TC41_0001 SM00382 ATPases associated with a variety of cellular activities TC41_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain TC41_0003 SM00480 DNA polymerase III beta subunit TC41_0006 SM00387 Histidine kinase-like ATPases TC41_0006 SM00433 TopoisomeraseII TC41_0007 SM00434 DNA Topoisomerase IV TC41_0014 SM00116 Domain in cystathionine beta-synthase and other proteins. TC41_0014 SM01240 TC41_0014 TC41_0032 SM00984 UDP binding domain TC41_0040 SM00857 Resolvase, N terminal domain TC41_0044 SM00382 ATPases associated with a variety of cellular activities TC41_0049 SM00849 Metallo-beta-lactamase superfamily TC41_0051 SM00382 ATPases associated with a variety of cellular activities TC41_0055 SM00382 ATPases associated with a variety of cellular activities TC41_0058 SM00342 helix_turn_helix, arabinose operon control protein TC41_0059 SM00448 cheY-homologous receiver domain TC41_0059 SM00862 Transcriptional regulatory protein, C terminal TC41_0060 SM00387 Histidine kinase-like ATPases TC41_0060 SM00388 His Kinase A (phosphoacceptor) domain TC41_0065 SM00354 helix_turn _helix lactose operon repressor TC41_0068 SM00422 helix_turn_helix, mercury resistance TC41_0074 SM00944 Pro-kumamolisin, activation domain TC41_0075 SM00345 helix_turn_helix gluconate operon transcriptional repressor TC41_0075 SM00895 TC41_0075 TC41_0076 SM00822 TC41_0076 TC41_0081 SM00091 PAS domain TC41_0081 SM00387 Histidine kinase-like ATPases TC41_0081 SM00388 His Kinase A (phosphoacceptor) domain TC41_0085 SM00072 Guanylate kinase homologues. TC41_0086 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_0086 SM00387 Histidine kinase-like ATPases TC41_0086 SM00388 His Kinase A (phosphoacceptor) domain TC41_0087 SM00460 Transglutaminase/protease-like homologues TC41_0093 SM00155 Phospholipase D. Active site motifs. TC41_0104 SM00855 Phosphoglycerate mutase family TC41_0120 SM01007 Class II Aldolase and Adducin N-terminal domain TC41_0127 SM00387 Histidine kinase-like ATPases TC41_0127 SM00388 His Kinase A (phosphoacceptor) domain TC41_0129 SM00382 ATPases associated with a variety of cellular activities TC41_0131 SM00493 TC41_0131 TC41_0137 SM01007 Class II Aldolase and Adducin N-terminal domain TC41_0139 SM00450 Rhodanese Homology Domain TC41_0139 SM00849 Metallo-beta-lactamase superfamily TC41_0142 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TC41_0142 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_0143 SM00448 cheY-homologous receiver domain TC41_0145 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TC41_0146 SM00073 Histidine Phosphotransfer domain TC41_0146 SM00260 Two component signalling adaptor domain TC41_0146 SM00387 Histidine kinase-like ATPases TC41_0146 SM01231 TC41_0146 TC41_0147 SM00260 Two component signalling adaptor domain TC41_0148 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TC41_0166 SM00966 SpoVT / AbrB like domain TC41_0171 SM00650 Ribosomal RNA adenine dimethylases TC41_0179 SM00421 helix_turn_helix, Lux Regulon TC41_0180 SM00919 Malic enzyme, NAD binding domain TC41_0180 SM01274 TC41_0180 TC41_0198 SM00822 TC41_0198 TC41_0200 SM00822 TC41_0200 TC41_0205 SM00346 helix_turn_helix isocitrate lyase regulation TC41_0220 SM00382 ATPases associated with a variety of cellular activities TC41_0246 SM01400 TC41_0246 TC41_0249 SM00487 DEAD-like helicases superfamily TC41_0249 SM00490 helicase superfamily c-terminal domain TC41_0249 SM00982 TC41_0249 TC41_0249 SM01058 CarD-like/TRCF domain TC41_0250 SM00966 SpoVT / AbrB like domain TC41_0251 SM00411 bacterial (prokaryotic) histone like domain TC41_0252 SM00363 S4 RNA-binding domain TC41_0256 SM00316 Ribosomal protein S1-like RNA-binding domain TC41_0260 SM00331 Sigma factor PP2C-like phosphatases TC41_0263 SM00220 Serine/Threonine protein kinases, catalytic domain TC41_0264 SM00977 TilS substrate C-terminal domain TC41_0266 SM00382 ATPases associated with a variety of cellular activities TC41_0268 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TC41_0272 SM00530 Helix-turn-helix XRE-family like proteins TC41_0287 SM00829 Enoylreductase TC41_0305 SM00382 ATPases associated with a variety of cellular activities TC41_0306 SM00382 ATPases associated with a variety of cellular activities TC41_0308 SM00052 Putative diguanylate phosphodiesterase TC41_0308 SM00267 diguanylate cyclase TC41_0311 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TC41_0311 SM00450 Rhodanese Homology Domain TC41_0325 SM00944 Pro-kumamolisin, activation domain TC41_0327 SM00448 cheY-homologous receiver domain TC41_0327 SM00862 Transcriptional regulatory protein, C terminal TC41_0328 SM00387 Histidine kinase-like ATPases TC41_0328 SM00388 His Kinase A (phosphoacceptor) domain TC41_0338 SM00257 Lysin motif TC41_0338 SM00636 TC41_0338 TC41_0340 SM00382 ATPases associated with a variety