00005 ABC transporter TC41_2004 PF01895 PhoU domain TC41_2006 PF01476 LysM domain TC41_2006 PF00877 NlpC/P60 family TC41_2007 PF01613 Flavin reductase like domain TC41_2008 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase TC41_2008 PF00534 Glycosyl transferases group 1 TC41_2010 PF01522 Polysaccharide deacetylase TC41_2011 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase TC41_2011 PF04101 Glycosyltransferase family 28 C-terminal domain TC41_2012 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2013 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2014 PF12849 PBP superfamily domain TC41_2016 PF12697 Alpha/beta hydrolase family TC41_2017 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TC41_2017 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TC41_2017 PF16582 Middle domain of thiamine pyrophosphate TC41_2018 PF00425 chorismate binding enzyme TC41_2020 PF00378 Enoyl-CoA hydratase/isomerase TC41_2021 PF01040 UbiA prenyltransferase family TC41_2022 PF02634 FdhD/NarQ family TC41_2023 PF07849 Protein of unknown function (DUF1641) TC41_2024 PF00384 Molybdopterin oxidoreductase TC41_2024 PF01568 Molydopterin dinucleotide binding domain TC41_2024 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TC41_2024 PF12838 4Fe-4S dicluster domain TC41_2024 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TC41_2025 PF03190 Protein of unknown function, DUF255 TC41_2026 PF03190 Protein of unknown function, DUF255 TC41_2029 PF00892 EamA-like transporter family TC41_2031 PF03070 TENA/THI-4/PQQC family TC41_2032 PF08543 Phosphomethylpyrimidine kinase TC41_2033 PF02110 Hydroxyethylthiazole kinase family TC41_2034 PF02581 Thiamine monophosphate synthase TC41_2038 PF03323 Bacillus/Clostridium GerA spore germination protein TC41_2039 PF01645 Conserved region in glutamate synthase TC41_2040 PF00005 ABC transporter TC41_2040 PF00664 ABC transporter transmembrane region TC41_2041 PF00005 ABC transporter TC41_2041 PF00664 ABC transporter transmembrane region TC41_2042 PF02322 Cytochrome bd terminal oxidase subunit II TC41_2043 PF01654 Cytochrome bd terminal oxidase subunit I TC41_2044 PF07690 Major Facilitator Superfamily TC41_2046 PF01047 MarR family TC41_2048 PF00005 ABC transporter TC41_2049 PF01032 FecCD transport family TC41_2050 PF01497 Periplasmic binding protein TC41_2053 PF01923 Cobalamin adenosyltransferase TC41_2055 PF02277 Phosphoribosyltransferase TC41_2056 PF01638 HxlR-like helix-turn-helix TC41_2057 PF01242 6-pyruvoyl tetrahydropterin synthase TC41_2058 PF04055 Radical SAM superfamily TC41_2060 PF00269 Small, acid-soluble spore proteins, alpha/beta type TC41_2061 PF02541 Ppx/GppA phosphatase family TC41_2062 PF01790 Prolipoprotein diacylglyceryl transferase TC41_2064 PF04204 Homoserine O-succinyltransferase TC41_2066 PF01384 Phosphate transporter family TC41_2067 PF02261 Aspartate decarboxylase TC41_2071 PF03323 Bacillus/Clostridium GerA spore germination protein TC41_2075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_2075 PF00989 PAS fold TC41_2075 PF00512 His Kinase A (phospho-acceptor) domain TC41_2075 PF08447 PAS fold TC41_2077 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TC41_2078 PF00512 His Kinase A (phospho-acceptor) domain TC41_2078 PF00672 HAMP domain TC41_2078 PF00989 PAS fold TC41_2078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_2078 PF18698 Histidine kinase sensor domain TC41_2079 PF00486 Transcriptional regulatory protein, C terminal TC41_2079 PF00072 Response regulator receiver domain TC41_2085 PF01784 NIF3 (NGG1p interacting factor 3) TC41_2086 PF04816 tRNA (adenine(22)-N(1))-methyltransferase TC41_2088 PF03979 Sigma-70 factor, region 1.1 TC41_2088 PF04542 Sigma-70 region 2 TC41_2088 PF04545 Sigma-70, region 4 TC41_2088 PF04539 Sigma-70 region 3 TC41_2088 PF00140 Sigma-70 factor, region 1.2 TC41_2089 PF10410 DnaB-helicase binding domain of primase TC41_2089 PF01807 CHC2 zinc finger TC41_2089 PF08275 DNA primase catalytic core, N-terminal domain TC41_2091 PF02565 Recombination protein O C terminal TC41_2091 PF11967 Recombination protein O N terminal TC41_2093 PF07650 KH domain TC41_2093 PF01926 50S ribosome-binding GTPase TC41_2095 PF02130 Uncharacterized protein family UPF0054 TC41_2096 PF01966 HD domain TC41_2096 PF07697 7TM-HD extracellular TC41_2096 PF07698 7TM receptor with intracellular HD hydrolase TC41_2097 PF02562 PhoH-like protein TC41_2100 PF09424 Yqey-like protein TC41_2101 PF01165 Ribosomal protein S21 TC41_2103 PF01791 DeoC/LacD family aldolase TC41_2104 PF00919 Uncharacterized protein family UPF0004 TC41_2104 PF01938 TRAM domain TC41_2104 PF04055 Radical SAM superfamily TC41_2105 PF04452 RNA methyltransferase TC41_2107 PF00226 DnaJ domain TC41_2107 PF00684 DnaJ central domain TC41_2107 PF01556 DnaJ C terminal domain TC41_2109 PF00012 Hsp70 protein TC41_2110 PF01025 GrpE TC41_2111 PF01628 HrcA protein C terminal domain TC41_2111 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TC41_2113 PF04055 Radical SAM superfamily TC41_2113 PF06969 HemN C-terminal domain TC41_2115 PF06421 GTP-binding protein LepA C-terminus TC41_2115 PF03144 Elongation factor Tu domain 2 TC41_2115 PF00009 Elongation factor Tu GTP binding domain TC41_2115 PF00679 Elongation factor G C-terminus TC41_2118 PF01464 Transglycosylase SLT domain TC41_2119 PF03418 Germination protease TC41_2120 PF01649 Ribosomal protein S20 TC41_2123 PF07992 Pyridine nucleotide-disulphide oxidoreductase TC41_2125 PF10531 SLBB domain TC41_2127 PF01325 Iron dependent repressor, N-terminal DNA binding domain TC41_2127 PF02742 Iron dependent repressor, metal binding and dimerisation domain TC41_2128 PF13649 Methyltransferase domain TC41_2130 PF01966 HD domain TC41_2131 PF01467 Cytidylyltransferase-like TC41_2132 PF08501 Shikimate dehydrogenase substrate binding domain TC41_2132 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TC41_2132 PF01488 Shikimate / quinate 5-dehydrogenase TC41_2135 PF04545 Sigma-70, region 4 TC41_2135 PF04542 Sigma-70 region 2 TC41_2139 PF03652 Holliday junction resolvase TC41_2140 PF06135 IreB regulatory phosphoprotein TC41_2141 PF02272 DHHA1 domain TC41_2141 PF01411 tRNA synthetases class II (A) TC41_2141 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TC41_2142 PF01594 AI-2E family transporter TC41_2144 PF00266 Aminotransferase class-V TC41_2145 PF02082 Transcriptional regulator TC41_2146 PF00004 ATPase family associated with various cellular activities (AAA) TC41_2146 PF12002 MgsA AAA+ ATPase C terminal TC41_2146 PF16193 AAA C-terminal domain TC41_2147 PF07282 Putative transposase DNA-binding domain TC41_2147 PF01385 Probable transposase TC41_2147 PF12323 Helix-turn-helix domain TC41_2150 PF01451 Low molecular weight phosphotyrosine protein phosphatase TC41_2151 PF02040 Arsenical pump membrane protein TC41_2155 PF13193 AMP-binding enzyme C-terminal domain TC41_2155 PF00501 AMP-binding enzyme TC41_2156 PF02938 GAD domain TC41_2156 PF00152 tRNA synthetases class II (D, K and N) TC41_2156 PF01336 OB-fold nucleic acid binding domain TC41_2157 PF13393 Histidyl-tRNA synthetase TC41_2157 PF03129 Anticodon binding domain TC41_2159 