locus-tag class description K3556_00005 PF00308 Bacterial dnaA protein K3556_00005 PF08299 Bacterial dnaA protein helix-turn-helix K3556_00005 PF11638 DnaA N-terminal domain K3556_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain K3556_00010 PF02767 DNA polymerase III beta subunit, central domain K3556_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain K3556_00015 PF02463 RecF/RecN/SMC N terminal domain K3556_00025 PF01810 LysE type translocator K3556_00030 PF01751 Toprim domain K3556_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_00030 PF00204 DNA gyrase B K3556_00030 PF00986 DNA gyrase B subunit, carboxyl terminus K3556_00055 PF00814 Glycoprotease family K3556_00060 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus K3556_00060 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K3556_00065 PF03795 YCII-related domain K3556_00085 PF01476 LysM domain K3556_00085 PF04972 BON domain K3556_00090 PF00291 Pyridoxal-phosphate dependent enzyme K3556_00100 PF05221 S-adenosyl-L-homocysteine hydrolase K3556_00100 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K3556_00105 PF01966 HD domain K3556_00120 PF02954 Bacterial regulatory protein, Fis family K3556_00120 PF00072 Response regulator receiver domain K3556_00125 PF02630 SCO1/SenC K3556_00130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_00130 PF00512 His Kinase A (phospho-acceptor) domain K3556_00135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_00135 PF00512 His Kinase A (phospho-acceptor) domain K3556_00140 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE K3556_00145 PF01636 Phosphotransferase enzyme family K3556_00150 PF00483 Nucleotidyl transferase K3556_00160 PF13361 UvrD-like helicase C-terminal domain K3556_00160 PF00580 UvrD/REP helicase N-terminal domain K3556_00165 PF00085 Thioredoxin K3556_00170 PF03734 L,D-transpeptidase catalytic domain K3556_00180 PF03734 L,D-transpeptidase catalytic domain K3556_00185 PF05958 tRNA (Uracil-5-)-methyltransferase K3556_00190 PF01743 Poly A polymerase head domain K3556_00190 PF12627 Probable RNA and SrmB- binding site of polymerase A K3556_00190 PF13735 tRNA nucleotidyltransferase domain 2 putative K3556_00195 PF00293 NUDIX domain K3556_00200 PF01430 Hsp33 protein K3556_00205 PF00293 NUDIX domain K3556_00210 PF00072 Response regulator receiver domain K3556_00210 PF00486 Transcriptional regulatory protein, C terminal K3556_00220 PF00291 Pyridoxal-phosphate dependent enzyme K3556_00220 PF00585 C-terminal regulatory domain of Threonine dehydratase K3556_00230 PF00764 Arginosuccinate synthase K3556_00245 PF00294 pfkB family carbohydrate kinase K3556_00250 PF00180 Isocitrate/isopropylmalate dehydrogenase K3556_00255 PF03971 Monomeric isocitrate dehydrogenase K3556_00265 PF01515 Phosphate acetyl/butaryl transferase K3556_00265 PF00390 Malic enzyme, N-terminal domain K3556_00265 PF03949 Malic enzyme, NAD binding domain K3556_00270 PF16363 GDP-mannose 4,6 dehydratase K3556_00275 PF00488 MutS domain V K3556_00275 PF01624 MutS domain I K3556_00275 PF05188 MutS domain II K3556_00275 PF05192 MutS domain III K3556_00275 PF05190 MutS family domain IV K3556_00280 PF01025 GrpE K3556_00285 PF01628 HrcA protein C terminal domain K3556_00290 PF01138 3' exoribonuclease family, domain 1 K3556_00290 PF03725 3' exoribonuclease family, domain 2 K3556_00295 PF01725 Ham1 family K3556_00300 PF06969 HemN C-terminal domain K3556_00300 PF04055 Radical SAM superfamily K3556_00305 PF17762 HTH domain found in ParB protein K3556_00305 PF02195 ParB-like nuclease domain K3556_00310 PF13614 AAA domain K3556_00315 PF02527 rRNA small subunit methyltransferase G K3556_00320 PF01134 Glucose inhibited division protein A K3556_00320 PF13932 GidA associated domain K3556_00325 PF01926 50S ribosome-binding GTPase K3556_00325 PF12631 MnmE helical domain K3556_00325 PF10396 GTP-binding protein TrmE N-terminus K3556_00330 PF07498 Rho termination factor, N-terminal domain K3556_00330 PF07497 Rho termination factor, RNA-binding domain K3556_00330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K3556_00335 PF03653 Uncharacterised protein family (UPF0093) K3556_00340 PF02545 Maf-like protein K3556_00345 PF18317 Shikimate 5'-dehydrogenase C-terminal domain K3556_00345 PF01488 Shikimate / quinate 5-dehydrogenase K3556_00345 PF08501 Shikimate dehydrogenase substrate binding domain K3556_00350 PF01121 Dephospho-CoA kinase K3556_00355 PF00929 Exonuclease K3556_00360 PF02556 Preprotein translocase subunit SecB K3556_00365 PF00293 NUDIX domain K3556_00395 PF00004 ATPase family associated with various cellular activities (AAA) K3556_00395 PF07724 AAA domain (Cdc48 subfamily) K3556_00400 PF00227 Proteasome subunit K3556_00410 PF00762 Ferrochelatase K3556_00425 PF00462 Glutaredoxin K3556_00430 PF00795 Carbon-nitrogen hydrolase K3556_00450 PF00561 alpha/beta hydrolase fold K3556_00455 PF17384 RimP C-terminal SH3 domain K3556_00455 PF02576 RimP N-terminal domain K3556_00460 PF00575 S1 RNA binding domain K3556_00460 PF08529 NusA N-terminal domain K3556_00460 PF13184 NusA-like KH domain K3556_00470 PF00009 Elongation factor Tu GTP binding domain K3556_00470 PF11987 Translation-initiation factor 2 K3556_00470 PF08364 Bacterial translation initiation factor IF-2 associated region K3556_00470 PF04760 Translation initiation factor IF-2, N-terminal region K3556_00480 PF00293 NUDIX domain K3556_00485 PF01960 ArgJ family K3556_00490 PF05698 Bacterial trigger factor protein (TF) C-terminus K3556_00495 PF02810 SEC-C motif K3556_00495 PF07517 SecA DEAD-like domain K3556_00495 PF01043 SecA preprotein cross-linking domain K3556_00495 PF07516 SecA Wing and Scaffold domain K3556_00500 PF12849 PBP superfamily domain K3556_00505 PF04002 RadC-like JAB domain K3556_00510 PF00684 DnaJ central domain K3556_00510 PF01556 DnaJ C terminal domain K3556_00510 PF00226 DnaJ domain K3556_00515 PF00012 Hsp70 protein K3556_00520 PF13532 2OG-Fe(II) oxygenase superfamily K3556_00530 PF00459 Inositol monophosphatase family K3556_00535 PF02348 Cytidylyltransferase K3556_00540 PF00483 Nucleotidyl transferase K3556_00565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K3556_00570 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus K3556_00570 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K3556_00575 PF00005 ABC transporter K3556_00600 PF12800 4Fe-4S binding domain K3556_00600 PF13247 4Fe-4S dicluster domain K3556_00605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K3556_00605 PF00384 Molybdopterin oxidoreductase K3556_00605 PF01568 Molydopterin dinucleotide binding domain K3556_00610 PF07859 alpha/beta hydrolase fold K3556_00620 PF02606 Tetraacyldisaccharide-1-P 4'-kinase K3556_00625 PF13462 Thioredoxin K3556_00635 PF00633 Helix-hairpin-helix motif K3556_00635 PF00730 HhH-GPD superfamily base excision DNA repair protein K3556_00635 PF14815 NUDIX domain K3556_00640 PF00487 Fatty acid desaturase K3556_00650 PF01555 DNA methylase K3556_00650 PF18755 Restriction Enzyme Adenine Methylase Associated K3556_00655 PF01351 Ribonuclease HII K3556_00675 PF07883 Cupin domain K3556_00675 PF05899 Protein of unknown function (DUF861) K3556_00680 PF09339 IclR helix-turn-helix domain K3556_00680 PF01614 Bacterial transcriptional regulator K3556_00685 PF00266 Aminotransferase class-V K3556_00690 PF00291 Pyridoxal-phosphate dependent enzyme K3556_00695 PF01168 Alanine racemase, N-terminal domain K3556_00695 PF14031 Putative serine dehydratase domain K3556_00700 PF02423 Ornithine cyclodeaminase/mu-crystallin family K3556_00705 PF01515 Phosphate acetyl/butaryl transferase K3556_00705 PF00390 Malic enzyme, N-terminal domain K3556_00705 PF03949 Malic enzyme, NAD binding domain K3556_00710 PF00860 Permease family K3556_00715 PF04115 Ureidoglycolate lyase K3556_00725 PF00576 HIUase/Transthyretin family K3556_00730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_00730 PF03466 LysR substrate binding domain K3556_00745 PF03466 LysR substrate binding domain K3556_00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_00750 PF00111 2Fe-2S iron-sulfur cluster binding domain K3556_00750 PF01799 [2Fe-2S] binding domain K3556_00755 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K3556_00755 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase K3556_00770 PF01979 Amidohydrolase family K3556_00780 PF00356 Bacterial regulatory proteins, lacI family K3556_00780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K3556_00785 PF00459 Inositol monophosphatase family K3556_00790 PF01523 Putative modulator of DNA gyrase K3556_00800 PF00378 Enoyl-CoA hydratase/isomerase K3556_00805 PF12794 Mechanosensitive ion channel inner membrane domain 1 K3556_00805 PF12795 Mechanosensitive ion channel porin domain K3556_00805 PF00924 Mechanosensitive ion channel K3556_00810 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K3556_00810 PF01266 FAD dependent oxidoreductase K3556_00815 PF14497 Glutathione S-transferase, C-terminal domain K3556_00815 PF02798 Glutathione S-transferase, N-terminal domain K3556_00830 PF09334 tRNA synthetases class I (M) K3556_00830 PF13603 Leucyl-tRNA synthetase, Domain 2 K3556_00830 PF00133 tRNA synthetases class I (I, L, M and V) K3556_00830 PF08264 Anticodon-binding domain of tRNA K3556_00835 PF12100 Domain of unknown function (DUF3576) K3556_00840 PF13609 Gram-negative porin K3556_00845 PF01168 Alanine racemase, N-terminal domain K3556_00855 PF00925 GTP cyclohydrolase II K3556_00860 PF00486 Transcriptional regulatory protein, C terminal K3556_00860 PF00072 Response regulator receiver domain K3556_00875 PF09278 MerR, DNA binding K3556_00875 PF00376 MerR family regulatory protein K3556_00885 PF03372 Endonuclease/Exonuclease/phosphatase family K3556_00890 PF00085 Thioredoxin K3556_00900 PF03966 Trm112p-like protein K3556_00905 PF01494 FAD binding domain K3556_00910 PF01425 Amidase K3556_00915 PF00155 Aminotransferase class I and II K3556_00920 PF01580 FtsK/SpoIIIE family K3556_00920 PF13491 4TM region of DNA translocase FtsK/SpoIIIE K3556_00920 PF17854 FtsK alpha domain K3556_00920 PF09397 Ftsk gamma domain K3556_00955 PF01740 STAS domain K3556_00960 PF00108 Thiolase, N-terminal domain K3556_00960 PF02803 Thiolase, C-terminal domain K3556_00965 PF13185 GAF domain K3556_00980 PF16350 FAD dependent oxidoreductase central domain K3556_00980 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_00980 PF01571 Aminomethyltransferase folate-binding domain K3556_00980 PF01266 FAD dependent oxidoreductase K3556_00990 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_00990 PF01571 Aminomethyltransferase folate-binding domain K3556_00990 PF16350 FAD dependent oxidoreductase central domain K3556_00990 PF01266 FAD dependent oxidoreductase K3556_01000 PF00892 EamA-like transporter family K3556_01005 PF00849 RNA pseudouridylate synthase K3556_01010 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K3556_01010 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K3556_01020 PF00171 Aldehyde dehydrogenase family K3556_01025 PF10417 C-terminal domain of 1-Cys peroxiredoxin K3556_01025 PF00578 AhpC/TSA family K3556_01035 PF01494 FAD binding domain K3556_01040 PF00753 Metallo-beta-lactamase superfamily K3556_01045 PF10755 Protein of unknown function (DUF2585) K3556_01050 PF01557 Fumarylacetoacetate (FAA) hydrolase family K3556_01055 PF14497 Glutathione S-transferase, C-terminal domain K3556_01055 PF02798 Glutathione S-transferase, N-terminal domain K3556_01060 PF04209 homogentisate 1,2-dioxygenase K3556_01065 PF13677 Membrane MotB of proton-channel complex MotA/MotB K3556_01065 PF00691 OmpA family K3556_01070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K3556_01070 PF00460 Flagella basal body rod protein K3556_01070 PF07559 Flagellar basal body protein FlaE K3556_01085 PF02119 Flagellar P-ring protein K3556_01095 PF00459 Inositol monophosphatase family K3556_01100 PF02690 Na+/Pi-cotransporter K3556_01110 PF00005 ABC transporter K3556_01115 PF00528 Binding-protein-dependent transport system inner membrane component K3556_01120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_01120 PF03466 LysR substrate binding domain K3556_01125 PF00266 Aminotransferase class-V K3556_01130 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase K3556_01135 PF00171 Aldehyde dehydrogenase family K3556_01140 PF00202 Aminotransferase class-III K3556_01150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K3556_01150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3556_01150 PF01842 ACT domain K3556_01160 PF01571 Aminomethyltransferase folate-binding domain K3556_01160 PF01266 FAD dependent oxidoreductase K3556_01160 PF16350 FAD dependent oxidoreductase central domain K3556_01160 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_01170 PF01266 FAD dependent oxidoreductase K3556_01170 PF16350 FAD dependent oxidoreductase central domain K3556_01170 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_01170 PF01571 Aminomethyltransferase folate-binding domain K3556_01180 PF00528 Binding-protein-dependent transport system inner membrane component K3556_01185 PF00571 CBS domain K3556_01185 PF00005 ABC transporter K3556_01195 PF08220 DeoR-like helix-turn-helix domain K3556_01195 PF00455 DeoR C terminal sensor domain K3556_01200 PF01037 Lrp/AsnC ligand binding domain K3556_01205 PF07687 Peptidase dimerisation domain K3556_01205 PF01546 Peptidase family M20/M25/M40 K3556_01210 PF00291 Pyridoxal-phosphate dependent enzyme K3556_01240 PF16350 FAD dependent oxidoreductase central domain K3556_01240 PF01571 Aminomethyltransferase folate-binding domain K3556_01240 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_01240 PF01266 FAD dependent oxidoreductase K3556_01250 PF13407 Periplasmic binding protein domain K3556_01255 PF02653 Branched-chain amino acid transport system / permease component K3556_01260 PF00005 ABC transporter K3556_01265 PF01515 Phosphate acetyl/butaryl transferase K3556_01270 PF03601 Conserved hypothetical protein 698 K3556_01275 PF00665 Integrase core domain K3556_01280 PF01695 IstB-like ATP binding protein K3556_01310 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_01315 PF09339 IclR helix-turn-helix domain K3556_01315 PF01614 Bacterial transcriptional regulator K3556_01325 PF02515 CoA-transferase family III K3556_01330 PF02770 Acyl-CoA dehydrogenase, middle domain K3556_01330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3556_01330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3556_01335 PF06082 Exopolysaccharide biosynthesis protein YbjH K3556_01345 PF01050 Mannose-6-phosphate isomerase K3556_01345 PF00483 Nucleotidyl transferase K3556_01355 PF00188 Cysteine-rich secretory protein family K3556_01360 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain K3556_01360 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain K3556_01360 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K3556_01365 PF02397 Bacterial sugar transferase K3556_01370 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase K3556_01385 PF00535 Glycosyl transferase family 2 K3556_01390 PF00483 Nucleotidyl transferase K3556_01395 PF04321 RmlD substrate binding domain K3556_01400 PF16363 GDP-mannose 4,6 dehydratase K3556_01405 PF00535 Glycosyl transferase family 2 K3556_01435 PF00005 ABC transporter K3556_01445 PF01061 ABC-2 type transporter K3556_01455 PF00581 Rhodanese-like domain K3556_01455 PF17773 UPF0176 acylphosphatase like domain K3556_01460 PF00857 Isochorismatase family K3556_01465 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family K3556_01465 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain