locus-tag class description K3X41_00005 PF00308 Bacterial dnaA protein K3X41_00005 PF08299 Bacterial dnaA protein helix-turn-helix K3X41_00005 PF11638 DnaA N-terminal domain K3X41_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain K3X41_00010 PF02767 DNA polymerase III beta subunit, central domain K3X41_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain K3X41_00015 PF02463 RecF/RecN/SMC N terminal domain K3X41_00025 PF00204 DNA gyrase B K3X41_00025 PF00986 DNA gyrase B subunit, carboxyl terminus K3X41_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_00025 PF01751 Toprim domain K3X41_00040 PF01322 Cytochrome C' K3X41_00045 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase K3X41_00045 PF00034 Cytochrome c K3X41_00045 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3X41_00050 PF00394 Multicopper oxidase K3X41_00050 PF07731 Multicopper oxidase K3X41_00050 PF07732 Multicopper oxidase K3X41_00050 PF10518 TAT (twin-arginine translocation) pathway signal sequence K3X41_00055 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3X41_00055 PF00034 Cytochrome c K3X41_00065 PF00403 Heavy-metal-associated domain K3X41_00070 PF09278 MerR, DNA binding K3X41_00070 PF00376 MerR family regulatory protein K3X41_00075 PF00491 Arginase family K3X41_00080 PF17810 Arginine decarboxylase helical bundle domain K3X41_00080 PF17944 Arginine decarboxylase C-terminal helical extension K3X41_00080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K3X41_00085 PF03435 Saccharopine dehydrogenase NADP binding domain K3X41_00085 PF16653 Saccharopine dehydrogenase C-terminal domain K3X41_00090 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K3X41_00095 PF00491 Arginase family K3X41_00100 PF01964 Radical SAM ThiC family K3X41_00100 PF13667 ThiC-associated domain K3X41_00105 PF01266 FAD dependent oxidoreductase K3X41_00115 PF05690 Thiazole biosynthesis protein ThiG K3X41_00120 PF02581 Thiamine monophosphate synthase K3X41_00125 PF08543 Phosphomethylpyrimidine kinase K3X41_00135 PF03480 Bacterial extracellular solute-binding protein, family 7 K3X41_00135 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K3X41_00145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_00150 PF00701 Dihydrodipicolinate synthetase family K3X41_00155 PF05544 Proline racemase K3X41_00160 PF01266 FAD dependent oxidoreductase K3X41_00165 PF05544 Proline racemase K3X41_00170 PF02615 Malate/L-lactate dehydrogenase K3X41_00175 PF07729 FCD domain K3X41_00175 PF00392 Bacterial regulatory proteins, gntR family K3X41_00180 PF00171 Aldehyde dehydrogenase family K3X41_00185 PF00205 Thiamine pyrophosphate enzyme, central domain K3X41_00185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3X41_00185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3X41_00190 PF08220 DeoR-like helix-turn-helix domain K3X41_00190 PF00455 DeoR C terminal sensor domain K3X41_00195 PF16350 FAD dependent oxidoreductase central domain K3X41_00195 PF01571 Aminomethyltransferase folate-binding domain K3X41_00195 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3X41_00195 PF01266 FAD dependent oxidoreductase K3X41_00210 PF00005 ABC transporter K3X41_00215 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_00220 PF03466 LysR substrate binding domain K3X41_00225 PF00266 Aminotransferase class-V K3X41_00230 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase K3X41_00235 PF00171 Aldehyde dehydrogenase family K3X41_00240 PF00202 Aminotransferase class-III K3X41_00250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K3X41_00250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3X41_00260 PF00459 Inositol monophosphatase family K3X41_00265 PF02690 Na+/Pi-cotransporter K3X41_00275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_00275 PF03466 LysR substrate binding domain K3X41_00285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_00285 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K3X41_00290 PF03480 Bacterial extracellular solute-binding protein, family 7 K3X41_00295 PF01266 FAD dependent oxidoreductase K3X41_00305 PF17806 Sarcosine oxidase A3 domain K3X41_00305 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_00310 PF01042 Endoribonuclease L-PSP K3X41_00325 PF00486 Transcriptional regulatory protein, C terminal K3X41_00325 PF00072 Response regulator receiver domain K3X41_00330 PF00512 His Kinase A (phospho-acceptor) domain K3X41_00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_00330 PF00672 HAMP domain K3X41_00350 PF00005 ABC transporter K3X41_00350 PF00664 ABC transporter transmembrane region K3X41_00355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K3X41_00355 PF00529 HlyD membrane-fusion protein of T1SS K3X41_00360 PF02515 CoA-transferase family III K3X41_00365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_00365 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_00365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_00370 PF06082 Exopolysaccharide biosynthesis protein YbjH K3X41_00390 PF02397 Bacterial sugar transferase K3X41_00395 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain K3X41_00395 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family K3X41_00400 PF00857 Isochorismatase family K3X41_00410 PF00202 Aminotransferase class-III K3X41_00415 PF00472 RF-1 domain K3X41_00420 PF02592 Putative vitamin uptake transporter K3X41_00430 PF03411 Penicillin-insensitive murein endopeptidase K3X41_00445 PF02325 YGGT family K3X41_00450 PF00271 Helicase conserved C-terminal domain K3X41_00450 PF00570 HRDC domain K3X41_00450 PF16124 RecQ zinc-binding K3X41_00450 PF00270 DEAD/DEAH box helicase K3X41_00450 PF09382 RQC domain K3X41_00455 PF03883 Peroxide stress protein YaaA K3X41_00460 PF00672 HAMP domain K3X41_00460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_00460 PF00512 His Kinase A (phospho-acceptor) domain K3X41_00460 PF01627 Hpt domain K3X41_00460 PF00072 Response regulator receiver domain K3X41_00460 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K3X41_00470 PF00445 Ribonuclease T2 family K3X41_00480 PF00698 Acyl transferase domain K3X41_00480 PF14765 Polyketide synthase dehydratase K3X41_00480 PF00550 Phosphopantetheine attachment site K3X41_00480 PF08659 KR domain K3X41_00480 PF02801 Beta-ketoacyl synthase, C-terminal domain K3X41_00480 PF00109 Beta-ketoacyl synthase, N-terminal domain K3X41_00480 PF08240 Alcohol dehydrogenase GroES-like domain K3X41_00480 PF16197 Ketoacyl-synthetase C-terminal extension K3X41_00480 PF00107 Zinc-binding dehydrogenase K3X41_00490 PF01165 Ribosomal protein S21 K3X41_00495 PF07690 Major Facilitator Superfamily K3X41_00505 PF00561 alpha/beta hydrolase fold K3X41_00505 PF08386 TAP-like protein K3X41_00515 PF02423 Ornithine cyclodeaminase/mu-crystallin family K3X41_00535 PF00155 Aminotransferase class I and II K3X41_00540 PF03186 CobD/Cbib protein K3X41_00555 PF02463 RecF/RecN/SMC N terminal domain K3X41_00560 PF02492 CobW/HypB/UreG, nucleotide-binding domain K3X41_00560 PF07683 Cobalamin synthesis protein cobW C-terminal domain K3X41_00575 PF02514 CobN/Magnesium Chelatase K3X41_00600 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K3X41_00610 PF03358 NADPH-dependent FMN reductase K3X41_00615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K3X41_00625 PF01266 FAD dependent oxidoreductase K3X41_00625 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K3X41_00630 PF01266 FAD dependent oxidoreductase K3X41_00630 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K3X41_00635 PF00892 EamA-like transporter family K3X41_00640 PF01464 Transglycosylase SLT domain K3X41_00640 PF14718 Soluble lytic murein transglycosylase L domain K3X41_00645 PF00701 Dihydrodipicolinate synthetase family K3X41_00655 PF01980 tRNA-methyltransferase O K3X41_00660 PF01668 SmpB protein K3X41_00670 PF00994 Probable molybdopterin binding domain K3X41_00670 PF03453 MoeA N-terminal region (domain I and II) K3X41_00670 PF03454 MoeA C-terminal region (domain IV) K3X41_00675 PF12804 MobA-like NTP transferase domain K3X41_00680 PF02634 FdhD/NarQ family K3X41_00695 PF03466 LysR substrate binding domain K3X41_00695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_00710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K3X41_00710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K3X41_00735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_00735 PF12806 Acetyl-CoA dehydrogenase C-terminal like K3X41_00735 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_00735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_00740 PF01300 Telomere recombination K3X41_00740 PF03481 Putative GTP-binding controlling metal-binding K3X41_00745 PF02622 Uncharacterized ACR, COG1678 K3X41_00760 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_00760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K3X41_00765 PF00672 HAMP domain K3X41_00765 PF13426 PAS domain K3X41_00765 PF00512 His Kinase A (phospho-acceptor) domain K3X41_00765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_00775 PF00111 2Fe-2S iron-sulfur cluster binding domain K3X41_00775 PF00970 Oxidoreductase FAD-binding domain K3X41_00780 PF00884 Sulfatase K3X41_00780 PF16347 Domain of unknown function (DUF4976) K3X41_00795 PF01903 CbiX K3X41_00800 PF02570 Precorrin-8X methylmutase K3X41_00810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3X41_00815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3X41_00820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3X41_00820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K3X41_00825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3X41_00835 PF00293 NUDIX domain K3X41_00840 PF03734 L,D-transpeptidase catalytic domain K3X41_00845 PF00155 Aminotransferase class I and II K3X41_00850 PF01327 Polypeptide deformylase K3X41_00855 PF01327 Polypeptide deformylase K3X41_00860 PF00551 Formyl transferase K3X41_00860 PF02911 Formyl transferase, C-terminal domain K3X41_00875 PF00075 RNase H K3X41_00885 PF02401 LytB protein K3X41_00895 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K3X41_00900 PF01192 RNA polymerase Rpb6 K3X41_00905 PF04607 Region found in RelA / SpoT proteins K3X41_00905 PF13291 ACT domain K3X41_00905 PF02824 TGS domain K3X41_00915 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ K3X41_00920 PF01810 LysE type translocator K3X41_00925 PF01648 4'-phosphopantetheinyl transferase superfamily K3X41_00930 PF10502 Signal peptidase, peptidase S26 K3X41_00935 PF14622 Ribonuclease-III-like K3X41_00935 PF00035 Double-stranded RNA binding motif K3X41_00940 PF01926 50S ribosome-binding GTPase K3X41_00940 PF07650 KH domain K3X41_00950 PF11967 Recombination protein O N terminal K3X41_00950 PF02565 Recombination protein O C terminal K3X41_00975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_00975 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_00975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_00990 PF01293 Phosphoenolpyruvate carboxykinase K3X41_00995 PF00072 Response regulator receiver domain K3X41_00995 PF00486 Transcriptional regulatory protein, C terminal K3X41_01000 PF13756 Stimulus-sensing domain K3X41_01000 PF13755 Sensor N-terminal transmembrane domain K3X41_01000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_01000 PF00672 HAMP domain K3X41_01000 PF00512 His Kinase A (phospho-acceptor) domain K3X41_01005 PF07475 HPr Serine kinase C-terminal domain K3X41_01005 PF02603 HPr Serine kinase N terminus K3X41_01010 PF03668 P-loop ATPase protein family K3X41_01020 PF00381 PTS HPr component phosphorylation site K3X41_01030 PF00672 HAMP domain K3X41_01030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K3X41_01030 PF02203 Tar ligand binding domain homologue K3X41_01040 PF00766 Electron transfer flavoprotein FAD-binding domain K3X41_01040 PF01012 Electron transfer flavoprotein domain K3X41_01045 PF01012 Electron transfer flavoprotein domain K3X41_01060 PF01923 Cobalamin adenosyltransferase K3X41_01070 PF00106 short chain dehydrogenase K3X41_01080 PF03989 DNA gyrase C-terminal domain, beta-propeller K3X41_01080 PF00521 DNA gyrase/topoisomerase IV, subunit A K3X41_01090 PF01435 Peptidase family M48 K3X41_01095 PF03144 Elongation factor Tu domain 2 K3X41_01095 PF00009 Elongation factor Tu GTP binding domain K3X41_01095 PF03143 Elongation factor Tu C-terminal domain K3X41_01110 PF00467 KOW motif K3X41_01110 PF02357 Transcription termination factor nusG K3X41_01115 PF00298 Ribosomal protein L11, RNA binding domain K3X41_01115 PF03946 Ribosomal protein L11, N-terminal domain K3X41_01120 PF00687 Ribosomal protein L1p/L10e family K3X41_01125 PF00466 Ribosomal protein L10 K3X41_01130 PF16320 Ribosomal protein L7/L12 dimerisation domain K3X41_01130 PF00542 Ribosomal protein L7/L12 C-terminal domain K3X41_01135 PF04560 RNA polymerase Rpb2, domain 7 K3X41_01135 PF00562 RNA polymerase Rpb2, domain 6 K3X41_01135 PF04563 RNA polymerase beta subunit K3X41_01135 PF04561 RNA polymerase Rpb2, domain 2 K3X41_01135 PF04565 RNA polymerase Rpb2, domain 3 K3X41_01135 PF10385 RNA polymerase beta subunit external 1 domain K3X41_01140 PF04997 RNA polymerase Rpb1, domain 1 K3X41_01140 PF04998 RNA polymerase Rpb1, domain 5 K3X41_01140 PF05000 RNA polymerase Rpb1, domain 4 K3X41_01140 PF00623 RNA polymerase Rpb1, domain 2 K3X41_01140 PF04983 RNA polymerase Rpb1, domain 3 K3X41_01150 PF00164 Ribosomal protein S12/S23 K3X41_01155 PF00177 Ribosomal protein S7p/S5e K3X41_01160 PF00679 Elongation factor G C-terminus K3X41_01160 PF14492 Elongation Factor G, domain II K3X41_01160 PF03764 Elongation factor G, domain IV K3X41_01160 PF00009 Elongation factor Tu GTP binding domain K3X41_01160 PF03144 Elongation factor Tu domain 2 K3X41_01165 PF00009 Elongation factor Tu GTP binding domain K3X41_01165 PF03143 Elongation factor Tu C-terminal domain K3X41_01165 PF03144 Elongation factor Tu domain 2 K3X41_01170 PF00338 Ribosomal protein S10p/S20e K3X41_01175 PF00297 Ribosomal protein L3 K3X41_01180 PF00573 Ribosomal protein L4/L1 family K3X41_01185 PF00276 Ribosomal protein L23 K3X41_01200 PF03947 Ribosomal Proteins L2, C-terminal domain K3X41_01200 PF00181 Ribosomal Proteins L2, RNA binding domain K3X41_01205 PF00203 Ribosomal protein S19 K3X41_01210 PF00237 Ribosomal protein L22p/L17e K3X41_01215 PF07650 KH domain K3X41_01215 PF00189 Ribosomal protein S3, C-terminal domain K3X41_01220 PF00252 Ribosomal protein L16p/L10e K3X41_01260 PF00831 Ribosomal L29 protein K3X41_01265 PF00366 Ribosomal protein S17 K3X41_01270 PF00238 Ribosomal protein L14p/L23e K3X41_01275 PF00467 KOW motif K3X41_01275 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 K3X41_01280 PF00281 Ribosomal protein L5 K3X41_01280 PF00673 ribosomal L5P family C-terminus K3X41_01285 PF00253 Ribosomal protein S14p/S29e K3X41_01290 PF00410 Ribosomal protein S8 K3X41_01295 PF00347 Ribosomal protein L6 K3X41_01300 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast K3X41_01305 PF00333 Ribosomal protein S5, N-terminal domain K3X41_01305 PF03719 Ribosomal protein S5, C-terminal domain K3X41_01310 PF00327 Ribosomal protein L30p/L7e K3X41_01325 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A K3X41_01330 PF00344 SecY translocase K3X41_01340 PF00416 Ribosomal protein S13/S18 K3X41_01345 PF00411 Ribosomal protein S11 K3X41_01350 PF01000 RNA polymerase Rpb3/RpoA insert domain K3X41_01350 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain K3X41_01350 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain K3X41_01355 PF01196 Ribosomal protein L17 K3X41_01365 PF00004 ATPase family associated with various cellular activities (AAA) K3X41_01365 PF16193 AAA C-terminal domain K3X41_01365 PF12002 MgsA AAA+ ATPase C terminal K3X41_01375 PF02537 CrcB-like protein, Camphor Resistance (CrcB) K3X41_01380 PF01479 S4 domain K3X41_01380 PF00849 RNA pseudouridylate synthase K3X41_01385 PF13419 Haloacid dehalogenase-like hydrolase K3X41_01395 PF00497 Bacterial extracellular solute-binding proteins, family 3 K3X41_01400 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_01405 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_01410 PF00005 ABC transporter K3X41_01435 PF00696 Amino acid kinase family K3X41_01445 PF01926 50S ribosome-binding GTPase K3X41_01455 PF02096 60Kd inner membrane protein K3X41_01455 PF14849 YidC periplasmic domain K3X41_01460 PF00563 EAL domain K3X41_01460 PF00990 Diguanylate cyclase, GGDEF domain K3X41_01460 PF08447 PAS fold K3X41_01460 PF08448 PAS fold K3X41_01465 PF01171 PP-loop family K3X41_01480 PF01809 Putative membrane protein insertion efficiency factor K3X41_01485 PF00825 Ribonuclease P K3X41_01490 PF00468 Ribosomal protein L34 K3X41_01495 PF05035 2-keto-3-deoxy-galactonokinase K3X41_01500 PF04107 Glutamate-cysteine ligase family 2(GCS2) K3X41_01520 PF04452 RNA methyltransferase K3X41_01525 PF01040 UbiA prenyltransferase family K3X41_01530 PF05736 OprF membrane domain K3X41_01530 PF00691 OmpA family K3X41_01550 PF01205 Uncharacterized protein family UPF0029 K3X41_01550 PF09186 Domain of unknown function (DUF1949) K3X41_01555 PF01219 Prokaryotic diacylglycerol kinase K3X41_01565 PF00265 Thymidine kinase K3X41_01570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3X41_01570 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K3X41_01575 PF01588 Putative tRNA binding domain K3X41_01580 PF03807 NADP oxidoreductase coenzyme F420-dependent K3X41_01580 PF14748 Pyrroline-5-carboxylate reductase dimerisation K3X41_01590 PF02687 FtsX-like permease family K3X41_01590 PF12704 MacB-like periplasmic core domain K3X41_01595 PF00005 ABC transporter K3X41_01600 PF17103 Stealth protein CR4, conserved region 4 K3X41_01600 PF17102 Stealth protein CR3, conserved region 3 K3X41_01600 PF11380 Stealth protein CR2, conserved region 2 K3X41_01600 PF17101 Stealth protein CR1, conserved region 1 K3X41_01615 PF00986 DNA gyrase B subunit, carboxyl terminus K3X41_01615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_01615 PF01751 Toprim domain K3X41_01615 PF00204 DNA gyrase B K3X41_01620 PF08713 DNA alkylation repair enzyme K3X41_01625 PF01416 tRNA pseudouridine synthase K3X41_01630 PF04317 YcjX-like family, DUF463 K3X41_01640 PF05128 Domain of unknown function (DUF697) K3X41_01665 PF08264 Anticodon-binding domain of tRNA K3X41_01665 PF00133 tRNA synthetases class I (I, L, M and V) K3X41_01670 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K3X41_01670 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K3X41_01675 PF00005 ABC transporter K3X41_01680 PF01061 ABC-2 type transporter K3X41_01685 PF06965 Na+/H+ antiporter 1 K3X41_01685 PF01343 Peptidase family S49 K3X41_01695 PF01699 Sodium/calcium exchanger protein K3X41_01705 PF02151 UvrB/uvrC motif K3X41_01705 PF08459 UvrC Helix-hairpin-helix N-terminal K3X41_01705 PF12826 Helix-hairpin-helix motif K3X41_01705 PF01541 GIY-YIG catalytic domain K3X41_01710 PF01066 CDP-alcohol phosphatidyltransferase K3X41_01720 PF02391 MoaE protein K3X41_01730 PF01066 CDP-alcohol phosphatidyltransferase K3X41_01735 PF00589 Phage integrase family K3X41_01735 PF02899 