PF00202 Aminotransferase class-III TC41_2163 PF00005 ABC transporter TC41_2165 PF07690 Major Facilitator Superfamily TC41_2167 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2168 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2171 PF00378 Enoyl-CoA hydratase/isomerase TC41_2172 PF01039 Carboxyl transferase domain TC41_2173 PF00682 HMGL-like TC41_2174 PF00364 Biotin-requiring enzyme TC41_2175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TC41_2175 PF02785 Biotin carboxylase C-terminal domain TC41_2175 PF00289 Biotin carboxylase, N-terminal domain TC41_2176 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_2176 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_2176 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_2177 PF00501 AMP-binding enzyme TC41_2177 PF16177 Acetyl-coenzyme A synthetase N-terminus TC41_2177 PF13193 AMP-binding enzyme C-terminal domain TC41_2178 PF00108 Thiolase, N-terminal domain TC41_2178 PF02803 Thiolase, C-terminal domain TC41_2179 PF01144 Coenzyme A transferase TC41_2180 PF01144 Coenzyme A transferase TC41_2184 PF14489 QueF-like protein TC41_2185 PF01189 16S rRNA methyltransferase RsmB/F TC41_2185 PF17126 RsmF rRNA methyltransferase first C-terminal domain TC41_2185 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF TC41_2190 PF00248 Aldo/keto reductase family TC41_2191 PF02585 GlcNAc-PI de-N-acetylase TC41_2192 PF03453 MoeA N-terminal region (domain I and II) TC41_2192 PF03454 MoeA C-terminal region (domain IV) TC41_2192 PF00994 Probable molybdopterin binding domain TC41_2193 PF00483 Nucleotidyl transferase TC41_2194 PF01476 LysM domain TC41_2194 PF08239 Bacterial SH3 domain TC41_2194 PF00877 NlpC/P60 family TC41_2195 PF12705 PD-(D/E)XK nuclease superfamily TC41_2195 PF13361 UvrD-like helicase C-terminal domain TC41_2195 PF00580 UvrD/REP helicase N-terminal domain TC41_2196 PF13361 UvrD-like helicase C-terminal domain TC41_2196 PF12705 PD-(D/E)XK nuclease superfamily TC41_2197 PF07690 Major Facilitator Superfamily TC41_2198 PF01207 Dihydrouridine synthase (Dus) TC41_2203 PF00768 D-alanyl-D-alanine carboxypeptidase TC41_2203 PF07943 Penicillin-binding protein 5, C-terminal domain TC41_2204 PF18357 Diphteria toxin repressor SH3 domain TC41_2204 PF02742 Iron dependent repressor, metal binding and dimerisation domain TC41_2204 PF01325 Iron dependent repressor, N-terminal DNA binding domain TC41_2205 PF01557 Fumarylacetoacetate (FAA) hydrolase family TC41_2206 PF06491 Disulphide isomerase TC41_2207 PF01208 Uroporphyrinogen decarboxylase (URO-D) TC41_2211 PF01925 Sulfite exporter TauE/SafE TC41_2212 PF00563 EAL domain TC41_2212 PF00990 Diguanylate cyclase, GGDEF domain TC41_2212 PF08447 PAS fold TC41_2212 PF08448 PAS fold TC41_2214 PF02580 D-Tyr-tRNA(Tyr) deacylase TC41_2215 PF13291 ACT domain TC41_2215 PF04607 Region found in RelA / SpoT proteins TC41_2215 PF02824 TGS domain TC41_2216 PF00156 Phosphoribosyl transferase domain TC41_2217 PF17768 RecJ OB domain TC41_2217 PF10141 Single-strand DNA-specific exonuclease, C terminal domain TC41_2217 PF02272 DHHA1 domain TC41_2217 PF01368 DHH family TC41_2218 PF16916 Dimerisation domain of Zinc Transporter TC41_2218 PF01545 Cation efflux family TC41_2219 PF02355 Protein export membrane protein TC41_2220 PF02355 Protein export membrane protein TC41_2221 PF13797 Post-transcriptional regulator TC41_2222 PF14667 Polysaccharide biosynthesis C-terminal domain TC41_2222 PF01943 Polysaccharide biosynthesis protein TC41_2223 PF04239 Protein of unknown function (DUF421) TC41_2224 PF00990 Diguanylate cyclase, GGDEF domain TC41_2224 PF17158 Membrane-associated sensor, integral membrane domain TC41_2228 PF02547 Queuosine biosynthesis protein TC41_2231 PF04542 Sigma-70 region 2 TC41_2232 PF17864 RuvB AAA lid domain TC41_2232 PF05491 RuvB C-terminal winged helix domain TC41_2232 PF05496 Holliday junction DNA helicase RuvB P-loop domain TC41_2233 PF01330 RuvA N terminal domain TC41_2233 PF07499 RuvA, C-terminal domain TC41_2234 PF02075 Crossover junction endodeoxyribonuclease RuvC TC41_2236 PF01709 Transcriptional regulator TC41_2237 PF02540 NAD synthase TC41_2238 PF02540 NAD synthase TC41_2238 PF00795 Carbon-nitrogen hydrolase TC41_2243 PF00579 tRNA synthetases class I (W and Y) TC41_2243 PF01479 S4 domain TC41_2245 PF00905 Penicillin binding protein transpeptidase domain TC41_2245 PF00912 Transglycosylase TC41_2246 PF00488 MutS domain V TC41_2246 PF01713 Smr domain TC41_2249 PF05164 Cell division protein ZapA TC41_2250 PF03484 tRNA synthetase B5 domain TC41_2250 PF03147 Ferredoxin-fold anticodon binding domain TC41_2250 PF01588 Putative tRNA binding domain TC41_2250 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TC41_2250 PF03483 B3/4 domain TC41_2251 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TC41_2251 PF01409 tRNA synthetases class II core domain (F) TC41_2253 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TC41_2253 PF02222 ATP-grasp domain TC41_2254 PF00731 AIR carboxylase TC41_2255 PF01791 DeoC/LacD family aldolase TC41_2256 PF00365 Phosphofructokinase TC41_2257 PF00311 Phosphoenolpyruvate carboxylase TC41_2258 PF02743 Cache domain TC41_2258 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TC41_2258 PF00672 HAMP domain TC41_2260 PF00381 PTS HPr component phosphorylation site TC41_2261 PF00005 ABC transporter TC41_2261 PF17912 MalK OB fold domain TC41_2261 PF03459 TOBE domain TC41_2263 PF00390 Malic enzyme, N-terminal domain TC41_2263 PF03949 Malic enzyme, NAD binding domain TC41_2264 PF06039 Malate:quinone oxidoreductase (Mqo) TC41_2265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TC41_2265 PF02817 e3 binding domain TC41_2265 PF00364 Biotin-requiring enzyme TC41_2266 PF00676 Dehydrogenase E1 component TC41_2266 PF16870 2-oxoglutarate dehydrogenase C-terminal TC41_2266 PF02779 Transketolase, pyrimidine binding domain TC41_2266 PF16078 2-oxoglutarate dehydrogenase N-terminus TC41_2268 PF07726 ATPase family associated with various cellular activities (AAA) TC41_2268 PF17863 AAA lid domain TC41_2271 PF01238 Phosphomannose isomerase type I TC41_2272 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TC41_2272 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TC41_2274 PF00892 EamA-like transporter family TC41_2275 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TC41_2275 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TC41_2276 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TC41_2276 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TC41_2277 PF01261 Xylose isomerase-like TIM barrel TC41_2282 PF00588 SpoU rRNA Methylase family TC41_2282 PF12105 SpoU, rRNA methylase, C-terminal TC41_2283 PF13536 Putative multidrug resistance efflux transporter TC41_2284 PF00583 Acetyltransferase (GNAT) family TC41_2284 PF00814 Glycoprotease family TC41_2285 PF00561 alpha/beta hydrolase fold TC41_2287 PF00324 Amino acid permease TC41_2288 PF05067 Manganese containing catalase TC41_2289 PF12652 CotJB protein TC41_2291 PF02681 Divergent PAP2 family TC41_2292 PF00588 SpoU rRNA Methylase family TC41_2292 PF08032 RNA 2'-O ribose methyltransferase substrate binding