K3556_01490 PF00202 Aminotransferase class-III K3556_01495 PF00472 RF-1 domain K3556_01500 PF02592 Putative vitamin uptake transporter K3556_01510 PF03411 Penicillin-insensitive murein endopeptidase K3556_01525 PF02325 YGGT family K3556_01530 PF00570 HRDC domain K3556_01530 PF00270 DEAD/DEAH box helicase K3556_01530 PF00271 Helicase conserved C-terminal domain K3556_01530 PF16124 RecQ zinc-binding K3556_01530 PF09382 RQC domain K3556_01535 PF03883 Peroxide stress protein YaaA K3556_01540 PF00672 HAMP domain K3556_01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_01540 PF00512 His Kinase A (phospho-acceptor) domain K3556_01540 PF01627 Hpt domain K3556_01540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K3556_01540 PF00072 Response regulator receiver domain K3556_01550 PF00445 Ribonuclease T2 family K3556_01560 PF01261 Xylose isomerase-like TIM barrel K3556_01570 PF04962 KduI/IolB family K3556_01580 PF01261 Xylose isomerase-like TIM barrel K3556_01585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3556_01585 PF00205 Thiamine pyrophosphate enzyme, central domain K3556_01585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3556_01590 PF00294 pfkB family carbohydrate kinase K3556_01595 PF00005 ABC transporter K3556_01600 PF02653 Branched-chain amino acid transport system / permease component K3556_01610 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K3556_01610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K3556_01615 PF00356 Bacterial regulatory proteins, lacI family K3556_01620 PF00107 Zinc-binding dehydrogenase K3556_01620 PF14765 Polyketide synthase dehydratase K3556_01620 PF08240 Alcohol dehydrogenase GroES-like domain K3556_01620 PF00698 Acyl transferase domain K3556_01620 PF02801 Beta-ketoacyl synthase, C-terminal domain K3556_01620 PF08659 KR domain K3556_01620 PF16197 Ketoacyl-synthetase C-terminal extension K3556_01620 PF00109 Beta-ketoacyl synthase, N-terminal domain K3556_01620 PF00550 Phosphopantetheine attachment site K3556_01630 PF01165 Ribosomal protein S21 K3556_01635 PF02423 Ornithine cyclodeaminase/mu-crystallin family K3556_01655 PF00155 Aminotransferase class I and II K3556_01660 PF03186 CobD/Cbib protein K3556_01675 PF02463 RecF/RecN/SMC N terminal domain K3556_01680 PF07683 Cobalamin synthesis protein cobW C-terminal domain K3556_01680 PF02492 CobW/HypB/UreG, nucleotide-binding domain K3556_01695 PF02514 CobN/Magnesium Chelatase K3556_01715 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K3556_01725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3556_01725 PF00205 Thiamine pyrophosphate enzyme, central domain K3556_01725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3556_01730 PF03358 NADPH-dependent FMN reductase K3556_01740 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K3556_01740 PF01266 FAD dependent oxidoreductase K3556_01750 PF14718 Soluble lytic murein transglycosylase L domain K3556_01750 PF01464 Transglycosylase SLT domain K3556_01755 PF00701 Dihydrodipicolinate synthetase family K3556_01760 PF01668 SmpB protein K3556_01765 PF00994 Probable molybdopterin binding domain K3556_01765 PF03454 MoeA C-terminal region (domain IV) K3556_01765 PF03453 MoeA N-terminal region (domain I and II) K3556_01770 PF12804 MobA-like NTP transferase domain K3556_01775 PF02634 FdhD/NarQ family K3556_01805 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K3556_01805 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K3556_01815 PF02770 Acyl-CoA dehydrogenase, middle domain K3556_01815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3556_01815 PF12806 Acetyl-CoA dehydrogenase C-terminal like K3556_01815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3556_01820 PF01300 Telomere recombination K3556_01820 PF03481 Putative GTP-binding controlling metal-binding K3556_01825 PF02622 Uncharacterized ACR, COG1678 K3556_01840 PF01903 CbiX K3556_01845 PF02570 Precorrin-8X methylmutase K3556_01850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3556_01855 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3556_01860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3556_01865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3556_01870 PF00875 DNA photolyase K3556_01870 PF03441 FAD binding domain of DNA photolyase K3556_01885 PF00155 Aminotransferase class I and II K3556_01890 PF01327 Polypeptide deformylase K3556_01895 PF01327 Polypeptide deformylase K3556_01900 PF00551 Formyl transferase K3556_01900 PF02911 Formyl transferase, C-terminal domain K3556_01915 PF00075 RNase H K3556_01925 PF02401 LytB protein K3556_01935 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K3556_01940 PF01192 RNA polymerase Rpb6 K3556_01945 PF13291 ACT domain K3556_01945 PF02824 TGS domain K3556_01945 PF04607 Region found in RelA / SpoT proteins K3556_01955 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ K3556_01960 PF01810 LysE type translocator K3556_01965 PF01648 4'-phosphopantetheinyl transferase superfamily K3556_01970 PF10502 Signal peptidase, peptidase S26 K3556_01975 PF14622 Ribonuclease-III-like K3556_01975 PF00035 Double-stranded RNA binding motif K3556_01980 PF07650 KH domain K3556_01980 PF01926 50S ribosome-binding GTPase K3556_01990 PF02565 Recombination protein O C terminal K3556_01990 PF11967 Recombination protein O N terminal K3556_02005 PF02770 Acyl-CoA dehydrogenase, middle domain K3556_02005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3556_02005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3556_02015 PF01293 Phosphoenolpyruvate carboxykinase K3556_02020 PF00072 Response regulator receiver domain K3556_02020 PF00486 Transcriptional regulatory protein, C terminal K3556_02025 PF00672 HAMP domain K3556_02025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_02025 PF00512 His Kinase A (phospho-acceptor) domain K3556_02025 PF13755 Sensor N-terminal transmembrane domain K3556_02025 PF13756 Stimulus-sensing domain K3556_02035 PF03668 P-loop ATPase protein family K3556_02045 PF00381 PTS HPr component phosphorylation site K3556_02055 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K3556_02055 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K3556_02065 PF00766 Electron transfer flavoprotein FAD-binding domain K3556_02065 PF01012 Electron transfer flavoprotein domain K3556_02070 PF01012 Electron transfer flavoprotein domain K3556_02075 PF01923 Cobalamin adenosyltransferase K3556_02085 PF00106 short chain dehydrogenase K3556_02095 PF03989 DNA gyrase C-terminal domain, beta-propeller K3556_02095 PF00521 DNA gyrase/topoisomerase IV, subunit A K3556_02105 PF01435 Peptidase family M48 K3556_02110 PF00009 Elongation factor Tu GTP binding domain K3556_02110 PF03144 Elongation factor Tu domain 2 K3556_02110 PF03143 Elongation factor Tu C-terminal domain K3556_02130 PF00584 SecE/Sec61-gamma subunits of protein translocation complex K3556_02135 PF00467 KOW motif K3556_02135 PF02357 Transcription termination factor nusG K3556_02140 PF03946 Ribosomal protein L11, N-terminal domain K3556_02140 PF00298 Ribosomal protein L11, RNA binding domain K3556_02145 PF00687 Ribosomal protein L1p/L10e family K3556_02150 PF00132 Bacterial transferase hexapeptide (six repeats) K3556_02165 PF00466 Ribosomal protein L10 K3556_02170 PF00542 Ribosomal protein L7/L12 C-terminal domain K3556_02170 PF16320 Ribosomal protein L7/L12 dimerisation domain K3556_02175 PF00562 RNA polymerase Rpb2, domain 6 K3556_02175 PF10385 RNA polymerase beta subunit external 1 domain K3556_02175 PF04565 RNA polymerase Rpb2, domain 3 K3556_02175 PF04560 RNA polymerase Rpb2, domain 7 K3556_02175 PF04563 RNA polymerase beta subunit K3556_02175 PF04561 RNA polymerase Rpb2, domain 2 K3556_02180 PF05000 RNA polymerase Rpb1, domain 4 K3556_02180 PF04983 RNA polymerase Rpb1, domain 3 K3556_02180 PF00623 RNA polymerase Rpb1, domain 2 K3556_02180 PF04998 RNA polymerase Rpb1, domain 5 K3556_02180 PF04997 RNA polymerase Rpb1, domain 1 K3556_02185 PF00892 EamA-like transporter family K3556_02190 PF00164 Ribosomal protein S12/S23 K3556_02195 PF00177 Ribosomal protein S7p/S5e K3556_02200 PF00679 Elongation factor G C-terminus K3556_02200 PF14492 Elongation Factor G, domain II K3556_02200 PF03764 Elongation factor G, domain IV K3556_02200 PF00009 Elongation factor Tu GTP binding domain K3556_02200 PF03144 Elongation factor Tu domain 2 K3556_02205 PF03143 Elongation factor Tu C-terminal domain K3556_02205 PF03144 Elongation factor Tu domain 2 K3556_02205 PF00009 Elongation factor Tu GTP binding domain K3556_02215 PF00338 Ribosomal protein S10p/S20e K3556_02220 PF00297 Ribosomal protein L3 K3556_02225 PF00573 Ribosomal protein L4/L1 family K3556_02230 PF00276 Ribosomal protein L23 K3556_02260 PF00181 Ribosomal Proteins L2, RNA binding domain K3556_02260 PF03947 Ribosomal Proteins L2, C-terminal domain K3556_02265 PF00203 Ribosomal protein S19 K3556_02270 PF00237 Ribosomal protein L22p/L17e K3556_02275 PF07650 KH domain K3556_02275 PF00189 Ribosomal protein S3, C-terminal domain K3556_02280 PF00252 Ribosomal protein L16p/L10e K3556_02305 PF00210 Ferritin-like domain K3556_02310 PF00831 Ribosomal L29 protein K3556_02315 PF00366 Ribosomal protein S17 K3556_02320 PF00238 Ribosomal protein L14p/L23e K3556_02325 PF00467 KOW motif K3556_02325 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 K3556_02330 PF00281 Ribosomal protein L5 K3556_02330 PF00673 ribosomal L5P family C-terminus K3556_02335 PF00253 Ribosomal protein S14p/S29e K3556_02340 PF00410 Ribosomal protein S8 K3556_02345 PF00347 Ribosomal protein L6 K3556_02350 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast K3556_02355 PF03719 Ribosomal protein S5, C-terminal domain K3556_02355 PF00333 Ribosomal protein S5, N-terminal domain K3556_02360 PF00327 Ribosomal protein L30p/L7e K3556_02375 PF00892 EamA-like transporter family K3556_02380 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A K3556_02385 PF00344 SecY translocase K3556_02390 PF05191 Adenylate kinase, active site lid K3556_02395 PF00416 Ribosomal protein S13/S18 K3556_02400 PF00411 Ribosomal protein S11 K3556_02405 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain K3556_02405 PF01000 RNA polymerase Rpb3/RpoA insert domain K3556_02405 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain K3556_02410 PF01196 Ribosomal protein L17 K3556_02420 PF16193 AAA C-terminal domain K3556_02420 PF12002 MgsA AAA+ ATPase C terminal K3556_02420 PF00004 ATPase family associated with various cellular activities (AAA) K3556_02425 PF02537 CrcB-like protein, Camphor Resistance (CrcB) K3556_02430 PF00849 RNA pseudouridylate synthase K3556_02430 PF01479 S4 domain K3556_02435 PF13419 Haloacid dehalogenase-like hydrolase K3556_02445 PF00497 Bacterial extracellular solute-binding proteins, family 3 K3556_02450 PF00528 Binding-protein-dependent transport system inner membrane component K3556_02455 PF00528 Binding-protein-dependent transport system inner membrane component K3556_02460 PF00005 ABC transporter K3556_02485 PF00696 Amino acid kinase family K3556_02495 PF01926 50S ribosome-binding GTPase K3556_02505 PF02096 60Kd inner membrane protein K3556_02505 PF14849 YidC periplasmic domain K3556_02510 PF00563 EAL domain K3556_02510 PF13185 GAF domain K3556_02510 PF00990 Diguanylate cyclase, GGDEF domain K3556_02515 PF01171 PP-loop family K3556_02530 PF01809 Putative membrane protein insertion efficiency factor K3556_02535 PF00825 Ribonuclease P K3556_02540 PF00468 Ribosomal protein L34 K3556_02550 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_02550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K3556_02555 PF00672 HAMP domain K3556_02555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_02555 PF00512 His Kinase A (phospho-acceptor) domain K3556_02555 PF13426 PAS domain K3556_02560 PF12838 4Fe-4S dicluster domain K3556_02560 PF13486 Reductive dehalogenase subunit K3556_02565 PF16347 Domain of unknown function (DUF4976) K3556_02565 PF00884 Sulfatase K3556_02575 PF06253 Trimethylamine methyltransferase (MTTB) K3556_02580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K3556_02590 PF13488 Glycine zipper K3556_02590 PF00691 OmpA family K3556_02595 PF01040 UbiA prenyltransferase family K3556_02600 PF04452 RNA methyltransferase K3556_02630 PF01565 FAD binding domain K3556_02630 PF02913 FAD linked oxidases, C-terminal domain K3556_02635 PF02782 FGGY family of carbohydrate kinases, C-terminal domain K3556_02635 PF00370 FGGY family of carbohydrate kinases, N-terminal domain K3556_02645 PF09186 Domain of unknown function (DUF1949) K3556_02645 PF01205 Uncharacterized protein family UPF0029 K3556_02655 PF00265 Thymidine kinase K3556_02660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K3556_02660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3556_02665 PF01588 Putative tRNA binding domain K3556_02670 PF03807 NADP oxidoreductase coenzyme F420-dependent K3556_02670 PF14748 Pyrroline-5-carboxylate reductase dimerisation K3556_02680 PF02687 FtsX-like permease family K3556_02680 PF12704 MacB-like periplasmic core domain K3556_02685 PF00005 ABC transporter K3556_02695 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3556_02695 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP K3556_02705 PF00204 DNA gyrase B K3556_02705 PF00986 DNA gyrase B subunit, carboxyl terminus K3556_02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_02705 PF01751 Toprim domain K3556_02715 PF01416 tRNA pseudouridine synthase K3556_02720 PF04317 YcjX-like family, DUF463 K3556_02725 PF00583 Acetyltransferase (GNAT) family K3556_02730 PF05128 Domain of unknown function (DUF697) K3556_02740 PF08264 Anticodon-binding domain of tRNA K3556_02740 PF00133 tRNA synthetases class I (I, L, M and V) K3556_02750 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K3556_02750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K3556_02755 PF00005 ABC transporter K3556_02760 PF01061 ABC-2 type transporter K3556_02765 PF06965 Na+/H+ antiporter 1 K3556_02765 PF01343 Peptidase family S49 K3556_02770 PF01699 Sodium/calcium exchanger protein K3556_02780 PF01541 GIY-YIG catalytic domain K3556_02780 PF12826 Helix-hairpin-helix motif K3556_02780 PF02151 UvrB/uvrC motif K3556_02780 PF08459 UvrC Helix-hairpin-helix N-terminal K3556_02785 PF01066 CDP-alcohol phosphatidyltransferase K3556_02795 PF02391 MoaE protein K3556_02800 PF01066 CDP-alcohol phosphatidyltransferase K3556_02805 PF00589 Phage integrase family K3556_02805 PF02899 Phage integrase, N-terminal SAM-like domain K3556_02815 PF00923 Transaldolase/Fructose-6-phosphate aldolase K3556_02820 PF18319 PriA DNA helicase Cys-rich region (CRR) domain K3556_02820 PF18074 Primosomal protein N C-terminal domain K3556_02820 PF17764 3′ DNA-binding domain (3′BD) K3556_02820 PF00270 DEAD/DEAH box helicase K3556_02835 PF04143 Sulphur transport K3556_02855 PF00111 2Fe-2S iron-sulfur cluster binding domain K3556_02865 PF02844 Phosphoribosylglycinamide synthetase, N domain K3556_02865 PF02843 Phosphoribosylglycinamide synthetase, C domain K3556_02865 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K3556_02875 PF13742 OB-fold nucleic acid binding domain K3556_02875 PF02601 Exonuclease VII, large subunit K3556_02880 PF00849 RNA pseudouridylate synthase K3556_02880 PF01479 S4 domain K3556_02885 PF14437 MafB19-like deaminase K3556_02895 PF02686 Glu-tRNAGln amidotransferase C subunit K3556_02900 PF01425 Amidase K3556_02910 PF01510 N-acetylmuramoyl-L-alanine amidase K3556_02920 PF00471 Ribosomal protein L33 K3556_02930 PF01027 Inhibitor of apoptosis-promoting Bax1 K3556_02940 PF03466 LysR substrate