locus-tag	class	description
K3J57_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
K3J57_00035	COG0300	oxidoreductase activity
K3J57_00065	COG1802	Transcriptional regulator
K3J57_00075	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
K3J57_00085	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
K3J57_00090	COG1082	Xylose isomerase domain protein TIM barrel
K3J57_00090	COG3185	4-Hydroxyphenylpyruvate dioxygenase
K3J57_00095	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
K3J57_00100	COG0372	Belongs to the citrate synthase family
K3J57_00105	COG0673	inositol 2-dehydrogenase activity
K3J57_00115	COG0673	inositol 2-dehydrogenase activity
K3J57_00125	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_00130	COG0028	Belongs to the TPP enzyme family
K3J57_00150	COG3909	cytochrome
K3J57_00155	COG1529	Aldehyde oxidase and xanthine dehydrogenase
K3J57_00155	COG2010	Cytochrome c
K3J57_00160	COG2132	Multicopper oxidase
K3J57_00185	COG0010	Belongs to the arginase family
K3J57_00190	COG1166	arginine decarboxylase activity
K3J57_00205	COG0010	Belongs to the arginase family
K3J57_00210	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
K3J57_00235	COG0351	phosphomethylpyrimidine kinase
K3J57_00245	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
K3J57_00260	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
K3J57_00265	COG3938	Belongs to the proline racemase family
K3J57_00270	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
K3J57_00275	COG3938	Belongs to the proline racemase family
K3J57_00280	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
K3J57_00285	COG1802	Transcriptional regulator
K3J57_00295	COG0028	Belongs to the TPP enzyme family
K3J57_00300	COG1349	DNA-binding transcription factor activity
K3J57_00315	COG1840	ABC-type Fe3 transport system, periplasmic component
K3J57_00320	COG3842	ATPase activity
K3J57_00335	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
K3J57_00345	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_00360	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
K3J57_00375	COG1283	sodium-dependent phosphate transmembrane transporter activity
K3J57_00395	COG0745	RESPONSE REGULATOR receiver
K3J57_00400	COG2205	protein histidine kinase activity
K3J57_00410	COG1120	ATPase activity
K3J57_00420	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
K3J57_00440	COG1132	(ABC) transporter
K3J57_00445	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
K3J57_00450	COG1804	L-carnitine dehydratase bile acid-inducible protein F
K3J57_00455	COG1960	acyl-CoA dehydrogenase activity
K3J57_00460	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
K3J57_00480	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
K3J57_00485	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
K3J57_00490	COG1335	isochorismatase
K3J57_00500	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
K3J57_00510	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
K3J57_00520	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
K3J57_00540	COG0514	ATP-dependent DNA helicase (RecQ)
K3J57_00545	COG3022	response to hydroperoxide
K3J57_00570	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_00570	COG3321	synthase
K3J57_00570	COG0604	alcohol dehydrogenase
K3J57_00580	COG0828	Belongs to the bacterial ribosomal protein bS21 family
K3J57_00585	COG2814	Major facilitator Superfamily
K3J57_00595	COG2267	carboxylic ester hydrolase activity
K3J57_00605	COG2423	ornithine cyclodeaminase activity
K3J57_00630	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
K3J57_00710	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
K3J57_00720	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
K3J57_00720	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
K3J57_00725	COG0697	spore germination
K3J57_00730	COG0741	lytic transglycosylase activity
K3J57_00735	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
K3J57_00745	COG1720	tRNA m6t6A37 methyltransferase activity
K3J57_00750	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
K3J57_00755	COG0303	'Molybdopterin
K3J57_00760	COG0746	molybdenum cofactor guanylyltransferase activity
K3J57_00765	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
K3J57_00780	COG0583	DNA-binding transcription factor activity
K3J57_00820	COG1960	acyl-CoA dehydrogenase activity
K3J57_00825	COG0009	L-threonylcarbamoyladenylate synthase
K3J57_00830	COG1678	Uncharacterized ACR, COG1678
K3J57_00865	COG3119	arylsulfatase activity
K3J57_00915	COG0494	nUDIX hydrolase
K3J57_00920	COG3034	peptidoglycan biosynthetic process
K3J57_00925	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
K3J57_00940	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
K3J57_00955	COG0328	RNA-DNA hybrid ribonuclease activity
K3J57_00965	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
K3J57_00975	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
K3J57_00980	COG1758	RNA polymerase activity
K3J57_00985	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
K3J57_00995	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
K3J57_01000	COG1280	lysine exporter protein (LysE YggA)
K3J57_01005	COG0736	holo-[acyl-carrier-protein] synthase activity
K3J57_01010	COG0681	Belongs to the peptidase S26 family
K3J57_01015	COG0571	ribonuclease III activity
K3J57_01020	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
K3J57_01030	COG1381	Involved in DNA repair and RecF pathway recombination
K3J57_01070	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
K3J57_01075	COG0745	RESPONSE REGULATOR receiver
K3J57_01080	COG2205	protein histidine kinase activity
K3J57_01090	COG1660	Displays ATPase and GTPase activities
K3J57_01100	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
K3J57_01110	COG0840	transmembrane signaling receptor activity
K3J57_01145	COG0300	oxidoreductase activity
K3J57_01155	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
K3J57_01165	COG0501	Belongs to the peptidase M48B family
K3J57_01170	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
K3J57_01185	COG0250	Participates in transcription elongation, termination and antitermination
K3J57_01190	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
K3J57_01195	COG0081	regulation of translation
K3J57_01200	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
K3J57_01205	COG0222	ribosome binding
K3J57_01210	COG0085	RNA polymerase activity
K3J57_01215	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
K3J57_01225	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
K3J57_01230	COG0049	tRNA binding
K3J57_01235	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
K3J57_01240	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
K3J57_01255	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
K3J57_01260	COG0088	Forms part of the polypeptide exit tunnel
K3J57_01265	COG0089	rRNA binding
K3J57_01280	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
K3J57_01285	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
K3J57_01290	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
K3J57_01295	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
K3J57_01300	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
K3J57_01320	COG0255	Belongs to the universal ribosomal protein uL29 family
K3J57_01325	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
K3J57_01330	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
K3J57_01335	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
K3J57_01340	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
K3J57_01345	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
K3J57_01350	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
K3J57_01355	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
K3J57_01360	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
K3J57_01365	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
K3J57_01370	COG1841	ribosomal large subunit assembly
K3J57_01385	COG0200	Binds to the 23S rRNA
K3J57_01390	COG0201	protein transport
K3J57_01395	COG0563	adenylate kinase activity
K3J57_01400	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
K3J57_01405	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
K3J57_01410	COG0202	RNA polymerase activity
K3J57_01415	COG0203	ribosomal protein L17
K3J57_01425	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
K3J57_01440	COG0564	pseudouridine synthase activity
K3J57_01445	COG0546	phosphoglycolate phosphatase activity
K3J57_01455	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
K3J57_01460	COG4597	amino acid ABC transporter
K3J57_01465	COG0765	amino acid transport
K3J57_01470	COG1126	abc transporter atp-binding protein
K3J57_01495	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
K3J57_01500	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_01505	COG0218	Necessary for normal cell division and for the maintenance of normal septation
K3J57_01515	COG0706	membrane insertase activity
K3J57_01520	COG5001	Diguanylate cyclase
K3J57_01525	COG0037	tRNA processing
K3J57_01540	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
K3J57_01545	COG0594	ribonuclease P activity
K3J57_01550	COG0230	Belongs to the bacterial ribosomal protein bL34 family
K3J57_01555	COG3734	2-keto-3-deoxy-galactonokinase
K3J57_01580	COG1385	rRNA (uridine-N3-)-methyltransferase activity
K3J57_01585	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
K3J57_01590	COG3047	cAMP biosynthetic process
K3J57_01590	COG2885	chlorophyll binding
K3J57_01610	COG1739	Uncharacterized protein family UPF0029
K3J57_01625	COG1435	thymidine kinase activity
K3J57_01635	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
K3J57_01655	COG1136	(ABC) transporter
K3J57_01660	COG0438	transferase activity, transferring glycosyl groups
K3J57_01675	COG0187	DNA topoisomerase II activity
K3J57_01680	COG4335	DNA alkylation repair
K3J57_01685	COG0101	tRNA pseudouridine synthase activity
K3J57_01690	COG3106	COG3106 Predicted ATPase
K3J57_01700	COG3768	UPF0283 membrane protein
K3J57_01725	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
K3J57_01735	COG1131	(ABC) transporter
K3J57_01740	COG0842	Transport permease protein
K3J57_01745	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
K3J57_01745	COG0616	signal peptide processing
K3J57_01765	COG0322	excinuclease ABC activity