TC41_2293 PF00453 Ribosomal protein L20 TC41_2294 PF01632 Ribosomal protein L35 TC41_2295 PF00707 Translation initiation factor IF-3, C-terminal domain TC41_2295 PF05198 Translation initiation factor IF-3, N-terminal domain TC41_2297 PF04143 Sulphur transport TC41_2298 PF13649 Methyltransferase domain TC41_2299 PF02824 TGS domain TC41_2299 PF03129 Anticodon binding domain TC41_2299 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TC41_2299 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TC41_2304 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TC41_2304 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TC41_2305 PF01261 Xylose isomerase-like TIM barrel TC41_2306 PF07690 Major Facilitator Superfamily TC41_2307 PF00149 Calcineurin-like phosphoesterase TC41_2311 PF00106 short chain dehydrogenase TC41_2313 PF00860 Permease family TC41_2322 PF00313 'Cold-shock' DNA-binding domain TC41_2325 PF00248 Aldo/keto reductase family TC41_2326 PF02040 Arsenical pump membrane protein TC41_2329 PF00474 Sodium:solute symporter family TC41_2331 PF00248 Aldo/keto reductase family TC41_2332 PF01261 Xylose isomerase-like TIM barrel TC41_2334 PF01329 Pterin 4 alpha carbinolamine dehydratase TC41_2337 PF02675 S-adenosylmethionine decarboxylase TC41_2339 PF17102 Stealth protein CR3, conserved region 3 TC41_2339 PF00534 Glycosyl transferases group 1 TC41_2339 PF17101 Stealth protein CR1, conserved region 1 TC41_2339 PF11380 Stealth protein CR2, conserved region 2 TC41_2339 PF17103 Stealth protein CR4, conserved region 4 TC41_2341 PF12704 MacB-like periplasmic core domain TC41_2341 PF02687 FtsX-like permease family TC41_2342 PF12704 MacB-like periplasmic core domain TC41_2342 PF02687 FtsX-like permease family TC41_2342 PF00005 ABC transporter TC41_2345 PF00571 CBS domain TC41_2346 PF00269 Small, acid-soluble spore proteins, alpha/beta type TC41_2347 PF00285 Citrate synthase, C-terminal domain TC41_2348 PF02659 Putative manganese efflux pump TC41_2349 PF02875 Mur ligase family, glutamate ligase domain TC41_2349 PF08245 Mur ligase middle domain TC41_2350 PF00694 Aconitase C-terminal domain TC41_2351 PF00330 Aconitase family (aconitate hydratase) TC41_2352 PF00180 Isocitrate/isopropylmalate dehydrogenase TC41_2353 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TC41_2353 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TC41_2354 PF10369 Small subunit of acetolactate synthase TC41_2354 PF01842 ACT domain TC41_2355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TC41_2355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TC41_2355 PF00205 Thiamine pyrophosphate enzyme, central domain TC41_2356 PF00920 Dehydratase family TC41_2358 PF01063 Amino-transferase class IV TC41_2359 PF00742 Homoserine dehydrogenase TC41_2359 PF03447 Homoserine dehydrogenase, NAD binding domain TC41_2359 PF01842 ACT domain TC41_2360 PF00294 pfkB family carbohydrate kinase TC41_2361 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2363 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2364 PF01547 Bacterial extracellular solute-binding protein TC41_2365 PF00356 Bacterial regulatory proteins, lacI family TC41_2368 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2369 PF10417 C-terminal domain of 1-Cys peroxiredoxin TC41_2369 PF00578 AhpC/TSA family TC41_2370 PF02082 Transcriptional regulator TC41_2371 PF02082 Transcriptional regulator TC41_2376 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin TC41_2376 PF18277 AbrB C-terminal domain TC41_2388 PF00437 Type II/IV secretion system protein TC41_2390 PF13614 AAA domain TC41_2392 PF00563 EAL domain TC41_2392 PF12792 CSS motif domain associated with EAL TC41_2396 PF00216 Bacterial DNA-binding protein TC41_2408 PF00072 Response regulator receiver domain TC41_2409 PF00563 EAL domain TC41_2409 PF00990 Diguanylate cyclase, GGDEF domain TC41_2409 PF03707 Bacterial signalling protein N terminal repeat TC41_2414 PF01385 Probable transposase TC41_2414 PF12323 Helix-turn-helix domain TC41_2414 PF07282 Putative transposase DNA-binding domain TC41_2417 PF10548 P22AR C-terminal domain TC41_2417 PF02498 BRO family, N-terminal domain TC41_2427 PF02163 Peptidase family M50 TC41_2427 PF17820 PDZ domain TC41_2429 PF13614 AAA domain TC41_2438 PF02195 ParB-like nuclease domain TC41_2442 PF00145 C-5 cytosine-specific DNA methylase TC41_2442 PF13411 MerR HTH family regulatory protein TC41_2447 PF08281 Sigma-70, region 4 TC41_2447 PF04542 Sigma-70 region 2 TC41_2457 PF02086 D12 class N6 adenine-specific DNA methyltransferase TC41_2460 PF02163 Peptidase family M50 TC41_2460 PF17820 PDZ domain TC41_2465 PF00149 Calcineurin-like phosphoesterase TC41_2469 PF08281 Sigma-70, region 4 TC41_2469 PF04542 Sigma-70 region 2 TC41_2473 PF11799 impB/mucB/samB family C-terminal domain TC41_2473 PF00817 impB/mucB/samB family TC41_2478 PF13614 AAA domain TC41_2479 PF14572 Phosphoribosyl synthetase-associated domain TC41_2479 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TC41_2480 PF00929 Exonuclease TC41_2490 PF02767 DNA polymerase III beta subunit, central domain TC41_2490 PF00712 DNA polymerase III beta subunit, N-terminal domain TC41_2490 PF02768 DNA polymerase III beta subunit, C-terminal domain TC41_2502 PF02498 BRO family, N-terminal domain TC41_2502 PF10548 P22AR C-terminal domain TC41_2515 PF01381 Helix-turn-helix TC41_2521 PF00704 Glycosyl hydrolases family 18 TC41_2521 PF01476 LysM domain TC41_2523 PF00324 Amino acid permease TC41_2530 PF00005 ABC transporter TC41_2530 PF00664 ABC transporter transmembrane region TC41_2531 PF00664 ABC transporter transmembrane region TC41_2531 PF00005 ABC transporter TC41_2534 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TC41_2535 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2536 PF12911 N-terminal TM domain of oligopeptide transport permease C TC41_2536 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2537 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TC41_2538 PF00005 ABC transporter TC41_2538 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TC41_2539 PF00005 ABC transporter TC41_2539 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TC41_2540 PF00072 Response regulator receiver domain TC41_2540 PF00486 Transcriptional regulatory protein, C terminal TC41_2541 PF00672 HAMP domain TC41_2541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_2541 PF18698 Histidine kinase sensor domain TC41_2541 PF00512 His Kinase A (phospho-acceptor) domain TC41_2543 PF18719 ArlS sensor domain TC41_2543 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_2543 PF00512 His Kinase A (phospho-acceptor) domain TC41_2544 PF00486 Transcriptional regulatory protein, C terminal TC41_2544 PF00072 Response regulator receiver domain TC41_2545 PF03466 LysR substrate binding domain TC41_2545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TC41_2546 PF00709 Adenylosuccinate synthetase TC41_2547 PF06580 Histidine kinase TC41_2547 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_2547 PF00672 HAMP domain TC41_2547 PF02743 Cache domain TC41_2548 PF00665 Integrase core domain TC41_2552 PF12833 Helix-turn-helix domain