binding domain K3556_02940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_02945 PF14765 Polyketide synthase dehydratase K3556_02945 PF08659 KR domain K3556_02945 PF00109 Beta-ketoacyl synthase, N-terminal domain K3556_02945 PF00550 Phosphopantetheine attachment site K3556_02945 PF16197 Ketoacyl-synthetase C-terminal extension K3556_02945 PF02801 Beta-ketoacyl synthase, C-terminal domain K3556_02945 PF00698 Acyl transferase domain K3556_02945 PF08240 Alcohol dehydrogenase GroES-like domain K3556_02950 PF01381 Helix-turn-helix K3556_02955 PF00459 Inositol monophosphatase family K3556_02960 PF01979 Amidohydrolase family K3556_02970 PF01979 Amidohydrolase family K3556_02975 PF03448 MgtE intracellular N domain K3556_02975 PF01769 Divalent cation transporter K3556_02975 PF00571 CBS domain K3556_02980 PF01812 5-formyltetrahydrofolate cyclo-ligase family K3556_02985 PF13277 YmdB-like protein K3556_02990 PF03600 Citrate transporter K3556_02990 PF02080 TrkA-C domain K3556_02995 PF03600 Citrate transporter K3556_02995 PF02080 TrkA-C domain K3556_03005 PF01037 Lrp/AsnC ligand binding domain K3556_03010 PF01709 Transcriptional regulator K3556_03015 PF00892 EamA-like transporter family K3556_03020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3556_03025 PF02548 Ketopantoate hydroxymethyltransferase K3556_03030 PF02569 Pantoate-beta-alanine ligase K3556_03035 PF07687 Peptidase dimerisation domain K3556_03035 PF01546 Peptidase family M20/M25/M40 K3556_03075 PF07509 Protein of unknown function (DUF1523) K3556_03080 PF00171 Aldehyde dehydrogenase family K3556_03085 PF01791 DeoC/LacD family aldolase K3556_03090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3556_03095 PF00528 Binding-protein-dependent transport system inner membrane component K3556_03100 PF00528 Binding-protein-dependent transport system inner membrane component K3556_03100 PF12911 N-terminal TM domain of oligopeptide transport permease C K3556_03105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3556_03105 PF00005 ABC transporter K3556_03110 PF00005 ABC transporter K3556_03110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3556_03120 PF00403 Heavy-metal-associated domain K3556_03125 PF00376 MerR family regulatory protein K3556_03125 PF09278 MerR, DNA binding K3556_03130 PF13607 Succinyl-CoA ligase like flavodoxin domain K3556_03130 PF13380 CoA binding domain K3556_03130 PF00583 Acetyltransferase (GNAT) family K3556_03135 PF00850 Histone deacetylase domain K3556_03140 PF01266 FAD dependent oxidoreductase K3556_03150 PF02608 ABC transporter substrate-binding protein PnrA-like K3556_03155 PF00027 Cyclic nucleotide-binding domain K3556_03155 PF00520 Ion transport protein K3556_03160 PF02653 Branched-chain amino acid transport system / permease component K3556_03165 PF02653 Branched-chain amino acid transport system / permease component K3556_03170 PF00005 ABC transporter K3556_03180 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K3556_03180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase K3556_03185 PF00111 2Fe-2S iron-sulfur cluster binding domain K3556_03185 PF01799 [2Fe-2S] binding domain K3556_03195 PF14579 Helix-hairpin-helix motif K3556_03195 PF02811 PHP domain K3556_03195 PF07733 Bacterial DNA polymerase III alpha NTPase domain K3556_03195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K3556_03200 PF00550 Phosphopantetheine attachment site K3556_03205 PF04102 SlyX K3556_03210 PF03129 Anticodon binding domain K3556_03210 PF13393 Histidyl-tRNA synthetase K3556_03215 PF13393 Histidyl-tRNA synthetase K3556_03220 PF01634 ATP phosphoribosyltransferase K3556_03245 PF00579 tRNA synthetases class I (W and Y) K3556_03255 PF03023 Lipid II flippase MurJ K3556_03260 PF01966 HD domain K3556_03260 PF08335 GlnD PII-uridylyltransferase K3556_03270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3556_03275 PF02021 Uncharacterised protein family UPF0102 K3556_03280 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain K3556_03280 PF02951 Prokaryotic glutathione synthetase, N-terminal domain K3556_03285 PF07859 alpha/beta hydrolase fold K3556_03290 PF01078 Magnesium chelatase, subunit ChlI K3556_03290 PF13335 Magnesium chelatase, subunit ChlI C-terminal K3556_03305 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase K3556_03315 PF02441 Flavoprotein K3556_03315 PF04127 DNA / pantothenate metabolism flavoprotein K3556_03320 PF00692 dUTPase K3556_03325 PF00899 ThiF family K3556_03335 PF01432 Peptidase family M3 K3556_03340 PF01545 Cation efflux family K3556_03340 PF16916 Dimerisation domain of Zinc Transporter K3556_03350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K3556_03350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3556_03365 PF01571 Aminomethyltransferase folate-binding domain K3556_03365 PF01266 FAD dependent oxidoreductase K3556_03365 PF16350 FAD dependent oxidoreductase central domain K3556_03365 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_03375 PF00085 Thioredoxin K3556_03390 PF00491 Arginase family K3556_03395 PF02423 Ornithine cyclodeaminase/mu-crystallin family K3556_03400 PF02347 Glycine cleavage system P-protein K3556_03405 PF01597 Glycine cleavage H-protein K3556_03410 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_03410 PF01571 Aminomethyltransferase folate-binding domain K3556_03420 PF01554 MatE K3556_03430 PF00749 tRNA synthetases class I (E and Q), catalytic domain K3556_03445 PF16123 Hydroxyacylglutathione hydrolase C-terminus K3556_03445 PF00753 Metallo-beta-lactamase superfamily K3556_03450 PF00795 Carbon-nitrogen hydrolase K3556_03450 PF02540 NAD synthase K3556_03460 PF00682 HMGL-like K3556_03460 PF08502 LeuA allosteric (dimerisation) domain K3556_03465 PF07690 Major Facilitator Superfamily K3556_03475 PF04085 rod shape-determining protein MreC K3556_03485 PF03717 Penicillin-binding Protein dimerisation domain K3556_03485 PF00905 Penicillin binding protein transpeptidase domain K3556_03490 PF01098 Cell cycle protein K3556_03495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3556_03500 PF02580 D-Tyr-tRNA(Tyr) deacylase K3556_03505 PF00881 Nitroreductase family K3556_03525 PF05816 Toxic anion resistance protein (TelA) K3556_03535 PF00487 Fatty acid desaturase K3556_03540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit K3556_03540 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K3556_03540 PF10531 SLBB domain K3556_03550 PF00448 SRP54-type protein, GTPase domain K3556_03550 PF02881 SRP54-type protein, helical bundle domain K3556_03560 PF04279 Intracellular septation protein A K3556_03565 PF00043 Glutathione S-transferase, C-terminal domain K3556_03565 PF02798 Glutathione S-transferase, N-terminal domain K3556_03570 PF01053 Cys/Met metabolism PLP-dependent enzyme K3556_03575 PF02649 Type I GTP cyclohydrolase folE2 K3556_03585 PF02386 Cation transport protein K3556_03595 PF02091 Glycyl-tRNA synthetase alpha subunit K3556_03605 PF05746 DALR anticodon binding domain K3556_03605 PF02092 Glycyl-tRNA synthetase beta subunit K3556_03610 PF02896 PEP-utilising enzyme, TIM barrel domain K3556_03610 PF00391 PEP-utilising enzyme, mobile domain K3556_03610 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K3556_03620 PF02152 Dihydroneopterin aldolase K3556_03625 PF00809 Pterin binding enzyme K3556_03630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K3556_03630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K3556_03630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K3556_03630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K3556_03645 PF01022 Bacterial regulatory protein, arsR family K3556_03655 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain K3556_03655 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain K3556_03680 PF01494 FAD binding domain K3556_03690 PF07729 FCD domain K3556_03690 PF00392 Bacterial regulatory proteins, gntR family K3556_03700 PF00117 Glutamine amidotransferase class-I K3556_03700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain K3556_03725 PF00115 Cytochrome C and Quinol oxidase polypeptide I K3556_03735 PF03099 Biotin/lipoate A/B protein ligase family K3556_03745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_03745 PF03466 LysR substrate binding domain K3556_03755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_03755 PF03466 LysR substrate binding domain K3556_03760 PF00141 Peroxidase K3556_03765 PF01070 FMN-dependent dehydrogenase K3556_03770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3556_03770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3556_03780 PF00582 Universal stress protein family K3556_03785 PF00107 Zinc-binding dehydrogenase K3556_03785 PF08240 Alcohol dehydrogenase GroES-like domain K3556_03795 PF00815 Histidinol dehydrogenase K3556_03800 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_03800 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K3556_03805 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K3556_03810 PF03480 Bacterial extracellular solute-binding protein, family 7 K3556_03820 PF00356 Bacterial regulatory proteins, lacI family K3556_03825 PF05161 MOFRL family K3556_03825 PF13660 Domain of unknown function (DUF4147) K3556_03830 PF02525 Flavodoxin-like fold K3556_03845 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K3556_03850 PF00119 ATP synthase A chain K3556_03855 PF00137 ATP synthase subunit C K3556_03860 PF00430 ATP synthase B/B' CF(0) K3556_03865 PF00430 ATP synthase B/B' CF(0) K3556_03870 PF00392 Bacterial regulatory proteins, gntR family K3556_03870 PF07729 FCD domain K3556_03875 PF00223 Photosystem I psaA/psaB protein K3556_03875 PF00691 OmpA family K3556_03880 PF02805 Metal binding domain of Ada K3556_03880 PF12833 Helix-turn-helix domain K3556_03880 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K3556_03880 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K3556_03885 PF10576 Iron-sulfur binding domain of endonuclease III K3556_03885 PF00633 Helix-hairpin-helix motif K3556_03885 PF00730 HhH-GPD superfamily base excision DNA repair protein K3556_03890 PF00294 pfkB family carbohydrate kinase K3556_03905 PF01230 HIT domain K3556_03915 PF00476 DNA polymerase family A K3556_03915 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain K3556_03915 PF01612 3'-5' exonuclease K3556_03915 PF01367 5'-3' exonuclease, C-terminal SAM fold K3556_03935 PF00005 ABC transporter K3556_03935 PF00571 CBS domain K3556_03940 PF00528 Binding-protein-dependent transport system inner membrane component K3556_03945 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K3556_03950 PF13977 BetI-type transcriptional repressor, C-terminal K3556_03950 PF00440 Bacterial regulatory proteins, tetR family K3556_03955 PF00884 Sulfatase K3556_03955 PF12411 Choline sulfatase enzyme C terminal K3556_03960 PF05199 GMC oxidoreductase K3556_03960 PF00732 GMC oxidoreductase K3556_03975 PF01381 Helix-turn-helix K3556_03975 PF06114 IrrE N-terminal-like domain K3556_03975 PF09856 Predicted transcriptional regulator (DUF2083) K3556_03980 PF07690 Major Facilitator Superfamily K3556_03985 PF01039 Carboxyl transferase domain K3556_04005 PF00289 Biotin carboxylase, N-terminal domain K3556_04005 PF02785 Biotin carboxylase C-terminal domain K3556_04005 PF00364 Biotin-requiring enzyme K3556_04005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3556_04005 PF18140 Propionyl-coenzyme A carboxylase BT domain K3556_04020 PF02310 B12 binding domain K3556_04020 PF01642 Methylmalonyl-CoA mutase K3556_04035 PF00226 DnaJ domain K3556_04035 PF05099 Tellurite resistance protein TerB K3556_04050 PF02541 Ppx/GppA phosphatase family K3556_04055 PF13089 Polyphosphate kinase N-terminal domain K3556_04055 PF13090 Polyphosphate kinase C-terminal domain 2 K3556_04055 PF17941 Polyphosphate kinase C-terminal domain 1 K3556_04055 PF02503 Polyphosphate kinase middle domain K3556_04065 PF01594 AI-2E family transporter K3556_04075 PF03129 Anticodon binding domain K3556_04075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K3556_04090 PF02222 ATP-grasp domain K3556_04090 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain K3556_04095 PF00731 AIR carboxylase K3556_04105 PF00011 Hsp20/alpha crystallin family K3556_04115 PF01747 ATP-sulfurylase K3556_04115 PF14306 PUA-like domain K3556_04125 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_04130 PF01037 Lrp/AsnC ligand binding domain K3556_04135 PF02578 Multi-copper polyphenol oxidoreductase laccase K3556_04145 PF01790 Prolipoprotein diacylglyceryl transferase K3556_04165 PF03167 Uracil DNA glycosylase superfamily K3556_04180 PF06965 Na+/H+ antiporter 1 K3556_04185 PF00005 ABC transporter K3556_04195 PF00793 DAHP synthetase I family K3556_04200 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K3556_04200 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K3556_04200 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K3556_04200 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K3556_04215 PF04909 Amidohydrolase K3556_04225 PF03459 TOBE domain K3556_04225 PF17912 MalK OB fold domain K3556_04225 PF00005 ABC transporter K3556_04235 PF00528 Binding-protein-dependent transport system inner membrane component K3556_04240 PF00528 Binding-protein-dependent transport system inner membrane component K3556_04250 PF05199 GMC oxidoreductase K3556_04250 PF00732 GMC oxidoreductase K3556_04260 PF00815 Histidinol dehydrogenase K3556_04275 PF00356 Bacterial regulatory proteins, lacI family K3556_04295 PF00561 alpha/beta hydrolase fold K3556_04295 PF08386 TAP-like protein K3556_04305 PF01329 Pterin 4 alpha carbinolamine dehydratase K3556_04335 PF00072 Response regulator receiver domain K3556_04335 PF00196 Bacterial regulatory proteins, luxR family K3556_04340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_04340 PF03466 LysR substrate binding domain K3556_04350 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase K3556_04370 PF01522 Polysaccharide deacetylase K3556_04380 PF00005 ABC transporter K3556_04385 PF02653 Branched-chain amino acid transport system / permease component K3556_04395 PF00356 Bacterial regulatory proteins, lacI family K3556_04400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K3556_04400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K3556_04410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K3556_04410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K3556_04415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3556_04415 PF00205 Thiamine pyrophosphate enzyme, central domain K3556_04415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3556_04420 PF00294 pfkB family carbohydrate kinase K3556_04425 PF04962 KduI/IolB family K3556_04430 PF01116 Fructose-bisphosphate aldolase class-II K3556_04435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K3556_04435 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K3556_04450 PF05199 GMC oxidoreductase K3556_04450 PF00732 GMC oxidoreductase K3556_04475 PF00535 Glycosyl transferase family 2 K3556_04490 PF00072 Response regulator receiver domain K3556_04490 PF00486 Transcriptional regulatory protein, C terminal K3556_04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_04495 PF00512 His Kinase A (phospho-acceptor) domain K3556_04500 PF12838 4Fe-4S dicluster domain K3556_04500 PF00037 4Fe-4S binding domain K3556_04510 PF00384 Molybdopterin oxidoreductase K3556_04510 PF01568 Molydopterin dinucleotide binding domain K3556_04510 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K3556_04515 PF12800 4Fe-4S binding domain K3556_04515 PF12838 4Fe-4S dicluster domain K3556_04520 PF13237 