K3J57_01770	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
K3J57_01780	COG0314	molybdopterin synthase activity
K3J57_01790	COG1183	phosphatidylcholine synthase activity
K3J57_01805	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
K3J57_01815	COG2391	methyltransferase activity
K3J57_01825	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
K3J57_01830	COG2264	protein methyltransferase activity
K3J57_01855	COG2814	Major facilitator Superfamily
K3J57_01865	COG1045	serine acetyltransferase
K3J57_01870	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
K3J57_01880	COG1570	exodeoxyribonuclease VII activity
K3J57_01890	COG0590	tRNA wobble adenosine to inosine editing
K3J57_01910	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
K3J57_01915	COG0154	amidase activity
K3J57_01925	COG3023	N-Acetylmuramoyl-L-alanine amidase
K3J57_01935	COG0267	Belongs to the bacterial ribosomal protein bL33 family
K3J57_01950	COG0670	Belongs to the BI1 family
K3J57_01960	COG0583	DNA-binding transcription factor activity
K3J57_01965	COG0604	alcohol dehydrogenase
K3J57_01965	COG3321	synthase
K3J57_01965	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_01975	COG0483	inositol monophosphate 1-phosphatase activity
K3J57_01985	COG0402	S-adenosylhomocysteine deaminase activity
K3J57_01990	COG2239	Acts as a magnesium transporter
K3J57_01995	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
K3J57_02000	COG0471	metal ion transport
K3J57_02000	COG3273	potassium ion transport
K3J57_02005	COG1280	lysine exporter protein (LysE YggA)
K3J57_02025	COG0217	transcriptional regulatory protein
K3J57_02030	COG0778	Nitroreductase
K3J57_02045	COG0747	negative chemotaxis
K3J57_02050	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
K3J57_02055	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
K3J57_02060	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
K3J57_02100	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_02115	COG0601	transmembrane transport
K3J57_02120	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
K3J57_02130	COG4608	Belongs to the ABC transporter superfamily
K3J57_02140	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
K3J57_02140	COG0045	succinate-CoA ligase (ADP-forming) activity
K3J57_02140	COG1042	CoA-binding domain protein
K3J57_02145	COG0123	including yeast histone deacetylase and acetoin utilization protein
K3J57_02160	COG0667	Aldo Keto reductase
K3J57_02170	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
K3J57_02180	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
K3J57_02185	COG1079	Belongs to the binding-protein-dependent transport system permease family
K3J57_02190	COG4603	Belongs to the binding-protein-dependent transport system permease family
K3J57_02195	COG3845	ABC transporter
K3J57_02205	COG1529	Aldehyde oxidase and xanthine dehydrogenase
K3J57_02225	COG2900	Belongs to the SlyX family
K3J57_02230	COG0124	histidyl-tRNA synthetase
K3J57_02235	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
K3J57_02240	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
K3J57_02245	COG0180	Tryptophanyl-tRNA synthetase
K3J57_02260	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
K3J57_02270	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
K3J57_02275	COG0792	nuclease activity
K3J57_02280	COG0189	ligase activity
K3J57_02290	COG0606	chelatase, subunit chli
K3J57_02315	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
K3J57_02320	COG0756	dUTP diphosphatase activity
K3J57_02325	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
K3J57_02340	COG0765	amino acid transport
K3J57_02345	COG0339	signal peptide processing
K3J57_02350	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
K3J57_02415	COG3118	belongs to the thioredoxin family
K3J57_02420	COG0509	glycine decarboxylation via glycine cleavage system
K3J57_02430	COG0534	Mate efflux family protein
K3J57_02440	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
K3J57_02470	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
K3J57_02490	COG0768	penicillin binding
K3J57_02495	COG0772	Belongs to the SEDS family
K3J57_02535	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
K3J57_02555	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
K3J57_02560	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
K3J57_02565	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
K3J57_02570	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
K3J57_02575	COG0355	proton-transporting ATP synthase activity, rotational mechanism
K3J57_02605	COG0596	Alpha beta hydrolase
K3J57_02605	COG0508	dehydrogenase complex catalyzes the overall conversion of
K3J57_02615	COG2983	Belongs to the UPF0260 family
K3J57_02625	COG0196	riboflavin kinase activity
K3J57_02630	COG2030	dehydratase
K3J57_02645	COG1227	inorganic diphosphatase activity
K3J57_02655	COG1858	cytochrome C peroxidase
K3J57_02665	COG0459	protein refolding
K3J57_02680	COG0635	Involved in the biosynthesis of porphyrin-containing compound
K3J57_02685	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
K3J57_02710	COG2010	Cytochrome c
K3J57_02715	COG0348	domain, Protein
K3J57_02735	COG2197	response regulator
K3J57_02745	COG4181	ATPase activity
K3J57_02750	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
K3J57_02785	COG2030	dehydratase
K3J57_02795	COG2301	Belongs to the HpcH HpaI aldolase family
K3J57_02810	COG0039	L-malate dehydrogenase activity
K3J57_02820	COG0045	succinate-CoA ligase (ADP-forming) activity
K3J57_02830	COG0567	Dehydrogenase, E1 component
K3J57_02835	COG0508	dehydrogenase complex catalyzes the overall conversion of
K3J57_02875	COG0642	Histidine kinase
K3J57_02905	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
K3J57_02925	COG0356	it plays a direct role in the translocation of protons across the membrane
K3J57_02930	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
K3J57_02935	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
K3J57_02940	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
K3J57_02950	COG2186	Transcriptional regulator
K3J57_02955	COG2885	chlorophyll binding
K3J57_02965	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
K3J57_02970	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
K3J57_02975	COG1765	OsmC-like protein
K3J57_03000	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
K3J57_03000	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
K3J57_03020	COG3622	Belongs to the hyi family
K3J57_03030	COG0714	Associated with various cellular activities
K3J57_03050	COG0277	FAD linked oxidase domain protein
K3J57_03055	COG0277	FAD linked oxidase domain protein
K3J57_03060	COG0247	lactate metabolic process
K3J57_03070	COG0071	Belongs to the small heat shock protein (HSP20) family
K3J57_03080	COG3191	aminopeptidase activity
K3J57_03100	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_03110	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
K3J57_03120	COG0489	protein tyrosine kinase activity
K3J57_03120	COG2151	metal-sulfur cluster biosynthetic enzyme
K3J57_03125	COG4067	protein conserved in archaea
K3J57_03125	COG0189	ligase activity
K3J57_03130	COG0254	rRNA binding
K3J57_03135	COG0335	large ribosomal subunit rRNA binding
K3J57_03140	COG0336	Belongs to the RNA methyltransferase TrmD family
K3J57_03150	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
K3J57_03155	COG0778	Nitroreductase
K3J57_03160	COG0228	four-way junction DNA binding
K3J57_03180	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
K3J57_03200	COG1054	Belongs to the UPF0176 family
K3J57_03210	COG1434	Gram-negative-bacterium-type cell wall biogenesis
K3J57_03240	COG1309	transcriptional regulator
K3J57_03245	COG3119	arylsulfatase activity
K3J57_03250	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_03265	COG1396	sequence-specific DNA binding
K3J57_03265	COG3800	Transcriptional regulator
K3J57_03270	COG2814	Major facilitator Superfamily
K3J57_03275	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
K3J57_03300	COG4770	biotin carboxylase activity
K3J57_03310	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
K3J57_03310	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
K3J57_03320	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
K3J57_03325	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
K3J57_03345	COG0248	Ppx GppA phosphatase
K3J57_03350	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
K3J57_03360	COG0628	permease
K3J57_03375	COG0442	prolyl-tRNA aminoacylation
K3J57_03385	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
K3J57_03390	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
K3J57_03410	COG0529	Catalyzes the synthesis of activated sulfate
K3J57_03410	COG2046	Belongs to the sulfate adenylyltransferase family
K3J57_03420	COG0492	ferredoxin-NADP+ reductase activity
K3J57_03425	COG1522	sequence-specific DNA binding
K3J57_03435	COG1496	oxidoreductase activity
K3J57_03445	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
K3J57_03460	COG1573	uracil-dna glycosylase
K3J57_03475	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
K3J57_03490	COG2877	3-deoxy-8-phosphooctulonate synthase activity
K3J57_03500	COG0463	Glycosyl transferase, family 2
K3J57_03545	COG0174	glutamine synthetase
K3J57_03570	COG0022	dehydrogenase e1 component
K3J57_03575	COG0583	DNA-binding transcription factor activity
K3J57_03585	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
K3J57_03590	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_03595	COG0583	DNA-binding transcription factor activity
K3J57_03605	COG0556	nucleotide-excision repair
K3J57_03625	COG3739	integral membrane protein
K3J57_03635	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
K3J57_03650	COG2204	response regulator
K3J57_03660	COG0281	malic enzyme
K3J57_03660	COG0280	phosphate acetyltransferase
K3J57_03670	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
K3J57_03675	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
K3J57_03680	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
K3J57_03695	COG0318	PFAM AMP-dependent synthetase and ligase
K3J57_03700	COG0697	spore germination
K3J57_03710	COG1250	3-hydroxyacyl-CoA dehydrogenase
K3J57_03710	COG1024	Enoyl-CoA hydratase
K3J57_03715	COG0183	Belongs to the thiolase family