Phage integrase, N-terminal SAM-like domain K3X41_01745 PF00923 Transaldolase/Fructose-6-phosphate aldolase K3X41_01750 PF18074 Primosomal protein N C-terminal domain K3X41_01750 PF17764 3′ DNA-binding domain (3′BD) K3X41_01750 PF00270 DEAD/DEAH box helicase K3X41_01750 PF18319 PriA DNA helicase Cys-rich region (CRR) domain K3X41_01755 PF04143 Sulphur transport K3X41_01765 PF01625 Peptide methionine sulfoxide reductase K3X41_01785 PF00111 2Fe-2S iron-sulfur cluster binding domain K3X41_01795 PF07690 Major Facilitator Superfamily K3X41_01805 PF00132 Bacterial transferase hexapeptide (six repeats) K3X41_01810 PF00155 Aminotransferase class I and II K3X41_01810 PF00392 Bacterial regulatory proteins, gntR family K3X41_01815 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K3X41_01815 PF02843 Phosphoribosylglycinamide synthetase, C domain K3X41_01815 PF02844 Phosphoribosylglycinamide synthetase, N domain K3X41_01820 PF02601 Exonuclease VII, large subunit K3X41_01820 PF13742 OB-fold nucleic acid binding domain K3X41_01825 PF01479 S4 domain K3X41_01825 PF00849 RNA pseudouridylate synthase K3X41_01830 PF14437 MafB19-like deaminase K3X41_01850 PF02686 Glu-tRNAGln amidotransferase C subunit K3X41_01855 PF01425 Amidase K3X41_01865 PF01510 N-acetylmuramoyl-L-alanine amidase K3X41_01875 PF00471 Ribosomal protein L33 K3X41_01890 PF01027 Inhibitor of apoptosis-promoting Bax1 K3X41_01900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_01900 PF03466 LysR substrate binding domain K3X41_01910 PF14765 Polyketide synthase dehydratase K3X41_01910 PF08659 KR domain K3X41_01910 PF02801 Beta-ketoacyl synthase, C-terminal domain K3X41_01910 PF00550 Phosphopantetheine attachment site K3X41_01910 PF16197 Ketoacyl-synthetase C-terminal extension K3X41_01910 PF00107 Zinc-binding dehydrogenase K3X41_01910 PF08240 Alcohol dehydrogenase GroES-like domain K3X41_01910 PF00109 Beta-ketoacyl synthase, N-terminal domain K3X41_01910 PF00698 Acyl transferase domain K3X41_01915 PF01381 Helix-turn-helix K3X41_01920 PF00459 Inositol monophosphatase family K3X41_01925 PF01979 Amidohydrolase family K3X41_01930 PF01979 Amidohydrolase family K3X41_01935 PF00571 CBS domain K3X41_01935 PF01769 Divalent cation transporter K3X41_01935 PF03448 MgtE intracellular N domain K3X41_01940 PF01812 5-formyltetrahydrofolate cyclo-ligase family K3X41_01945 PF03600 Citrate transporter K3X41_01945 PF02080 TrkA-C domain K3X41_01950 PF01810 LysE type translocator K3X41_01955 PF01037 Lrp/AsnC ligand binding domain K3X41_01960 PF01047 MarR family K3X41_01970 PF01709 Transcriptional regulator K3X41_01980 PF00881 Nitroreductase family K3X41_01990 PF00892 EamA-like transporter family K3X41_01995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3X41_02000 PF02548 Ketopantoate hydroxymethyltransferase K3X41_02005 PF02569 Pantoate-beta-alanine ligase K3X41_02010 PF01546 Peptidase family M20/M25/M40 K3X41_02010 PF07687 Peptidase dimerisation domain K3X41_02045 PF07509 Protein of unknown function (DUF1523) K3X41_02050 PF00171 Aldehyde dehydrogenase family K3X41_02055 PF01791 DeoC/LacD family aldolase K3X41_02060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3X41_02065 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_02070 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_02070 PF12911 N-terminal TM domain of oligopeptide transport permease C K3X41_02075 PF00005 ABC transporter K3X41_02075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3X41_02080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3X41_02080 PF00005 ABC transporter K3X41_02090 PF13380 CoA binding domain K3X41_02090 PF00583 Acetyltransferase (GNAT) family K3X41_02090 PF13607 Succinyl-CoA ligase like flavodoxin domain K3X41_02095 PF00850 Histone deacetylase domain K3X41_02105 PF01266 FAD dependent oxidoreductase K3X41_02110 PF00248 Aldo/keto reductase family K3X41_02120 PF13202 EF hand K3X41_02120 PF00923 Transaldolase/Fructose-6-phosphate aldolase K3X41_02125 PF02608 ABC transporter substrate-binding protein PnrA-like K3X41_02130 PF00027 Cyclic nucleotide-binding domain K3X41_02130 PF00520 Ion transport protein K3X41_02135 PF02653 Branched-chain amino acid transport system / permease component K3X41_02140 PF02653 Branched-chain amino acid transport system / permease component K3X41_02145 PF00005 ABC transporter K3X41_02155 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K3X41_02155 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase K3X41_02160 PF00111 2Fe-2S iron-sulfur cluster binding domain K3X41_02160 PF01799 [2Fe-2S] binding domain K3X41_02170 PF07733 Bacterial DNA polymerase III alpha NTPase domain K3X41_02170 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K3X41_02170 PF14579 Helix-hairpin-helix motif K3X41_02170 PF02811 PHP domain K3X41_02175 PF04102 SlyX K3X41_02180 PF03129 Anticodon binding domain K3X41_02180 PF13393 Histidyl-tRNA synthetase K3X41_02185 PF13393 Histidyl-tRNA synthetase K3X41_02190 PF01634 ATP phosphoribosyltransferase K3X41_02195 PF00579 tRNA synthetases class I (W and Y) K3X41_02205 PF03023 Lipid II flippase MurJ K3X41_02210 PF08335 GlnD PII-uridylyltransferase K3X41_02210 PF01966 HD domain K3X41_02220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3X41_02225 PF02021 Uncharacterised protein family UPF0102 K3X41_02230 PF02951 Prokaryotic glutathione synthetase, N-terminal domain K3X41_02230 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain K3X41_02235 PF07859 alpha/beta hydrolase fold K3X41_02240 PF01078 Magnesium chelatase, subunit ChlI K3X41_02240 PF13335 Magnesium chelatase, subunit ChlI C-terminal K3X41_02255 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase K3X41_02265 PF04127 DNA / pantothenate metabolism flavoprotein K3X41_02265 PF02441 Flavoprotein K3X41_02270 PF00692 dUTPase K3X41_02275 PF00899 ThiF family K3X41_02290 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_02295 PF01432 Peptidase family M3 K3X41_02300 PF01545 Cation efflux family K3X41_02300 PF16916 Dimerisation domain of Zinc Transporter K3X41_02315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3X41_02315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K3X41_02330 PF01266 FAD dependent oxidoreductase K3X41_02330 PF16350 FAD dependent oxidoreductase central domain K3X41_02330 PF01571 Aminomethyltransferase folate-binding domain K3X41_02330 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3X41_02365 PF00085 Thioredoxin K3X41_02370 PF01597 Glycine cleavage H-protein K3X41_02380 PF01554 MatE K3X41_02390 PF00749 tRNA synthetases class I (E and Q), catalytic domain K3X41_02410 PF00795 Carbon-nitrogen hydrolase K3X41_02410 PF02540 NAD synthase K3X41_02420 PF08502 LeuA allosteric (dimerisation) domain K3X41_02420 PF00682 HMGL-like K3X41_02430 PF04085 rod shape-determining protein MreC K3X41_02440 PF03717 Penicillin-binding Protein dimerisation domain K3X41_02440 PF00905 Penicillin binding protein transpeptidase domain K3X41_02445 PF01098 Cell cycle protein K3X41_02450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3X41_02470 PF01389 OmpA-like transmembrane domain K3X41_02470 PF00691 OmpA family K3X41_02480 PF17871 AAA lid domain K3X41_02480 PF07724 AAA domain (Cdc48 subfamily) K3X41_02480 PF00004 ATPase family associated with various cellular activities (AAA) K3X41_02480 PF10431 C-terminal, D2-small domain, of ClpB protein K3X41_02480 PF02861 Clp amino terminal domain, pathogenicity island component K3X41_02485 PF16123 Hydroxyacylglutathione hydrolase C-terminus K3X41_02485 PF00753 Metallo-beta-lactamase superfamily K3X41_02495 PF08241 Methyltransferase domain K3X41_02505 PF00213 ATP synthase delta (OSCP) subunit K3X41_02510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K3X41_02510 PF00306 ATP synthase alpha/beta chain, C terminal domain K3X41_02510 PF02874 ATP synthase alpha/beta family, beta-barrel domain K3X41_02515 PF00231 ATP synthase K3X41_02520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K3X41_02520 PF02874 ATP synthase alpha/beta family, beta-barrel domain K3X41_02525 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain K3X41_02535 PF07690 Major Facilitator Superfamily K3X41_02540 PF09458 H-type lectin domain K3X41_02545 PF14572 Phosphoribosyl synthetase-associated domain K3X41_02545 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase K3X41_02555 PF00364 Biotin-requiring enzyme K3X41_02555 PF00561 alpha/beta hydrolase fold K3X41_02560 PF01212 Beta-eliminating lyase K3X41_02565 PF03692 Putative zinc- or iron-chelating domain K3X41_02575 PF06574 FAD synthetase K3X41_02575 PF01687 Riboflavin kinase K3X41_02580 PF01575 MaoC like domain K3X41_02595 PF01368 DHH family K3X41_02595 PF02833 DHHA2 domain K3X41_02605 PF03150 Di-haem cytochrome c peroxidase K3X41_02610 PF00166 Chaperonin 10 Kd subunit K3X41_02615 PF00118 TCP-1/cpn60 chaperonin family K3X41_02630 PF04055 Radical SAM superfamily K3X41_02635 PF13545 Crp-like helix-turn-helix domain K3X41_02635 PF00027 Cyclic nucleotide-binding domain K3X41_02645 PF00115 Cytochrome C and Quinol oxidase polypeptide I K3X41_02660 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3X41_02660 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP K3X41_02665 PF13746 4Fe-4S dicluster domain K3X41_02665 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase K3X41_02665 PF12801 4Fe-4S binding domain K3X41_02675 PF00403 Heavy-metal-associated domain K3X41_02680 PF03597 Cytochrome oxidase maturation protein cbb3-type K3X41_02685 PF00196 Bacterial regulatory proteins, luxR family K3X41_02685 PF00072 Response regulator receiver domain K3X41_02690 PF13472 GDSL-like Lipase/Acylhydrolase family K3X41_02695 PF00005 ABC transporter K3X41_02715 PF13085 2Fe-2S iron-sulfur cluster binding domain K3X41_02715 PF13237 4Fe-4S dicluster domain K3X41_02720 PF00890 FAD binding domain K3X41_02720 PF02910 Fumarate reductase flavoprotein C-term K3X41_02725 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K3X41_02730 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K3X41_02735 PF01575 MaoC like domain K3X41_02745 PF03328 HpcH/HpaI aldolase/citrate lyase family K3X41_02760 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain K3X41_02760 PF00056 lactate/malate dehydrogenase, NAD binding domain K3X41_02770 PF08442 ATP-grasp domain K3X41_02770 PF00549 CoA-ligase K3X41_02780 PF02629 CoA binding domain K3X41_02780 PF00549 CoA-ligase K3X41_02785 PF16078 2-oxoglutarate dehydrogenase N-terminus K3X41_02785 PF02779 Transketolase, pyrimidine binding domain K3X41_02785 PF16870 2-oxoglutarate dehydrogenase C-terminal K3X41_02785 PF00676 Dehydrogenase E1 component K3X41_02790 PF02817 e3 binding domain K3X41_02790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K3X41_02790 PF00364 Biotin-requiring enzyme K3X41_02805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K3X41_02805 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_02835 PF08521 Two-component sensor kinase N-terminal K3X41_02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_02835 PF00512 His Kinase A (phospho-acceptor) domain K3X41_02840 PF00486 Transcriptional regulatory protein, C terminal K3X41_02840 PF00072 Response regulator receiver domain K3X41_02855 PF01970 Tripartite tricarboxylate transporter TctA family K3X41_02860 PF13660 Domain of unknown function (DUF4147) K3X41_02860 PF05161 MOFRL family K3X41_02865 PF02525 Flavodoxin-like fold K3X41_02870 PF03466 LysR substrate binding domain K3X41_02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_02880 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K3X41_02885 PF00119 ATP synthase A chain K3X41_02890 PF00137 ATP synthase subunit C K3X41_02895 PF00430 ATP synthase B/B' CF(0) K3X41_02900 PF00430 ATP synthase B/B' CF(0) K3X41_02910 PF00392 Bacterial regulatory proteins, gntR family K3X41_02910 PF07729 FCD domain K3X41_02915 PF00691 OmpA family K3X41_02915 PF00223 Photosystem I psaA/psaB protein K3X41_02920 PF12833 Helix-turn-helix domain K3X41_02920 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K3X41_02920 PF02805 Metal binding domain of Ada K3X41_02920 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K3X41_02925 PF10576 Iron-sulfur binding domain of endonuclease III K3X41_02925 PF00633 Helix-hairpin-helix motif K3X41_02925 PF00730 HhH-GPD superfamily base excision DNA repair protein K3X41_02930 PF00294 pfkB family carbohydrate kinase K3X41_02935 PF02566 OsmC-like protein K3X41_02950 PF01230 HIT domain K3X41_02960 PF01367 5'-3' exonuclease, C-terminal SAM fold K3X41_02960 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain K3X41_02960 PF00476 DNA polymerase family A K3X41_02960 PF01612 3'-5' exonuclease K3X41_02965 PF01545 Cation efflux family K3X41_02965 PF16916 Dimerisation domain of Zinc Transporter K3X41_02980 PF01261 Xylose isomerase-like TIM barrel K3X41_02990 PF07726 ATPase family associated with various cellular activities (AAA) K3X41_02990 PF17863 AAA lid domain K3X41_03010 PF02913 FAD linked oxidases, C-terminal domain K3X41_03010 PF01565 FAD binding domain K3X41_03015 PF01565 FAD binding domain K3X41_03020 PF13183 4Fe-4S dicluster domain K3X41_03020 PF02754 Cysteine-rich domain K3X41_03030 PF00011 Hsp20/alpha crystallin family K3X41_03035 PF00171 Aldehyde dehydrogenase family K3X41_03040 PF03576 Peptidase family S58 K3X41_03050 PF06224 Winged helix DNA-binding domain K3X41_03060 PF00171 Aldehyde dehydrogenase family K3X41_03065 PF00005 ABC transporter K3X41_03065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3X41_03070 PF12911 N-terminal TM domain of oligopeptide transport permease C K3X41_03070 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_03075 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_03080 PF01883 Iron-sulfur cluster assembly protein K3X41_03080 PF10609 NUBPL iron-transfer P-loop NTPase K3X41_03095 PF01197 Ribosomal protein L31 K3X41_03100 PF01245 Ribosomal protein L19 K3X41_03105 PF01746 tRNA (Guanine-1)-methyltransferase K3X41_03115 PF01782 RimM N-terminal domain K3X41_03115 PF05239 PRC-barrel domain K3X41_03120 PF00881 Nitroreductase family K3X41_03125 PF00886 Ribosomal protein S16 K3X41_03145 PF02978 Signal peptide binding domain K3X41_03145 PF00448 SRP54-type protein, GTPase domain K3X41_03145 PF02881 SRP54-type protein, helical bundle domain K3X41_03150 PF00582 Universal stress protein family K3X41_03165 PF00581 Rhodanese-like domain K3X41_03165 PF17773 UPF0176 acylphosphatase like domain K3X41_03175 PF02698 DUF218 domain K3X41_03185 PF00005 ABC transporter K3X41_03185 PF00571 CBS domain K3X41_03190 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_03200 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K3X41_03205 PF00440 Bacterial regulatory proteins, tetR family K3X41_03205 PF13977 BetI-type transcriptional repressor, C-terminal K3X41_03210 PF00884 Sulfatase K3X41_03210 PF12411 Choline sulfatase enzyme C terminal K3X41_03215 PF00171 Aldehyde dehydrogenase family K3X41_03220 PF05199 GMC oxidoreductase K3X41_03220 PF00732 GMC oxidoreductase K3X41_03230 PF06114 IrrE N-terminal-like domain K3X41_03230 PF01381 Helix-turn-helix K3X41_03230 PF09856 Predicted transcriptional regulator (DUF2083) K3X41_03235 PF07690 Major Facilitator Superfamily K3X41_03240 PF01039 Carboxyl transferase domain K3X41_03265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3X41_03265 PF18140 Propionyl-coenzyme A carboxylase BT domain K3X41_03265 PF02785 Biotin carboxylase C-terminal domain K3X41_03265 PF00289 Biotin carboxylase, N-terminal domain K3X41_03265 PF00364 Biotin-requiring enzyme K3X41_03275 PF02310 B12 binding domain K3X41_03275 PF01642 Methylmalonyl-CoA mutase K3X41_03285 PF06965 Na+/H+ antiporter 1 K3X41_03290 PF00226 DnaJ domain K3X41_03290 PF05099 Tellurite resistance protein TerB K3X41_03310 PF02541 Ppx/GppA phosphatase family K3X41_03315 PF02503 Polyphosphate kinase middle domain K3X41_03315 PF13090 Polyphosphate kinase C-terminal domain 2 K3X41_03315 PF17941 Polyphosphate kinase C-terminal domain 1 K3X41_03315 PF13089 Polyphosphate kinase N-terminal domain K3X41_03325 PF01594 AI-2E family transporter K3X41_03335 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K3X41_03335 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_03340 PF03129 Anticodon binding domain K3X41_03340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K3X41_03350 PF02222 ATP-grasp domain K3X41_03350 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain K3X41_03355 PF00731 AIR carboxylase K3X41_03365 PF00011 Hsp20/alpha crystallin family K3X41_03375 PF01747 ATP-sulfurylase K3X41_03375 PF14306 PUA-like domain K3X41_03385 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_03390 PF01037 Lrp/AsnC ligand binding domain K3X41_03400 PF02578 Multi-copper polyphenol oxidoreductase laccase K3X41_03410 PF01790 Prolipoprotein diacylglyceryl transferase K3X41_03425 PF03167 Uracil DNA glycosylase superfamily K3X41_03440 PF06965 Na+/H+ antiporter 1 K3X41_03445 PF00005 ABC transporter K3X41_03455 PF00793 DAHP synthetase I family K3X41_03465 PF00535 Glycosyl transferase family 2 K3X41_03480 PF00391 PEP-utilising enzyme, mobile domain K3X41_03480 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K3X41_03500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_03510 PF00120 Glutamine synthetase, catalytic domain K3X41_03510 PF03951 Glutamine synthetase, beta-Grasp domain K3X41_03515 PF00171 Aldehyde dehydrogenase family K3X41_03520 PF00465 Iron-containing alcohol dehydrogenase K3X41_03525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_03525 PF08448 PAS fold K3X41_03525 PF13188 PAS domain K3X41_03525 PF00072 Response regulator receiver domain K3X41_03525 PF00512 His Kinase A (phospho-acceptor) domain K3X41_03535 PF02779 Transketolase, pyrimidine binding domain K3X41_03535 PF02780 Transketolase, C-terminal domain K3X41_03540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_03540 PF03466 LysR substrate binding domain K3X41_03545 PF12833 Helix-turn-helix domain K3X41_03545 PF01965 DJ-1/PfpI family K3X41_03550 PF01266 FAD dependent oxidoreductase K3X41_03555 PF00171 Aldehyde dehydrogenase family K3X41_03560 PF03466 LysR substrate binding domain K3X41_03560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_03565 PF01557 Fumarylacetoacetate (FAA) hydrolase family K3X41_03570 PF04851 Type III restriction enzyme, res subunit K3X41_03570 PF02151 UvrB/uvrC motif K3X41_03570 PF12344 Ultra-violet resistance protein B K3X41_03570 PF17757 UvrB interaction domain K3X41_03570 PF00271 Helicase conserved C-terminal domain K3X41_03580 PF00561 alpha/beta hydrolase fold K3X41_03590 PF05675 Protein of unknown function (DUF817) K3X41_03600 PF00464 Serine hydroxymethyltransferase K3X41_03605 PF01513 ATP-NAD kinase K3X41_03615 PF00158 Sigma-54 interaction domain K3X41_03615 PF00072 Response regulator receiver domain K3X41_03615 PF02954 Bacterial regulatory protein, Fis family K3X41_03620 PF13193 AMP-binding enzyme C-terminal domain K3X41_03620 PF00501 AMP-binding enzyme K3X41_03620 PF16177 Acetyl-coenzyme A synthetase N-terminus K3X41_03625 PF03949 Malic