4Fe-4S dicluster domain K3556_04520 PF12801 4Fe-4S binding domain K3556_04525 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) K3556_04530 PF03264 NapC/NirT cytochrome c family, N-terminal region K3556_04535 PF09084 NMT1/THI5 like K3556_04540 PF00528 Binding-protein-dependent transport system inner membrane component K3556_04545 PF00528 Binding-protein-dependent transport system inner membrane component K3556_04550 PF00005 ABC transporter K3556_04555 PF01979 Amidohydrolase family K3556_04560 PF01546 Peptidase family M20/M25/M40 K3556_04560 PF07687 Peptidase dimerisation domain K3556_04565 PF08362 YcdC-like protein, C-terminal region K3556_04565 PF00440 Bacterial regulatory proteins, tetR family K3556_04570 PF08362 YcdC-like protein, C-terminal region K3556_04570 PF00440 Bacterial regulatory proteins, tetR family K3556_04580 PF01180 Dihydroorotate dehydrogenase K3556_04585 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K3556_04585 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_04590 PF01266 FAD dependent oxidoreductase K3556_04590 PF16901 C-terminal domain of alpha-glycerophosphate oxidase K3556_04595 PF08220 DeoR-like helix-turn-helix domain K3556_04595 PF00455 DeoR C terminal sensor domain K3556_04600 PF01799 [2Fe-2S] binding domain K3556_04600 PF00111 2Fe-2S iron-sulfur cluster binding domain K3556_04605 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase K3556_04610 PF00271 Helicase conserved C-terminal domain K3556_04610 PF04851 Type III restriction enzyme, res subunit K3556_04610 PF02151 UvrB/uvrC motif K3556_04610 PF12344 Ultra-violet resistance protein B K3556_04610 PF17757 UvrB interaction domain K3556_04630 PF00464 Serine hydroxymethyltransferase K3556_04635 PF01513 ATP-NAD kinase K3556_04640 PF02954 Bacterial regulatory protein, Fis family K3556_04640 PF00072 Response regulator receiver domain K3556_04640 PF00158 Sigma-54 interaction domain K3556_04645 PF00501 AMP-binding enzyme K3556_04645 PF16177 Acetyl-coenzyme A synthetase N-terminus K3556_04645 PF13193 AMP-binding enzyme C-terminal domain K3556_04650 PF01515 Phosphate acetyl/butaryl transferase K3556_04650 PF00390 Malic enzyme, N-terminal domain K3556_04650 PF03949 Malic enzyme, NAD binding domain K3556_04655 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K3556_04660 PF01676 Metalloenzyme superfamily K3556_04665 PF00962 Adenosine/AMP deaminase K3556_04680 PF00501 AMP-binding enzyme K3556_04680 PF13193 AMP-binding enzyme C-terminal domain K3556_04685 PF00892 EamA-like transporter family K3556_04695 PF00378 Enoyl-CoA hydratase/isomerase K3556_04695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K3556_04695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K3556_04705 PF00108 Thiolase, N-terminal domain K3556_04705 PF02803 Thiolase, C-terminal domain K3556_04710 PF02798 Glutathione S-transferase, N-terminal domain K3556_04720 PF12806 Acetyl-CoA dehydrogenase C-terminal like K3556_04720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3556_04720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3556_04720 PF02770 Acyl-CoA dehydrogenase, middle domain K3556_04725 PF00376 MerR family regulatory protein K3556_04725 PF09278 MerR, DNA binding K3556_04730 PF00376 MerR family regulatory protein K3556_04730 PF09278 MerR, DNA binding K3556_04750 PF01554 MatE K3556_04755 PF03960 ArsC family K3556_04760 PF01180 Dihydroorotate dehydrogenase K3556_04770 PF00149 Calcineurin-like phosphoesterase K3556_04770 PF02872 5'-nucleotidase, C-terminal domain K3556_04775 PF03358 NADPH-dependent FMN reductase K3556_04780 PF02586 SOS response associated peptidase (SRAP) K3556_04785 PF00501 AMP-binding enzyme K3556_04785 PF13193 AMP-binding enzyme C-terminal domain K3556_04790 PF01266 FAD dependent oxidoreductase K3556_04795 PF00120 Glutamine synthetase, catalytic domain K3556_04800 PF00528 Binding-protein-dependent transport system inner membrane component K3556_04805 PF00528 Binding-protein-dependent transport system inner membrane component K3556_04810 PF00005 ABC transporter K3556_04810 PF08402 TOBE domain K3556_04815 PF13416 Bacterial extracellular solute-binding protein K3556_04825 PF00202 Aminotransferase class-III K3556_04830 PF01266 FAD dependent oxidoreductase K3556_04835 PF00005 ABC transporter K3556_04835 PF03459 TOBE domain K3556_04840 PF00528 Binding-protein-dependent transport system inner membrane component K3556_04850 PF01625 Peptide methionine sulfoxide reductase K3556_04855 PF01641 SelR domain K3556_04870 PF02321 Outer membrane efflux protein K3556_04880 PF07685 CobB/CobQ-like glutamine amidotransferase domain K3556_04890 PF01132 Elongation factor P (EF-P) OB domain K3556_04890 PF08207 Elongation factor P (EF-P) KOW-like domain K3556_04890 PF09285 Elongation factor P, C-terminal K3556_04895 PF00849 RNA pseudouridylate synthase K3556_04900 PF01571 Aminomethyltransferase folate-binding domain K3556_04905 PF00664 ABC transporter transmembrane region K3556_04905 PF00005 ABC transporter K3556_04915 PF00266 Aminotransferase class-V K3556_04920 PF00155 Aminotransferase class I and II K3556_04930 PF08264 Anticodon-binding domain of tRNA K3556_04930 PF00133 tRNA synthetases class I (I, L, M and V) K3556_04930 PF10458 Valyl tRNA synthetase tRNA binding arm K3556_04940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K3556_04940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K3556_04940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K3556_04940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K3556_04945 PF01037 Lrp/AsnC ligand binding domain K3556_04945 PF13404 AsnC-type helix-turn-helix domain K3556_04955 PF02219 Methylenetetrahydrofolate reductase K3556_04960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_04960 PF03466 LysR substrate binding domain K3556_04965 PF00459 Inositol monophosphatase family K3556_04980 PF18327 Proline utilization A proline dehydrogenase N-terminal domain K3556_04980 PF00171 Aldehyde dehydrogenase family K3556_04980 PF01619 Proline dehydrogenase K3556_04980 PF14850 DNA-binding domain of Proline dehydrogenase K3556_04985 PF01037 Lrp/AsnC ligand binding domain K3556_05000 PF01926 50S ribosome-binding GTPase K3556_05000 PF06071 Protein of unknown function (DUF933) K3556_05010 PF00290 Tryptophan synthase alpha chain K3556_05015 PF01266 FAD dependent oxidoreductase K3556_05020 PF03459 TOBE domain K3556_05020 PF00005 ABC transporter K3556_05020 PF10649 Protein of unknown function (DUF2478) K3556_05030 PF06123 Inner membrane protein CreD K3556_05035 PF01740 STAS domain K3556_05035 PF00916 Sulfate permease family K3556_05040 PF01048 Phosphorylase superfamily K3556_05050 PF02310 B12 binding domain K3556_05050 PF01642 Methylmalonyl-CoA mutase K3556_05055 PF01553 Acyltransferase K3556_05060 PF08240 Alcohol dehydrogenase GroES-like domain K3556_05060 PF00107 Zinc-binding dehydrogenase K3556_05070 PF03472 Autoinducer binding domain K3556_05070 PF00196 Bacterial regulatory proteins, luxR family K3556_05090 PF01925 Sulfite exporter TauE/SafE K3556_05095 PF01048 Phosphorylase superfamily K3556_05100 PF02653 Branched-chain amino acid transport system / permease component K3556_05105 PF02653 Branched-chain amino acid transport system / permease component K3556_05110 PF00005 ABC transporter K3556_05115 PF02608 ABC transporter substrate-binding protein PnrA-like K3556_05125 PF00814 Glycoprotease family K3556_05130 PF01106 NifU-like domain K3556_05145 PF01063 Amino-transferase class IV K3556_05155 PF03477 ATP cone domain K3556_05155 PF02867 Ribonucleotide reductase, barrel domain K3556_05155 PF00317 Ribonucleotide reductase, all-alpha domain K3556_05160 PF00027 Cyclic nucleotide-binding domain K3556_05160 PF13545 Crp-like helix-turn-helix domain K3556_05165 PF00999 Sodium/hydrogen exchanger family K3556_05165 PF02254 TrkA-N domain K3556_05175 PF01266 FAD dependent oxidoreductase K3556_05180 PF04267 Sarcosine oxidase, delta subunit family K3556_05185 PF17806 Sarcosine oxidase A3 domain K3556_05185 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_05185 PF01571 Aminomethyltransferase folate-binding domain K3556_05185 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_05195 PF01965 DJ-1/PfpI family K3556_05195 PF12833 Helix-turn-helix domain K3556_05205 PF00171 Aldehyde dehydrogenase family K3556_05225 PF02615 Malate/L-lactate dehydrogenase K3556_05230 PF02028 BCCT, betaine/carnitine/choline family transporter K3556_05235 PF00005 ABC transporter K3556_05240 PF00528 Binding-protein-dependent transport system inner membrane component K3556_05245 PF00497 Bacterial extracellular solute-binding proteins, family 3 K3556_05250 PF00529 HlyD membrane-fusion protein of T1SS K3556_05255 PF00664 ABC transporter transmembrane region K3556_05255 PF00005 ABC transporter K3556_05260 PF00149 Calcineurin-like phosphoesterase K3556_05265 PF01321 Creatinase/Prolidase N-terminal domain K3556_05265 PF00557 Metallopeptidase family M24 K3556_05270 PF00005 ABC transporter K3556_05270 PF08402 TOBE domain K3556_05280 PF00528 Binding-protein-dependent transport system inner membrane component K3556_05285 PF00528 Binding-protein-dependent transport system inner membrane component K3556_05290 PF00574 Clp protease K3556_05295 PF07724 AAA domain (Cdc48 subfamily) K3556_05295 PF06689 ClpX C4-type zinc finger K3556_05295 PF10431 C-terminal, D2-small domain, of ClpB protein K3556_05305 PF02470 MlaD protein K3556_05315 PF03588 Leucyl/phenylalanyl-tRNA protein transferase K3556_05320 PF02785 Biotin carboxylase C-terminal domain K3556_05320 PF00289 Biotin carboxylase, N-terminal domain K3556_05320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3556_05325 PF00364 Biotin-requiring enzyme K3556_05345 PF01381 Helix-turn-helix K3556_05345 PF06114 IrrE N-terminal-like domain K3556_05345 PF09856 Predicted transcriptional regulator (DUF2083) K3556_05350 PF00486 Transcriptional regulatory protein, C terminal K3556_05350 PF00072 Response regulator receiver domain K3556_05360 PF00672 HAMP domain K3556_05360 PF14827 Double sensory domain of two-component sensor kinase K3556_05360 PF13426 PAS domain K3556_05360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_05360 PF00512 His Kinase A (phospho-acceptor) domain K3556_05370 PF01258 Prokaryotic dksA/traR C4-type zinc finger K3556_05380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K3556_05380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K3556_05380 PF00378 Enoyl-CoA hydratase/isomerase K3556_05390 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) K3556_05410 PF03466 LysR substrate binding domain K3556_05410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_05415 PF07286 Protein of unknown function (DUF1445) K3556_05430 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_05435 PF03746 LamB/YcsF family K3556_05445 PF02626 Carboxyltransferase domain, subdomain A and B K3556_05455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_05455 PF03466 LysR substrate binding domain K3556_05470 PF01575 MaoC like domain K3556_05470 PF00171 Aldehyde dehydrogenase family K3556_05480 PF00970 Oxidoreductase FAD-binding domain K3556_05480 PF00111 2Fe-2S iron-sulfur cluster binding domain K3556_05480 PF00175 Oxidoreductase NAD-binding domain K3556_05485 PF01883 Iron-sulfur cluster assembly protein K3556_05495 PF06243 Phenylacetic acid degradation B K3556_05500 PF05138 Phenylacetic acid catabolic protein K3556_05505 PF00108 Thiolase, N-terminal domain K3556_05505 PF02803 Thiolase, C-terminal domain K3556_05515 PF12706 Beta-lactamase superfamily domain K3556_05515 PF00753 Metallo-beta-lactamase superfamily K3556_05520 PF01026 TatD related DNase K3556_05525 PF09115 DNA polymerase III, delta subunit, C terminal K3556_05530 PF02223 Thymidylate kinase K3556_05535 PF07943 Penicillin-binding protein 5, C-terminal domain K3556_05535 PF00768 D-alanyl-D-alanine carboxypeptidase K3556_05565 PF01645 Conserved region in glutamate synthase K3556_05575 PF01209 ubiE/COQ5 methyltransferase family K3556_05595 PF00455 DeoR C terminal sensor domain K3556_05595 PF08220 DeoR-like helix-turn-helix domain K3556_05605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_05610 PF03480 Bacterial extracellular solute-binding protein, family 7 K3556_05620 PF03150 Di-haem cytochrome c peroxidase K3556_05625 PF00294 pfkB family carbohydrate kinase K3556_05630 PF01791 DeoC/LacD family aldolase K3556_05640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K3556_05640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K3556_05645 PF01263 Aldose 1-epimerase K3556_05650 PF00171 Aldehyde dehydrogenase family K3556_05655 PF02913 FAD linked oxidases, C-terminal domain K3556_05655 PF01565 FAD binding domain K3556_05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_05675 PF00196 Bacterial regulatory proteins, luxR family K3556_05675 PF00072 Response regulator receiver domain K3556_05690 PF00571 CBS domain K3556_05690 PF01769 Divalent cation transporter K3556_05690 PF03448 MgtE intracellular N domain K3556_05695 PF00202 Aminotransferase class-III K3556_05700 PF07883 Cupin domain K3556_05700 PF01381 Helix-turn-helix K3556_05705 PF00795 Carbon-nitrogen hydrolase K3556_05710 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain K3556_05710 PF01276 Orn/Lys/Arg decarboxylase, major domain K3556_05710 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain K3556_05725 PF03480 Bacterial extracellular solute-binding protein, family 7 K3556_05730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_05750 PF07556 Protein of unknown function (DUF1538) K3556_05755 PF07556 Protein of unknown function (DUF1538) K3556_05760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_05760 PF03466 LysR substrate binding domain K3556_05765 PF01244 Membrane dipeptidase (Peptidase family M19) K3556_05770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3556_05775 PF00528 Binding-protein-dependent transport system inner membrane component K3556_05780 PF00528 Binding-protein-dependent transport system inner membrane component K3556_05780 PF12911 N-terminal TM domain of oligopeptide transport permease C K3556_05785 PF00005 ABC transporter K3556_05785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3556_05790 PF00005 ABC transporter K3556_05790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3556_05795 PF00027 Cyclic nucleotide-binding domain K3556_05795 PF13302 Acetyltransferase (GNAT) domain K3556_05810 PF01047 MarR family K3556_05815 PF02515 CoA-transferase family III K3556_05820 PF07883 Cupin domain K3556_05820 PF01381 Helix-turn-helix K3556_05825 PF00202 Aminotransferase class-III K3556_05830 PF02770 Acyl-CoA dehydrogenase, middle domain K3556_05830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3556_05830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3556_05835 PF01297 Zinc-uptake complex component A periplasmic K3556_05840 PF01475 Ferric uptake regulator family K3556_05845 PF00005 ABC transporter K3556_05850 PF00950 ABC 3 transport family K3556_05855 PF01515 Phosphate acetyl/butaryl transferase K3556_05860 PF01515 Phosphate acetyl/butaryl transferase K3556_05865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3556_05865 PF00205 Thiamine pyrophosphate enzyme, central domain K3556_05865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3556_05870 PF00155 Aminotransferase class I and II K3556_05870 PF00392 Bacterial regulatory proteins, gntR family K3556_05885 PF00202 Aminotransferase class-III K3556_05890 PF00392 Bacterial regulatory proteins, gntR family K3556_05890 PF07729 FCD domain K3556_05895 PF02540 NAD synthase K3556_05895 PF00117 Glutamine