K3J57_03720	COG0625	glutathione transferase activity
K3J57_03730	COG1960	acyl-CoA dehydrogenase activity
K3J57_03765	COG0534	Mate efflux family protein
K3J57_03770	COG1393	Belongs to the ArsC family
K3J57_03785	COG3257	ureidoglycine aminohydrolase activity
K3J57_03795	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
K3J57_03805	COG0737	Belongs to the 5'-nucleotidase family
K3J57_03815	COG2135	peptidase activity
K3J57_03820	COG0154	amidase activity
K3J57_03825	COG0318	PFAM AMP-dependent synthetase and ligase
K3J57_03830	COG0174	glutamine synthetase
K3J57_03835	COG1177	transmembrane transport
K3J57_03840	COG1176	ABC-type spermidine putrescine transport system, permease component I
K3J57_03845	COG3842	ATPase activity
K3J57_03875	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
K3J57_03880	COG0602	queuosine metabolic process
K3J57_03885	COG0720	synthase
K3J57_03890	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
K3J57_03900	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
K3J57_03915	COG1492	cobalamin metabolic process
K3J57_03925	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
K3J57_03935	COG0354	folic acid binding
K3J57_03940	COG1132	(ABC) transporter
K3J57_03955	COG0525	valine-tRNA ligase activity
K3J57_03960	COG0033	Phosphoglucomutase
K3J57_03970	COG0019	diaminopimelate decarboxylase activity
K3J57_03990	COG0583	DNA-binding transcription factor activity
K3J57_03995	COG0483	inositol monophosphate 1-phosphatase activity
K3J57_04020	COG1136	(ABC) transporter
K3J57_04040	COG3842	ATPase activity
K3J57_04050	COG1176	ABC-type spermidine putrescine transport system, permease component I
K3J57_04055	COG1177	transmembrane transport
K3J57_04060	COG0740	serine-type endopeptidase activity
K3J57_04065	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
K3J57_04085	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
K3J57_04090	COG0439	Biotin carboxylase
K3J57_04105	COG1309	transcriptional regulator
K3J57_04130	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
K3J57_04135	COG0410	ABC transporter
K3J57_04160	COG3800	Transcriptional regulator
K3J57_04160	COG1396	sequence-specific DNA binding
K3J57_04165	COG0745	RESPONSE REGULATOR receiver
K3J57_04175	COG2205	protein histidine kinase activity
K3J57_04185	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
K3J57_04200	COG3750	Belongs to the UPF0335 family
K3J57_04205	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
K3J57_04210	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
K3J57_04255	COG0840	transmembrane signaling receptor activity
K3J57_04275	COG0028	Belongs to the TPP enzyme family
K3J57_04280	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
K3J57_04290	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
K3J57_04295	COG0518	GMP synthase (glutamine-hydrolyzing) activity
K3J57_04295	COG0519	Catalyzes the synthesis of GMP from XMP
K3J57_04325	COG0488	(ABC) transporter
K3J57_04335	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
K3J57_04345	COG0625	glutathione transferase activity
K3J57_04355	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
K3J57_04365	COG2326	polyphosphate kinase activity
K3J57_04370	COG2951	lytic endotransglycosylase activity
K3J57_04375	COG0534	Mate efflux family protein
K3J57_04425	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
K3J57_04435	COG1278	Cold shock
K3J57_04440	COG1393	Belongs to the ArsC family
K3J57_04460	COG3220	belongs to the UPF0276 family
K3J57_04470	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
K3J57_04480	COG2267	carboxylic ester hydrolase activity
K3J57_04505	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
K3J57_04510	COG0303	'Molybdopterin
K3J57_04520	COG0315	cyclic pyranopterin monophosphate synthase activity
K3J57_04530	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
K3J57_04535	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
K3J57_04560	COG0148	phosphopyruvate hydratase activity
K3J57_04575	COG0384	phenazine biosynthesis protein PhzF
K3J57_04595	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
K3J57_04600	COG0456	acetyltransferase
K3J57_04605	COG1957	nucleoside hydrolase
K3J57_04615	COG2081	HI0933 family
K3J57_04620	COG0316	Belongs to the HesB IscA family
K3J57_04625	COG0232	Belongs to the dGTPase family. Type 2 subfamily
K3J57_04630	COG0018	arginyl-trna synthetase
K3J57_04640	COG1472	Belongs to the glycosyl hydrolase 3 family
K3J57_04645	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
K3J57_04650	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
K3J57_04660	COG0717	Belongs to the dCTP deaminase family
K3J57_04675	COG0776	regulation of translation
K3J57_04680	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
K3J57_04685	COG0416	fatty acid biosynthetic process
K3J57_04690	COG0333	Belongs to the bacterial ribosomal protein bL32 family
K3J57_04705	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
K3J57_04715	COG0488	(ABC) transporter
K3J57_04725	COG1272	protein, Hemolysin III
K3J57_04730	COG0076	glutamate decarboxylase activity
K3J57_04735	COG0149	triose-phosphate isomerase activity
K3J57_04740	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
K3J57_04745	COG0316	Belongs to the HesB IscA family
K3J57_04760	COG2151	metal-sulfur cluster biosynthetic enzyme
K3J57_04765	COG0343	queuine tRNA-ribosyltransferase activity
K3J57_04775	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
K3J57_04800	COG0406	alpha-ribazole phosphatase activity
K3J57_04825	COG0156	8-amino-7-oxononanoate synthase activity
K3J57_04835	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
K3J57_04845	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
K3J57_04855	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
K3J57_04865	COG0446	pyridine nucleotide-disulphide oxidoreductase
K3J57_04865	COG0404	The glycine cleavage system catalyzes the degradation of glycine
K3J57_04910	COG2962	Rard protein
K3J57_04925	COG5265	(ABC) transporter
K3J57_04930	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
K3J57_04950	COG1160	GTP binding
K3J57_04970	COG4221	oxidoreductase activity
K3J57_04980	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
K3J57_05005	COG1127	ABC transporter
K3J57_05010	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
K3J57_05015	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
K3J57_05040	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
K3J57_05060	COG0544	peptidyl-prolyl cis-trans isomerase activity
K3J57_05070	COG0359	binds to the 23S rRNA
K3J57_05075	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
K3J57_05080	COG0360	Binds together with S18 to 16S ribosomal RNA
K3J57_05090	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
K3J57_05100	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
K3J57_05105	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
K3J57_05110	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
K3J57_05125	COG4695	Portal protein
K3J57_05215	COG0508	dehydrogenase complex catalyzes the overall conversion of
K3J57_05220	COG0508	dehydrogenase complex catalyzes the overall conversion of
K3J57_05220	COG0022	dehydrogenase e1 component
K3J57_05225	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
K3J57_05230	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
K3J57_05235	COG3588	fructose-bisphosphate aldolase
K3J57_05265	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
K3J57_05275	COG0436	Aminotransferase
K3J57_05280	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
K3J57_05285	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
K3J57_05295	COG0006	proline dipeptidase activity
K3J57_05300	COG1473	amidohydrolase
K3J57_05335	COG0826	peptidase U32
K3J57_05340	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
K3J57_05345	COG0308	aminopeptidase N
K3J57_05360	COG2155	Conserved Protein
K3J57_05365	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
K3J57_05390	COG2010	Cytochrome c
K3J57_05390	COG1529	Aldehyde oxidase and xanthine dehydrogenase
K3J57_05405	COG0436	Aminotransferase
K3J57_05420	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
K3J57_05440	COG1741	Belongs to the pirin family
K3J57_05455	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
K3J57_05470	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
K3J57_05475	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
K3J57_05490	COG0812	UDP-N-acetylmuramate dehydrogenase activity
K3J57_05495	COG1181	Belongs to the D-alanine--D-alanine ligase family
K3J57_05500	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
K3J57_05505	COG0849	cell division
K3J57_05510	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
K3J57_05515	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
K3J57_05520	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
K3J57_05530	COG0277	FAD linked oxidase domain protein
K3J57_05535	COG0038	chloride channel
K3J57_05540	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
K3J57_05545	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
K3J57_05555	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
K3J57_05570	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
K3J57_05585	COG2095	MarC family integral membrane protein
K3J57_05590	COG0488	(ABC) transporter
K3J57_05595	COG0105	UTP biosynthetic process
K3J57_05625	COG2205	protein histidine kinase activity
K3J57_05625	COG0784	Response regulator, receiver
K3J57_05625	COG2198	Histidine kinase
K3J57_05645	COG0730	response to heat
K3J57_05695	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
K3J57_05710	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
K3J57_05720	COG1522	sequence-specific DNA binding
K3J57_05750	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
K3J57_05755	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
K3J57_05770	COG0433	COG0433 Predicted ATPase
K3J57_05780	COG4536	flavin adenine dinucleotide binding
K3J57_05790	COG0004	ammonium transporteR
K3J57_05920	COG0456	acetyltransferase
K3J57_05930	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
K3J57_05935	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
K3J57_05940	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
K3J57_05950	COG2166	iron-sulfur cluster assembly
K3J57_05965	COG5012	cobalamin binding
K3J57_05975	COG0646	methionine synthase
K3J57_05975	COG1410	methionine synthase