of cellular activities TC41_0345 SM00917 LeuA allosteric (dimerisation) domain TC41_0356 SM00028 Tetratricopeptide repeats TC41_0360 SM00530 Helix-turn-helix XRE-family like proteins TC41_0367 SM00382 ATPases associated with a variety of cellular activities TC41_0380 SM00347 helix_turn_helix multiple antibiotic resistance protein TC41_0381 SM00382 ATPases associated with a variety of cellular activities TC41_0385 SM00382 ATPases associated with a variety of cellular activities TC41_0404 SM00028 Tetratricopeptide repeats TC41_0409 SM00382 ATPases associated with a variety of cellular activities TC41_0422 SM00382 ATPases associated with a variety of cellular activities TC41_0424 SM00857 Resolvase, N terminal domain TC41_0426 SM00487 DEAD-like helicases superfamily TC41_0426 SM00490 helicase superfamily c-terminal domain TC41_0429 SM00091 PAS domain TC41_0429 SM00382 ATPases associated with a variety of cellular activities TC41_0433 SM00460 Transglutaminase/protease-like homologues TC41_0439 SM00091 PAS domain TC41_0439 SM00382 ATPases associated with a variety of cellular activities TC41_0443 SM00382 ATPases associated with a variety of cellular activities TC41_0444 SM00382 ATPases associated with a variety of cellular activities TC41_0448 SM00047 Lysozyme subfamily 2 TC41_0449 SM00822 TC41_0449 TC41_0450 SM00342 helix_turn_helix, arabinose operon control protein TC41_0453 SM01217 TC41_0453 TC41_0454 SM00903 Flavin reductase like domain TC41_0456 SM00345 helix_turn_helix gluconate operon transcriptional repressor TC41_0456 SM00895 TC41_0456 TC41_0462 SM01130 TC41_0462 TC41_0471 SM00493 TC41_0471 TC41_0482 SM01005 Alanine racemase, C-terminal domain TC41_0485 SM00996 S-adenosyl-L-homocysteine hydrolase TC41_0485 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TC41_0486 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_0486 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TC41_0497 SM00382 ATPases associated with a variety of cellular activities TC41_0499 SM00014 Acid phosphatase homologues TC41_0502 SM00852 Probable molybdopterin binding domain TC41_0504 SM00883 Chaperonin 10 Kd subunit TC41_0510 SM00450 Rhodanese Homology Domain TC41_0511 SM00091 PAS domain TC41_0511 SM00387 Histidine kinase-like ATPases TC41_0512 SM00421 helix_turn_helix, Lux Regulon TC41_0512 SM00448 cheY-homologous receiver domain TC41_0514 SM00382 ATPases associated with a variety of cellular activities TC41_0516 SM00460 Transglutaminase/protease-like homologues TC41_0517 SM00849 Metallo-beta-lactamase superfamily TC41_0520 SM00998 Adenylosuccinate lyase C-terminus TC41_0523 SM01211 TC41_0523 TC41_0527 SM00798 AICARFT/IMPCHase bienzyme TC41_0527 SM00851 MGS-like domain TC41_0528 SM01209 TC41_0528 TC41_0528 SM01210 TC41_0528 TC41_0532 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain TC41_0533 SM00382 ATPases associated with a variety of cellular activities TC41_0538 SM00487 DEAD-like helicases superfamily TC41_0538 SM00490 helicase superfamily c-terminal domain TC41_0539 SM00382 ATPases associated with a variety of cellular activities TC41_0541 SM00836 DALR anticodon binding domain TC41_0541 SM01016 Arginyl tRNA synthetase N terminal dom TC41_0544 SM00028 Tetratricopeptide repeats TC41_0553 SM00478 endonuclease III TC41_0553 SM00525 TC41_0553 TC41_0556 SM00345 helix_turn_helix gluconate operon transcriptional repressor TC41_0556 SM00895 TC41_0556 TC41_0561 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains TC41_0562 SM00487 DEAD-like helicases superfamily TC41_0562 SM00490 helicase superfamily c-terminal domain TC41_0566 SM00478 endonuclease III TC41_0566 SM00525 TC41_0566 TC41_0575 SM00091 PAS domain TC41_0575 SM00382 ATPases associated with a variety of cellular activities TC41_0578 SM00567 E-Z type HEAT repeats TC41_0581 SM01329 TC41_0581 TC41_0582 SM00346 helix_turn_helix isocitrate lyase regulation TC41_0587 SM00861 Transketolase, pyrimidine binding domain TC41_0591 SM00763 PrkA AAA domain TC41_0602 SM00052 Putative diguanylate phosphodiesterase TC41_0610 SM00382 ATPases associated with a variety of cellular activities TC41_0612 SM00382 ATPases associated with a variety of cellular activities TC41_0613 SM00345 helix_turn_helix gluconate operon transcriptional repressor TC41_0614 SM00849 Metallo-beta-lactamase superfamily TC41_0616 SM00347 helix_turn_helix multiple antibiotic resistance protein TC41_0619 SM00382 ATPases associated with a variety of cellular activities TC41_0623 SM00421 helix_turn_helix, Lux Regulon TC41_0623 SM00448 cheY-homologous receiver domain TC41_0641 SM00448 cheY-homologous receiver domain TC41_0641 SM00862 Transcriptional regulatory protein, C terminal TC41_0642 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_0642 SM00387 Histidine kinase-like ATPases TC41_0642 SM00388 His Kinase A (phosphoacceptor) domain TC41_0646 SM00857 Resolvase, N terminal domain TC41_0652 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TC41_0652 SM00292 breast cancer carboxy-terminal domain TC41_0652 SM00532 Ligase N family TC41_0657 SM00845 GatB domain TC41_0662 SM00857 Resolvase, N terminal domain TC41_0667 SM00862 Transcriptional regulatory protein, C terminal TC41_0673 SM01007 Class II Aldolase and Adducin N-terminal domain TC41_0678 SM00382 ATPases associated with a variety of cellular activities TC41_0684 SM00420 helix_turn_helix, Deoxyribose operon repressor TC41_0684 SM01134 TC41_0684 TC41_0709 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain TC41_0711 SM00387 Histidine kinase-like ATPases TC41_0711 SM00388 His Kinase A (phosphoacceptor) domain TC41_0716 SM01192 TC41_0716 TC41_0716 SM01193 TC41_0716 TC41_0720 SM00316 Ribosomal protein S1-like RNA-binding domain TC41_0720 SM00955 TC41_0720 TC41_0737 SM00944 Pro-kumamolisin, activation domain TC41_0740 SM00903 Flavin reductase like domain TC41_0744 SM00796 Allophanate hydrolase subunit 1 TC41_0744 SM00797 Allophanate hydrolase subunit 2 TC41_0744 SM00878 Biotin carboxylase C-terminal domain TC41_0752 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TC41_0760 SM00631 TC41_0760 TC41_0771 SM01068 Putative carbohydrate binding domain TC41_0779 SM00382 ATPases associated with a variety of cellular activities TC41_0779 SM01086 C-terminal, D2-small domain, of ClpB protein TC41_0788 SM00342 helix_turn_helix, arabinose operon control protein TC41_0788 SM00448 cheY-homologous receiver domain TC41_0791 SM01001 AIR carboxylase TC41_0798 SM00852 Probable molybdopterin binding domain TC41_0801 SM00859 Semialdehyde dehydrogenase, NAD binding domain TC41_0825 SM00861 Transketolase, pyrimidine binding domain TC41_0832 SM00829 Enoylreductase TC41_0833 SM00382 ATPases associated with a variety of cellular activities TC41_0835 SM00382 ATPases associated with a variety of cellular activities TC41_0836 SM00829 Enoylreductase TC41_0838 SM00382 ATPases associated with a variety of cellular activities TC41_0839 SM00382 ATPases associated with a variety of cellular activities TC41_0844 SM00926 Molybdopterin oxidoreductase Fe4S4 domain TC41_0844 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TC41_0848 SM00450 Rhodanese Homology Domain TC41_0851 SM00857 Resolvase, N terminal domain TC41_0855 SM00917 LeuA allosteric (dimerisation) domain TC41_0860 SM00857 Resolvase, N terminal domain TC41_0869 SM00382 ATPases associated with a variety of cellular activities TC41_0870 SM00867 YceI-like domain TC41_0884 SM00342 helix_turn_helix, arabinose operon control protein TC41_0890 SM00226 Low molecular weight phosphatase family TC41_0894 SM00881 CoA binding domain TC41_0899 SM00420 helix_turn_helix, Deoxyribose operon repressor TC41_0899 SM01134 TC41_0899 TC41_0907 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TC41_0913 SM00861 Transketolase, pyrimidine binding domain TC41_0921 SM00354 helix_turn _helix lactose operon repressor TC41_0929 SM00829 Enoylreductase TC41_0930 SM00829 Enoylreductase TC41_0932 SM00257 Lysin motif TC41_0944 SM00829 Enoylreductase TC41_0952 SM00382 ATPases associated with a variety of cellular activities TC41_0953 SM00861 Transketolase, pyrimidine binding domain TC41_0962 SM00450 Rhodanese Homology Domain TC41_0975 SM00905 Dihydroneopterin aldolase TC41_0980 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TC41_0984 SM00857 Resolvase, N terminal domain TC41_0996 SM01002 Alanine dehydrogenase/PNT, C-terminal domain TC41_0996 SM01003 Alanine dehydrogenase/PNT, N-terminal domain TC41_0998 SM00382 ATPases associated with a variety of cellular activities TC41_1020 SM00487 DEAD-like helicases superfamily TC41_1020 SM00490 helicase superfamily c-terminal domain TC41_1025 SM00481 DNA polymerase alpha chain like domain TC41_1026 SM00155 Phospholipase D. Active site motifs. TC41_1027 SM00014 Acid phosphatase homologues TC41_1033 SM00518 AP endonuclease family 2 TC41_1056 SM00382 ATPases associated with a variety of cellular activities TC41_1064 SM00849 Metallo-beta-lactamase superfamily TC41_1079 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TC41_1097 SM01350 TC41_1097 TC41_1110 SM01038 Beta galactosidase small chain TC41_1120 SM00822 TC41_1120 TC41_1124 SM00354 helix_turn _helix lactose operon repressor TC41_1130 SM00859 Semialdehyde dehydrogenase, NAD binding domain TC41_1152 SM00487 DEAD-like helicases superfamily TC41_1152 SM00490 helicase superfamily c-terminal domain TC41_1157 SM00382 ATPases associated with a variety of cellular activities TC41_1162 SM00345 helix_turn_helix gluconate operon transcriptional repressor TC41_1164 SM00382 ATPases associated with a variety of cellular activities TC41_1168 SM00450 Rhodanese Homology Domain TC41_1175 SM00345 