enzyme, NAD binding domain K3X41_03625 PF01515 Phosphate acetyl/butaryl transferase K3X41_03625 PF00390 Malic enzyme, N-terminal domain K3X41_03630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K3X41_03635 PF01676 Metalloenzyme superfamily K3X41_03640 PF00962 Adenosine/AMP deaminase K3X41_03660 PF00501 AMP-binding enzyme K3X41_03660 PF13193 AMP-binding enzyme C-terminal domain K3X41_03665 PF00892 EamA-like transporter family K3X41_03675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K3X41_03675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K3X41_03675 PF00378 Enoyl-CoA hydratase/isomerase K3X41_03685 PF02803 Thiolase, C-terminal domain K3X41_03685 PF00108 Thiolase, N-terminal domain K3X41_03690 PF00043 Glutathione S-transferase, C-terminal domain K3X41_03690 PF02798 Glutathione S-transferase, N-terminal domain K3X41_03700 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_03700 PF12806 Acetyl-CoA dehydrogenase C-terminal like K3X41_03700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_03700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_03715 PF09278 MerR, DNA binding K3X41_03715 PF00376 MerR family regulatory protein K3X41_03735 PF01554 MatE K3X41_03740 PF03960 ArsC family K3X41_03745 PF01180 Dihydroorotate dehydrogenase K3X41_03755 PF07883 Cupin domain K3X41_03755 PF05899 Protein of unknown function (DUF861) K3X41_03765 PF04115 Ureidoglycolate lyase K3X41_03775 PF02872 5'-nucleotidase, C-terminal domain K3X41_03775 PF00149 Calcineurin-like phosphoesterase K3X41_03785 PF02586 SOS response associated peptidase (SRAP) K3X41_03790 PF01425 Amidase K3X41_03795 PF13193 AMP-binding enzyme C-terminal domain K3X41_03795 PF00501 AMP-binding enzyme K3X41_03800 PF00120 Glutamine synthetase, catalytic domain K3X41_03805 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_03810 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_03815 PF00005 ABC transporter K3X41_03815 PF08402 TOBE domain K3X41_03820 PF13416 Bacterial extracellular solute-binding protein K3X41_03830 PF00202 Aminotransferase class-III K3X41_03835 PF12833 Helix-turn-helix domain K3X41_03835 PF01965 DJ-1/PfpI family K3X41_03845 PF14489 QueF-like protein K3X41_03850 PF04055 Radical SAM superfamily K3X41_03855 PF01242 6-pyruvoyl tetrahydropterin synthase K3X41_03860 PF06508 Queuosine biosynthesis protein QueC K3X41_03885 PF07685 CobB/CobQ-like glutamine amidotransferase domain K3X41_03895 PF01132 Elongation factor P (EF-P) OB domain K3X41_03895 PF08207 Elongation factor P (EF-P) KOW-like domain K3X41_03895 PF09285 Elongation factor P, C-terminal K3X41_03900 PF00849 RNA pseudouridylate synthase K3X41_03905 PF01571 Aminomethyltransferase folate-binding domain K3X41_03910 PF00005 ABC transporter K3X41_03910 PF00664 ABC transporter transmembrane region K3X41_03920 PF00155 Aminotransferase class I and II K3X41_03925 PF08264 Anticodon-binding domain of tRNA K3X41_03925 PF00133 tRNA synthetases class I (I, L, M and V) K3X41_03925 PF10458 Valyl tRNA synthetase tRNA binding arm K3X41_03930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K3X41_03930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K3X41_03930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K3X41_03930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K3X41_03935 PF13404 AsnC-type helix-turn-helix domain K3X41_03935 PF01037 Lrp/AsnC ligand binding domain K3X41_03940 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K3X41_03940 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K3X41_03950 PF02219 Methylenetetrahydrofolate reductase K3X41_03955 PF03466 LysR substrate binding domain K3X41_03955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_03960 PF00459 Inositol monophosphatase family K3X41_03985 PF00005 ABC transporter K3X41_04000 PF01321 Creatinase/Prolidase N-terminal domain K3X41_04000 PF00557 Metallopeptidase family M24 K3X41_04005 PF00005 ABC transporter K3X41_04005 PF08402 TOBE domain K3X41_04015 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_04020 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_04025 PF00574 Clp protease K3X41_04030 PF06689 ClpX C4-type zinc finger K3X41_04030 PF10431 C-terminal, D2-small domain, of ClpB protein K3X41_04030 PF07724 AAA domain (Cdc48 subfamily) K3X41_04050 PF03588 Leucyl/phenylalanyl-tRNA protein transferase K3X41_04055 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3X41_04055 PF00289 Biotin carboxylase, N-terminal domain K3X41_04055 PF02785 Biotin carboxylase C-terminal domain K3X41_04060 PF00364 Biotin-requiring enzyme K3X41_04070 PF08362 YcdC-like protein, C-terminal region K3X41_04070 PF00440 Bacterial regulatory proteins, tetR family K3X41_04075 PF00196 Bacterial regulatory proteins, luxR family K3X41_04075 PF00072 Response regulator receiver domain K3X41_04085 PF00501 AMP-binding enzyme K3X41_04085 PF13193 AMP-binding enzyme C-terminal domain K3X41_04095 PF16177 Acetyl-coenzyme A synthetase N-terminus K3X41_04095 PF00501 AMP-binding enzyme K3X41_04095 PF13193 AMP-binding enzyme C-terminal domain K3X41_04100 PF00005 ABC transporter K3X41_04105 PF00005 ABC transporter K3X41_04105 PF12399 Branched-chain amino acid ATP-binding cassette transporter K3X41_04115 PF02653 Branched-chain amino acid transport system / permease component K3X41_04125 PF09856 Predicted transcriptional regulator (DUF2083) K3X41_04125 PF01381 Helix-turn-helix K3X41_04125 PF06114 IrrE N-terminal-like domain K3X41_04130 PF00486 Transcriptional regulatory protein, C terminal K3X41_04130 PF00072 Response regulator receiver domain K3X41_04140 PF02702 Osmosensitive K+ channel His kinase sensor domain K3X41_04140 PF00512 His Kinase A (phospho-acceptor) domain K3X41_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_04140 PF13492 GAF domain K3X41_04140 PF13493 Domain of unknown function (DUF4118) K3X41_04150 PF01258 Prokaryotic dksA/traR C4-type zinc finger K3X41_04155 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K3X41_04155 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K3X41_04155 PF00378 Enoyl-CoA hydratase/isomerase K3X41_04165 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) K3X41_04170 PF02445 Quinolinate synthetase A protein K3X41_04175 PF02910 Fumarate reductase flavoprotein C-term K3X41_04175 PF00890 FAD binding domain K3X41_04180 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain K3X41_04180 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain K3X41_04270 PF03793 PASTA domain K3X41_04270 PF00069 Protein kinase domain K3X41_04280 PF00145 C-5 cytosine-specific DNA methylase K3X41_04285 PF03852 DNA mismatch endonuclease Vsr K3X41_04310 PF00732 GMC oxidoreductase K3X41_04310 PF05199 GMC oxidoreductase K3X41_04320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K3X41_04320 PF00672 HAMP domain K3X41_04330 PF01515 Phosphate acetyl/butaryl transferase K3X41_04330 PF07085 DRTGG domain K3X41_04335 PF01515 Phosphate acetyl/butaryl transferase K3X41_04340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3X41_04340 PF00205 Thiamine pyrophosphate enzyme, central domain K3X41_04340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3X41_04345 PF00392 Bacterial regulatory proteins, gntR family K3X41_04345 PF00155 Aminotransferase class I and II K3X41_04355 PF00202 Aminotransferase class-III K3X41_04360 PF00958 GMP synthase C terminal domain K3X41_04360 PF00117 Glutamine amidotransferase class-I K3X41_04360 PF02540 NAD synthase K3X41_04380 PF03061 Thioesterase superfamily K3X41_04395 PF00005 ABC transporter K3X41_04395 PF12848 ABC transporter K3X41_04405 PF01467 Cytidylyltransferase-like K3X41_04415 PF02798 Glutathione S-transferase, N-terminal domain K3X41_04415 PF00043 Glutathione S-transferase, C-terminal domain K3X41_04425 PF01921 tRNA synthetases class I (K) K3X41_04430 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) K3X41_04430 PF13229 Right handed beta helix region K3X41_04430 PF12708 Pectate lyase superfamily protein K3X41_04435 PF03976 Polyphosphate kinase 2 (PPK2) K3X41_04440 PF13406 Transglycosylase SLT domain K3X41_04445 PF01554 MatE K3X41_04455 PF00155 Aminotransferase class I and II K3X41_04480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K3X41_04495 PF02511 Thymidylate synthase complementing protein K3X41_04505 PF00313 'Cold-shock' DNA-binding domain K3X41_04510 PF03960 ArsC family K3X41_04530 PF05114 Protein of unknown function (DUF692) K3X41_04540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K3X41_04540 PF02824 TGS domain K3X41_04540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K3X41_04540 PF03129 Anticodon binding domain K3X41_04555 PF00561 alpha/beta hydrolase fold K3X41_04565 PF00561 alpha/beta hydrolase fold K3X41_04565 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K3X41_04580 PF01726 LexA DNA binding domain K3X41_04580 PF00717 Peptidase S24-like K3X41_04585 PF00994 Probable molybdopterin binding domain K3X41_04585 PF03453 MoeA N-terminal region (domain I and II) K3X41_04585 PF03454 MoeA C-terminal region (domain IV) K3X41_04590 PF01967 MoaC family K3X41_04595 PF00218 Indole-3-glycerol phosphate synthase K3X41_04600 PF03167 Uracil DNA glycosylase superfamily K3X41_04605 PF02885 Glycosyl transferase family, helical bundle domain K3X41_04605 PF00591 Glycosyl transferase family, a/b domain K3X41_04610 PF00117 Glutamine amidotransferase class-I K3X41_04630 PF00113 Enolase, C-terminal TIM barrel domain K3X41_04630 PF03952 Enolase, N-terminal domain K3X41_04635 PF00892 EamA-like transporter family K3X41_04640 PF01475 Ferric uptake regulator family K3X41_04645 PF02567 Phenazine biosynthesis-like protein K3X41_04650 PF00999 Sodium/hydrogen exchanger family K3X41_04660 PF02696 Uncharacterized ACR, YdiU/UPF0061 family K3X41_04665 PF00583 Acetyltransferase (GNAT) family K3X41_04670 PF01156 Inosine-uridine preferring nucleoside hydrolase K3X41_04685 PF01521 Iron-sulphur cluster biosynthesis K3X41_04690 PF01966 HD domain K3X41_04690 PF13286 Phosphohydrolase-associated domain K3X41_04695 PF03485 Arginyl tRNA synthetase N terminal domain K3X41_04695 PF05746 DALR anticodon binding domain K3X41_04695 PF00750 tRNA synthetases class I (R) K3X41_04705 PF00933 Glycosyl hydrolase family 3 N terminal domain K3X41_04710 PF02616 Segregation and condensation protein ScpA K3X41_04715 PF04079 Segregation and condensation complex subunit ScpB K3X41_04725 PF00692 dUTPase K3X41_04740 PF00216 Bacterial DNA-binding protein K3X41_04745 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K3X41_04745 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K3X41_04750 PF02504 Fatty acid synthesis protein K3X41_04755 PF01783 Ribosomal L32p protein family K3X41_04770 PF01641 SelR domain K3X41_04780 PF00005 ABC transporter K3X41_04780 PF16326 ABC transporter C-terminal domain K3X41_04790 PF03006 Haemolysin-III related K3X41_04795 PF00282 Pyridoxal-dependent decarboxylase conserved domain K3X41_04800 PF00121 Triosephosphate isomerase K3X41_04805 PF00156 Phosphoribosyl transferase domain K3X41_04810 PF01521 Iron-sulphur cluster biosynthesis K3X41_04825 PF01883 Iron-sulfur cluster assembly protein K3X41_04830 PF01702 Queuine tRNA-ribosyltransferase K3X41_04840 PF00004 ATPase family associated with various cellular activities (AAA) K3X41_04840 PF05362 Lon protease (S16) C-terminal proteolytic domain K3X41_04840 PF02190 ATP-dependent protease La (LON) substrate-binding domain K3X41_04865 PF00300 Histidine phosphatase superfamily (branch 1) K3X41_04890 PF00155 Aminotransferase class I and II K3X41_04900 PF04551 GcpE protein K3X41_04910 PF03652 Holliday junction resolvase K3X41_04920 PF01266 FAD dependent oxidoreductase K3X41_04930 PF01571 Aminomethyltransferase folate-binding domain K3X41_04930 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3X41_04930 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_04930 PF17806 Sarcosine oxidase A3 domain K3X41_04965 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K3X41_04965 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K3X41_04975 PF00892 EamA-like transporter family K3X41_04980 PF03641 Possible lysine decarboxylase K3X41_04990 PF00664 ABC transporter transmembrane region K3X41_04990 PF00005 ABC transporter K3X41_04995 PF00873 AcrB/AcrD/AcrF family K3X41_05015 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal K3X41_05015 PF01926 50S ribosome-binding GTPase K3X41_05030 PF01975 Survival protein SurE K3X41_05035 PF00106 short chain dehydrogenase K3X41_05050 PF13537 Glutamine amidotransferase domain K3X41_05050 PF00156 Phosphoribosyl transferase domain K3X41_05060 PF06745 KaiC K3X41_05060 PF18073 Rubredoxin metal binding domain K3X41_05075 PF00005 ABC transporter K3X41_05080 PF02405 Permease MlaE K3X41_05085 PF00842 Alanine racemase, C-terminal domain K3X41_05085 PF01168 Alanine racemase, N-terminal domain K3X41_05100 PF03951 Glutamine synthetase, beta-Grasp domain K3X41_05100 PF00120 Glutamine synthetase, catalytic domain K3X41_05105 PF00543 Nitrogen regulatory protein P-II K3X41_05110 PF03853 YjeF-related protein N-terminus K3X41_05130 PF05698 Bacterial trigger factor protein (TF) C-terminus K3X41_05130 PF05697 Bacterial trigger factor protein (TF) K3X41_05130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K3X41_05140 PF01281 Ribosomal protein L9, N-terminal domain K3X41_05140 PF03948 Ribosomal protein L9, C-terminal domain K3X41_05145 PF01084 Ribosomal protein S18 K3X41_05150 PF01250 Ribosomal protein S6 K3X41_05160 PF00698 Acyl transferase domain K3X41_05170 PF00550 Phosphopantetheine attachment site K3X41_05175 PF00109 Beta-ketoacyl synthase, N-terminal domain K3X41_05175 PF02801 Beta-ketoacyl synthase, C-terminal domain K3X41_05180 PF02618 YceG-like family K3X41_05195 PF04860 Phage portal protein K3X41_05275 PF00132 Bacterial transferase hexapeptide (six repeats) K3X41_05275 PF06426 Serine acetyltransferase, N-terminal K3X41_05285 PF00364 Biotin-requiring enzyme K3X41_05285 PF02817 e3 binding domain K3X41_05285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K3X41_05290 PF00364 Biotin-requiring enzyme K3X41_05290 PF02779 Transketolase, pyrimidine binding domain K3X41_05290 PF02780 Transketolase, C-terminal domain K3X41_05295 PF00676 Dehydrogenase E1 component K3X41_05305 PF00274 Fructose-bisphosphate aldolase class-I K3X41_05315 PF00162 Phosphoglycerate kinase K3X41_05320 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K3X41_05325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K3X41_05335 PF00425 chorismate binding enzyme K3X41_05335 PF04715 Anthranilate synthase component I, N terminal region K3X41_05345 PF00155 Aminotransferase class I and II K3X41_05350 PF00579 tRNA synthetases class I (W and Y) K3X41_05355 PF03702 Anhydro-N-acetylmuramic acid kinase K3X41_05365 PF05195 Aminopeptidase P, N-terminal domain K3X41_05365 PF00557 Metallopeptidase family M24 K3X41_05370 PF01546 Peptidase family M20/M25/M40 K3X41_05370 PF07687 Peptidase dimerisation domain K3X41_05375 PF11775 Cobalamin biosynthesis protein CobT VWA domain K3X41_05375 PF06213 Cobalamin biosynthesis protein CobT K3X41_05380 PF00565 Staphylococcal nuclease homologue K3X41_05385 PF07728 AAA domain (dynein-related subfamily) K3X41_05385 PF08406 CbbQ/NirQ/NorQ C-terminal K3X41_05385 PF12556 Cobaltochelatase CobS subunit N terminal K3X41_05390 PF00226 DnaJ domain K3X41_05405 PF01136 Peptidase family U32 K3X41_05405 PF16325 Peptidase family U32 C-terminal domain K3X41_05410 PF02934 GatB/GatE catalytic domain K3X41_05410 PF02637 GatB domain K3X41_05415 PF17432 Domain of unknown function (DUF3458_C) ARM repeats K3X41_05415 PF01433 Peptidase family M1 domain K3X41_05415 PF11940 Domain of unknown function (DUF3458) Ig-like fold K3X41_05420 PF01274 Malate synthase K3X41_05425 PF03928 Haem-degrading K3X41_05430 PF04070 Domain of unknown function (DUF378) K3X41_05435 PF02469 Fasciclin domain K3X41_05460 PF00034 Cytochrome c K3X41_05460 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase K3X41_05460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3X41_05465 PF00111 2Fe-2S iron-sulfur cluster binding domain K3X41_05465 PF01799 [2Fe-2S] binding domain K3X41_05470 PF00440 Bacterial regulatory proteins, tetR family K3X41_05470 PF08361 MAATS-type transcriptional repressor, C-terminal region K3X41_05475 PF00155 Aminotransferase class I and II K3X41_05485 PF11741 AMIN domain K3X41_05485 PF01520 N-acetylmuramoyl-L-alanine amidase K3X41_05490 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K3X41_05490 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K3X41_05510 PF05726 Pirin C-terminal cupin domain K3X41_05510 PF02678 Pirin K3X41_05520 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K3X41_05520 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch K3X41_05520 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K3X41_05525 PF02233 NAD(P) transhydrogenase beta subunit K3X41_05535 PF01098 Cell cycle protein K3X41_05540 PF04101 Glycosyltransferase family 28 C-terminal domain K3X41_05540 PF03033 Glycosyltransferase family 28 N-terminal domain K3X41_05545 PF02875 Mur ligase family, glutamate ligase domain K3X41_05545 PF01225 Mur ligase family, catalytic domain K3X41_05545 PF08245 Mur ligase middle domain K3X41_05560 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K3X41_05560 PF01565 FAD binding domain K3X41_05565 PF07478 D-ala D-ala ligase C-terminus K3X41_05565 PF01820 D-ala D-ala ligase N-terminus K3X41_05570 PF03799 Cell division protein FtsQ K3X41_05575 PF02491 SHS2 domain inserted in FTSA K3X41_05580 PF12327 FtsZ family, C-terminal domain K3X41_05580 PF00091 Tubulin/FtsZ family, GTPase domain K3X41_05585 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase K3X41_05590 PF13525 Outer membrane lipoprotein K3X41_05595 PF02463 RecF/RecN/SMC N terminal domain K3X41_05600 PF02913 FAD linked oxidases, C-terminal domain K3X41_05600 PF01565 FAD binding domain K3X41_05605 PF00654 Voltage gated chloride channel K3X41_05610 PF00398 Ribosomal RNA adenine dimethylase K3X41_05615 PF04166 Pyridoxal phosphate biosynthetic protein PdxA K3X41_05625 PF04453 LPS transport system D K3X41_05625 PF03968 OstA-like protein K3X41_05640 PF00883 Cytosol aminopeptidase family, catalytic domain K3X41_05655 PF01914 MarC family integral membrane protein K3X41_05660 PF00005 ABC transporter K3X41_05660 PF12848 ABC transporter K3X41_05665 PF00334 Nucleoside diphosphate kinase K3X41_05700 PF01627 Hpt domain K3X41_05700 PF00512 His Kinase A (phospho-acceptor) domain K3X41_05700 PF00072 Response regulator receiver domain K3X41_05700 PF00672 HAMP domain K3X41_05700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_05705 PF00072 Response regulator receiver domain K3X41_05705 PF00486 Transcriptional regulatory protein, C terminal K3X41_05710 PF00384 Molybdopterin oxidoreductase K3X41_05710 PF18364 Molybdopterin oxidoreductase N-terminal domain K3X41_05710 PF01568 Molydopterin dinucleotide binding domain K3X41_05715 PF01207 Dihydrouridine synthase (Dus) K3X41_05720 PF01925 Sulfite exporter TauE/SafE K3X41_05745 PF02515 CoA-transferase family III K3X41_05770 PF02219 