K3J57_05990	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
K3J57_05995	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
K3J57_06000	COG0047	phosphoribosylformylglycinamidine synthase activity
K3J57_06010	COG2204	response regulator
K3J57_06015	COG0457	Tetratricopeptide repeat
K3J57_06020	COG0261	This protein binds to 23S rRNA in the presence of protein L20
K3J57_06020	COG3743	rRNA binding
K3J57_06025	COG0211	Belongs to the bacterial ribosomal protein bL27 family
K3J57_06045	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
K3J57_06050	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
K3J57_06055	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
K3J57_06095	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
K3J57_06105	COG2321	neutral zinc metallopeptidase
K3J57_06130	COG0626	cystathionine gamma-synthase activity
K3J57_06190	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
K3J57_06200	COG1561	YicC-like family, N-terminal region
K3J57_06205	COG0194	GDP metabolic process
K3J57_06220	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
K3J57_06230	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
K3J57_06235	COG2867	negative regulation of translational initiation
K3J57_06240	COG4974	Belongs to the 'phage' integrase family
K3J57_06255	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
K3J57_06260	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
K3J57_06265	COG1058	Belongs to the CinA family
K3J57_06265	COG1546	Belongs to the CinA family
K3J57_06275	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
K3J57_06275	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
K3J57_06280	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
K3J57_06285	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
K3J57_06290	COG3852	Histidine kinase
K3J57_06295	COG2204	response regulator
K3J57_06300	COG5000	phosphorelay sensor kinase activity
K3J57_06305	COG2204	response regulator
K3J57_06310	COG0569	domain protein
K3J57_06315	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
K3J57_06325	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
K3J57_06335	COG2084	Dehydrogenase
K3J57_06355	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
K3J57_06360	COG2814	Major facilitator Superfamily
K3J57_06370	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
K3J57_06385	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_06400	COG2313	pseudouridylate synthase activity
K3J57_06405	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
K3J57_06405	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
K3J57_06410	COG0052	Belongs to the universal ribosomal protein uS2 family
K3J57_06415	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
K3J57_06425	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
K3J57_06430	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
K3J57_06435	COG4311	Sarcosine oxidase, delta subunit
K3J57_06440	COG0446	pyridine nucleotide-disulphide oxidoreductase
K3J57_06440	COG0404	The glycine cleavage system catalyzes the degradation of glycine
K3J57_06450	COG4977	sequence-specific DNA binding
K3J57_06460	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_06480	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
K3J57_06485	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
K3J57_06495	COG0824	Thioesterase
K3J57_06495	COG1250	3-hydroxyacyl-CoA dehydrogenase
K3J57_06500	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_06505	COG3246	L-lysine catabolic process to acetate
K3J57_06510	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
K3J57_06520	COG0251	oxidation-reduction process
K3J57_06525	COG3831	ATPase activity
K3J57_06530	COG0714	Associated with various cellular activities
K3J57_06535	COG2425	protein containing a von Willebrand factor type A (vWA) domain
K3J57_06540	COG3552	Protein containing von Willebrand factor type A (VWA) domain
K3J57_06550	COG0745	RESPONSE REGULATOR receiver
K3J57_06560	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
K3J57_06570	COG0573	inorganic phosphate transmembrane transporter activity
K3J57_06585	COG5002	protein histidine kinase activity
K3J57_06605	COG5598	trimethylamine methyltransferase
K3J57_06610	COG0519	Catalyzes the synthesis of GMP from XMP
K3J57_06610	COG0518	GMP synthase (glutamine-hydrolyzing) activity
K3J57_06635	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
K3J57_06640	COG2326	polyphosphate kinase activity
K3J57_06645	COG1309	transcriptional regulator
K3J57_06650	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
K3J57_06665	COG0719	Fe-S assembly protein
K3J57_06670	COG0396	ATPase activity
K3J57_06690	COG0719	Fe-S assembly protein
K3J57_06695	COG1104	cysteine desulfurase activity
K3J57_06705	COG1959	2 iron, 2 sulfur cluster binding
K3J57_06710	COG2945	thiolester hydrolase activity
K3J57_06730	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
K3J57_06735	COG1612	heme a metabolic process
K3J57_06740	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
K3J57_06750	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
K3J57_06755	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
K3J57_06760	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
K3J57_06770	COG0840	transmembrane signaling receptor activity
K3J57_06775	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
K3J57_06780	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
K3J57_06785	COG0745	RESPONSE REGULATOR receiver
K3J57_06795	COG0482	sulfurtransferase activity
K3J57_06805	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
K3J57_06815	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
K3J57_06820	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
K3J57_06830	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
K3J57_06840	COG0750	zinc metalloprotease
K3J57_06845	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
K3J57_06855	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
K3J57_06860	COG0233	cytoplasmic translational termination
K3J57_06865	COG0528	UMP kinase activity
K3J57_06875	COG2207	Transcriptional regulator
K3J57_06880	COG0741	lytic transglycosylase activity
K3J57_06885	COG0629	single-stranded DNA binding
K3J57_06900	COG1686	Belongs to the peptidase S11 family
K3J57_06905	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
K3J57_06915	COG0084	hydrolase, TatD family'
K3J57_06940	COG3396	Phenylacetate-CoA oxygenase
K3J57_06945	COG3460	Phenylacetate-CoA oxygenase
K3J57_06950	COG3396	Phenylacetate-CoA oxygenase
K3J57_06955	COG2151	metal-sulfur cluster biosynthetic enzyme
K3J57_06960	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
K3J57_06970	COG2030	dehydratase
K3J57_06970	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_06995	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
K3J57_07010	COG1024	Enoyl-CoA hydratase
K3J57_07015	COG0121	glutamine amidotransferase
K3J57_07020	COG2076	Multidrug Resistance protein
K3J57_07025	COG1217	gtp-binding protein TYPA
K3J57_07040	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
K3J57_07045	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
K3J57_07055	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
K3J57_07055	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
K3J57_07060	COG0517	IMP dehydrogenase activity
K3J57_07060	COG0516	GMP reductase activity
K3J57_07085	COG0542	response to heat
K3J57_07105	COG2814	Major facilitator Superfamily
K3J57_07130	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
K3J57_07140	COG0129	dihydroxy-acid dehydratase activity
K3J57_07145	COG0800	Aldolase
K3J57_07155	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
K3J57_07160	COG0215	cysteine-tRNA ligase activity
K3J57_07245	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
K3J57_07250	COG0737	Belongs to the 5'-nucleotidase family
K3J57_07255	COG3258	Cytochrome c
K3J57_07275	COG0785	Cytochrome C biogenesis protein
K3J57_07290	COG2391	methyltransferase activity
K3J57_07315	COG2873	o-acetylhomoserine
K3J57_07320	COG2968	Membrane
K3J57_07330	COG1522	sequence-specific DNA binding
K3J57_07335	COG0840	transmembrane signaling receptor activity
K3J57_07340	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
K3J57_07345	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
K3J57_07350	COG1329	Transcriptional regulator
K3J57_07355	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
K3J57_07360	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
K3J57_07395	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
K3J57_07425	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
K3J57_07435	COG1797	cobyrinic acid a,c-diamide synthase activity
K3J57_07440	COG2814	Major facilitator Superfamily
K3J57_07450	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
K3J57_07470	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
K3J57_07475	COG0028	Belongs to the TPP enzyme family
K3J57_07480	COG0440	acetolactate synthase activity
K3J57_07490	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
K3J57_07510	COG0259	pyridoxamine-phosphate oxidase activity
K3J57_07515	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
K3J57_07520	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
K3J57_07530	COG2890	protein-(glutamine-N5) methyltransferase activity
K3J57_07535	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
K3J57_07545	COG0010	Belongs to the arginase family
K3J57_07550	COG1473	amidohydrolase
K3J57_07555	COG3956	TIGRFAM MazG family protein
K3J57_07560	COG1840	ABC-type Fe3 transport system, periplasmic component
K3J57_07565	COG0494	nUDIX hydrolase
K3J57_07570	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
K3J57_07580	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
K3J57_07595	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
K3J57_07605	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
K3J57_07610	COG2833	Protein of unknown function (DUF455)
K3J57_07615	COG0739	heme binding
K3J57_07630	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
K3J57_07635	COG3842	ATPase activity
K3J57_07640	COG0395	ABC-type sugar transport system, permease component
K3J57_07645	COG1175	transmembrane transport
K3J57_07650	COG1653	transport
K3J57_07660	COG0745	RESPONSE REGULATOR receiver
K3J57_07670	COG0835	chemotaxis