amidotransferase class-I K3556_05895 PF00958 GMP synthase C terminal domain K3556_05900 PF00067 Cytochrome P450 K3556_05905 PF03951 Glutamine synthetase, beta-Grasp domain K3556_05905 PF00120 Glutamine synthetase, catalytic domain K3556_05910 PF00111 2Fe-2S iron-sulfur cluster binding domain K3556_05920 PF00202 Aminotransferase class-III K3556_05930 PF03401 Tripartite tricarboxylate transporter family receptor K3556_05940 PF01970 Tripartite tricarboxylate transporter TctA family K3556_05945 PF00171 Aldehyde dehydrogenase family K3556_05960 PF01047 MarR family K3556_05965 PF03061 Thioesterase superfamily K3556_05990 PF12848 ABC transporter K3556_05990 PF00005 ABC transporter K3556_05995 PF00248 Aldo/keto reductase family K3556_06000 PF01467 Cytidylyltransferase-like K3556_06010 PF00043 Glutathione S-transferase, C-terminal domain K3556_06010 PF02798 Glutathione S-transferase, N-terminal domain K3556_06020 PF01921 tRNA synthetases class I (K) K3556_06025 PF13229 Right handed beta helix region K3556_06025 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) K3556_06025 PF12708 Pectate lyase superfamily protein K3556_06030 PF03976 Polyphosphate kinase 2 (PPK2) K3556_06035 PF13406 Transglycosylase SLT domain K3556_06040 PF01554 MatE K3556_06050 PF00155 Aminotransferase class I and II K3556_06055 PF00717 Peptidase S24-like K3556_06055 PF01381 Helix-turn-helix K3556_06060 PF03937 Flavinator of succinate dehydrogenase K3556_06065 PF12802 MarR family K3556_06075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K3556_06080 PF02511 Thymidylate synthase complementing protein K3556_06090 PF00313 'Cold-shock' DNA-binding domain K3556_06095 PF03960 ArsC family K3556_06115 PF05114 Protein of unknown function (DUF692) K3556_06125 PF02824 TGS domain K3556_06125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K3556_06125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K3556_06125 PF03129 Anticodon binding domain K3556_06135 PF08386 TAP-like protein K3556_06135 PF00561 alpha/beta hydrolase fold K3556_06145 PF00561 alpha/beta hydrolase fold K3556_06145 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K3556_06160 PF01726 LexA DNA binding domain K3556_06160 PF00717 Peptidase S24-like K3556_06165 PF03453 MoeA N-terminal region (domain I and II) K3556_06165 PF03454 MoeA C-terminal region (domain IV) K3556_06165 PF00994 Probable molybdopterin binding domain K3556_06170 PF01967 MoaC family K3556_06175 PF00218 Indole-3-glycerol phosphate synthase K3556_06180 PF02885 Glycosyl transferase family, helical bundle domain K3556_06180 PF00591 Glycosyl transferase family, a/b domain K3556_06185 PF00117 Glutamine amidotransferase class-I K3556_06205 PF00113 Enolase, C-terminal TIM barrel domain K3556_06205 PF03952 Enolase, N-terminal domain K3556_06210 PF00892 EamA-like transporter family K3556_06215 PF01475 Ferric uptake regulator family K3556_06225 PF00999 Sodium/hydrogen exchanger family K3556_06240 PF02696 Uncharacterized ACR, YdiU/UPF0061 family K3556_06245 PF00583 Acetyltransferase (GNAT) family K3556_06250 PF01156 Inosine-uridine preferring nucleoside hydrolase K3556_06265 PF01521 Iron-sulphur cluster biosynthesis K3556_06270 PF13286 Phosphohydrolase-associated domain K3556_06270 PF01966 HD domain K3556_06275 PF05746 DALR anticodon binding domain K3556_06275 PF00750 tRNA synthetases class I (R) K3556_06275 PF03485 Arginyl tRNA synthetase N terminal domain K3556_06285 PF00933 Glycosyl hydrolase family 3 N terminal domain K3556_06290 PF02616 Segregation and condensation protein ScpA K3556_06295 PF04079 Segregation and condensation complex subunit ScpB K3556_06305 PF01066 CDP-alcohol phosphatidyltransferase K3556_06310 PF02666 Phosphatidylserine decarboxylase K3556_06315 PF00692 dUTPase K3556_06330 PF00216 Bacterial DNA-binding protein K3556_06335 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K3556_06335 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K3556_06340 PF02504 Fatty acid synthesis protein K3556_06345 PF01783 Ribosomal L32p protein family K3556_06365 PF16326 ABC transporter C-terminal domain K3556_06365 PF00005 ABC transporter K3556_06375 PF03006 Haemolysin-III related K3556_06380 PF00282 Pyridoxal-dependent decarboxylase conserved domain K3556_06385 PF00121 Triosephosphate isomerase K3556_06390 PF03171 2OG-Fe(II) oxygenase superfamily K3556_06390 PF14226 non-haem dioxygenase in morphine synthesis N-terminal K3556_06400 PF01521 Iron-sulphur cluster biosynthesis K3556_06405 PF01883 Iron-sulfur cluster assembly protein K3556_06415 PF01702 Queuine tRNA-ribosyltransferase K3556_06420 PF00004 ATPase family associated with various cellular activities (AAA) K3556_06420 PF05362 Lon protease (S16) C-terminal proteolytic domain K3556_06420 PF02190 ATP-dependent protease La (LON) substrate-binding domain K3556_06435 PF01965 DJ-1/PfpI family K3556_06435 PF12833 Helix-turn-helix domain K3556_06445 PF00300 Histidine phosphatase superfamily (branch 1) K3556_06470 PF00155 Aminotransferase class I and II K3556_06480 PF04551 GcpE protein K3556_06495 PF03652 Holliday junction resolvase K3556_06505 PF01266 FAD dependent oxidoreductase K3556_06515 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_06515 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_06515 PF01571 Aminomethyltransferase folate-binding domain K3556_06515 PF17806 Sarcosine oxidase A3 domain K3556_06535 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K3556_06535 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K3556_06540 PF00892 EamA-like transporter family K3556_06545 PF03641 Possible lysine decarboxylase K3556_06560 PF00664 ABC transporter transmembrane region K3556_06560 PF00005 ABC transporter K3556_06565 PF00873 AcrB/AcrD/AcrF family K3556_06585 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal K3556_06585 PF01926 50S ribosome-binding GTPase K3556_06590 PF00149 Calcineurin-like phosphoesterase K3556_06590 PF02872 5'-nucleotidase, C-terminal domain K3556_06605 PF01975 Survival protein SurE K3556_06615 PF13537 Glutamine amidotransferase domain K3556_06615 PF00156 Phosphoribosyl transferase domain K3556_06625 PF06745 KaiC K3556_06625 PF18073 Rubredoxin metal binding domain K3556_06635 PF00005 ABC transporter K3556_06640 PF02405 Permease MlaE K3556_06645 PF01168 Alanine racemase, N-terminal domain K3556_06645 PF00842 Alanine racemase, C-terminal domain K3556_06670 PF00120 Glutamine synthetase, catalytic domain K3556_06670 PF03951 Glutamine synthetase, beta-Grasp domain K3556_06675 PF00543 Nitrogen regulatory protein P-II K3556_06680 PF03853 YjeF-related protein N-terminus K3556_06695 PF05697 Bacterial trigger factor protein (TF) K3556_06695 PF05698 Bacterial trigger factor protein (TF) C-terminus K3556_06695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K3556_06705 PF03009 Glycerophosphoryl diester phosphodiesterase family K3556_06715 PF01281 Ribosomal protein L9, N-terminal domain K3556_06715 PF03948 Ribosomal protein L9, C-terminal domain K3556_06720 PF01084 Ribosomal protein S18 K3556_06725 PF01250 Ribosomal protein S6 K3556_06735 PF00698 Acyl transferase domain K3556_06745 PF00550 Phosphopantetheine attachment site K3556_06750 PF00977 Histidine biosynthesis protein K3556_06755 PF00109 Beta-ketoacyl synthase, N-terminal domain K3556_06755 PF02801 Beta-ketoacyl synthase, C-terminal domain K3556_06760 PF02618 YceG-like family K3556_06775 PF04860 Phage portal protein K3556_06850 PF01258 Prokaryotic dksA/traR C4-type zinc finger K3556_06855 PF00132 Bacterial transferase hexapeptide (six repeats) K3556_06855 PF06426 Serine acetyltransferase, N-terminal K3556_06865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K3556_06865 PF00364 Biotin-requiring enzyme K3556_06865 PF02817 e3 binding domain K3556_06870 PF00364 Biotin-requiring enzyme K3556_06870 PF02779 Transketolase, pyrimidine binding domain K3556_06870 PF02780 Transketolase, C-terminal domain K3556_06875 PF00676 Dehydrogenase E1 component K3556_06880 PF04977 Septum formation initiator K3556_06885 PF00274 Fructose-bisphosphate aldolase class-I K3556_06895 PF00162 Phosphoglycerate kinase K3556_06900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K3556_06905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K3556_06915 PF00425 chorismate binding enzyme K3556_06915 PF04715 Anthranilate synthase component I, N terminal region K3556_06925 PF00155 Aminotransferase class I and II K3556_06930 PF00579 tRNA synthetases class I (W and Y) K3556_06935 PF03702 Anhydro-N-acetylmuramic acid kinase K3556_06950 PF06213 Cobalamin biosynthesis protein CobT K3556_06950 PF11775 Cobalamin biosynthesis protein CobT VWA domain K3556_06955 PF12556 Cobaltochelatase CobS subunit N terminal K3556_06955 PF08406 CbbQ/NirQ/NorQ C-terminal K3556_06955 PF07728 AAA domain (dynein-related subfamily) K3556_06960 PF00226 DnaJ domain K3556_06975 PF02934 GatB/GatE catalytic domain K3556_06975 PF02637 GatB domain K3556_06985 PF11940 Domain of unknown function (DUF3458) Ig-like fold K3556_06985 PF17432 Domain of unknown function (DUF3458_C) ARM repeats K3556_06985 PF01433 Peptidase family M1 domain K3556_06990 PF01274 Malate synthase K3556_07015 PF00155 Aminotransferase class I and II K3556_07020 PF06965 Na+/H+ antiporter 1 K3556_07020 PF13462 Thioredoxin K3556_07025 PF01520 N-acetylmuramoyl-L-alanine amidase K3556_07025 PF11741 AMIN domain K3556_07030 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K3556_07030 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K3556_07055 PF05726 Pirin C-terminal cupin domain K3556_07055 PF02678 Pirin K3556_07060 PF00266 Aminotransferase class-V K3556_07070 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K3556_07070 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch K3556_07070 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K3556_07075 PF02233 NAD(P) transhydrogenase beta subunit K3556_07085 PF01098 Cell cycle protein K3556_07090 PF04101 Glycosyltransferase family 28 C-terminal domain K3556_07090 PF03033 Glycosyltransferase family 28 N-terminal domain K3556_07095 PF01225 Mur ligase family, catalytic domain K3556_07095 PF08245 Mur ligase middle domain K3556_07095 PF02875 Mur ligase family, glutamate ligase domain K3556_07100 PF13520 Amino acid permease K3556_07115 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K3556_07115 PF01565 FAD binding domain K3556_07120 PF01820 D-ala D-ala ligase N-terminus K3556_07120 PF07478 D-ala D-ala ligase C-terminus K3556_07125 PF03799 Cell division protein FtsQ K3556_07125 PF08478 POTRA domain, FtsQ-type K3556_07130 PF02491 SHS2 domain inserted in FTSA K3556_07135 PF00091 Tubulin/FtsZ family, GTPase domain K3556_07135 PF12327 FtsZ family, C-terminal domain K3556_07140 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase K3556_07145 PF13525 Outer membrane lipoprotein K3556_07150 PF02463 RecF/RecN/SMC N terminal domain K3556_07155 PF01565 FAD binding domain K3556_07155 PF02913 FAD linked oxidases, C-terminal domain K3556_07160 PF00654 Voltage gated chloride channel K3556_07165 PF00398 Ribosomal RNA adenine dimethylase K3556_07170 PF04166 Pyridoxal phosphate biosynthetic protein PdxA K3556_07180 PF03968 OstA-like protein K3556_07180 PF04453 LPS transport system D K3556_07195 PF00883 Cytosol aminopeptidase family, catalytic domain K3556_07210 PF01914 MarC family integral membrane protein K3556_07215 PF12848 ABC transporter K3556_07215 PF00005 ABC transporter K3556_07225 PF00334 Nucleoside diphosphate kinase K3556_07265 PF02384 N-6 DNA Methylase K3556_07265 PF12161 HsdM N-terminal domain K3556_07270 PF01420 Type I restriction modification DNA specificity domain K3556_07275 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) K3556_07275 PF00271 Helicase conserved C-terminal domain K3556_07275 PF08463 EcoEI R protein C-terminal K3556_07275 PF04851 Type III restriction enzyme, res subunit K3556_07290 PF00075 RNase H K3556_07300 PF14659 Phage integrase, N-terminal SAM-like domain K3556_07300 PF00589 Phage integrase family K3556_07300 PF13356 Arm DNA-binding domain K3556_07365 PF01555 DNA methylase K3556_07390 PF16123 Hydroxyacylglutathione hydrolase C-terminus K3556_07390 PF00753 Metallo-beta-lactamase superfamily K3556_07395 PF00672 HAMP domain K3556_07395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_07395 PF00512 His Kinase A (phospho-acceptor) domain K3556_07400 PF00596 Class II Aldolase and Adducin N-terminal domain K3556_07405 PF13533 Biotin-lipoyl like K3556_07410 PF00005 ABC transporter K3556_07410 PF12704 MacB-like periplasmic core domain K3556_07410 PF02687 FtsX-like permease family K3556_07415 PF00005 ABC transporter K3556_07425 PF00586 AIR synthase related protein, N-terminal domain K3556_07425 PF02769 AIR synthase related protein, C-terminal domain K3556_07430 PF00551 Formyl transferase K3556_07435 PF01612 3'-5' exonuclease K3556_07435 PF00570 HRDC domain K3556_07445 PF02657 Fe-S metabolism associated domain K3556_07460 PF02310 B12 binding domain K3556_07460 PF02607 B12 binding domain K3556_07465 PF04055 Radical SAM superfamily K3556_07470 PF02965 Vitamin B12 dependent methionine synthase, activation domain K3556_07470 PF02574 Homocysteine S-methyltransferase K3556_07470 PF02607 B12 binding domain K3556_07470 PF02310 B12 binding domain K3556_07470 PF00809 Pterin binding enzyme K3556_07475 PF03706 Lysylphosphatidylglycerol synthase TM region K3556_07485 PF01259 SAICAR synthetase K3556_07490 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase K3556_07500 PF02743 Cache domain K3556_07500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_07500 PF00512 His Kinase A (phospho-acceptor) domain K3556_07505 PF00158 Sigma-54 interaction domain K3556_07505 PF02954 Bacterial regulatory protein, Fis family K3556_07505 PF00072 Response regulator receiver domain K3556_07510 PF03328 HpcH/HpaI aldolase/citrate lyase family K3556_07525 PF01406 tRNA synthetases class I (C) catalytic domain K3556_07530 PF00682 HMGL-like K3556_07530 PF08502 LeuA allosteric (dimerisation) domain K3556_07540 PF01321 Creatinase/Prolidase N-terminal domain K3556_07540 PF00557 Metallopeptidase family M24 K3556_07545 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K3556_07550 PF00202 Aminotransferase class-III K3556_07555 PF08443 RimK-like ATP-grasp domain K3556_07555 PF18030 RimK PreATP-grasp domain K3556_07560 PF08443 RimK-like ATP-grasp domain K3556_07560 PF18030 RimK PreATP-grasp domain K3556_07570 PF01544 CorA-like Mg2+ transporter protein K3556_07575 PF01081 KDPG and KHG aldolase K3556_07580 PF00920 Dehydratase family K3556_07585 PF10672 S-adenosylmethionine-dependent methyltransferase K3556_07585 PF17785 PUA-like domain K3556_07640 PF10431 C-terminal, D2-small domain, of ClpB protein K3556_07640 PF02861 Clp amino terminal domain, pathogenicity island component K3556_07640 PF07724 AAA domain (Cdc48 subfamily) K3556_07640 PF00004 ATPase family associated with various cellular activities (AAA) K3556_07640 PF17871 AAA lid domain K3556_07645 PF01258 Prokaryotic dksA/traR C4-type zinc finger K3556_07650 PF01494 FAD binding domain K3556_07660 PF00571 CBS domain K3556_07660 PF00478 IMP dehydrogenase / GMP reductase domain K3556_07680 PF00154 recA bacterial DNA recombination protein K3556_07685 PF02272 DHHA1 domain K3556_07685 PF01411 tRNA synthetases class II (A) K3556_07685 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K3556_07695 PF00009 Elongation factor Tu GTP binding domain K3556_07695 PF00679 Elongation factor G C-terminus K3556_07695 PF03144 Elongation factor Tu domain 2 K3556_07700 PF00893 Small Multidrug Resistance protein K3556_07705 PF01037 Lrp/AsnC