TC41_2552 PF00072 Response regulator receiver domain TC41_2553 PF13407 Periplasmic binding protein domain TC41_2555 PF02653 Branched-chain amino acid transport system / permease component TC41_2556 PF00005 ABC transporter TC41_2557 PF03372 Endonuclease/Exonuclease/phosphatase family TC41_2560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TC41_2560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TC41_2561 PF04198 Putative sugar-binding domain TC41_2562 PF00485 Phosphoribulokinase / Uridine kinase family TC41_2563 PF00664 ABC transporter transmembrane region TC41_2563 PF00005 ABC transporter TC41_2564 PF00664 ABC transporter transmembrane region TC41_2564 PF00005 ABC transporter TC41_2565 PF10114 Sensory domain found in PocR TC41_2565 PF12833 Helix-turn-helix domain TC41_2567 PF01641 SelR domain TC41_2569 PF00459 Inositol monophosphatase family TC41_2570 PF03786 D-mannonate dehydratase (UxuA) TC41_2571 PF02581 Thiamine monophosphate synthase TC41_2572 PF00294 pfkB family carbohydrate kinase TC41_2573 PF02595 Glycerate kinase family TC41_2584 PF07690 Major Facilitator Superfamily TC41_2586 PF00480 ROK family TC41_2586 PF01047 MarR family TC41_2587 PF02743 Cache domain TC41_2587 PF00672 HAMP domain TC41_2587 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TC41_2589 PF00795 Carbon-nitrogen hydrolase TC41_2590 PF00795 Carbon-nitrogen hydrolase TC41_2592 PF03069 Acetamidase/Formamidase family TC41_2595 PF01966 HD domain TC41_2595 PF00072 Response regulator receiver domain TC41_2597 PF17941 Polyphosphate kinase C-terminal domain 1 TC41_2597 PF13089 Polyphosphate kinase N-terminal domain TC41_2597 PF02503 Polyphosphate kinase middle domain TC41_2597 PF13090 Polyphosphate kinase C-terminal domain 2 TC41_2600 PF07690 Major Facilitator Superfamily TC41_2604 PF00455 DeoR C terminal sensor domain TC41_2604 PF08220 DeoR-like helix-turn-helix domain TC41_2605 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain TC41_2605 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain TC41_2606 PF10509 Galactokinase galactose-binding signature TC41_2606 PF08544 GHMP kinases C terminal TC41_2606 PF00288 GHMP kinases N terminal domain TC41_2609 PF00331 Glycosyl hydrolase family 10 TC41_2611 PF00107 Zinc-binding dehydrogenase TC41_2611 PF08240 Alcohol dehydrogenase GroES-like domain TC41_2613 PF00905 Penicillin binding protein transpeptidase domain TC41_2613 PF03717 Penicillin-binding Protein dimerisation domain TC41_2620 PF02898 Nitric oxide synthase, oxygenase domain TC41_2621 PF01145 SPFH domain / Band 7 family TC41_2623 PF02829 3H domain TC41_2623 PF08279 HTH domain TC41_2625 PF01464 Transglycosylase SLT domain TC41_2625 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain TC41_2626 PF01121 Dephospho-CoA kinase TC41_2627 PF06827 Zinc finger found in FPG and IleRS TC41_2627 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TC41_2627 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TC41_2629 PF00476 DNA polymerase family A TC41_2629 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TC41_2629 PF01367 5'-3' exonuclease, C-terminal SAM fold TC41_2630 PF00800 Prephenate dehydratase TC41_2630 PF01817 Chorismate mutase type II TC41_2630 PF01842 ACT domain TC41_2631 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TC41_2631 PF00056 lactate/malate dehydrogenase, NAD binding domain TC41_2632 PF00180 Isocitrate/isopropylmalate dehydrogenase TC41_2634 PF00486 Transcriptional regulatory protein, C terminal TC41_2634 PF00072 Response regulator receiver domain TC41_2635 PF00579 tRNA synthetases class I (W and Y) TC41_2636 PF02887 Pyruvate kinase, alpha/beta domain TC41_2636 PF00224 Pyruvate kinase, barrel domain TC41_2636 PF00391 PEP-utilising enzyme, mobile domain TC41_2637 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TC41_2638 PF01039 Carboxyl transferase domain TC41_2638 PF17848 Acetyl-coA carboxylase zinc finger domain TC41_2640 PF01336 OB-fold nucleic acid binding domain TC41_2640 PF02811 PHP domain TC41_2640 PF07733 Bacterial DNA polymerase III alpha NTPase domain TC41_2640 PF14579 Helix-hairpin-helix motif TC41_2640 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TC41_2641 PF07085 DRTGG domain TC41_2641 PF03061 Thioesterase superfamily TC41_2641 PF00571 CBS domain TC41_2641 PF00392 Bacterial regulatory proteins, gntR family TC41_2647 PF00291 Pyridoxal-phosphate dependent enzyme TC41_2648 PF01316 Arginine repressor, DNA binding domain TC41_2648 PF02863 Arginine repressor, C-terminal domain TC41_2650 PF00817 impB/mucB/samB family TC41_2650 PF11799 impB/mucB/samB family C-terminal domain TC41_2650 PF11798 IMS family HHH motif TC41_2655 PF12706 Beta-lactamase superfamily domain TC41_2656 PF06133 Control of competence regulator ComK, YlbF/YmcA TC41_2657 PF01152 Bacterial-like globin TC41_2659 PF06508 Queuosine biosynthesis protein QueC TC41_2661 PF08264 Anticodon-binding domain of tRNA TC41_2661 PF00133 tRNA synthetases class I (I, L, M and V) TC41_2663 PF08386 TAP-like protein TC41_2663 PF00561 alpha/beta hydrolase fold TC41_2665 PF00132 Bacterial transferase hexapeptide (six repeats) TC41_2666 PF07687 Peptidase dimerisation domain TC41_2666 PF01546 Peptidase family M20/M25/M40 TC41_2667 PF06018 CodY GAF-like domain TC41_2667 PF08222 CodY helix-turn-helix domain TC41_2668 PF01371 Trp repressor protein TC41_2670 PF07732 Multicopper oxidase TC41_2670 PF07731 Multicopper oxidase TC41_2670 PF00394 Multicopper oxidase TC41_2673 PF08671 Anti-repressor SinI TC41_2673 PF01381 Helix-turn-helix TC41_2679 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TC41_2679 PF09180 Prolyl-tRNA synthetase, C-terminal TC41_2679 PF03129 Anticodon binding domain TC41_2683 PF08240 Alcohol dehydrogenase GroES-like domain TC41_2683 PF00107 Zinc-binding dehydrogenase TC41_2684 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_2684 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_2684 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_2685 PF00501 AMP-binding enzyme TC41_2685 PF13193 AMP-binding enzyme C-terminal domain TC41_2686 PF00550 Phosphopantetheine attachment site TC41_2688 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TC41_2688 PF07992 Pyridine nucleotide-disulphide oxidoreductase TC41_2689 PF00501 AMP-binding enzyme TC41_2689 PF13193 AMP-binding enzyme C-terminal domain TC41_2690 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_2690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_2690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_2691 PF00793 DAHP synthetase I family TC41_2691 PF18152 DAHP synthase ferredoxin-like domain TC41_2694 PF01476 LysM domain TC41_2694 PF03734 L,D-transpeptidase catalytic domain TC41_2695 PF02080 TrkA-C domain TC41_2695 PF00999 Sodium/hydrogen exchanger family TC41_2695 PF03471 Transporter associated domain TC41_2701 PF02801 Beta-ketoacyl synthase, C-terminal domain TC41_2701 PF00109 Beta-ketoacyl synthase, N-terminal domain TC41_2703 PF00248 Aldo/keto reductase family TC41_2705 PF00672 HAMP domain TC41_2705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TC41_2705 PF02743 Cache domain TC41_2707 PF01842 ACT domain TC41_2707 