K3J57_07675	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
K3J57_07680	COG0745	RESPONSE REGULATOR receiver
K3J57_07695	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
K3J57_07700	COG2201	protein-glutamate methylesterase activity
K3J57_07705	COG0840	transmembrane signaling receptor activity
K3J57_07715	COG0784	Response regulator, receiver
K3J57_07715	COG2205	protein histidine kinase activity
K3J57_07715	COG5002	protein histidine kinase activity
K3J57_07730	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
K3J57_07785	COG4964	Belongs to the GSP D family
K3J57_07850	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
K3J57_07855	COG3264	Mechanosensitive ion channel
K3J57_07855	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
K3J57_07865	COG0494	nUDIX hydrolase
K3J57_07875	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
K3J57_07885	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
K3J57_07890	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
K3J57_07905	COG0604	alcohol dehydrogenase
K3J57_07910	COG0404	The glycine cleavage system catalyzes the degradation of glycine
K3J57_07930	COG3738	Protein conserved in bacteria
K3J57_07945	COG0114	fumarate hydratase activity
K3J57_07975	COG0785	Cytochrome C biogenesis protein
K3J57_07980	COG0425	Belongs to the sulfur carrier protein TusA family
K3J57_07985	COG1530	ribonuclease E activity
K3J57_07990	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
K3J57_07995	COG1164	Oligoendopeptidase f
K3J57_08015	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
K3J57_08045	COG0564	pseudouridine synthase activity
K3J57_08080	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
K3J57_08085	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
K3J57_08090	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
K3J57_08090	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
K3J57_08100	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
K3J57_08125	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
K3J57_08125	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
K3J57_08135	COG0432	Pfam Uncharacterised protein family UPF0047
K3J57_08155	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
K3J57_08160	COG0358	DNA primase activity
K3J57_08165	COG1309	transcriptional regulator
K3J57_08185	COG1335	isochorismatase
K3J57_08190	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
K3J57_08200	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
K3J57_08210	COG1984	allophanate hydrolase subunit 2
K3J57_08280	COG0824	Thioesterase
K3J57_08280	COG1250	3-hydroxyacyl-CoA dehydrogenase
K3J57_08290	COG3246	L-lysine catabolic process to acetate
K3J57_08300	COG0667	Aldo Keto reductase
K3J57_08305	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_08335	COG0513	Belongs to the DEAD box helicase family
K3J57_08345	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
K3J57_08355	COG1007	ATP synthesis coupled electron transport
K3J57_08370	COG0713	ATP synthesis coupled electron transport
K3J57_08385	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
K3J57_08390	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
K3J57_08425	COG0649	NAD binding
K3J57_08435	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
K3J57_08440	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
K3J57_08450	COG1024	Enoyl-CoA hydratase
K3J57_08465	COG4770	biotin carboxylase activity
K3J57_08470	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
K3J57_08480	COG1960	acyl-CoA dehydrogenase activity
K3J57_08490	COG0546	phosphoglycolate phosphatase activity
K3J57_08495	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
K3J57_08515	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
K3J57_08525	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
K3J57_08530	COG1473	amidohydrolase
K3J57_08535	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
K3J57_08555	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
K3J57_08560	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
K3J57_08565	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
K3J57_08580	COG0275	rRNA processing
K3J57_08585	COG2001	Belongs to the MraZ family
K3J57_08590	COG0489	protein tyrosine kinase activity
K3J57_08600	COG0210	DNA helicase
K3J57_08605	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
K3J57_08605	COG1754	DNA topoisomerase type I activity
K3J57_08605	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
K3J57_08605	COG1754	DNA topoisomerase type I activity
K3J57_08610	COG3273	potassium ion transport
K3J57_08610	COG0471	metal ion transport
K3J57_08635	COG2226	methyltransferase
K3J57_08645	COG0277	FAD linked oxidase domain protein
K3J57_08650	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_08685	COG4964	Belongs to the GSP D family
K3J57_08740	COG1201	RNA secondary structure unwinding
K3J57_08755	COG1024	Enoyl-CoA hydratase
K3J57_08760	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
K3J57_08765	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
K3J57_08770	COG2759	Belongs to the formate--tetrahydrofolate ligase family
K3J57_08775	COG3239	Fatty acid desaturase
K3J57_08785	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
K3J57_08790	COG0037	tRNA processing
K3J57_08800	COG2885	chlorophyll binding
K3J57_08825	COG0824	Thioesterase
K3J57_08840	COG2255	four-way junction helicase activity
K3J57_08845	COG0632	four-way junction helicase activity
K3J57_08855	COG1053	succinate dehydrogenase
K3J57_08870	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
K3J57_08885	COG0330	HflC and HflK could
K3J57_08890	COG0330	HflC and HflK could
K3J57_08900	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
K3J57_08905	COG2832	Protein of unknown function (DUF454)
K3J57_08910	COG1760	l-serine dehydratase
K3J57_08935	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
K3J57_08945	COG0504	CTP synthase activity
K3J57_08975	COG4215	(ABC) transporter
K3J57_08985	COG0518	GMP synthase (glutamine-hydrolyzing) activity
K3J57_08985	COG0519	Catalyzes the synthesis of GMP from XMP
K3J57_08990	COG0174	glutamine synthetase
K3J57_08995	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
K3J57_09000	COG0583	DNA-binding transcription factor activity
K3J57_09005	COG0658	competence protein
K3J57_09005	COG2333	competence protein COMEC
K3J57_09010	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
K3J57_09020	COG1024	Enoyl-CoA hydratase
K3J57_09025	COG3088	subunit of a heme lyase
K3J57_09030	COG1138	Cytochrome C-type biogenesis protein
K3J57_09055	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
K3J57_09060	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
K3J57_09065	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
K3J57_09080	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
K3J57_09085	COG1357	PFAM Pentapeptide repeats (8 copies)
K3J57_09095	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
K3J57_09110	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
K3J57_09115	COG0697	spore germination
K3J57_09120	COG2354	Protein conserved in bacteria
K3J57_09150	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
K3J57_09180	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
K3J57_09190	COG1024	Enoyl-CoA hydratase
K3J57_09210	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
K3J57_09215	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
K3J57_09220	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
K3J57_09235	COG4191	Histidine kinase
K3J57_09245	COG1522	sequence-specific DNA binding
K3J57_09255	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
K3J57_09260	COG0175	sulfate reduction
K3J57_09275	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
K3J57_09290	COG3608	succinylglutamate desuccinylase aspartoacylase
K3J57_09290	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
K3J57_09340	COG0418	dihydroorotase activity
K3J57_09345	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
K3J57_09350	COG0305	Participates in initiation and elongation during chromosome replication
K3J57_09370	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
K3J57_09380	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
K3J57_09395	COG0300	oxidoreductase activity
K3J57_09400	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
K3J57_09410	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
K3J57_09415	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
K3J57_09420	COG4133	protoheme IX ABC transporter activity
K3J57_09425	COG3737	Protein of unknown function (DUF498/DUF598)
K3J57_09435	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
K3J57_09440	COG1862	Preprotein translocase
K3J57_09450	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
K3J57_09460	COG0805	protein transport
K3J57_09470	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
K3J57_09480	COG3842	ATPase activity
K3J57_09495	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
K3J57_09515	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_09545	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
K3J57_09560	COG0659	secondary active sulfate transmembrane transporter activity
K3J57_09565	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
K3J57_09570	COG2311	Membrane
K3J57_09575	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
K3J57_09590	COG0612	Peptidase, M16
K3J57_09610	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
K3J57_09620	COG0109	protoheme IX farnesyltransferase activity
K3J57_09630	COG0312	modulator of DNA gyrase
K3J57_09645	COG0758	DNA mediated transformation
K3J57_09650	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
K3J57_09680	COG0131	Imidazoleglycerol-phosphate dehydratase
K3J57_09690	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
K3J57_09700	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
K3J57_09710	COG0107	imidazoleglycerol-phosphate synthase activity
K3J57_09715	COG0140	phosphoribosyl-ATP diphosphatase activity
K3J57_09730	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
K3J57_09740	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
K3J57_09740	COG1618	nucleotide phosphatase activity, acting on free nucleotides
K3J57_09745	COG3005	denitrification pathway
K3J57_09755	COG0348	domain, Protein
K3J57_09760	COG0437	4 iron, 4 sulfur cluster binding
K3J57_09765	COG0243	molybdopterin cofactor binding