ligand binding domain K3556_07715 PF13230 Glutamine amidotransferases class-II K3556_07720 PF00378 Enoyl-CoA hydratase/isomerase K3556_07735 PF00572 Ribosomal protein L13 K3556_07740 PF00380 Ribosomal protein S9/S16 K3556_07745 PF00413 Matrixin K3556_07745 PF08548 Peptidase M10 serralysin C terminal K3556_07745 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) K3556_07780 PF00132 Bacterial transferase hexapeptide (six repeats) K3556_07780 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K3556_07785 PF00550 Phosphopantetheine attachment site K3556_07790 PF00109 Beta-ketoacyl synthase, N-terminal domain K3556_07790 PF02801 Beta-ketoacyl synthase, C-terminal domain K3556_07800 PF05872 Bacterial protein of unknown function (DUF853) K3556_07810 PF01595 Cyclin M transmembrane N-terminal domain K3556_07810 PF00571 CBS domain K3556_07810 PF03471 Transporter associated domain K3556_07820 PF00909 Ammonium Transporter Family K3556_07825 PF02464 Competence-damaged protein K3556_07825 PF18146 Damage-inducible protein CinA KH domain K3556_07825 PF00994 Probable molybdopterin binding domain K3556_07835 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K3556_07835 PF02542 YgbB family K3556_07840 PF01207 Dihydrouridine synthase (Dus) K3556_07845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_07845 PF00512 His Kinase A (phospho-acceptor) domain K3556_07850 PF02954 Bacterial regulatory protein, Fis family K3556_07850 PF00072 Response regulator receiver domain K3556_07850 PF14532 Sigma-54 interaction domain K3556_07855 PF00672 HAMP domain K3556_07855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_07855 PF00512 His Kinase A (phospho-acceptor) domain K3556_07855 PF00989 PAS fold K3556_07860 PF02954 Bacterial regulatory protein, Fis family K3556_07860 PF00072 Response regulator receiver domain K3556_07860 PF00158 Sigma-54 interaction domain K3556_07865 PF02254 TrkA-N domain K3556_07865 PF02080 TrkA-C domain K3556_07875 PF17209 Hfq protein K3556_07880 PF16360 GTP-binding GTPase Middle Region K3556_07880 PF13167 GTP-binding GTPase N-terminal K3556_07880 PF01926 50S ribosome-binding GTPase K3556_07885 PF01804 Penicillin amidase K3556_07890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K3556_07890 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K3556_07900 PF00490 Delta-aminolevulinic acid dehydratase K3556_07910 PF00270 DEAD/DEAH box helicase K3556_07910 PF02559 CarD-like/TRCF domain K3556_07910 PF00271 Helicase conserved C-terminal domain K3556_07910 PF03461 TRCF domain K3556_07910 PF17757 UvrB interaction domain K3556_07915 PF07690 Major Facilitator Superfamily K3556_07925 PF13193 AMP-binding enzyme C-terminal domain K3556_07925 PF00501 AMP-binding enzyme K3556_07935 PF00582 Universal stress protein family K3556_07940 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K3556_07940 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_07945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_07945 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K3556_07950 PF03480 Bacterial extracellular solute-binding protein, family 7 K3556_07955 PF03466 LysR substrate binding domain K3556_07955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_07960 PF01758 Sodium Bile acid symporter family K3556_07965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3556_07980 PF01810 LysE type translocator K3556_07990 PF12826 Helix-hairpin-helix motif K3556_07990 PF03119 NAD-dependent DNA ligase C4 zinc finger domain K3556_07990 PF03120 NAD-dependent DNA ligase OB-fold domain K3556_07990 PF01653 NAD-dependent DNA ligase adenylation domain K3556_07990 PF00533 BRCA1 C Terminus (BRCT) domain K3556_07995 PF17191 RecG wedge domain K3556_07995 PF00270 DEAD/DEAH box helicase K3556_07995 PF00271 Helicase conserved C-terminal domain K3556_08005 PF01502 Phosphoribosyl-AMP cyclohydrolase K3556_08010 PF00749 tRNA synthetases class I (E and Q), catalytic domain K3556_08015 PF01134 Glucose inhibited division protein A K3556_08020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K3556_08030 PF03989 DNA gyrase C-terminal domain, beta-propeller K3556_08030 PF00521 DNA gyrase/topoisomerase IV, subunit A K3556_08035 PF02628 Cytochrome oxidase assembly protein K3556_08040 PF02074 Carboxypeptidase Taq (M32) metallopeptidase K3556_08065 PF02129 X-Pro dipeptidyl-peptidase (S15 family) K3556_08070 PF02082 Transcriptional regulator K3556_08075 PF00266 Aminotransferase class-V K3556_08080 PF01458 Uncharacterized protein family (UPF0051) K3556_08090 PF01906 Putative heavy-metal-binding K3556_08095 PF00005 ABC transporter K3556_08100 PF01458 Uncharacterized protein family (UPF0051) K3556_08115 PF00266 Aminotransferase class-V K3556_08120 PF13977 BetI-type transcriptional repressor, C-terminal K3556_08120 PF00440 Bacterial regulatory proteins, tetR family K3556_08125 PF03976 Polyphosphate kinase 2 (PPK2) K3556_08130 PF04204 Homoserine O-succinyltransferase K3556_08165 PF00958 GMP synthase C terminal domain K3556_08165 PF02540 NAD synthase K3556_08165 PF00117 Glutamine amidotransferase class-I K3556_08170 PF06253 Trimethylamine methyltransferase (MTTB) K3556_08190 PF00989 PAS fold K3556_08190 PF16736 Single Cache-like K3556_08190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_08190 PF00512 His Kinase A (phospho-acceptor) domain K3556_08200 PF00528 Binding-protein-dependent transport system inner membrane component K3556_08205 PF00528 Binding-protein-dependent transport system inner membrane component K3556_08210 PF00005 ABC transporter K3556_08215 PF01895 PhoU domain K3556_08220 PF00486 Transcriptional regulatory protein, C terminal K3556_08220 PF00072 Response regulator receiver domain K3556_08225 PF01699 Sodium/calcium exchanger protein K3556_08230 PF01220 Dehydroquinase class II K3556_08235 PF00196 Bacterial regulatory proteins, luxR family K3556_08235 PF03472 Autoinducer binding domain K3556_08240 PF00889 Elongation factor TS K3556_08245 PF00318 Ribosomal protein S2 K3556_08250 PF01467 Cytidylyltransferase-like K3556_08250 PF00294 pfkB family carbohydrate kinase K3556_08255 PF04227 Indigoidine synthase A like protein K3556_08260 PF00072 Response regulator receiver domain K3556_08260 PF00486 Transcriptional regulatory protein, C terminal K3556_08275 PF02684 Lipid-A-disaccharide synthetase K3556_08280 PF06230 LpxI C-terminal domain K3556_08280 PF17930 LpxI N-terminal domain K3556_08285 PF00132 Bacterial transferase hexapeptide (six repeats) K3556_08285 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 K3556_08290 PF07977 FabA-like domain K3556_08300 PF01103 Surface antigen K3556_08300 PF07244 Surface antigen variable number repeat K3556_08305 PF02163 Peptidase family M50 K3556_08305 PF17820 PDZ domain K3556_08310 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain K3556_08310 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase K3556_08310 PF13288 DXP reductoisomerase C-terminal domain K3556_08320 PF01255 Putative undecaprenyl diphosphate synthase K3556_08325 PF01765 Ribosome recycling factor K3556_08330 PF00696 Amino acid kinase family K3556_08355 PF01464 Transglycosylase SLT domain K3556_08360 PF00436 Single-strand binding protein family K3556_08365 PF01761 3-dehydroquinate synthase K3556_08370 PF01202 Shikimate kinase K3556_08385 PF02899 Phage integrase, N-terminal SAM-like domain K3556_08385 PF00589 Phage integrase family K3556_08390 PF00270 DEAD/DEAH box helicase K3556_08390 PF00271 Helicase conserved C-terminal domain K3556_08400 PF03364 Polyketide cyclase / dehydrase and lipid transport K3556_08405 PF00156 Phosphoribosyl transferase domain K3556_08415 PF04055 Radical SAM superfamily K3556_08415 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family K3556_08420 PF08534 Redoxin K3556_08430 PF00132 Bacterial transferase hexapeptide (six repeats) K3556_08435 PF00625 Guanylate kinase K3556_08440 PF08340 Domain of unknown function (DUF1732) K3556_08440 PF03755 YicC-like family, N-terminal region K3556_08450 PF01474 Class-II DAHP synthetase family K3556_08455 PF12833 Helix-turn-helix domain K3556_08455 PF01965 DJ-1/PfpI family K3556_08465 PF13458 Periplasmic binding protein K3556_08470 PF00005 ABC transporter K3556_08470 PF12399 Branched-chain amino acid ATP-binding cassette transporter K3556_08475 PF00005 ABC transporter K3556_08485 PF02653 Branched-chain amino acid transport system / permease component K3556_08495 PF00132 Bacterial transferase hexapeptide (six repeats) K3556_08495 PF12804 MobA-like NTP transferase domain K3556_08505 PF01053 Cys/Met metabolism PLP-dependent enzyme K3556_08515 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_08530 PF04228 Putative neutral zinc metallopeptidase K3556_08535 PF09335 SNARE associated Golgi protein K3556_08545 PF00588 SpoU rRNA Methylase family K3556_08575 PF10090 Histidine phosphotransferase C-terminal domain K3556_08580 PF00171 Aldehyde dehydrogenase family K3556_08585 PF01472 PUA domain K3556_08585 PF00696 Amino acid kinase family K3556_08590 PF01018 GTP1/OBG K3556_08590 PF01926 50S ribosome-binding GTPase K3556_08610 PF01016 Ribosomal L27 protein K3556_08615 PF00829 Ribosomal prokaryotic L21 protein K3556_08620 PF13181 Tetratricopeptide repeat K3556_08645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_08645 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K3556_08655 PF03480 Bacterial extracellular solute-binding protein, family 7 K3556_08660 PF01266 FAD dependent oxidoreductase K3556_08665 PF03466 LysR substrate binding domain K3556_08665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_08675 PF00171 Aldehyde dehydrogenase family K3556_08680 PF00296 Luciferase-like monooxygenase K3556_08685 PF01613 Flavin reductase like domain K3556_08690 PF12697 Alpha/beta hydrolase family K3556_08700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_08700 PF03466 LysR substrate binding domain K3556_08710 PF00873 AcrB/AcrD/AcrF family K3556_08725 PF00171 Aldehyde dehydrogenase family K3556_08730 PF01728 FtsJ-like methyltransferase K3556_08735 PF02541 Ppx/GppA phosphatase family K3556_08745 PF02219 Methylenetetrahydrofolate reductase K3556_08750 PF02574 Homocysteine S-methyltransferase K3556_08750 PF02310 B12 binding domain K3556_08750 PF00809 Pterin binding enzyme K3556_08750 PF02965 Vitamin B12 dependent methionine synthase, activation domain K3556_08750 PF02607 B12 binding domain K3556_08755 PF02515 CoA-transferase family III K3556_08775 PF01925 Sulfite exporter TauE/SafE K3556_08780 PF01207 Dihydrouridine synthase (Dus) K3556_08785 PF00589 Phage integrase family K3556_08815 PF00075 RNase H K3556_08880 PF00106 short chain dehydrogenase K3556_08885 PF01740 STAS domain K3556_08885 PF00916 Sulfate permease family K3556_08895 PF00753 Metallo-beta-lactamase superfamily K3556_08905 PF04143 Sulphur transport K3556_08915 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding K3556_08915 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_08915 PF10518 TAT (twin-arginine translocation) pathway signal sequence K3556_08920 PF00034 Cytochrome c K3556_08930 PF00034 Cytochrome c K3556_08935 PF00174 Oxidoreductase molybdopterin binding domain K3556_08940 PF00149 Calcineurin-like phosphoesterase K3556_08940 PF02872 5'-nucleotidase, C-terminal domain K3556_08965 PF02683 Cytochrome C biogenesis protein transmembrane region K3556_08980 PF04143 Sulphur transport K3556_08985 PF01613 Flavin reductase like domain K3556_09000 PF00313 'Cold-shock' DNA-binding domain K3556_09010 PF01053 Cys/Met metabolism PLP-dependent enzyme K3556_09015 PF04402 Protein of unknown function (DUF541) K3556_09025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K3556_09030 PF13404 AsnC-type helix-turn-helix domain K3556_09030 PF01037 Lrp/AsnC ligand binding domain K3556_09035 PF02277 Phosphoribosyltransferase K3556_09040 PF02654 Cobalamin-5-phosphate synthase K3556_09045 PF02559 CarD-like/TRCF domain K3556_09050 PF00037 4Fe-4S binding domain K3556_09050 PF11953 Domain of unknown function (DUF3470) K3556_09055 PF01479 S4 domain K3556_09080 PF00342 Phosphoglucose isomerase K3556_09085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K3556_09090 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain K3556_09090 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain K3556_09095 PF00491 Arginase family K3556_09115 PF02571 Precorrin-6x reductase CbiJ/CobK K3556_09120 PF01888 CbiD K3556_09125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3556_09130 PF07685 CobB/CobQ-like glutamine amidotransferase domain K3556_09130 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K3556_09135 PF07690 Major Facilitator Superfamily K3556_09140 PF00005 ABC transporter K3556_09140 PF00571 CBS domain K3556_09145 PF00528 Binding-protein-dependent transport system inner membrane component K3556_09160 PF00392 Bacterial regulatory proteins, gntR family K3556_09160 PF07702 UTRA domain K3556_09165 PF05721 Phytanoyl-CoA dioxygenase (PhyH) K3556_09175 PF16350 FAD dependent oxidoreductase central domain K3556_09175 PF01266 FAD dependent oxidoreductase K3556_09175 PF01571 Aminomethyltransferase folate-binding domain K3556_09175 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_09190 PF03710 Glutamate-ammonia ligase adenylyltransferase K3556_09190 PF08335 GlnD PII-uridylyltransferase K3556_09200 PF01292 Prokaryotic cytochrome b561 K3556_09215 PF04377 Arginine-tRNA-protein transferase, C terminus K3556_09215 PF04376 Arginine-tRNA-protein transferase, N terminus K3556_09220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K3556_09220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K3556_09220 PF00205 Thiamine pyrophosphate enzyme, central domain K3556_09225 PF10369 Small subunit of acetolactate synthase K3556_09235 PF08471 Class II vitamin B12-dependent ribonucleotide reductase K3556_09235 PF02867 Ribonucleotide reductase, barrel domain K3556_09250 PF00313 'Cold-shock' DNA-binding domain K3556_09255 PF01243 Pyridoxamine 5'-phosphate oxidase K3556_09255 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region K3556_09265 PF00156 Phosphoribosyl transferase domain K3556_09275 PF05175 Methyltransferase small domain K3556_09275 PF17827 PrmC N-terminal domain K3556_09280 PF03462 PCRF domain K3556_09280 PF00472 RF-1 domain K3556_09295 PF00491 Arginase family K3556_09300 PF07687 Peptidase dimerisation domain K3556_09300 PF01546 Peptidase family M20/M25/M40 K3556_09305 PF03819 MazG nucleotide pyrophosphohydrolase domain K3556_09310 PF13416 Bacterial extracellular solute-binding protein K3556_09315 PF17760 UvrA interaction domain K3556_09315 PF17755 UvrA DNA-binding domain K3556_09335 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_09335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K3556_09345 PF07690 Major Facilitator Superfamily K3556_09350 PF02547 Queuosine biosynthesis protein K3556_09360 PF00578 AhpC/TSA family K3556_09365 PF04305 Protein of unknown function (DUF455) K3556_09370 PF01551 Peptidase family M23 K3556_09370 PF08525 Opacity-associated protein A N-terminal motif K3556_09370 PF01476 LysM domain K3556_09390 PF03462 PCRF domain K3556_09390 PF00472 RF-1 domain K3556_09400 PF00005 ABC transporter K3556_09400 PF17912 MalK OB fold domain K3556_09400 PF03459 TOBE domain K3556_09405 PF00128 Alpha amylase, catalytic domain K3556_09410 PF00528 Binding-protein-dependent transport system inner membrane component K3556_09415 PF00528 Binding-protein-dependent transport system inner membrane component K3556_09420 PF01547 Bacterial extracellular solute-binding protein K3556_09425 PF00356 Bacterial regulatory proteins, lacI family K3556_09430 