Methylenetetrahydrofolate reductase K3X41_05780 PF02541 Ppx/GppA phosphatase family K3X41_05785 PF01728 FtsJ-like methyltransferase K3X41_05795 PF01037 Lrp/AsnC ligand binding domain K3X41_05825 PF00132 Bacterial transferase hexapeptide (six repeats) K3X41_05825 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K3X41_05830 PF00550 Phosphopantetheine attachment site K3X41_05835 PF02801 Beta-ketoacyl synthase, C-terminal domain K3X41_05835 PF00109 Beta-ketoacyl synthase, N-terminal domain K3X41_05845 PF05872 Bacterial protein of unknown function (DUF853) K3X41_05850 PF01595 Cyclin M transmembrane N-terminal domain K3X41_05850 PF03471 Transporter associated domain K3X41_05850 PF00571 CBS domain K3X41_05860 PF00909 Ammonium Transporter Family K3X41_05895 PF00672 HAMP domain K3X41_05895 PF00512 His Kinase A (phospho-acceptor) domain K3X41_05895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_05900 PF00596 Class II Aldolase and Adducin N-terminal domain K3X41_05910 PF00586 AIR synthase related protein, N-terminal domain K3X41_05910 PF02769 AIR synthase related protein, C-terminal domain K3X41_05915 PF00551 Formyl transferase K3X41_05920 PF01612 3'-5' exonuclease K3X41_05920 PF00570 HRDC domain K3X41_05930 PF02657 Fe-S metabolism associated domain K3X41_05945 PF02607 B12 binding domain K3X41_05945 PF02310 B12 binding domain K3X41_05950 PF04055 Radical SAM superfamily K3X41_05955 PF02574 Homocysteine S-methyltransferase K3X41_05955 PF02965 Vitamin B12 dependent methionine synthase, activation domain K3X41_05955 PF00809 Pterin binding enzyme K3X41_05955 PF02310 B12 binding domain K3X41_05955 PF02607 B12 binding domain K3X41_05970 PF01259 SAICAR synthetase K3X41_05975 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase K3X41_05985 PF02743 Cache domain K3X41_05985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_05985 PF00512 His Kinase A (phospho-acceptor) domain K3X41_05990 PF02954 Bacterial regulatory protein, Fis family K3X41_05990 PF00072 Response regulator receiver domain K3X41_05990 PF00158 Sigma-54 interaction domain K3X41_05995 PF13181 Tetratricopeptide repeat K3X41_06000 PF00829 Ribosomal prokaryotic L21 protein K3X41_06005 PF01016 Ribosomal L27 protein K3X41_06025 PF01926 50S ribosome-binding GTPase K3X41_06025 PF01018 GTP1/OBG K3X41_06030 PF00696 Amino acid kinase family K3X41_06030 PF01472 PUA domain K3X41_06035 PF00171 Aldehyde dehydrogenase family K3X41_06040 PF10090 Histidine phosphotransferase C-terminal domain K3X41_06075 PF02600 Disulfide bond formation protein DsbB K3X41_06080 PF09335 SNARE associated Golgi protein K3X41_06085 PF04228 Putative neutral zinc metallopeptidase K3X41_06100 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_06110 PF01053 Cys/Met metabolism PLP-dependent enzyme K3X41_06140 PF02653 Branched-chain amino acid transport system / permease component K3X41_06145 PF00005 ABC transporter K3X41_06150 PF12399 Branched-chain amino acid ATP-binding cassette transporter K3X41_06150 PF00005 ABC transporter K3X41_06155 PF13458 Periplasmic binding protein K3X41_06165 PF12833 Helix-turn-helix domain K3X41_06165 PF01965 DJ-1/PfpI family K3X41_06170 PF01474 Class-II DAHP synthetase family K3X41_06180 PF08340 Domain of unknown function (DUF1732) K3X41_06180 PF03755 YicC-like family, N-terminal region K3X41_06185 PF00625 Guanylate kinase K3X41_06190 PF00132 Bacterial transferase hexapeptide (six repeats) K3X41_06195 PF08534 Redoxin K3X41_06200 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family K3X41_06200 PF04055 Radical SAM superfamily K3X41_06210 PF00156 Phosphoribosyl transferase domain K3X41_06215 PF03364 Polyketide cyclase / dehydrase and lipid transport K3X41_06220 PF00589 Phage integrase family K3X41_06220 PF02899 Phage integrase, N-terminal SAM-like domain K3X41_06235 PF01202 Shikimate kinase K3X41_06240 PF01761 3-dehydroquinate synthase K3X41_06245 PF02464 Competence-damaged protein K3X41_06245 PF18146 Damage-inducible protein CinA KH domain K3X41_06245 PF00994 Probable molybdopterin binding domain K3X41_06255 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K3X41_06255 PF02542 YgbB family K3X41_06260 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K3X41_06265 PF01207 Dihydrouridine synthase (Dus) K3X41_06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_06270 PF00512 His Kinase A (phospho-acceptor) domain K3X41_06275 PF14532 Sigma-54 interaction domain K3X41_06275 PF02954 Bacterial regulatory protein, Fis family K3X41_06275 PF00072 Response regulator receiver domain K3X41_06280 PF00989 PAS fold K3X41_06280 PF00512 His Kinase A (phospho-acceptor) domain K3X41_06280 PF00672 HAMP domain K3X41_06280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_06285 PF02954 Bacterial regulatory protein, Fis family K3X41_06285 PF00158 Sigma-54 interaction domain K3X41_06285 PF00072 Response regulator receiver domain K3X41_06290 PF02080 TrkA-C domain K3X41_06290 PF02254 TrkA-N domain K3X41_06295 PF02386 Cation transport protein K3X41_06300 PF17209 Hfq protein K3X41_06305 PF13167 GTP-binding GTPase N-terminal K3X41_06305 PF16360 GTP-binding GTPase Middle Region K3X41_06305 PF01926 50S ribosome-binding GTPase K3X41_06315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K3X41_06315 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K3X41_06325 PF00490 Delta-aminolevulinic acid dehydratase K3X41_06335 PF00271 Helicase conserved C-terminal domain K3X41_06335 PF00270 DEAD/DEAH box helicase K3X41_06335 PF03461 TRCF domain K3X41_06335 PF02559 CarD-like/TRCF domain K3X41_06335 PF17757 UvrB interaction domain K3X41_06345 PF07690 Major Facilitator Superfamily K3X41_06355 PF00501 AMP-binding enzyme K3X41_06355 PF13193 AMP-binding enzyme C-terminal domain K3X41_06355 PF00550 Phosphopantetheine attachment site K3X41_06355 PF00668 Condensation domain K3X41_06360 PF08671 Anti-repressor SinI K3X41_06360 PF01381 Helix-turn-helix K3X41_06365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3X41_06375 PF01810 LysE type translocator K3X41_06385 PF04227 Indigoidine synthase A like protein K3X41_06390 PF01467 Cytidylyltransferase-like K3X41_06390 PF00294 pfkB family carbohydrate kinase K3X41_06400 PF00318 Ribosomal protein S2 K3X41_06405 PF00889 Elongation factor TS K3X41_06415 PF01220 Dehydroquinase class II K3X41_06435 PF01336 OB-fold nucleic acid binding domain K3X41_06435 PF02811 PHP domain K3X41_06435 PF14579 Helix-hairpin-helix motif K3X41_06435 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K3X41_06435 PF07733 Bacterial DNA polymerase III alpha NTPase domain K3X41_06460 PF00211 Adenylate and Guanylate cyclase catalytic domain K3X41_06470 PF00282 Pyridoxal-dependent decarboxylase conserved domain K3X41_06515 PF01266 FAD dependent oxidoreductase K3X41_06520 PF04267 Sarcosine oxidase, delta subunit family K3X41_06525 PF17806 Sarcosine oxidase A3 domain K3X41_06525 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_06525 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3X41_06525 PF01571 Aminomethyltransferase folate-binding domain K3X41_06535 PF01965 DJ-1/PfpI family K3X41_06535 PF12833 Helix-turn-helix domain K3X41_06545 PF00171 Aldehyde dehydrogenase family K3X41_06565 PF02615 Malate/L-lactate dehydrogenase K3X41_06570 PF02028 BCCT, betaine/carnitine/choline family transporter K3X41_06575 PF02028 BCCT, betaine/carnitine/choline family transporter K3X41_06580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K3X41_06580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K3X41_06590 PF05853 beta-keto acid cleavage enzyme K3X41_06595 PF00501 AMP-binding enzyme K3X41_06595 PF13193 AMP-binding enzyme C-terminal domain K3X41_06600 PF12833 Helix-turn-helix domain K3X41_06600 PF01965 DJ-1/PfpI family K3X41_06610 PF13569 Domain of unknown function (DUF4132) K3X41_06615 PF07728 AAA domain (dynein-related subfamily) K3X41_06625 PF05762 VWA domain containing CoxE-like protein K3X41_06635 PF00072 Response regulator receiver domain K3X41_06635 PF00486 Transcriptional regulatory protein, C terminal K3X41_06640 PF01895 PhoU domain K3X41_06645 PF00005 ABC transporter K3X41_06650 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_06655 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_06665 PF00990 Diguanylate cyclase, GGDEF domain K3X41_06670 PF16736 Single Cache-like K3X41_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_06670 PF00512 His Kinase A (phospho-acceptor) domain K3X41_06670 PF00989 PAS fold K3X41_06690 PF06253 Trimethylamine methyltransferase (MTTB) K3X41_06695 PF00117 Glutamine amidotransferase class-I K3X41_06695 PF00958 GMP synthase C terminal domain K3X41_06695 PF02540 NAD synthase K3X41_06720 PF04204 Homoserine O-succinyltransferase K3X41_06725 PF03976 Polyphosphate kinase 2 (PPK2) K3X41_06730 PF13977 BetI-type transcriptional repressor, C-terminal K3X41_06730 PF00440 Bacterial regulatory proteins, tetR family K3X41_06735 PF00266 Aminotransferase class-V K3X41_06750 PF01458 Uncharacterized protein family (UPF0051) K3X41_06755 PF00005 ABC transporter K3X41_06775 PF01458 Uncharacterized protein family (UPF0051) K3X41_06780 PF00266 Aminotransferase class-V K3X41_06790 PF02082 Transcriptional regulator K3X41_06795 PF02129 X-Pro dipeptidyl-peptidase (S15 family) K3X41_06815 PF02074 Carboxypeptidase Taq (M32) metallopeptidase K3X41_06820 PF02628 Cytochrome oxidase assembly protein K3X41_06825 PF03989 DNA gyrase C-terminal domain, beta-propeller K3X41_06825 PF00521 DNA gyrase/topoisomerase IV, subunit A K3X41_06835 PF01134 Glucose inhibited division protein A K3X41_06840 PF00749 tRNA synthetases class I (E and Q), catalytic domain K3X41_06845 PF01502 Phosphoribosyl-AMP cyclohydrolase K3X41_06855 PF08447 PAS fold K3X41_06855 PF13426 PAS domain K3X41_06855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K3X41_06860 PF17191 RecG wedge domain K3X41_06860 PF00270 DEAD/DEAH box helicase K3X41_06860 PF00271 Helicase conserved C-terminal domain K3X41_06865 PF03119 NAD-dependent DNA ligase C4 zinc finger domain K3X41_06865 PF00533 BRCA1 C Terminus (BRCT) domain K3X41_06865 PF01653 NAD-dependent DNA ligase adenylation domain K3X41_06865 PF03120 NAD-dependent DNA ligase OB-fold domain K3X41_06865 PF12826 Helix-hairpin-helix motif K3X41_06870 PF00072 Response regulator receiver domain K3X41_06870 PF00486 Transcriptional regulatory protein, C terminal K3X41_06890 PF02684 Lipid-A-disaccharide synthetase K3X41_06900 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 K3X41_06900 PF00132 Bacterial transferase hexapeptide (six repeats) K3X41_06905 PF07977 FabA-like domain K3X41_06915 PF01103 Surface antigen K3X41_06915 PF07244 Surface antigen variable number repeat K3X41_06925 PF17820 PDZ domain K3X41_06925 PF02163 Peptidase family M50 K3X41_06930 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase K3X41_06930 PF13288 DXP reductoisomerase C-terminal domain K3X41_06930 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain K3X41_06940 PF01255 Putative undecaprenyl diphosphate synthase K3X41_06945 PF01765 Ribosome recycling factor K3X41_06950 PF00696 Amino acid kinase family K3X41_06960 PF12833 Helix-turn-helix domain K3X41_06965 PF01464 Transglycosylase SLT domain K3X41_06970 PF00436 Single-strand binding protein family K3X41_06990 PF07943 Penicillin-binding protein 5, C-terminal domain K3X41_06990 PF00768 D-alanyl-D-alanine carboxypeptidase K3X41_06995 PF02223 Thymidylate kinase K3X41_07000 PF09115 DNA polymerase III, delta subunit, C terminal K3X41_07005 PF01026 TatD related DNase K3X41_07025 PF00108 Thiolase, N-terminal domain K3X41_07025 PF02803 Thiolase, C-terminal domain K3X41_07030 PF05138 Phenylacetic acid catabolic protein K3X41_07035 PF06243 Phenylacetic acid degradation B K3X41_07040 PF05138 Phenylacetic acid catabolic protein K3X41_07045 PF01883 Iron-sulfur cluster assembly protein K3X41_07050 PF00970 Oxidoreductase FAD-binding domain K3X41_07050 PF00111 2Fe-2S iron-sulfur cluster binding domain K3X41_07050 PF00175 Oxidoreductase NAD-binding domain K3X41_07060 PF00171 Aldehyde dehydrogenase family K3X41_07060 PF01575 MaoC like domain K3X41_07080 PF00380 Ribosomal protein S9/S16 K3X41_07085 PF00572 Ribosomal protein L13 K3X41_07100 PF00378 Enoyl-CoA hydratase/isomerase K3X41_07105 PF13230 Glutamine amidotransferases class-II K3X41_07110 PF00893 Small Multidrug Resistance protein K3X41_07115 PF00679 Elongation factor G C-terminus K3X41_07115 PF03144 Elongation factor Tu domain 2 K3X41_07115 PF00009 Elongation factor Tu GTP binding domain K3X41_07125 PF01411 tRNA synthetases class II (A) K3X41_07125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K3X41_07125 PF02272 DHHA1 domain K3X41_07130 PF00154 recA bacterial DNA recombination protein K3X41_07135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_07135 PF00512 His Kinase A (phospho-acceptor) domain K3X41_07135 PF08448 PAS fold K3X41_07135 PF13188 PAS domain K3X41_07135 PF00072 Response regulator receiver domain K3X41_07140 PF01189 16S rRNA methyltransferase RsmB/F K3X41_07140 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF K3X41_07140 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF K3X41_07145 PF00571 CBS domain K3X41_07145 PF00478 IMP dehydrogenase / GMP reductase domain K3X41_07150 PF00155 Aminotransferase class I and II K3X41_07160 PF01494 FAD binding domain K3X41_07165 PF01258 Prokaryotic dksA/traR C4-type zinc finger K3X41_07170 PF00004 ATPase family associated with various cellular activities (AAA) K3X41_07170 PF07724 AAA domain (Cdc48 subfamily) K3X41_07170 PF17871 AAA lid domain K3X41_07170 PF02861 Clp amino terminal domain, pathogenicity island component K3X41_07170 PF10431 C-terminal, D2-small domain, of ClpB protein K3X41_07190 PF12823 Domain of unknown function (DUF3817) K3X41_07215 PF10672 S-adenosylmethionine-dependent methyltransferase K3X41_07215 PF17785 PUA-like domain K3X41_07225 PF00920 Dehydratase family K3X41_07230 PF01081 KDPG and KHG aldolase K3X41_07240 PF00682 HMGL-like K3X41_07240 PF08502 LeuA allosteric (dimerisation) domain K3X41_07245 PF09190 DALR domain K3X41_07245 PF01406 tRNA synthetases class I (C) catalytic domain K3X41_07275 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_07275 PF18113 Rubredoxin binding C-terminal domain K3X41_07290 PF00106 short chain dehydrogenase K3X41_07295 PF01740 STAS domain K3X41_07295 PF00916 Sulfate permease family K3X41_07305 PF00753 Metallo-beta-lactamase superfamily K3X41_07315 PF04143 Sulphur transport K3X41_07325 PF00034 Cytochrome c K3X41_07330 PF00174 Oxidoreductase molybdopterin binding domain K3X41_07335 PF02872 5'-nucleotidase, C-terminal domain K3X41_07335 PF00149 Calcineurin-like phosphoesterase K3X41_07360 PF02683 Cytochrome C biogenesis protein transmembrane region K3X41_07375 PF04143 Sulphur transport K3X41_07380 PF01613 Flavin reductase like domain K3X41_07400 PF01053 Cys/Met metabolism PLP-dependent enzyme K3X41_07405 PF04402 Protein of unknown function (DUF541) K3X41_07415 PF01037 Lrp/AsnC ligand binding domain K3X41_07420 PF08447 PAS fold K3X41_07420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K3X41_07425 PF02277 Phosphoribosyltransferase K3X41_07430 PF02654 Cobalamin-5-phosphate synthase K3X41_07435 PF02559 CarD-like/TRCF domain K3X41_07440 PF11953 Domain of unknown function (DUF3470) K3X41_07440 PF00037 4Fe-4S binding domain K3X41_07445 PF01479 S4 domain K3X41_07470 PF00342 Phosphoglucose isomerase K3X41_07475 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K3X41_07480 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain K3X41_07480 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain K3X41_07485 PF00491 Arginase family K3X41_07505 PF02571 Precorrin-6x reductase CbiJ/CobK K3X41_07510 PF01888 CbiD K3X41_07515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3X41_07520 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K3X41_07520 PF07685 CobB/CobQ-like glutamine amidotransferase domain K3X41_07525 PF07690 Major Facilitator Superfamily K3X41_07535 PF08335 GlnD PII-uridylyltransferase K3X41_07535 PF03710 Glutamate-ammonia ligase adenylyltransferase K3X41_07555 PF04376 Arginine-tRNA-protein transferase, N terminus K3X41_07555 PF04377 Arginine-tRNA-protein transferase, C terminus K3X41_07560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3X41_07560 PF00205 Thiamine pyrophosphate enzyme, central domain K3X41_07560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3X41_07565 PF10369 Small subunit of acetolactate synthase K3X41_07575 PF08471 Class II vitamin B12-dependent ribonucleotide reductase K3X41_07575 PF02867 Ribonucleotide reductase, barrel domain K3X41_07590 PF00313 'Cold-shock' DNA-binding domain K3X41_07595 PF01243 Pyridoxamine 5'-phosphate oxidase K3X41_07595 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region K3X41_07605 PF00156 Phosphoribosyl transferase domain K3X41_07615 PF05175 Methyltransferase small domain K3X41_07615 PF17827 PrmC N-terminal domain K3X41_07620 PF00472 RF-1 domain K3X41_07620 PF03462 PCRF domain K3X41_07630 PF00491 Arginase family K3X41_07635 PF07687 Peptidase dimerisation domain K3X41_07635 PF01546 Peptidase family M20/M25/M40 K3X41_07640 PF03819 MazG nucleotide pyrophosphohydrolase domain K3X41_07645 PF13416 Bacterial extracellular solute-binding protein K3X41_07650 PF00293 NUDIX domain K3X41_07655 PF17755 UvrA DNA-binding domain K3X41_07655 PF17760 UvrA interaction domain K3X41_07670 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_07670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K3X41_07685 PF02547 Queuosine biosynthesis protein K3X41_07695 PF00578 AhpC/TSA family K3X41_07700 PF04305 Protein of unknown function (DUF455) K3X41_07705 PF01476 LysM domain K3X41_07705 PF08525 Opacity-associated protein A N-terminal motif K3X41_07705 PF01551 Peptidase family M23 K3X41_07720 PF03462 PCRF domain K3X41_07720 PF00472 RF-1 domain K3X41_07725 PF17912 MalK OB fold domain K3X41_07725 PF03459 TOBE domain K3X41_07725 PF00005 ABC transporter K3X41_07730 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_07735 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_07740 PF01547 Bacterial extracellular solute-binding protein K3X41_07750 PF00072 Response regulator receiver domain K3X41_07755 PF01584 CheW-like domain K3X41_07755 PF02895 Signal transducing histidine kinase, homodimeric domain K3X41_07755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_07755 PF01627 Hpt domain K3X41_07760 PF01584 CheW-like domain K3X41_07765 PF03705 CheR methyltransferase, all-alpha domain K3X41_07765 PF01739 CheR methyltransferase, SAM binding domain K3X41_07770 PF00072 Response regulator receiver domain K3X41_07790 PF03975 CheD chemotactic sensory transduction K3X41_07795 PF01339 CheB methylesterase K3X41_07795 PF00072 Response regulator receiver domain K3X41_07800 PF02203 Tar ligand binding domain homologue K3X41_07800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K3X41_07800 PF00672 HAMP domain K3X41_07810 PF00672 HAMP domain K3X41_07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_07810 PF00512 His Kinase A (phospho-acceptor) domain K3X41_07810 PF01627 Hpt domain K3X41_07810 PF00072 Response regulator receiver domain K3X41_07810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K3X41_07825 PF02421 Ferrous iron transport protein B K3X41_07825 PF17910 FeoB cytosolic helical domain K3X41_07825 PF07664 Ferrous iron transport protein B C terminus K3X41_07825 PF07670 Nucleoside recognition K3X41_07850 PF00437 Type II/IV secretion system protein K3X41_07880 PF00263 Bacterial type II and III secretion system protein K3X41_07880 PF04972 BON domain K3X41_07880 PF13629 Pilus formation protein N terminal region K3X41_07910 PF00884 Sulfatase K3X41_07915 PF00664 ABC transporter transmembrane region K3X41_07915 PF00005 ABC transporter K3X41_07920 PF00529 HlyD membrane-fusion protein of T1SS K3X41_07925 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) K3X41_07925 PF00413 Matrixin K3X41_07925 PF08548 Peptidase M10 serralysin C terminal K3X41_07940 PF02272 DHHA1 domain K3X41_07940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K3X41_07940 PF01411 tRNA synthetases class II (A) K3X41_07945 PF12794 Mechanosensitive ion channel inner membrane domain 1 K3X41_07945 PF12795 Mechanosensitive ion channel porin domain K3X41_07945 PF00924 Mechanosensitive ion channel K3X41_07950 PF00571 CBS domain K3X41_07950 PF00291 Pyridoxal-phosphate dependent enzyme K3X41_07955 PF00293 NUDIX domain K3X41_07970 PF00266 Aminotransferase class-V K3X41_07975 PF02028 BCCT, betaine/carnitine/choline family transporter K3X41_07990 PF00107 Zinc-binding dehydrogenase K3X41_07995 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3X41_07995 PF01571 Aminomethyltransferase folate-binding domain K3X41_08010 PF00392 Bacterial regulatory proteins, gntR family K3X41_08010 PF07729 FCD domain K3X41_08015 PF06940 Domain of unknown function (DUF1287) K3X41_08030 PF00206 Lyase K3X41_08030 PF10415 Fumarase C C-terminus K3X41_08050 PF00067 Cytochrome P450 K3X41_08060 PF02683 Cytochrome C biogenesis protein transmembrane region K3X41_08065 PF01206 Sulfurtransferase TusA K3X41_08070 PF10150 Ribonuclease E/G family K3X41_08070 PF12111 Polyribonucleotide phosphorylase C terminal K3X41_08070 PF00575 S1 RNA binding domain K3X41_08075 PF17092 Penicillin-binding protein OB-like domain K3X41_08075 PF00912 Transglycosylase K3X41_08075 PF00905 Penicillin binding protein transpeptidase domain K3X41_08080 PF08439 Oligopeptidase F K3X41_08080 PF01432 Peptidase family M3 K3X41_08095 PF01258 Prokaryotic dksA/traR C4-type zinc finger K3X41_08105 PF04545 Sigma-70, region 4 K3X41_08105 PF04542 Sigma-70 region 2 K3X41_08105 PF00140 Sigma-70 factor, region 1.2 K3X41_08120 PF13396 Phospholipase_D-nuclease N-terminal K3X41_08120 PF13091 PLD-like domain K3X41_08125 PF00849 RNA pseudouridylate synthase K3X41_08160 PF01029 NusB family K3X41_08165 PF00885 6,7-dimethyl-8-ribityllumazine synthase K3X41_08170 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase K3X41_08170 PF00925 GTP cyclohydrolase II K3X41_08180 PF00753 Metallo-beta-lactamase superfamily K3X41_08185 PF00677 Lumazine binding domain K3X41_08190 PF05159 Capsule polysaccharide biosynthesis protein K3X41_08200 PF05159 Capsule polysaccharide biosynthesis protein K3X41_08205 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K3X41_08205 PF01872 RibD C-terminal domain K3X41_08210 PF03477 ATP cone domain K3X41_08215 PF01894 Uncharacterised protein family UPF0047 K3X41_08225 PF01738 Dienelactone hydrolase family K3X41_08235 PF04546 Sigma-70, non-essential region K3X41_08235 PF03979 Sigma-70 factor, region 1.1 K3X41_08235 PF04539 Sigma-70 region 3 K3X41_08235 PF04542 Sigma-70 region 2 K3X41_08235 PF04545 Sigma-70, region 4 K3X41_08235 PF00140 Sigma-70 factor, region 1.2 K3X41_08240 PF08278 DNA primase DnaG DnaB-binding K3X41_08240 PF13662 Toprim domain K3X41_08240 PF08275 DNA primase catalytic core, N-terminal domain K3X41_08240 PF01807 CHC2 zinc finger K3X41_08240 PF10410 DnaB-helicase binding domain of primase K3X41_08245 PF00440 Bacterial regulatory proteins, tetR family K3X41_08255 PF01842 ACT domain K3X41_08255 PF00742 Homoserine dehydrogenase K3X41_08255 PF03447 Homoserine dehydrogenase, NAD binding domain K3X41_08260 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K3X41_08265 PF00857 Isochorismatase family K3X41_08270 PF17768 RecJ OB domain K3X41_08270 PF01368 DHH family K3X41_08270 PF02272 DHHA1 domain K3X41_08280 PF03746 LamB/YcsF family K3X41_08290 PF02626 Carboxyltransferase domain, subdomain A and B K3X41_08305 PF00563 EAL domain K3X41_08305 PF00990 Diguanylate cyclase, GGDEF domain K3X41_08305 PF03707 Bacterial signalling protein N terminal repeat K3X41_08315 PF13419 Haloacid dehalogenase-like hydrolase K3X41_08325 PF00072 Response regulator receiver domain K3X41_08325 PF00990 Diguanylate cyclase, GGDEF domain K3X41_08340 PF08281 Sigma-70, region 4 K3X41_08340 PF04542 Sigma-70 region 2 K3X41_08360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K3X41_08360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K3X41_08370 PF05853 beta-keto acid cleavage enzyme K3X41_08375 PF12833 Helix-turn-helix domain K3X41_08375 PF14525 AraC-binding-like domain K3X41_08380 PF00248 Aldo/keto reductase family K3X41_08385 PF00106 short chain dehydrogenase K3X41_08395 PF16658 Class II release factor RF3, C-terminal domain K3X41_08395 PF00009 Elongation factor Tu GTP binding domain K3X41_08395 PF03144 Elongation factor Tu domain 2 K3X41_08410 PF00270 DEAD/DEAH box helicase K3X41_08410 PF00271 Helicase conserved C-terminal domain K3X41_08415 PF17770 Ribonuclease J C-terminal domain K3X41_08415 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain K3X41_08415 PF12706 Beta-lactamase superfamily domain K3X41_08420 PF03309 Type III pantothenate kinase K3X41_08425 PF03099 Biotin/lipoate A/B protein ligase family K3X41_08425 PF02237 Biotin protein ligase C terminal domain K3X41_08430 PF00361 Proton-conducting membrane transporter K3X41_08435 PF00361 Proton-conducting membrane transporter K3X41_08435 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus K3X41_08440 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K3X41_08440 PF00361 Proton-conducting membrane transporter K3X41_08445 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K3X41_08450 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K3X41_08455 PF02627 Carboxymuconolactone decarboxylase family K3X41_08460 PF12838 4Fe-4S dicluster domain K3X41_08465 PF00146 NADH dehydrogenase K3X41_08475 PF00384 Molybdopterin oxidoreductase K3X41_08475 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal K3X41_08475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K3X41_08485 PF10531 SLBB domain K3X41_08485 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K3X41_08485 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit K3X41_08500 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit K3X41_08510 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit K3X41_08515 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit K3X41_08520 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K3X41_08525 PF00378 Enoyl-CoA hydratase/isomerase K3X41_08530 PF00682 HMGL-like K3X41_08540 PF00364 Biotin-requiring enzyme K3X41_08540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3X41_08540 PF18140 Propionyl-coenzyme A carboxylase BT domain K3X41_08540 PF00289 Biotin carboxylase, N-terminal domain K3X41_08540 PF02785 Biotin carboxylase C-terminal domain K3X41_08545 PF01039 Carboxyl transferase domain K3X41_08555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_08555 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_08555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_08560 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family K3X41_08565 PF13419 Haloacid dehalogenase-like hydrolase K3X41_08570 PF00132 Bacterial transferase hexapeptide (six repeats) K3X41_08570 PF12804 MobA-like NTP transferase domain K3X41_08575 PF01380 SIS domain K3X41_08590 PF13193 AMP-binding enzyme C-terminal domain K3X41_08590 PF00501 AMP-binding enzyme K3X41_08600 PF04055 Radical SAM superfamily K3X41_08600 PF06463 Molybdenum Cofactor Synthesis C K3X41_08605 PF07687 Peptidase dimerisation domain K3X41_08605 PF01546 Peptidase family M20/M25/M40 K3X41_08610 PF01266 FAD dependent oxidoreductase K3X41_08625 PF02875 Mur ligase family, glutamate ligase domain K3X41_08625 PF08245 Mur ligase middle domain K3X41_08630 PF00953 Glycosyl transferase family 4 K3X41_08630 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 K3X41_08635 PF01225 Mur ligase family, catalytic domain K3X41_08635 PF02875 Mur ligase family, glutamate ligase domain K3X41_08635 PF08245 Mur ligase middle domain K3X41_08640 PF08245 Mur ligase middle domain K3X41_08640 PF01225 Mur ligase family, catalytic domain K3X41_08640 PF02875 Mur ligase family, glutamate ligase domain K3X41_08645 PF03717 Penicillin-binding Protein dimerisation domain K3X41_08645 PF00905 Penicillin binding protein transpeptidase domain K3X41_08655 PF01795 MraW methylase family K3X41_08660 PF02381 MraZ protein, putative antitoxin-like K3X41_08665 PF10609 NUBPL iron-transfer P-loop NTPase K3X41_08675 PF00580 UvrD/REP helicase N-terminal domain K3X41_08675 PF13361 UvrD-like helicase C-terminal domain K3X41_08680 PF01131 DNA topoisomerase K3X41_08680 PF01751 Toprim domain K3X41_08680 PF13368 Topoisomerase C-terminal repeat K3X41_08680 PF01396 Topoisomerase DNA binding C4 zinc finger K3X41_08680 PF01131 DNA topoisomerase K3X41_08680 PF01751 Toprim domain K3X41_08680 PF13368 Topoisomerase C-terminal repeat K3X41_08680 PF01396 Topoisomerase DNA binding C4 zinc finger K3X41_08685 PF02080 TrkA-C domain K3X41_08685 PF03600 Citrate transporter K3X41_08690 PF01144 Coenzyme A transferase K3X41_08705 PF01144 Coenzyme A transferase K3X41_08710 PF01209 ubiE/COQ5 methyltransferase family K3X41_08720 PF04030 D-arabinono-1,4-lactone oxidase K3X41_08720 PF01565 FAD binding domain K3X41_08725 PF00106 short chain dehydrogenase K3X41_08730 PF01040 UbiA prenyltransferase family K3X41_08760 PF13629 Pilus formation protein N terminal region K3X41_08760 PF00263 Bacterial type II and III secretion system protein K3X41_08760 PF04972 BON domain K3X41_08765 PF00691 OmpA family K3X41_08765 PF01389 OmpA-like transmembrane domain K3X41_08775 PF00437 Type II/IV secretion system protein K3X41_08815 PF00270 DEAD/DEAH box helicase K3X41_08815 PF08494 DEAD/H associated K3X41_08815 PF00271 Helicase conserved C-terminal domain K3X41_08830 PF00378 Enoyl-CoA hydratase/isomerase K3X41_08840 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain K3X41_08840 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain K3X41_08845 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain K3X41_08845 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain K3X41_08850 PF01268 Formate--tetrahydrofolate ligase K3X41_08855 PF00487 Fatty acid desaturase K3X41_08865 PF01434 Peptidase family M41 K3X41_08865 PF17862 AAA+ lid domain K3X41_08865 PF06480 FtsH Extracellular K3X41_08865 PF00004 ATPase family associated with various cellular activities (AAA) K3X41_08870 PF01171 PP-loop family K3X41_08880 PF00691 OmpA family K3X41_08885 PF07676 WD40-like Beta Propeller Repeat K3X41_08885 PF04052 TolB amino-terminal domain K3X41_08900 PF02472 Biopolymer transport protein ExbD/TolR K3X41_08905 PF01618 MotA/TolQ/ExbB proton channel family K3X41_08910 PF03061 Thioesterase superfamily K3X41_08930 PF17864 RuvB AAA lid domain K3X41_08930 PF05491 RuvB C-terminal winged helix domain K3X41_08930 PF05496 Holliday junction DNA helicase RuvB P-loop domain K3X41_08935 PF07499 RuvA, C-terminal domain K3X41_08935 PF01330 RuvA N terminal domain K3X41_08940 PF02075 Crossover junction endodeoxyribonuclease RuvC K3X41_08945 PF00890 FAD binding domain K3X41_08955 PF13180 PDZ domain K3X41_08955 PF17820 PDZ domain K3X41_08970 PF01145 SPFH domain / Band 7 family K3X41_08975 PF01145 SPFH domain / Band 7 family K3X41_08975 PF12221 Bacterial membrane protein N terminal K3X41_08980 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_08980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K3X41_08985 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) K3X41_08990 PF04304 Protein of unknown function (DUF454) K3X41_08995 PF03313 Serine dehydratase alpha chain K3X41_08995 PF03315 Serine dehydratase beta chain K3X41_09020 PF00709 Adenylosuccinate synthetase K3X41_09030 PF06418 CTP synthase N-terminus K3X41_09030 PF00117 Glutamine amidotransferase class-I K3X41_09050 PF00005 ABC transporter K3X41_09055 PF00497 Bacterial extracellular solute-binding proteins, family 3 K3X41_09060 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_09065 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_09070 PF00117 Glutamine amidotransferase class-I K3X41_09070 PF00958 GMP synthase C terminal domain K3X41_09070 PF02540 NAD synthase K3X41_09075 PF00120 Glutamine synthetase, catalytic domain K3X41_09080 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family K3X41_09085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_09085 PF03466 LysR substrate binding domain K3X41_09090 PF00753 Metallo-beta-lactamase superfamily K3X41_09090 PF13567 Domain of unknown function (DUF4131) K3X41_09090 PF03772 Competence protein K3X41_09095 PF00749 tRNA synthetases class I (E and Q), catalytic domain K3X41_09100 PF00285 Citrate synthase, C-terminal domain K3X41_09105 PF00378 Enoyl-CoA hydratase/isomerase K3X41_09110 PF03918 Cytochrome C biogenesis protein K3X41_09115 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K3X41_09115 PF01578 Cytochrome C assembly protein K3X41_09140 PF03100 CcmE K3X41_09145 PF01118 Semialdehyde dehydrogenase, NAD binding domain K3X41_09145 PF02774 Semialdehyde dehydrogenase, dimerisation domain K3X41_09150 PF01177 Asp/Glu/Hydantoin racemase K3X41_09160 PF03466 LysR substrate binding domain K3X41_09160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_09165 PF02769 AIR synthase related protein, C-terminal domain K3X41_09165 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain K3X41_09165 PF00586 AIR synthase related protein, N-terminal domain K3X41_09170 PF00805 Pentapeptide repeats (8 copies) K3X41_09180 PF00462 Glutaredoxin K3X41_09195 PF00456 Transketolase, thiamine diphosphate binding domain K3X41_09195 PF02779 Transketolase, pyrimidine binding domain K3X41_09195 PF02780 Transketolase, C-terminal domain K3X41_09200 PF00892 EamA-like transporter family K3X41_09205 PF05661 Protein of unknown function (DUF808) K3X41_09210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K3X41_09210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K3X41_09220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K3X41_09220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K3X41_09235 PF01467 Cytidylyltransferase-like K3X41_09245 PF03466 LysR substrate binding domain K3X41_09245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_09250 PF00171 Aldehyde dehydrogenase family K3X41_09265 PF04107 Glutamate-cysteine ligase family 2(GCS2) K3X41_09270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_09270 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_09270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_09275 PF00378 Enoyl-CoA hydratase/isomerase K3X41_09280 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K3X41_09280 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K3X41_09295 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_09300 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K3X41_09305 PF03480 Bacterial extracellular solute-binding protein, family 7 K3X41_09315 PF00158 Sigma-54 interaction domain K3X41_09315 PF02954 Bacterial regulatory protein, Fis family K3X41_09315 PF00072 Response regulator receiver domain K3X41_09320 PF00512 His Kinase A (phospho-acceptor) domain K3X41_09320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_09320 PF02743 Cache domain K3X41_09330 PF01037 Lrp/AsnC ligand binding domain K3X41_09340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K3X41_09340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K3X41_09345 PF01507 Phosphoadenosine phosphosulfate reductase family K3X41_09355 PF00175 Oxidoreductase NAD-binding domain K3X41_09355 PF00970 Oxidoreductase FAD-binding domain K3X41_09360 PF00707 Translation initiation factor IF-3, C-terminal domain K3X41_09360 PF05198 Translation initiation factor IF-3, N-terminal domain K3X41_09370 PF03458 UPF0126 domain K3X41_09375 PF02625 XdhC and CoxI family K3X41_09375 PF13478 XdhC Rossmann domain K3X41_09425 PF01979 Amidohydrolase family K3X41_09430 PF00156 Phosphoribosyl transferase domain K3X41_09435 PF03796 DnaB-like helicase C terminal domain K3X41_09435 PF00772 DnaB-like helicase N terminal domain K3X41_09440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K3X41_09455 PF10397 Adenylosuccinate lyase C-terminus K3X41_09455 PF00206 Lyase K3X41_09465 PF01706 FliG C-terminal domain K3X41_09465 PF14841 FliG middle domain K3X41_09465 PF14842 FliG N-terminal domain K3X41_09485 PF08534 Redoxin K3X41_09495 PF01578 Cytochrome C assembly protein K3X41_09500 PF03379 CcmB protein K3X41_09505 PF00005 ABC transporter K3X41_09510 PF04430 Protein of unknown function (DUF498/DUF598) K3X41_09520 PF02355 Protein export membrane protein K3X41_09525 PF02699 Preprotein translocase subunit K3X41_09535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K3X41_09535 PF02403 Seryl-tRNA synthetase N-terminal domain K3X41_09545 PF00902 Sec-independent protein translocase protein (TatC) K3X41_09550 PF02416 mttA/Hcf106 family K3X41_09555 PF02416 mttA/Hcf106 family K3X41_09565 PF00005 ABC transporter K3X41_09565 PF08402 TOBE domain K3X41_09575 PF00012 Hsp70 protein K3X41_09580 PF09334 tRNA synthetases class I (M) K3X41_09600 PF00696 Amino acid kinase family K3X41_09600 PF01842 ACT domain K3X41_09600 PF13840 ACT domain K3X41_09620 PF00291 Pyridoxal-phosphate dependent enzyme K3X41_09625 PF05524 PEP-utilising enzyme, N-terminal K3X41_09625 PF00391 PEP-utilising enzyme, mobile domain K3X41_09625 PF02896 PEP-utilising enzyme, TIM barrel domain K3X41_09640 PF00916 Sulfate permease family K3X41_09640 PF01740 STAS domain K3X41_09645 PF01048 Phosphorylase superfamily K3X41_09650 PF04235 Protein of unknown function (DUF418) K3X41_09655 PF00156 Phosphoribosyl transferase domain K3X41_09660 PF01565 FAD binding domain K3X41_09660 PF02913 FAD linked oxidases, C-terminal domain K3X41_09670 PF00675 Insulinase (Peptidase family M16) K3X41_09670 PF05193 Peptidase M16 inactive domain K3X41_09675 PF14821 Threonine synthase N terminus K3X41_09675 PF00291 Pyridoxal-phosphate dependent enzyme K3X41_09685 PF00510 Cytochrome c oxidase subunit III K3X41_09690 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 K3X41_09700 PF01040 UbiA prenyltransferase family K3X41_09705 PF02790 Cytochrome C oxidase subunit II, transmembrane domain K3X41_09705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain K3X41_09710 PF01523 Putative modulator of DNA gyrase K3X41_09725 PF02481 DNA recombination-mediator