K3J57_09775	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
K3J57_09775	COG2221	Nitrite and sulphite reductase 4Fe-4S
K3J57_09810	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
K3J57_09815	COG1530	ribonuclease E activity
K3J57_09825	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
K3J57_09850	COG5328	Belongs to the UPF0262 family
K3J57_09855	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
K3J57_09865	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
K3J57_09885	COG3916	Acyl-homoserine-lactone synthase
K3J57_09895	COG0318	PFAM AMP-dependent synthetase and ligase
K3J57_09900	COG1132	(ABC) transporter
K3J57_09905	COG0116	Belongs to the methyltransferase superfamily
K3J57_09905	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
K3J57_09915	COG2188	Transcriptional regulator
K3J57_09925	COG2267	carboxylic ester hydrolase activity
K3J57_09935	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
K3J57_09940	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_09960	COG0826	peptidase U32
K3J57_09970	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
K3J57_10010	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
K3J57_10020	COG1805	sodium ion transport
K3J57_10025	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
K3J57_10030	COG1477	protein flavinylation
K3J57_10055	COG0321	lipoyl(octanoyl) transferase activity
K3J57_10060	COG3474	cytochrome
K3J57_10080	COG0505	Belongs to the CarA family
K3J57_10090	COG1802	Transcriptional regulator
K3J57_10125	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
K3J57_10135	COG0697	spore germination
K3J57_10140	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
K3J57_10160	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
K3J57_10160	COG0574	Belongs to the PEP-utilizing enzyme family
K3J57_10165	COG0751	glycine-tRNA ligase activity
K3J57_10175	COG0752	glycyl-tRNA synthetase alpha subunit
K3J57_10190	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
K3J57_10200	COG1469	GTP cyclohydrolase I activity
K3J57_10210	COG2917	probably involved in intracellular septation
K3J57_10220	COG0552	protein localization to endoplasmic reticulum
K3J57_10250	COG3853	Toxic anion resistance protein (TelA)
K3J57_10275	COG1490	D-aminoacyl-tRNA deacylase activity
K3J57_10285	COG0287	Prephenate dehydrogenase
K3J57_10290	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
K3J57_10300	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
K3J57_10320	COG1108	ABC-type Mn2 Zn2 transport systems permease components
K3J57_10350	COG2197	response regulator
K3J57_10365	COG0444	Belongs to the ABC transporter superfamily
K3J57_10370	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
K3J57_10375	COG0601	transmembrane transport
K3J57_10420	COG0559	Belongs to the binding-protein-dependent transport system permease family
K3J57_10455	COG0471	metal ion transport
K3J57_10455	COG3273	potassium ion transport
K3J57_10465	COG1692	metallophosphoesterase
K3J57_10470	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
K3J57_10475	COG1214	PFAM Peptidase M22, glycoprotease
K3J57_10485	COG1744	ABC transporter substrate-binding protein PnrA-like
K3J57_10490	COG3845	ABC transporter
K3J57_10495	COG4603	Belongs to the binding-protein-dependent transport system permease family
K3J57_10500	COG1079	Belongs to the binding-protein-dependent transport system permease family
K3J57_10520	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_10535	COG2197	response regulator
K3J57_10545	COG0604	alcohol dehydrogenase
K3J57_10555	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
K3J57_10555	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
K3J57_10565	COG0813	purine-nucleoside phosphorylase activity
K3J57_10575	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
K3J57_10575	COG1618	nucleotide phosphatase activity, acting on free nucleotides
K3J57_10590	COG1250	3-hydroxyacyl-CoA dehydrogenase
K3J57_10595	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_10600	COG1960	acyl-CoA dehydrogenase activity
K3J57_10605	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
K3J57_10610	COG1396	sequence-specific DNA binding
K3J57_10610	COG3800	Transcriptional regulator
K3J57_10615	COG1804	L-carnitine dehydratase bile acid-inducible protein F
K3J57_10635	COG0625	glutathione transferase activity
K3J57_10650	COG2963	transposase activity
K3J57_10660	COG1129	ABC transporter
K3J57_10665	COG4214	carbohydrate transport
K3J57_10675	COG1609	Transcriptional regulator
K3J57_10680	COG0673	inositol 2-dehydrogenase activity
K3J57_10690	COG0673	inositol 2-dehydrogenase activity
K3J57_10695	COG3962	Belongs to the TPP enzyme family
K3J57_10700	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
K3J57_10710	COG0191	fructose-bisphosphate aldolase activity
K3J57_10715	COG0673	inositol 2-dehydrogenase activity
K3J57_10815	COG2353	YceI-like domain
K3J57_10825	COG0012	GTP binding
K3J57_10835	COG0159	tryptophan synthase activity
K3J57_10850	COG0513	Belongs to the DEAD box helicase family
K3J57_10875	COG0193	aminoacyl-tRNA hydrolase activity
K3J57_10890	COG0133	tryptophan synthase activity
K3J57_10895	COG0135	phosphoribosylanthranilate isomerase activity
K3J57_10905	COG0776	regulation of translation
K3J57_10915	COG0539	negative regulation of cytoplasmic translation
K3J57_10925	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
K3J57_10945	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
K3J57_10950	COG0220	tRNA (guanine-N7-)-methyltransferase activity
K3J57_10955	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
K3J57_10960	COG0815	Transfers the fatty acyl group on membrane lipoproteins
K3J57_10965	COG1253	flavin adenine dinucleotide binding
K3J57_10970	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
K3J57_10975	COG1702	phosphate starvation-inducible protein PhoH
K3J57_10990	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
K3J57_11000	COG1047	Peptidyl-prolyl cis-trans
K3J57_11010	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
K3J57_11015	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
K3J57_11020	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
K3J57_11025	COG2267	carboxylic ester hydrolase activity
K3J57_11040	COG2267	carboxylic ester hydrolase activity
K3J57_11050	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
K3J57_11060	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
K3J57_11105	COG0514	ATP-dependent DNA helicase (RecQ)
K3J57_11150	COG2824	Alkylphosphonate utilization operon protein PhnA
K3J57_11165	COG0481	GTPase activity
K3J57_11185	COG1105	Belongs to the carbohydrate kinase PfkB family
K3J57_11195	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
K3J57_11205	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
K3J57_11220	COG0227	Belongs to the bacterial ribosomal protein bL28 family
K3J57_11230	COG1132	(ABC) transporter
K3J57_11235	COG1703	isobutyryl-CoA mutase activity
K3J57_11240	COG1643	Atp-dependent helicase
K3J57_11250	COG0306	phosphate transporter
K3J57_11260	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
K3J57_11265	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
K3J57_11285	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
K3J57_11300	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
K3J57_11305	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
K3J57_11305	COG0512	Glutamine amidotransferase of anthranilate synthase
K3J57_11315	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
K3J57_11330	COG0346	lactoylglutathione lyase activity
K3J57_11345	COG0778	Nitroreductase
K3J57_11355	COG1872	DUF167
K3J57_11360	COG3152	Membrane
K3J57_11365	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
K3J57_11390	COG0540	Belongs to the ATCase OTCase family
K3J57_11405	COG1573	uracil-dna glycosylase
K3J57_11410	COG0521	Mo-molybdopterin cofactor biosynthetic process
K3J57_11420	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
K3J57_11430	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
K3J57_11450	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
K3J57_11455	COG0142	geranyltranstransferase activity
K3J57_11480	COG0583	DNA-binding transcription factor activity
K3J57_11485	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_11500	COG2818	Glycosylase
K3J57_11505	COG2951	lytic endotransglycosylase activity
K3J57_11520	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
K3J57_11525	COG0165	Argininosuccinate lyase
K3J57_11530	COG0019	diaminopimelate decarboxylase activity
K3J57_11540	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
K3J57_11565	COG1162	GTPase activity
K3J57_11575	COG0737	Belongs to the 5'-nucleotidase family
K3J57_11580	COG2816	NAD+ diphosphatase activity
K3J57_11595	COG3474	cytochrome
K3J57_11600	COG4166	transmembrane transport
K3J57_11605	COG4174	ABC transporter (Permease)
K3J57_11610	COG4239	(ABC) transporter, permease
K3J57_11615	COG4172	Belongs to the ABC transporter superfamily
K3J57_11620	COG1686	Belongs to the peptidase S11 family
K3J57_11625	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
K3J57_11630	COG2813	Specifically methylates the guanine in position
K3J57_11640	COG0408	coproporphyrinogen oxidase activity
K3J57_11650	COG1846	Transcriptional regulator
K3J57_11655	COG0183	Belongs to the thiolase family
K3J57_11660	COG0181	hydroxymethylbilane synthase activity
K3J57_11665	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
K3J57_11675	COG0513	Belongs to the DEAD box helicase family
K3J57_11680	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
K3J57_11695	COG0288	reversible hydration of carbon dioxide
K3J57_11705	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
K3J57_11710	COG0791	NLP P60 protein
K3J57_11720	COG2050	protein possibly involved in aromatic compounds catabolism
K3J57_11745	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
K3J57_11760	COG0679	Auxin Efflux Carrier
K3J57_11770	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
K3J57_11775	COG1671	Belongs to the UPF0178 family
K3J57_11785	COG1280	lysine exporter protein (LysE YggA)
K3J57_11790	COG2897	thiosulfate sulfurtransferase activity
K3J57_11800	COG0004	ammonium transporteR
K3J57_11805	COG0347	Belongs to the P(II) protein family
K3J57_11835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