PF00232 Glycosyl hydrolase family 1 K3556_09435 PF02685 Glucokinase K3556_09445 PF12833 Helix-turn-helix domain K3556_09445 PF01965 DJ-1/PfpI family K3556_09450 PF05853 beta-keto acid cleavage enzyme K3556_09460 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K3556_09460 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K3556_09465 PF02770 Acyl-CoA dehydrogenase, middle domain K3556_09465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3556_09465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3556_09470 PF13380 CoA binding domain K3556_09470 PF13607 Succinyl-CoA ligase like flavodoxin domain K3556_09475 PF00378 Enoyl-CoA hydratase/isomerase K3556_09480 PF02080 TrkA-C domain K3556_09480 PF03600 Citrate transporter K3556_09485 PF02469 Fasciclin domain K3556_09490 PF01979 Amidohydrolase family K3556_09495 PF08013 Tagatose 6 phosphate kinase K3556_09500 PF00480 ROK family K3556_09505 PF01380 SIS domain K3556_09510 PF01380 SIS domain K3556_09515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K3556_09515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K3556_09520 PF00005 ABC transporter K3556_09520 PF08402 TOBE domain K3556_09530 PF00528 Binding-protein-dependent transport system inner membrane component K3556_09535 PF00528 Binding-protein-dependent transport system inner membrane component K3556_09540 PF00392 Bacterial regulatory proteins, gntR family K3556_09540 PF07702 UTRA domain K3556_09545 PF00728 Glycosyl hydrolase family 20, catalytic domain K3556_09545 PF02838 Glycosyl hydrolase family 20, domain 2 K3556_09550 PF00005 ABC transporter K3556_09550 PF17912 MalK OB fold domain K3556_09555 PF00528 Binding-protein-dependent transport system inner membrane component K3556_09560 PF00528 Binding-protein-dependent transport system inner membrane component K3556_09565 PF13416 Bacterial extracellular solute-binding protein K3556_09570 PF03466 LysR substrate binding domain K3556_09570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_09585 PF01384 Phosphate transporter family K3556_09600 PF00005 ABC transporter K3556_09600 PF08402 TOBE domain K3556_09605 PF00528 Binding-protein-dependent transport system inner membrane component K3556_09610 PF00528 Binding-protein-dependent transport system inner membrane component K3556_09635 PF13454 FAD-NAD(P)-binding K3556_09645 PF01037 Lrp/AsnC ligand binding domain K3556_09650 PF00107 Zinc-binding dehydrogenase K3556_09650 PF08240 Alcohol dehydrogenase GroES-like domain K3556_09655 PF00155 Aminotransferase class I and II K3556_09665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K3556_09665 PF02272 DHHA1 domain K3556_09665 PF01411 tRNA synthetases class II (A) K3556_09670 PF12794 Mechanosensitive ion channel inner membrane domain 1 K3556_09670 PF12795 Mechanosensitive ion channel porin domain K3556_09670 PF00924 Mechanosensitive ion channel K3556_09675 PF00571 CBS domain K3556_09675 PF00291 Pyridoxal-phosphate dependent enzyme K3556_09680 PF00293 NUDIX domain K3556_09695 PF00266 Aminotransferase class-V K3556_09700 PF00011 Hsp20/alpha crystallin family K3556_09705 PF00107 Zinc-binding dehydrogenase K3556_09710 PF01571 Aminomethyltransferase folate-binding domain K3556_09710 PF08669 Glycine cleavage T-protein C-terminal barrel domain K3556_09725 PF07729 FCD domain K3556_09725 PF00392 Bacterial regulatory proteins, gntR family K3556_09730 PF00188 Cysteine-rich secretory protein family K3556_09755 PF09828 Chromate resistance exported protein K3556_09760 PF02417 Chromate transporter K3556_09770 PF10415 Fumarase C C-terminus K3556_09770 PF00206 Lyase K3556_09785 PF00067 Cytochrome P450 K3556_09795 PF02683 Cytochrome C biogenesis protein transmembrane region K3556_09800 PF01206 Sulfurtransferase TusA K3556_09805 PF00575 S1 RNA binding domain K3556_09805 PF10150 Ribonuclease E/G family K3556_09805 PF12111 Polyribonucleotide phosphorylase C terminal K3556_09810 PF00912 Transglycosylase K3556_09810 PF00905 Penicillin binding protein transpeptidase domain K3556_09810 PF17092 Penicillin-binding protein OB-like domain K3556_09815 PF08439 Oligopeptidase F K3556_09815 PF01432 Peptidase family M3 K3556_09825 PF01258 Prokaryotic dksA/traR C4-type zinc finger K3556_09830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K3556_09830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K3556_09835 PF04542 Sigma-70 region 2 K3556_09835 PF00140 Sigma-70 factor, region 1.2 K3556_09835 PF04545 Sigma-70, region 4 K3556_09840 PF13091 PLD-like domain K3556_09840 PF13396 Phospholipase_D-nuclease N-terminal K3556_09845 PF00849 RNA pseudouridylate synthase K3556_09880 PF07995 Glucose / Sorbosone dehydrogenase K3556_09895 PF01029 NusB family K3556_09900 PF00885 6,7-dimethyl-8-ribityllumazine synthase K3556_09905 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase K3556_09905 PF00925 GTP cyclohydrolase II K3556_09915 PF00753 Metallo-beta-lactamase superfamily K3556_09920 PF00677 Lumazine binding domain K3556_09925 PF05159 Capsule polysaccharide biosynthesis protein K3556_09935 PF05159 Capsule polysaccharide biosynthesis protein K3556_09940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K3556_09940 PF01872 RibD C-terminal domain K3556_09945 PF03477 ATP cone domain K3556_09955 PF01894 Uncharacterised protein family UPF0047 K3556_09965 PF04539 Sigma-70 region 3 K3556_09965 PF04545 Sigma-70, region 4 K3556_09965 PF04546 Sigma-70, non-essential region K3556_09965 PF04542 Sigma-70 region 2 K3556_09965 PF00140 Sigma-70 factor, region 1.2 K3556_09965 PF03979 Sigma-70 factor, region 1.1 K3556_09970 PF10410 DnaB-helicase binding domain of primase K3556_09970 PF08278 DNA primase DnaG DnaB-binding K3556_09970 PF13662 Toprim domain K3556_09970 PF08275 DNA primase catalytic core, N-terminal domain K3556_09970 PF01807 CHC2 zinc finger K3556_09975 PF16295 Tetracyclin repressor-like, C-terminal domain K3556_09975 PF00440 Bacterial regulatory proteins, tetR family K3556_09985 PF01842 ACT domain K3556_09985 PF00742 Homoserine dehydrogenase K3556_09985 PF03447 Homoserine dehydrogenase, NAD binding domain K3556_09995 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K3556_10000 PF00857 Isochorismatase family K3556_10005 PF02272 DHHA1 domain K3556_10005 PF17768 RecJ OB domain K3556_10005 PF01368 DHH family K3556_10015 PF00563 EAL domain K3556_10015 PF00990 Diguanylate cyclase, GGDEF domain K3556_10015 PF05231 MASE1 K3556_10015 PF08447 PAS fold K3556_10015 PF08448 PAS fold K3556_10015 PF13426 PAS domain K3556_10025 PF13419 Haloacid dehalogenase-like hydrolase K3556_10035 PF07694 5TMR of 5TMR-LYT K3556_10035 PF00990 Diguanylate cyclase, GGDEF domain K3556_10050 PF04542 Sigma-70 region 2 K3556_10050 PF08281 Sigma-70, region 4 K3556_10080 PF00248 Aldo/keto reductase family K3556_10085 PF00106 short chain dehydrogenase K3556_10090 PF00009 Elongation factor Tu GTP binding domain K3556_10090 PF03144 Elongation factor Tu domain 2 K3556_10090 PF16658 Class II release factor RF3, C-terminal domain K3556_10105 PF00270 DEAD/DEAH box helicase K3556_10105 PF00271 Helicase conserved C-terminal domain K3556_10110 PF17770 Ribonuclease J C-terminal domain K3556_10110 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain K3556_10110 PF12706 Beta-lactamase superfamily domain K3556_10115 PF03309 Type III pantothenate kinase K3556_10120 PF03099 Biotin/lipoate A/B protein ligase family K3556_10120 PF02237 Biotin protein ligase C terminal domain K3556_10125 PF00361 Proton-conducting membrane transporter K3556_10130 PF00361 Proton-conducting membrane transporter K3556_10130 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus K3556_10135 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K3556_10135 PF00361 Proton-conducting membrane transporter K3556_10140 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K3556_10145 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K3556_10150 PF02627 Carboxymuconolactone decarboxylase family K3556_10155 PF12838 4Fe-4S dicluster domain K3556_10160 PF00146 NADH dehydrogenase K3556_10165 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K3556_10165 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal K3556_10165 PF00384 Molybdopterin oxidoreductase K3556_10175 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit K3556_10175 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K3556_10175 PF10531 SLBB domain K3556_10185 PF00829 Ribosomal prokaryotic L21 protein K3556_10195 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit K3556_10205 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit K3556_10210 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit K3556_10215 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K3556_10220 PF00378 Enoyl-CoA hydratase/isomerase K3556_10225 PF00682 HMGL-like K3556_10235 PF00364 Biotin-requiring enzyme K3556_10235 PF00289 Biotin carboxylase, N-terminal domain K3556_10235 PF02785 Biotin carboxylase C-terminal domain K3556_10235 PF18140 Propionyl-coenzyme A carboxylase BT domain K3556_10235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3556_10245 PF01039 Carboxyl transferase domain K3556_10255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3556_10255 PF02770 Acyl-CoA dehydrogenase, middle domain K3556_10255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3556_10260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family K3556_10265 PF13419 Haloacid dehalogenase-like hydrolase K3556_10270 PF12804 MobA-like NTP transferase domain K3556_10270 PF00132 Bacterial transferase hexapeptide (six repeats) K3556_10275 PF01380 SIS domain K3556_10290 PF00501 AMP-binding enzyme K3556_10290 PF13193 AMP-binding enzyme C-terminal domain K3556_10300 PF06463 Molybdenum Cofactor Synthesis C K3556_10300 PF04055 Radical SAM superfamily K3556_10305 PF07687 Peptidase dimerisation domain K3556_10305 PF01546 Peptidase family M20/M25/M40 K3556_10310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3556_10315 PF00528 Binding-protein-dependent transport system inner membrane component K3556_10320 PF00528 Binding-protein-dependent transport system inner membrane component K3556_10320 PF12911 N-terminal TM domain of oligopeptide transport permease C K3556_10325 PF04143 Sulphur transport K3556_10335 PF02875 Mur ligase family, glutamate ligase domain K3556_10335 PF08245 Mur ligase middle domain K3556_10340 PF00953 Glycosyl transferase family 4 K3556_10340 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 K3556_10345 PF01225 Mur ligase family, catalytic domain K3556_10345 PF02875 Mur ligase family, glutamate ligase domain K3556_10345 PF08245 Mur ligase middle domain K3556_10350 PF01225 Mur ligase family, catalytic domain K3556_10350 PF08245 Mur ligase middle domain K3556_10350 PF02875 Mur ligase family, glutamate ligase domain K3556_10355 PF00905 Penicillin binding protein transpeptidase domain K3556_10355 PF03717 Penicillin-binding Protein dimerisation domain K3556_10365 PF01795 MraW methylase family K3556_10370 PF02381 MraZ protein, putative antitoxin-like K3556_10375 PF10609 NUBPL iron-transfer P-loop NTPase K3556_10390 PF00580 UvrD/REP helicase N-terminal domain K3556_10390 PF13361 UvrD-like helicase C-terminal domain K3556_10395 PF01131 DNA topoisomerase K3556_10395 PF01751 Toprim domain K3556_10395 PF13368 Topoisomerase C-terminal repeat K3556_10395 PF01396 Topoisomerase DNA binding C4 zinc finger K3556_10410 PF01144 Coenzyme A transferase K3556_10415 PF01144 Coenzyme A transferase K3556_10425 PF02794 RTX toxin acyltransferase family K3556_10440 PF04030 D-arabinono-1,4-lactone oxidase K3556_10440 PF01565 FAD binding domain K3556_10445 PF00106 short chain dehydrogenase K3556_10455 PF01040 UbiA prenyltransferase family K3556_10460 PF00497 Bacterial extracellular solute-binding proteins, family 3 K3556_10460 PF01464 Transglycosylase SLT domain K3556_10480 PF04972 BON domain K3556_10480 PF13629 Pilus formation protein N terminal region K3556_10480 PF00263 Bacterial type II and III secretion system protein K3556_10485 PF01389 OmpA-like transmembrane domain K3556_10485 PF00691 OmpA family K3556_10495 PF00437 Type II/IV secretion system protein K3556_10535 PF08494 DEAD/H associated K3556_10535 PF00270 DEAD/DEAH box helicase K3556_10535 PF00271 Helicase conserved C-terminal domain K3556_10550 PF00378 Enoyl-CoA hydratase/isomerase K3556_10565 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain K3556_10565 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain K3556_10570 PF01268 Formate--tetrahydrofolate ligase K3556_10585 PF00004 ATPase family associated with various cellular activities (AAA) K3556_10585 PF17862 AAA+ lid domain K3556_10585 PF01434 Peptidase family M41 K3556_10585 PF06480 FtsH Extracellular K3556_10590 PF01171 PP-loop family K3556_10600 PF00691 OmpA family K3556_10605 PF07676 WD40-like Beta Propeller Repeat K3556_10605 PF04052 TolB amino-terminal domain K3556_10610 PF03932 CutC family K3556_10620 PF02472 Biopolymer transport protein ExbD/TolR K3556_10625 PF01618 MotA/TolQ/ExbB proton channel family K3556_10630 PF03061 Thioesterase superfamily K3556_10645 PF05491 RuvB C-terminal winged helix domain K3556_10645 PF05496 Holliday junction DNA helicase RuvB P-loop domain K3556_10645 PF17864 RuvB AAA lid domain K3556_10650 PF01330 RuvA N terminal domain K3556_10650 PF07499 RuvA, C-terminal domain K3556_10655 PF02075 Crossover junction endodeoxyribonuclease RuvC K3556_10665 PF13180 PDZ domain K3556_10665 PF17820 PDZ domain K3556_10670 PF00487 Fatty acid desaturase K3556_10680 PF01145 SPFH domain / Band 7 family K3556_10685 PF12221 Bacterial membrane protein N terminal K3556_10685 PF01145 SPFH domain / Band 7 family K3556_10690 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_10690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K3556_10695 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) K3556_10700 PF04304 Protein of unknown function (DUF454) K3556_10705 PF03315 Serine dehydratase beta chain K3556_10705 PF03313 Serine dehydratase alpha chain K3556_10725 PF00709 Adenylosuccinate synthetase K3556_10735 PF06418 CTP synthase N-terminus K3556_10735 PF00117 Glutamine amidotransferase class-I K3556_10750 PF00005 ABC transporter K3556_10755 PF00497 Bacterial extracellular solute-binding proteins, family 3 K3556_10760 PF00528 Binding-protein-dependent transport system inner membrane component K3556_10765 PF00528 Binding-protein-dependent transport system inner membrane component K3556_10770 PF00117 Glutamine amidotransferase class-I K3556_10770 PF00958 GMP synthase C terminal domain K3556_10775 PF00120 Glutamine synthetase, catalytic domain K3556_10780 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family K3556_10785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_10785 PF03466 LysR substrate binding domain K3556_10790 PF00753 Metallo-beta-lactamase superfamily K3556_10790 PF03772 Competence protein K3556_10790 PF13567 Domain of unknown function (DUF4131) K3556_10795 PF00749 tRNA synthetases class I (E and Q), catalytic domain K3556_10800 PF00285 Citrate synthase, C-terminal domain K3556_10810 PF00378 Enoyl-CoA hydratase/isomerase K3556_10815 PF03918 Cytochrome C biogenesis protein K3556_10820 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K3556_10820 PF01578 Cytochrome C assembly protein K3556_10845 PF03100 CcmE K3556_10850 PF01118 Semialdehyde dehydrogenase, NAD binding domain K3556_10850 PF02774 Semialdehyde dehydrogenase, dimerisation domain K3556_10855 PF01177 Asp/Glu/Hydantoin racemase K3556_10865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_10865 PF03466 LysR substrate binding domain K3556_10870 PF00586 AIR synthase