protein A K3X41_09730 PF00364 Biotin-requiring enzyme K3X41_09730 PF00289 Biotin carboxylase, N-terminal domain K3X41_09730 PF02436 Conserved carboxylase domain K3X41_09730 PF02785 Biotin carboxylase C-terminal domain K3X41_09730 PF00682 HMGL-like K3X41_09730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3X41_09750 PF01381 Helix-turn-helix K3X41_09760 PF00475 Imidazoleglycerol-phosphate dehydratase K3X41_09770 PF00117 Glutamine amidotransferase class-I K3X41_09780 PF00977 Histidine biosynthesis protein K3X41_09790 PF00977 Histidine biosynthesis protein K3X41_09795 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase K3X41_09810 PF08032 RNA 2'-O ribose methyltransferase substrate binding K3X41_09810 PF00588 SpoU rRNA Methylase family K3X41_09825 PF00005 ABC transporter K3X41_09825 PF10649 Protein of unknown function (DUF2478) K3X41_09825 PF03459 TOBE domain K3X41_09830 PF03264 NapC/NirT cytochrome c family, N-terminal region K3X41_09835 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) K3X41_09840 PF12801 4Fe-4S binding domain K3X41_09840 PF13237 4Fe-4S dicluster domain K3X41_09845 PF12838 4Fe-4S dicluster domain K3X41_09845 PF12800 4Fe-4S binding domain K3X41_09850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K3X41_09850 PF00384 Molybdopterin oxidoreductase K3X41_09850 PF01568 Molydopterin dinucleotide binding domain K3X41_09860 PF00037 4Fe-4S binding domain K3X41_09860 PF12838 4Fe-4S dicluster domain K3X41_09960 PF00589 Phage integrase family K3X41_09970 PF03884 DNA gyrase inhibitor YacG K3X41_09975 PF00575 S1 RNA binding domain K3X41_09975 PF10150 Ribonuclease E/G family K3X41_09980 PF02545 Maf-like protein K3X41_09985 PF01176 Translation initiation factor 1A / IF-1 K3X41_09990 PF00795 Carbon-nitrogen hydrolase K3X41_10010 PF06793 Uncharacterised protein family (UPF0262) K3X41_10015 PF00815 Histidinol dehydrogenase K3X41_10025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K3X41_10045 PF00765 Autoinducer synthase K3X41_10055 PF00501 AMP-binding enzyme K3X41_10055 PF13193 AMP-binding enzyme C-terminal domain K3X41_10060 PF00664 ABC transporter transmembrane region K3X41_10060 PF00005 ABC transporter K3X41_10065 PF01170 Putative RNA methylase family UPF0020 K3X41_10065 PF02926 THUMP domain K3X41_10065 PF10672 S-adenosylmethionine-dependent methyltransferase K3X41_10070 PF02627 Carboxymuconolactone decarboxylase family K3X41_10075 PF07702 UTRA domain K3X41_10075 PF00392 Bacterial regulatory proteins, gntR family K3X41_10085 PF12697 Alpha/beta hydrolase family K3X41_10090 PF01613 Flavin reductase like domain K3X41_10095 PF00296 Luciferase-like monooxygenase K3X41_10100 PF00171 Aldehyde dehydrogenase family K3X41_10120 PF01136 Peptidase family U32 K3X41_10130 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K3X41_10135 PF02441 Flavoprotein K3X41_10150 PF07556 Protein of unknown function (DUF1538) K3X41_10155 PF07556 Protein of unknown function (DUF1538) K3X41_10160 PF00111 2Fe-2S iron-sulfur cluster binding domain K3X41_10160 PF00175 Oxidoreductase NAD-binding domain K3X41_10160 PF00970 Oxidoreductase FAD-binding domain K3X41_10165 PF02508 Rnf-Nqr subunit, membrane protein K3X41_10170 PF02508 Rnf-Nqr subunit, membrane protein K3X41_10175 PF04205 FMN-binding domain K3X41_10180 PF03116 NQR2, RnfD, RnfE family K3X41_10185 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) K3X41_10185 PF11973 NQRA C-terminal domain K3X41_10190 PF02424 ApbE family K3X41_10205 PF00571 CBS domain K3X41_10205 PF00478 IMP dehydrogenase / GMP reductase domain K3X41_10215 PF03099 Biotin/lipoate A/B protein ligase family K3X41_10225 PF00115 Cytochrome C and Quinol oxidase polypeptide I K3X41_10240 PF00117 Glutamine amidotransferase class-I K3X41_10240 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain K3X41_10250 PF07729 FCD domain K3X41_10250 PF00392 Bacterial regulatory proteins, gntR family K3X41_10285 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain K3X41_10285 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain K3X41_10295 PF00892 EamA-like transporter family K3X41_10300 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K3X41_10300 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K3X41_10300 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K3X41_10300 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K3X41_10305 PF00809 Pterin binding enzyme K3X41_10320 PF00391 PEP-utilising enzyme, mobile domain K3X41_10320 PF02896 PEP-utilising enzyme, TIM barrel domain K3X41_10320 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K3X41_10325 PF05746 DALR anticodon binding domain K3X41_10325 PF02092 Glycyl-tRNA synthetase beta subunit K3X41_10335 PF02091 Glycyl-tRNA synthetase alpha subunit K3X41_10345 PF00205 Thiamine pyrophosphate enzyme, central domain K3X41_10345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3X41_10345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3X41_10350 PF02386 Cation transport protein K3X41_10360 PF02649 Type I GTP cyclohydrolase folE2 K3X41_10365 PF01053 Cys/Met metabolism PLP-dependent enzyme K3X41_10370 PF04279 Intracellular septation protein A K3X41_10380 PF00448 SRP54-type protein, GTPase domain K3X41_10380 PF02881 SRP54-type protein, helical bundle domain K3X41_10395 PF10531 SLBB domain K3X41_10395 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit K3X41_10395 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K3X41_10400 PF00487 Fatty acid desaturase K3X41_10410 PF05816 Toxic anion resistance protein (TelA) K3X41_10435 PF02580 D-Tyr-tRNA(Tyr) deacylase K3X41_10445 PF02153 Prephenate dehydrogenase K3X41_10450 PF00155 Aminotransferase class I and II K3X41_10460 PF00163 Ribosomal protein S4/S9 N-terminal domain K3X41_10460 PF01479 S4 domain K3X41_10480 PF00950 ABC 3 transport family K3X41_10485 PF00005 ABC transporter K3X41_10495 PF01297 Zinc-uptake complex component A periplasmic K3X41_10510 PF00196 Bacterial regulatory proteins, luxR family K3X41_10510 PF00072 Response regulator receiver domain K3X41_10520 PF00005 ABC transporter K3X41_10520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3X41_10525 PF00005 ABC transporter K3X41_10525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3X41_10530 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_10535 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_10540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3X41_10550 PF12833 Helix-turn-helix domain K3X41_10550 PF02311 AraC-like ligand binding domain K3X41_10555 PF02538 Hydantoinase B/oxoprolinase K3X41_10560 PF05378 Hydantoinase/oxoprolinase N-terminal region K3X41_10560 PF01968 Hydantoinase/oxoprolinase K3X41_10565 PF00005 ABC transporter K3X41_10565 PF12399 Branched-chain amino acid ATP-binding cassette transporter K3X41_10570 PF00005 ABC transporter K3X41_10575 PF02653 Branched-chain amino acid transport system / permease component K3X41_10580 PF02653 Branched-chain amino acid transport system / permease component K3X41_10590 PF03477 ATP cone domain K3X41_10590 PF00317 Ribonucleotide reductase, all-alpha domain K3X41_10590 PF02867 Ribonucleotide reductase, barrel domain K3X41_10600 PF01063 Amino-transferase class IV K3X41_10615 PF02080 TrkA-C domain K3X41_10615 PF03600 Citrate transporter K3X41_10625 PF13277 YmdB-like protein K3X41_10630 PF01106 NifU-like domain K3X41_10635 PF00814 Glycoprotease family K3X41_10645 PF02608 ABC transporter substrate-binding protein PnrA-like K3X41_10650 PF00005 ABC transporter K3X41_10655 PF02653 Branched-chain amino acid transport system / permease component K3X41_10660 PF02653 Branched-chain amino acid transport system / permease component K3X41_10665 PF01048 Phosphorylase superfamily K3X41_10670 PF01925 Sulfite exporter TauE/SafE K3X41_10690 PF00765 Autoinducer synthase K3X41_10705 PF08240 Alcohol dehydrogenase GroES-like domain K3X41_10705 PF00107 Zinc-binding dehydrogenase K3X41_10710 PF01553 Acyltransferase K3X41_10715 PF01642 Methylmalonyl-CoA mutase K3X41_10715 PF02310 B12 binding domain K3X41_10725 PF01048 Phosphorylase superfamily K3X41_10740 PF00005 ABC transporter K3X41_10740 PF03459 TOBE domain K3X41_10740 PF10649 Protein of unknown function (DUF2478) K3X41_10745 PF00873 AcrB/AcrD/AcrF family K3X41_10755 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K3X41_10755 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K3X41_10760 PF00171 Aldehyde dehydrogenase family K3X41_10765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_10765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_10765 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_10770 PF00202 Aminotransferase class-III K3X41_10775 PF06114 IrrE N-terminal-like domain K3X41_10775 PF09856 Predicted transcriptional regulator (DUF2083) K3X41_10775 PF01381 Helix-turn-helix K3X41_10780 PF02515 CoA-transferase family III K3X41_10785 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_10800 PF02798 Glutathione S-transferase, N-terminal domain K3X41_10805 PF00072 Response regulator receiver domain K3X41_10805 PF13188 PAS domain K3X41_10805 PF08448 PAS fold K3X41_10805 PF00512 His Kinase A (phospho-acceptor) domain K3X41_10805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_10810 PF00072 Response regulator receiver domain K3X41_10875 PF04264 YceI-like domain K3X41_10885 PF06071 Protein of unknown function (DUF933) K3X41_10885 PF01926 50S ribosome-binding GTPase K3X41_10895 PF00290 Tryptophan synthase alpha chain K3X41_10900 PF01070 FMN-dependent dehydrogenase K3X41_10910 PF00270 DEAD/DEAH box helicase K3X41_10910 PF00271 Helicase conserved C-terminal domain K3X41_10925 PF01386 Ribosomal L25p family K3X41_10925 PF14693 Ribosomal protein TL5, C-terminal domain K3X41_10935 PF01195 Peptidyl-tRNA hydrolase K3X41_10950 PF00291 Pyridoxal-phosphate dependent enzyme K3X41_10955 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K3X41_10965 PF00216 Bacterial DNA-binding protein K3X41_10970 PF00575 S1 RNA binding domain K3X41_10980 PF02224 Cytidylate kinase K3X41_11000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K3X41_11005 PF02390 Putative methyltransferase K3X41_11010 PF00438 S-adenosylmethionine synthetase, N-terminal domain K3X41_11010 PF02772 S-adenosylmethionine synthetase, central domain K3X41_11010 PF02773 S-adenosylmethionine synthetase, C-terminal domain K3X41_11015 PF00795 Carbon-nitrogen hydrolase K3X41_11020 PF03471 Transporter associated domain K3X41_11020 PF00571 CBS domain K3X41_11025 PF02130 Uncharacterized protein family UPF0054 K3X41_11030 PF02562 PhoH-like protein K3X41_11045 PF04055 Radical SAM superfamily K3X41_11045 PF01938 TRAM domain K3X41_11045 PF00919 Uncharacterized protein family UPF0004 K3X41_11055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K3X41_11060 PF01475 Ferric uptake regulator family K3X41_11065 PF07977 FabA-like domain K3X41_11070 PF00109 Beta-ketoacyl synthase, N-terminal domain K3X41_11070 PF02801 Beta-ketoacyl synthase, C-terminal domain K3X41_11080 PF00561 alpha/beta hydrolase fold K3X41_11085 PF00291 Pyridoxal-phosphate dependent enzyme K3X41_11095 PF00561 alpha/beta hydrolase fold K3X41_11095 PF08386 TAP-like protein K3X41_11100 PF08240 Alcohol dehydrogenase GroES-like domain K3X41_11100 PF00107 Zinc-binding dehydrogenase K3X41_11105 PF00977 Histidine biosynthesis protein K3X41_11110 PF09278 MerR, DNA binding K3X41_11110 PF00376 MerR family regulatory protein K3X41_11115 PF00873 AcrB/AcrD/AcrF family K3X41_11120 PF13533 Biotin-lipoyl like K3X41_11140 PF03831 PhnA domain K3X41_11140 PF08274 PhnA Zinc-Ribbon K3X41_11155 PF03144 Elongation factor Tu domain 2 K3X41_11155 PF00679 Elongation factor G C-terminus K3X41_11155 PF00009 Elongation factor Tu GTP binding domain K3X41_11155 PF06421 GTP-binding protein LepA C-terminus K3X41_11165 PF01037 Lrp/AsnC ligand binding domain K3X41_11170 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K3X41_11170 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K3X41_11175 PF00294 pfkB family carbohydrate kinase K3X41_11185 PF01451 Low molecular weight phosphotyrosine protein phosphatase K3X41_11190 PF01638 HxlR-like helix-turn-helix K3X41_11195 PF02146 Sir2 family K3X41_11210 PF00830 Ribosomal L28 family K3X41_11220 PF00005 ABC transporter K3X41_11220 PF00664 ABC transporter transmembrane region K3X41_11230 PF04408 Helicase associated domain (HA2) K3X41_11230 PF00271 Helicase conserved C-terminal domain K3X41_11230 PF08482 ATP-dependent helicase C-terminal K3X41_11230 PF00270 DEAD/DEAH box helicase K3X41_11240 PF01384 Phosphate transporter family K3X41_11250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K3X41_11250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K3X41_11255 PF00202 Aminotransferase class-III K3X41_11275 PF04055 Radical SAM superfamily K3X41_11275 PF18693 TRAM domain K3X41_11275 PF00919 Uncharacterized protein family UPF0004 K3X41_11290 PF02142 MGS-like domain K3X41_11290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3X41_11290 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K3X41_11295 PF00425 chorismate binding enzyme K3X41_11295 PF00117 Glutamine amidotransferase class-I K3X41_11295 PF04715 Anthranilate synthase component I, N terminal region K3X41_11305 PF02938 GAD domain K3X41_11305 PF00152 tRNA synthetases class II (D, K and N) K3X41_11305 PF01336 OB-fold nucleic acid binding domain K3X41_11315 PF00072 Response regulator receiver domain K3X41_11315 PF00486 Transcriptional regulatory protein, C terminal K3X41_11340 PF00881 Nitroreductase family K3X41_11345 PF00850 Histone deacetylase domain K3X41_11350 PF02594 Uncharacterised ACR, YggU family COG1872 K3X41_11355 PF05656 Protein of unknown function (DUF805) K3X41_11360 PF02660 Glycerol-3-phosphate acyltransferase K3X41_11365 PF01979 Amidohydrolase family K3X41_11390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K3X41_11390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K3X41_11405 PF03167 Uracil DNA glycosylase superfamily K3X41_11410 PF00994 Probable molybdopterin binding domain K3X41_11420 PF00873 AcrB/AcrD/AcrF family K3X41_11430 PF03449 Transcription elongation factor, N-terminal K3X41_11430 PF01272 Transcription elongation factor, GreA/GreB, C-term K3X41_11450 PF08544 GHMP kinases C terminal K3X41_11455 PF00348 Polyprenyl synthetase K3X41_11480 PF03466 LysR substrate binding domain K3X41_11480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_11490 PF02803 Thiolase, C-terminal domain K3X41_11490 PF00108 Thiolase, N-terminal domain K3X41_11495 PF00563 EAL domain K3X41_11495 PF00990 Diguanylate cyclase, GGDEF domain K3X41_11495 PF03707 Bacterial signalling protein N terminal repeat K3X41_11500 PF03352 Methyladenine glycosylase K3X41_11505 PF13406 Transglycosylase SLT domain K3X41_11510 PF04116 Fatty acid hydroxylase superfamily K3X41_11520 PF08534 Redoxin K3X41_11525 PF14698 Argininosuccinate lyase C-terminal K3X41_11525 PF00206 Lyase K3X41_11530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K3X41_11530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K3X41_11540 PF13662 Toprim domain K3X41_11540 PF02132 RecR protein K3X41_11545 PF02575 YbaB/EbfC DNA-binding family K3X41_11550 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding K3X41_11550 PF12170 DNA polymerase III tau subunit V interacting with alpha K3X41_11550 PF12169 DNA polymerase III subunits gamma and tau domain III K3X41_11565 PF03193 RsgA GTPase K3X41_11575 PF02872 5'-nucleotidase, C-terminal domain K3X41_11575 PF00149 Calcineurin-like phosphoesterase K3X41_11580 PF00293 NUDIX domain K3X41_11580 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain K3X41_11580 PF09297 NADH pyrophosphatase zinc ribbon domain K3X41_11590 PF00800 Prephenate dehydratase K3X41_11590 PF01842 ACT domain K3X41_11590 PF01817 Chorismate mutase type II K3X41_11595 PF00034 Cytochrome c K3X41_11600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3X41_11605 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_11610 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_11610 PF12911 N-terminal TM domain of oligopeptide transport permease C K3X41_11615 PF00005 ABC transporter K3X41_11615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3X41_11620 PF00768 D-alanyl-D-alanine carboxypeptidase K3X41_11620 PF07943 Penicillin-binding protein 5, C-terminal domain K3X41_11625 PF02617 ATP-dependent Clp protease adaptor protein ClpS K3X41_11630 PF05175 Methyltransferase small domain K3X41_11630 PF08468 Methyltransferase small domain N-terminal K3X41_11640 PF01218 Coproporphyrinogen III oxidase K3X41_11650 PF01047 MarR family K3X41_11655 PF00108 Thiolase, N-terminal domain K3X41_11655 PF02803 Thiolase, C-terminal domain K3X41_11660 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain K3X41_11660 PF03900 Porphobilinogen deaminase, C-terminal domain K3X41_11665 PF01208 Uroporphyrinogen decarboxylase (URO-D) K3X41_11675 PF00270 DEAD/DEAH box helicase K3X41_11675 PF00271 Helicase conserved C-terminal domain K3X41_11680 PF02774 Semialdehyde dehydrogenase, dimerisation domain K3X41_11680 PF01118 Semialdehyde dehydrogenase, NAD binding domain K3X41_11695 PF00484 Carbonic anhydrase K3X41_11705 PF00883 Cytosol aminopeptidase family, catalytic domain K3X41_11705 PF02789 Cytosol aminopeptidase family, N-terminal domain K3X41_11710 PF00877 NlpC/P60 family K3X41_11720 PF03061 Thioesterase superfamily K3X41_11725 PF00501 AMP-binding enzyme K3X41_11725 PF14535 AMP-binding enzyme C-terminal domain K3X41_11735 PF01322 Cytochrome C' K3X41_11745 PF08240 Alcohol dehydrogenase GroES-like domain K3X41_11745 PF00107 Zinc-binding dehydrogenase K3X41_11760 PF03547 Membrane transport protein K3X41_11770 PF00756 Putative esterase K3X41_11775 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 K3X41_11785 PF01810 LysE type translocator K3X41_11790 PF00581 Rhodanese-like domain K3X41_11795 PF00155 Aminotransferase class I and II K3X41_11805 PF00909 Ammonium Transporter Family K3X41_11810 PF00543 Nitrogen regulatory protein P-II K3X41_11815 PF17092 Penicillin-binding protein OB-like domain K3X41_11815 PF00912 Transglycosylase K3X41_11815 PF00905 Penicillin binding protein transpeptidase domain K3X41_11835 PF00005 ABC transporter K3X41_11835 PF00664 ABC transporter transmembrane region K3X41_11840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K3X41_11840 PF00529 HlyD membrane-fusion protein of T1SS K3X41_11850 PF03009 Glycerophosphoryl diester phosphodiesterase family K3X41_11860 PF01329 Pterin 4 alpha carbinolamine dehydratase K3X41_11865 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_11865 PF14759 Reductase C-terminal K3X41_11875 PF00557 Metallopeptidase family M24 K3X41_11880 PF17746 SfsA N-terminal OB domain K3X41_11880 PF03749 Sugar fermentation stimulation protein RE domain K3X41_11885 PF02464 Competence-damaged protein K3X41_11885 PF18146 Damage-inducible protein CinA KH domain K3X41_11885 PF00994 Probable molybdopterin binding domain K3X41_11900 PF00691 OmpA family K3X41_11900 PF05736 OprF membrane domain K3X41_11905 PF03466 LysR substrate binding domain