locus-tag class description GI364_00005 PF11638 DnaA N-terminal domain GI364_00005 PF00308 Bacterial dnaA protein GI364_00005 PF08299 Bacterial dnaA protein helix-turn-helix GI364_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain GI364_00010 PF02767 DNA polymerase III beta subunit, central domain GI364_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain GI364_00020 PF02463 RecF/RecN/SMC N terminal domain GI364_00025 PF04025 Domain of unknown function (DUF370) GI364_00030 PF00204 DNA gyrase B GI364_00030 PF00986 DNA gyrase B subunit, carboxyl terminus GI364_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_00030 PF01751 Toprim domain GI364_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller GI364_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A GI364_00040 PF00582 Universal stress protein family GI364_00070 PF00571 CBS domain GI364_00070 PF00478 IMP dehydrogenase / GMP reductase domain GI364_00075 PF07943 Penicillin-binding protein 5, C-terminal domain GI364_00075 PF00768 D-alanyl-D-alanine carboxypeptidase GI364_00080 PF01680 SOR/SNZ family GI364_00085 PF01174 SNO glutamine amidotransferase family GI364_00090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GI364_00090 PF02403 Seryl-tRNA synthetase N-terminal domain GI364_00105 PF00266 Aminotransferase class-V GI364_00115 PF13180 PDZ domain GI364_00145 PF00392 Bacterial regulatory proteins, gntR family GI364_00155 PF13732 Domain of unknown function (DUF4162) GI364_00155 PF00005 ABC transporter GI364_00195 PF17912 MalK OB fold domain GI364_00195 PF00005 ABC transporter GI364_00200 PF13416 Bacterial extracellular solute-binding protein GI364_00205 PF00528 Binding-protein-dependent transport system inner membrane component GI364_00210 PF00528 Binding-protein-dependent transport system inner membrane component GI364_00220 PF06445 GyrI-like small molecule binding domain GI364_00220 PF12833 Helix-turn-helix domain GI364_00245 PF00005 ABC transporter GI364_00245 PF08402 TOBE domain GI364_00250 PF00528 Binding-protein-dependent transport system inner membrane component GI364_00255 PF01547 Bacterial extracellular solute-binding protein GI364_00265 PF02743 Cache domain GI364_00265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GI364_00265 PF00672 HAMP domain GI364_00285 PF00005 ABC transporter GI364_00300 PF00557 Metallopeptidase family M24 GI364_00300 PF01321 Creatinase/Prolidase N-terminal domain GI364_00315 PF01906 Putative heavy-metal-binding GI364_00320 PF01906 Putative heavy-metal-binding GI364_00325 PF04012 PspA/IM30 family GI364_00340 PF12848 ABC transporter GI364_00340 PF16326 ABC transporter C-terminal domain GI364_00340 PF00005 ABC transporter GI364_00345 PF12706 Beta-lactamase superfamily domain GI364_00365 PF08402 TOBE domain GI364_00365 PF00005 ABC transporter GI364_00370 PF03060 Nitronate monooxygenase GI364_00385 PF00872 Transposase, Mutator family GI364_00390 PF00037 4Fe-4S binding domain GI364_00390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GI364_00390 PF00384 Molybdopterin oxidoreductase GI364_00390 PF01568 Molydopterin dinucleotide binding domain GI364_00390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GI364_00395 PF07849 Protein of unknown function (DUF1641) GI364_00415 PF08281 Sigma-70, region 4 GI364_00415 PF04542 Sigma-70 region 2 GI364_00425 PF17853 GGDEF-like domain GI364_00425 PF07905 Purine catabolism regulatory protein-like family GI364_00425 PF13556 PucR C-terminal helix-turn-helix domain GI364_00430 PF00557 Metallopeptidase family M24 GI364_00430 PF01321 Creatinase/Prolidase N-terminal domain GI364_00435 PF01053 Cys/Met metabolism PLP-dependent enzyme GI364_00440 PF01546 Peptidase family M20/M25/M40 GI364_00440 PF07687 Peptidase dimerisation domain GI364_00445 PF01842 ACT domain GI364_00445 PF03447 Homoserine dehydrogenase, NAD binding domain GI364_00445 PF00742 Homoserine dehydrogenase GI364_00450 PF00171 Aldehyde dehydrogenase family GI364_00455 PF00291 Pyridoxal-phosphate dependent enzyme GI364_00460 PF02423 Ornithine cyclodeaminase/mu-crystallin family GI364_00470 PF00528 Binding-protein-dependent transport system inner membrane component GI364_00475 PF00005 ABC transporter GI364_00480 PF00528 Binding-protein-dependent transport system inner membrane component GI364_00490 PF02146 Sir2 family GI364_00520 PF00905 Penicillin binding protein transpeptidase domain GI364_00520 PF00912 Transglycosylase GI364_00525 PF03717 Penicillin-binding Protein dimerisation domain GI364_00525 PF00905 Penicillin binding protein transpeptidase domain GI364_00530 PF00535 Glycosyl transferase family 2 GI364_00540 PF13426 PAS domain GI364_00540 PF00989 PAS fold GI364_00540 PF00512 His Kinase A (phospho-acceptor) domain GI364_00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_00540 PF13188 PAS domain GI364_00545 PF07690 Major Facilitator Superfamily GI364_00560 PF01268 Formate--tetrahydrofolate ligase GI364_00570 PF00465 Iron-containing alcohol dehydrogenase GI364_00580 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GI364_00600 PF00535 Glycosyl transferase family 2 GI364_00605 PF04138 GtrA-like protein GI364_00620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GI364_00625 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GI364_00630 PF01061 ABC-2 type transporter GI364_00635 PF08239 Bacterial SH3 domain GI364_00635 PF00005 ABC transporter GI364_00640 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GI364_00645 PF16912 Glucose dehydrogenase C-terminus GI364_00645 PF08240 Alcohol dehydrogenase GroES-like domain GI364_00650 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GI364_00660 PF01541 GIY-YIG catalytic domain GI364_00665 PF02073 Thermophilic metalloprotease (M29) GI364_00675 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain GI364_00675 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain GI364_00680 PF01619 Proline dehydrogenase GI364_00685 PF00072 Response regulator receiver domain GI364_00685 PF00158 Sigma-54 interaction domain GI364_00685 PF02954 Bacterial regulatory protein, Fis family GI364_00690 PF00171 Aldehyde dehydrogenase family GI364_00720 PF00248 Aldo/keto reductase family GI364_00725 PF04542 Sigma-70 region 2 GI364_00725 PF08281 Sigma-70, region 4 GI364_00735 PF13193 AMP-binding enzyme C-terminal domain GI364_00735 PF00501 AMP-binding enzyme GI364_00740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_00740 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_00740 PF12806 Acetyl-CoA dehydrogenase C-terminal like GI364_00740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_00750 PF13411 MerR HTH family regulatory protein GI364_00755 PF04397 LytTr DNA-binding domain GI364_00755 PF00072 Response regulator receiver domain GI364_00760 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain GI364_00760 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain GI364_00775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_00775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_00790 PF00005 ABC transporter GI364_00800 PF00701 Dihydrodipicolinate synthetase family GI364_00810 PF02790 Cytochrome C oxidase subunit II, transmembrane domain GI364_00815 PF00115 Cytochrome C and Quinol oxidase polypeptide I GI364_00820 PF00510 Cytochrome c oxidase subunit III GI364_00825 PF03626 Prokaryotic Cytochrome C oxidase subunit IV GI364_00840 PF00109 Beta-ketoacyl synthase, N-terminal domain GI364_00840 PF02801 Beta-ketoacyl synthase, C-terminal domain GI364_00855 PF00501 AMP-binding enzyme GI364_00855 PF13193 AMP-binding enzyme C-terminal domain GI364_00860 PF13193 AMP-binding enzyme C-terminal domain GI364_00860 PF00501 AMP-binding enzyme GI364_00865 PF00989 PAS fold GI364_00865 PF00512 His Kinase A (phospho-acceptor) domain GI364_00865 PF18698 Histidine kinase sensor domain GI364_00865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_00865 PF00672 HAMP domain GI364_00870 PF00072 Response regulator receiver domain GI364_00870 PF00486 Transcriptional regulatory protein, C terminal GI364_00885 PF00083 Sugar (and other) transporter GI364_00900 PF00206 Lyase GI364_00900 PF10415 Fumarase C C-terminus GI364_00910 PF02595 Glycerate kinase family GI364_00915 PF00324 Amino acid permease GI364_00920 PF04185 Phosphoesterase family GI364_00920 PF05506 Domain of unknown function (DUF756) GI364_00925 PF03069 Acetamidase/Formamidase family GI364_00930 PF00561 alpha/beta hydrolase fold GI364_00950 PF01593 Flavin containing amine oxidoreductase GI364_00965 PF00849 RNA pseudouridylate synthase GI364_00980 PF07730 Histidine kinase GI364_00985 PF00196 Bacterial regulatory proteins, luxR family GI364_00985 PF00072 Response regulator receiver domain GI364_01020 PF00583 Acetyltransferase (GNAT) family GI364_01040 PF03358 NADPH-dependent FMN reductase GI364_01050 PF10502 Signal peptidase, peptidase S26 GI364_01065 PF00440 Bacterial regulatory proteins, tetR family GI364_01075 PF02743 Cache domain GI364_01075 PF00672 HAMP domain GI364_01075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GI364_01085 PF00005 ABC transporter GI364_01085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_01090 PF00005 ABC transporter GI364_01090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_01095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_01100 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01100 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_01105 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01120 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01125 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01135 PF03717 Penicillin-binding Protein dimerisation domain GI364_01135 PF00905 Penicillin binding protein transpeptidase domain GI364_01145 PF00270 DEAD/DEAH box helicase GI364_01145 PF09382 RQC domain GI364_01145 PF00271 Helicase conserved C-terminal domain GI364_01145 PF00570 HRDC domain GI364_01145 PF16124 RecQ zinc-binding GI364_01150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_01150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_01165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_01180 PF00176 SNF2 family N-terminal domain GI364_01180 PF00271 Helicase conserved C-terminal domain GI364_01180 PF12419 SNF2 Helicase protein GI364_01190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_01190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_01190 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_01200 PF01381 Helix-turn-helix GI364_01205 PF04542 Sigma-70 region 2 GI364_01205 PF08281 Sigma-70, region 4 GI364_01235 PF04434 SWIM zinc finger GI364_01250 PF02525 Flavodoxin-like fold GI364_01255 PF00696 Amino acid kinase family GI364_01255 PF13840 ACT domain GI364_01260 PF01842 ACT domain GI364_01265 PF13840 ACT domain GI364_01265 PF00696 Amino acid kinase family GI364_01270 PF01380 SIS domain GI364_01270 PF01418 Helix-turn-helix domain, rpiR family GI364_01275 PF07075 Protein of unknown function (DUF1343) GI364_01285 PF02585 GlcNAc-PI de-N-acetylase GI364_01290 PF03702 Anhydro-N-acetylmuramic acid kinase GI364_01295 PF01869 BadF/BadG/BcrA/BcrD ATPase family GI364_01305 PF13378 Enolase C-terminal domain-like GI364_01305 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GI364_01310 PF00144 Beta-lactamase GI364_01315 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain GI364_01315 PF02129 X-Pro dipeptidyl-peptidase (S15 family) GI364_01320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_01325 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01330 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_01330 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_01335 PF00005 ABC transporter GI364_01340 PF00005 ABC transporter GI364_01340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_01345 PF01380 SIS domain GI364_01355 PF01915 Glycosyl hydrolase family 3 C-terminal domain GI364_01355 PF00933 Glycosyl hydrolase family 3 N terminal domain GI364_01365 PF01425 Amidase GI364_01370 PF03816 Cell envelope-related transcriptional attenuator domain GI364_01375 PF00459 Inositol monophosphatase family GI364_01380 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase GI364_01385 PF04321 RmlD substrate binding domain GI364_01390 PF16363 GDP-mannose 4,6 dehydratase GI364_01395 PF00483 Nucleotidyl transferase GI364_01405 PF03600 Citrate transporter GI364_01405 PF02080 TrkA-C domain GI364_01410 PF14306 PUA-like domain GI364_01410 PF01747 ATP-sulfurylase GI364_01420 PF00534 Glycosyl transferases group 1 GI364_01420 PF13439 Glycosyltransferase Family 4 GI364_01440 PF00535 Glycosyl transferase family 2 GI364_01460 PF02397 Bacterial sugar transferase GI364_01470 PF00589 Phage integrase family GI364_01485 PF00440 Bacterial regulatory proteins, tetR family GI364_01495 PF12867 DinB superfamily GI364_01505 PF08279 HTH domain GI364_01505 PF13280 WYL domain GI364_01525 PF01501 Glycosyl transferase family 8 GI364_01525 PF00535 Glycosyl transferase family 2 GI364_01530 PF03816 Cell envelope-related transcriptional attenuator domain GI364_01530 PF13399 LytR cell envelope-related transcriptional attenuator GI364_01540 PF13732 Domain of unknown function (DUF4162) GI364_01540 PF00005 ABC transporter GI364_01570 PF01325 Iron dependent repressor, N-terminal DNA binding domain GI364_01570 PF00480 ROK family GI364_01580 PF00486 Transcriptional regulatory protein, C terminal GI364_01580 PF00072 Response regulator receiver domain GI364_01585 PF00512 His Kinase A (phospho-acceptor) domain GI364_01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_01590 PF00005 ABC transporter GI364_01605 PF14849 YidC periplasmic domain GI364_01605 PF02096 60Kd inner membrane protein GI364_01615 PF07702 UTRA domain GI364_01615 PF00392 Bacterial regulatory proteins, gntR family GI364_01635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_01635 PF03466 LysR substrate binding domain GI364_01645 PF07690 Major Facilitator Superfamily GI364_01650 PF01047 MarR family GI364_01650 PF00480 ROK family GI364_01655 PF00480 ROK family GI364_01665 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01670 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01675 PF01979 Amidohydrolase family GI364_01680 PF12832 MFS_1 like family GI364_01685 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GI364_01720 PF17154 Gammaproteobacterial periplasmic sensor domain GI364_01720 PF00990 Diguanylate cyclase, GGDEF domain GI364_01720 PF00672 HAMP domain GI364_01720 PF00563 EAL domain GI364_01725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GI364_01725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GI364_01745 PF00005 ABC transporter GI364_01745 PF00664 ABC transporter transmembrane region GI364_01750 PF00664 ABC transporter transmembrane region GI364_01750 PF00005 ABC transporter GI364_01765 PF00912 Transglycosylase GI364_01765 PF00905 Penicillin binding protein transpeptidase domain GI364_01785 PF00128 Alpha amylase, catalytic domain GI364_01785 PF02806 Alpha amylase, C-terminal all-beta domain GI364_01785 PF00686 Starch binding domain GI364_01785 PF01833 IPT/TIG domain GI364_01800 PF00072 Response regulator receiver domain GI364_01805 PF01584 CheW-like domain GI364_01805 PF02895 Signal transducing histidine kinase, homodimeric domain GI364_01805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_01805 PF01627 Hpt domain GI364_01805 PF07194 P2 response regulator binding domain GI364_01820 PF07702 UTRA domain GI364_01820 PF00392 Bacterial regulatory proteins, gntR family GI364_01840 PF00491 Arginase family GI364_01845 PF01979 Amidohydrolase family GI364_01850 PF17391 Urocanase N-terminal domain GI364_01850 PF17392 Urocanase C-terminal domain GI364_01850 PF01175 Urocanase Rossmann-like domain GI364_01855 PF12833 Helix-turn-helix domain GI364_01860 PF17391 Urocanase N-terminal domain GI364_01860 PF01175 Urocanase Rossmann-like domain GI364_01860 PF17392 Urocanase C-terminal domain GI364_01865 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin GI364_01880 PF00005 ABC transporter GI364_01885 PF01757 Acyltransferase family GI364_01895 PF12802 MarR family GI364_01900 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GI364_01905 PF00753 Metallo-beta-lactamase superfamily GI364_01910 PF03576 Peptidase family S58 GI364_01920 PF00149 Calcineurin-like phosphoesterase GI364_01925 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01935 PF08402 TOBE domain GI364_01935 PF00005 ABC transporter GI364_01940 PF03466 LysR substrate binding domain GI364_01940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_01945 PF07690 Major Facilitator Superfamily GI364_01950 PF01476 LysM domain GI364_01950 PF00877 NlpC/P60 family GI364_01955 PF00497 Bacterial extracellular solute-binding proteins, family 3 GI364_01960 PF00528 Binding-protein-dependent transport system inner membrane component GI364_01965 PF00005 ABC transporter GI364_01970 PF00158 Sigma-54 interaction domain GI364_01975 PF00491 Arginase family GI364_01985 PF04199 Putative cyclase GI364_01990 PF00583 Acetyltransferase (GNAT) family GI364_01990 PF00795 Carbon-nitrogen hydrolase GI364_01995 PF00171 Aldehyde dehydrogenase family GI364_02000 PF00202 Aminotransferase class-III GI364_02005 PF00171 Aldehyde dehydrogenase family GI364_02015 PF05721 Phytanoyl-CoA dioxygenase (PhyH) GI364_02020 PF06339 Ectoine synthase GI364_02025 PF00202 Aminotransferase class-III GI364_02030 PF00583 Acetyltransferase (GNAT) family GI364_02045 PF13529 Peptidase_C39 like family GI364_02050 PF01497 Periplasmic binding protein GI364_02055 PF01717 Cobalamin-independent synthase, Catalytic domain GI364_02070 PF03707 Bacterial signalling protein N terminal repeat GI364_02070 PF00563 EAL domain GI364_02070 PF00990 Diguanylate cyclase, GGDEF domain GI364_02095 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GI364_02095 PF00437 Type II/IV secretion system protein GI364_02110 PF00483 Nucleotidyl transferase GI364_02110 PF01050 Mannose-6-phosphate isomerase GI364_02115 PF00072 Response regulator receiver domain GI364_02115 PF00486 Transcriptional regulatory protein, C terminal GI364_02120 PF00989 PAS fold GI364_02120 PF00512 His Kinase A (phospho-acceptor) domain GI364_02120 PF18698 Histidine kinase sensor domain GI364_02120 PF00672 HAMP domain GI364_02120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_02140 PF01548 Transposase GI364_02140 PF02371 Transposase IS116/IS110/IS902 family GI364_02145 PF01027 Inhibitor of apoptosis-promoting Bax1 GI364_02150 PF00326 Prolyl oligopeptidase family GI364_02150 PF07676 WD40-like Beta Propeller Repeat GI364_02160 PF13686 DsrE/DsrF/DrsH-like family GI364_02165 PF00581 Rhodanese-like domain GI364_02170 PF01925 Sulfite exporter TauE/SafE GI364_02175 PF00440 Bacterial regulatory proteins, tetR family GI364_02175 PF08359 YsiA-like protein, C-terminal region GI364_02180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_02180 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_02180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_02185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GI364_02185 PF00289 Biotin carboxylase, N-terminal domain GI364_02185 PF02785 Biotin carboxylase C-terminal domain GI364_02190 PF02436 Conserved carboxylase domain GI364_02190 PF00682 HMGL-like GI364_02190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GI364_02190 PF00364 Biotin-requiring enzyme GI364_02190 PF00289 Biotin carboxylase, N-terminal domain GI364_02190 PF02785 Biotin carboxylase C-terminal domain GI364_02195 PF01039 Carboxyl transferase domain GI364_02200 PF02913 FAD linked oxidases, C-terminal domain GI364_02200 PF01565 FAD binding domain GI364_02210 PF02585 GlcNAc-PI de-N-acetylase GI364_02220 PF00581 Rhodanese-like domain GI364_02230 PF00210 Ferritin-like domain GI364_02235 PF04172 LrgB-like family GI364_02240 PF03788 LrgA family GI364_02245 PF01227 GTP cyclohydrolase I GI364_02250 PF00892 EamA-like transporter family GI364_02265 PF00005 ABC transporter GI364_02275 PF00392 Bacterial regulatory proteins, gntR family GI364_02275 PF07729 FCD domain GI364_02280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_02285 PF00528 Binding-protein-dependent transport system inner membrane component GI364_02290 PF00528 Binding-protein-dependent transport system inner membrane component GI364_02290 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_02300 PF02417 Chromate transporter GI364_02305 PF02417 Chromate transporter GI364_02310 PF03807 NADP oxidoreductase coenzyme F420-dependent GI364_02310 PF14748 Pyrroline-5-carboxylate reductase dimerisation GI364_02320 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GI364_02320 PF01367 5'-3' exonuclease, C-terminal SAM fold GI364_02320 PF00476 DNA polymerase family A GI364_02345 PF03466 LysR substrate binding domain GI364_02345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_02350 PF00654 Voltage gated chloride channel GI364_02355 PF03699 Uncharacterised protein family (UPF0182) GI364_02365 PF13537 Glutamine amidotransferase domain GI364_02365 PF00733 Asparagine synthase GI364_02370 PF10719 Late competence development protein ComFB GI364_02375 PF14437 MafB19-like deaminase GI364_02390 PF00512 His Kinase A (phospho-acceptor) domain GI364_02390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_02390 PF00989 PAS fold GI364_02395 PF12169 DNA polymerase III subunits gamma and tau domain III GI364_02400 PF02575 YbaB/EbfC DNA-binding family GI364_02405 PF13662 Toprim domain GI364_02405 PF02132 RecR protein GI364_02420 PF14667 Polysaccharide biosynthesis C-terminal domain GI364_02420 PF01943 Polysaccharide biosynthesis protein GI364_02435 PF03949 Malic enzyme, NAD binding domain GI364_02435 PF00390 Malic enzyme, N-terminal domain GI364_02440 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GI364_02440 PF01276 Orn/Lys/Arg decarboxylase, major domain GI364_02445 PF02223 Thymidylate kinase GI364_02450 PF06153 Cyclic-di-AMP receptor GI364_02460 PF04468 PSP1 C-terminal conserved region GI364_02465 PF06156 Initiation control protein YabA GI364_02470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GI364_02475 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GI364_02475 PF18277 AbrB C-terminal domain GI364_02480 PF08264 Anticodon-binding domain of tRNA GI364_02480 PF09334 tRNA synthetases class I (M) GI364_02480 PF01588 Putative tRNA binding domain GI364_02485 PF01026 TatD related DNase GI364_02490 PF13331 Domain of unknown function (DUF4093) GI364_02490 PF13662 Toprim domain GI364_02495 PF00398 Ribosomal RNA adenine dimethylase GI364_02500 PF04308 Ribonuclease H-like GI364_02510 PF05582 YabG peptidase U57 GI364_02515 PF06257 Biofilm formation stimulator VEG GI364_02520 PF00269 Small, acid-soluble spore proteins, alpha/beta type GI364_02525 PF03575 Peptidase family S51 GI364_02530 PF08443 RimK-like ATP-grasp domain GI364_02530 PF08245 Mur ligase middle domain GI364_02530 PF02875 Mur ligase family, glutamate ligase domain GI364_02535 PF08544 GHMP kinases C terminal GI364_02535 PF00288 GHMP kinases N terminal domain GI364_02540 PF00156 Phosphoribosyl transferase domain GI364_02540 PF09182 Bacterial purine repressor, N-terminal GI364_02545 PF01042 Endoribonuclease L-PSP GI364_02550 PF04026 SpoVG GI364_02555 PF00132 Bacterial transferase hexapeptide (six repeats) GI364_02555 PF00483 Nucleotidyl transferase GI364_02560 PF14572 Phosphoribosyl synthetase-associated domain GI364_02560 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GI364_02565 PF14693 Ribosomal protein TL5, C-terminal domain GI364_02565 PF01386 Ribosomal L25p family GI364_02570 PF01195 Peptidyl-tRNA hydrolase GI364_02580 PF02559 CarD-like/TRCF domain GI364_02580 PF00271 Helicase conserved C-terminal domain GI364_02580 PF17757 UvrB interaction domain GI364_02580 PF03461 TRCF domain GI364_02580 PF00270 DEAD/DEAH box helicase GI364_02590 PF15714 Stage V sporulation protein T C-terminal, transcription factor GI364_02590 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GI364_02595 PF14667 Polysaccharide biosynthesis C-terminal domain GI364_02595 PF01943 Polysaccharide biosynthesis protein GI364_02600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GI364_02600 PF03819 MazG nucleotide pyrophosphohydrolase domain GI364_02605 PF00216 Bacterial DNA-binding protein GI364_02610 PF01479 S4 domain GI364_02615 PF07873 YabP family GI364_02630 PF00575 S1 RNA binding domain GI364_02650 PF00692 dUTPase GI364_02655 PF07228 Stage II sporulation protein E (SpoIIE) GI364_02660 PF00092 von Willebrand factor type A domain GI364_02665 PF16918 Protein kinase G tetratricopeptide repeat GI364_02665 PF16919 Protein kinase G rubredoxin domain GI364_02665 PF00069 Protein kinase domain GI364_02670 PF11734 TilS substrate C-terminal domain GI364_02670 PF01171 PP-loop family GI364_02670 PF09179 TilS substrate binding domain GI364_02675 PF00156 Phosphoribosyl transferase domain GI364_02680 PF06480 FtsH Extracellular GI364_02680 PF17862 AAA+ lid domain GI364_02680 PF01434 Peptidase family M41 GI364_02680 PF00004 ATPase family associated with various cellular activities (AAA) GI364_02685 PF01966 HD domain GI364_02685 PF11871 Domain of unknown function (DUF3391) GI364_02690 PF03309 Type III pantothenate kinase GI364_02695 PF01430 Hsp33 protein GI364_02700 PF00809 Pterin binding enzyme GI364_02705 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GI364_02710 PF01381 Helix-turn-helix GI364_02715 PF03449 Transcription elongation factor, N-terminal GI364_02715 PF01272 Transcription elongation factor, GreA/GreB, C-term GI364_02720 PF01336 OB-fold nucleic acid binding domain GI364_02720 PF00152 tRNA synthetases class II (D, K and N) GI364_02745 PF00356 Bacterial regulatory proteins, lacI family GI364_02750 PF01547 Bacterial extracellular solute-binding protein GI364_02755 PF00528 Binding-protein-dependent transport system inner membrane component GI364_02760 PF00528 Binding-protein-dependent transport system inner membrane component GI364_02765 PF00128 Alpha amylase, catalytic domain GI364_02770 PF13378 Enolase C-terminal domain-like GI364_02770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GI364_02780 PF01145 SPFH domain / Band 7 family GI364_02795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_02795 PF05384 Sensor protein DegS GI364_02795 PF07730 Histidine kinase GI364_02805 PF00072 Response regulator receiver domain GI364_02805 PF00196 Bacterial regulatory proteins, luxR family GI364_02830 PF01966 HD domain GI364_02830 PF00072 Response regulator receiver domain GI364_02835 PF00437 Type II/IV secretion system protein GI364_02850 PF00005 ABC transporter GI364_02855 PF18075 FtsX extracellular domain GI364_02855 PF02687 FtsX-like permease family GI364_02860 PF17820 PDZ domain GI364_02865 PF01618 MotA/TolQ/ExbB proton channel family GI364_02870 PF13677 Membrane MotB of proton-channel complex MotA/MotB GI364_02870 PF00691 OmpA family GI364_02875 PF00271 Helicase conserved C-terminal domain GI364_02875 PF02151 UvrB/uvrC motif GI364_02875 PF04851 Type III restriction enzyme, res subunit GI364_02875 PF17757 UvrB interaction domain GI364_02875 PF12344 Ultra-violet resistance protein B GI364_02880 PF17755 UvrA DNA-binding domain GI364_02880 PF17760 UvrA interaction domain GI364_02885 PF07905 Purine catabolism regulatory protein-like family GI364_02885 PF13556 PucR C-terminal helix-turn-helix domain GI364_02885 PF17853 GGDEF-like domain GI364_02890 PF17912 MalK OB fold domain GI364_02890 PF00005 ABC transporter GI364_02890 PF03459 