PF00551 Formyl transferase TC41_2710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TC41_2711 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TC41_2711 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TC41_2712 PF01507 Phosphoadenosine phosphosulfate reductase family TC41_2713 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TC41_2713 PF10414 Sirohaem synthase dimerisation region TC41_2713 PF14824 Sirohaem biosynthesis protein central TC41_2715 PF00535 Glycosyl transferase family 2 TC41_2716 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase TC41_2717 PF00483 Nucleotidyl transferase TC41_2718 PF07690 Major Facilitator Superfamily TC41_2721 PF00535 Glycosyl transferase family 2 TC41_2722 PF00877 NlpC/P60 family TC41_2722 PF08239 Bacterial SH3 domain TC41_2722 PF01476 LysM domain TC41_2723 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) TC41_2725 PF03845 Spore germination protein TC41_2727 PF05504 Spore germination B3/ GerAC like, C-terminal TC41_2728 PF03323 Bacillus/Clostridium GerA spore germination protein TC41_2729 PF13180 PDZ domain TC41_2730 PF01593 Flavin containing amine oxidoreductase TC41_2733 PF13249 Squalene-hopene cyclase N-terminal domain TC41_2733 PF13243 Squalene-hopene cyclase C-terminal domain TC41_2734 PF01370 NAD dependent epimerase/dehydratase family TC41_2736 PF04055 Radical SAM superfamily TC41_2736 PF06463 Molybdenum Cofactor Synthesis C TC41_2737 PF01070 FMN-dependent dehydrogenase TC41_2738 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TC41_2738 PF02779 Transketolase, pyrimidine binding domain TC41_2738 PF02780 Transketolase, C-terminal domain TC41_2743 PF00501 AMP-binding enzyme TC41_2743 PF01553 Acyltransferase TC41_2746 PF07732 Multicopper oxidase TC41_2746 PF07731 Multicopper oxidase TC41_2746 PF00394 Multicopper oxidase TC41_2747 PF07731 Multicopper oxidase TC41_2747 PF07732 Multicopper oxidase TC41_2748 PF00295 Glycosyl hydrolases family 28 TC41_2749 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2750 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2753 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TC41_2753 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TC41_2755 PF00356 Bacterial regulatory proteins, lacI family TC41_2756 PF01613 Flavin reductase like domain TC41_2759 PF00120 Glutamine synthetase, catalytic domain TC41_2759 PF03951 Glutamine synthetase, beta-Grasp domain TC41_2760 PF00909 Ammonium Transporter Family TC41_2761 PF13419 Haloacid dehalogenase-like hydrolase TC41_2762 PF00005 ABC transporter TC41_2762 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TC41_2763 PF00005 ABC transporter TC41_2763 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TC41_2764 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2764 PF12911 N-terminal TM domain of oligopeptide transport permease C TC41_2765 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2766 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TC41_2767 PF00759 Glycosyl hydrolase family 9 TC41_2767 PF02927 Cellulase N-terminal ig-like domain TC41_2768 PF02445 Quinolinate synthetase A protein TC41_2769 PF00890 FAD binding domain TC41_2769 PF02910 Fumarate reductase flavoprotein C-term TC41_2770 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TC41_2770 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TC41_2772 PF00899 ThiF family TC41_2773 PF05690 Thiazole biosynthesis protein ThiG TC41_2775 PF01266 FAD dependent oxidoreductase TC41_2776 PF02581 Thiamine monophosphate synthase TC41_2777 PF01368 DHH family TC41_2777 PF02833 DHHA2 domain TC41_2779 PF07690 Major Facilitator Superfamily TC41_2782 PF13171 Protein of unknown function (DUF4004) TC41_2783 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TC41_2784 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TC41_2786 PF01370 NAD dependent epimerase/dehydratase family TC41_2786 PF08338 Domain of unknown function (DUF1731) TC41_2787 PF07690 Major Facilitator Superfamily TC41_2799 PF01965 DJ-1/PfpI family TC41_2802 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TC41_2803 PF13520 Amino acid permease TC41_2804 PF00171 Aldehyde dehydrogenase family TC41_2808 PF13181 Tetratricopeptide repeat TC41_2808 PF00535 Glycosyl transferase family 2 TC41_2810 PF03466 LysR substrate binding domain TC41_2810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TC41_2811 PF16123 Hydroxyacylglutathione hydrolase C-terminus TC41_2811 PF00753 Metallo-beta-lactamase superfamily TC41_2812 PF07690 Major Facilitator Superfamily TC41_2814 PF08240 Alcohol dehydrogenase GroES-like domain TC41_2814 PF00107 Zinc-binding dehydrogenase TC41_2815 PF13192 Thioredoxin domain TC41_2815 PF07992 Pyridine nucleotide-disulphide oxidoreductase TC41_2816 PF00578 AhpC/TSA family TC41_2817 PF01475 Ferric uptake regulator family TC41_2818 PF00501 AMP-binding enzyme TC41_2818 PF13193 AMP-binding enzyme C-terminal domain TC41_2820 PF00324 Amino acid permease TC41_2821 PF01619 Proline dehydrogenase TC41_2822 PF02954 Bacterial regulatory protein, Fis family TC41_2822 PF00158 Sigma-54 interaction domain TC41_2823 PF01565 FAD binding domain TC41_2823 PF02913 FAD linked oxidases, C-terminal domain TC41_2824 PF07690 Major Facilitator Superfamily TC41_2825 PF12146 Serine aminopeptidase, S33 TC41_2827 PF02652 L-lactate permease TC41_2829 PF01274 Malate synthase TC41_2830 PF09339 IclR helix-turn-helix domain TC41_2830 PF01614 Bacterial transcriptional regulator TC41_2831 PF01565 FAD binding domain TC41_2831 PF02913 FAD linked oxidases, C-terminal domain TC41_2832 PF13183 4Fe-4S dicluster domain TC41_2832 PF02754 Cysteine-rich domain TC41_2833 PF01565 FAD binding domain TC41_2833 PF02913 FAD linked oxidases, C-terminal domain TC41_2834 PF00535 Glycosyl transferase family 2 TC41_2842 PF04199 Putative cyclase TC41_2843 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TC41_2843 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TC41_2844 PF03462 PCRF domain TC41_2844 PF00472 RF-1 domain TC41_2846 PF07516 SecA Wing and Scaffold domain TC41_2846 PF01043 SecA preprotein cross-linking domain TC41_2846 PF02810 SEC-C motif TC41_2846 PF07517 SecA DEAD-like domain TC41_2847 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TC41_2847 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus TC41_2848 PF13439 Glycosyltransferase Family 4 TC41_2848 PF00534 Glycosyl transferases group 1 TC41_2849 PF00534 Glycosyl transferases group 1 TC41_2851 PF13181 Tetratricopeptide repeat TC41_2851 PF00535 Glycosyl transferase family 2 TC41_2854 PF00669 Bacterial flagellin N-terminal helical region TC41_2854 PF07196 Flagellin hook IN motif TC41_2854 PF00700 Bacterial flagellin C-terminal helical region TC41_2861 PF00156 Phosphoribosyl transferase domain TC41_2862 PF00512 His Kinase A (phospho-acceptor) domain TC41_2862 PF16736 Single Cache-like TC41_2862 PF00989 PAS fold TC41_2862 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_2863 PF00486 Transcriptional regulatory protein, C terminal TC41_2863 PF00072 Response regulator receiver domain TC41_2866 PF00072 Response regulator receiver domain TC41_2866 PF00196 Bacterial