helix_turn_helix gluconate operon transcriptional repressor TC41_1175 SM00895 TC41_1175 TC41_1180 SM00914 TC41_1180 TC41_1185 SM00981 TC41_1185 TC41_1190 SM00822 TC41_1190 TC41_1195 SM00740 TC41_1195 TC41_1196 SM00740 TC41_1196 TC41_1206 SM00857 Resolvase, N terminal domain TC41_1212 SM00842 Cell division protein FtsA TC41_1213 SM00864 Tubulin/FtsZ family, GTPase domain TC41_1213 SM00865 Tubulin/FtsZ family, C-terminal domain TC41_1234 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain TC41_1235 SM00851 MGS-like domain TC41_1235 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TC41_1235 SM01209 TC41_1235 TC41_1236 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family TC41_1240 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TC41_1243 SM00831 Cation transporter/ATPase, N-terminus TC41_1245 SM01409 TC41_1245 TC41_1247 SM00487 DEAD-like helicases superfamily TC41_1247 SM00490 helicase superfamily c-terminal domain TC41_1252 SM00331 Sigma factor PP2C-like phosphatases TC41_1252 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain TC41_1253 SM00220 Serine/Threonine protein kinases, catalytic domain TC41_1253 SM00740 TC41_1253 TC41_1258 SM00487 DEAD-like helicases superfamily TC41_1258 SM00490 helicase superfamily c-terminal domain TC41_1271 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. TC41_1272 SM00822 TC41_1272 TC41_1274 SM00825 Beta-ketoacyl synthase TC41_1275 SM00358 Double-stranded RNA binding motif TC41_1275 SM00535 Ribonuclease III family TC41_1276 SM00968 SMC proteins Flexible Hinge Domain TC41_1277 SM00382 ATPases associated with a variety of cellular activities TC41_1277 SM00962 SRP54-type protein, GTPase domain TC41_1277 SM00963 SRP54-type protein, helical bundle domain TC41_1279 SM00382 ATPases associated with a variety of cellular activities TC41_1279 SM00962 SRP54-type protein, GTPase domain TC41_1279 SM00963 SRP54-type protein, helical bundle domain TC41_1288 SM00363 S4 RNA-binding domain TC41_1303 SM00382 ATPases associated with a variety of cellular activities TC41_1307 SM00881 CoA binding domain TC41_1311 SM00257 Lysin motif TC41_1314 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain TC41_1314 SM00437 Bacterial DNA topoisomerase I DNA-binding domain TC41_1314 SM00493 TC41_1314 TC41_1320 SM00382 ATPases associated with a variety of cellular activities TC41_1320 SM01086 C-terminal, D2-small domain, of ClpB protein TC41_1328 SM00382 ATPases associated with a variety of cellular activities TC41_1341 SM00448 cheY-homologous receiver domain TC41_1348 SM00382 ATPases associated with a variety of cellular activities TC41_1348 SM00962 SRP54-type protein, GTPase domain TC41_1351 SM00073 Histidine Phosphotransfer domain TC41_1351 SM00260 Two component signalling adaptor domain TC41_1351 SM00387 Histidine kinase-like ATPases TC41_1351 SM01231 TC41_1351 TC41_1352 SM00260 Two component signalling adaptor domain TC41_1365 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TC41_1366 SM00479 TC41_1366 TC41_1366 SM00481 DNA polymerase alpha chain like domain TC41_1371 SM00316 Ribosomal protein S1-like RNA-binding domain TC41_1377 SM00904 Riboflavin kinase TC41_1379 SM01387 TC41_1379 TC41_1380 SM00316 Ribosomal protein S1-like RNA-binding domain TC41_1380 SM00322 K homology RNA-binding domain TC41_1384 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TC41_1386 SM00859 Semialdehyde dehydrogenase, NAD binding domain TC41_1388 SM01130 TC41_1388 TC41_1389 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase TC41_1398 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TC41_1400 SM00849 Metallo-beta-lactamase superfamily TC41_1403 SM00382 ATPases associated with a variety of cellular activities TC41_1403 SM00843 TC41_1403 TC41_1408 SM00530 Helix-turn-helix XRE-family like proteins TC41_1411 SM00852 Probable molybdopterin binding domain TC41_1412 SM00487 DEAD-like helicases superfamily TC41_1412 SM00490 helicase superfamily c-terminal domain TC41_1413 SM00382 ATPases associated with a variety of cellular activities TC41_1415 SM00322 K homology RNA-binding domain TC41_1415 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TC41_1425 SM00729 Elongator protein 3, MiaB family, Radical SAM TC41_1427 SM00533 DNA-binding domain of DNA mismatch repair MUTS family TC41_1427 SM00534 ATPase domain of DNA mismatch repair MUTS family TC41_1428 SM00853 MutL C terminal dimerisation domain TC41_1428 SM01340 TC41_1428 TC41_1439 SM00382 ATPases associated with a variety of cellular activities TC41_1447 SM01329 TC41_1447 TC41_1458 SM00382 ATPases associated with a variety of cellular activities TC41_1464 SM00422 helix_turn_helix, mercury resistance TC41_1465 SM01230 TC41_1465 TC41_1468 SM00858 TC41_1468 TC41_1479 SM00267 diguanylate cyclase TC41_1484 SM00893 Electron transfer flavoprotein domain TC41_1485 