TOBE domain GI364_02895 PF07475 HPr Serine kinase C-terminal domain GI364_02895 PF02603 HPr Serine kinase N terminus GI364_02900 PF01551 Peptidase family M23 GI364_02900 PF08460 Bacterial SH3 domain GI364_02905 PF00750 tRNA synthetases class I (R) GI364_02905 PF03485 Arginyl tRNA synthetase N terminal domain GI364_02905 PF05746 DALR anticodon binding domain GI364_02915 PF03144 Elongation factor Tu domain 2 GI364_02915 PF09105 Elongation factor SelB, winged helix GI364_02915 PF00009 Elongation factor Tu GTP binding domain GI364_02915 PF09106 Elongation factor SelB, winged helix GI364_02915 PF09107 Elongation factor SelB, winged helix GI364_02920 PF00293 NUDIX domain GI364_02925 PF00480 ROK family GI364_02930 PF03668 P-loop ATPase protein family GI364_02935 PF01933 Uncharacterised protein family UPF0052 GI364_02940 PF14527 WhiA LAGLIDADG-like domain GI364_02940 PF10298 WhiA N-terminal LAGLIDADG-like domain GI364_02940 PF02650 WhiA C-terminal HTH domain GI364_02945 PF00381 PTS HPr component phosphorylation site GI364_02955 PF00196 Bacterial regulatory proteins, luxR family GI364_02955 PF00072 Response regulator receiver domain GI364_02960 PF07730 Histidine kinase GI364_02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_02975 PF00005 ABC transporter GI364_02990 PF00753 Metallo-beta-lactamase superfamily GI364_02990 PF16123 Hydroxyacylglutathione hydrolase C-terminus GI364_02995 PF00730 HhH-GPD superfamily base excision DNA repair protein GI364_02995 PF14815 NUDIX domain GI364_03000 PF01027 Inhibitor of apoptosis-promoting Bax1 GI364_03005 PF13603 Leucyl-tRNA synthetase, Domain 2 GI364_03005 PF09334 tRNA synthetases class I (M) GI364_03005 PF00133 tRNA synthetases class I (I, L, M and V) GI364_03005 PF08264 Anticodon-binding domain of tRNA GI364_03010 PF00392 Bacterial regulatory proteins, gntR family GI364_03010 PF07702 UTRA domain GI364_03020 PF07690 Major Facilitator Superfamily GI364_03045 PF00271 Helicase conserved C-terminal domain GI364_03045 PF09369 Domain of unknown function (DUF1998) GI364_03045 PF00270 DEAD/DEAH box helicase GI364_03050 PF13482 RNase_H superfamily GI364_03060 PF01609 Transposase DDE domain GI364_03065 PF00873 AcrB/AcrD/AcrF family GI364_03070 PF06335 Protein of unknown function (DUF1054) GI364_03080 PF13193 AMP-binding enzyme C-terminal domain GI364_03080 PF00501 AMP-binding enzyme GI364_03090 PF10576 Iron-sulfur binding domain of endonuclease III GI364_03090 PF00633 Helix-hairpin-helix motif GI364_03090 PF00730 HhH-GPD superfamily base excision DNA repair protein GI364_03105 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_03120 PF01381 Helix-turn-helix GI364_03220 PF18273 Type III R-M EcoP15I C-terminal domain GI364_03220 PF01555 DNA methylase GI364_03265 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like GI364_03275 PF02796 Helix-turn-helix domain of resolvase GI364_03275 PF00239 Resolvase, N terminal domain GI364_03285 PF04307 LexA-binding, inner membrane-associated putative hydrolase GI364_03325 PF07581 The GLUG motif GI364_03325 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) GI364_03330 PF01209 ubiE/COQ5 methyltransferase family GI364_03355 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GI364_03405 PF00437 Type II/IV secretion system protein GI364_03435 PF00990 Diguanylate cyclase, GGDEF domain GI364_03435 PF13426 PAS domain GI364_03435 PF00563 EAL domain GI364_03465 PF00990 Diguanylate cyclase, GGDEF domain GI364_03475 PF00563 EAL domain GI364_03475 PF00360 Phytochrome region GI364_03475 PF01590 GAF domain GI364_03475 PF00990 Diguanylate cyclase, GGDEF domain GI364_03495 PF01554 MatE GI364_03505 PF00563 EAL domain GI364_03505 PF01590 GAF domain GI364_03505 PF00990 Diguanylate cyclase, GGDEF domain GI364_03505 PF00360 Phytochrome region GI364_03550 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_03555 PF05504 Spore germination B3/ GerAC like, C-terminal GI364_03575 PF00589 Phage integrase family GI364_03575 PF02899 Phage integrase, N-terminal SAM-like domain GI364_03605 PF13520 Amino acid permease GI364_03610 PF00589 Phage integrase family GI364_03615 PF01526 Tn3 transposase DDE domain GI364_03615 PF13700 Domain of unknown function (DUF4158) GI364_03630 PF07508 Recombinase GI364_03630 PF00239 Resolvase, N terminal domain GI364_03630 PF13408 Recombinase zinc beta ribbon domain GI364_03645 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_03660 PF00075 RNase H GI364_03665 PF08331 Domain of unknown function (DUF1730) GI364_03670 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GI364_03670 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GI364_03680 PF00180 Isocitrate/isopropylmalate dehydrogenase GI364_03685 PF12671 Putative amidase domain GI364_03690 PF00588 SpoU rRNA Methylase family GI364_03695 PF13419 Haloacid dehalogenase-like hydrolase GI364_03705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GI364_03705 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_03710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GI364_03710 PF02817 e3 binding domain GI364_03710 PF00364 Biotin-requiring enzyme GI364_03715 PF02779 Transketolase, pyrimidine binding domain GI364_03715 PF02780 Transketolase, C-terminal domain GI364_03720 PF00676 Dehydrogenase E1 component GI364_03730 PF06798 PrkA serine protein kinase C-terminal domain GI364_03730 PF08298 PrkA AAA domain GI364_03740 PF01925 Sulfite exporter TauE/SafE GI364_03745 PF01925 Sulfite exporter TauE/SafE GI364_03765 PF04285 Protein of unknown function (DUF444) GI364_03770 PF00158 Sigma-54 interaction domain GI364_03770 PF13426 PAS domain GI364_03770 PF02954 Bacterial regulatory protein, Fis family GI364_03775 PF00324 Amino acid permease GI364_03780 PF01212 Beta-eliminating lyase GI364_03820 PF01381 Helix-turn-helix GI364_03915 PF08281 Sigma-70, region 4 GI364_03915 PF04542 Sigma-70 region 2 GI364_03930 PF00293 NUDIX domain GI364_03970 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like GI364_03985 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_03995 PF00239 Resolvase, N terminal domain GI364_03995 PF02796 Helix-turn-helix domain of resolvase GI364_04025 PF04307 LexA-binding, inner membrane-associated putative hydrolase GI364_04060 PF00128 Alpha amylase, catalytic domain GI364_04065 PF00356 Bacterial regulatory proteins, lacI family GI364_04070 PF01547 Bacterial extracellular solute-binding protein GI364_04075 PF00528 Binding-protein-dependent transport system inner membrane component GI364_04080 PF00528 Binding-protein-dependent transport system inner membrane component GI364_04085 PF02595 Glycerate kinase family GI364_04090 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GI364_04090 PF07685 CobB/CobQ-like glutamine amidotransferase domain GI364_04095 PF07685 CobB/CobQ-like glutamine amidotransferase domain GI364_04105 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin GI364_04110 PF00300 Histidine phosphatase superfamily (branch 1) GI364_04120 PF01923 Cobalamin adenosyltransferase GI364_04130 PF01497 Periplasmic binding protein GI364_04135 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase GI364_04140 PF03186 CobD/Cbib protein GI364_04145 PF02654 Cobalamin-5-phosphate synthase GI364_04150 PF00155 Aminotransferase class I and II GI364_04155 PF00300 Histidine phosphatase superfamily (branch 1) GI364_04160 PF01546 Peptidase family M20/M25/M40 GI364_04160 PF07687 Peptidase dimerisation domain GI364_04175 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_04215 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GI364_04260 PF00990 Diguanylate cyclase, GGDEF domain GI364_04265 PF03707 Bacterial signalling protein N terminal repeat GI364_04265 PF00990 Diguanylate cyclase, GGDEF domain GI364_04265 PF00563 EAL domain GI364_04305 PF00437 Type II/IV secretion system protein GI364_04335 PF12792 CSS motif domain associated with EAL GI364_04335 PF00563 EAL domain GI364_04370 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GI364_04370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GI364_04370 PF02142 MGS-like domain GI364_04375 PF00285 Citrate synthase, C-terminal domain GI364_04380 PF12390 Selenocysteine synthase N terminal GI364_04380 PF03841 L-seryl-tRNA selenium transferase GI364_04385 PF13193 AMP-binding enzyme C-terminal domain GI364_04385 PF00501 AMP-binding enzyme GI364_04390 PF00694 Aconitase C-terminal domain GI364_04390 PF00330 Aconitase family (aconitate hydratase) GI364_04400 PF07690 Major Facilitator Superfamily GI364_04425 PF02899 Phage integrase, N-terminal SAM-like domain GI364_04425 PF00589 Phage integrase family GI364_04430 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) GI364_04430 PF01348 Type II intron maturase GI364_04435 PF04285 Protein of unknown function (DUF444) GI364_04440 PF04293 SpoVR like protein GI364_04450 PF08281 Sigma-70, region 4 GI364_04450 PF04542 Sigma-70 region 2 GI364_04500 PF08281 Sigma-70, region 4 GI364_04500 PF04542 Sigma-70 region 2 GI364_04515 PF02743 Cache domain GI364_04515 PF00672 HAMP domain GI364_04515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GI364_04535 PF01613 Flavin reductase like domain GI364_04540 PF03992 Antibiotic biosynthesis monooxygenase GI364_04555 PF08361 MAATS-type transcriptional repressor, C-terminal region GI364_04555 PF00440 Bacterial regulatory proteins, tetR family GI364_04565 PF13460 NAD(P)H-binding GI364_04575 PF07690 Major Facilitator Superfamily GI364_04580 PF17853 GGDEF-like domain GI364_04580 PF13556 PucR C-terminal helix-turn-helix domain GI364_04580 PF05651 Putative sugar diacid recognition GI364_04585 PF00202 Aminotransferase class-III GI364_04590 PF01144 Coenzyme A transferase GI364_04595 PF01144 Coenzyme A transferase GI364_04600 PF01546 Peptidase family M20/M25/M40 GI364_04600 PF07687 Peptidase dimerisation domain GI364_04605 PF02803 Thiolase, C-terminal domain GI364_04605 PF00108 Thiolase, N-terminal domain GI364_04610 PF00528 Binding-protein-dependent transport system inner membrane component GI364_04615 PF00005 ABC transporter GI364_04620 PF00497 Bacterial extracellular solute-binding proteins, family 3 GI364_04625 PF00202 Aminotransferase class-III GI364_04630 PF00171 Aldehyde dehydrogenase family GI364_04635 PF02633 Creatinine amidohydrolase GI364_04645 PF00356 Bacterial regulatory proteins, lacI family GI364_04655 PF00528 Binding-protein-dependent transport system inner membrane component GI364_04660 PF00528 Binding-protein-dependent transport system inner membrane component GI364_04660 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_04665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_04665 PF00005 ABC transporter GI364_04670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_04670 PF00005 ABC transporter GI364_04680 PF00155 Aminotransferase class I and II GI364_04690 PF00676 Dehydrogenase E1 component GI364_04695 PF02779 Transketolase, pyrimidine binding domain GI364_04695 PF02780 Transketolase, C-terminal domain GI364_04700 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GI364_04700 PF00364 Biotin-requiring enzyme GI364_04700 PF02817 e3 binding domain GI364_04710 PF01557 Fumarylacetoacetate (FAA) hydrolase family GI364_04715 PF01557 Fumarylacetoacetate (FAA) hydrolase family GI364_04720 PF00392 Bacterial regulatory proteins, gntR family GI364_04720 PF07729 FCD domain GI364_04730 PF01613 Flavin reductase like domain GI364_04735 PF00171 Aldehyde dehydrogenase family GI364_04740 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal GI364_04740 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal GI364_04745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GI364_04750 PF00701 Dihydrodipicolinate synthetase family GI364_04760 PF00083 Sugar (and other) transporter GI364_04770 PF12833 Helix-turn-helix domain GI364_04770 PF02805 Metal binding domain of Ada GI364_04775 PF00561 alpha/beta hydrolase fold GI364_04790 PF00920 Dehydratase family GI364_04795 PF17763 Glutaminase/Asparaginase C-terminal domain GI364_04795 PF00710 Asparaginase, N-terminal GI364_04800 PF01209 ubiE/COQ5 methyltransferase family GI364_04810 PF00989 PAS fold GI364_04810 PF00512 His Kinase A (phospho-acceptor) domain GI364_04810 PF18698 Histidine kinase sensor domain GI364_04810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_04810 PF00672 HAMP domain GI364_04815 PF00072 Response regulator receiver domain GI364_04815 PF00486 Transcriptional regulatory protein, C terminal GI364_04825 PF02898 Nitric oxide synthase, oxygenase domain GI364_04830 PF07690 Major Facilitator Superfamily GI364_04835 PF03793 PASTA domain GI364_04835 PF03717 Penicillin-binding Protein dimerisation domain GI364_04835 PF00905 Penicillin binding protein transpeptidase domain GI364_04840 PF00282 Pyridoxal-dependent decarboxylase conserved domain GI364_04860 PF03690 Uncharacterised protein family (UPF0160) GI364_04865 PF01209 ubiE/COQ5 methyltransferase family GI364_04875 PF00893 Small Multidrug Resistance protein GI364_04880 PF00528 Binding-protein-dependent transport system inner membrane component GI364_04885 PF00528 Binding-protein-dependent transport system inner membrane component GI364_04895 PF05362 Lon protease (S16) C-terminal proteolytic domain GI364_04895 PF13654 AAA domain GI364_04900 PF00563 EAL domain GI364_04900 PF00990 Diguanylate cyclase, GGDEF domain GI364_04900 PF03707 Bacterial signalling protein N terminal repeat GI364_04905 PF10437 Bacterial lipoate protein ligase C-terminus GI364_04905 PF03099 Biotin/lipoate A/B protein ligase family GI364_04910 PF02634 FdhD/NarQ family GI364_04920 PF07690 Major Facilitator Superfamily GI364_04925 PF02086 D12 class N6 adenine-specific DNA methyltransferase GI364_04935 PF07730 Histidine kinase GI364_04935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_04935 PF13492 GAF domain GI364_04940 PF00578 AhpC/TSA family GI364_04965 PF00293 NUDIX domain GI364_04965 PF09297 NADH pyrophosphatase zinc ribbon domain GI364_04980 PF00909 Ammonium Transporter Family GI364_04985 PF00860 Permease family GI364_04990 PF00156 Phosphoribosyl transferase domain GI364_05005 PF13302 Acetyltransferase (GNAT) domain GI364_05010 PF00440 Bacterial regulatory proteins, tetR family GI364_05015 PF00005 ABC transporter GI364_05015 PF13732 Domain of unknown function (DUF4162) GI364_05025 PF09962 Uncharacterized conserved protein (DUF2196) GI364_05030 PF00005 ABC transporter GI364_05030 PF12848 ABC transporter GI364_05035 PF00578 AhpC/TSA family GI364_05035 PF10417 C-terminal domain of 1-Cys peroxiredoxin GI364_05050 PF18152 DAHP synthase ferredoxin-like domain GI364_05050 PF00793 DAHP synthetase I family GI364_05055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_05055 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_05055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_05060 PF00501 AMP-binding enzyme GI364_05060 PF13193 AMP-binding enzyme C-terminal domain GI364_05065 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GI364_05070 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_05070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GI364_05080 PF07690 Major Facilitator Superfamily GI364_05090 PF00392 Bacterial regulatory proteins, gntR family GI364_05090 PF00155 Aminotransferase class I and II GI364_05125 PF13537 Glutamine amidotransferase domain GI364_05125 PF00733 Asparagine synthase GI364_05130 PF01053 Cys/Met metabolism PLP-dependent enzyme GI364_05135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GI364_05135 PF00672 HAMP domain GI364_05135 PF02743 Cache domain GI364_05140 PF00392 Bacterial regulatory proteins, gntR family GI364_05145 PF00005 ABC transporter GI364_05160 PF13188 PAS domain GI364_05160 PF00989 PAS fold GI364_05160 PF00512 His Kinase A (phospho-acceptor) domain GI364_05160 PF13426 PAS domain GI364_05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_05170 PF00115 Cytochrome C and Quinol oxidase polypeptide I GI364_05175 PF00072 Response regulator receiver domain GI364_05175 PF00196 Bacterial regulatory proteins, luxR family GI364_05185 PF07690 Major Facilitator Superfamily GI364_05205 PF09286 Pro-kumamolisin, activation domain GI364_05205 PF00082 Subtilase family GI364_05210 PF01070 FMN-dependent dehydrogenase GI364_05215 PF07690 Major Facilitator Superfamily GI364_05220 PF07486 Cell Wall Hydrolase GI364_05220 PF01471 Putative peptidoglycan binding domain GI364_05225 PF00581 Rhodanese-like domain GI364_05230 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_05235 PF00581 Rhodanese-like domain GI364_05235 PF00753 Metallo-beta-lactamase superfamily GI364_05250 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) GI364_05255 PF00155 Aminotransferase class I and II GI364_05280 PF00106 short chain dehydrogenase GI364_05285 PF00005 ABC transporter GI364_05300 PF13193 AMP-binding enzyme C-terminal domain GI364_05300 PF00501 AMP-binding enzyme GI364_05315 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GI364_05315 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GI364_05330 PF01609 Transposase DDE domain GI364_05335 PF03009 Glycerophosphoryl diester phosphodiesterase family GI364_05340 PF01741 Large-conductance mechanosensitive channel, MscL GI364_05345 PF01645 Conserved region in glutamate synthase GI364_05350 PF03009 Glycerophosphoryl diester phosphodiesterase family GI364_05360 PF01966 HD domain GI364_05365 PF00248 Aldo/keto reductase family GI364_05370 PF07690 Major Facilitator Superfamily GI364_05375 PF00083 Sugar (and other) transporter GI364_05385 PF00756 Putative esterase GI364_05390 PF00356 Bacterial regulatory proteins, lacI family GI364_05400 PF00528 Binding-protein-dependent transport system inner membrane component GI364_05405 PF00528 Binding-protein-dependent transport system inner membrane component GI364_05425 PF00528 Binding-protein-dependent transport system inner membrane component GI364_05430 PF08402 TOBE domain GI364_05430 PF00005 ABC transporter GI364_05435 PF00877 NlpC/P60 family GI364_05435 PF08239 Bacterial SH3 domain GI364_05435 PF01476 LysM domain GI364_05440 PF13396 Phospholipase_D-nuclease N-terminal GI364_05440 PF13091 PLD-like domain GI364_05450 PF03698 Uncharacterised protein family (UPF0180) GI364_05455 PF00905 Penicillin binding protein transpeptidase domain GI364_05455 PF03717 Penicillin-binding Protein dimerisation domain GI364_05460 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_05465 PF01209 ubiE/COQ5 methyltransferase family GI364_05470 PF00005 ABC transporter GI364_05470 PF13732 Domain of unknown function (DUF4162) GI364_05475 PF01061 ABC-2 type transporter GI364_05480 PF16736 Single Cache-like GI364_05480 PF00989 PAS fold GI364_05480 PF00512 His Kinase A (phospho-acceptor) domain GI364_05480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_05485 PF00072 Response regulator receiver domain GI364_05485 PF00486 Transcriptional regulatory protein, C terminal GI364_05490 PF00990 Diguanylate cyclase, GGDEF domain GI364_05495 PF00294 pfkB family carbohydrate kinase GI364_05500 PF00248 Aldo/keto reductase family GI364_05510 PF01638 HxlR-like helix-turn-helix GI364_05520 PF00535 Glycosyl transferase family 2 GI364_05525 PF13508 Acetyltransferase (GNAT) domain GI364_05530 PF01497 Periplasmic binding protein GI364_05535 PF01032 FecCD transport family GI364_05540 PF00005 ABC transporter GI364_05555 PF07690 Major Facilitator Superfamily GI364_05565 PF01906 Putative heavy-metal-binding GI364_05580 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_05585 PF03845 Spore germination protein GI364_05615 PF02586 SOS response associated peptidase (SRAP) GI364_05625 PF00484 Carbonic anhydrase GI364_05630 PF00512 His Kinase A (phospho-acceptor) domain GI364_05630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_05635 PF13581 Histidine kinase-like ATPase domain GI364_05655 PF12826 Helix-hairpin-helix motif GI364_05655 PF03119 NAD-dependent DNA ligase C4 zinc finger domain GI364_05655 PF01653 NAD-dependent DNA ligase adenylation domain GI364_05655 PF00533 BRCA1 C Terminus (BRCT) domain GI364_05655 PF03120 NAD-dependent DNA ligase OB-fold domain GI364_05670 PF00953 Glycosyl transferase family 4 GI364_05675 PF02686 Glu-tRNAGln amidotransferase C subunit GI364_05680 PF01425 Amidase GI364_05685 PF02934 GatB/GatE catalytic domain GI364_05685 PF02637 GatB domain GI364_05690 PF05958 tRNA (Uracil-5-)-methyltransferase GI364_05690 PF01938 TRAM domain GI364_05695 PF00512 His Kinase A (phospho-acceptor) domain GI364_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_05695 PF00989 PAS fold GI364_05695 PF13426 PAS domain GI364_05695 PF13188 PAS domain GI364_05700 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GI364_05700 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GI364_05715 PF05681 Fumarate hydratase (Fumerase) GI364_05715 PF05683 Fumarase C-terminus GI364_05735 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GI364_05740 PF01432 Peptidase family M3 GI364_05740 PF08439 Oligopeptidase F GI364_05750 PF00989 PAS fold GI364_05750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_05750 PF00512 His Kinase A (phospho-acceptor) domain GI364_05755 PF03807 NADP oxidoreductase coenzyme F420-dependent GI364_05755 PF14748 Pyrroline-5-carboxylate reductase dimerisation GI364_05760 PF04552 Sigma-54, DNA binding domain GI364_05760 PF04963 Sigma-54 factor, core binding domain GI364_05760 PF00309 Sigma-54 factor, Activator interacting domain (AID) GI364_05765 PF04198 Putative sugar-binding domain GI364_05770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GI364_05770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GI364_05775 PF00162 Phosphoglycerate kinase GI364_05780 PF00121 Triosephosphate isomerase GI364_05785 PF01676 Metalloenzyme superfamily GI364_05785 PF06415 BPG-independent PGAM N-terminus (iPGM_N) GI364_05790 PF00113 Enolase, C-terminal TIM barrel domain GI364_05790 PF03952 Enolase, N-terminal domain GI364_05795 PF03840 Preprotein translocase SecG subunit GI364_05800 PF12146 Serine aminopeptidase, S33 GI364_05805 PF00575 S1 RNA binding domain GI364_05805 PF08206 Ribonuclease B OB domain GI364_05805 PF00773 RNB domain GI364_05805 PF17876 Cold shock domain GI364_05820 PF07581 The GLUG motif GI364_05820 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) GI364_05835 PF00578 AhpC/TSA family GI364_05855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GI364_05855 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_05855 PF00403 Heavy-metal-associated domain GI364_05880 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) GI364_05880 PF01348 Type II intron maturase GI364_05890 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) GI364_05890 PF01348 Type II intron maturase GI364_05900 PF12833 Helix-turn-helix domain GI364_05900 PF06719 AraC-type transcriptional regulator N-terminus GI364_05920 PF04542 Sigma-70 region 2 GI364_05920 PF08281 Sigma-70, region 4 GI364_05945 PF04237 YjbR GI364_05950 PF07729 FCD domain GI364_05950 PF00392 Bacterial regulatory proteins, gntR family GI364_05955 PF02515 CoA-transferase family III GI364_05960 PF00682 HMGL-like GI364_05965 PF00857 Isochorismatase family GI364_05970 PF01968 Hydantoinase/oxoprolinase GI364_05970 PF05378 Hydantoinase/oxoprolinase N-terminal region GI364_05975 PF02538 Hydantoinase B/oxoprolinase GI364_05990 PF09382 RQC domain GI364_05990 PF00570 HRDC domain GI364_05990 PF00270 DEAD/DEAH box helicase GI364_05990 PF16124 RecQ zinc-binding GI364_05990 PF00271 Helicase conserved C-terminal domain GI364_05995 PF13411 MerR HTH family regulatory protein GI364_06000 PF01370 NAD dependent epimerase/dehydratase family GI364_06015 PF00196 Bacterial regulatory proteins, luxR family GI364_06015 PF00072 Response regulator receiver domain GI364_06020 PF07730 Histidine kinase GI364_06030 PF07690 Major Facilitator Superfamily GI364_06040 PF00712 DNA polymerase III beta subunit, N-terminal domain GI364_06040 PF02767 DNA polymerase III beta subunit, central domain GI364_06040 PF02768 DNA polymerase III beta subunit, C-terminal domain GI364_06045 PF00392 Bacterial regulatory proteins, gntR family GI364_06045 PF00155 Aminotransferase class I and II GI364_06060 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GI364_06060 PF00391 PEP-utilising enzyme, mobile domain GI364_06065 PF00730 HhH-GPD superfamily base excision DNA repair protein GI364_06065 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain GI364_06070 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GI364_06070 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GI364_06075 PF00963 Cohesin domain GI364_06075 PF02838 Glycosyl hydrolase family 20, domain 2 GI364_06075 PF00041 Fibronectin type III domain GI364_06075 PF00754 F5/8 type C domain GI364_06075 PF07555 beta-N-acetylglucosaminidase GI364_06100 PF00072 Response regulator receiver domain GI364_06100 PF00486 Transcriptional regulatory protein, C terminal GI364_06105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_06105 PF00672 HAMP domain GI364_06105 PF18698 Histidine kinase sensor domain GI364_06105 PF00512 His Kinase A (phospho-acceptor) domain GI364_06105 PF00989 PAS fold GI364_06110 PF00528 Binding-protein-dependent transport system inner membrane component GI364_06115 PF00528 Binding-protein-dependent transport system inner membrane component GI364_06125 PF01476 LysM domain GI364_06125 PF00704 Glycosyl hydrolases family 18 GI364_06135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_06135 PF03466 LysR substrate binding domain GI364_06145 PF07681 DoxX GI364_06150 PF00296 Luciferase-like monooxygenase GI364_06155 PF01070 FMN-dependent dehydrogenase GI364_06195 PF01925 Sulfite exporter TauE/SafE GI364_06200 PF00890 FAD binding domain GI364_06220 PF03949 Malic enzyme, NAD binding domain GI364_06220 PF00390 Malic enzyme, N-terminal domain GI364_06225 PF00248 Aldo/keto reductase family GI364_06230 PF05163 DinB family GI364_06235 PF13280 WYL domain GI364_06235 PF08279 HTH domain GI364_06245 PF02678 Pirin GI364_06245 PF05726 Pirin C-terminal cupin domain GI364_06250 PF00990 Diguanylate cyclase, GGDEF domain GI364_06260 PF00183 Hsp90 protein GI364_06270 PF06798 PrkA serine protein kinase C-terminal domain GI364_06270 PF08298 PrkA AAA domain GI364_06275 PF04285 Protein of unknown function (DUF444) GI364_06280 PF04293 SpoVR like protein GI364_06285 PF00106 short chain dehydrogenase GI364_06290 PF01339 CheB methylesterase GI364_06290 PF00072 Response regulator receiver domain GI364_06300 PF08447 PAS fold GI364_06300 PF00512 His Kinase A (phospho-acceptor) domain GI364_06300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_06300 PF00989 PAS fold GI364_06305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GI364_06305 PF17202 Single cache domain 3 GI364_06305 PF00672 HAMP domain GI364_06310 PF00990 Diguanylate cyclase, GGDEF domain GI364_06310 PF13188 PAS domain GI364_06310 PF03707 Bacterial signalling protein N terminal repeat GI364_06310 PF00563 EAL domain GI364_06335 PF00512 His Kinase A (phospho-acceptor) domain GI364_06335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_06340 PF00486 Transcriptional regulatory protein, C terminal GI364_06340 PF00072 Response regulator receiver domain GI364_06350 PF00535 Glycosyl transferase family 2 GI364_06355 PF00753 Metallo-beta-lactamase superfamily GI364_06365 PF00487 Fatty acid desaturase GI364_06370 PF00255 Glutathione peroxidase GI364_06385 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin GI364_06390 PF07849 Protein of unknown function (DUF1641) GI364_06410 PF00005 ABC transporter GI364_06415 PF00528 Binding-protein-dependent transport system inner membrane component GI364_06420 PF01183 Glycosyl hydrolases family 25 GI364_06425 PF13090 Polyphosphate kinase C-terminal domain 2 GI364_06425 PF17941 Polyphosphate kinase C-terminal domain 1 GI364_06425 PF13089 Polyphosphate kinase N-terminal domain GI364_06425 PF02503 Polyphosphate kinase middle domain GI364_06430 PF00248 Aldo/keto reductase family GI364_06435 PF03707 Bacterial signalling protein N terminal repeat GI364_06435 PF00990 Diguanylate cyclase, GGDEF domain GI364_06435 PF00563 EAL domain GI364_06440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GI364_06445 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase GI364_06445 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II GI364_06445 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg GI364_06450 PF07690 Major Facilitator Superfamily GI364_06455 PF01048 Phosphorylase superfamily GI364_06465 PF00009 Elongation factor Tu GTP binding domain GI364_06465 PF16658 Class II release factor RF3, C-terminal domain GI364_06465 PF03144 Elongation factor Tu domain 2 GI364_06480 PF03845 Spore germination protein GI364_06495 PF04545 Sigma-70, region 4 GI364_06495 PF04542 Sigma-70 region 2 GI364_06505 PF07475 HPr Serine kinase C-terminal domain GI364_06505 PF02603 HPr Serine kinase N terminus GI364_06655 PF13673 Acetyltransferase (GNAT) domain GI364_06685 PF03595 Voltage-dependent anion channel GI364_06690 PF01568 Molydopterin dinucleotide binding domain GI364_06690 PF14710 Respiratory nitrate reductase alpha N-terminal GI364_06690 PF00384 Molybdopterin oxidoreductase GI364_06695 PF14711 Respiratory nitrate reductase beta C-terminal GI364_06695 PF13247 4Fe-4S dicluster domain GI364_06705 PF02665 Nitrate reductase gamma subunit GI364_06740 PF03576 Peptidase family S58 GI364_06745 PF02608 ABC transporter substrate-binding protein PnrA-like GI364_06750 PF00005 ABC transporter GI364_06755 PF02653 Branched-chain amino acid transport system / permease component GI364_06760 PF02653 Branched-chain amino acid transport system / permease component GI364_06765 PF03851 UV-endonuclease UvdE GI364_06770 PF00563 EAL domain GI364_06770 PF13188 PAS domain GI364_06770 PF03707 Bacterial signalling protein N terminal repeat GI364_06770 PF00990 Diguanylate cyclase, GGDEF domain GI364_06775 PF01668 SmpB protein GI364_06780 PF01593 Flavin containing amine oxidoreductase GI364_06800 PF00571 CBS domain GI364_06810 PF13538 UvrD-like helicase C-terminal domain GI364_06825 PF02910 Fumarate reductase flavoprotein C-term GI364_06825 PF00890 FAD binding domain GI364_06830 PF13085 2Fe-2S iron-sulfur cluster binding domain GI364_06830 PF13183 4Fe-4S dicluster domain GI364_06845 PF17746 SfsA N-terminal OB domain GI364_06845 PF03749 Sugar fermentation stimulation protein RE domain GI364_06850 PF00557 Metallopeptidase family M24 GI364_06850 PF05195 Aminopeptidase P, N-terminal domain GI364_06855 PF08546 Ketopantoate reductase PanE/ApbA C terminal GI364_06855 PF02558 Ketopantoate reductase PanE/ApbA GI364_06860 PF10431 C-terminal, D2-small domain, of ClpB protein GI364_06860 PF00004 ATPase family associated with various cellular activities (AAA) GI364_06860 PF17871 AAA lid domain GI364_06860 PF07724 AAA domain (Cdc48 subfamily) GI364_06865 PF07690 Major Facilitator Superfamily GI364_06870 PF02583 Metal-sensitive transcriptional repressor GI364_06880 PF04239 Protein of unknown function (DUF421) GI364_06895 PF02254 TrkA-N domain GI364_06895 PF02080 TrkA-C domain GI364_06895 PF00999 Sodium/hydrogen exchanger family GI364_06925 PF01425 Amidase GI364_06950 PF00561 alpha/beta hydrolase fold GI364_06975 PF00005 ABC transporter GI364_06985 PF01037 Lrp/AsnC ligand binding domain GI364_06990 PF00528 Binding-protein-dependent transport system inner membrane component GI364_06995 PF00528 Binding-protein-dependent transport system inner membrane component GI364_06995 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_07000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_07000 PF00005 ABC transporter GI364_07005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_07005 PF00005 ABC transporter GI364_07010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_07015 PF04951 D-aminopeptidase GI364_07020 PF01470 Pyroglutamyl peptidase GI364_07025 PF13529 Peptidase_C39 like family GI364_07040 PF00860 Permease family GI364_07050 PF01638 HxlR-like helix-turn-helix GI364_07060 PF01238 Phosphomannose isomerase type I GI364_07070 PF00291 Pyridoxal-phosphate dependent enzyme GI364_07085 PF00465 Iron-containing alcohol dehydrogenase GI364_07090 PF00694 Aconitase C-terminal domain GI364_07090 PF00330 Aconitase family (aconitate hydratase) GI364_07100 PF07690 Major Facilitator Superfamily GI364_07105 PF01040 UbiA prenyltransferase family GI364_07110 PF00202 Aminotransferase class-III GI364_07120 PF01791 DeoC/LacD family aldolase GI364_07125 PF04551 GcpE protein GI364_07140 PF13393 Histidyl-tRNA synthetase GI364_07145 PF01634 ATP phosphoribosyltransferase GI364_07155 PF00815 Histidinol dehydrogenase GI364_07160 PF00475 Imidazoleglycerol-phosphate dehydratase GI364_07165 PF00117 Glutamine amidotransferase class-I GI364_07170 PF00977 Histidine biosynthesis protein GI364_07175 PF00977 Histidine biosynthesis protein GI364_07180 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase GI364_07180 PF01502 Phosphoribosyl-AMP cyclohydrolase GI364_07195 PF03551 Transcriptional regulator PadR-like family GI364_07205 PF05163 DinB family GI364_07215 PF01810 LysE type translocator GI364_07225 PF00005 ABC transporter GI364_07235 PF02779 Transketolase, pyrimidine binding domain GI364_07235 PF02780 Transketolase, C-terminal domain GI364_07235 PF00456 Transketolase, thiamine diphosphate binding domain GI364_07240 PF00106 short chain dehydrogenase GI364_07245 PF00440 Bacterial regulatory proteins, tetR family GI364_07250 PF03466 LysR substrate binding domain GI364_07250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_07255 PF00899 ThiF family GI364_07270 PF13419 Haloacid dehalogenase-like hydrolase GI364_07275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GI364_07275 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain GI364_07280 PF04199 Putative cyclase GI364_07285 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain GI364_07285 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain GI364_07290 PF00581 Rhodanese-like domain GI364_07300 PF02074 Carboxypeptidase Taq (M32) metallopeptidase GI364_07305 PF00085 Thioredoxin GI364_07310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_07310 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_07310 PF08028 Acyl-CoA dehydrogenase, C-terminal domain GI364_07315 PF13193 AMP-binding enzyme C-terminal domain GI364_07315 PF00501 AMP-binding enzyme GI364_07320 PF01053 Cys/Met metabolism PLP-dependent enzyme GI364_07325 PF00742 Homoserine dehydrogenase GI364_07325 PF01842 ACT domain GI364_07325 PF03447 Homoserine dehydrogenase, NAD binding domain GI364_07340 PF00501 AMP-binding enzyme GI364_07345 PF00580 UvrD/REP helicase N-terminal domain GI364_07345 PF13361 UvrD-like helicase C-terminal domain GI364_07360 PF03352 Methyladenine glycosylase GI364_07365 PF04070 Domain of unknown function (DUF378) GI364_07375 PF02796 Helix-turn-helix domain of resolvase GI364_07375 PF00239 Resolvase, N terminal domain GI364_07380 PF00480 ROK family GI364_07390 PF00528 Binding-protein-dependent transport system inner membrane component GI364_07395 PF00528 Binding-protein-dependent transport system inner membrane component GI364_07405 PF07470 Glycosyl Hydrolase Family 88 GI364_07410 PF04962 KduI/IolB family GI364_07420 PF01081 KDPG and KHG aldolase GI364_07425 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GI364_07435 PF03631 Virulence factor BrkB GI364_07440 PF02566 OsmC-like protein GI364_07445 PF02152 Dihydroneopterin aldolase GI364_07450 PF10776 Protein of unknown function (DUF2600) GI364_07460 PF05343 M42 glutamyl aminopeptidase GI364_07465 PF00350 Dynamin family GI364_07470 PF00350 Dynamin family GI364_07475 PF17820 PDZ domain GI364_07475 PF13180 PDZ domain GI364_07490 PF02687 FtsX-like permease family GI364_07490 PF12704 MacB-like periplasmic core domain GI364_07495 PF00005 ABC transporter GI364_07515 PF01522 Polysaccharide deacetylase GI364_07520 PF04545 Sigma-70, region 4 GI364_07520 PF04542 Sigma-70 region 2 GI364_07525 PF13408 Recombinase zinc beta ribbon domain GI364_07525 PF00239 Resolvase, N terminal domain GI364_07525 PF07508 Recombinase GI364_07530 PF00581 Rhodanese-like domain GI364_07530 PF00753 Metallo-beta-lactamase superfamily GI364_07540 PF12801 4Fe-4S binding domain GI364_07545 PF04545 Sigma-70, region 4 GI364_07545 PF04542 Sigma-70 region 2 GI364_07555 PF12706 Beta-lactamase superfamily domain GI364_07555 PF00753 Metallo-beta-lactamase superfamily GI364_07560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GI364_07560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GI364_07565 PF01979 Amidohydrolase family GI364_07585 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GI364_07585 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GI364_07595 PF01180 Dihydroorotate dehydrogenase GI364_07600 PF08281 Sigma-70, region 4 GI364_07600 PF04542 Sigma-70 region 2 GI364_07615 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GI364_07615 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GI364_07620 PF01883 Iron-sulfur cluster assembly protein GI364_07625 PF00005 ABC transporter GI364_07630 PF01458 Uncharacterized protein family (UPF0051) GI364_07635 PF00266 Aminotransferase class-V GI364_07640 PF01592 NifU-like N terminal domain GI364_07645 PF01458 Uncharacterized protein family (UPF0051) GI364_07650 PF00355 Rieske [2Fe-2S] domain GI364_07655 PF02082 Transcriptional regulator GI364_07665 PF00578 AhpC/TSA family GI364_07670 PF00578 AhpC/TSA family GI364_07675 PF08359 YsiA-like protein, C-terminal region GI364_07675 PF00440 Bacterial regulatory proteins, tetR family GI364_07680 PF01012 Electron transfer flavoprotein domain GI364_07685 PF00766 Electron transfer flavoprotein FAD-binding domain GI364_07685 PF01012 Electron transfer flavoprotein domain GI364_07690 PF00155 Aminotransferase class I and II GI364_07705 PF02954 Bacterial regulatory protein, Fis family GI364_07705 PF13188 PAS domain GI364_07705 PF00158 Sigma-54 interaction domain GI364_07710 PF01053 Cys/Met metabolism PLP-dependent enzyme GI364_07715 PF00221 Aromatic amino acid lyase GI364_07720 PF00206 Lyase GI364_07720 PF10415 Fumarase C C-terminus GI364_07725 PF00326 Prolyl oligopeptidase family GI364_07725 PF07676 WD40-like Beta Propeller Repeat GI364_07730 PF00459 Inositol monophosphatase family GI364_07735 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain GI364_07735 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain GI364_07735 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family GI364_07740 PF02401 LytB protein GI364_07750 PF01619 Proline dehydrogenase GI364_07755 PF01645 Conserved region in glutamate synthase GI364_07760 PF00534 Glycosyl transferases group 1 GI364_07760 PF08323 Starch synthase catalytic domain GI364_07765 PF14398 YheC/D like ATP-grasp GI364_07770 PF02911 Formyl transferase, C-terminal domain GI364_07770 PF00551 Formyl transferase GI364_07770 PF01370 NAD dependent epimerase/dehydratase family GI364_07780 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GI364_07780 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GI364_07780 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GI364_07785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_07785 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_07795 PF01370 NAD dependent epimerase/dehydratase family GI364_07800 PF00132 Bacterial transferase hexapeptide (six repeats) GI364_07805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GI364_07830 PF02350 UDP-N-acetylglucosamine 2-epimerase GI364_07835 PF02719 Polysaccharide biosynthesis protein GI364_07855 PF00535 Glycosyl transferase family 2 GI364_07870 PF00535 Glycosyl transferase family 2 GI364_07875 PF01321 Creatinase/Prolidase N-terminal domain GI364_07875 PF00557 Metallopeptidase family M24 GI364_07890 PF14034 Sporulation protein YtrH GI364_07895 PF00271 Helicase conserved C-terminal domain GI364_07895 PF00176 SNF2 family N-terminal domain GI364_07895 PF12419 SNF2 Helicase protein GI364_07920 PF02811 PHP domain GI364_07920 PF07733 Bacterial DNA polymerase III alpha NTPase domain GI364_07920 PF14579 Helix-hairpin-helix motif GI364_07920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GI364_07930 PF01569 PAP2 superfamily GI364_07940 PF01230 HIT domain GI364_07945 PF01063 Amino-transferase class IV GI364_07950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GI364_07950 PF00378 Enoyl-CoA hydratase/isomerase GI364_07950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GI364_07955 PF00108 Thiolase, N-terminal domain GI364_07955 PF02803 Thiolase, C-terminal domain GI364_07960 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_07960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_07960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_07965 PF06725 3D domain GI364_07970 PF01261 Xylose isomerase-like TIM barrel GI364_07980 PF01642 Methylmalonyl-CoA mutase GI364_07980 PF02310 B12 binding domain GI364_07985 PF07690 Major Facilitator Superfamily GI364_07990 PF00037 4Fe-4S binding domain GI364_08005 PF05193 Peptidase M16 inactive domain GI364_08010 PF05193 Peptidase M16 inactive domain GI364_08010 PF00675 Insulinase (Peptidase family M16) GI364_08020 PF00899 ThiF family GI364_08030 PF04055 Radical SAM superfamily GI364_08035 PF01242 6-pyruvoyl tetrahydropterin synthase GI364_08040 PF00860 Permease family GI364_08045 PF00294 pfkB family carbohydrate kinase GI364_08060 PF07685 CobB/CobQ-like glutamine amidotransferase domain GI364_08065 PF08353 Domain of unknown function (DUF1727) GI364_08065 PF08245 Mur ligase middle domain GI364_08075 PF13185 GAF domain GI364_08085 PF00488 MutS domain V GI364_08085 PF01713 Smr domain GI364_08090 PF00753 Metallo-beta-lactamase superfamily GI364_08095 PF01098 Cell cycle protein GI364_08105 PF01098 Cell cycle protein GI364_08110 PF13508 Acetyltransferase (GNAT) domain GI364_08115 PF07690 Major Facilitator Superfamily GI364_08120 PF08741 YwhD family GI364_08125 PF01276 Orn/Lys/Arg decarboxylase, major domain GI364_08125 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GI364_08130 PF00578 AhpC/TSA family GI364_08135 PF01521 Iron-sulphur cluster biosynthesis GI364_08140 PF01966 HD domain GI364_08145 PF09335 SNARE associated Golgi protein GI364_08155 PF08827 Domain of unknown function (DUF1805) GI364_08160 PF02681 Divergent PAP2 family GI364_08170 PF00293 NUDIX domain GI364_08175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GI364_08180 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase GI364_08180 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II GI364_08180 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg GI364_08190 PF06725 3D domain GI364_08195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_08195 PF00005 ABC transporter GI364_08200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_08200 PF00005 ABC transporter GI364_08205 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_08205 PF00528 Binding-protein-dependent transport system inner membrane component GI364_08210 PF00528 Binding-protein-dependent transport system inner membrane component GI364_08215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_08235 PF02899 Phage integrase, N-terminal SAM-like domain GI364_08235 PF00589 Phage integrase family GI364_08285 PF00990 Diguanylate cyclase, GGDEF domain GI364_08295 PF17938 Tetracyclin repressor-like, C-terminal domain GI364_08295 PF00440 Bacterial regulatory proteins, tetR family GI364_08300 PF00753 Metallo-beta-lactamase superfamily GI364_08335 PF00892 EamA-like transporter family GI364_08340 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_08340 PF00403 Heavy-metal-associated domain GI364_08340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GI364_08345 PF01638 HxlR-like helix-turn-helix GI364_08350 PF07681 DoxX GI364_08355 PF00085 Thioredoxin GI364_08360 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_08360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GI364_08375 PF00892 EamA-like transporter family GI364_08380 PF03358 NADPH-dependent FMN reductase GI364_08385 PF00106 short chain dehydrogenase GI364_08395 PF00317 Ribonucleotide reductase, all-alpha domain GI364_08395 PF02867 Ribonucleotide reductase, barrel domain GI364_08395 PF03477 ATP cone domain GI364_08400 PF00268 Ribonucleotide reductase, small chain GI364_08405 PF03006 Haemolysin-III related GI364_08450 PF02384 N-6 DNA Methylase GI364_08450 PF12161 HsdM N-terminal domain GI364_08455 PF01420 Type I restriction modification DNA specificity domain GI364_08505 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GI364_08505 PF18277 AbrB C-terminal domain GI364_08585 PF02146 Sir2 family GI364_08605 PF04607 Region found in RelA / SpoT proteins GI364_08605 PF02824 TGS domain GI364_08605 PF13291 ACT domain GI364_08610 PF01435 Peptidase family M48 GI364_08640 PF02146 Sir2 family GI364_08645 PF03747 ADP-ribosylglycohydrolase GI364_08650 PF13280 WYL domain GI364_08650 PF08279 HTH domain GI364_08660 PF00580 UvrD/REP helicase N-terminal domain GI364_08660 PF12705 PD-(D/E)XK nuclease superfamily GI364_08660 PF13361 UvrD-like helicase C-terminal domain GI364_08670 PF01636 Phosphotransferase enzyme family GI364_08680 PF00440 Bacterial regulatory proteins, tetR family GI364_08680 PF16859 Tetracyclin repressor-like, C-terminal domain GI364_08685 PF07905 Purine catabolism regulatory protein-like family GI364_08685 PF17853 GGDEF-like domain GI364_08685 PF13556 PucR C-terminal helix-turn-helix domain GI364_08690 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin GI364_08730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_08730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_08735 PF01547 Bacterial extracellular solute-binding protein GI364_08740 PF00528 Binding-protein-dependent transport system inner membrane component GI364_08745 PF00528 Binding-protein-dependent transport system inner membrane component GI364_08750 PF00392 Bacterial regulatory proteins, gntR family GI364_08750 PF07702 UTRA domain GI364_08760 PF00365 Phosphofructokinase GI364_08765 PF01116 Fructose-bisphosphate aldolase class-II GI364_08770 PF00171 Aldehyde dehydrogenase family GI364_08775 PF01842 ACT domain GI364_08775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GI364_08775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GI364_08780 PF08666 SAF domain GI364_08785 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus GI364_08790 PF02615 Malate/L-lactate dehydrogenase GI364_08795 PF07729 FCD domain GI364_08795 PF00392 Bacterial regulatory proteins, gntR family GI364_08820 PF03575 Peptidase family S51 GI364_08830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GI364_08855 PF01593 Flavin containing amine oxidoreductase GI364_08865 PF00392 Bacterial regulatory proteins, gntR family GI364_08870 PF03450 CO dehydrogenase flavoprotein C-terminal domain GI364_08870 PF00941 FAD binding domain in molybdopterin dehydrogenase GI364_08875 PF00111 2Fe-2S iron-sulfur cluster binding domain GI364_08875 PF01799 [2Fe-2S] binding domain GI364_08880 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase GI364_08880 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain GI364_08910 PF01557 Fumarylacetoacetate (FAA) hydrolase family GI364_08920 PF01494 FAD binding domain GI364_08925 PF00266 Aminotransferase class-V GI364_08930 PF00324 Amino acid permease GI364_08940 PF13802 Galactose mutarotase-like GI364_08940 PF17137 Domain of unknown function (DUF5110) GI364_08940 PF16338 Domain of unknown function (DUF4968) GI364_08940 PF01055 Glycosyl hydrolases family 31 GI364_08950 PF08281 Sigma-70, region 4 GI364_08950 PF04542 Sigma-70 region 2 GI364_08960 PF07690 Major Facilitator Superfamily GI364_08965 PF00480 ROK family GI364_08965 PF01325 Iron dependent repressor, N-terminal DNA binding domain GI364_08970 PF01547 Bacterial extracellular solute-binding protein GI364_08975 PF00528 Binding-protein-dependent transport system inner membrane component GI364_08980 PF00528 Binding-protein-dependent transport system inner membrane component GI364_08990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_08990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_09010 PF04851 Type III restriction enzyme, res subunit GI364_09010 PF00271 Helicase conserved C-terminal domain GI364_09040 PF16990 Carbohydrate binding module (family 35) GI364_09040 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain GI364_09040 PF02837 Glycosyl hydrolases family 2, sugar binding domain GI364_09040 PF00703 Glycosyl hydrolases family 2 GI364_09045 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GI364_09045 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch GI364_09045 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GI364_09050 PF02233 NAD(P) transhydrogenase beta subunit GI364_09055 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_09055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_09070 PF00480 ROK family GI364_09080 PF01261 Xylose isomerase-like TIM barrel GI364_09110 PF01380 SIS domain GI364_09110 PF01418 Helix-turn-helix domain, rpiR family GI364_09115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_09120 PF00528 Binding-protein-dependent transport system inner membrane component GI364_09125 PF00528 Binding-protein-dependent transport system inner membrane component GI364_09125 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_09130 PF00005 ABC transporter GI364_09130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_09135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_09135 PF00005 ABC transporter GI364_09140 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase GI364_09145 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GI364_09150 PF00480 ROK family GI364_09155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_09155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_09165 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_09165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_09190 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_09190 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_09195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_09195 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_09200 PF00356 Bacterial regulatory proteins, lacI family GI364_09210 PF03480 Bacterial extracellular solute-binding protein, family 7 GI364_09215 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GI364_09215 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component GI364_09220 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GI364_09225 PF00701 Dihydrodipicolinate synthetase family GI364_09230 PF07882 L-fucose isomerase, second N-terminal domain GI364_09230 PF02952 L-fucose isomerase, C-terminal domain GI364_09230 PF07881 L-fucose isomerase, first N-terminal domain GI364_09235 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GI364_09235 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GI364_09240 PF07690 Major Facilitator Superfamily GI364_09245 PF01842 ACT domain GI364_09245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GI364_09245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GI364_09250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GI364_09250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GI364_09250 PF00205 Thiamine pyrophosphate enzyme, central domain GI364_09255 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GI364_09255 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GI364_09270 PF02547 Queuosine biosynthesis protein GI364_09275 PF00149 Calcineurin-like phosphoesterase GI364_09275 PF12320 Type 5 capsule protein repressor C-terminal domain GI364_09280 PF13476 AAA domain GI364_09285 PF00474 Sodium:solute symporter family GI364_09295 PF08241 Methyltransferase domain GI364_09305 PF00753 Metallo-beta-lactamase superfamily GI364_09315 PF02810 SEC-C motif GI364_09315 PF07517 SecA DEAD-like domain GI364_09315 PF07516 SecA Wing and Scaffold domain GI364_09315 PF01043 SecA preprotein cross-linking domain GI364_09320 PF03301 Tryptophan 2,3-dioxygenase GI364_09325 PF00266 Aminotransferase class-V GI364_09330 PF04199 Putative cyclase GI364_09350 PF02954 Bacterial regulatory protein, Fis family GI364_09350 PF13426 PAS domain GI364_09350 PF00158 Sigma-54 interaction domain GI364_09355 PF01799 [2Fe-2S] binding domain GI364_09355 PF00111 2Fe-2S iron-sulfur cluster binding domain GI364_09355 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase GI364_09355 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain GI364_09360 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_09360 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GI364_09380 PF04055 Radical SAM superfamily GI364_09380 PF06463 Molybdenum Cofactor Synthesis C GI364_09385 PF14535 AMP-binding enzyme C-terminal domain GI364_09385 PF00501 AMP-binding enzyme GI364_09390 PF02625 XdhC and CoxI family GI364_09390 PF13478 XdhC Rossmann domain GI364_09405 PF12146 Serine aminopeptidase, S33 GI364_09420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GI364_09420 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase GI364_09420 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II GI364_09420 PF10371 Domain of unknown function GI364_09420 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg GI364_09425 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II GI364_09425 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg GI364_09430 PF08141 Small acid-soluble spore protein H family GI364_09455 PF01566 Natural resistance-associated macrophage protein GI364_09460 PF01134 Glucose inhibited division protein A GI364_09460 PF13932 GidA associated domain GI364_09515 PF00117 Glutamine amidotransferase class-I GI364_09520 PF00425 chorismate binding enzyme GI364_09520 PF04715 Anthranilate synthase component I, N terminal region GI364_09530 PF00589 Phage integrase family GI364_09530 PF02899 Phage integrase, N-terminal SAM-like domain GI364_09615 PF07827 KNTase C-terminal domain GI364_09645 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GI364_09645 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GI364_09650 PF00455 DeoR C terminal sensor domain GI364_09650 PF08220 DeoR-like helix-turn-helix domain GI364_09660 PF02733 Dak1 domain GI364_09665 PF02734 DAK2 domain GI364_09670 PF02502 Ribose/Galactose Isomerase GI364_09675 PF01638 HxlR-like helix-turn-helix GI364_09695 PF02628 Cytochrome oxidase assembly protein GI364_09720 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain GI364_09720 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain GI364_09725 PF00486 Transcriptional regulatory protein, C terminal GI364_09725 PF00072 Response regulator receiver domain GI364_09735 PF06574 FAD synthetase GI364_09755 PF13180 PDZ domain GI364_09760 PF08240 Alcohol dehydrogenase GroES-like domain GI364_09760 PF00107 Zinc-binding dehydrogenase GI364_09765 PF17853 GGDEF-like domain GI364_09765 PF13556 PucR C-terminal helix-turn-helix domain GI364_09765 