K3J57_11845	COG0584	glycerophosphoryl diester phosphodiesterase
K3J57_11855	COG2154	pterin-4-alpha-carbinolamine dehydratase
K3J57_11865	COG0742	ribosomal rna small subunit methyltransferase
K3J57_11870	COG0024	Methionine aminopeptidase
K3J57_11875	COG1489	DNA binding
K3J57_11880	COG1546	Belongs to the CinA family
K3J57_11880	COG1058	Belongs to the CinA family
K3J57_11900	COG0583	DNA-binding transcription factor activity
K3J57_11910	COG0446	pyridine nucleotide-disulphide oxidoreductase
K3J57_11910	COG1902	pentaerythritol trinitrate reductase activity
K3J57_11935	COG1266	CAAX protease self-immunity
K3J57_11940	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
K3J57_11945	COG0285	dihydrofolate synthase activity
K3J57_11960	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
K3J57_11975	COG0686	Belongs to the AlaDH PNT family
K3J57_11985	COG0668	transmembrane transport
K3J57_11990	COG1970	mechanosensitive ion channel activity
K3J57_12000	COG0072	phenylalanine-tRNA ligase activity
K3J57_12000	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
K3J57_12020	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
K3J57_12025	COG1595	DNA-templated transcription, initiation
K3J57_12030	COG3795	YCII-related domain
K3J57_12040	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
K3J57_12045	COG0291	Belongs to the bacterial ribosomal protein bL35 family
K3J57_12055	COG0469	pyruvate kinase activity
K3J57_12080	COG3384	dioxygenase
K3J57_12095	COG4948	Mandelate Racemase Muconate Lactonizing
K3J57_12120	COG0825	malonyl-CoA metabolic process
K3J57_12140	COG2884	Cell division ATP-binding protein ftsE
K3J57_12175	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
K3J57_12180	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
K3J57_12190	COG0232	Belongs to the dGTPase family. Type 2 subfamily
K3J57_12205	COG0284	orotidine-5'-phosphate decarboxylase activity
K3J57_12225	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
K3J57_12240	COG0257	Belongs to the bacterial ribosomal protein bL36 family
K3J57_12255	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
K3J57_12275	COG0559	Belongs to the binding-protein-dependent transport system permease family
K3J57_12305	COG3383	formate dehydrogenase (NAD+) activity
K3J57_12345	COG0612	Peptidase, M16
K3J57_12350	COG0612	Peptidase, M16
K3J57_12360	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
K3J57_12365	COG0138	bifunctional purine biosynthesis protein purh
K3J57_12385	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
K3J57_12390	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
K3J57_12395	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
K3J57_12400	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
K3J57_12420	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
K3J57_12430	COG1185	polyribonucleotide nucleotidyltransferase activity
K3J57_12440	COG1733	regulation of RNA biosynthetic process
K3J57_12450	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
K3J57_12455	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
K3J57_12465	COG0560	Phosphoserine phosphatase
K3J57_12490	COG0820	rRNA (adenine-C2-)-methyltransferase activity
K3J57_12510	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
K3J57_12515	COG2171	N-acyltransferase activity
K3J57_12555	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
K3J57_12560	COG0557	exoribonuclease II activity
K3J57_12565	COG2951	lytic endotransglycosylase activity
K3J57_12585	COG1051	belongs to the nudix hydrolase family
K3J57_12590	COG0793	Belongs to the peptidase S41A family
K3J57_12600	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
K3J57_12610	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
K3J57_12615	COG0799	negative regulation of ribosome biogenesis
K3J57_12625	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
K3J57_12625	COG3264	Mechanosensitive ion channel
K3J57_12630	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
K3J57_12635	COG0066	3-isopropylmalate dehydratase activity
K3J57_12650	COG0473	3-isopropylmalate dehydrogenase activity
K3J57_12665	COG1960	acyl-CoA dehydrogenase activity
K3J57_12670	COG2329	Antibiotic biosynthesis monooxygenase
K3J57_12680	COG2233	PERMEase
K3J57_12685	COG0277	FAD linked oxidase domain protein
K3J57_12695	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
K3J57_12700	COG2186	Transcriptional regulator
K3J57_12705	COG0560	Phosphoserine phosphatase
K3J57_12715	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
K3J57_12720	COG0765	amino acid transport
K3J57_12725	COG1126	abc transporter atp-binding protein
K3J57_12730	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
K3J57_12740	COG4608	Belongs to the ABC transporter superfamily
K3J57_12745	COG0444	Belongs to the ABC transporter superfamily
K3J57_12750	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
K3J57_12755	COG0601	transmembrane transport
K3J57_12760	COG0747	negative chemotaxis
K3J57_12765	COG1802	Transcriptional regulator
K3J57_12790	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
K3J57_12795	COG4172	Belongs to the ABC transporter superfamily
K3J57_12805	COG0601	transmembrane transport
K3J57_12815	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
K3J57_12825	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
K3J57_12845	COG0798	PFAM Bile acid sodium symporter
K3J57_12850	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
K3J57_12860	COG1349	DNA-binding transcription factor activity
K3J57_12875	COG2010	Cytochrome c
K3J57_12890	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
K3J57_12895	COG2010	Cytochrome c
K3J57_12900	COG3391	amine dehydrogenase activity
K3J57_12905	COG1522	sequence-specific DNA binding
K3J57_12920	COG0535	radical SAM domain protein
K3J57_12935	COG2197	response regulator
K3J57_12945	COG1024	Enoyl-CoA hydratase
K3J57_12975	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
K3J57_12990	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
K3J57_13010	COG1766	The M ring may be actively involved in energy transduction
K3J57_13020	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
K3J57_13025	COG1338	Plays a role in the flagellum-specific transport system
K3J57_13030	COG4948	Mandelate Racemase Muconate Lactonizing
K3J57_13040	COG0583	DNA-binding transcription factor activity
K3J57_13045	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
K3J57_13060	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
K3J57_13075	COG2176	DNA-directed DNA polymerase activity
K3J57_13075	COG5002	protein histidine kinase activity
K3J57_13080	COG0243	molybdopterin cofactor binding
K3J57_13175	COG0183	Belongs to the thiolase family
K3J57_13215	COG1674	ftsk spoiiie
K3J57_13225	COG0154	amidase activity
K3J57_13230	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
K3J57_13255	COG2835	tetraacyldisaccharide 4'-kinase activity
K3J57_13270	COG0708	Exodeoxyribonuclease III
K3J57_13280	COG0789	Transcriptional regulator
K3J57_13295	COG0745	RESPONSE REGULATOR receiver
K3J57_13330	COG0495	leucyl-tRNA aminoacylation
K3J57_13350	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
K3J57_13350	COG3264	Mechanosensitive ion channel
K3J57_13355	COG1024	Enoyl-CoA hydratase
K3J57_13360	COG4221	oxidoreductase activity
K3J57_13365	COG0312	modulator of DNA gyrase
K3J57_13370	COG0483	inositol monophosphate 1-phosphatase activity
K3J57_13375	COG1609	Transcriptional regulator
K3J57_13405	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
K3J57_13410	COG1917	Cupin 2, conserved barrel domain protein
K3J57_13415	COG0527	aspartate kinase activity
K3J57_13425	COG0006	proline dipeptidase activity
K3J57_13430	COG0583	DNA-binding transcription factor activity
K3J57_13435	COG4166	transmembrane transport
K3J57_13440	COG0601	transmembrane transport
K3J57_13445	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
K3J57_13455	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
K3J57_13460	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_13465	COG1522	sequence-specific DNA binding
K3J57_13470	COG2423	ornithine cyclodeaminase activity
K3J57_13475	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
K3J57_13480	COG0006	proline dipeptidase activity
K3J57_13490	COG1802	Transcriptional regulator
K3J57_13525	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
K3J57_13530	COG0297	glycogen (starch) synthase activity
K3J57_13540	COG0438	transferase activity, transferring glycosyl groups
K3J57_13565	COG0438	transferase activity, transferring glycosyl groups
K3J57_13590	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
K3J57_13595	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
K3J57_13615	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
K3J57_13615	COG0662	Cupin 2, conserved barrel domain protein
K3J57_13635	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
K3J57_13655	COG1194	a g-specific adenine glycosylase
K3J57_13665	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
K3J57_13670	COG3034	peptidoglycan biosynthetic process
K3J57_13675	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
K3J57_13680	COG0617	tRNA 3'-terminal CCA addition
K3J57_13685	COG0494	nUDIX hydrolase
K3J57_13695	COG0745	RESPONSE REGULATOR receiver
K3J57_13705	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
K3J57_13715	COG0137	argininosuccinate synthase activity
K3J57_13730	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
K3J57_13735	COG0473	3-isopropylmalate dehydrogenase activity
K3J57_13750	COG0435	Glutathione S-transferase
K3J57_13755	COG0281	malic enzyme
K3J57_13755	COG0280	phosphate acetyltransferase
K3J57_13760	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
K3J57_13765	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
K3J57_13770	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
K3J57_13775	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
K3J57_13780	COG1420	regulation of RNA biosynthetic process
K3J57_13785	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
K3J57_13790	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
K3J57_13795	COG0635	Involved in the biosynthesis of porphyrin-containing compound
K3J57_13810	COG0357	Ribosomal RNA small subunit methyltransferase G
K3J57_13815	COG0445	tRNA wobble uridine modification
K3J57_13820	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