SM00893 Electron transfer flavoprotein domain TC41_1501 SM00116 Domain in cystathionine beta-synthase and other proteins. TC41_1509 SM00345 helix_turn_helix gluconate operon transcriptional repressor TC41_1509 SM00895 TC41_1509 TC41_1516 SM00859 Semialdehyde dehydrogenase, NAD binding domain TC41_1520 SM00346 helix_turn_helix isocitrate lyase regulation TC41_1524 SM01230 TC41_1524 TC41_1535 SM00382 ATPases associated with a variety of cellular activities TC41_1546 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen TC41_1547 SM00479 TC41_1547 TC41_1547 SM00487 DEAD-like helicases superfamily TC41_1547 SM00491 TC41_1547 TC41_1559 SM00914 TC41_1559 TC41_1574 SM00363 S4 RNA-binding domain TC41_1576 SM00257 Lysin motif TC41_1578 SM00382 ATPases associated with a variety of cellular activities TC41_1583 SM00116 Domain in cystathionine beta-synthase and other proteins. TC41_1585 SM00138 Methyltransferase, chemotaxis proteins TC41_1587 SM00562 TC41_1587 TC41_1592 SM00829 Enoylreductase TC41_1596 SM01207 TC41_1596 TC41_1600 SM00316 Ribosomal protein S1-like RNA-binding domain TC41_1601 SM00563 Phosphate acyltransferases TC41_1609 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TC41_1611 SM00354 helix_turn _helix lactose operon repressor TC41_1625 SM00530 Helix-turn-helix XRE-family like proteins TC41_1626 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_1626 SM00387 Histidine kinase-like ATPases TC41_1626 SM00388 His Kinase A (phosphoacceptor) domain TC41_1627 SM00448 cheY-homologous receiver domain TC41_1627 SM00862 Transcriptional regulatory protein, C terminal TC41_1629 SM00363 S4 RNA-binding domain TC41_1644 SM00387 Histidine kinase-like ATPases TC41_1646 SM00530 Helix-turn-helix XRE-family like proteins TC41_1647 SM00936 Penicillin-binding protein 5, C-terminal domain TC41_1656 SM00729 Elongator protein 3, MiaB family, Radical SAM TC41_1659 SM00636 TC41_1659 TC41_1667 SM00448 cheY-homologous receiver domain TC41_1668 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TC41_1672 SM00363 S4 RNA-binding domain TC41_1685 SM00878 Biotin carboxylase C-terminal domain TC41_1695 SM00382 ATPases associated with a variety of cellular activities TC41_1696 SM00841 Elongation factor P, C-terminal TC41_1696 SM01185 TC41_1696 TC41_1698 SM00855 Phosphoglycerate mutase family TC41_1702 SM00487 DEAD-like helicases superfamily TC41_1702 SM00490 helicase superfamily c-terminal domain TC41_1707 SM00966 SpoVT / AbrB like domain TC41_1722 SM00052 Putative diguanylate phosphodiesterase TC41_1727 SM00411 bacterial (prokaryotic) histone like domain TC41_1728 SM00634 Bacterial Ig-like domain (group 1) TC41_1741 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TC41_1742 SM00267 diguanylate cyclase TC41_1750 SM01040 BRO family, N-terminal domain TC41_1755 SM00421 helix_turn_helix, Lux Regulon TC41_1761 SM01040 BRO family, N-terminal domain TC41_1768 SM00470 ParB-like nuclease domain TC41_1769 SM00470 ParB-like nuclease domain TC41_1778 SM00470 ParB-like nuclease domain TC41_1782 SM00487 DEAD-like helicases superfamily TC41_1782 SM00490 helicase superfamily c-terminal domain TC41_1847 SM00421 helix_turn_helix, Lux Regulon TC41_1850 SM00479 TC41_1850 TC41_1866 SM00480 DNA polymerase III beta subunit TC41_1874 SM00487 DEAD-like helicases superfamily TC41_1874 SM00490 helicase superfamily c-terminal domain TC41_1882 SM01040 BRO family, N-terminal domain TC41_1889 SM00530 Helix-turn-helix XRE-family like proteins TC41_1892 SM00530 Helix-turn-helix XRE-family like proteins TC41_1893 SM00530 Helix-turn-helix XRE-family like proteins TC41_1894 SM00530 Helix-turn-helix XRE-family like proteins TC41_1895 SM00530 Helix-turn-helix XRE-family like proteins TC41_1896 SM00530 Helix-turn-helix XRE-family like proteins TC41_1905 SM00382 ATPases associated with a variety of cellular activities TC41_1919 SM00268 Actin TC41_1924 SM01208 TC41_1924 TC41_1934 SM01004 Delta-aminolevulinic acid dehydratase TC41_1940 SM00382 ATPases associated with a variety of cellular activities TC41_1940 SM00464 Found in ATP-dependent protease La (LON) TC41_1941 SM00382 ATPases associated with a variety of cellular activities TC41_1942 SM00382 ATPases associated with a variety of cellular activities TC41_1942 SM00994 ClpX C4-type zinc finger TC41_1942 SM01086 C-terminal, D2-small domain, of ClpB protein TC41_1947 SM00347 helix_turn_helix multiple antibiotic resistance protein TC41_1952 SM00421 helix_turn_helix, Lux Regulon TC41_1955 SM00345 helix_turn_helix gluconate operon transcriptional repressor TC41_1955 SM00866 TC41_1955 TC41_1962 SM00465 GIY-YIG type nucleases (URI domain) TC41_1976 SM00347 helix_turn_helix multiple antibiotic resistance protein TC41_1981 SM00155 Phospholipase D. Active site motifs. TC41_1988 SM00849 Metallo-beta-lactamase superfamily TC41_1996 SM00382 