regulatory proteins, luxR family TC41_2869 PF03808 Glycosyl transferase WecB/TagA/CpsF family TC41_2871 PF07690 Major Facilitator Superfamily TC41_2872 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TC41_2872 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TC41_2872 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TC41_2872 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TC41_2873 PF01738 Dienelactone hydrolase family TC41_2874 PF00994 Probable molybdopterin binding domain TC41_2875 PF14748 Pyrroline-5-carboxylate reductase dimerisation TC41_2875 PF03807 NADP oxidoreductase coenzyme F420-dependent TC41_2876 PF12146 Serine aminopeptidase, S33 TC41_2879 PF02567 Phenazine biosynthesis-like protein TC41_2880 PF03109 ABC1 family TC41_2883 PF01479 S4 domain TC41_2883 PF00849 RNA pseudouridylate synthase TC41_2886 PF02424 ApbE family TC41_2888 PF00356 Bacterial regulatory proteins, lacI family TC41_2890 PF00248 Aldo/keto reductase family TC41_2891 PF02683 Cytochrome C biogenesis protein transmembrane region TC41_2892 PF00578 AhpC/TSA family TC41_2894 PF13472 GDSL-like Lipase/Acylhydrolase family TC41_2896 PF02424 ApbE family TC41_2900 PF07690 Major Facilitator Superfamily TC41_2901 PF02569 Pantoate-beta-alanine ligase TC41_2902 PF02548 Ketopantoate hydroxymethyltransferase TC41_2905 PF07690 Major Facilitator Superfamily TC41_2907 PF01475 Ferric uptake regulator family TC41_2908 PF01297 Zinc-uptake complex component A periplasmic TC41_2909 PF00005 ABC transporter TC41_2910 PF00950 ABC 3 transport family TC41_2912 PF03061 Thioesterase superfamily TC41_2914 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TC41_2914 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TC41_2916 PF03707 Bacterial signalling protein N terminal repeat TC41_2916 PF00990 Diguanylate cyclase, GGDEF domain TC41_2916 PF00563 EAL domain TC41_2917 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TC41_2917 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TC41_2921 PF04234 CopC domain TC41_2921 PF05425 Copper resistance protein D TC41_2921 PF13115 YtkA-like TC41_2922 PF07987 Domain of unkown function (DUF1775) TC41_2923 PF01384 Phosphate transporter family TC41_2926 PF00480 ROK family TC41_2926 PF01047 MarR family TC41_2927 PF00933 Glycosyl hydrolase family 3 N terminal domain TC41_2927 PF14310 Fibronectin type III-like domain TC41_2927 PF01915 Glycosyl hydrolase family 3 C-terminal domain TC41_2928 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2930 PF00528 Binding-protein-dependent transport system inner membrane component TC41_2933 PF01569 PAP2 superfamily TC41_2936 PF08281 Sigma-70, region 4 TC41_2936 PF04542 Sigma-70 region 2 TC41_2941 PF02583 Metal-sensitive transcriptional repressor TC41_2942 PF01925 Sulfite exporter TauE/SafE TC41_2943 PF00581 Rhodanese-like domain TC41_2943 PF00753 Metallo-beta-lactamase superfamily TC41_2944 PF00581 Rhodanese-like domain TC41_2944 PF01206 Sulfurtransferase TusA TC41_2946 PF13686 DsrE/DsrF/DrsH-like family TC41_2947 PF00581 Rhodanese-like domain TC41_2948 PF01925 Sulfite exporter TauE/SafE TC41_2953 PF09827 CRISPR associated protein Cas2 TC41_2954 PF01867 CRISPR associated protein Cas1 TC41_2957 PF00239 Resolvase, N terminal domain TC41_2958 PF12323 Helix-turn-helix domain TC41_2958 PF07282 Putative transposase DNA-binding domain TC41_2958 PF01385 Probable transposase TC41_2960 PF13667 ThiC-associated domain TC41_2960 PF01964 Radical SAM ThiC family TC41_2963 PF02086 D12 class N6 adenine-specific DNA methyltransferase TC41_2964 PF00403 Heavy-metal-associated domain TC41_2965 PF02583 Metal-sensitive transcriptional repressor TC41_2967 PF03780 Asp23 family, cell envelope-related function TC41_2971 PF03780 Asp23 family, cell envelope-related function TC41_2972 PF01037 Lrp/AsnC ligand binding domain TC41_2973 PF00155 Aminotransferase class I and II TC41_2974 PF07690 Major Facilitator Superfamily TC41_2975 PF08240 Alcohol dehydrogenase GroES-like domain TC41_2975 PF00107 Zinc-binding dehydrogenase TC41_2976 PF00440 Bacterial regulatory proteins, tetR family TC41_2977 PF00202 Aminotransferase class-III TC41_2979 PF03050 Transposase IS66 family TC41_2979 PF13007 Transposase C of IS166 homeodomain TC41_2979 PF13817 IS66 C-terminal element TC41_2979 PF13005 zinc-finger binding domain of transposase IS66 TC41_2982 PF01180 Dihydroorotate dehydrogenase TC41_2983 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TC41_2983 PF07992 Pyridine nucleotide-disulphide oxidoreductase TC41_2986 PF13007 Transposase C of IS166 homeodomain TC41_2986 PF13817 IS66 C-terminal element TC41_2986 PF03050 Transposase IS66 family TC41_2986 PF13005 zinc-finger binding domain of transposase IS66 TC41_2988 PF00872 Transposase, Mutator family TC41_2995 PF00872 Transposase, Mutator family TC41_2997 PF01380 SIS domain TC41_2998 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TC41_2998 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TC41_2998 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TC41_2998 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TC41_3000 PF07949 YbbR-like protein TC41_3001 PF02457 DisA bacterial checkpoint controller nucleotide-binding TC41_3002 PF01522 Polysaccharide deacetylase TC41_3005 PF10609 NUBPL iron-transfer P-loop NTPase TC41_3007 PF01520 N-acetylmuramoyl-L-alanine amidase TC41_3008 PF00380 Ribosomal protein S9/S16 TC41_3009 PF00572 Ribosomal protein L13 TC41_3010 PF01416 tRNA pseudouridine synthase TC41_3011 PF01196 Ribosomal protein L17 TC41_3012 PF01000 RNA polymerase Rpb3/RpoA insert domain TC41_3012 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TC41_3012 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TC41_3013 PF01479 S4 domain TC41_3013 PF00163 Ribosomal protein S4/S9 N-terminal domain TC41_3014 PF00411 Ribosomal protein S11 TC41_3015 PF00416 Ribosomal protein S13/S18 TC41_3016 PF00444 Ribosomal protein L36 TC41_3017 PF01176 Translation initiation factor 1A / IF-1 TC41_3019 PF05191 Adenylate kinase, active site lid TC41_3020 PF00344 SecY translocase TC41_3021 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TC41_3022 PF00327 Ribosomal protein L30p/L7e TC41_3023 PF00333 Ribosomal protein S5, N-terminal domain TC41_3023 PF03719 Ribosomal protein S5, C-terminal domain TC41_3025 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TC41_3026 PF00347 Ribosomal protein L6 TC41_3027 PF00410 Ribosomal protein S8 TC41_3028 PF00253 Ribosomal protein S14p/S29e TC41_3029 PF00281 Ribosomal protein L5 TC41_3029 PF00673 ribosomal L5P family C-terminus TC41_3030 PF00467 KOW motif TC41_3030 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TC41_3031 PF00238 Ribosomal protein L14p/L23e TC41_3032 PF00366 Ribosomal protein S17 TC41_3033 PF00831 Ribosomal L29 protein TC41_3034 PF00252 Ribosomal protein L16p/L10e TC41_3035 PF00189 Ribosomal protein S3, C-terminal domain TC41_3035 PF07650 KH domain TC41_3036 PF00237 Ribosomal protein L22p/L17e TC41_3037 PF00203 Ribosomal protein S19 TC41_3038 PF00181 Ribosomal Proteins L2, RNA binding domain TC41_3038 PF03947 Ribosomal Proteins L2, C-terminal domain TC41_3039 PF00276 Ribosomal