PF07905 Purine catabolism regulatory protein-like family GI364_09775 PF00005 ABC transporter GI364_09775 PF12704 MacB-like periplasmic core domain GI364_09775 PF02687 FtsX-like permease family GI364_09780 PF12704 MacB-like periplasmic core domain GI364_09780 PF00005 ABC transporter GI364_09780 PF02687 FtsX-like permease family GI364_09790 PF12838 4Fe-4S dicluster domain GI364_09790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GI364_09790 PF00384 Molybdopterin oxidoreductase GI364_09790 PF01568 Molydopterin dinucleotide binding domain GI364_09790 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GI364_09810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_09810 PF03466 LysR substrate binding domain GI364_09820 PF01212 Beta-eliminating lyase GI364_09830 PF01476 LysM domain GI364_09830 PF00704 Glycosyl hydrolases family 18 GI364_09835 PF00155 Aminotransferase class I and II GI364_09840 PF01037 Lrp/AsnC ligand binding domain GI364_09850 PF07690 Major Facilitator Superfamily GI364_09860 PF00999 Sodium/hydrogen exchanger family GI364_09860 PF03471 Transporter associated domain GI364_09860 PF02080 TrkA-C domain GI364_09865 PF13380 CoA binding domain GI364_09875 PF02774 Semialdehyde dehydrogenase, dimerisation domain GI364_09875 PF01118 Semialdehyde dehydrogenase, NAD binding domain GI364_09880 PF00696 Amino acid kinase family GI364_09885 PF00202 Aminotransferase class-III GI364_09895 PF01493 GXGXG motif GI364_09895 PF04898 Glutamate synthase central domain GI364_09895 PF00310 Glutamine amidotransferases class-II GI364_09895 PF01645 Conserved region in glutamate synthase GI364_09900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GI364_09900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GI364_09905 PF00764 Arginosuccinate synthase GI364_09910 PF14698 Argininosuccinate lyase C-terminal GI364_09910 PF00206 Lyase GI364_09915 PF00696 Amino acid kinase family GI364_09915 PF13840 ACT domain GI364_09920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GI364_09920 PF01842 ACT domain GI364_09920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GI364_09925 PF00266 Aminotransferase class-V GI364_09950 PF06949 Protein of unknown function (DUF1292) GI364_09995 PF00574 Clp protease GI364_10005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GI364_10005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GI364_10015 PF00266 Aminotransferase class-V GI364_10020 PF02568 Thiamine biosynthesis protein (ThiI) GI364_10020 PF02926 THUMP domain GI364_10035 PF05504 Spore germination B3/ GerAC like, C-terminal GI364_10050 PF00682 HMGL-like GI364_10055 PF00378 Enoyl-CoA hydratase/isomerase GI364_10060 PF10079 Bacillithiol biosynthesis BshC GI364_10065 PF02381 MraZ protein, putative antitoxin-like GI364_10070 PF01795 MraW methylase family GI364_10080 PF03793 PASTA domain GI364_10080 PF00905 Penicillin binding protein transpeptidase domain GI364_10080 PF03717 Penicillin-binding Protein dimerisation domain GI364_10085 PF00905 Penicillin binding protein transpeptidase domain GI364_10085 PF03717 Penicillin-binding Protein dimerisation domain GI364_10085 PF03793 PASTA domain GI364_10090 PF01225 Mur ligase family, catalytic domain GI364_10090 PF08245 Mur ligase middle domain GI364_10090 PF02875 Mur ligase family, glutamate ligase domain GI364_10095 PF00953 Glycosyl transferase family 4 GI364_10095 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 GI364_10100 PF08245 Mur ligase middle domain GI364_10100 PF02875 Mur ligase family, glutamate ligase domain GI364_10105 PF01098 Cell cycle protein GI364_10110 PF04101 Glycosyltransferase family 28 C-terminal domain GI364_10110 PF03033 Glycosyltransferase family 28 N-terminal domain GI364_10115 PF01565 FAD binding domain GI364_10115 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain GI364_10120 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GI364_10125 PF08478 POTRA domain, FtsQ-type GI364_10140 PF06947 Protein of unknown function (DUF1290) GI364_10145 PF02491 SHS2 domain inserted in FTSA GI364_10150 PF12327 FtsZ family, C-terminal domain GI364_10150 PF00091 Tubulin/FtsZ family, GTPase domain GI364_10155 PF03419 Sporulation factor SpoIIGA GI364_10160 PF04545 Sigma-70, region 4 GI364_10160 PF04542 Sigma-70 region 2 GI364_10165 PF04542 Sigma-70 region 2 GI364_10165 PF04539 Sigma-70 region 3 GI364_10165 PF04545 Sigma-70, region 4 GI364_10170 PF05239 PRC-barrel domain GI364_10175 PF02578 Multi-copper polyphenol oxidoreductase laccase GI364_10180 PF01168 Alanine racemase, N-terminal domain GI364_10185 PF02325 YGGT family GI364_10190 PF01479 S4 domain GI364_10190 PF17774 Putative RNA-binding domain in YlmH GI364_10195 PF05103 DivIVA protein GI364_10200 PF01258 Prokaryotic dksA/traR C4-type zinc finger GI364_10205 PF01252 Signal peptidase (SPase) II GI364_10210 PF01479 S4 domain GI364_10210 PF00849 RNA pseudouridylate synthase GI364_10215 PF00156 Phosphoribosyl transferase domain GI364_10220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GI364_10220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GI364_10225 PF01979 Amidohydrolase family GI364_10230 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GI364_10230 PF00117 Glutamine amidotransferase class-I GI364_10235 PF02142 MGS-like domain GI364_10235 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GI364_10235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GI364_10240 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GI364_10245 PF00156 Phosphoribosyl transferase domain GI364_10255 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GI364_10255 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GI364_10265 PF05670 NFACT protein RNA binding domain GI364_10270 PF00689 Cation transporting ATPase, C-terminus GI364_10270 PF00690 Cation transporter/ATPase, N-terminus GI364_10275 PF03755 YicC-like family, N-terminal region GI364_10275 PF08340 Domain of unknown function (DUF1732) GI364_10280 PF04025 Domain of unknown function (DUF370) GI364_10285 PF00625 Guanylate kinase GI364_10290 PF01192 RNA polymerase Rpb6 GI364_10295 PF02441 Flavoprotein GI364_10295 PF04127 DNA / pantothenate metabolism flavoprotein GI364_10300 PF00271 Helicase conserved C-terminal domain GI364_10300 PF18074 Primosomal protein N C-terminal domain GI364_10300 PF04851 Type III restriction enzyme, res subunit GI364_10300 PF17764 3′ DNA-binding domain (3′BD) GI364_10300 PF18319 PriA DNA helicase Cys-rich region (CRR) domain GI364_10305 PF01327 Polypeptide deformylase GI364_10310 PF02911 Formyl transferase, C-terminal domain GI364_10310 PF00551 Formyl transferase GI364_10315 PF01189 16S rRNA methyltransferase RsmB/F GI364_10315 PF01029 NusB family GI364_10320 PF04055 Radical SAM superfamily GI364_10330 PF00069 Protein kinase domain GI364_10330 PF03793 PASTA domain GI364_10335 PF16745 RsgA N-terminal domain GI364_10335 PF03193 RsgA GTPase GI364_10340 PF00834 Ribulose-phosphate 3 epimerase family GI364_10345 PF08183 Stage V sporulation protein family GI364_10350 PF00830 Ribosomal L28 family GI364_10355 PF03780 Asp23 family, cell envelope-related function GI364_10360 PF13684 Dihydroxyacetone kinase family GI364_10360 PF02734 DAK2 domain GI364_10365 PF00270 DEAD/DEAH box helicase GI364_10365 PF17191 RecG wedge domain GI364_10365 PF00271 Helicase conserved C-terminal domain GI364_10370 PF00269 Small, acid-soluble spore proteins, alpha/beta type GI364_10375 PF02666 Phosphatidylserine decarboxylase GI364_10385 PF00534 Glycosyl transferases group 1 GI364_10385 PF13439 Glycosyltransferase Family 4 GI364_10405 PF01467 Cytidylyltransferase-like GI364_10410 PF01734 Patatin-like phospholipase GI364_10420 PF01783 Ribosomal L32p protein family GI364_10430 PF02504 Fatty acid synthesis protein GI364_10435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GI364_10435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GI364_10440 PF00698 Acyl transferase domain GI364_10450 PF00550 Phosphopantetheine attachment site GI364_10455 PF00109 Beta-ketoacyl synthase, N-terminal domain GI364_10455 PF02801 Beta-ketoacyl synthase, C-terminal domain GI364_10460 PF00035 Double-stranded RNA binding motif GI364_10460 PF14622 Ribonuclease-III-like GI364_10465 PF06470 SMC proteins Flexible Hinge Domain GI364_10465 PF02463 RecF/RecN/SMC N terminal domain GI364_10470 PF00448 SRP54-type protein, GTPase domain GI364_10470 PF02881 SRP54-type protein, helical bundle domain GI364_10475 PF04297 Putative helix-turn-helix protein, YlxM / p13 like GI364_10480 PF00448 SRP54-type protein, GTPase domain GI364_10480 PF02881 SRP54-type protein, helical bundle domain GI364_10480 PF02978 Signal peptide binding domain GI364_10485 PF00886 Ribosomal protein S16 GI364_10500 PF05239 PRC-barrel domain GI364_10500 PF01782 RimM N-terminal domain GI364_10505 PF01746 tRNA (Guanine-1)-methyltransferase GI364_10530 PF01609 Transposase DDE domain GI364_10540 PF01479 S4 domain GI364_10540 PF00849 RNA pseudouridylate synthase GI364_10550 PF02803 Thiolase, C-terminal domain GI364_10550 PF00108 Thiolase, N-terminal domain GI364_10555 PF00106 short chain dehydrogenase GI364_10560 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_10560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_10560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_10565 PF02515 CoA-transferase family III GI364_10570 PF00248 Aldo/keto reductase family GI364_10580 PF01551 Peptidase family M23 GI364_10595 PF03061 Thioesterase superfamily GI364_10605 PF01245 Ribosomal protein L19 GI364_10610 PF01926 50S ribosome-binding GTPase GI364_10615 PF01351 Ribonuclease HII GI364_10630 PF02021 Uncharacterised protein family UPF0102 GI364_10635 PF13335 Magnesium chelatase, subunit ChlI C-terminal GI364_10635 PF01078 Magnesium chelatase, subunit ChlI GI364_10645 PF08442 ATP-grasp domain GI364_10645 PF00549 CoA-ligase GI364_10650 PF02629 CoA binding domain GI364_10650 PF00549 CoA-ligase GI364_10655 PF02481 DNA recombination-mediator protein A GI364_10655 PF17782 DprA winged helix domain GI364_10660 PF01751 Toprim domain GI364_10660 PF01396 Topoisomerase DNA binding C4 zinc finger GI364_10660 PF01131 DNA topoisomerase GI364_10665 PF01134 Glucose inhibited division protein A GI364_10670 PF02899 Phage integrase, N-terminal SAM-like domain GI364_10670 PF00589 Phage integrase family GI364_10675 PF00227 Proteasome subunit GI364_10680 PF07724 AAA domain (Cdc48 subfamily) GI364_10680 PF10431 C-terminal, D2-small domain, of ClpB protein GI364_10685 PF00460 Flagella basal body rod protein GI364_10695 PF00460 Flagella basal body rod protein GI364_10695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GI364_10700 PF02049 Flagellar hook-basal body complex protein FliE GI364_10705 PF08345 Flagellar M-ring protein C-terminal GI364_10705 PF01514 Secretory protein of YscJ/FliF family GI364_10710 PF14841 FliG middle domain GI364_10710 PF14842 FliG N-terminal domain GI364_10710 PF01706 FliG C-terminal domain GI364_10720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GI364_10720 PF18269 T3SS EscN ATPase C-terminal domain GI364_10720 PF02874 ATP synthase alpha/beta family, beta-barrel domain GI364_10750 PF00460 Flagella basal body rod protein GI364_10750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GI364_10765 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GI364_10765 PF02154 Flagellar motor switch protein FliM GI364_10770 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GI364_10770 PF04509 CheC-like family GI364_10775 PF00072 Response regulator receiver domain GI364_10785 PF00813 FliP family GI364_10790 PF01313 Bacterial export proteins, family 3 GI364_10795 PF01311 Bacterial export proteins, family 1 GI364_10800 PF01312 FlhB HrpN YscU SpaS Family GI364_10805 PF00771 FHIPEP family GI364_10810 PF00448 SRP54-type protein, GTPase domain GI364_10815 PF10609 NUBPL iron-transfer P-loop NTPase GI364_10820 PF01584 CheW-like domain GI364_10825 PF04509 CheC-like family GI364_10830 PF03975 CheD chemotactic sensory transduction GI364_10840 PF00318 Ribosomal protein S2 GI364_10845 PF00889 Elongation factor TS GI364_10850 PF00696 Amino acid kinase family GI364_10855 PF01765 Ribosome recycling factor GI364_10860 PF01255 Putative undecaprenyl diphosphate synthase GI364_10870 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain GI364_10870 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase GI364_10870 PF13288 DXP reductoisomerase C-terminal domain GI364_10875 PF02163 Peptidase family M50 GI364_10875 PF13180 PDZ domain GI364_10880 PF03129 Anticodon binding domain GI364_10880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GI364_10880 PF04073 Aminoacyl-tRNA editing domain GI364_10885 PF11490 DNA polymerase III polC-type N-terminus II GI364_10885 PF00929 Exonuclease GI364_10885 PF02811 PHP domain GI364_10885 PF07733 Bacterial DNA polymerase III alpha NTPase domain GI364_10885 PF14579 Helix-hairpin-helix motif GI364_10885 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GI364_10885 PF14480 DNA polymerase III polC-type N-terminus I GI364_10890 PF00800 Prephenate dehydratase GI364_10910 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_10915 PF01645 Conserved region in glutamate synthase GI364_10915 PF13187 4Fe-4S dicluster domain GI364_10920 PF00679 Elongation factor G C-terminus GI364_10920 PF03144 Elongation factor Tu domain 2 GI364_10920 PF14492 Elongation Factor G, domain II GI364_10920 PF00009 Elongation factor Tu GTP binding domain GI364_10925 PF02576 RimP N-terminal domain GI364_10925 PF17384 RimP C-terminal SH3 domain GI364_10930 PF13184 NusA-like KH domain GI364_10930 PF08529 NusA N-terminal domain GI364_10930 PF00575 S1 RNA binding domain GI364_10935 PF04296 Protein of unknown function (DUF448) GI364_10945 PF00009 Elongation factor Tu GTP binding domain GI364_10945 PF11987 Translation-initiation factor 2 GI364_10945 PF04760 Translation initiation factor IF-2, N-terminal region GI364_10950 PF02033 Ribosome-binding factor A GI364_10955 PF01368 DHH family GI364_10955 PF02833 DHHA2 domain GI364_10960 PF01509 TruB family pseudouridylate synthase (N terminal domain) GI364_10960 PF09142 tRNA Pseudouridine synthase II, C terminal GI364_10960 PF16198 tRNA pseudouridylate synthase B C-terminal domain GI364_10965 PF01687 Riboflavin kinase GI364_10965 PF06574 FAD synthetase GI364_10975 PF00312 Ribosomal protein S15 GI364_10980 PF03725 3' exoribonuclease family, domain 2 GI364_10980 PF01138 3' exoribonuclease family, domain 1 GI364_10980 PF00575 S1 RNA binding domain GI364_10980 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain GI364_10980 PF00013 KH domain GI364_10985 PF01522 Polysaccharide deacetylase GI364_10990 PF05193 Peptidase M16 inactive domain GI364_10990 PF00675 Insulinase (Peptidase family M16) GI364_10995 PF00692 dUTPase GI364_11010 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GI364_11010 PF16924 Dipicolinate synthase subunit A N-terminal domain GI364_11020 PF02441 Flavoprotein GI364_11025 PF02774 Semialdehyde dehydrogenase, dimerisation domain GI364_11025 PF01118 Semialdehyde dehydrogenase, NAD binding domain GI364_11030 PF00696 Amino acid kinase family GI364_11030 PF13840 ACT domain GI364_11035 PF00701 Dihydrodipicolinate synthetase family GI364_11040 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GI364_11040 PF17770 Ribonuclease J C-terminal domain GI364_11040 PF00753 Metallo-beta-lactamase superfamily GI364_11045 PF00574 Clp protease GI364_11055 PF01580 FtsK/SpoIIIE family GI364_11055 PF17854 FtsK alpha domain GI364_11055 PF09397 Ftsk gamma domain GI364_11075 PF11868 Protein of unknown function (DUF3388) GI364_11080 PF13464 Domain of unknown function (DUF4115) GI364_11085 PF04461 Protein of unknown function (DUF520) GI364_11090 PF01066 CDP-alcohol phosphatidyltransferase GI364_11095 PF02464 Competence-damaged protein GI364_11095 PF18146 Damage-inducible protein CinA KH domain GI364_11095 PF00994 Probable molybdopterin binding domain GI364_11100 PF00270 DEAD/DEAH box helicase GI364_11100 PF00271 Helicase conserved C-terminal domain GI364_11105 PF00154 recA bacterial DNA recombination protein GI364_11110 PF02631 RecX family GI364_11115 PF00013 KH domain GI364_11115 PF12072 Domain of unknown function (DUF3552) GI364_11115 PF01966 HD domain GI364_11120 PF13277 YmdB-like protein GI364_11125 PF04232 Stage V sporulation protein S (SpoVS) GI364_11130 PF01244 Membrane dipeptidase (Peptidase family M19) GI364_11135 PF13408 Recombinase zinc beta ribbon domain GI364_11135 PF07508 Recombinase GI364_11135 PF00239 Resolvase, N terminal domain GI364_11160 PF01381 Helix-turn-helix GI364_11195 PF02463 RecF/RecN/SMC N terminal domain GI364_11295 PF03838 Recombination protein U GI364_11450 PF01757 Acyltransferase family GI364_11475 PF01183 Glycosyl hydrolases family 25 GI364_11485 PF10628 Outer spore coat protein E (CotE) GI364_11495 PF14398 YheC/D like ATP-grasp GI364_11510 PF07508 Recombinase GI364_11510 PF00239 Resolvase, N terminal domain GI364_11510 PF13408 Recombinase zinc beta ribbon domain GI364_11520 PF00563 EAL domain GI364_11520 PF00990 Diguanylate cyclase, GGDEF domain GI364_11520 PF03707 Bacterial signalling protein N terminal repeat GI364_11540 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_11555 PF01209 ubiE/COQ5 methyltransferase family GI364_11560 PF14398 YheC/D like ATP-grasp GI364_11570 PF00919 Uncharacterized protein family UPF0004 GI364_11570 PF01938 TRAM domain GI364_11570 PF04055 Radical SAM superfamily GI364_11580 PF05190 MutS family domain IV GI364_11580 PF05192 MutS domain III GI364_11580 PF00488 MutS domain V GI364_11580 PF05188 MutS domain II GI364_11580 PF01624 MutS domain I GI364_11585 PF01119 DNA mismatch repair protein, C-terminal domain GI364_11585 PF08676 MutL C terminal dimerisation domain GI364_11590 PF04445 Putative SAM-dependent methyltransferase GI364_11600 PF17209 Hfq protein GI364_11670 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_11680 PF17866 AAA lid domain GI364_11680 PF00004 ATPase family associated with various cellular activities (AAA) GI364_11700 PF01926 50S ribosome-binding GTPase GI364_11700 PF13167 GTP-binding GTPase N-terminal GI364_11700 PF16360 GTP-binding GTPase Middle Region GI364_11705 PF06838 Methionine gamma-lyase GI364_11710 PF13411 MerR HTH family regulatory protein GI364_11715 PF03951 Glutamine synthetase, beta-Grasp domain GI364_11715 PF00120 Glutamine synthetase, catalytic domain GI364_11740 PF00717 Peptidase S24-like GI364_11740 PF01726 LexA DNA binding domain GI364_11745 PF01476 LysM domain GI364_11745 PF05257 CHAP domain GI364_11750 PF02574 Homocysteine S-methyltransferase GI364_11750 PF02965 Vitamin B12 dependent methionine synthase, activation domain GI364_11750 PF02607 B12 binding domain GI364_11750 PF02310 B12 binding domain GI364_11750 PF00809 Pterin binding enzyme GI364_11755 PF02219 Methylenetetrahydrofolate reductase GI364_11755 PF02574 Homocysteine S-methyltransferase GI364_11770 PF03129 Anticodon binding domain GI364_11770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GI364_11785 PF07690 Major Facilitator Superfamily GI364_11790 PF13193 AMP-binding enzyme C-terminal domain GI364_11790 PF00501 AMP-binding enzyme GI364_11790 PF16177 Acetyl-coenzyme A synthetase N-terminus GI364_11815 PF13545 Crp-like helix-turn-helix domain GI364_11815 PF00027 Cyclic nucleotide-binding domain GI364_11820 PF01883 Iron-sulfur cluster assembly protein GI364_11840 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_11855 PF01206 Sulfurtransferase TusA GI364_11855 PF11823 Protein of unknown function (DUF3343) GI364_11865 PF00324 Amino acid permease GI364_11870 PF04294 VanW like protein GI364_11890 PF10437 Bacterial lipoate protein ligase C-terminus GI364_11890 PF03099 Biotin/lipoate A/B protein ligase family GI364_11895 PF01625 Peptide methionine sulfoxide reductase GI364_11915 PF01476 LysM domain GI364_11915 PF03734 L,D-transpeptidase catalytic domain GI364_11930 PF13249 Squalene-hopene cyclase N-terminal domain GI364_11930 PF13243 Squalene-hopene cyclase C-terminal domain GI364_11940 PF00557 Metallopeptidase family M24 GI364_11950 PF03061 Thioesterase superfamily GI364_11955 PF01965 DJ-1/PfpI family GI364_11965 PF03176 MMPL family GI364_11995 PF00144 Beta-lactamase GI364_12000 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_12015 PF01521 Iron-sulphur cluster biosynthesis GI364_12020 PF00293 NUDIX domain GI364_12025 PF12800 4Fe-4S binding domain GI364_12025 PF00037 4Fe-4S binding domain GI364_12030 PF07943 Penicillin-binding protein 5, C-terminal domain GI364_12030 PF00768 D-alanyl-D-alanine carboxypeptidase GI364_12035 PF00733 Asparagine synthase GI364_12035 PF13537 Glutamine amidotransferase domain GI364_12045 PF02424 ApbE family GI364_12060 PF07690 Major Facilitator Superfamily GI364_12065 PF02535 ZIP Zinc transporter GI364_12075 PF03109 ABC1 family GI364_12090 PF01411 tRNA synthetases class II (A) GI364_12090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GI364_12090 PF02272 DHHA1 domain GI364_12095 PF00485 Phosphoribulokinase / Uridine kinase family GI364_12100 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GI364_12115 PF00152 tRNA synthetases class II (D, K and N) GI364_12115 PF01336 OB-fold nucleic acid binding domain GI364_12120 PF17862 AAA+ lid domain GI364_12120 PF00004 ATPase family associated with various cellular activities (AAA) GI364_12120 PF01434 Peptidase family M41 GI364_12135 PF14084 Protein of unknown function (DUF4264) GI364_12140 PF01975 Survival protein SurE GI364_12150 PF01979 Amidohydrolase family GI364_12155 PF01048 Phosphorylase superfamily GI364_12160 PF01068 ATP dependent DNA ligase domain GI364_12165 PF13298 DNA polymerase Ligase (LigD) GI364_12165 PF04679 ATP dependent DNA ligase C terminal region GI364_12165 PF01068 ATP dependent DNA ligase domain GI364_12170 PF02735 Ku70/Ku80 beta-barrel domain GI364_12175 PF00929 Exonuclease GI364_12175 PF13307 Helicase C-terminal domain GI364_12175 PF04851 Type III restriction enzyme, res subunit GI364_12185 PF03099 Biotin/lipoate A/B protein ligase family GI364_12185 PF02237 Biotin protein ligase C terminal domain GI364_12190 PF13735 tRNA nucleotidyltransferase domain 2 putative GI364_12190 PF12627 Probable RNA and SrmB- binding site of polymerase A GI364_12190 PF01743 Poly A polymerase head domain GI364_12195 PF13439 Glycosyltransferase Family 4 GI364_12195 PF00534 Glycosyl transferases group 1 GI364_12200 PF02142 MGS-like domain GI364_12205 PF01113 Dihydrodipicolinate reductase, N-terminus GI364_12205 PF05173 Dihydrodipicolinate reductase, C-terminus GI364_12215 PF03819 MazG nucleotide pyrophosphohydrolase domain GI364_12220 PF07670 Nucleoside recognition GI364_12225 PF02673 Bacitracin resistance protein BacA GI364_12235 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GI364_12235 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GI364_12240 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GI364_12240 PF00032 Cytochrome b(C-terminal)/b6/petD GI364_12245 PF00033 Cytochrome b/b6/petB GI364_12255 PF08864 UPF0302 domain GI364_12255 PF08858 IDEAL domain GI364_12275 PF18152 DAHP synthase ferredoxin-like domain GI364_12275 PF00793 DAHP synthetase I family GI364_12280 PF00290 Tryptophan synthase alpha chain GI364_12285 PF00291 Pyridoxal-phosphate dependent enzyme GI364_12290 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GI364_12295 PF00218 Indole-3-glycerol phosphate synthase GI364_12300 PF02885 Glycosyl transferase family, helical bundle domain GI364_12300 PF00591 Glycosyl transferase family, a/b domain GI364_12305 PF07736 Chorismate mutase type I GI364_12310 PF01761 3-dehydroquinate synthase GI364_12315 PF01264 Chorismate synthase GI364_12320 PF00857 Isochorismatase family GI364_12325 PF05343 M42 glutamyl aminopeptidase GI364_12330 PF05343 M42 glutamyl aminopeptidase GI364_12335 PF05343 M42 glutamyl aminopeptidase GI364_12340 PF00849 RNA pseudouridylate synthase GI364_12340 PF01479 S4 domain GI364_12360 PF16363 GDP-mannose 4,6 dehydratase GI364_12365 PF00574 Clp protease GI364_12370 PF04542 Sigma-70 region 2 GI364_12370 PF12680 SnoaL-like domain GI364_12370 PF08281 Sigma-70, region 4 GI364_12390 PF00005 ABC transporter GI364_12390 PF00664 ABC transporter transmembrane region GI364_12395 PF00005 ABC transporter GI364_12395 PF00664 ABC transporter transmembrane region GI364_12400 PF04239 Protein of unknown function (DUF421) GI364_12405 PF03705 CheR methyltransferase, all-alpha domain GI364_12405 PF01739 CheR methyltransferase, SAM binding domain GI364_12415 PF00334 Nucleoside diphosphate kinase GI364_12420 PF00348 Polyprenyl synthetase GI364_12430 PF02081 Tryptophan RNA-binding attenuator protein GI364_12440 PF09547 Stage IV sporulation protein A (spore_IV_A) GI364_12445 PF01597 Glycine cleavage H-protein GI364_12450 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GI364_12450 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GI364_12455 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GI364_12455 PF01926 50S ribosome-binding GTPase GI364_12465 PF00575 S1 RNA binding domain GI364_12475 PF02224 Cytidylate kinase GI364_12490 PF03413 Peptidase propeptide and YPEB domain GI364_12490 PF14620 YpeB sporulation GI364_12495 PF01471 Putative peptidoglycan binding domain GI364_12495 PF07486 Cell Wall Hydrolase GI364_12505 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GI364_12505 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GI364_12510 PF05389 Negative regulator of genetic competence (MecA) GI364_12515 PF01546 Peptidase family M20/M25/M40 GI364_12520 PF00356 Bacterial regulatory proteins, lacI family GI364_12530 PF00580 UvrD/REP helicase N-terminal domain GI364_12530 PF13361 UvrD-like helicase C-terminal domain GI364_12530 PF00580 UvrD/REP helicase N-terminal domain GI364_12530 PF13361 UvrD-like helicase C-terminal domain GI364_12540 PF01209 ubiE/COQ5 methyltransferase family GI364_12550 PF00877 NlpC/P60 family GI364_12550 PF01476 LysM domain GI364_12555 PF12867 DinB superfamily GI364_12560 PF01370 NAD dependent epimerase/dehydratase family GI364_12565 PF00155 Aminotransferase class I and II GI364_12585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GI364_12585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GI364_12585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GI364_12585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GI364_12590 PF06165 Glycosyltransferase family 36 GI364_12590 PF10091 Putative glucoamylase GI364_12590 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain GI364_12595 PF08240 Alcohol dehydrogenase GroES-like domain GI364_12595 PF00107 Zinc-binding dehydrogenase GI364_12600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_12600 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_12600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_12605 PF13193 AMP-binding enzyme C-terminal domain GI364_12605 PF00501 AMP-binding enzyme GI364_12610 PF00550 Phosphopantetheine attachment site GI364_12620 PF13193 AMP-binding enzyme C-terminal domain GI364_12620 PF00501 AMP-binding enzyme GI364_12625 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GI364_12630 PF02625 XdhC and CoxI family GI364_12630 PF13478 XdhC Rossmann domain GI364_12645 PF03450 CO dehydrogenase flavoprotein C-terminal domain GI364_12645 PF00941 FAD binding domain in molybdopterin dehydrogenase GI364_12650 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase GI364_12650 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain GI364_12655 PF00111 2Fe-2S iron-sulfur cluster binding domain GI364_12655 PF01799 [2Fe-2S] binding domain GI364_12665 PF03636 Glycosyl hydrolase family 65, N-terminal domain GI364_12665 PF03633 Glycosyl hydrolase family 65, C-terminal domain GI364_12665 PF03632 Glycosyl hydrolase family 65 central catalytic domain GI364_12670 PF07849 Protein of unknown function (DUF1641) GI364_12675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GI364_12675 PF00384 Molybdopterin oxidoreductase GI364_12675 PF01568 Molydopterin dinucleotide binding domain GI364_12675 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GI364_12675 PF12838 4Fe-4S dicluster domain GI364_12685 PF01906 Putative heavy-metal-binding GI364_12690 PF01906 Putative heavy-metal-binding GI364_12695 PF01613 Flavin reductase like domain GI364_12700 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GI364_12700 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GI364_12705 PF00171 Aldehyde dehydrogenase family GI364_12710 PF14535 AMP-binding enzyme C-terminal domain GI364_12710 PF00501 AMP-binding enzyme GI364_12715 PF01883 Iron-sulfur cluster assembly protein GI364_12730 PF05138 Phenylacetic acid catabolic protein GI364_12740 PF17932 Tetracyclin repressor-like, C-terminal domain GI364_12740 PF00440 Bacterial regulatory proteins, tetR family GI364_12745 PF00384 Molybdopterin oxidoreductase GI364_12745 PF01568 Molydopterin dinucleotide binding domain GI364_12745 PF00037 4Fe-4S binding domain GI364_12745 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GI364_12745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GI364_12750 PF07690 Major Facilitator Superfamily GI364_12760 PF00501 AMP-binding enzyme GI364_12760 PF13193 AMP-binding enzyme C-terminal domain GI364_12775 PF04012 PspA/IM30 family GI364_12785 PF07885 Ion channel GI364_12785 PF02254 TrkA-N domain GI364_12805 PF13360 PQQ-like domain GI364_12805 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GI364_12815 PF03372 Endonuclease/Exonuclease/phosphatase family GI364_12820 PF13180 PDZ domain GI364_12820 PF17820 PDZ domain GI364_12840 PF13367 PrsW family intramembrane metalloprotease GI364_12855 PF02146 Sir2 family GI364_12870 PF18698 Histidine kinase sensor domain GI364_12870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_12870 PF00672 HAMP domain GI364_12870 PF00989 PAS fold GI364_12870 PF00512 His Kinase A (phospho-acceptor) domain GI364_12875 PF00486 Transcriptional regulatory protein, C terminal GI364_12875 PF00072 Response regulator receiver domain GI364_12890 PF00849 RNA pseudouridylate synthase GI364_12890 PF01479 S4 domain GI364_12895 PF07670 Nucleoside recognition GI364_12900 PF07670 Nucleoside recognition GI364_12905 PF09579 Sporulation protein YtfJ (Spore_YtfJ) GI364_12915 PF04079 Segregation and condensation complex subunit ScpB GI364_12920 PF02616 Segregation and condensation protein ScpA GI364_12925 PF02163 Peptidase family M50 GI364_12940 PF03862 SpoVAC/SpoVAEB sporulation membrane protein GI364_12945 PF07451 Stage V sporulation protein AD (SpoVAD) GI364_12950 PF03862 SpoVAC/SpoVAEB sporulation membrane protein GI364_12955 PF04545 Sigma-70, region 4 GI364_12955 PF04539 Sigma-70 region 3 GI364_12955 PF04542 Sigma-70 region 2 GI364_12960 PF13581 Histidine kinase-like ATPase domain GI364_12965 PF01740 STAS domain GI364_12975 PF07943 Penicillin-binding protein 5, C-terminal domain GI364_12975 PF00768 D-alanyl-D-alanine carboxypeptidase GI364_12985 PF01676 Metalloenzyme superfamily GI364_12990 PF02899 Phage integrase, N-terminal SAM-like domain GI364_12990 PF00589 Phage integrase family GI364_13005 PF01944 Stage II sporulation protein M GI364_13015 PF00293 NUDIX domain GI364_13020 PF00324 Amino acid permease GI364_13025 PF01546 Peptidase family M20/M25/M40 GI364_13025 PF07687 Peptidase dimerisation domain GI364_13030 PF01039 Carboxyl transferase domain GI364_13035 PF01642 Methylmalonyl-CoA mutase GI364_13035 PF02310 B12 binding domain GI364_13040 PF01642 Methylmalonyl-CoA mutase GI364_13040 PF02310 B12 binding domain GI364_13045 PF03099 Biotin/lipoate A/B protein ligase family GI364_13050 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family GI364_13050 PF04055 Radical SAM superfamily GI364_13055 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GI364_13055 PF00364 Biotin-requiring enzyme GI364_13055 PF02817 e3 binding domain GI364_13060 PF02780 Transketolase, C-terminal domain GI364_13060 PF02779 Transketolase, pyrimidine binding domain GI364_13065 PF00676 Dehydrogenase E1 component GI364_13070 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_13070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GI364_13075 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GI364_13075 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GI364_13080 PF02954 Bacterial regulatory protein, Fis family GI364_13080 PF00989 PAS fold GI364_13080 PF00158 Sigma-54 interaction domain GI364_13090 PF01967 MoaC family GI364_13095 PF02391 MoaE protein GI364_13100 PF00753 Metallo-beta-lactamase superfamily GI364_13105 PF00041 Fibronectin type III domain GI364_13105 PF00704 Glycosyl hydrolases family 18 GI364_13115 PF01578 Cytochrome C assembly protein GI364_13125 PF00005 ABC transporter GI364_13135 PF01578 Cytochrome C assembly protein GI364_13135 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal GI364_13140 PF03100 CcmE GI364_13155 PF03061 Thioesterase superfamily GI364_13160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GI364_13160 PF00364 Biotin-requiring enzyme GI364_13160 PF02817 e3 binding domain GI364_13170 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GI364_13175 PF01209 ubiE/COQ5 methyltransferase family GI364_13180 PF00583 Acetyltransferase (GNAT) family GI364_13185 PF01451 Low molecular weight phosphotyrosine protein phosphatase GI364_13190 PF02040 Arsenical pump membrane protein GI364_13195 PF01022 Bacterial regulatory protein, arsR family GI364_13205 PF12679 ABC-2 family transporter protein GI364_13210 PF13732 Domain of unknown function (DUF4162) GI364_13210 PF00005 ABC transporter GI364_13215 PF13396 Phospholipase_D-nuclease N-terminal GI364_13230 PF08281 Sigma-70, region 4 GI364_13230 PF04542 Sigma-70 region 2 GI364_13240 PF00563 EAL domain GI364_13240 PF13188 PAS domain GI364_13240 PF03707 Bacterial signalling protein N terminal repeat GI364_13240 PF00990 Diguanylate cyclase, GGDEF domain GI364_13250 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GI364_13250 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GI364_13255 PF00583 Acetyltransferase (GNAT) family GI364_13260 PF08769 Sporulation initiation factor Spo0A C terminal GI364_13260 PF00072 Response regulator receiver domain GI364_13265 PF17820 PDZ domain GI364_13265 PF05580 SpoIVB peptidase S55 GI364_13270 PF02463 RecF/RecN/SMC N terminal domain GI364_13275 PF01513 ATP-NAD kinase GI364_13285 PF01728 FtsJ-like methyltransferase GI364_13285 PF01479 S4 domain GI364_13290 PF02779 Transketolase, pyrimidine binding domain GI364_13290 PF02780 Transketolase, C-terminal domain GI364_13290 PF13292 1-deoxy-D-xylulose-5-phosphate synthase GI364_13300 PF00348 Polyprenyl synthetase GI364_13305 PF02609 Exonuclease VII small subunit GI364_13310 PF13742 OB-fold nucleic acid binding domain GI364_13310 PF02601 Exonuclease VII, large subunit GI364_13315 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GI364_13315 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GI364_13320 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_13325 PF00814 Glycoprotease family GI364_13330 PF01029 NusB family GI364_13345 PF03780 Asp23 family, cell envelope-related function GI364_13350 PF00289 Biotin carboxylase, N-terminal domain GI364_13350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GI364_13350 PF02785 Biotin carboxylase C-terminal domain GI364_13355 PF00364 Biotin-requiring enzyme GI364_13375 PF09546 Stage III sporulation protein AE (spore_III_AE) GI364_13380 PF06686 Stage III sporulation protein AC/AD protein family GI364_13385 PF06686 Stage III sporulation protein AC/AD protein family GI364_13400 PF09285 Elongation factor P, C-terminal GI364_13400 PF08207 Elongation factor P (EF-P) KOW-like domain GI364_13400 PF01132 Elongation factor P (EF-P) OB domain GI364_13405 PF01220 Dehydroquinase class II GI364_13410 PF02347 Glycine cleavage system P-protein GI364_13415 PF02347 Glycine cleavage system P-protein GI364_13420 PF08669 Glycine cleavage T-protein C-terminal barrel domain GI364_13420 PF01571 Aminomethyltransferase folate-binding domain GI364_13425 PF00176 SNF2 family N-terminal domain GI364_13425 PF00271 Helicase conserved C-terminal domain GI364_13435 PF00308 Bacterial dnaA protein GI364_13435 PF08299 Bacterial dnaA protein helix-turn-helix GI364_13440 PF01202 Shikimate kinase GI364_13465 PF08334 Type II secretion system (T2SS), protein G GI364_13465 PF07963 Prokaryotic N-terminal methylation motif GI364_13475 PF00437 Type II/IV secretion system protein GI364_13485 PF09269 Domain of unknown function (DUF1967) GI364_13485 PF01018 GTP1/OBG GI364_13485 PF01926 50S ribosome-binding GTPase GI364_13495 PF01016 Ribosomal L27 protein GI364_13505 PF00829 Ribosomal prokaryotic L21 protein GI364_13510 PF02163 Peptidase family M50 GI364_13520 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GI364_13525 PF03775 Septum formation inhibitor MinC, C-terminal domain GI364_13535 PF04085 rod shape-determining protein MreC GI364_13545 PF04002 RadC-like JAB domain GI364_13560 PF06725 3D domain GI364_13560 PF07501 G5 domain GI364_13560 PF03990 G5-linked-Ubiquitin-like domain GI364_13565 PF01478 Type IV leader peptidase family GI364_13565 PF06750 Bacterial Peptidase A24 N-terminal domain GI364_13580 PF02875 Mur ligase family, glutamate ligase domain GI364_13580 PF01225 Mur ligase family, catalytic domain GI364_13580 PF08245 Mur ligase middle domain GI364_13585 PF02875 Mur ligase family, glutamate ligase domain GI364_13585 PF08245 Mur ligase middle domain GI364_13590 PF08264 Anticodon-binding domain of tRNA GI364_13590 PF00133 tRNA synthetases class I (I, L, M and V) GI364_13590 PF10458 Valyl tRNA synthetase tRNA binding arm GI364_13620 PF00202 Aminotransferase class-III GI364_13625 PF00490 Delta-aminolevulinic acid dehydratase GI364_13635 PF03900 Porphobilinogen deaminase, C-terminal domain GI364_13635 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain GI364_13640 PF01578 Cytochrome C assembly protein GI364_13645 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain GI364_13645 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain GI364_13645 PF01488 Shikimate / quinate 5-dehydrogenase GI364_13650 PF01926 50S ribosome-binding GTPase GI364_13655 PF05362 Lon protease (S16) C-terminal proteolytic domain GI364_13655 PF00004 ATPase family associated with various cellular activities (AAA) GI364_13655 PF02190 ATP-dependent protease La (LON) substrate-binding domain GI364_13660 PF05362 Lon protease (S16) C-terminal proteolytic domain GI364_13660 PF00004 ATPase family associated with various cellular activities (AAA) GI364_13665 PF06689 ClpX C4-type zinc finger GI364_13665 PF07724 AAA domain (Cdc48 subfamily) GI364_13665 PF10431 C-terminal, D2-small domain, of ClpB protein GI364_13670 PF00574 Clp protease GI364_13675 PF05698 Bacterial trigger factor protein (TF) C-terminus GI364_13675 PF05697 Bacterial trigger factor protein (TF) GI364_13675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GI364_13695 PF01725 Ham1 family GI364_13700 PF01177 Asp/Glu/Hydantoin racemase GI364_13705 PF01047 MarR family GI364_13710 PF00196 Bacterial regulatory proteins, luxR family GI364_13715 PF00684 DnaJ central domain GI364_13715 PF00226 DnaJ domain GI364_13715 PF01556 DnaJ C terminal domain GI364_13725 PF13085 2Fe-2S iron-sulfur cluster binding domain GI364_13725 PF13183 4Fe-4S dicluster domain GI364_13730 PF02910 Fumarate reductase flavoprotein C-term GI364_13730 PF00890 FAD binding domain GI364_13735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GI364_13740 PF02151 UvrB/uvrC motif GI364_13740 PF08459 UvrC Helix-hairpin-helix N-terminal GI364_13740 PF01541 GIY-YIG catalytic domain GI364_13765 PF00749 tRNA synthetases class I (E and Q), catalytic domain GI364_13775 PF00155 Aminotransferase class I and II GI364_13780 PF01699 Sodium/calcium exchanger protein GI364_13815 PF08645 Polynucleotide kinase 3 phosphatase GI364_13820 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GI364_13820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GI364_13825 PF01047 MarR family GI364_13830 PF01960 ArgJ family GI364_13840 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GI364_13845 PF01209 ubiE/COQ5 methyltransferase family GI364_13850 PF03239 Iron permease FTR1 family GI364_13865 PF00313 'Cold-shock' DNA-binding domain GI364_13870 PF00174 Oxidoreductase molybdopterin binding domain GI364_13880 PF00989 PAS fold GI364_13880 PF00512 His Kinase A (phospho-acceptor) domain GI364_13880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_13880 PF16736 Single Cache-like GI364_13885 PF00486 Transcriptional regulatory protein, C terminal GI364_13885 PF00072 Response regulator receiver domain GI364_13890 PF01177 Asp/Glu/Hydantoin racemase GI364_13915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GI364_13915 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GI364_13915 PF02824 TGS domain GI364_13915 PF03129 Anticodon binding domain GI364_13925 PF03466 LysR substrate binding domain GI364_13925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_13965 PF01966 HD domain GI364_13975 PF00144 Beta-lactamase GI364_13975 PF07930 D-aminopeptidase, domain B GI364_13990 PF02833 DHHA2 domain GI364_13990 PF01368 DHH family GI364_14000 PF03129 Anticodon binding domain GI364_14000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GI364_14000 PF04073 Aminoacyl-tRNA editing domain GI364_14005 PF02073 Thermophilic metalloprotease (M29) GI364_14015 PF00999 Sodium/hydrogen exchanger family GI364_14020 PF02386 Cation transport protein GI364_14025 PF02254 TrkA-N domain GI364_14025 PF02080 TrkA-C domain GI364_14025 PF00999 Sodium/hydrogen exchanger family GI364_14035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_14035 PF00512 His Kinase A (phospho-acceptor) domain GI364_14035 PF13493 Domain of unknown function (DUF4118) GI364_14035 PF02702 Osmosensitive K+ channel His kinase sensor domain GI364_14040 PF00486 Transcriptional regulatory protein, C terminal GI364_14040 PF00072 Response regulator receiver domain GI364_14045 PF08240 Alcohol dehydrogenase GroES-like domain GI364_14045 PF00107 Zinc-binding dehydrogenase GI364_14065 PF00440 Bacterial regulatory proteins, tetR family GI364_14070 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GI364_14070 PF14572 Phosphoribosyl synthetase-associated domain GI364_14075 PF07690 Major Facilitator Superfamily GI364_14090 PF01022 Bacterial regulatory protein, arsR family GI364_14100 PF00005 ABC transporter GI364_14125 PF00561 alpha/beta hydrolase fold GI364_14125 PF08386 TAP-like protein GI364_14140 PF03466 LysR substrate binding domain GI364_14140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_14155 PF07690 Major Facilitator Superfamily GI364_14160 PF01925 Sulfite exporter TauE/SafE GI364_14165 PF01747 ATP-sulfurylase GI364_14165 PF14306 PUA-like domain GI364_14170 PF01507 Phosphoadenosine phosphosulfate reductase family GI364_14175 PF00474 Sodium:solute symporter family GI364_14180 PF11755 Protein of unknown function (DUF3311) GI364_14185 PF07687 Peptidase dimerisation domain GI364_14185 PF01546 Peptidase family M20/M25/M40 GI364_14190 PF07687 Peptidase dimerisation domain GI364_14190 PF01546 Peptidase family M20/M25/M40 GI364_14200 PF01546 Peptidase family M20/M25/M40 GI364_14200 PF07687 Peptidase dimerisation domain GI364_14205 PF04542 Sigma-70 region 2 GI364_14205 PF08281 Sigma-70, region 4 GI364_14205 PF12680 SnoaL-like domain GI364_14215 PF02867 Ribonucleotide reductase, barrel domain GI364_14215 PF03477 ATP cone domain GI364_14215 PF00317 Ribonucleotide reductase, all-alpha domain GI364_14220 PF03477 ATP cone domain GI364_14225 PF13344 Haloacid dehalogenase-like hydrolase GI364_14230 PF01923 Cobalamin adenosyltransferase GI364_14250 PF01678 Diaminopimelate epimerase GI364_14255 PF01546 Peptidase family M20/M25/M40 GI364_14265 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) GI364_14280 PF07486 Cell Wall Hydrolase GI364_14280 PF01471 Putative peptidoglycan binding domain GI364_14285 PF00535 Glycosyl transferase family 2 GI364_14305 PF07690 Major Facilitator Superfamily GI364_14310 PF04204 Homoserine O-succinyltransferase GI364_14320 PF00731 AIR carboxylase GI364_14325 PF02222 ATP-grasp domain GI364_14325 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain GI364_14335 PF00877 NlpC/P60 family GI364_14335 PF01476 LysM domain GI364_14340 PF01144 Coenzyme A transferase GI364_14345 PF01144 Coenzyme A transferase GI364_14350 PF01613 Flavin reductase like domain GI364_14355 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase GI364_14355 PF04101 Glycosyltransferase family 28 C-terminal domain GI364_14365 PF01522 Polysaccharide deacetylase GI364_14370 PF04101 Glycosyltransferase family 28 C-terminal domain GI364_14370 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase GI364_14375 PF07690 Major Facilitator Superfamily GI364_14390 PF17863 AAA lid domain GI364_14390 PF07726 ATPase family associated with various cellular activities (AAA) GI364_14395 PF02080 TrkA-C domain GI364_14395 PF03471 Transporter associated domain GI364_14395 PF00999 Sodium/hydrogen exchanger family GI364_14410 PF00578 AhpC/TSA family GI364_14415 PF00561 alpha/beta hydrolase fold GI364_14420 PF16582 Middle domain of thiamine pyrophosphate GI364_14420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GI364_14420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GI364_14425 PF00425 chorismate binding enzyme GI364_14430 PF00501 AMP-binding enzyme GI364_14430 PF13193 AMP-binding enzyme C-terminal domain GI364_14435 PF00378 Enoyl-CoA hydratase/isomerase GI364_14440 PF01040 UbiA prenyltransferase family GI364_14445 PF13520 Amino acid permease GI364_14450 PF02567 Phenazine biosynthesis-like protein GI364_14465 PF13520 Amino acid permease GI364_14485 PF00578 AhpC/TSA family GI364_14490 PF02583 Metal-sensitive transcriptional repressor GI364_14495 PF00403 Heavy-metal-associated domain GI364_14535 PF00768 D-alanyl-D-alanine carboxypeptidase GI364_14535 PF07943 Penicillin-binding protein 5, C-terminal domain GI364_14545 PF00990 Diguanylate cyclase, GGDEF domain GI364_14555 PF00265 Thymidine kinase GI364_14560 PF01022 Bacterial regulatory protein, arsR family GI364_14570 PF03193 RsgA GTPase GI364_14575 PF00892 EamA-like transporter family GI364_14580 PF00730 HhH-GPD superfamily base excision DNA repair protein GI364_14595 PF04299 Putative FMN-binding domain GI364_14600 PF13520 Amino acid permease GI364_14640 PF01061 ABC-2 type transporter GI364_14645 PF13732 Domain of unknown function (DUF4162) GI364_14645 PF00005 ABC transporter GI364_14655 PF03649 Uncharacterised protein family (UPF0014) GI364_14660 PF00005 ABC transporter GI364_14665 PF00005 ABC transporter GI364_14675 PF08359 YsiA-like protein, C-terminal region GI364_14675 PF00440 Bacterial regulatory proteins, tetR family GI364_14710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GI364_14715 PF07690 Major Facilitator Superfamily GI364_14720 PF02082 Transcriptional regulator GI364_14730 PF01925 Sulfite exporter TauE/SafE GI364_14735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GI364_14735 PF00384 Molybdopterin oxidoreductase GI364_14735 PF01568 Molydopterin dinucleotide binding domain GI364_14740 PF13247 4Fe-4S dicluster domain GI364_14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_14745 PF03466 LysR substrate binding domain GI364_14765 PF01206 Sulfurtransferase TusA GI364_14770 PF00581 Rhodanese-like domain GI364_14770 PF00753 Metallo-beta-lactamase superfamily GI364_14775 PF00171 Aldehyde dehydrogenase family GI364_14795 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GI364_14800 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_14805 PF00186 Dihydrofolate reductase GI364_14810 PF07739 TipAS antibiotic-recognition domain GI364_14810 PF13411 MerR HTH family regulatory protein GI364_14815 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GI364_14815 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GI364_14825 PF07690 Major Facilitator Superfamily GI364_14860 PF00797 N-acetyltransferase GI364_14875 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_14880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_14880 PF13426 PAS domain GI364_14880 PF00512 His Kinase A (phospho-acceptor) domain GI364_14880 PF00989 PAS fold GI364_14880 PF13188 PAS domain GI364_14885 PF00990 Diguanylate cyclase, GGDEF domain GI364_14885 PF00072 Response regulator receiver domain GI364_14890 PF00027 Cyclic nucleotide-binding domain GI364_14890 PF00325 Bacterial regulatory proteins, crp family GI364_14895 PF03239 Iron permease FTR1 family GI364_14905 PF13520 Amino acid permease GI364_14910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_14910 PF03466 LysR substrate binding domain GI364_14940 PF07690 Major Facilitator Superfamily GI364_14950 PF00579 tRNA synthetases class I (W and Y) GI364_14985 PF07690 Major Facilitator Superfamily GI364_14990 PF07690 Major Facilitator Superfamily GI364_15005 PF00589 Phage integrase family GI364_15005 PF02899 Phage integrase, N-terminal SAM-like domain GI364_15045 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GI364_15045 PF18277 AbrB C-terminal domain GI364_15050 PF00872 Transposase, Mutator family GI364_15145 PF13302 Acetyltransferase (GNAT) domain GI364_15150 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) GI364_15155 PF04463 Protein of unknown function (DUF523) GI364_15190 PF02899 Phage integrase, N-terminal SAM-like domain GI364_15190 PF00589 Phage integrase family GI364_15205 PF02899 Phage integrase, N-terminal SAM-like domain GI364_15205 PF00589 Phage integrase family GI364_15210 PF02899 Phage integrase, N-terminal SAM-like domain GI364_15210 PF00589 Phage integrase family GI364_15235 PF18277 AbrB C-terminal domain GI364_15235 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GI364_15305 PF01784 NIF3 (NGG1p interacting factor 3) GI364_15320 PF04542 Sigma-70 region 2 GI364_15320 PF03979 Sigma-70 factor, region 1.1 GI364_15320 PF00140 Sigma-70 factor, region 1.2 GI364_15320 PF04545 Sigma-70, region 4 GI364_15320 PF04539 Sigma-70 region 3 GI364_15325 PF01807 CHC2 zinc finger GI364_15325 PF08275 DNA primase catalytic core, N-terminal domain GI364_15325 PF10410 DnaB-helicase binding domain of primase GI364_15330 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GI364_15330 PF02896 PEP-utilising enzyme, TIM barrel domain GI364_15330 PF00391 PEP-utilising enzyme, mobile domain GI364_15335 PF03618 Kinase/pyrophosphorylase GI364_15340 PF08279 HTH domain GI364_15340 PF00571 CBS domain GI364_15345 PF11967 Recombination protein O N terminal GI364_15345 PF02565 Recombination protein O C terminal GI364_15355 PF07650 KH domain GI364_15355 PF01926 50S ribosome-binding GTPase GI364_15360 PF01219 Prokaryotic diacylglycerol kinase GI364_15365 PF02130 Uncharacterized protein family UPF0054 GI364_15370 PF07698 7TM receptor with intracellular HD hydrolase GI364_15370 PF07697 7TM-HD extracellular GI364_15370 PF01966 HD domain GI364_15375 PF02562 PhoH-like protein GI364_15395 PF09424 Yqey-like protein GI364_15400 PF01165 Ribosomal protein S21 GI364_15405 PF02690 Na+/Pi-cotransporter GI364_15410 PF01791 DeoC/LacD family aldolase GI364_15415 PF00919 Uncharacterized protein family UPF0004 GI364_15415 PF01938 TRAM domain GI364_15415 PF04055 Radical SAM superfamily GI364_15420 PF04452 RNA methyltransferase GI364_15430 PF00684 DnaJ central domain GI364_15430 PF00226 DnaJ domain GI364_15430 PF01556 DnaJ C terminal domain GI364_15435 PF00012 Hsp70 protein GI364_15440 PF01025 GrpE GI364_15445 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GI364_15445 PF01628 HrcA protein C terminal domain GI364_15450 PF06969 HemN C-terminal domain GI364_15450 PF04055 Radical SAM superfamily GI364_15455 PF00679 Elongation factor G C-terminus GI364_15455 PF06421 GTP-binding protein LepA C-terminus GI364_15455 PF00009 Elongation factor Tu GTP binding domain GI364_15455 PF03144 Elongation factor Tu domain 2 GI364_15465 PF01464 Transglycosylase SLT domain GI364_15470 PF03418 Germination protease GI364_15475 PF01649 Ribosomal protein S20 GI364_15480 PF06144 DNA polymerase III, delta subunit GI364_15485 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_15505 PF01325 Iron dependent repressor, N-terminal DNA binding domain GI364_15505 PF02742 Iron dependent repressor, metal binding and dimerisation domain GI364_15510 PF08241 Methyltransferase domain GI364_15520 PF01966 HD domain GI364_15525 PF01467 Cytidylyltransferase-like GI364_15530 PF01488 Shikimate / quinate 5-dehydrogenase GI364_15530 PF18317 Shikimate 5'-dehydrogenase C-terminal domain GI364_15530 PF08501 Shikimate dehydrogenase substrate binding domain GI364_15535 PF01926 50S ribosome-binding GTPase GI364_15545 PF04542 Sigma-70 region 2 GI364_15545 PF04545 Sigma-70, region 4 GI364_15550 PF00905 Penicillin binding protein transpeptidase domain GI364_15550 PF03717 Penicillin-binding Protein dimerisation domain GI364_15560 PF03652 Holliday junction resolvase GI364_15565 PF06135 IreB regulatory phosphoprotein GI364_15570 PF02272 DHHA1 domain GI364_15570 PF01411 tRNA synthetases class II (A) GI364_15570 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GI364_15580 PF01594 AI-2E family transporter GI364_15585 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GI364_15590 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GI364_15600 PF00266 Aminotransferase class-V GI364_15605 PF02082 Transcriptional regulator GI364_15610 PF00004 ATPase family associated with various cellular activities (AAA) GI364_15610 PF16193 AAA C-terminal domain GI364_15610 PF12002 MgsA AAA+ ATPase C terminal GI364_15615 PF01212 Beta-eliminating lyase GI364_15625 PF02938 GAD domain GI364_15625 PF00152 tRNA synthetases class II (D, K and N) GI364_15625 PF01336 OB-fold nucleic acid binding domain GI364_15630 PF13393 Histidyl-tRNA synthetase GI364_15630 PF03129 Anticodon binding domain GI364_15640 PF03841 L-seryl-tRNA selenium transferase GI364_15640 PF12390 Selenocysteine synthase N terminal GI364_15645 PF00202 Aminotransferase class-III GI364_15655 PF00085 Thioredoxin GI364_15680 PF00005 ABC transporter GI364_15690 PF02261 Aspartate decarboxylase GI364_15695 PF14489 QueF-like protein GI364_15700 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF GI364_15700 PF01189 16S rRNA methyltransferase RsmB/F GI364_15700 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF GI364_15705 PF00108 Thiolase, N-terminal domain GI364_15705 PF02803 Thiolase, C-terminal domain GI364_15730 PF01209 ubiE/COQ5 methyltransferase family GI364_15740 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GI364_15750 PF00248 Aldo/keto reductase family GI364_15755 PF00994 Probable molybdopterin binding domain GI364_15755 PF03453 MoeA N-terminal region (domain I and II) GI364_15755 PF03454 MoeA C-terminal region (domain IV) GI364_15760 PF12679 ABC-2 family transporter protein GI364_15765 PF00005 ABC transporter GI364_15775 PF00005 ABC transporter