ATPases associated with a variety of cellular activities TC41_1997 SM00382 ATPases associated with a variety of cellular activities TC41_2003 SM00382 ATPases associated with a variety of cellular activities TC41_2006 SM00257 Lysin motif TC41_2007 SM00903 Flavin reductase like domain TC41_2024 SM00926 Molybdopterin oxidoreductase Fe4S4 domain TC41_2024 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TC41_2040 SM00382 ATPases associated with a variety of cellular activities TC41_2041 SM00382 ATPases associated with a variety of cellular activities TC41_2046 SM00347 helix_turn_helix multiple antibiotic resistance protein TC41_2048 SM00382 ATPases associated with a variety of cellular activities TC41_2075 SM00387 Histidine kinase-like ATPases TC41_2075 SM00388 His Kinase A (phosphoacceptor) domain TC41_2078 SM00387 Histidine kinase-like ATPases TC41_2078 SM00388 His Kinase A (phosphoacceptor) domain TC41_2079 SM00448 cheY-homologous receiver domain TC41_2079 SM00862 Transcriptional regulatory protein, C terminal TC41_2089 SM00400 zinc finger TC41_2089 SM00493 TC41_2089 TC41_2096 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TC41_2103 SM01133 TC41_2103 TC41_2104 SM00729 Elongator protein 3, MiaB family, Radical SAM TC41_2107 SM00271 DnaJ molecular chaperone homology domain TC41_2113 SM00729 Elongator protein 3, MiaB family, Radical SAM TC41_2115 SM00838 Elongation factor G C-terminus TC41_2125 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TC41_2127 SM00529 Helix-turn-helix diphteria tox regulatory element TC41_2139 SM00732 Likely ribonuclease with RNase H fold. TC41_2141 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain TC41_2146 SM00382 ATPases associated with a variety of cellular activities TC41_2150 SM00226 Low molecular weight phosphatase family TC41_2163 SM00382 ATPases associated with a variety of cellular activities TC41_2166 SM00849 Metallo-beta-lactamase superfamily TC41_2175 SM00878 Biotin carboxylase C-terminal domain TC41_2179 SM00882 Coenzyme A transferase TC41_2180 SM00882 Coenzyme A transferase TC41_2192 SM00852 Probable molybdopterin binding domain TC41_2194 SM00257 Lysin motif TC41_2204 SM00419 helix_turn_helix, cAMP Regulatory protein TC41_2204 SM00529 Helix-turn-helix diphteria tox regulatory element TC41_2204 SM00899 TC41_2204 TC41_2212 SM00052 Putative diguanylate phosphodiesterase TC41_2212 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TC41_2212 SM00267 diguanylate cyclase TC41_2215 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TC41_2215 SM00954 Region found in RelA / SpoT proteins TC41_2224 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. TC41_2224 SM00267 diguanylate cyclase TC41_2226 SM01323 TC41_2226 TC41_2232 SM00382 ATPases associated with a variety of cellular activities TC41_2233 SM00278 Helix-hairpin-helix DNA-binding motif class 1 TC41_2241 SM00257 Lysin motif TC41_2243 SM00363 S4 RNA-binding domain TC41_2246 SM00463 Small MutS-related domain TC41_2246 SM00533 DNA-binding domain of DNA mismatch repair MUTS family TC41_2246 SM00534 ATPase domain of DNA mismatch repair MUTS family TC41_2250 SM00873 B3/4 domain TC41_2250 SM00874 tRNA synthetase B5 domain TC41_2250 SM00896 Ferredoxin-fold anticodon binding domain TC41_2254 SM01001 AIR carboxylase TC41_2255 SM01133 TC41_2255 TC41_2258 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TC41_2258 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_2261 SM00382 ATPases associated with a variety of cellular activities TC41_2263 SM00919 Malic enzyme, NAD binding domain TC41_2263 SM01274 TC41_2263 TC41_2266 SM00861 Transketolase, pyrimidine binding domain TC41_2292 SM00967 RNA 2'-O ribose methyltransferase substrate binding TC41_2299 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain TC41_2308 SM01236 TC41_2308 TC41_2311 SM00822 TC41_2311 TC41_2322 SM00357 Cold shock protein domain TC41_2342 SM00382 ATPases associated with a variety of cellular activities TC41_2345 SM00116 Domain in cystathionine beta-synthase and other proteins. TC41_2352 SM01329 TC41_2352 TC41_2365 SM00354 helix_turn _helix lactose operon repressor TC41_2366 SM00530 Helix-turn-helix XRE-family like proteins TC41_2376 SM00966 SpoVT / AbrB like domain TC41_2389 SM00858 TC41_2389 TC41_2392 SM00052 Putative diguanylate phosphodiesterase TC41_2396 SM00411 bacterial (prokaryotic) histone like domain TC41_2397 SM00634 Bacterial Ig-like domain (group 1) TC41_2408 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TC41_2409 SM00267 diguanylate cyclase TC41_2417 SM01040 BRO family, N-terminal domain TC41_2420 SM00421 helix_turn_helix, Lux Regulon TC41_2432 SM00470 ParB-like nuclease domain TC41_2438 SM00470 ParB-like nuclease domain TC41_2444 SM00470 ParB-like nuclease domain TC41_2476 SM00421 helix_turn_helix, Lux Regulon TC41_2480 SM00479 