protein L23 TC41_3040 PF00573 Ribosomal protein L4/L1 family TC41_3041 PF00297 Ribosomal protein L3 TC41_3042 PF00338 Ribosomal protein S10p/S20e TC41_3043 PF03143 Elongation factor Tu C-terminal domain TC41_3043 PF03144 Elongation factor Tu domain 2 TC41_3043 PF00009 Elongation factor Tu GTP binding domain TC41_3044 PF03764 Elongation factor G, domain IV TC41_3044 PF03144 Elongation factor Tu domain 2 TC41_3044 PF00009 Elongation factor Tu GTP binding domain TC41_3044 PF14492 Elongation Factor G, domain II TC41_3044 PF00679 Elongation factor G C-terminus TC41_3045 PF00177 Ribosomal protein S7p/S5e TC41_3046 PF00164 Ribosomal protein S12/S23 TC41_3047 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family TC41_3048 PF00623 RNA polymerase Rpb1, domain 2 TC41_3048 PF04998 RNA polymerase Rpb1, domain 5 TC41_3048 PF05000 RNA polymerase Rpb1, domain 4 TC41_3048 PF04983 RNA polymerase Rpb1, domain 3 TC41_3048 PF04997 RNA polymerase Rpb1, domain 1 TC41_3049 PF04560 RNA polymerase Rpb2, domain 7 TC41_3049 PF00562 RNA polymerase Rpb2, domain 6 TC41_3049 PF10385 RNA polymerase beta subunit external 1 domain TC41_3049 PF04565 RNA polymerase Rpb2, domain 3 TC41_3049 PF04561 RNA polymerase Rpb2, domain 2 TC41_3049 PF04563 RNA polymerase beta subunit TC41_3050 PF05175 Methyltransferase small domain TC41_3051 PF16320 Ribosomal protein L7/L12 dimerisation domain TC41_3051 PF00542 Ribosomal protein L7/L12 C-terminal domain TC41_3052 PF00466 Ribosomal protein L10 TC41_3053 PF00687 Ribosomal protein L1p/L10e family TC41_3054 PF03946 Ribosomal protein L11, N-terminal domain TC41_3054 PF00298 Ribosomal protein L11, RNA binding domain TC41_3055 PF02357 Transcription termination factor nusG TC41_3055 PF00467 KOW motif TC41_3057 PF00471 Ribosomal protein L33 TC41_3058 PF08281 Sigma-70, region 4 TC41_3058 PF04542 Sigma-70 region 2 TC41_3060 PF08032 RNA 2'-O ribose methyltransferase substrate binding TC41_3060 PF00588 SpoU rRNA Methylase family TC41_3061 PF00636 Ribonuclease III domain TC41_3062 PF09190 DALR domain TC41_3062 PF01406 tRNA synthetases class I (C) catalytic domain TC41_3063 PF00749 tRNA synthetases class I (E and Q), catalytic domain TC41_3064 PF02542 YgbB family TC41_3065 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TC41_3067 PF01066 CDP-alcohol phosphatidyltransferase TC41_3068 PF10635 DisA bacterial checkpoint controller linker region TC41_3068 PF02457 DisA bacterial checkpoint controller nucleotide-binding TC41_3069 PF18073 Rubredoxin metal binding domain TC41_3070 PF07724 AAA domain (Cdc48 subfamily) TC41_3070 PF00004 ATPase family associated with various cellular activities (AAA) TC41_3070 PF17871 AAA lid domain TC41_3070 PF02861 Clp amino terminal domain, pathogenicity island component TC41_3070 PF10431 C-terminal, D2-small domain, of ClpB protein TC41_3071 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain TC41_3072 PF02151 UvrB/uvrC motif TC41_3073 PF17727 CtsR C-terminal dimerization domain TC41_3073 PF05848 CtsR N-terminal HTH domain TC41_3075 PF00665 Integrase core domain TC41_3075 PF02796 Helix-turn-helix domain of resolvase TC41_3076 PF01695 IstB-like ATP binding protein TC41_3079 PF07977 FabA-like domain TC41_3080 PF01066 CDP-alcohol phosphatidyltransferase TC41_3081 PF00460 Flagella basal body rod protein TC41_3081 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TC41_3082 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TC41_3082 PF00460 Flagella basal body rod protein TC41_3084 PF12116 Stage III sporulation protein D TC41_3085 PF01551 Peptidase family M23 TC41_3087 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TC41_3091 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TC41_3091 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TC41_3092 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TC41_3092 PF02874 ATP synthase alpha/beta family, beta-barrel domain TC41_3093 PF00231 ATP synthase TC41_3094 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TC41_3094 PF02874 ATP synthase alpha/beta family, beta-barrel domain TC41_3094 PF00306 ATP synthase alpha/beta chain, C terminal domain TC41_3095 PF00213 ATP synthase delta (OSCP) subunit TC41_3096 PF00430 ATP synthase B/B' CF(0) TC41_3097 PF00137 ATP synthase subunit C TC41_3098 PF00119 ATP synthase A chain TC41_3101 PF02350 UDP-N-acetylglucosamine 2-epimerase TC41_3103 PF00464 Serine hydroxymethyltransferase TC41_3104 PF04260 Protein of unknown function (DUF436) TC41_3106 PF02659 Putative manganese efflux pump TC41_3109 PF06912 Protein of unknown function (DUF1275) TC41_3113 PF01300 Telomere recombination TC41_3113 PF03481 Putative GTP-binding controlling metal-binding TC41_3114 PF09551 Stage II sporulation protein R (spore_II_R) TC41_3115 PF05175 Methyltransferase small domain TC41_3115 PF17827 PrmC N-terminal domain TC41_3116 PF00472 RF-1 domain TC41_3116 PF03462 PCRF domain TC41_3117 PF01197 Ribosomal protein L31 TC41_3120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TC41_3120 PF07498 Rho termination factor, N-terminal domain TC41_3120 PF07497 Rho termination factor, RNA-binding domain TC41_3122 PF00923 Transaldolase/Fructose-6-phosphate aldolase TC41_3123 PF00072 Response regulator receiver domain TC41_3124 PF00117 Glutamine amidotransferase class-I TC41_3124 PF06418 CTP synthase N-terminus TC41_3126 PF05066 HB1, ASXL, restriction endonuclease HTH domain TC41_3127 PF00378 Enoyl-CoA hydratase/isomerase TC41_3128 PF03746 LamB/YcsF family TC41_3129 PF02626 Carboxyltransferase domain, subdomain A and B TC41_3130 PF02682 Carboxyltransferase domain, subdomain C and D TC41_3131 PF00535 Glycosyl transferase family 2 TC41_3133 PF00491 Arginase family TC41_3134 PF17284 Spermidine synthase tetramerisation domain TC41_3135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_3135 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_3135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_3136 PF14765 Polyketide synthase dehydratase TC41_3136 PF08659 KR domain TC41_3136 PF00109 Beta-ketoacyl synthase, N-terminal domain TC41_3136 PF16197 Ketoacyl-synthetase C-terminal extension TC41_3136 PF02801 Beta-ketoacyl synthase, C-terminal domain TC41_3136 PF08240 Alcohol dehydrogenase GroES-like domain TC41_3136 PF00698 Acyl transferase domain TC41_3136 PF00550 Phosphopantetheine attachment site TC41_3136 PF00107 Zinc-binding dehydrogenase TC41_3137 PF00912 Transglycosylase TC41_3137 PF00905 Penicillin binding protein transpeptidase domain TC41_3138 PF00155 Aminotransferase class I and II TC41_3144 PF04055 Radical SAM superfamily TC41_3144 PF06463 Molybdenum Cofactor Synthesis C TC41_3145 PF02142 MGS-like domain TC41_3147 PF00557 Metallopeptidase family M24 TC41_3147 PF05195 Aminopeptidase P, N-terminal domain TC41_3153 PF07690 Major Facilitator Superfamily TC41_3154 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TC41_3154 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TC41_3157 PF01053 Cys/Met metabolism PLP-dependent enzyme TC41_3159 PF01053 Cys/Met metabolism PLP-dependent enzyme TC41_3163 PF01227 GTP cyclohydrolase I TC41_3164 PF00348 Polyprenyl synthetase TC41_3166 PF01593 Flavin