K3X41_11905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_11915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K3X41_11915 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_11940 PF02517 CPBP intramembrane metalloprotease K3X41_11945 PF01039 Carboxyl transferase domain K3X41_11945 PF17848 Acetyl-coA carboxylase zinc finger domain K3X41_11950 PF08245 Mur ligase middle domain K3X41_11950 PF02875 Mur ligase family, glutamate ligase domain K3X41_11960 PF00756 Putative esterase K3X41_11960 PF01476 LysM domain K3X41_11965 PF03969 AFG1-like ATPase K3X41_11975 PF01037 Lrp/AsnC ligand binding domain K3X41_11980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K3X41_11980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K3X41_11990 PF00924 Mechanosensitive ion channel K3X41_11990 PF05552 Conserved TM helix K3X41_11995 PF01741 Large-conductance mechanosensitive channel, MscL K3X41_12000 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ K3X41_12005 PF03483 B3/4 domain K3X41_12005 PF03147 Ferredoxin-fold anticodon binding domain K3X41_12005 PF01588 Putative tRNA binding domain K3X41_12005 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain K3X41_12005 PF03484 tRNA synthetase B5 domain K3X41_12025 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain K3X41_12025 PF01409 tRNA synthetases class II core domain (F) K3X41_12030 PF04542 Sigma-70 region 2 K3X41_12030 PF04545 Sigma-70, region 4 K3X41_12035 PF03795 YCII-related domain K3X41_12045 PF00453 Ribosomal protein L20 K3X41_12050 PF01632 Ribosomal protein L35 K3X41_12060 PF00224 Pyruvate kinase, barrel domain K3X41_12060 PF02887 Pyruvate kinase, alpha/beta domain K3X41_12085 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase K3X41_12090 PF01063 Amino-transferase class IV K3X41_12100 PF13378 Enolase C-terminal domain-like K3X41_12100 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain K3X41_12115 PF03328 HpcH/HpaI aldolase/citrate lyase family K3X41_12130 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit K3X41_12150 PF00005 ABC transporter K3X41_12185 PF01794 Ferric reductase like transmembrane component K3X41_12190 PF00174 Oxidoreductase molybdopterin binding domain K3X41_12200 PF01966 HD domain K3X41_12200 PF13286 Phosphohydrolase-associated domain K3X41_12205 PF10431 C-terminal, D2-small domain, of ClpB protein K3X41_12205 PF00004 ATPase family associated with various cellular activities (AAA) K3X41_12205 PF07724 AAA domain (Cdc48 subfamily) K3X41_12205 PF17871 AAA lid domain K3X41_12205 PF02861 Clp amino terminal domain, pathogenicity island component K3X41_12215 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family K3X41_12230 PF01145 SPFH domain / Band 7 family K3X41_12235 PF11799 impB/mucB/samB family C-terminal domain K3X41_12235 PF00817 impB/mucB/samB family K3X41_12250 PF00444 Ribosomal protein L36 K3X41_12255 PF03466 LysR substrate binding domain K3X41_12255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_12265 PF00501 AMP-binding enzyme K3X41_12265 PF14535 AMP-binding enzyme C-terminal domain K3X41_12270 PF00005 ABC transporter K3X41_12285 PF02653 Branched-chain amino acid transport system / permease component K3X41_12290 PF00005 ABC transporter K3X41_12290 PF12399 Branched-chain amino acid ATP-binding cassette transporter K3X41_12295 PF00501 AMP-binding enzyme K3X41_12300 PF00512 His Kinase A (phospho-acceptor) domain K3X41_12300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_12305 PF00486 Transcriptional regulatory protein, C terminal K3X41_12305 PF00072 Response regulator receiver domain K3X41_12315 PF12838 4Fe-4S dicluster domain K3X41_12315 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K3X41_12315 PF00384 Molybdopterin oxidoreductase K3X41_12315 PF01568 Molydopterin dinucleotide binding domain K3X41_12315 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K3X41_12350 PF02646 RmuC family K3X41_12355 PF01119 DNA mismatch repair protein, C-terminal domain K3X41_12355 PF08676 MutL C terminal dimerisation domain K3X41_12360 PF05193 Peptidase M16 inactive domain K3X41_12365 PF05193 Peptidase M16 inactive domain K3X41_12365 PF00675 Insulinase (Peptidase family M16) K3X41_12375 PF01252 Signal peptidase (SPase) II K3X41_12380 PF01808 AICARFT/IMPCHase bienzyme K3X41_12380 PF02142 MGS-like domain K3X41_12385 PF07940 Heparinase II/III-like protein K3X41_12390 PF01189 16S rRNA methyltransferase RsmB/F K3X41_12390 PF01029 NusB family K3X41_12400 PF01113 Dihydrodipicolinate reductase, N-terminus K3X41_12400 PF05173 Dihydrodipicolinate reductase, C-terminus K3X41_12405 PF02033 Ribosome-binding factor A K3X41_12410 PF16198 tRNA pseudouridylate synthase B C-terminal domain K3X41_12410 PF01509 TruB family pseudouridylate synthase (N terminal domain) K3X41_12415 PF02885 Glycosyl transferase family, helical bundle domain K3X41_12415 PF00591 Glycosyl transferase family, a/b domain K3X41_12415 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain K3X41_12435 PF00312 Ribosomal protein S15 K3X41_12445 PF00013 KH domain K3X41_12445 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain K3X41_12445 PF01138 3' exoribonuclease family, domain 1 K3X41_12445 PF03725 3' exoribonuclease family, domain 2 K3X41_12445 PF00575 S1 RNA binding domain K3X41_12465 PF01638 HxlR-like helix-turn-helix K3X41_12475 PF00230 Major intrinsic protein K3X41_12480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K3X41_12480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3X41_12480 PF01842 ACT domain K3X41_12490 PF18429 Domain of unknown function (DUF5609) K3X41_12495 PF00885 6,7-dimethyl-8-ribityllumazine synthase K3X41_12500 PF01925 Sulfite exporter TauE/SafE K3X41_12515 PF04055 Radical SAM superfamily K3X41_12545 PF00291 Pyridoxal-phosphate dependent enzyme K3X41_12550 PF00132 Bacterial transferase hexapeptide (six repeats) K3X41_12550 PF14602 Hexapeptide repeat of succinyl-transferase K3X41_12550 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal K3X41_12570 PF13419 Haloacid dehalogenase-like hydrolase K3X41_12590 PF07687 Peptidase dimerisation domain K3X41_12590 PF01546 Peptidase family M20/M25/M40 K3X41_12595 PF08206 Ribonuclease B OB domain K3X41_12595 PF00575 S1 RNA binding domain K3X41_12595 PF08461 Ribonuclease R winged-helix domain K3X41_12595 PF17876 Cold shock domain K3X41_12595 PF00773 RNB domain K3X41_12600 PF13406 Transglycosylase SLT domain K3X41_12610 PF00834 Ribulose-phosphate 3 epimerase family K3X41_12620 PF00293 NUDIX domain K3X41_12625 PF03572 Peptidase family S41 K3X41_12625 PF13180 PDZ domain K3X41_12630 PF01551 Peptidase family M23 K3X41_12635 PF06415 BPG-independent PGAM N-terminus (iPGM_N) K3X41_12635 PF01676 Metalloenzyme superfamily K3X41_12645 PF02590 Predicted SPOUT methyltransferase K3X41_12660 PF12795 Mechanosensitive ion channel porin domain K3X41_12660 PF12794 Mechanosensitive ion channel inner membrane domain 1 K3X41_12660 PF00924 Mechanosensitive ion channel K3X41_12665 PF00330 Aconitase family (aconitate hydratase) K3X41_12670 PF00694 Aconitase C-terminal domain K3X41_12685 PF00180 Isocitrate/isopropylmalate dehydrogenase K3X41_12700 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_12700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_12700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_12705 PF03992 Antibiotic biosynthesis monooxygenase K3X41_12715 PF00860 Permease family K3X41_12720 PF01565 FAD binding domain K3X41_12720 PF09330 D-lactate dehydrogenase, membrane binding K3X41_12725 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_12730 PF03480 Bacterial extracellular solute-binding protein, family 7 K3X41_12735 PF07729 FCD domain K3X41_12735 PF00392 Bacterial regulatory proteins, gntR family K3X41_12750 PF02627 Carboxymuconolactone decarboxylase family K3X41_12755 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_12760 PF00005 ABC transporter K3X41_12765 PF00497 Bacterial extracellular solute-binding proteins, family 3 K3X41_12770 PF01321 Creatinase/Prolidase N-terminal domain K3X41_12770 PF00557 Metallopeptidase family M24 K3X41_12775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3X41_12775 PF00005 ABC transporter K3X41_12780 PF00005 ABC transporter K3X41_12780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3X41_12785 PF12911 N-terminal TM domain of oligopeptide transport permease C K3X41_12785 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_12790 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_12795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3X41_12800 PF07729 FCD domain K3X41_12800 PF00392 Bacterial regulatory proteins, gntR family K3X41_12820 PF01557 Fumarylacetoacetate (FAA) hydrolase family K3X41_12825 PF06415 BPG-independent PGAM N-terminus (iPGM_N) K3X41_12825 PF01676 Metalloenzyme superfamily K3X41_12830 PF00005 ABC transporter K3X41_12830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3X41_12835 PF12911 N-terminal TM domain of oligopeptide transport permease C K3X41_12835 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_12840 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_12845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3X41_12850 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_12860 PF03480 Bacterial extracellular solute-binding protein, family 7 K3X41_12870 PF13533 Biotin-lipoyl like K3X41_12875 PF00873 AcrB/AcrD/AcrF family K3X41_12880 PF01758 Sodium Bile acid symporter family K3X41_12885 PF02782 FGGY family of carbohydrate kinases, C-terminal domain K3X41_12885 PF00370 FGGY family of carbohydrate kinases, N-terminal domain K3X41_12890 PF16901 C-terminal domain of alpha-glycerophosphate oxidase K3X41_12890 PF01266 FAD dependent oxidoreductase K3X41_12895 PF08220 DeoR-like helix-turn-helix domain K3X41_12895 PF00455 DeoR C terminal sensor domain K3X41_12900 PF13419 Haloacid dehalogenase-like hydrolase K3X41_12905 PF03707 Bacterial signalling protein N terminal repeat K3X41_12905 PF00990 Diguanylate cyclase, GGDEF domain K3X41_12905 PF00563 EAL domain K3X41_12910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3X41_12915 PF03264 NapC/NirT cytochrome c family, N-terminal region K3X41_12925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3X41_12930 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3X41_12940 PF13404 AsnC-type helix-turn-helix domain K3X41_12940 PF17805 AsnC-like ligand binding domain K3X41_12945 PF17805 AsnC-like ligand binding domain K3X41_12945 PF13404 AsnC-type helix-turn-helix domain K3X41_12950 PF17805 AsnC-like ligand binding domain K3X41_12950 PF13404 AsnC-type helix-turn-helix domain K3X41_12955 PF13186 Iron-sulfur cluster-binding domain K3X41_12955 PF04055 Radical SAM superfamily K3X41_12970 PF00196 Bacterial regulatory proteins, luxR family K3X41_12970 PF00072 Response regulator receiver domain K3X41_12980 PF00378 Enoyl-CoA hydratase/isomerase K3X41_13000 PF01312 FlhB HrpN YscU SpaS Family K3X41_13010 PF00771 FHIPEP family K3X41_13025 PF01618 MotA/TolQ/ExbB proton channel family K3X41_13045 PF08345 Flagellar M-ring protein C-terminal K3X41_13045 PF01514 Secretory protein of YscJ/FliF family K3X41_13055 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K3X41_13060 PF00813 FliP family K3X41_13065 PF13378 Enolase C-terminal domain-like K3X41_13065 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain K3X41_13070 PF05199 GMC oxidoreductase K3X41_13070 PF00732 GMC oxidoreductase K3X41_13075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_13075 PF03466 LysR substrate binding domain K3X41_13080 PF16177 Acetyl-coenzyme A synthetase N-terminus K3X41_13080 PF13193 AMP-binding enzyme C-terminal domain K3X41_13080 PF00501 AMP-binding enzyme K3X41_13085 PF05191 Adenylate kinase, active site lid K3X41_13095 PF00474 Sodium:solute symporter family K3X41_13100 PF00571 CBS domain K3X41_13100 PF01743 Poly A polymerase head domain K3X41_13110 PF00929 Exonuclease K3X41_13115 PF00384 Molybdopterin oxidoreductase K3X41_13115 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K3X41_13115 PF01568 Molydopterin dinucleotide binding domain K3X41_13120 PF00155 Aminotransferase class I and II K3X41_13120 PF00392 Bacterial regulatory proteins, gntR family K3X41_13165 PF00892 EamA-like transporter family K3X41_13170 PF16350 FAD dependent oxidoreductase central domain K3X41_13170 PF01571 Aminomethyltransferase folate-binding domain K3X41_13170 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3X41_13170 PF01266 FAD dependent oxidoreductase K3X41_13180 PF16350 FAD dependent oxidoreductase central domain K3X41_13180 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3X41_13180 PF01571 Aminomethyltransferase folate-binding domain K3X41_13180 PF01266 FAD dependent oxidoreductase K3X41_13185 PF01810 LysE type translocator K3X41_13205 PF02803 Thiolase, C-terminal domain K3X41_13205 PF00108 Thiolase, N-terminal domain K3X41_13245 PF13491 4TM region of DNA translocase FtsK/SpoIIIE K3X41_13245 PF17854 FtsK alpha domain K3X41_13245 PF09397 Ftsk gamma domain K3X41_13245 PF01580 FtsK/SpoIIIE family K3X41_13265 PF01425 Amidase K3X41_13270 PF01494 FAD binding domain K3X41_13280 PF03966 Trm112p-like protein K3X41_13290 PF00085 Thioredoxin K3X41_13295 PF03372 Endonuclease/Exonuclease/phosphatase family K3X41_13305 PF00376 MerR family regulatory protein K3X41_13305 PF09278 MerR, DNA binding K3X41_13315 PF00583 Acetyltransferase (GNAT) family K3X41_13320 PF00486 Transcriptional regulatory protein, C terminal K3X41_13320 PF00072 Response regulator receiver domain K3X41_13325 PF00925 GTP cyclohydrolase II K3X41_13335 PF01168 Alanine racemase, N-terminal domain K3X41_13345 PF12100 Domain of unknown function (DUF3576) K3X41_13355 PF13603 Leucyl-tRNA synthetase, Domain 2 K3X41_13355 PF08264 Anticodon-binding domain of tRNA K3X41_13355 PF00133 tRNA synthetases class I (I, L, M and V) K3X41_13355 PF09334 tRNA synthetases class I (M) K3X41_13370 PF01266 FAD dependent oxidoreductase K3X41_13370 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K3X41_13375 PF00924 Mechanosensitive ion channel K3X41_13375 PF12795 Mechanosensitive ion channel porin domain K3X41_13375 PF12794 Mechanosensitive ion channel inner membrane domain 1 K3X41_13380 PF00378 Enoyl-CoA hydratase/isomerase K3X41_13385 PF00106 short chain dehydrogenase K3X41_13390 PF01523 Putative modulator of DNA gyrase K3X41_13395 PF00459 Inositol monophosphatase family K3X41_13400 PF00356 Bacterial regulatory proteins, lacI family K3X41_13400 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K3X41_13410 PF13614 AAA domain K3X41_13410 PF13807 G-rich domain on putative tyrosine kinase K3X41_13410 PF02706 Chain length determinant protein K3X41_13420 PF02563 Polysaccharide biosynthesis/export protein K3X41_13420 PF18412 Outer-membrane lipoprotein Wza C-terminal domain K3X41_13420 PF10531 SLBB domain K3X41_13430 PF01370 NAD dependent epimerase/dehydratase family K3X41_13435 PF13579 Glycosyl transferase 4-like domain K3X41_13435 PF00534 Glycosyl transferases group 1 K3X41_13440 PF16363 GDP-mannose 4,6 dehydratase K3X41_13445 PF13439 Glycosyltransferase Family 4 K3X41_13445 PF00534 Glycosyl transferases group 1 K3X41_13470 PF13439 Glycosyltransferase Family 4 K3X41_13470 PF00534 Glycosyl transferases group 1 K3X41_13495 PF00149 Calcineurin-like phosphoesterase K3X41_13500 PF06082 Exopolysaccharide biosynthesis protein YbjH K3X41_13510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain K3X41_13510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K3X41_13515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K3X41_13515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K3X41_13515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K3X41_13515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K3X41_13520 PF01050 Mannose-6-phosphate isomerase K3X41_13520 PF00483 Nucleotidyl transferase K3X41_13540 PF01351 Ribonuclease HII K3X41_13545 PF01555 DNA methylase K3X41_13545 PF18755 Restriction Enzyme Adenine Methylase Associated K3X41_13550 PF00487 Fatty acid desaturase K3X41_13555 PF02397 Bacterial sugar transferase K3X41_13560 PF00730 HhH-GPD superfamily base excision DNA repair protein K3X41_13560 PF14815 NUDIX domain K3X41_13570 PF13462 Thioredoxin K3X41_13575 PF03734 L,D-transpeptidase catalytic domain K3X41_13580 PF05958 tRNA (Uracil-5-)-methyltransferase K3X41_13585 PF01743 Poly A polymerase head domain K3X41_13585 PF12627 Probable RNA and SrmB- binding site of polymerase A K3X41_13585 PF13735 tRNA nucleotidyltransferase domain 2 putative K3X41_13590 PF00293 NUDIX domain K3X41_13595 PF01430 Hsp33 protein K3X41_13600 PF00486 Transcriptional regulatory protein, C terminal K3X41_13600 PF00072 Response regulator receiver domain K3X41_13610 PF00291 Pyridoxal-phosphate dependent enzyme K3X41_13610 PF00585 C-terminal regulatory domain of Threonine dehydratase K3X41_13620 PF00764 Arginosuccinate synthase K3X41_13635 PF00294 pfkB family carbohydrate kinase K3X41_13640 PF00180 Isocitrate/isopropylmalate dehydrogenase K3X41_13645 PF03971 Monomeric isocitrate dehydrogenase K3X41_13655 PF13409 Glutathione S-transferase, N-terminal domain K3X41_13660 PF00390 Malic enzyme, N-terminal domain K3X41_13660 PF01515 Phosphate acetyl/butaryl transferase K3X41_13660 PF03949 Malic enzyme, NAD binding domain K3X41_13665 PF16363 GDP-mannose 4,6 dehydratase K3X41_13670 PF05192 MutS domain III K3X41_13670 PF05190 MutS family domain IV K3X41_13670 PF00488 MutS domain V K3X41_13670 PF05188 MutS domain II K3X41_13670 PF01624 MutS domain I K3X41_13675 PF04536 TPM domain K3X41_13680 PF01025 GrpE K3X41_13685 PF01628 HrcA protein C terminal domain K3X41_13690 PF01138 3' exoribonuclease family, domain 1 K3X41_13690 PF03725 3' exoribonuclease family, domain 2 K3X41_13695 PF01725 Ham1 family K3X41_13700 PF04055 Radical SAM superfamily K3X41_13700 PF06969 HemN C-terminal domain K3X41_13705 PF17762 HTH domain found in ParB protein K3X41_13705 PF02195 ParB-like nuclease domain K3X41_13710 PF13614 AAA domain K3X41_13715 PF02527 rRNA small subunit methyltransferase G K3X41_13720 PF13932 GidA associated domain K3X41_13720 PF01134 Glucose inhibited division protein A K3X41_13725 PF01926 50S ribosome-binding GTPase K3X41_13725 PF12631 MnmE helical domain K3X41_13725 PF10396 GTP-binding protein TrmE N-terminus K3X41_13730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K3X41_13730 PF07498 Rho termination factor, N-terminal domain K3X41_13730 PF07497 Rho termination factor, RNA-binding domain K3X41_13735 PF03653 Uncharacterised protein family (UPF0093) K3X41_13740 PF02545 Maf-like protein K3X41_13745 PF01488 Shikimate / quinate 5-dehydrogenase K3X41_13745 PF18317 Shikimate 5'-dehydrogenase C-terminal domain K3X41_13745 PF08501 Shikimate dehydrogenase substrate binding domain K3X41_13750 PF01121 Dephospho-CoA kinase K3X41_13755 PF00929 Exonuclease K3X41_13760 PF02556 Preprotein translocase subunit SecB K3X41_13765 PF00293 NUDIX domain K3X41_13770 PF04186 FxsA cytoplasmic membrane protein K3X41_13795 PF00004 ATPase family associated with various cellular activities (AAA) K3X41_13795 