TC41_2480 TC41_2490 SM00480 DNA polymerase III beta subunit TC41_2497 SM00487 DEAD-like helicases superfamily TC41_2497 SM00490 helicase superfamily c-terminal domain TC41_2502 SM01040 BRO family, N-terminal domain TC41_2515 SM00530 Helix-turn-helix XRE-family like proteins TC41_2516 SM00530 Helix-turn-helix XRE-family like proteins TC41_2519 SM00530 Helix-turn-helix XRE-family like proteins TC41_2520 SM00857 Resolvase, N terminal domain TC41_2521 SM00257 Lysin motif TC41_2530 SM00382 ATPases associated with a variety of cellular activities TC41_2531 SM00382 ATPases associated with a variety of cellular activities TC41_2538 SM00382 ATPases associated with a variety of cellular activities TC41_2539 SM00382 ATPases associated with a variety of cellular activities TC41_2540 SM00448 cheY-homologous receiver domain TC41_2540 SM00862 Transcriptional regulatory protein, C terminal TC41_2541 SM00387 Histidine kinase-like ATPases TC41_2541 SM00388 His Kinase A (phosphoacceptor) domain TC41_2543 SM00387 Histidine kinase-like ATPases TC41_2543 SM00388 His Kinase A (phosphoacceptor) domain TC41_2544 SM00448 cheY-homologous receiver domain TC41_2544 SM00862 Transcriptional regulatory protein, C terminal TC41_2546 SM00788 Adenylosuccinate synthetase TC41_2547 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_2552 SM00342 helix_turn_helix, arabinose operon control protein TC41_2552 SM00448 cheY-homologous receiver domain TC41_2556 SM00382 ATPases associated with a variety of cellular activities TC41_2560 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TC41_2563 SM00382 ATPases associated with a variety of cellular activities TC41_2564 SM00382 ATPases associated with a variety of cellular activities TC41_2565 SM00342 helix_turn_helix, arabinose operon control protein TC41_2587 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_2595 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. TC41_2604 SM00420 helix_turn_helix, Deoxyribose operon repressor TC41_2604 SM01134 TC41_2604 TC41_2609 SM00633 Glycosyl hydrolase family 10 TC41_2611 SM00829 Enoylreductase TC41_2621 SM00244 prohibitin homologues TC41_2627 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain TC41_2627 SM01232 TC41_2627 TC41_2629 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs TC41_2629 SM00475 5'-3' exonuclease TC41_2629 SM00482 DNA polymerase A domain TC41_2630 SM00830 Chorismate mutase type II TC41_2632 SM01329 TC41_2632 TC41_2633 SM00388 His Kinase A (phosphoacceptor) domain TC41_2634 SM00448 cheY-homologous receiver domain TC41_2634 SM00862 Transcriptional regulatory protein, C terminal TC41_2640 SM00481 DNA polymerase alpha chain like domain TC41_2641 SM00116 Domain in cystathionine beta-synthase and other proteins. TC41_2655 SM00849 Metallo-beta-lactamase superfamily TC41_2658 SM00530 Helix-turn-helix XRE-family like proteins TC41_2673 SM00530 Helix-turn-helix XRE-family like proteins TC41_2675 SM00530 Helix-turn-helix XRE-family like proteins TC41_2679 SM00946 Prolyl-tRNA synthetase, C-terminal TC41_2683 SM00829 Enoylreductase TC41_2686 SM00823 Phosphopantetheine attachment site TC41_2698 SM00822 TC41_2698 TC41_2701 SM00825 Beta-ketoacyl synthase TC41_2705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TC41_2705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_2729 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TC41_2737 SM01240 TC41_2737 TC41_2738 SM00861 Transketolase, pyrimidine binding domain TC41_2748 SM00710 Parallel beta-helix repeats TC41_2755 SM00354 helix_turn _helix lactose operon repressor TC41_2756 SM00903 Flavin reductase like domain TC41_2757 SM00479 TC41_2757 TC41_2759 SM01230 TC41_2759 TC41_2762 SM00382 ATPases associated with a variety of cellular activities TC41_2763 SM00382 ATPases associated with a variety of cellular activities TC41_2771 SM00729 Elongator protein 3, MiaB family, Radical SAM TC41_2777 SM01131 TC41_2777 TC41_2802 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). TC41_2811 SM00849 Metallo-beta-lactamase superfamily TC41_2814 SM00829 Enoylreductase TC41_2822 SM00091 PAS domain TC41_2830 SM00346 helix_turn_helix isocitrate lyase regulation TC41_2844 SM00937 TC41_2844 TC41_2846 SM00957 SecA DEAD-like domain TC41_2846 SM00958 SecA preprotein cross-linking domain TC41_2862 SM00387 Histidine kinase-like ATPases TC41_2862 SM00388 His Kinase A (phosphoacceptor) domain TC41_2863 SM00448 cheY-homologous receiver domain TC41_2863 SM00862 Transcriptional regulatory protein, C terminal TC41_2864 SM00530 Helix-turn-helix XRE-family like proteins TC41_2866 SM00421 helix_turn_helix, Lux Regulon TC41_2866 SM00448 cheY-homologous receiver domain TC41_2874 SM00852 Probable molybdopterin binding domain TC41_2883 SM00363 S4 RNA-binding domain TC41_2888 SM00354 helix_turn _helix lactose operon repressor