GI364_15780 PF00392 Bacterial regulatory proteins, gntR family GI364_15790 PF01293 Phosphoenolpyruvate carboxykinase GI364_15815 PF01156 Inosine-uridine preferring nucleoside hydrolase GI364_15825 PF00483 Nucleotidyl transferase GI364_15830 PF02073 Thermophilic metalloprotease (M29) GI364_15840 PF07690 Major Facilitator Superfamily GI364_15860 PF13520 Amino acid permease GI364_15865 PF00440 Bacterial regulatory proteins, tetR family GI364_15865 PF17754 MftR C-terminal domain GI364_15870 PF07690 Major Facilitator Superfamily GI364_15875 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) GI364_15880 PF00580 UvrD/REP helicase N-terminal domain GI364_15880 PF13361 UvrD-like helicase C-terminal domain GI364_15880 PF12705 PD-(D/E)XK nuclease superfamily GI364_15885 PF12705 PD-(D/E)XK nuclease superfamily GI364_15890 PF13514 AAA domain GI364_15895 PF00149 Calcineurin-like phosphoesterase GI364_15900 PF16884 N-terminal domain of oxidoreductase GI364_15900 PF00107 Zinc-binding dehydrogenase GI364_15905 PF01207 Dihydrouridine synthase (Dus) GI364_15920 PF00768 D-alanyl-D-alanine carboxypeptidase GI364_15920 PF07943 Penicillin-binding protein 5, C-terminal domain GI364_15925 PF01325 Iron dependent repressor, N-terminal DNA binding domain GI364_15925 PF18357 Diphteria toxin repressor SH3 domain GI364_15925 PF02742 Iron dependent repressor, metal binding and dimerisation domain GI364_15930 PF01557 Fumarylacetoacetate (FAA) hydrolase family GI364_15935 PF06491 Disulphide isomerase GI364_15940 PF01208 Uroporphyrinogen decarboxylase (URO-D) GI364_15945 PF00762 Ferrochelatase GI364_15950 PF01593 Flavin containing amine oxidoreductase GI364_15955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_15955 PF05384 Sensor protein DegS GI364_15955 PF07730 Histidine kinase GI364_15960 PF00072 Response regulator receiver domain GI364_15960 PF00196 Bacterial regulatory proteins, luxR family GI364_15965 PF06081 Aromatic acid exporter family member 1 GI364_15980 PF00248 Aldo/keto reductase family GI364_16010 PF02386 Cation transport protein GI364_16015 PF02080 TrkA-C domain GI364_16015 PF02254 TrkA-N domain GI364_16020 PF03707 Bacterial signalling protein N terminal repeat GI364_16020 PF00990 Diguanylate cyclase, GGDEF domain GI364_16020 PF00563 EAL domain GI364_16025 PF00753 Metallo-beta-lactamase superfamily GI364_16030 PF02580 D-Tyr-tRNA(Tyr) deacylase GI364_16035 PF04607 Region found in RelA / SpoT proteins GI364_16035 PF13291 ACT domain GI364_16035 PF02824 TGS domain GI364_16040 PF00156 Phosphoribosyl transferase domain GI364_16045 PF10141 Single-strand DNA-specific exonuclease, C terminal domain GI364_16045 PF01368 DHH family GI364_16045 PF02272 DHHA1 domain GI364_16045 PF17768 RecJ OB domain GI364_16050 PF01545 Cation efflux family GI364_16050 PF16916 Dimerisation domain of Zinc Transporter GI364_16055 PF02355 Protein export membrane protein GI364_16060 PF02355 Protein export membrane protein GI364_16070 PF01943 Polysaccharide biosynthesis protein GI364_16070 PF14667 Polysaccharide biosynthesis C-terminal domain GI364_16075 PF04239 Protein of unknown function (DUF421) GI364_16080 PF00990 Diguanylate cyclase, GGDEF domain GI364_16095 PF01702 Queuine tRNA-ribosyltransferase GI364_16100 PF02547 Queuosine biosynthesis protein GI364_16105 PF00331 Glycosyl hydrolase family 10 GI364_16105 PF12791 Anti-sigma factor N-terminus GI364_16110 PF04542 Sigma-70 region 2 GI364_16115 PF17864 RuvB AAA lid domain GI364_16115 PF05491 RuvB C-terminal winged helix domain GI364_16115 PF05496 Holliday junction DNA helicase RuvB P-loop domain GI364_16120 PF01330 RuvA N terminal domain GI364_16120 PF07499 RuvA, C-terminal domain GI364_16125 PF02075 Crossover junction endodeoxyribonuclease RuvC GI364_16135 PF01709 Transcriptional regulator GI364_16140 PF02540 NAD synthase GI364_16145 PF02540 NAD synthase GI364_16145 PF00795 Carbon-nitrogen hydrolase GI364_16165 PF00579 tRNA synthetases class I (W and Y) GI364_16165 PF01479 S4 domain GI364_16170 PF00905 Penicillin binding protein transpeptidase domain GI364_16170 PF00912 Transglycosylase GI364_16175 PF00488 MutS domain V GI364_16175 PF01713 Smr domain GI364_16190 PF05164 Cell division protein ZapA GI364_16195 PF03483 B3/4 domain GI364_16195 PF01588 Putative tRNA binding domain GI364_16195 PF03147 Ferredoxin-fold anticodon binding domain GI364_16195 PF03484 tRNA synthetase B5 domain GI364_16195 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain GI364_16200 PF01409 tRNA synthetases class II core domain (F) GI364_16200 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain GI364_16205 PF00248 Aldo/keto reductase family GI364_16210 PF00892 EamA-like transporter family GI364_16220 PF02585 GlcNAc-PI de-N-acetylase GI364_16225 PF00232 Glycosyl hydrolase family 1 GI364_16230 PF02056 Family 4 glycosyl hydrolase GI364_16230 PF11975 Family 4 glycosyl hydrolase C-terminal domain GI364_16255 PF01012 Electron transfer flavoprotein domain GI364_16255 PF00766 Electron transfer flavoprotein FAD-binding domain GI364_16255 PF13237 4Fe-4S dicluster domain GI364_16260 PF01012 Electron transfer flavoprotein domain GI364_16285 PF02628 Cytochrome oxidase assembly protein GI364_16290 PF01040 UbiA prenyltransferase family GI364_16305 PF00115 Cytochrome C and Quinol oxidase polypeptide I GI364_16310 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GI364_16345 PF02146 Sir2 family GI364_16365 PF06778 Chlorite dismutase GI364_16370 PF02913 FAD linked oxidases, C-terminal domain GI364_16370 PF01565 FAD binding domain GI364_16375 PF00795 Carbon-nitrogen hydrolase GI364_16380 PF00155 Aminotransferase class I and II GI364_16390 PF00581 Rhodanese-like domain GI364_16415 PF02653 Branched-chain amino acid transport system / permease component GI364_16420 PF02653 Branched-chain amino acid transport system / permease component GI364_16425 PF00005 ABC transporter GI364_16430 PF00005 ABC transporter GI364_16430 PF12399 Branched-chain amino acid ATP-binding cassette transporter GI364_16440 PF06463 Molybdenum Cofactor Synthesis C GI364_16440 PF04055 Radical SAM superfamily GI364_16445 PF07690 Major Facilitator Superfamily GI364_16450 PF07739 TipAS antibiotic-recognition domain GI364_16450 PF13411 MerR HTH family regulatory protein GI364_16455 PF00857 Isochorismatase family GI364_16460 PF09371 Tex-like protein N-terminal domain GI364_16460 PF16921 Tex protein YqgF-like domain GI364_16460 PF00575 S1 RNA binding domain GI364_16460 PF17674 HHH domain GI364_16480 PF05506 Domain of unknown function (DUF756) GI364_16480 PF04185 Phosphoesterase family GI364_16490 PF13520 Amino acid permease GI364_16495 PF03315 Serine dehydratase beta chain GI364_16495 PF01842 ACT domain GI364_16500 PF03313 Serine dehydratase alpha chain GI364_16505 PF00291 Pyridoxal-phosphate dependent enzyme GI364_16515 PF06738 Putative threonine/serine exporter GI364_16520 PF06738 Putative threonine/serine exporter GI364_16520 PF12821 Threonine/Serine exporter, ThrE GI364_16525 PF00067 Cytochrome P450 GI364_16535 PF02687 FtsX-like permease family GI364_16535 PF12704 MacB-like periplasmic core domain GI364_16535 PF00005 ABC transporter GI364_16540 PF02374 Anion-transporting ATPase GI364_16540 PF17886 HSP20-like domain found in ArsA GI364_16570 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GI364_16570 PF00437 Type II/IV secretion system protein GI364_16575 PF00482 Type II secretion system (T2SS), protein F GI364_16615 PF00266 Aminotransferase class-V GI364_16625 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_16625 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_16635 PF00378 Enoyl-CoA hydratase/isomerase GI364_16655 PF05698 Bacterial trigger factor protein (TF) C-terminus GI364_16665 PF02424 ApbE family GI364_16675 PF02803 Thiolase, C-terminal domain GI364_16675 PF00108 Thiolase, N-terminal domain GI364_16680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_16680 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_16680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_16695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_16695 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_16695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_16710 PF13452 N-terminal half of MaoC dehydratase GI364_16715 PF13193 AMP-binding enzyme C-terminal domain GI364_16715 PF00501 AMP-binding enzyme GI364_16725 PF02322 Cytochrome bd terminal oxidase subunit II GI364_16730 PF01654 Cytochrome bd terminal oxidase subunit I GI364_16740 PF09339 IclR helix-turn-helix domain GI364_16740 PF01614 Bacterial transcriptional regulator GI364_16745 PF00294 pfkB family carbohydrate kinase GI364_16750 PF01758 Sodium Bile acid symporter family GI364_16760 PF08502 LeuA allosteric (dimerisation) domain GI364_16760 PF00682 HMGL-like GI364_16765 PF08502 LeuA allosteric (dimerisation) domain GI364_16765 PF00682 HMGL-like GI364_16770 PF00561 alpha/beta hydrolase fold GI364_16775 PF00378 Enoyl-CoA hydratase/isomerase GI364_16780 PF01979 Amidohydrolase family GI364_16795 PF00392 Bacterial regulatory proteins, gntR family GI364_16795 PF07729 FCD domain GI364_16825 PF00381 PTS HPr component phosphorylation site GI364_16830 PF04309 Glycerol-3-phosphate responsive antiterminator GI364_16840 PF01266 FAD dependent oxidoreductase GI364_16840 PF16901 C-terminal domain of alpha-glycerophosphate oxidase GI364_16845 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GI364_16845 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GI364_16850 PF00230 Major intrinsic protein GI364_16855 PF02733 Dak1 domain GI364_16860 PF02734 DAK2 domain GI364_16865 PF05524 PEP-utilising enzyme, N-terminal GI364_16865 PF00381 PTS HPr component phosphorylation site GI364_16865 PF00391 PEP-utilising enzyme, mobile domain GI364_16865 PF03610 PTS system fructose IIA component GI364_16875 PF00924 Mechanosensitive ion channel GI364_16880 PF00072 Response regulator receiver domain GI364_16880 PF04397 LytTr DNA-binding domain GI364_16885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_16885 PF06580 Histidine kinase GI364_16895 PF00487 Fatty acid desaturase GI364_16900 PF00313 'Cold-shock' DNA-binding domain GI364_16935 PF03737 Aldolase/RraA GI364_16940 PF02585 GlcNAc-PI de-N-acetylase GI364_16965 PF08281 Sigma-70, region 4 GI364_16965 PF04542 Sigma-70 region 2 GI364_16970 PF05067 Manganese containing catalase GI364_16975 PF07301 Protein of unknown function (DUF1453) GI364_16980 PF12652 CotJB protein GI364_16985 PF11007 Spore coat associated protein JA (CotJA) GI364_17000 PF09335 SNARE associated Golgi protein GI364_17005 PF08032 RNA 2'-O ribose methyltransferase substrate binding GI364_17005 PF00588 SpoU rRNA Methylase family GI364_17010 PF00453 Ribosomal protein L20 GI364_17015 PF01632 Ribosomal protein L35 GI364_17020 PF05198 Translation initiation factor IF-3, N-terminal domain GI364_17020 PF00707 Translation initiation factor IF-3, C-terminal domain GI364_17025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GI364_17025 PF02824 TGS domain GI364_17025 PF03129 Anticodon binding domain GI364_17025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GI364_17045 PF02261 Aspartate decarboxylase GI364_17055 PF00135 Carboxylesterase family GI364_17060 PF00528 Binding-protein-dependent transport system inner membrane component GI364_17065 PF00528 Binding-protein-dependent transport system inner membrane component GI364_17070 PF00440 Bacterial regulatory proteins, tetR family GI364_17070 PF17922 Tetracyclin repressor-like, C-terminal domain GI364_17075 PF07690 Major Facilitator Superfamily GI364_17160 PF02675 S-adenosylmethionine decarboxylase GI364_17165 PF01694 Rhomboid family GI364_17175 PF01435 Peptidase family M48 GI364_17195 PF00571 CBS domain GI364_17200 PF00269 Small, acid-soluble spore proteins, alpha/beta type GI364_17205 PF00196 Bacterial regulatory proteins, luxR family GI364_17205 PF00072 Response regulator receiver domain GI364_17210 PF00672 HAMP domain GI364_17210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_17210 PF07730 Histidine kinase GI364_17220 PF08534 Redoxin GI364_17225 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GI364_17230 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) GI364_17235 PF02659 Putative manganese efflux pump GI364_17240 PF03109 ABC1 family GI364_17245 PF03949 Malic enzyme, NAD binding domain GI364_17245 PF00390 Malic enzyme, N-terminal domain GI364_17250 PF00291 Pyridoxal-phosphate dependent enzyme GI364_17255 PF08544 GHMP kinases C terminal GI364_17255 PF00288 GHMP kinases N terminal domain GI364_17260 PF01842 ACT domain GI364_17260 PF00742 Homoserine dehydrogenase GI364_17260 PF03447 Homoserine dehydrogenase, NAD binding domain GI364_17270 PF00694 Aconitase C-terminal domain GI364_17275 PF00330 Aconitase family (aconitate hydratase) GI364_17280 PF00180 Isocitrate/isopropylmalate dehydrogenase GI364_17285 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GI364_17285 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GI364_17290 PF10369 Small subunit of acetolactate synthase GI364_17290 PF01842 ACT domain GI364_17295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GI364_17295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GI364_17295 PF00205 Thiamine pyrophosphate enzyme, central domain GI364_17300 PF01063 Amino-transferase class IV GI364_17310 PF01183 Glycosyl hydrolases family 25 GI364_17325 PF00463 Isocitrate lyase family GI364_17330 PF01274 Malate synthase GI364_17340 PF00005 ABC transporter GI364_17345 PF00989 PAS fold GI364_17345 PF13426 PAS domain GI364_17345 PF13188 PAS domain GI364_17345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_17345 PF00512 His Kinase A (phospho-acceptor) domain GI364_17355 PF08240 Alcohol dehydrogenase GroES-like domain GI364_17355 PF00107 Zinc-binding dehydrogenase GI364_17365 PF00037 4Fe-4S binding domain GI364_17365 PF01568 Molydopterin dinucleotide binding domain GI364_17365 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GI364_17365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GI364_17365 PF00384 Molybdopterin oxidoreductase GI364_17370 PF01568 Molydopterin dinucleotide binding domain GI364_17370 PF00384 Molybdopterin oxidoreductase GI364_17370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GI364_17385 PF01790 Prolipoprotein diacylglyceryl transferase GI364_17390 PF00437 Type II/IV secretion system protein GI364_17420 PF01654 Cytochrome bd terminal oxidase subunit I GI364_17425 PF02322 Cytochrome bd terminal oxidase subunit II GI364_17435 PF04205 FMN-binding domain GI364_17435 PF03358 NADPH-dependent FMN reductase GI364_17435 PF00890 FAD binding domain GI364_17440 PF01925 Sulfite exporter TauE/SafE GI364_17460 PF04185 Phosphoesterase family GI364_17465 PF03060 Nitronate monooxygenase GI364_17495 PF00171 Aldehyde dehydrogenase family GI364_17500 PF00696 Amino acid kinase family GI364_17500 PF01472 PUA domain GI364_17505 PF00578 AhpC/TSA family GI364_17515 PF01184 GPR1/FUN34/yaaH family GI364_17520 PF01494 FAD binding domain GI364_17530 PF01361 Tautomerase enzyme GI364_17540 PF07836 DmpG-like communication domain GI364_17540 PF00682 HMGL-like GI364_17545 PF01118 Semialdehyde dehydrogenase, NAD binding domain GI364_17545 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation GI364_17550 PF01557 Fumarylacetoacetate (FAA) hydrolase family GI364_17555 PF00171 Aldehyde dehydrogenase family GI364_17565 PF01614 Bacterial transcriptional regulator GI364_17565 PF09339 IclR helix-turn-helix domain GI364_17570 PF00171 Aldehyde dehydrogenase family GI364_17575 PF00866 Ring hydroxylating beta subunit GI364_17580 PF00848 Ring hydroxylating alpha subunit (catalytic domain) GI364_17580 PF00355 Rieske [2Fe-2S] domain GI364_17585 PF07690 Major Facilitator Superfamily GI364_17590 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GI364_17590 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GI364_17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_17595 PF00512 His Kinase A (phospho-acceptor) domain GI364_17600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_17600 PF00512 His Kinase A (phospho-acceptor) domain GI364_17600 PF00989 PAS fold GI364_17605 PF00251 Glycosyl hydrolases family 32 N-terminal domain GI364_17605 PF08244 Glycosyl hydrolases family 32 C terminal GI364_17615 PF04041 beta-1,4-mannooligosaccharide phosphorylase GI364_17625 PF00480 ROK family GI364_17630 PF00528 Binding-protein-dependent transport system inner membrane component GI364_17635 PF00528 Binding-protein-dependent transport system inner membrane component GI364_17645 PF01047 MarR family GI364_17645 PF00480 ROK family GI364_17655 PF00512 His Kinase A (phospho-acceptor) domain GI364_17655 PF00989 PAS fold GI364_17655 PF08447 PAS fold GI364_17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_17660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase GI364_17660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain GI364_17665 PF00111 2Fe-2S iron-sulfur cluster binding domain GI364_17665 PF01799 [2Fe-2S] binding domain GI364_17670 PF00941 FAD binding domain in molybdopterin dehydrogenase GI364_17670 PF03450 CO dehydrogenase flavoprotein C-terminal domain GI364_17680 PF05362 Lon protease (S16) C-terminal proteolytic domain GI364_17680 PF02190 ATP-dependent protease La (LON) substrate-binding domain GI364_17680 PF00004 ATPase family associated with various cellular activities (AAA) GI364_17695 PF05524 PEP-utilising enzyme, N-terminal GI364_17695 PF00391 PEP-utilising enzyme, mobile domain GI364_17695 PF02896 PEP-utilising enzyme, TIM barrel domain GI364_17700 PF01476 LysM domain GI364_17700 PF00704 Glycosyl hydrolases family 18 GI364_17735 PF01022 Bacterial regulatory protein, arsR family GI364_17740 PF00069 Protein kinase domain GI364_17790 PF00704 Glycosyl hydrolases family 18 GI364_17790 PF01476 LysM domain GI364_17795 PF16916 Dimerisation domain of Zinc Transporter GI364_17795 PF01545 Cation efflux family GI364_17800 PF01022 Bacterial regulatory protein, arsR family GI364_17805 PF02659 Putative manganese efflux pump GI364_17830 PF07726 ATPase family associated with various cellular activities (AAA) GI364_17830 PF17863 AAA lid domain GI364_17855 PF00664 ABC transporter transmembrane region GI364_17855 PF00005 ABC transporter GI364_17860 PF00005 ABC transporter GI364_17860 PF00664 ABC transporter transmembrane region GI364_17865 PF00342 Phosphoglucose isomerase GI364_17870 PF02829 3H domain GI364_17870 PF08279 HTH domain GI364_17880 PF03553 Na+/H+ antiporter family GI364_17885 PF04070 Domain of unknown function (DUF378) GI364_17890 PF13419 Haloacid dehalogenase-like hydrolase GI364_17895 PF00860 Permease family GI364_17905 PF07690 Major Facilitator Superfamily GI364_17920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_17920 PF03466 LysR substrate binding domain GI364_17925 PF00709 Adenylosuccinate synthetase GI364_17930 PF00892 EamA-like transporter family GI364_17935 PF00924 Mechanosensitive ion channel GI364_17935 PF12794 Mechanosensitive ion channel inner membrane domain 1 GI364_17935 PF12795 Mechanosensitive ion channel porin domain GI364_17955 PF07690 Major Facilitator Superfamily GI364_17965 PF00196 Bacterial regulatory proteins, luxR family GI364_17965 PF00072 Response regulator receiver domain GI364_17970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_17970 PF07730 Histidine kinase GI364_17990 PF02660 Glycerol-3-phosphate acyltransferase GI364_17995 PF04309 Glycerol-3-phosphate responsive antiterminator GI364_18000 PF01584 CheW-like domain GI364_18005 PF00672 HAMP domain GI364_18005 PF02743 Cache domain GI364_18005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GI364_18010 PF08830 Protein of unknown function (DUF1806) GI364_18015 PF02585 GlcNAc-PI de-N-acetylase GI364_18030 PF00510 Cytochrome c oxidase subunit III GI364_18035 PF00115 Cytochrome C and Quinol oxidase polypeptide I GI364_18040 PF02790 Cytochrome C oxidase subunit II, transmembrane domain GI364_18045 PF00753 Metallo-beta-lactamase superfamily GI364_18050 PF02790 Cytochrome C oxidase subunit II, transmembrane domain GI364_18055 PF00115 Cytochrome C and Quinol oxidase polypeptide I GI364_18060 PF00510 Cytochrome c oxidase subunit III GI364_18065 PF03626 Prokaryotic Cytochrome C oxidase subunit IV GI364_18070 PF16177 Acetyl-coenzyme A synthetase N-terminus GI364_18070 PF00501 AMP-binding enzyme GI364_18070 PF13193 AMP-binding enzyme C-terminal domain GI364_18075 PF13180 PDZ domain GI364_18080 PF02073 Thermophilic metalloprotease (M29) GI364_18090 PF04227 Indigoidine synthase A like protein GI364_18110 PF00672 HAMP domain GI364_18110 PF00512 His Kinase A (phospho-acceptor) domain GI364_18110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_18115 PF00072 Response regulator receiver domain GI364_18115 PF00486 Transcriptional regulatory protein, C terminal GI364_18125 PF13180 PDZ domain GI364_18130 PF12704 MacB-like periplasmic core domain GI364_18130 PF02687 FtsX-like permease family GI364_18130 PF00005 ABC transporter GI364_18135 PF00005 ABC transporter GI364_18145 PF09992 Phosphodiester glycosidase GI364_18145 PF12708 Pectate lyase superfamily protein GI364_18155 PF16363 GDP-mannose 4,6 dehydratase GI364_18165 PF00106 short chain dehydrogenase GI364_18175 PF04264 YceI-like domain GI364_18180 PF02678 Pirin GI364_18180 PF05726 Pirin C-terminal cupin domain GI364_18190 PF13302 Acetyltransferase (GNAT) domain GI364_18255 PF02371 Transposase IS116/IS110/IS902 family GI364_18255 PF01548 Transposase GI364_18280 PF00857 Isochorismatase family GI364_18310 PF01348 Type II intron maturase GI364_18310 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) GI364_18340 PF03193 RsgA GTPase GI364_18360 PF07690 Major Facilitator Superfamily GI364_18365 PF00440 Bacterial regulatory proteins, tetR family GI364_18365 PF17925 Tetracyclin repressor-like, C-terminal domain GI364_18375 PF00485 Phosphoribulokinase / Uridine kinase family GI364_18390 PF00171 Aldehyde dehydrogenase family GI364_18395 PF00664 ABC transporter transmembrane region GI364_18395 PF00005 ABC transporter GI364_18400 PF00005 ABC transporter GI364_18400 PF00664 ABC transporter transmembrane region GI364_18410 PF01969 Protein of unknown function DUF111 GI364_18415 PF00731 AIR carboxylase GI364_18420 PF03824 High-affinity nickel-transport protein GI364_18425 PF02540 NAD synthase GI364_18435 PF00248 Aldo/keto reductase family GI364_18440 PF00248 Aldo/keto reductase family GI364_18445 PF01638 HxlR-like helix-turn-helix GI364_18450 PF02589 LUD domain GI364_18450 PF13183 4Fe-4S dicluster domain GI364_18450 PF11870 Domain of unknown function (DUF3390) GI364_18455 PF11870 Domain of unknown function (DUF3390) GI364_18455 PF13183 4Fe-4S dicluster domain GI364_18455 PF02589 LUD domain GI364_18460 PF02754 Cysteine-rich domain GI364_18465 PF07729 FCD domain GI364_18465 PF00392 Bacterial regulatory proteins, gntR family GI364_18470 PF02913 FAD linked oxidases, C-terminal domain GI364_18470 PF01565 FAD binding domain GI364_18475 PF13183 4Fe-4S dicluster domain GI364_18475 PF02754 Cysteine-rich domain GI364_18480 PF01565 FAD binding domain GI364_18480 PF02913 FAD linked oxidases, C-terminal domain GI364_18485 PF00005 ABC transporter GI364_18495 PF00107 Zinc-binding dehydrogenase GI364_18495 PF08240 Alcohol dehydrogenase GroES-like domain GI364_18500 PF00480 ROK family GI364_18515 PF12849 PBP superfamily domain GI364_18520 PF13472 GDSL-like Lipase/Acylhydrolase family GI364_18525 PF01522 Polysaccharide deacetylase GI364_18530 PF01229 Glycosyl hydrolases family 39 GI364_18535 PF01270 Glycosyl hydrolases family 8 GI364_18540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_18545 PF12833 Helix-turn-helix domain GI364_18550 PF00005 ABC transporter GI364_18550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_18555 PF00005 ABC transporter GI364_18555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_18560 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18560 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_18565 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18575 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GI364_18575 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GI364_18580 PF00480 ROK family GI364_18590 PF00107 Zinc-binding dehydrogenase GI364_18590 PF08240 Alcohol dehydrogenase GroES-like domain GI364_18595 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18600 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18605 PF01547 Bacterial extracellular solute-binding protein GI364_18610 PF00455 DeoR C terminal sensor domain GI364_18610 PF08220 DeoR-like helix-turn-helix domain GI364_18615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GI364_18615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GI364_18630 PF07477 Glycosyl hydrolase family 67 C-terminus GI364_18630 PF07488 Glycosyl hydrolase family 67 middle domain GI364_18630 PF03648 Glycosyl hydrolase family 67 N-terminus GI364_18640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_18640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_18645 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18650 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18655 PF13416 Bacterial extracellular solute-binding protein GI364_18660 PF03786 D-mannonate dehydratase (UxuA) GI364_18670 PF00392 Bacterial regulatory proteins, gntR family GI364_18670 PF07729 FCD domain GI364_18680 PF12729 Four helix bundle sensory module for signal transduction GI364_18680 PF00672 HAMP domain GI364_18680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GI364_18685 PF02311 AraC-like ligand binding domain GI364_18685 PF12833 Helix-turn-helix domain GI364_18700 PF00295 Glycosyl hydrolases family 28 GI364_18705 PF08220 DeoR-like helix-turn-helix domain GI364_18705 PF00455 DeoR C terminal sensor domain GI364_18710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GI364_18710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GI364_18715 PF02614 Glucuronate isomerase GI364_18720 PF01081 KDPG and KHG aldolase GI364_18725 PF08666 SAF domain GI364_18725 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus GI364_18730 PF00356 Bacterial regulatory proteins, lacI family GI364_18735 PF08125 Mannitol dehydrogenase C-terminal domain GI364_18735 PF01232 Mannitol dehydrogenase Rossmann domain GI364_18740 PF08220 DeoR-like helix-turn-helix domain GI364_18740 PF00455 DeoR C terminal sensor domain GI364_18745 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GI364_18755 PF03480 Bacterial extracellular solute-binding protein, family 7 GI364_18760 PF00480 ROK family GI364_18760 PF01325 Iron dependent repressor, N-terminal DNA binding domain GI364_18765 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18770 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18780 PF00288 GHMP kinases N terminal domain GI364_18780 PF10509 Galactokinase galactose-binding signature GI364_18780 PF08544 GHMP kinases C terminal GI364_18785 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain GI364_18785 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain GI364_18790 PF00455 DeoR C terminal sensor domain GI364_18790 PF08220 DeoR-like helix-turn-helix domain GI364_18800 PF00232 Glycosyl hydrolase family 1 GI364_18805 PF01547 Bacterial extracellular solute-binding protein GI364_18810 PF00480 ROK family GI364_18825 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term GI364_18825 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GI364_18835 