PF07724 AAA domain (Cdc48 subfamily) K3X41_13800 PF00227 Proteasome subunit K3X41_13805 PF00762 Ferrochelatase K3X41_13815 PF00156 Phosphoribosyl transferase domain K3X41_13820 PF00462 Glutaredoxin K3X41_13825 PF00795 Carbon-nitrogen hydrolase K3X41_13845 PF00561 alpha/beta hydrolase fold K3X41_13855 PF05175 Methyltransferase small domain K3X41_13855 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus K3X41_13860 PF17384 RimP C-terminal SH3 domain K3X41_13860 PF02576 RimP N-terminal domain K3X41_13865 PF13184 NusA-like KH domain K3X41_13865 PF08529 NusA N-terminal domain K3X41_13865 PF00575 S1 RNA binding domain K3X41_13875 PF00009 Elongation factor Tu GTP binding domain K3X41_13875 PF11987 Translation-initiation factor 2 K3X41_13875 PF08364 Bacterial translation initiation factor IF-2 associated region K3X41_13875 PF04760 Translation initiation factor IF-2, N-terminal region K3X41_13885 PF00293 NUDIX domain K3X41_13890 PF01960 ArgJ family K3X41_13895 PF05698 Bacterial trigger factor protein (TF) C-terminus K3X41_13900 PF02810 SEC-C motif K3X41_13900 PF01043 SecA preprotein cross-linking domain K3X41_13900 PF07516 SecA Wing and Scaffold domain K3X41_13900 PF07517 SecA DEAD-like domain K3X41_13910 PF12849 PBP superfamily domain K3X41_13915 PF04002 RadC-like JAB domain K3X41_13920 PF00226 DnaJ domain K3X41_13920 PF01556 DnaJ C terminal domain K3X41_13920 PF00684 DnaJ central domain K3X41_13925 PF00012 Hsp70 protein K3X41_13930 PF13532 2OG-Fe(II) oxygenase superfamily K3X41_13945 PF00459 Inositol monophosphatase family K3X41_13950 PF02348 Cytidylyltransferase K3X41_13955 PF00483 Nucleotidyl transferase K3X41_13980 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K3X41_13985 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K3X41_13985 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus K3X41_13990 PF00005 ABC transporter K3X41_14010 PF00476 DNA polymerase family A K3X41_14010 PF01612 3'-5' exonuclease K3X41_14020 PF13247 4Fe-4S dicluster domain K3X41_14020 PF12800 4Fe-4S binding domain K3X41_14025 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K3X41_14025 PF00384 Molybdopterin oxidoreductase K3X41_14025 PF01568 Molydopterin dinucleotide binding domain K3X41_14030 PF07859 alpha/beta hydrolase fold K3X41_14040 PF02606 Tetraacyldisaccharide-1-P 4'-kinase K3X41_14050 PF03734 L,D-transpeptidase catalytic domain K3X41_14055 PF00034 Cytochrome c K3X41_14060 PF00115 Cytochrome C and Quinol oxidase polypeptide I K3X41_14065 PF07728 AAA domain (dynein-related subfamily) K3X41_14065 PF08406 CbbQ/NirQ/NorQ C-terminal K3X41_14070 PF00092 von Willebrand factor type A domain K3X41_14075 PF00510 Cytochrome c oxidase subunit III K3X41_14085 PF00027 Cyclic nucleotide-binding domain K3X41_14085 PF13545 Crp-like helix-turn-helix domain K3X41_14100 PF01209 ubiE/COQ5 methyltransferase family K3X41_14115 PF13473 Cupredoxin-like domain K3X41_14115 PF18764 Nitrous oxide reductase propeller repeat K3X41_14115 PF18793 Nitrous oxide reductase propeller repeat 2 K3X41_14140 PF12800 4Fe-4S binding domain K3X41_14140 PF12838 4Fe-4S dicluster domain K3X41_14145 PF13237 4Fe-4S dicluster domain K3X41_14145 PF12801 4Fe-4S binding domain K3X41_14150 PF00005 ABC transporter K3X41_14170 PF02630 SCO1/SenC K3X41_14180 PF00085 Thioredoxin K3X41_14185 PF13361 UvrD-like helicase C-terminal domain K3X41_14185 PF12705 PD-(D/E)XK nuclease superfamily K3X41_14185 PF00580 UvrD/REP helicase N-terminal domain K3X41_14195 PF12804 MobA-like NTP transferase domain K3X41_14200 PF01636 Phosphotransferase enzyme family K3X41_14205 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE K3X41_14215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_14215 PF00512 His Kinase A (phospho-acceptor) domain K3X41_14220 PF02630 SCO1/SenC K3X41_14225 PF02954 Bacterial regulatory protein, Fis family K3X41_14225 PF00072 Response regulator receiver domain K3X41_14245 PF01966 HD domain K3X41_14255 PF01501 Glycosyl transferase family 8 K3X41_14255 PF00535 Glycosyl transferase family 2 K3X41_14265 PF05221 S-adenosyl-L-homocysteine hydrolase K3X41_14265 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K3X41_14270 PF00291 Pyridoxal-phosphate dependent enzyme K3X41_14275 PF01476 LysM domain K3X41_14275 PF04972 BON domain K3X41_14285 PF04199 Putative cyclase K3X41_14305 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus K3X41_14305 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K3X41_14310 PF00814 Glycoprotease family K3X41_14335 PF17831 Pyruvate dehydrogenase E1 component middle domain K3X41_14335 PF00456 Transketolase, thiamine diphosphate binding domain K3X41_14340 PF01037 Lrp/AsnC ligand binding domain K3X41_14345 PF01053 Cys/Met metabolism PLP-dependent enzyme K3X41_14350 PF01037 Lrp/AsnC ligand binding domain K3X41_14360 PF12161 HsdM N-terminal domain K3X41_14360 PF02384 N-6 DNA Methylase K3X41_14375 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) K3X41_14375 PF18766 SWI2/SNF2 ATPase K3X41_14375 PF12008 Type I restriction and modification enzyme - subunit R C terminal K3X41_14405 PF00202 Aminotransferase class-III K3X41_14415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_14415 PF00512 His Kinase A (phospho-acceptor) domain K3X41_14415 PF08448 PAS fold K3X41_14415 PF13426 PAS domain K3X41_14415 PF00072 Response regulator receiver domain K3X41_14425 PF06253 Trimethylamine methyltransferase (MTTB) K3X41_14430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K3X41_14435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K3X41_14440 PF00920 Dehydratase family K3X41_14445 PF01966 HD domain K3X41_14450 PF06155 Protein of unknown function (DUF971) K3X41_14450 PF02668 Taurine catabolism dioxygenase TauD, TfdA family K3X41_14455 PF03466 LysR substrate binding domain K3X41_14455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_14460 PF00378 Enoyl-CoA hydratase/isomerase K3X41_14465 PF00561 alpha/beta hydrolase fold K3X41_14470 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K3X41_14475 PF07702 UTRA domain K3X41_14475 PF00392 Bacterial regulatory proteins, gntR family K3X41_14485 PF01979 Amidohydrolase family K3X41_14490 PF00221 Aromatic amino acid lyase K3X41_14500 PF01175 Urocanase Rossmann-like domain K3X41_14500 PF17392 Urocanase C-terminal domain K3X41_14500 PF17391 Urocanase N-terminal domain K3X41_14505 PF03480 Bacterial extracellular solute-binding protein, family 7 K3X41_14515 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_14530 PF01678 Diaminopimelate epimerase K3X41_14535 PF04055 Radical SAM superfamily K3X41_14535 PF00919 Uncharacterized protein family UPF0004 K3X41_14540 PF04299 Putative FMN-binding domain K3X41_14565 PF00355 Rieske [2Fe-2S] domain K3X41_14565 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal K3X41_14570 PF00033 Cytochrome b/b6/petB K3X41_14570 PF00032 Cytochrome b(C-terminal)/b6/petD K3X41_14575 PF02167 Cytochrome C1 family K3X41_14585 PF00005 ABC transporter K3X41_14590 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_14605 PF00892 EamA-like transporter family K3X41_14610 PF01264 Chorismate synthase K3X41_14615 PF01966 HD domain K3X41_14630 PF00216 Bacterial DNA-binding protein K3X41_14635 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus K3X41_14635 PF01048 Phosphorylase superfamily K3X41_14640 PF13382 Adenine deaminase C-terminal domain K3X41_14640 PF01979 Amidohydrolase family K3X41_14645 PF12833 Helix-turn-helix domain K3X41_14645 PF01965 DJ-1/PfpI family K3X41_14650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_14650 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_14650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_14665 PF00378 Enoyl-CoA hydratase/isomerase K3X41_14675 PF02780 Transketolase, C-terminal domain K3X41_14675 PF02779 Transketolase, pyrimidine binding domain K3X41_14675 PF13292 1-deoxy-D-xylulose-5-phosphate synthase K3X41_14680 PF00348 Polyprenyl synthetase K3X41_14685 PF02609 Exonuclease VII small subunit K3X41_14690 PF00850 Histone deacetylase domain K3X41_14700 PF00072 Response regulator receiver domain K3X41_14700 PF00486 Transcriptional regulatory protein, C terminal K3X41_14705 PF12802 MarR family K3X41_14710 PF01063 Amino-transferase class IV K3X41_14725 PF00034 Cytochrome c K3X41_14725 PF03150 Di-haem cytochrome c peroxidase K3X41_14730 PF08331 Domain of unknown function (DUF1730) K3X41_14735 PF00043 Glutathione S-transferase, C-terminal domain K3X41_14735 PF13417 Glutathione S-transferase, N-terminal domain K3X41_14740 PF00912 Transglycosylase K3X41_14750 PF00310 Glutamine amidotransferases class-II K3X41_14750 PF04898 Glutamate synthase central domain K3X41_14750 PF01645 Conserved region in glutamate synthase K3X41_14750 PF01493 GXGXG motif K3X41_14755 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3X41_14755 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K3X41_14760 PF02673 Bacitracin resistance protein BacA K3X41_14775 PF00849 RNA pseudouridylate synthase K3X41_14780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K3X41_14780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K3X41_14795 PF00171 Aldehyde dehydrogenase family K3X41_14805 PF01494 FAD binding domain K3X41_14810 PF00753 Metallo-beta-lactamase superfamily K3X41_14815 PF10755 Protein of unknown function (DUF2585) K3X41_14820 PF01557 Fumarylacetoacetate (FAA) hydrolase family K3X41_14825 PF02798 Glutathione S-transferase, N-terminal domain K3X41_14825 PF14497 Glutathione S-transferase, C-terminal domain K3X41_14830 PF04209 homogentisate 1,2-dioxygenase K3X41_14835 PF00691 OmpA family K3X41_14835 PF13677 Membrane MotB of proton-channel complex MotA/MotB K3X41_14840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K3X41_14840 PF00460 Flagella basal body rod protein K3X41_14855 PF02119 Flagellar P-ring protein K3X41_14865 PF02107 Flagellar L-ring protein K3X41_14875 PF00460 Flagella basal body rod protein K3X41_14875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K3X41_14880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K3X41_14880 PF00460 Flagella basal body rod protein K3X41_14885 PF01313 Bacterial export proteins, family 3 K3X41_14890 PF02049 Flagellar hook-basal body complex protein FliE K3X41_14895 PF00460 Flagella basal body rod protein K3X41_14895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K3X41_14900 PF00460 Flagella basal body rod protein K3X41_14905 PF18269 T3SS EscN ATPase C-terminal domain K3X41_14905 PF02874 ATP synthase alpha/beta family, beta-barrel domain K3X41_14905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K3X41_14915 PF07378 Flagellar protein FlbT K3X41_14925 PF00700 Bacterial flagellin C-terminal helical region K3X41_14925 PF00669 Bacterial flagellin N-terminal helical region K3X41_14945 PF03963 Flagellar hook capping protein - N-terminal region K3X41_14950 PF03109 ABC1 family K3X41_14955 PF01209 ubiE/COQ5 methyltransferase family K3X41_14965 PF06827 Zinc finger found in FPG and IleRS K3X41_14965 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain K3X41_14965 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain K3X41_14970 PF00378 Enoyl-CoA hydratase/isomerase K3X41_14975 PF01649 Ribosomal protein S20 K3X41_14985 PF06750 Bacterial Peptidase A24 N-terminal domain K3X41_14985 PF01478 Type IV leader peptidase family K3X41_14990 PF00482 Type II secretion system (T2SS), protein F K3X41_14995 PF00437 Type II/IV secretion system protein K3X41_14995 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain K3X41_15020 PF00263 Bacterial type II and III secretion system protein K3X41_15020 PF03958 Bacterial type II/III secretion system short domain K3X41_15030 PF00114 Pilin (bacterial filament) K3X41_15030 PF07963 Prokaryotic N-terminal methylation motif K3X41_15035 PF07963 Prokaryotic N-terminal methylation motif K3X41_15035 PF08334 Type II secretion system (T2SS), protein G K3X41_15060 PF00005 ABC transporter K3X41_15070 PF00535 Glycosyl transferase family 2 K3X41_15075 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase K3X41_15080 PF16363 GDP-mannose 4,6 dehydratase K3X41_15085 PF04321 RmlD substrate binding domain K3X41_15090 PF00483 Nucleotidyl transferase K3X41_15110 PF00535 Glycosyl transferase family 2 K3X41_15120 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) K3X41_15120 PF08548 Peptidase M10 serralysin C terminal K3X41_15120 PF00413 Matrixin K3X41_15125 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family K3X41_15135 PF02502 Ribose/Galactose Isomerase K3X41_15140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3X41_15140 PF03466 LysR substrate binding domain K3X41_15145 PF00141 Peroxidase K3X41_15155 PF01103 Surface antigen K3X41_15155 PF07244 Surface antigen variable number repeat K3X41_15155 PF17243 POTRA domain TamA domain 1 K3X41_15160 PF02423 Ornithine cyclodeaminase/mu-crystallin family K3X41_15170 PF00491 Arginase family K3X41_15180 PF17674 HHH domain K3X41_15180 PF09371 Tex-like protein N-terminal domain K3X41_15180 PF00575 S1 RNA binding domain K3X41_15180 PF16921 Tex protein YqgF-like domain K3X41_15190 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K3X41_15190 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K3X41_15210 PF08402 TOBE domain K3X41_15210 PF00005 ABC transporter K3X41_15220 PF16347 Domain of unknown function (DUF4976) K3X41_15220 PF00884 Sulfatase K3X41_15225 PF00005 ABC transporter K3X41_15225 PF03459 TOBE domain K3X41_15230 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_15240 PF12849 PBP superfamily domain K3X41_15245 PF00005 ABC transporter K3X41_15250 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_15260 PF01235 Sodium:alanine symporter family K3X41_15270 PF01571 Aminomethyltransferase folate-binding domain K3X41_15270 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3X41_15275 PF01597 Glycine cleavage H-protein K3X41_15280 PF02347 Glycine cleavage system P-protein K3X41_15285 PF01965 DJ-1/PfpI family K3X41_15285 PF12833 Helix-turn-helix domain K3X41_15295 PF13614 AAA domain K3X41_15295 PF00376 MerR family regulatory protein K3X41_15305 PF01066 CDP-alcohol phosphatidyltransferase K3X41_15310 PF13416 Bacterial extracellular solute-binding protein K3X41_15315 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_15320 PF00005 ABC transporter K3X41_15325 PF00005 ABC transporter K3X41_15330 PF02361 Cobalt transport protein K3X41_15335 PF02632 BioY family K3X41_15340 PF00576 HIUase/Transthyretin family K3X41_15345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K3X41_15345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K3X41_15360 PF01321 Creatinase/Prolidase N-terminal domain K3X41_15360 PF00557 Metallopeptidase family M24 K3X41_15365 PF00291 Pyridoxal-phosphate dependent enzyme K3X41_15370 PF07687 Peptidase dimerisation domain K3X41_15370 PF01546 Peptidase family M20/M25/M40 K3X41_15375 PF01037 Lrp/AsnC ligand binding domain K3X41_15380 PF08241 Methyltransferase domain K3X41_15390 PF00202 Aminotransferase class-III K3X41_15390 PF06968 Biotin and Thiamin Synthesis associated domain K3X41_15390 PF04055 Radical SAM superfamily K3X41_15400 PF00155 Aminotransferase class I and II K3X41_15405 PF06968 Biotin and Thiamin Synthesis associated domain K3X41_15405 PF04055 Radical SAM superfamily K3X41_15410 PF05378 Hydantoinase/oxoprolinase N-terminal region K3X41_15410 PF01968 Hydantoinase/oxoprolinase K3X41_15415 PF14850 DNA-binding domain of Proline dehydrogenase K3X41_15415 PF01619 Proline dehydrogenase K3X41_15415 PF18327 Proline utilization A proline dehydrogenase N-terminal domain K3X41_15415 PF00171 Aldehyde dehydrogenase family K3X41_15420 PF01037 Lrp/AsnC ligand binding domain K3X41_15425 PF11791 Aconitate B N-terminal domain K3X41_15425 PF06434 Aconitate hydratase 2 N-terminus K3X41_15425 PF00330 Aconitase family (aconitate hydratase) K3X41_15435 PF01979 Amidohydrolase family K3X41_15445 PF02666 Phosphatidylserine decarboxylase K3X41_15450 PF01066 CDP-alcohol phosphatidyltransferase K3X41_15460 PF01891 Cobalt uptake substrate-specific transmembrane region K3X41_15475 PF00005 ABC transporter K3X41_15480 PF07729 FCD domain K3X41_15480 PF00392 Bacterial regulatory proteins, gntR family K3X41_15485 PF00120 Glutamine synthetase, catalytic domain K3X41_15485 PF03951 Glutamine synthetase, beta-Grasp domain K3X41_15490 PF01266 FAD dependent oxidoreductase K3X41_15495 PF01266 FAD dependent oxidoreductase K3X41_15500 PF09856 Predicted transcriptional regulator (DUF2083) K3X41_15500 PF06114 IrrE N-terminal-like domain K3X41_15500 PF01381 Helix-turn-helix K3X41_15505 PF00202 Aminotransferase class-III K3X41_15510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_15510 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_15510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_15515 PF00171 Aldehyde dehydrogenase family K3X41_15520 PF00072 Response regulator receiver domain K3X41_15520 PF00196 Bacterial regulatory proteins, luxR family K3X41_15525 PF00512 His Kinase A (phospho-acceptor) domain K3X41_15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_15525 PF13426 PAS domain K3X41_15525 PF00072 Response regulator receiver domain K3X41_15525 PF08448 PAS fold K3X41_15530 PF16868 NMT1-like family K3X41_15540 PF00582 Universal stress protein family K3X41_15570 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_15575 PF00528 Binding-protein-dependent transport system inner membrane component K3X41_15580 PF00005 ABC transporter K3X41_15580 PF17912 MalK OB fold domain K3X41_15580 PF03459 TOBE domain K3X41_15585 PF00005 ABC transporter K3X41_15585 PF08402 TOBE domain K3X41_15605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3X41_15645 PF00218 Indole-3-glycerol phosphate synthase K3X41_15650 PF02885 Glycosyl transferase family, helical bundle domain K3X41_15650 PF00591 Glycosyl transferase family, a/b domain K3X41_15655 PF00550 Phosphopantetheine attachment site K3X41_15660 PF00501 AMP-binding enzyme K3X41_15660 PF13193 AMP-binding enzyme C-terminal domain K3X41_15665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3X41_15665 PF02770 Acyl-CoA dehydrogenase, middle domain K3X41_15665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3X41_15670 PF00109 Beta-ketoacyl synthase, N-terminal domain K3X41_15670 PF02801 Beta-ketoacyl synthase, C-terminal domain K3X41_15680 PF06339 Ectoine synthase K3X41_15690 PF00497 Bacterial extracellular solute-binding proteins, family 3 K3X41_15690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3X41_15690 PF00512 His Kinase A (phospho-acceptor) domain K3X41_15695 PF00072 Response regulator receiver domain K3X41_15695 PF00486 Transcriptional regulatory protein, C terminal K3X41_15705 PF17131 Outer membrane lipoprotein-sorting protein K3X41_15715 PF00005 ABC transporter K3X41_15725 PF00072 Response regulator receiver domain K3X41_15725 PF00486 Transcriptional regulatory protein, C terminal K3X41_15730 PF02441 Flavoprotein K3X41_15735 PF01810 LysE type translocator K3X41_15750 PF03756 A-factor biosynthesis hotdog domain K3X41_15755 PF00290 Tryptophan synthase alpha chain