containing amine oxidoreductase TC41_3167 PF00067 Cytochrome P450 TC41_3169 PF02660 Glycerol-3-phosphate acyltransferase TC41_3174 PF12867 DinB superfamily TC41_3180 PF00356 Bacterial regulatory proteins, lacI family TC41_3181 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TC41_3181 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TC41_3182 PF01048 Phosphorylase superfamily TC41_3183 PF00132 Bacterial transferase hexapeptide (six repeats) TC41_3183 PF14602 Hexapeptide repeat of succinyl-transferase TC41_3183 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal TC41_3184 PF01546 Peptidase family M20/M25/M40 TC41_3184 PF07687 Peptidase dimerisation domain TC41_3186 PF00155 Aminotransferase class I and II TC41_3190 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TC41_3190 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TC41_3191 PF17850 CysA C-terminal regulatory domain TC41_3191 PF12857 TOBE-like domain TC41_3191 PF00005 ABC transporter TC41_3192 PF00005 ABC transporter TC41_3192 PF08402 TOBE domain TC41_3193 PF00528 Binding-protein-dependent transport system inner membrane component TC41_3194 PF13411 MerR HTH family regulatory protein TC41_3195 PF02770 Acyl-CoA dehydrogenase, middle domain TC41_3195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TC41_3195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TC41_3196 PF00501 AMP-binding enzyme TC41_3196 PF13193 AMP-binding enzyme C-terminal domain TC41_3197 PF04055 Radical SAM superfamily TC41_3197 PF06968 Biotin and Thiamin Synthesis associated domain TC41_3198 PF01494 FAD binding domain TC41_3199 PF03649 Uncharacterised protein family (UPF0014) TC41_3200 PF00005 ABC transporter TC41_3201 PF16884 N-terminal domain of oxidoreductase TC41_3201 PF00107 Zinc-binding dehydrogenase TC41_3206 PF02558 Ketopantoate reductase PanE/ApbA TC41_3206 PF08546 Ketopantoate reductase PanE/ApbA C terminal TC41_3209 PF00990 Diguanylate cyclase, GGDEF domain TC41_3210 PF16338 Domain of unknown function (DUF4968) TC41_3210 PF13802 Galactose mutarotase-like TC41_3210 PF17137 Domain of unknown function (DUF5110) TC41_3210 PF01055 Glycosyl hydrolases family 31 TC41_3211 PF02903 Alpha amylase, N-terminal ig-like domain TC41_3211 PF00128 Alpha amylase, catalytic domain TC41_3211 PF16657 Maltogenic Amylase, C-terminal domain TC41_3213 PF00356 Bacterial regulatory proteins, lacI family TC41_3213 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family TC41_3214 PF00528 Binding-protein-dependent transport system inner membrane component TC41_3215 PF00528 Binding-protein-dependent transport system inner membrane component TC41_3216 PF01547 Bacterial extracellular solute-binding protein TC41_3217 PF02903 Alpha amylase, N-terminal ig-like domain TC41_3217 PF00128 Alpha amylase, catalytic domain TC41_3218 PF07859 alpha/beta hydrolase fold TC41_3219 PF05726 Pirin C-terminal cupin domain TC41_3219 PF02678 Pirin TC41_3220 PF00293 NUDIX domain TC41_3223 PF07690 Major Facilitator Superfamily TC41_3225 PF00239 Resolvase, N terminal domain TC41_3226 PF01385 Probable transposase TC41_3226 PF12323 Helix-turn-helix domain TC41_3226 PF07282 Putative transposase DNA-binding domain TC41_3233 PF18019 HD domain TC41_3239 PF00171 Aldehyde dehydrogenase family TC41_3240 PF00696 Amino acid kinase family TC41_3240 PF01472 PUA domain TC41_3241 PF01557 Fumarylacetoacetate (FAA) hydrolase family TC41_3242 PF01055 Glycosyl hydrolases family 31 TC41_3242 PF13802 Galactose mutarotase-like TC41_3243 PF00582 Universal stress protein family TC41_3244 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TC41_3245 PF12833 Helix-turn-helix domain TC41_3245 PF10114 Sensory domain found in PocR TC41_3246 PF02449 Beta-galactosidase TC41_3246 PF08533 Beta-galactosidase C-terminal domain TC41_3246 PF08532 Beta-galactosidase trimerisation domain TC41_3247 PF00909 Ammonium Transporter Family TC41_3248 PF00543 Nitrogen regulatory protein P-II TC41_3256 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TC41_3257 PF00528 Binding-protein-dependent transport system inner membrane component TC41_3261 PF13685 Iron-containing alcohol dehydrogenase TC41_3262 PF02610 L-arabinose isomerase TC41_3262 PF11762 L-arabinose isomerase C-terminal domain TC41_3263 PF00596 Class II Aldolase and Adducin N-terminal domain TC41_3264 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TC41_3264 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TC41_3265 PF00083 Sugar (and other) transporter TC41_3267 PF00392 Bacterial regulatory proteins, gntR family TC41_3269 PF07944 Beta-L-arabinofuranosidase, GH127 TC41_3271 PF07690 Major Facilitator Superfamily TC41_3273 PF00226 DnaJ domain TC41_3273 PF01556 DnaJ C terminal domain TC41_3273 PF00684 DnaJ central domain TC41_3274 PF00106 short chain dehydrogenase TC41_3275 PF00563 EAL domain TC41_3275 PF00990 Diguanylate cyclase, GGDEF domain TC41_3275 PF03707 Bacterial signalling protein N terminal repeat TC41_3275 PF13188 PAS domain TC41_3277 PF03466 LysR substrate binding domain TC41_3277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TC41_3278 PF02590 Predicted SPOUT methyltransferase TC41_3279 PF13180 PDZ domain TC41_3280 PF00753 Metallo-beta-lactamase superfamily TC41_3283 PF00672 HAMP domain TC41_3283 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TC41_3283 PF13426 PAS domain TC41_3283 PF00512 His Kinase A (phospho-acceptor) domain TC41_3284 PF00486 Transcriptional regulatory protein, C terminal TC41_3284 PF00072 Response regulator receiver domain TC41_3286 PF00772 DnaB-like helicase N terminal domain TC41_3286 PF03796 DnaB-like helicase C terminal domain TC41_3287 PF03948 Ribosomal protein L9, C-terminal domain TC41_3287 PF01281 Ribosomal protein L9, N-terminal domain TC41_3289 PF01084 Ribosomal protein S18 TC41_3290 PF00436 Single-strand binding protein family TC41_3291 PF01250 Ribosomal protein S6 TC41_3292 PF01926 50S ribosome-binding GTPase TC41_3292 PF06071 Protein of unknown function (DUF933) TC41_3293 PF01568 Molydopterin dinucleotide binding domain TC41_3293 PF00384 Molybdopterin oxidoreductase TC41_3293 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TC41_3294 PF06107 Bacterial protein of unknown function (DUF951) TC41_3295 PF00924 Mechanosensitive ion channel TC41_3297 PF06866 Protein of unknown function (DUF1256) TC41_3299 PF04474 Protein of unknown function (DUF554) TC41_3300 PF02195 ParB-like nuclease domain TC41_3300 PF17762 HTH domain found in ParB protein TC41_3301 PF13614 AAA domain TC41_3302 PF02195 ParB-like nuclease domain TC41_3302 PF17762 HTH domain found in ParB protein TC41_3303 PF02527 rRNA small subunit methyltransferase G TC41_3304 PF13932 GidA associated domain TC41_3304 PF01134 Glucose inhibited division protein A TC41_3305 PF10396 GTP-binding protein TrmE N-terminus TC41_3305 PF01926 50S ribosome-binding GTPase TC41_3305 PF12631 MnmE helical domain TC41_3306 PF01424 R3H domain TC41_3306 PF14804 Jag N-terminus TC41_3307 PF02096 60Kd inner membrane protein TC41_3308 PF01809 Putative membrane protein insertion efficiency factor TC41_3309 PF00825 Ribonuclease P TC41_3310 PF00468 Ribosomal protein L34