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18840 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18850 PF07005 Sugar-binding N-terminal domain GI364_18850 PF17042 Nucleotide-binding C-terminal domain GI364_18855 PF02929 Beta galactosidase small chain GI364_18855 PF02836 Glycosyl hydrolases family 2, TIM barrel domain GI364_18855 PF02837 Glycosyl hydrolases family 2, sugar binding domain GI364_18855 PF16353 Domain of unknown function(DUF4981) GI364_18855 PF00703 Glycosyl hydrolases family 2 GI364_18860 PF02449 Beta-galactosidase GI364_18860 PF08532 Beta-galactosidase trimerisation domain GI364_18860 PF08533 Beta-galactosidase C-terminal domain GI364_18880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_18880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_18895 PF02515 CoA-transferase family III GI364_18910 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18915 PF00528 Binding-protein-dependent transport system inner membrane component GI364_18940 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain GI364_18940 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain GI364_18955 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain GI364_18955 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain GI364_18955 PF08531 Alpha-L-rhamnosidase N-terminal domain GI364_18955 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain GI364_18960 PF08531 Alpha-L-rhamnosidase N-terminal domain GI364_18960 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain GI364_18960 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain GI364_18960 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain GI364_18965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_18965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_18970 PF00455 DeoR C terminal sensor domain GI364_18970 PF08220 DeoR-like helix-turn-helix domain GI364_18975 PF01261 Xylose isomerase-like TIM barrel GI364_18980 PF00596 Class II Aldolase and Adducin N-terminal domain GI364_18985 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GI364_18985 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GI364_18990 PF00248 Aldo/keto reductase family GI364_18995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GI364_18995 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GI364_19000 PF02581 Thiamine monophosphate synthase GI364_19005 PF13378 Enolase C-terminal domain-like GI364_19005 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GI364_19010 PF00923 Transaldolase/Fructose-6-phosphate aldolase GI364_19015 PF07690 Major Facilitator Superfamily GI364_19025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GI364_19025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GI364_19030 PF01261 Xylose isomerase-like TIM barrel GI364_19035 PF02733 Dak1 domain GI364_19040 PF02734 DAK2 domain GI364_19045 PF00121 Triosephosphate isomerase GI364_19050 PF08220 DeoR-like helix-turn-helix domain GI364_19050 PF00455 DeoR C terminal sensor domain GI364_19060 PF00392 Bacterial regulatory proteins, gntR family GI364_19065 PF00106 short chain dehydrogenase GI364_19070 PF13685 Iron-containing alcohol dehydrogenase GI364_19075 PF06964 Alpha-L-arabinofuranosidase C-terminal domain GI364_19080 PF00528 Binding-protein-dependent transport system inner membrane component GI364_19085 PF00528 Binding-protein-dependent transport system inner membrane component GI364_19085 PF14785 Maltose transport system permease protein MalF P2 domain GI364_19095 PF07944 Beta-L-arabinofuranosidase, GH127 GI364_19100 PF00528 Binding-protein-dependent transport system inner membrane component GI364_19105 PF00528 Binding-protein-dependent transport system inner membrane component GI364_19120 PF00356 Bacterial regulatory proteins, lacI family GI364_19125 PF04616 Glycosyl hydrolases family 43 GI364_19130 PF16874 Glycosyl hydrolase family 36 C-terminal domain GI364_19130 PF16875 Glycosyl hydrolase family 36 N-terminal domain GI364_19140 PF00528 Binding-protein-dependent transport system inner membrane component GI364_19145 PF00528 Binding-protein-dependent transport system inner membrane component GI364_19150 PF00356 Bacterial regulatory proteins, lacI family GI364_19155 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) GI364_19170 PF00239 Resolvase, N terminal domain GI364_19170 PF13408 Recombinase zinc beta ribbon domain GI364_19170 PF07508 Recombinase GI364_19210 PF01464 Transglycosylase SLT domain GI364_19210 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GI364_19215 PF01121 Dephospho-CoA kinase GI364_19220 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain GI364_19220 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain GI364_19220 PF06827 Zinc finger found in FPG and IleRS GI364_19225 PF01367 5'-3' exonuclease, C-terminal SAM fold GI364_19225 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GI364_19225 PF00476 DNA polymerase family A GI364_19230 PF00056 lactate/malate dehydrogenase, NAD binding domain GI364_19230 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain GI364_19235 PF00180 Isocitrate/isopropylmalate dehydrogenase GI364_19240 PF00672 HAMP domain GI364_19240 PF00512 His Kinase A (phospho-acceptor) domain GI364_19240 PF16527 Two-component sensor protein CpxA, periplasmic domain GI364_19240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_19245 PF00072 Response regulator receiver domain GI364_19245 PF00486 Transcriptional regulatory protein, C terminal GI364_19250 PF00579 tRNA synthetases class I (W and Y) GI364_19255 PF02887 Pyruvate kinase, alpha/beta domain GI364_19255 PF00391 PEP-utilising enzyme, mobile domain GI364_19255 PF00224 Pyruvate kinase, barrel domain GI364_19260 PF00365 Phosphofructokinase GI364_19265 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit GI364_19270 PF01039 Carboxyl transferase domain GI364_19270 PF17848 Acetyl-coA carboxylase zinc finger domain GI364_19280 PF04608 Phosphatidylglycerophosphatase A GI364_19285 PF01336 OB-fold nucleic acid binding domain GI364_19285 PF02811 PHP domain GI364_19285 PF07733 Bacterial DNA polymerase III alpha NTPase domain GI364_19285 PF14579 Helix-hairpin-helix motif GI364_19285 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GI364_19290 PF07085 DRTGG domain GI364_19290 PF03061 Thioesterase superfamily GI364_19290 PF00392 Bacterial regulatory proteins, gntR family GI364_19290 PF00571 CBS domain GI364_19310 PF02581 Thiamine monophosphate synthase GI364_19315 PF02110 Hydroxyethylthiazole kinase family GI364_19320 PF08543 Phosphomethylpyrimidine kinase GI364_19325 PF00291 Pyridoxal-phosphate dependent enzyme GI364_19330 PF07883 Cupin domain GI364_19330 PF01381 Helix-turn-helix GI364_19345 PF01316 Arginine repressor, DNA binding domain GI364_19345 PF02863 Arginine repressor, C-terminal domain GI364_19350 PF10502 Signal peptidase, peptidase S26 GI364_19355 PF11798 IMS family HHH motif GI364_19355 PF11799 impB/mucB/samB family C-terminal domain GI364_19355 PF00817 impB/mucB/samB family GI364_19365 PF11588 Protein of unknown function (DUF3243) GI364_19375 PF06133 Control of competence regulator ComK, YlbF/YmcA GI364_19380 PF01152 Bacterial-like globin GI364_19390 PF06508 Queuosine biosynthesis protein QueC GI364_19395 PF00133 tRNA synthetases class I (I, L, M and V) GI364_19395 PF08264 Anticodon-binding domain of tRNA GI364_19405 PF00885 6,7-dimethyl-8-ribityllumazine synthase GI364_19410 PF00925 GTP cyclohydrolase II GI364_19410 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GI364_19415 PF00677 Lumazine binding domain GI364_19420 PF01872 RibD C-terminal domain GI364_19420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GI364_19425 PF00132 Bacterial transferase hexapeptide (six repeats) GI364_19430 PF01566 Natural resistance-associated macrophage protein GI364_19435 PF07687 Peptidase dimerisation domain GI364_19435 PF01546 Peptidase family M20/M25/M40 GI364_19445 PF06018 CodY GAF-like domain GI364_19445 PF08222 CodY helix-turn-helix domain GI364_19450 PF00999 Sodium/hydrogen exchanger family GI364_19450 PF02080 TrkA-C domain GI364_19450 PF02254 TrkA-N domain GI364_19455 PF01371 Trp repressor protein GI364_19460 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GI364_19460 PF02817 e3 binding domain GI364_19460 PF00364 Biotin-requiring enzyme GI364_19475 PF02683 Cytochrome C biogenesis protein transmembrane region GI364_19480 PF00512 His Kinase A (phospho-acceptor) domain GI364_19480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_19485 PF00486 Transcriptional regulatory protein, C terminal GI364_19485 PF00072 Response regulator receiver domain GI364_19505 PF01475 Ferric uptake regulator family GI364_19515 PF00005 ABC transporter GI364_19525 PF00950 ABC 3 transport family GI364_19535 PF12706 Beta-lactamase superfamily domain GI364_19550 PF13732 Domain of unknown function (DUF4162) GI364_19550 PF00005 ABC transporter GI364_19585 PF07690 Major Facilitator Superfamily GI364_19595 PF04055 Radical SAM superfamily GI364_19595 PF13186 Iron-sulfur cluster-binding domain GI364_19605 PF00083 Sugar (and other) transporter GI364_19605 PF07690 Major Facilitator Superfamily GI364_19610 PF01209 ubiE/COQ5 methyltransferase family GI364_19620 PF03466 LysR substrate binding domain GI364_19620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_19630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GI364_19630 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_19705 PF01381 Helix-turn-helix GI364_19745 PF00589 Phage integrase family GI364_19745 PF14659 Phage integrase, N-terminal SAM-like domain GI364_19760 PF03641 Possible lysine decarboxylase GI364_19765 PF00326 Prolyl oligopeptidase family GI364_19770 PF13419 Haloacid dehalogenase-like hydrolase GI364_19800 PF13302 Acetyltransferase (GNAT) domain GI364_19810 PF07517 SecA DEAD-like domain GI364_19810 PF01043 SecA preprotein cross-linking domain GI364_19810 PF07516 SecA Wing and Scaffold domain GI364_19820 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus GI364_19820 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GI364_19825 PF00535 Glycosyl transferase family 2 GI364_19830 PF00535 Glycosyl transferase family 2 GI364_19830 PF13181 Tetratricopeptide repeat GI364_19845 PF00669 Bacterial flagellin N-terminal helical region GI364_19845 PF00700 Bacterial flagellin C-terminal helical region GI364_19845 PF07196 Flagellin hook IN motif GI364_19855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GI364_19855 PF00460 Flagella basal body rod protein GI364_19870 PF04545 Sigma-70, region 4 GI364_19870 PF04539 Sigma-70 region 3 GI364_19870 PF04542 Sigma-70 region 2 GI364_19885 PF03061 Thioesterase superfamily GI364_19890 PF00156 Phosphoribosyl transferase domain GI364_19895 PF02645 Uncharacterised protein, DegV family COG1307 GI364_19900 PF16736 Single Cache-like GI364_19900 PF00989 PAS fold GI364_19900 PF00512 His Kinase A (phospho-acceptor) domain GI364_19900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_19905 PF00072 Response regulator receiver domain GI364_19905 PF00486 Transcriptional regulatory protein, C terminal GI364_19920 PF00196 Bacterial regulatory proteins, luxR family GI364_19920 PF00072 Response regulator receiver domain GI364_19925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_19925 PF07730 Histidine kinase GI364_19925 PF05384 Sensor protein DegS GI364_19930 PF02773 S-adenosylmethionine synthetase, C-terminal domain GI364_19930 PF02772 S-adenosylmethionine synthetase, central domain GI364_19930 PF00438 S-adenosylmethionine synthetase, N-terminal domain GI364_19935 PF00269 Small, acid-soluble spore proteins, alpha/beta type GI364_19940 PF03808 Glycosyl transferase WecB/TagA/CpsF family GI364_19950 PF00313 'Cold-shock' DNA-binding domain GI364_19955 PF07690 Major Facilitator Superfamily GI364_19965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GI364_19965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GI364_19965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GI364_19965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GI364_19970 PF00994 Probable molybdopterin binding domain GI364_19970 PF01967 MoaC family GI364_19985 PF00005 ABC transporter GI364_19990 PF00005 ABC transporter GI364_19995 PF00892 EamA-like transporter family GI364_20000 PF00698 Acyl transferase domain GI364_20000 PF14765 Polyketide synthase dehydratase GI364_20000 PF00550 Phosphopantetheine attachment site GI364_20000 PF08659 KR domain GI364_20000 PF08240 Alcohol dehydrogenase GroES-like domain GI364_20000 PF02801 Beta-ketoacyl synthase, C-terminal domain GI364_20000 PF00109 Beta-ketoacyl synthase, N-terminal domain GI364_20000 PF00107 Zinc-binding dehydrogenase GI364_20000 PF16197 Ketoacyl-synthetase C-terminal extension GI364_20005 PF00356 Bacterial regulatory proteins, lacI family GI364_20010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GI364_20010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GI364_20015 PF07690 Major Facilitator Superfamily GI364_20020 PF01548 Transposase GI364_20020 PF02371 Transposase IS116/IS110/IS902 family GI364_20025 PF04241 Protein of unknown function (DUF423) GI364_20030 PF00311 Phosphoenolpyruvate carboxylase GI364_20040 PF01566 Natural resistance-associated macrophage protein GI364_20055 PF01925 Sulfite exporter TauE/SafE GI364_20085 PF00578 AhpC/TSA family GI364_20090 PF17092 Penicillin-binding protein OB-like domain GI364_20090 PF00905 Penicillin binding protein transpeptidase domain GI364_20090 PF00912 Transglycosylase GI364_20095 PF01820 D-ala D-ala ligase N-terminus GI364_20095 PF07478 D-ala D-ala ligase C-terminus GI364_20100 PF02875 Mur ligase family, glutamate ligase domain GI364_20100 PF01225 Mur ligase family, catalytic domain GI364_20100 PF08245 Mur ligase middle domain GI364_20105 PF00528 Binding-protein-dependent transport system inner membrane component GI364_20110 PF00528 Binding-protein-dependent transport system inner membrane component GI364_20115 PF12849 PBP superfamily domain GI364_20120 PF01895 PhoU domain GI364_20125 PF00005 ABC transporter GI364_20130 PF07690 Major Facilitator Superfamily GI364_20140 PF08281 Sigma-70, region 4 GI364_20140 PF04542 Sigma-70 region 2 GI364_20145 PF00583 Acetyltransferase (GNAT) family GI364_20145 PF00795 Carbon-nitrogen hydrolase GI364_20150 PF00781 Diacylglycerol kinase catalytic domain GI364_20165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_20165 PF03466 LysR substrate binding domain GI364_20175 PF00465 Iron-containing alcohol dehydrogenase GI364_20180 PF00171 Aldehyde dehydrogenase family GI364_20185 PF00204 DNA gyrase B GI364_20185 PF01751 Toprim domain GI364_20185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_20185 PF00986 DNA gyrase B subunit, carboxyl terminus GI364_20190 PF00521 DNA gyrase/topoisomerase IV, subunit A GI364_20190 PF03989 DNA gyrase C-terminal domain, beta-propeller GI364_20195 PF00285 Citrate synthase, C-terminal domain GI364_20200 PF06039 Malate:quinone oxidoreductase (Mqo) GI364_20205 PF01554 MatE GI364_20210 PF03466 LysR substrate binding domain GI364_20210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_20215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GI364_20215 PF00205 Thiamine pyrophosphate enzyme, central domain GI364_20215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GI364_20220 PF03480 Bacterial extracellular solute-binding protein, family 7 GI364_20235 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GI364_20240 PF02355 Protein export membrane protein GI364_20245 PF02355 Protein export membrane protein GI364_20255 PF04542 Sigma-70 region 2 GI364_20255 PF08281 Sigma-70, region 4 GI364_20270 PF00528 Binding-protein-dependent transport system inner membrane component GI364_20275 PF00528 Binding-protein-dependent transport system inner membrane component GI364_20285 PF00872 Transposase, Mutator family GI364_20290 PF13419 Haloacid dehalogenase-like hydrolase GI364_20300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_20305 PF00528 Binding-protein-dependent transport system inner membrane component GI364_20310 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_20310 PF00528 Binding-protein-dependent transport system inner membrane component GI364_20315 PF00005 ABC transporter GI364_20315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_20320 PF00005 ABC transporter GI364_20320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_20345 PF02361 Cobalt transport protein GI364_20350 PF00005 ABC transporter GI364_20380 PF00392 Bacterial regulatory proteins, gntR family GI364_20385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GI364_20385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GI364_20390 PF00083 Sugar (and other) transporter GI364_20395 PF00596 Class II Aldolase and Adducin N-terminal domain GI364_20400 PF02610 L-arabinose isomerase GI364_20400 PF11762 L-arabinose isomerase C-terminal domain GI364_20410 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_20425 PF00916 Sulfate permease family GI364_20425 PF01740 STAS domain GI364_20430 PF01915 Glycosyl hydrolase family 3 C-terminal domain GI364_20430 PF14310 Fibronectin type III-like domain GI364_20430 PF00933 Glycosyl hydrolase family 3 N terminal domain GI364_20435 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) GI364_20435 PF07581 The GLUG motif GI364_20450 PF00990 Diguanylate cyclase, GGDEF domain GI364_20450 PF03707 Bacterial signalling protein N terminal repeat GI364_20450 PF00563 EAL domain GI364_20455 PF02386 Cation transport protein GI364_20465 PF00313 'Cold-shock' DNA-binding domain GI364_20475 PF00487 Fatty acid desaturase GI364_20480 PF00248 Aldo/keto reductase family GI364_20485 PF00248 Aldo/keto reductase family GI364_20490 PF06719 AraC-type transcriptional regulator N-terminus GI364_20490 PF12833 Helix-turn-helix domain GI364_20495 PF00005 ABC transporter GI364_20495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_20500 PF00005 ABC transporter GI364_20500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_20505 PF02789 Cytosol aminopeptidase family, N-terminal domain GI364_20505 PF00883 Cytosol aminopeptidase family, catalytic domain GI364_20510 PF00528 Binding-protein-dependent transport system inner membrane component GI364_20515 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_20515 PF00528 Binding-protein-dependent transport system inner membrane component GI364_20520 PF07676 WD40-like Beta Propeller Repeat GI364_20520 PF00326 Prolyl oligopeptidase family GI364_20525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_20540 PF01177 Asp/Glu/Hydantoin racemase GI364_20565 PF18030 RimK PreATP-grasp domain GI364_20565 PF08443 RimK-like ATP-grasp domain GI364_20570 PF08443 RimK-like ATP-grasp domain GI364_20570 PF18030 RimK PreATP-grasp domain GI364_20580 PF12848 ABC transporter GI364_20580 PF00005 ABC transporter GI364_20580 PF16326 ABC transporter C-terminal domain GI364_20585 PF01209 ubiE/COQ5 methyltransferase family GI364_20590 PF03190 Protein of unknown function, DUF255 GI364_20595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GI364_20595 PF03466 LysR substrate binding domain GI364_20630 PF00483 Nucleotidyl transferase GI364_20635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_20635 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_20640 PF02348 Cytidylyltransferase GI364_20655 PF08666 SAF domain GI364_20655 PF03102 NeuB family GI364_20660 PF02350 UDP-N-acetylglucosamine 2-epimerase GI364_20665 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GI364_20670 PF16363 GDP-mannose 4,6 dehydratase GI364_20675 PF00174 Oxidoreductase molybdopterin binding domain GI364_20680 PF01170 Putative RNA methylase family UPF0020 GI364_20680 PF02926 THUMP domain GI364_20690 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_20700 PF01641 SelR domain GI364_20705 PF08240 Alcohol dehydrogenase GroES-like domain GI364_20705 PF00107 Zinc-binding dehydrogenase GI364_20715 PF00106 short chain dehydrogenase GI364_20730 PF00313 'Cold-shock' DNA-binding domain GI364_20740 PF00005 ABC transporter GI364_20745 PF00781 Diacylglycerol kinase catalytic domain GI364_20750 PF13529 Peptidase_C39 like family GI364_20755 PF00196 Bacterial regulatory proteins, luxR family GI364_20755 PF00072 Response regulator receiver domain GI364_20760 PF07730 Histidine kinase GI364_20760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_20765 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_20770 PF01654 Cytochrome bd terminal oxidase subunit I GI364_20775 PF02322 Cytochrome bd terminal oxidase subunit II GI364_20780 PF00501 AMP-binding enzyme GI364_20805 PF00355 Rieske [2Fe-2S] domain GI364_20805 PF01266 FAD dependent oxidoreductase GI364_20810 PF01252 Signal peptidase (SPase) II GI364_20825 PF00392 Bacterial regulatory proteins, gntR family GI364_20850 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase GI364_20855 PF13520 Amino acid permease GI364_20880 PF08241 Methyltransferase domain GI364_20890 PF00269 Small, acid-soluble spore proteins, alpha/beta type GI364_20905 PF00291 Pyridoxal-phosphate dependent enzyme GI364_20910 PF01022 Bacterial regulatory protein, arsR family GI364_20920 PF02374 Anion-transporting ATPase GI364_20925 PF02374 Anion-transporting ATPase GI364_20935 PF00672 HAMP domain GI364_20935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GI364_20935 PF02743 Cache domain GI364_20960 PF07690 Major Facilitator Superfamily GI364_20970 PF13411 MerR HTH family regulatory protein GI364_20970 PF07739 TipAS antibiotic-recognition domain GI364_20980 PF01638 HxlR-like helix-turn-helix GI364_20985 PF00753 Metallo-beta-lactamase superfamily GI364_20990 PF13411 MerR HTH family regulatory protein GI364_21000 PF03358 NADPH-dependent FMN reductase GI364_21015 PF12697 Alpha/beta hydrolase family GI364_21025 PF13302 Acetyltransferase (GNAT) domain GI364_21030 PF00127 Copper binding proteins, plastocyanin/azurin family GI364_21035 PF13538 UvrD-like helicase C-terminal domain GI364_21050 PF01738 Dienelactone hydrolase family GI364_21055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GI364_21060 PF01638 HxlR-like helix-turn-helix GI364_21065 PF05175 Methyltransferase small domain GI364_21065 PF17827 PrmC N-terminal domain GI364_21070 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GI364_21090 PF13302 Acetyltransferase (GNAT) domain GI364_21105 PF07687 Peptidase dimerisation domain GI364_21105 PF01546 Peptidase family M20/M25/M40 GI364_21110 PF00753 Metallo-beta-lactamase superfamily GI364_21125 PF13411 MerR HTH family regulatory protein GI364_21135 PF01544 CorA-like Mg2+ transporter protein GI364_21180 PF13302 Acetyltransferase (GNAT) domain GI364_21185 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) GI364_21185 PF01348 Type II intron maturase GI364_21200 PF07508 Recombinase GI364_21200 PF00239 Resolvase, N terminal domain GI364_21200 PF13408 Recombinase zinc beta ribbon domain GI364_21295 PF00145 C-5 cytosine-specific DNA methylase GI364_21350 PF00583 Acetyltransferase (GNAT) family GI364_21360 PF00004 ATPase family associated with various cellular activities (AAA) GI364_21365 PF00082 Subtilase family GI364_21380 PF11426 Tn7 transposition regulator TnsC GI364_21380 PF13401 AAA domain GI364_21385 PF00665 Integrase core domain GI364_21390 PF08722 TnsA endonuclease N terminal GI364_21390 PF08721 TnsA endonuclease C terminal GI364_21395 PF01979 Amidohydrolase family GI364_21400 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GI364_21405 PF00701 Dihydrodipicolinate synthetase family GI364_21410 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase GI364_21430 PF03176 MMPL family GI364_21435 PF01553 Acyltransferase GI364_21440 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GI364_21440 PF00925 GTP cyclohydrolase II GI364_21445 PF17932 Tetracyclin repressor-like, C-terminal domain GI364_21445 PF00440 Bacterial regulatory proteins, tetR family GI364_21450 PF14319 Transposase zinc-binding domain GI364_21450 PF04986 Putative transposase GI364_21455 PF00589 Phage integrase family GI364_21455 PF02899 Phage integrase, N-terminal SAM-like domain GI364_21465 PF00005 ABC transporter GI364_21465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_21470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GI364_21470 PF00005 ABC transporter GI364_21475 PF12911 N-terminal TM domain of oligopeptide transport permease C GI364_21475 PF00528 Binding-protein-dependent transport system inner membrane component GI364_21480 PF00528 Binding-protein-dependent transport system inner membrane component GI364_21485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GI364_21490 PF01418 Helix-turn-helix domain, rpiR family GI364_21490 PF01380 SIS domain GI364_21495 PF00480 ROK family GI364_21500 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GI364_21500 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GI364_21520 PF00005 ABC transporter GI364_21530 PF02583 Metal-sensitive transcriptional repressor GI364_21560 PF00196 Bacterial regulatory proteins, luxR family GI364_21560 PF00072 Response regulator receiver domain GI364_21575 PF02583 Metal-sensitive transcriptional repressor GI364_21580 PF00403 Heavy-metal-associated domain GI364_21585 PF01027 Inhibitor of apoptosis-promoting Bax1 GI364_21595 PF00665 Integrase core domain GI364_21600 PF02899 Phage integrase, N-terminal SAM-like domain GI364_21600 PF00589 Phage integrase family GI364_21605 PF02899 Phage integrase, N-terminal SAM-like domain GI364_21605 PF00589 Phage integrase family GI364_21610 PF00589 Phage integrase family GI364_21610 PF02899 Phage integrase, N-terminal SAM-like domain GI364_21615 PF00665 Integrase core domain GI364_21620 PF01695 IstB-like ATP binding protein GI364_21630 PF01638 HxlR-like helix-turn-helix GI364_21645 PF00033 Cytochrome b/b6/petB GI364_21650 PF10502 Signal peptidase, peptidase S26 GI364_21665 PF00127 Copper binding proteins, plastocyanin/azurin family GI364_21675 PF04012 PspA/IM30 family GI364_21685 PF18719 ArlS sensor domain GI364_21685 PF00512 His Kinase A (phospho-acceptor) domain GI364_21685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_21690 PF00486 Transcriptional regulatory protein, C terminal GI364_21690 PF00072 Response regulator receiver domain GI364_21700 PF00578 AhpC/TSA family GI364_21705 PF02683 Cytochrome C biogenesis protein transmembrane region GI364_21715 PF01790 Prolipoprotein diacylglyceryl transferase GI364_21725 PF01209 ubiE/COQ5 methyltransferase family GI364_21745 PF00578 AhpC/TSA family GI364_21765 PF02583 Metal-sensitive transcriptional repressor GI364_21780 PF09551 Stage II sporulation protein R (spore_II_R) GI364_21785 PF13529 Peptidase_C39 like family GI364_21790 PF01022 Bacterial regulatory protein, arsR family GI364_21795 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_21795 PF00403 Heavy-metal-associated domain GI364_21795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GI364_21800 PF00266 Aminotransferase class-V GI364_21805 PF07690 Major Facilitator Superfamily GI364_21815 PF00581 Rhodanese-like domain GI364_21815 PF01206 Sulfurtransferase TusA GI364_21825 PF01526 Tn3 transposase DDE domain GI364_21825 PF13700 Domain of unknown function (DUF4158) GI364_21830 PF02899 Phage integrase, N-terminal SAM-like domain GI364_21830 PF00589 Phage integrase family GI364_21845 PF05504 Spore germination B3/ GerAC like, C-terminal GI364_21850 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_21860 