TC41_2897 SM00900 TC41_2897 TC41_2909 SM00382 ATPases associated with a variety of cellular activities TC41_2916 SM00052 Putative diguanylate phosphodiesterase TC41_2916 SM00267 diguanylate cyclase TC41_2927 SM01217 TC41_2927 TC41_2933 SM00014 Acid phosphatase homologues TC41_2943 SM00450 Rhodanese Homology Domain TC41_2943 SM00849 Metallo-beta-lactamase superfamily TC41_2944 SM00450 Rhodanese Homology Domain TC41_2947 SM00450 Rhodanese Homology Domain TC41_2952 SM00487 DEAD-like helicases superfamily TC41_2952 SM00490 helicase superfamily c-terminal domain TC41_2957 SM00857 Resolvase, N terminal domain TC41_2972 SM00344 helix_turn_helix ASNC type TC41_2975 SM00829 Enoylreductase TC41_3007 SM00646 TC41_3007 TC41_3012 SM00662 RNA polymerases D TC41_3013 SM00363 S4 RNA-binding domain TC41_3013 SM01390 TC41_3013 TC41_3017 SM00316 Ribosomal protein S1-like RNA-binding domain TC41_3030 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. TC41_3031 SM01374 TC41_3031 TC41_3035 SM00322 K homology RNA-binding domain TC41_3038 SM01382 TC41_3038 TC41_3038 SM01383 TC41_3038 TC41_3042 SM01403 TC41_3042 TC41_3044 SM00838 Elongation factor G C-terminus TC41_3044 SM00889 Elongation factor G, domain IV TC41_3048 SM00663 RNA polymerase I subunit A N-terminus TC41_3054 SM00649 Ribosomal protein L11/L12 TC41_3055 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. TC41_3055 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. TC41_3060 SM00967 RNA 2'-O ribose methyltransferase substrate binding TC41_3062 SM00840 TC41_3062 TC41_3066 SM00670 Large family of predicted nucleotide-binding domains TC41_3069 SM00382 ATPases associated with a variety of cellular activities TC41_3070 SM00382 ATPases associated with a variety of cellular activities TC41_3070 SM01086 C-terminal, D2-small domain, of ClpB protein TC41_3076 SM00382 ATPases associated with a variety of cellular activities TC41_3078 SM00421 helix_turn_helix, Lux Regulon TC41_3092 SM00382 ATPases associated with a variety of cellular activities TC41_3105 SM00226 Low molecular weight phosphatase family TC41_3116 SM00937 TC41_3116 TC41_3120 SM00357 Cold shock protein domain TC41_3120 SM00382 ATPases associated with a variety of cellular activities TC41_3120 SM00959 Rho termination factor, N-terminal domain TC41_3123 SM00448 cheY-homologous receiver domain TC41_3129 SM00797 Allophanate hydrolase subunit 2 TC41_3130 SM00796 Allophanate hydrolase subunit 1 TC41_3136 SM00829 Enoylreductase TC41_3144 SM00729 Elongator protein 3, MiaB family, Radical SAM TC41_3145 SM00851 MGS-like domain TC41_3146 SM01011 Aminopeptidase P, N-terminal domain TC41_3169 SM01207 TC41_3169 TC41_3180 SM00354 helix_turn _helix lactose operon repressor TC41_3181 SM01350 TC41_3181 TC41_3194 SM00422 helix_turn_helix, mercury resistance TC41_3197 SM00729 Elongator protein 3, MiaB family, Radical SAM TC41_3197 SM00876 Biotin and Thiamin Synthesis associated domain TC41_3200 SM00382 ATPases associated with a variety of cellular activities TC41_3201 SM00829 Enoylreductase TC41_3209 SM00267 diguanylate cyclase TC41_3211 SM00642 Alpha-amylase domain TC41_3213 SM00354 helix_turn _helix lactose operon repressor TC41_3217 SM00642 Alpha-amylase domain TC41_3222 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TC41_3225 SM00857 Resolvase, N terminal domain TC41_3240 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase TC41_3245 SM00342 helix_turn_helix, arabinose operon control protein TC41_3248 SM00938 Nitrogen regulatory protein P-II TC41_3249 SM00862 Transcriptional regulatory protein, C terminal TC41_3256 SM00813 Alpha-L-arabinofuranosidase C-terminus TC41_3260 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor TC41_3263 SM01007 Class II Aldolase and Adducin N-terminal domain TC41_3267 SM00345 helix_turn_helix gluconate operon transcriptional repressor TC41_3273 SM00271 DnaJ molecular chaperone homology domain TC41_3275 SM00052 Putative diguanylate phosphodiesterase TC41_3275 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) TC41_3275 SM00091 PAS domain TC41_3275 SM00267 diguanylate cyclase TC41_3279 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. TC41_3280 SM00849 Metallo-beta-lactamase superfamily TC41_3283 SM00091 PAS domain TC41_3283 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain TC41_3283 SM00387 Histidine kinase-like ATPases TC41_3283 SM00388 His Kinase A (phosphoacceptor) domain TC41_3284 SM00448 cheY-homologous receiver domain TC41_3284 SM00862 Transcriptional regulatory protein, C terminal TC41_3293 SM00926 Molybdopterin oxidoreductase Fe4S4 domain TC41_3300 SM00470 ParB-like nuclease domain TC41_3302 SM00470 ParB-like nuclease domain TC41_3304 SM01228 TC41_3304 TC41_3306 SM00393 Putative single-stranded nucleic acids-binding domain TC41_3306 SM01245 TC41_3306 TC41_3308 SM01234 TC41_3308