K3J57_13825	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
K3J57_13830	COG1981	membrane
K3J57_13835	COG0424	maF-like protein
K3J57_13840	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
K3J57_13845	COG0237	dephospho-CoA kinase activity
K3J57_13850	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
K3J57_13860	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
K3J57_13865	COG3030	protein affecting phage T7 exclusion by the F plasmid
K3J57_13890	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
K3J57_13895	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
K3J57_13910	COG1040	competence protein
K3J57_13920	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
K3J57_13935	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
K3J57_13955	COG0779	Required for maturation of 30S ribosomal subunits
K3J57_13970	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
K3J57_13980	COG0494	nUDIX hydrolase
K3J57_13985	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
K3J57_13990	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
K3J57_13995	COG0653	protein targeting
K3J57_14005	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
K3J57_14010	COG2003	Belongs to the UPF0758 family
K3J57_14015	COG0484	heat shock protein binding
K3J57_14020	COG0443	Heat shock 70 kDa protein
K3J57_14040	COG1218	3'(2'),5'-bisphosphate nucleotidase
K3J57_14045	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
K3J57_14075	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
K3J57_14080	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
K3J57_14085	COG1137	ATPase activity
K3J57_14105	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
K3J57_14115	COG0437	4 iron, 4 sulfur cluster binding
K3J57_14120	COG0243	molybdopterin cofactor binding
K3J57_14125	COG0657	acetylesterase activity
K3J57_14135	COG1663	tetraacyldisaccharide 4'-kinase activity
K3J57_14160	COG0714	Associated with various cellular activities
K3J57_14180	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
K3J57_14195	COG2226	methyltransferase
K3J57_14210	COG4263	nitrous-oxide reductase activity
K3J57_14235	COG0437	4 iron, 4 sulfur cluster binding
K3J57_14240	COG0348	domain, Protein
K3J57_14265	COG1999	signal sequence binding
K3J57_14290	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
K3J57_14295	COG3178	'Phosphotransferase
K3J57_14300	COG0802	atpase or kinase
K3J57_14315	COG1999	signal sequence binding
K3J57_14320	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
K3J57_14340	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
K3J57_14350	COG1442	glycosyl transferase family 8
K3J57_14350	COG1216	Glycosyl transferase, family 2
K3J57_14360	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
K3J57_14365	COG0133	tryptophan synthase activity
K3J57_14370	COG1652	LysM domain
K3J57_14395	COG2350	Protein conserved in bacteria
K3J57_14400	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
K3J57_14425	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
K3J57_14450	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
K3J57_14470	COG5598	trimethylamine methyltransferase
K3J57_14475	COG0446	pyridine nucleotide-disulphide oxidoreductase
K3J57_14475	COG1902	pentaerythritol trinitrate reductase activity
K3J57_14480	COG0446	pyridine nucleotide-disulphide oxidoreductase
K3J57_14480	COG1902	pentaerythritol trinitrate reductase activity
K3J57_14485	COG0129	dihydroxy-acid dehydratase activity
K3J57_14495	COG2175	clavaminate synthase activity
K3J57_14515	COG3243	poly(R)-hydroxyalkanoic acid synthase
K3J57_14530	COG1228	amidohydrolase
K3J57_14535	COG2986	histidine ammonia-lyase
K3J57_14550	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
K3J57_14560	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
K3J57_14575	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
K3J57_14580	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
K3J57_14585	COG2808	Putative FMN-binding domain
K3J57_14630	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
K3J57_14645	COG1028	Short-chain dehydrogenase reductase Sdr
K3J57_14650	COG0697	spore germination
K3J57_14655	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
K3J57_14660	COG1418	mRNA catabolic process
K3J57_14680	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
K3J57_14685	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
K3J57_14695	COG1960	acyl-CoA dehydrogenase activity
K3J57_14725	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
K3J57_14730	COG0142	geranyltranstransferase activity
K3J57_14735	COG1722	exodeoxyribonuclease VII activity
K3J57_14740	COG0123	including yeast histone deacetylase and acetoin utilization protein
K3J57_14750	COG0745	RESPONSE REGULATOR receiver
K3J57_14755	COG1846	Transcriptional regulator
K3J57_14760	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
K3J57_14780	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
K3J57_14790	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
K3J57_14810	COG1968	undecaprenyl-diphosphatase activity
K3J57_14835	COG3617	BRO family, N-terminal domain
K3J57_14845	COG0328	RNA-DNA hybrid ribonuclease activity
K3J57_14850	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
K3J57_14870	COG0564	pseudouridine synthase activity
K3J57_14910	COG0179	Fumarylacetoacetate (FAA) hydrolase
K3J57_14920	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
K3J57_14925	COG1360	Flagellar Motor Protein
K3J57_14930	COG4786	Flagellar basal body rod
K3J57_14945	COG1706	bacterial-type flagellum-dependent cell motility
K3J57_14955	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
K3J57_14965	COG4786	Flagellar basal body rod
K3J57_14970	COG4786	Flagellar basal body rod
K3J57_14975	COG1987	bacterial-type flagellum assembly
K3J57_14980	COG1677	Flagellar hook-basal body complex protein FliE
K3J57_14985	COG1558	bacterial-type flagellum-dependent cell motility
K3J57_15040	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
K3J57_15050	COG2226	methyltransferase
K3J57_15060	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
K3J57_15065	COG1024	Enoyl-CoA hydratase
K3J57_15070	COG0268	Binds directly to 16S ribosomal RNA
K3J57_15075	COG1012	belongs to the aldehyde dehydrogenase family
K3J57_15080	COG4566	intracellular signal transduction
K3J57_15090	COG2358	TRAP transporter, solute receptor (TAXI family
K3J57_15130	COG0395	ABC-type sugar transport system, permease component
K3J57_15135	COG1175	transmembrane transport
K3J57_15140	COG3842	ATPase activity
K3J57_15145	COG3842	ATPase activity
K3J57_15250	COG0134	indole-3-glycerol-phosphate synthase activity
K3J57_15260	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
K3J57_15265	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
K3J57_15270	COG1960	acyl-CoA dehydrogenase activity
K3J57_15285	COG0662	Cupin 2, conserved barrel domain protein
K3J57_15295	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
K3J57_15295	COG4191	Histidine kinase
K3J57_15310	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
K3J57_15320	COG1136	(ABC) transporter
K3J57_15330	COG0745	RESPONSE REGULATOR receiver
K3J57_15340	COG1280	lysine exporter protein (LysE YggA)
K3J57_15385	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
K3J57_15395	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
K3J57_15420	COG1450	Type ii and iii secretion system protein
K3J57_15530	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
K3J57_15565	COG1215	transferase activity, transferring glycosyl groups
K3J57_15580	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
K3J57_15590	COG0698	ribose 5-phosphate isomerase
K3J57_15600	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
K3J57_15625	COG0010	Belongs to the arginase family
K3J57_15635	COG2183	response to ionizing radiation
K3J57_15645	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
K3J57_15665	COG3842	ATPase activity
K3J57_15680	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
K3J57_15685	COG4149	molybdate abc transporter
K3J57_15690	COG0725	ABC transporter, periplasmic molybdate-binding protein
K3J57_15715	COG1115	amino acid carrier protein
K3J57_15725	COG0404	The glycine cleavage system catalyzes the degradation of glycine
K3J57_15730	COG0509	glycine decarboxylation via glycine cleavage system
K3J57_15735	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
K3J57_15735	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
K3J57_15750	COG1192	Involved in chromosome partitioning
K3J57_15760	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
K3J57_15765	COG4134	Bacterial extracellular solute-binding protein
K3J57_15770	COG4135	transport system, permease component
K3J57_15775	COG4136	ATPase activity
K3J57_15780	COG1122	ATPase activity
K3J57_15785	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
K3J57_15790	COG1268	BioY protein
K3J57_15795	COG2351	hydroxyisourate hydrolase activity
K3J57_15825	COG1473	amidohydrolase
K3J57_15830	COG1522	sequence-specific DNA binding
K3J57_15835	COG2226	methyltransferase
K3J57_15845	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
K3J57_15845	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
K3J57_15850	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
K3J57_15855	COG0156	8-amino-7-oxononanoate synthase activity
K3J57_15860	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
K3J57_15870	COG0506	proline dehydrogenase activity
K3J57_15870	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
K3J57_15870	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
K3J57_15875	COG1522	sequence-specific DNA binding
K3J57_15880	COG1049	propionate catabolic process, 2-methylcitrate cycle
K3J57_15890	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
K3J57_15905	COG1183	phosphatidylcholine synthase activity
K3J57_15915	COG0310	cobalt ion transport
K3J57_15920	COG0310	cobalt ion transport
K3J57_15930	COG1122	ATPase activity
K3J57_15940	COG0174	glutamine synthetase
K3J57_15945	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
K3J57_15950	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
K3J57_15955	COG1396	sequence-specific DNA binding
K3J57_15955	COG3800	Transcriptional regulator
K3J57_15960	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
K3J57_15965	COG1960	acyl-CoA dehydrogenase activity