PF15978 Tn7-like transposition protein D GI364_21860 PF06527 TniQ GI364_21865 PF11426 Tn7 transposition regulator TnsC GI364_21865 PF13401 AAA domain GI364_21870 PF00665 Integrase core domain GI364_21880 PF01380 SIS domain GI364_21885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GI364_21885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GI364_21885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GI364_21885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GI364_21895 PF02457 DisA bacterial checkpoint controller nucleotide-binding GI364_21905 PF00491 Arginase family GI364_21915 PF01522 Polysaccharide deacetylase GI364_21925 PF17898 Spore germination GerD central core domain GI364_21930 PF10609 NUBPL iron-transfer P-loop NTPase GI364_21940 PF01520 N-acetylmuramoyl-L-alanine amidase GI364_21940 PF08239 Bacterial SH3 domain GI364_21945 PF00380 Ribosomal protein S9/S16 GI364_21950 PF00572 Ribosomal protein L13 GI364_21955 PF01416 tRNA pseudouridine synthase GI364_21960 PF01196 Ribosomal protein L17 GI364_21965 PF01000 RNA polymerase Rpb3/RpoA insert domain GI364_21965 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain GI364_21965 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain GI364_21970 PF00163 Ribosomal protein S4/S9 N-terminal domain GI364_21970 PF01479 S4 domain GI364_21975 PF00411 Ribosomal protein S11 GI364_21980 PF00416 Ribosomal protein S13/S18 GI364_21985 PF00444 Ribosomal protein L36 GI364_21990 PF01176 Translation initiation factor 1A / IF-1 GI364_22000 PF05191 Adenylate kinase, active site lid GI364_22005 PF00344 SecY translocase GI364_22010 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A GI364_22015 PF00327 Ribosomal protein L30p/L7e GI364_22020 PF03719 Ribosomal protein S5, C-terminal domain GI364_22020 PF00333 Ribosomal protein S5, N-terminal domain GI364_22025 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast GI364_22030 PF00347 Ribosomal protein L6 GI364_22035 PF00410 Ribosomal protein S8 GI364_22040 PF00253 Ribosomal protein S14p/S29e GI364_22045 PF00281 Ribosomal protein L5 GI364_22045 PF00673 ribosomal L5P family C-terminus GI364_22050 PF00467 KOW motif GI364_22050 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 GI364_22055 PF00238 Ribosomal protein L14p/L23e GI364_22060 PF00366 Ribosomal protein S17 GI364_22065 PF00831 Ribosomal L29 protein GI364_22070 PF00252 Ribosomal protein L16p/L10e GI364_22075 PF07650 KH domain GI364_22075 PF00189 Ribosomal protein S3, C-terminal domain GI364_22080 PF00237 Ribosomal protein L22p/L17e GI364_22085 PF00203 Ribosomal protein S19 GI364_22090 PF00181 Ribosomal Proteins L2, RNA binding domain GI364_22090 PF03947 Ribosomal Proteins L2, C-terminal domain GI364_22095 PF00276 Ribosomal protein L23 GI364_22100 PF00573 Ribosomal protein L4/L1 family GI364_22105 PF00297 Ribosomal protein L3 GI364_22110 PF00338 Ribosomal protein S10p/S20e GI364_22115 PF03144 Elongation factor Tu domain 2 GI364_22115 PF00009 Elongation factor Tu GTP binding domain GI364_22115 PF03143 Elongation factor Tu C-terminal domain GI364_22120 PF14492 Elongation Factor G, domain II GI364_22120 PF03144 Elongation factor Tu domain 2 GI364_22120 PF00679 Elongation factor G C-terminus GI364_22120 PF00009 Elongation factor Tu GTP binding domain GI364_22120 PF03764 Elongation factor G, domain IV GI364_22125 PF00177 Ribosomal protein S7p/S5e GI364_22130 PF00164 Ribosomal protein S12/S23 GI364_22135 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family GI364_22140 PF04983 RNA polymerase Rpb1, domain 3 GI364_22140 PF04998 RNA polymerase Rpb1, domain 5 GI364_22140 PF05000 RNA polymerase Rpb1, domain 4 GI364_22140 PF00623 RNA polymerase Rpb1, domain 2 GI364_22140 PF04997 RNA polymerase Rpb1, domain 1 GI364_22145 PF04560 RNA polymerase Rpb2, domain 7 GI364_22145 PF04561 RNA polymerase Rpb2, domain 2 GI364_22145 PF04565 RNA polymerase Rpb2, domain 3 GI364_22145 PF04563 RNA polymerase beta subunit GI364_22145 PF00562 RNA polymerase Rpb2, domain 6 GI364_22145 PF10385 RNA polymerase beta subunit external 1 domain GI364_22150 PF05175 Methyltransferase small domain GI364_22155 PF00542 Ribosomal protein L7/L12 C-terminal domain GI364_22155 PF16320 Ribosomal protein L7/L12 dimerisation domain GI364_22160 PF00466 Ribosomal protein L10 GI364_22165 PF00687 Ribosomal protein L1p/L10e family GI364_22170 PF00298 Ribosomal protein L11, RNA binding domain GI364_22170 PF03946 Ribosomal protein L11, N-terminal domain GI364_22175 PF00467 KOW motif GI364_22175 PF02357 Transcription termination factor nusG GI364_22180 PF00584 SecE/Sec61-gamma subunits of protein translocation complex GI364_22185 PF00471 Ribosomal protein L33 GI364_22190 PF08281 Sigma-70, region 4 GI364_22190 PF04542 Sigma-70 region 2 GI364_22200 PF08032 RNA 2'-O ribose methyltransferase substrate binding GI364_22200 PF00588 SpoU rRNA Methylase family GI364_22205 PF00636 Ribonuclease III domain GI364_22210 PF09190 DALR domain GI364_22210 PF01406 tRNA synthetases class I (C) catalytic domain GI364_22215 PF00749 tRNA synthetases class I (E and Q), catalytic domain GI364_22220 PF02542 YgbB family GI364_22230 PF01066 CDP-alcohol phosphatidyltransferase GI364_22235 PF10635 DisA bacterial checkpoint controller linker region GI364_22235 PF02457 DisA bacterial checkpoint controller nucleotide-binding GI364_22240 PF18073 Rubredoxin metal binding domain GI364_22245 PF00004 ATPase family associated with various cellular activities (AAA) GI364_22245 PF07724 AAA domain (Cdc48 subfamily) GI364_22245 PF17871 AAA lid domain GI364_22245 PF02861 Clp amino terminal domain, pathogenicity island component GI364_22245 PF10431 C-terminal, D2-small domain, of ClpB protein GI364_22250 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain GI364_22255 PF02151 UvrB/uvrC motif GI364_22260 PF05848 CtsR N-terminal HTH domain GI364_22260 PF17727 CtsR C-terminal dimerization domain GI364_22265 PF00440 Bacterial regulatory proteins, tetR family GI364_22285 PF08439 Oligopeptidase F GI364_22285 PF01432 Peptidase family M3 GI364_22305 PF00512 His Kinase A (phospho-acceptor) domain GI364_22305 PF00672 HAMP domain GI364_22305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_22320 PF02843 Phosphoribosylglycinamide synthetase, C domain GI364_22320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GI364_22320 PF02844 Phosphoribosylglycinamide synthetase, N domain GI364_22325 PF01808 AICARFT/IMPCHase bienzyme GI364_22325 PF02142 MGS-like domain GI364_22330 PF00551 Formyl transferase GI364_22335 PF00586 AIR synthase related protein, N-terminal domain GI364_22335 PF02769 AIR synthase related protein, C-terminal domain GI364_22340 PF00156 Phosphoribosyl transferase domain GI364_22345 PF02769 AIR synthase related protein, C-terminal domain GI364_22345 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain GI364_22345 PF00586 AIR synthase related protein, N-terminal domain GI364_22355 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase GI364_22360 PF01259 SAICAR synthetase GI364_22365 PF10397 Adenylosuccinate lyase C-terminus GI364_22365 PF00206 Lyase GI364_22380 PF00563 EAL domain GI364_22380 PF03707 Bacterial signalling protein N terminal repeat GI364_22380 PF00990 Diguanylate cyclase, GGDEF domain GI364_22385 PF00561 alpha/beta hydrolase fold GI364_22390 PF03848 Tellurite resistance protein TehB GI364_22405 PF13302 Acetyltransferase (GNAT) domain GI364_22435 PF00005 ABC transporter GI364_22440 PF00072 Response regulator receiver domain GI364_22440 PF00196 Bacterial regulatory proteins, luxR family GI364_22445 PF07730 Histidine kinase GI364_22450 PF00860 Permease family GI364_22455 PF00117 Glutamine amidotransferase class-I GI364_22455 PF00958 GMP synthase C terminal domain GI364_22455 PF02540 NAD synthase GI364_22460 PF11992 Domain of unknown function (DUF3488) GI364_22460 PF01841 Transglutaminase-like superfamily GI364_22460 PF13559 Domain of unknown function (DUF4129) GI364_22470 PF07726 ATPase family associated with various cellular activities (AAA) GI364_22470 PF17863 AAA lid domain GI364_22480 PF00118 TCP-1/cpn60 chaperonin family GI364_22485 PF00166 Chaperonin 10 Kd subunit GI364_22490 PF00902 Sec-independent protein translocase protein (TatC) GI364_22495 PF02416 mttA/Hcf106 family GI364_22505 PF02464 Competence-damaged protein GI364_22505 PF00994 Probable molybdopterin binding domain GI364_22510 PF12804 MobA-like NTP transferase domain GI364_22515 PF01812 5-formyltetrahydrofolate cyclo-ligase family GI364_22520 PF12848 ABC transporter GI364_22520 PF16326 ABC transporter C-terminal domain GI364_22520 PF00005 ABC transporter GI364_22525 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GI364_22530 PF00528 Binding-protein-dependent transport system inner membrane component GI364_22535 PF00571 CBS domain GI364_22535 PF00005 ABC transporter GI364_22540 PF00814 Glycoprotease family GI364_22545 PF00583 Acetyltransferase (GNAT) family GI364_22550 PF00814 Glycoprotease family GI364_22555 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE GI364_22560 PF00586 AIR synthase related protein, N-terminal domain GI364_22560 PF02769 AIR synthase related protein, C-terminal domain GI364_22565 PF07969 Amidohydrolase family GI364_22590 PF07722 Peptidase C26 GI364_22595 PF05221 S-adenosyl-L-homocysteine hydrolase GI364_22595 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GI364_22600 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system GI364_22605 PF01402 Ribbon-helix-helix protein, copG family GI364_22610 PF00842 Alanine racemase, C-terminal domain GI364_22610 PF01168 Alanine racemase, N-terminal domain GI364_22625 PF01256 Carbohydrate kinase GI364_22625 PF03853 YjeF-related protein N-terminus GI364_22630 PF01648 4'-phosphopantetheinyl transferase superfamily GI364_22650 PF00326 Prolyl oligopeptidase family GI364_22655 PF00557 Metallopeptidase family M24 GI364_22665 PF04343 Protein of unknown function, DUF488 GI364_22685 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GI364_22685 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GI364_22690 PF02548 Ketopantoate hydroxymethyltransferase GI364_22695 PF02569 Pantoate-beta-alanine ligase GI364_22700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GI364_22700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GI364_22715 PF01098 Cell cycle protein GI364_22725 PF02673 Bacitracin resistance protein BacA GI364_22730 PF16338 Domain of unknown function (DUF4968) GI364_22730 PF17137 Domain of unknown function (DUF5110) GI364_22730 PF13802 Galactose mutarotase-like GI364_22730 PF01055 Glycosyl hydrolases family 31 GI364_22735 PF02903 Alpha amylase, N-terminal ig-like domain GI364_22735 PF16657 Maltogenic Amylase, C-terminal domain GI364_22735 PF00128 Alpha amylase, catalytic domain GI364_22740 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GI364_22740 PF00356 Bacterial regulatory proteins, lacI family GI364_22745 PF00528 Binding-protein-dependent transport system inner membrane component GI364_22750 PF00528 Binding-protein-dependent transport system inner membrane component GI364_22755 PF13416 Bacterial extracellular solute-binding protein GI364_22765 PF01522 Polysaccharide deacetylase GI364_22770 PF13520 Amino acid permease GI364_22775 PF00793 DAHP synthetase I family GI364_22775 PF18152 DAHP synthase ferredoxin-like domain GI364_22780 PF01047 MarR family GI364_22785 PF07690 Major Facilitator Superfamily GI364_22790 PF03447 Homoserine dehydrogenase, NAD binding domain GI364_22790 PF01958 Domain of unknown function DUF108 GI364_22795 PF07729 FCD domain GI364_22795 PF00392 Bacterial regulatory proteins, gntR family GI364_22805 PF00005 ABC transporter GI364_22810 PF00528 Binding-protein-dependent transport system inner membrane component GI364_22815 PF02417 Chromate transporter GI364_22825 PF02417 Chromate transporter GI364_22830 PF00392 Bacterial regulatory proteins, gntR family GI364_22830 PF07729 FCD domain GI364_22835 PF07729 FCD domain GI364_22835 PF00392 Bacterial regulatory proteins, gntR family GI364_22850 PF00171 Aldehyde dehydrogenase family GI364_22875 PF08281 Sigma-70, region 4 GI364_22875 PF04542 Sigma-70 region 2 GI364_22885 PF00924 Mechanosensitive ion channel GI364_22890 PF00664 ABC transporter transmembrane region GI364_22890 PF00005 ABC transporter GI364_22895 PF00005 ABC transporter GI364_22895 PF00664 ABC transporter transmembrane region GI364_22900 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GI364_22925 PF00563 EAL domain GI364_22925 PF03707 Bacterial signalling protein N terminal repeat GI364_22925 PF00990 Diguanylate cyclase, GGDEF domain GI364_22930 PF03816 Cell envelope-related transcriptional attenuator domain GI364_22945 PF07690 Major Facilitator Superfamily GI364_22960 PF02915 Rubrerythrin GI364_22965 PF01475 Ferric uptake regulator family GI364_22970 PF04143 Sulphur transport GI364_23045 PF08818 Domain of unknown function (DU1801) GI364_23065 PF01209 ubiE/COQ5 methyltransferase family GI364_23075 PF04545 Sigma-70, region 4 GI364_23090 PF12704 MacB-like periplasmic core domain GI364_23090 PF00005 ABC transporter GI364_23090 PF02687 FtsX-like permease family GI364_23110 PF13667 ThiC-associated domain GI364_23110 PF01964 Radical SAM ThiC family GI364_23110 PF02581 Thiamine monophosphate synthase GI364_23115 PF02110 Hydroxyethylthiazole kinase family GI364_23130 PF00149 Calcineurin-like phosphoesterase GI364_23140 PF03551 Transcriptional regulator PadR-like family GI364_23140 PF13847 Methyltransferase domain GI364_23165 PF00293 NUDIX domain GI364_23185 PF00356 Bacterial regulatory proteins, lacI family GI364_23190 PF01547 Bacterial extracellular solute-binding protein GI364_23195 PF00528 Binding-protein-dependent transport system inner membrane component GI364_23200 PF00528 Binding-protein-dependent transport system inner membrane component GI364_23205 PF00128 Alpha amylase, catalytic domain GI364_23210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GI364_23210 PF00672 HAMP domain GI364_23210 PF02743 Cache domain GI364_23220 PF02626 Carboxyltransferase domain, subdomain A and B GI364_23230 PF02682 Carboxyltransferase domain, subdomain C and D GI364_23235 PF03746 LamB/YcsF family GI364_23240 PF13614 AAA domain GI364_23245 PF13807 G-rich domain on putative tyrosine kinase GI364_23245 PF02706 Chain length determinant protein GI364_23255 PF03816 Cell envelope-related transcriptional attenuator domain GI364_23265 PF03275 UDP-galactopyranose mutase GI364_23270 PF01943 Polysaccharide biosynthesis protein GI364_23280 PF13439 Glycosyltransferase Family 4 GI364_23295 PF03808 Glycosyl transferase WecB/TagA/CpsF family GI364_23300 PF00534 Glycosyl transferases group 1 GI364_23300 PF00862 Sucrose synthase GI364_23305 PF02397 Bacterial sugar transferase GI364_23310 PF01205 Uncharacterized protein family UPF0029 GI364_23310 PF09186 Domain of unknown function (DUF1949) GI364_23315 PF00483 Nucleotidyl transferase GI364_23350 PF00032 Cytochrome b(C-terminal)/b6/petD GI364_23350 PF00033 Cytochrome b/b6/petB GI364_23360 PF07977 FabA-like domain GI364_23370 PF01066 CDP-alcohol phosphatidyltransferase GI364_23375 PF00460 Flagella basal body rod protein GI364_23375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GI364_23380 PF00460 Flagella basal body rod protein GI364_23380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GI364_23390 PF12116 Stage III sporulation protein D GI364_23395 PF01551 Peptidase family M23 GI364_23400 PF08486 Stage II sporulation protein GI364_23405 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GI364_23435 PF00361 Proton-conducting membrane transporter GI364_23440 PF00361 Proton-conducting membrane transporter GI364_23445 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus GI364_23445 PF00361 Proton-conducting membrane transporter GI364_23445 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GI364_23450 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GI364_23455 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 GI364_23465 PF00146 NADH dehydrogenase GI364_23470 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit GI364_23475 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit GI364_23480 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GI364_23485 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 GI364_23490 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain GI364_23490 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain GI364_23495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GI364_23495 PF02874 ATP synthase alpha/beta family, beta-barrel domain GI364_23500 PF00231 ATP synthase GI364_23505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GI364_23505 PF00306 ATP synthase alpha/beta chain, C terminal domain GI364_23505 PF02874 ATP synthase alpha/beta family, beta-barrel domain GI364_23510 PF00213 ATP synthase delta (OSCP) subunit GI364_23515 PF00430 ATP synthase B/B' CF(0) GI364_23520 PF00137 ATP synthase subunit C GI364_23525 PF00119 ATP synthase A chain GI364_23540 PF02803 Thiolase, C-terminal domain GI364_23540 PF00108 Thiolase, N-terminal domain GI364_23545 PF02350 UDP-N-acetylglucosamine 2-epimerase GI364_23555 PF00534 Glycosyl transferases group 1 GI364_23555 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase GI364_23560 PF01522 Polysaccharide deacetylase GI364_23565 PF00909 Ammonium Transporter Family GI364_23595 PF04542 Sigma-70 region 2 GI364_23595 PF08281 Sigma-70, region 4 GI364_23615 PF04463 Protein of unknown function (DUF523) GI364_23620 PF00440 Bacterial regulatory proteins, tetR family GI364_23625 PF07690 Major Facilitator Superfamily GI364_23635 PF13460 NAD(P)H-binding GI364_23635 PF11066 Protein of unknown function (DUF2867) GI364_23640 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GI364_23645 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GI364_23650 PF00464 Serine hydroxymethyltransferase GI364_23655 PF04260 Protein of unknown function (DUF436) GI364_23660 PF02502 Ribose/Galactose Isomerase GI364_23665 PF01451 Low molecular weight phosphotyrosine protein phosphatase GI364_23670 PF02659 Putative manganese efflux pump GI364_23680 PF01300 Telomere recombination GI364_23680 PF03481 Putative GTP-binding controlling metal-binding GI364_23685 PF09551 Stage II sporulation protein R (spore_II_R) GI364_23690 PF00155 Aminotransferase class I and II GI364_23695 PF13847 Methyltransferase domain GI364_23695 PF17827 PrmC N-terminal domain GI364_23700 PF00472 RF-1 domain GI364_23700 PF03462 PCRF domain GI364_23705 PF01197 Ribosomal protein L31 GI364_23710 PF07497 Rho termination factor, RNA-binding domain GI364_23710 PF07498 Rho termination factor, N-terminal domain GI364_23710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GI364_23715 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded GI364_23725 PF00155 Aminotransferase class I and II GI364_23730 PF07687 Peptidase dimerisation domain GI364_23730 PF01546 Peptidase family M20/M25/M40 GI364_23735 PF00132 Bacterial transferase hexapeptide (six repeats) GI364_23735 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal GI364_23735 PF14602 Hexapeptide repeat of succinyl-transferase GI364_23740 PF00923 Transaldolase/Fructose-6-phosphate aldolase GI364_23745 PF05853 beta-keto acid cleavage enzyme GI364_23750 PF03061 Thioesterase superfamily GI364_23755 PF00072 Response regulator receiver domain GI364_23760 PF00117 Glutamine amidotransferase class-I GI364_23760 PF06418 CTP synthase N-terminus GI364_23765 PF05066 HB1, ASXL, restriction endonuclease HTH domain GI364_23775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_23775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_23775 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_23780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GI364_23780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GI364_23780 PF02770 Acyl-CoA dehydrogenase, middle domain GI364_23785 PF00378 Enoyl-CoA hydratase/isomerase GI364_23790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GI364_23790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GI364_23795 PF00108 Thiolase, N-terminal domain GI364_23795 PF02803 Thiolase, C-terminal domain GI364_23800 PF02754 Cysteine-rich domain GI364_23800 PF13183 4Fe-4S dicluster domain GI364_23805 PF17874 MalT-like TPR region GI364_23805 PF00196 Bacterial regulatory proteins, luxR family GI364_23840 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) GI364_23840 PF01348 Type II intron maturase GI364_23855 PF13408 Recombinase zinc beta ribbon domain GI364_23855 PF00239 Resolvase, N terminal domain GI364_23855 PF07508 Recombinase GI364_23915 PF00561 alpha/beta hydrolase fold GI364_23920 PF02525 Flavodoxin-like fold GI364_23925 PF00583 Acetyltransferase (GNAT) family GI364_23930 PF00561 alpha/beta hydrolase fold GI364_23930 PF00364 Biotin-requiring enzyme GI364_23935 PF04405 Domain of Unknown function (DUF542) GI364_23935 PF01814 Hemerythrin HHE cation binding domain GI364_23950 PF03551 Transcriptional regulator PadR-like family GI364_23955 PF00364 Biotin-requiring enzyme GI364_23955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GI364_23955 PF02817 e3 binding domain GI364_23960 PF00676 Dehydrogenase E1 component GI364_23960 PF02779 Transketolase, pyrimidine binding domain GI364_23960 PF16870 2-oxoglutarate dehydrogenase C-terminal GI364_23970 PF00027 Cyclic nucleotide-binding domain GI364_23970 PF13545 Crp-like helix-turn-helix domain GI364_23985 PF13193 AMP-binding enzyme C-terminal domain GI364_23985 PF00501 AMP-binding enzyme GI364_23990 PF12679 ABC-2 family transporter protein GI364_23995 PF00005 ABC transporter GI364_24000 PF00578 AhpC/TSA family GI364_24020 PF00005 ABC transporter GI364_24040 PF01568 Molydopterin dinucleotide binding domain GI364_24040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GI364_24040 PF00384 Molybdopterin oxidoreductase GI364_24050 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase GI364_24050 PF02310 B12 binding domain GI364_24055 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit GI364_24070 PF12544 Lysine-2,3-aminomutase GI364_24100 PF00491 Arginase family GI364_24105 PF17284 Spermidine synthase tetramerisation domain GI364_24110 PF00912 Transglycosylase GI364_24110 PF00905 Penicillin binding protein transpeptidase domain GI364_24115 PF00155 Aminotransferase class I and II GI364_24140 PF09587 Bacterial capsule synthesis protein PGA_cap GI364_24145 PF02875 Mur ligase family, glutamate ligase domain GI364_24145 PF08245 Mur ligase middle domain GI364_24145 PF01225 Mur ligase family, catalytic domain GI364_24150 PF00485 Phosphoribulokinase / Uridine kinase family GI364_24155 PF02073 Thermophilic metalloprotease (M29) GI364_24160 PF03176 MMPL family GI364_24180 PF00474 Sodium:solute symporter family GI364_24185 PF00392 Bacterial regulatory proteins, gntR family GI364_24190 PF00005 ABC transporter GI364_24205 PF00486 Transcriptional regulatory protein, C terminal GI364_24205 PF00072 Response regulator receiver domain GI364_24210 PF00989 PAS fold GI364_24210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_24210 PF00512 His Kinase A (phospho-acceptor) domain GI364_24210 PF00672 HAMP domain GI364_24300 PF01695 IstB-like ATP binding protein GI364_24310 PF00665 Integrase core domain GI364_24315 PF08281 Sigma-70, region 4 GI364_24315 PF04542 Sigma-70 region 2 GI364_24320 PF00491 Arginase family GI364_24330 PF00282 Pyridoxal-dependent decarboxylase conserved domain GI364_24355 PF03176 MMPL family GI364_24360 PF08240 Alcohol dehydrogenase GroES-like domain GI364_24360 PF00107 Zinc-binding dehydrogenase GI364_24365 PF00271 Helicase conserved C-terminal domain GI364_24365 PF00270 DEAD/DEAH box helicase GI364_24370 PF02590 Predicted SPOUT methyltransferase GI364_24375 PF13180 PDZ domain GI364_24380 PF00753 Metallo-beta-lactamase superfamily GI364_24395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GI364_24395 PF00672 HAMP domain GI364_24395 PF00512 His Kinase A (phospho-acceptor) domain GI364_24395 PF13426 PAS domain GI364_24400 PF00486 Transcriptional regulatory protein, C terminal GI364_24400 PF00072 Response regulator receiver domain GI364_24410 PF03796 DnaB-like helicase C terminal domain GI364_24410 PF00772 DnaB-like helicase N terminal domain GI364_24415 PF03948 Ribosomal protein L9, C-terminal domain GI364_24415 PF01281 Ribosomal protein L9, N-terminal domain GI364_24430 PF01084 Ribosomal protein S18 GI364_24435 PF00436 Single-strand binding protein family GI364_24440 PF01250 Ribosomal protein S6 GI364_24445 PF06071 Protein of unknown function (DUF933) GI364_24445 PF01926 50S ribosome-binding GTPase GI364_24455 PF06107 Bacterial protein of unknown function (DUF951) GI364_24465 PF06866 Protein of unknown function (DUF1256) GI364_24475 PF04474 Protein of unknown function (DUF554) GI364_24480 PF17762 HTH domain found in ParB protein GI364_24480 PF02195 ParB-like nuclease domain GI364_24485 PF13614 AAA domain GI364_24490 PF02195 ParB-like nuclease domain GI364_24490 PF17762 HTH domain found in ParB protein GI364_24495 PF02527 rRNA small subunit methyltransferase G GI364_24500 PF13932 GidA associated domain GI364_24500 PF01134 Glucose inhibited division protein A GI364_24505 PF12631 MnmE helical domain GI364_24505 PF01926 50S ribosome-binding GTPase GI364_24505 PF10396 GTP-binding protein TrmE N-terminus GI364_24510 PF01424 R3H domain GI364_24510 PF14804 Jag N-terminus GI364_24515 PF02096 60Kd inner membrane protein GI364_24520 PF01809 Putative membrane protein insertion efficiency factor GI364_24525 PF00825 Ribonuclease P GI364_24530 PF00468 Ribosomal protein L34 GI364_24535 PF13614 AAA domain GI364_24560 PF01695 IstB-like ATP binding protein GI364_24580 PF13700 Domain of unknown function (DUF4158) GI364_24580 PF01526 Tn3 transposase DDE domain GI364_24585 PF00589 Phage integrase family GI364_24590 PF02694 Uncharacterised BCR, YnfA/UPF0060 family GI364_24605 PF01022 Bacterial regulatory protein, arsR family GI364_24610 PF01022 Bacterial regulatory protein, arsR family GI364_24615 PF01545 Cation efflux family GI364_24620 PF13700 Domain of unknown function (DUF4158) GI364_24620 PF01526 Tn3 transposase DDE domain GI364_24660 PF02374 Anion-transporting ATPase GI364_24665 PF02374 Anion-transporting ATPase GI364_24680 PF01022 Bacterial regulatory protein, arsR family GI364_24685 PF02040 Arsenical pump membrane protein GI364_24690 PF01451 Low molecular weight phosphotyrosine protein phosphatase GI364_24695 PF01451 Low molecular weight phosphotyrosine protein phosphatase GI364_24700 PF07992 Pyridine nucleotide-disulphide oxidoreductase GI364_24800 PF00589 Phage integrase family GI364_24800 PF02899 Phage integrase, N-terminal SAM-like domain GI364_24890 PF01695 IstB-like ATP binding protein GI364_24895 PF00665 Integrase core domain GI364_24905 PF09669 Phage regulatory protein Rha (Phage_pRha) GI364_24905 PF03374 Phage antirepressor protein KilAC domain GI364_24950 PF00589 Phage integrase family GI364_24950 PF02899 Phage integrase, N-terminal SAM-like domain GI364_24955 PF01554 MatE GI364_24980 PF03323 Bacillus/Clostridium GerA spore germination protein GI364_24985 PF05504 Spore germination B3/ GerAC like, C-terminal GI364_25000 PF02899 Phage integrase, N-terminal SAM-like domain GI364_25000 PF00589 Phage integrase family GI364_25025 PF13520 Amino acid permease GI364_25035 PF01526 Tn3 transposase DDE domain GI364_25035 PF13700 Domain of unknown function (DUF4158)