related protein, N-terminal domain K3556_10870 PF02769 AIR synthase related protein, C-terminal domain K3556_10870 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain K3556_10885 PF00462 Glutaredoxin K3556_10905 PF02779 Transketolase, pyrimidine binding domain K3556_10905 PF02780 Transketolase, C-terminal domain K3556_10905 PF00456 Transketolase, thiamine diphosphate binding domain K3556_10915 PF05661 Protein of unknown function (DUF808) K3556_10920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K3556_10920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K3556_10930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K3556_10930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K3556_10935 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain K3556_10935 PF01276 Orn/Lys/Arg decarboxylase, major domain K3556_10935 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain K3556_10940 PF01467 Cytidylyltransferase-like K3556_10945 PF00571 CBS domain K3556_10945 PF01743 Poly A polymerase head domain K3556_10950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_10950 PF03466 LysR substrate binding domain K3556_10955 PF00171 Aldehyde dehydrogenase family K3556_10965 PF04107 Glutamate-cysteine ligase family 2(GCS2) K3556_10970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K3556_10970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K3556_10970 PF02770 Acyl-CoA dehydrogenase, middle domain K3556_10975 PF00378 Enoyl-CoA hydratase/isomerase K3556_10980 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K3556_10980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K3556_10985 PF00027 Cyclic nucleotide-binding domain K3556_10985 PF13545 Crp-like helix-turn-helix domain K3556_10995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_11000 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K3556_11005 PF03480 Bacterial extracellular solute-binding protein, family 7 K3556_11010 PF02954 Bacterial regulatory protein, Fis family K3556_11010 PF00072 Response regulator receiver domain K3556_11010 PF00158 Sigma-54 interaction domain K3556_11015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_11015 PF02743 Cache domain K3556_11015 PF00512 His Kinase A (phospho-acceptor) domain K3556_11020 PF00067 Cytochrome P450 K3556_11025 PF01037 Lrp/AsnC ligand binding domain K3556_11035 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K3556_11035 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K3556_11040 PF01507 Phosphoadenosine phosphosulfate reductase family K3556_11050 PF00175 Oxidoreductase NAD-binding domain K3556_11050 PF00970 Oxidoreductase FAD-binding domain K3556_11070 PF00707 Translation initiation factor IF-3, C-terminal domain K3556_11070 PF05198 Translation initiation factor IF-3, N-terminal domain K3556_11075 PF01209 ubiE/COQ5 methyltransferase family K3556_11080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_11080 PF03466 LysR substrate binding domain K3556_11085 PF03458 UPF0126 domain K3556_11090 PF13478 XdhC Rossmann domain K3556_11090 PF02625 XdhC and CoxI family K3556_11105 PF01979 Amidohydrolase family K3556_11110 PF00156 Phosphoribosyl transferase domain K3556_11115 PF03796 DnaB-like helicase C terminal domain K3556_11115 PF00772 DnaB-like helicase N terminal domain K3556_11120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K3556_11125 PF00206 Lyase K3556_11125 PF10397 Adenylosuccinate lyase C-terminus K3556_11155 PF00694 Aconitase C-terminal domain K3556_11155 PF00330 Aconitase family (aconitate hydratase) K3556_11160 PF08534 Redoxin K3556_11170 PF01578 Cytochrome C assembly protein K3556_11175 PF03379 CcmB protein K3556_11180 PF00005 ABC transporter K3556_11185 PF04430 Protein of unknown function (DUF498/DUF598) K3556_11195 PF02355 Protein export membrane protein K3556_11200 PF02699 Preprotein translocase subunit K3556_11210 PF02403 Seryl-tRNA synthetase N-terminal domain K3556_11210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K3556_11220 PF00902 Sec-independent protein translocase protein (TatC) K3556_11225 PF02416 mttA/Hcf106 family K3556_11230 PF02416 mttA/Hcf106 family K3556_11235 PF00005 ABC transporter K3556_11235 PF08402 TOBE domain K3556_11240 PF07690 Major Facilitator Superfamily K3556_11245 PF09334 tRNA synthetases class I (M) K3556_11260 PF13840 ACT domain K3556_11260 PF01842 ACT domain K3556_11260 PF00696 Amino acid kinase family K3556_11270 PF05524 PEP-utilising enzyme, N-terminal K3556_11270 PF00391 PEP-utilising enzyme, mobile domain K3556_11270 PF02896 PEP-utilising enzyme, TIM barrel domain K3556_11285 PF01613 Flavin reductase like domain K3556_11290 PF00132 Bacterial transferase hexapeptide (six repeats) K3556_11290 PF14602 Hexapeptide repeat of succinyl-transferase K3556_11290 PF12804 MobA-like NTP transferase domain K3556_11295 PF01740 STAS domain K3556_11295 PF00916 Sulfate permease family K3556_11300 PF01048 Phosphorylase superfamily K3556_11305 PF00156 Phosphoribosyl transferase domain K3556_11310 PF02913 FAD linked oxidases, C-terminal domain K3556_11310 PF01565 FAD binding domain K3556_11320 PF05193 Peptidase M16 inactive domain K3556_11320 PF00675 Insulinase (Peptidase family M16) K3556_11325 PF14821 Threonine synthase N terminus K3556_11325 PF00291 Pyridoxal-phosphate dependent enzyme K3556_11330 PF02104 SURF1 family K3556_11335 PF00510 Cytochrome c oxidase subunit III K3556_11340 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 K3556_11350 PF01040 UbiA prenyltransferase family K3556_11355 PF00116 Cytochrome C oxidase subunit II, periplasmic domain K3556_11355 PF02790 Cytochrome C oxidase subunit II, transmembrane domain K3556_11360 PF01523 Putative modulator of DNA gyrase K3556_11365 PF02481 DNA recombination-mediator protein A K3556_11365 PF17782 DprA winged helix domain K3556_11370 PF02436 Conserved carboxylase domain K3556_11370 PF00682 HMGL-like K3556_11370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3556_11370 PF00364 Biotin-requiring enzyme K3556_11370 PF00289 Biotin carboxylase, N-terminal domain K3556_11370 PF02785 Biotin carboxylase C-terminal domain K3556_11375 PF00561 alpha/beta hydrolase fold K3556_11390 PF01381 Helix-turn-helix K3556_11405 PF00475 Imidazoleglycerol-phosphate dehydratase K3556_11410 PF00117 Glutamine amidotransferase class-I K3556_11420 PF00977 Histidine biosynthesis protein K3556_11430 PF00977 Histidine biosynthesis protein K3556_11435 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase K3556_11440 PF13380 CoA binding domain K3556_11450 PF08032 RNA 2'-O ribose methyltransferase substrate binding K3556_11450 PF00588 SpoU rRNA Methylase family K3556_11465 PF00425 chorismate binding enzyme K3556_11465 PF00117 Glutamine amidotransferase class-I K3556_11465 PF04715 Anthranilate synthase component I, N terminal region K3556_11470 PF01557 Fumarylacetoacetate (FAA) hydrolase family K3556_11475 PF01557 Fumarylacetoacetate (FAA) hydrolase family K3556_11480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase K3556_11485 PF00171 Aldehyde dehydrogenase family K3556_11490 PF00528 Binding-protein-dependent transport system inner membrane component K3556_11495 PF00005 ABC transporter K3556_11495 PF09383 NIL domain K3556_11500 PF12849 PBP superfamily domain K3556_11505 PF01042 Endoribonuclease L-PSP K3556_11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_11515 PF03466 LysR substrate binding domain K3556_11520 PF00291 Pyridoxal-phosphate dependent enzyme K3556_11530 PF01042 Endoribonuclease L-PSP K3556_11535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_11535 PF03466 LysR substrate binding domain K3556_11545 PF00571 CBS domain K3556_11545 PF00005 ABC transporter K3556_11550 PF00528 Binding-protein-dependent transport system inner membrane component K3556_11555 PF00561 alpha/beta hydrolase fold K3556_11555 PF08386 TAP-like protein K3556_11560 PF13419 Haloacid dehalogenase-like hydrolase K3556_11570 PF00528 Binding-protein-dependent transport system inner membrane component K3556_11575 PF00005 ABC transporter K3556_11575 PF08402 TOBE domain K3556_11580 PF00459 Inositol monophosphatase family K3556_11595 PF03884 DNA gyrase inhibitor YacG K3556_11605 PF02545 Maf-like protein K3556_11610 PF01176 Translation initiation factor 1A / IF-1 K3556_11620 PF06793 Uncharacterised protein family (UPF0262) K3556_11625 PF00815 Histidinol dehydrogenase K3556_11635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K3556_11665 PF00501 AMP-binding enzyme K3556_11665 PF13193 AMP-binding enzyme C-terminal domain K3556_11670 PF00664 ABC transporter transmembrane region K3556_11670 PF00005 ABC transporter K3556_11690 PF00581 Rhodanese-like domain K3556_11690 PF17773 UPF0176 acylphosphatase like domain K3556_11705 PF00582 Universal stress protein family K3556_11710 PF00448 SRP54-type protein, GTPase domain K3556_11710 PF02881 SRP54-type protein, helical bundle domain K3556_11710 PF02978 Signal peptide binding domain K3556_11730 PF00886 Ribosomal protein S16 K3556_11735 PF00881 Nitroreductase family K3556_11745 PF05239 PRC-barrel domain K3556_11745 PF01782 RimM N-terminal domain K3556_11755 PF01746 tRNA (Guanine-1)-methyltransferase K3556_11765 PF01245 Ribosomal protein L19 K3556_11770 PF01197 Ribosomal protein L31 K3556_11780 PF01883 Iron-sulfur cluster assembly protein K3556_11780 PF10609 NUBPL iron-transfer P-loop NTPase K3556_11785 PF00528 Binding-protein-dependent transport system inner membrane component K3556_11790 PF00528 Binding-protein-dependent transport system inner membrane component K3556_11790 PF12911 N-terminal TM domain of oligopeptide transport permease C K3556_11795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3556_11795 PF00005 ABC transporter K3556_11800 PF00171 Aldehyde dehydrogenase family K3556_11815 PF03576 Peptidase family S58 K3556_11830 PF00171 Aldehyde dehydrogenase family K3556_11840 PF00092 von Willebrand factor type A domain K3556_11840 PF12450 von Willebrand factor K3556_11840 PF12034 Domain of unknown function (DUF3520) K3556_11845 PF00892 EamA-like transporter family K3556_11850 PF00011 Hsp20/alpha crystallin family K3556_11865 PF02754 Cysteine-rich domain K3556_11865 PF13183 4Fe-4S dicluster domain K3556_11870 PF01565 FAD binding domain K3556_11875 PF02913 FAD linked oxidases, C-terminal domain K3556_11875 PF01565 FAD binding domain K3556_11900 PF17863 AAA lid domain K3556_11900 PF07726 ATPase family associated with various cellular activities (AAA) K3556_11910 PF05544 Proline racemase K3556_11915 PF02926 THUMP domain K3556_11915 PF01170 Putative RNA methylase family UPF0020 K3556_11915 PF10672 S-adenosylmethionine-dependent methyltransferase K3556_11920 PF00497 Bacterial extracellular solute-binding proteins, family 3 K3556_11925 PF00005 ABC transporter K3556_11930 PF00528 Binding-protein-dependent transport system inner membrane component K3556_11935 PF00929 Exonuclease K3556_11945 PF00571 CBS domain K3556_11950 PF00474 Sodium:solute symporter family K3556_11960 PF05191 Adenylate kinase, active site lid K3556_11965 PF00501 AMP-binding enzyme K3556_11965 PF13193 AMP-binding enzyme C-terminal domain K3556_11965 PF16177 Acetyl-coenzyme A synthetase N-terminus K3556_11975 PF00108 Thiolase, N-terminal domain K3556_11975 PF02803 Thiolase, C-terminal domain K3556_11980 PF00501 AMP-binding enzyme K3556_11980 PF13193 AMP-binding enzyme C-terminal domain K3556_11985 PF00005 ABC transporter K3556_11985 PF17912 MalK OB fold domain K3556_11990 PF00528 Binding-protein-dependent transport system inner membrane component K3556_11995 PF00528 Binding-protein-dependent transport system inner membrane component K3556_12000 PF01547 Bacterial extracellular solute-binding protein K3556_12005 PF00072 Response regulator receiver domain K3556_12005 PF00486 Transcriptional regulatory protein, C terminal K3556_12010 PF00512 His Kinase A (phospho-acceptor) domain K3556_12010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_12010 PF00672 HAMP domain K3556_12015 PF00582 Universal stress protein family K3556_12035 PF00202 Aminotransferase class-III K3556_12055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_12065 PF00873 AcrB/AcrD/AcrF family K3556_12090 PF00528 Binding-protein-dependent transport system inner membrane component K3556_12095 PF00528 Binding-protein-dependent transport system inner membrane component K3556_12100 PF00005 ABC transporter K3556_12110 PF13419 Haloacid dehalogenase-like hydrolase K3556_12135 PF01037 Lrp/AsnC ligand binding domain K3556_12145 PF01235 Sodium:alanine symporter family K3556_12150 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_12150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K3556_12165 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K3556_12165 PF00364 Biotin-requiring enzyme K3556_12165 PF02817 e3 binding domain K3556_12170 PF16078 2-oxoglutarate dehydrogenase N-terminus K3556_12170 PF16870 2-oxoglutarate dehydrogenase C-terminal K3556_12170 PF02779 Transketolase, pyrimidine binding domain K3556_12170 PF00676 Dehydrogenase E1 component K3556_12175 PF02629 CoA binding domain K3556_12175 PF00549 CoA-ligase K3556_12185 PF08442 ATP-grasp domain K3556_12185 PF00549 CoA-ligase K3556_12190 PF00056 lactate/malate dehydrogenase, NAD binding domain K3556_12190 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain K3556_12200 PF03328 HpcH/HpaI aldolase/citrate lyase family K3556_12215 PF01575 MaoC like domain K3556_12220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K3556_12225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K3556_12230 PF00890 FAD binding domain K3556_12230 PF02910 Fumarate reductase flavoprotein C-term K3556_12235 PF13085 2Fe-2S iron-sulfur cluster binding domain K3556_12235 PF13237 4Fe-4S dicluster domain K3556_12250 PF00005 ABC transporter K3556_12255 PF13472 GDSL-like Lipase/Acylhydrolase family K3556_12260 PF00072 Response regulator receiver domain K3556_12260 PF00196 Bacterial regulatory proteins, luxR family K3556_12265 PF03597 Cytochrome oxidase maturation protein cbb3-type K3556_12270 PF00403 Heavy-metal-associated domain K3556_12280 PF13746 4Fe-4S dicluster domain K3556_12280 PF12801 4Fe-4S binding domain K3556_12280 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase K3556_12285 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3556_12285 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP K3556_12300 PF00115 Cytochrome C and Quinol oxidase polypeptide I K3556_12310 PF00027 Cyclic nucleotide-binding domain K3556_12310 PF13545 Crp-like helix-turn-helix domain K3556_12315 PF04055 Radical SAM superfamily K3556_12335 PF00118 TCP-1/cpn60 chaperonin family K3556_12340 PF00166 Chaperonin 10 Kd subunit K3556_12350 PF01368 DHH family K3556_12350 PF02833 DHHA2 domain K3556_12365 PF01575 MaoC like domain K3556_12370 PF06574 FAD synthetase K3556_12370 PF01687 Riboflavin kinase K3556_12380 PF03692 Putative zinc- or iron-chelating domain K3556_12385 PF01212 Beta-eliminating lyase K3556_12390 PF12697 Alpha/beta hydrolase family K3556_12400 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase K3556_12400 PF14572 Phosphoribosyl synthetase-associated domain K3556_12405 PF09458 H-type lectin domain K3556_12410 PF07690 Major Facilitator Superfamily K3556_12415 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain K3556_12420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K3556_12420 PF02874 ATP synthase alpha/beta family, beta-barrel domain K3556_12425 PF00231 ATP synthase K3556_12430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K3556_12430 PF00306 ATP synthase alpha/beta chain, C terminal domain K3556_12430 PF02874 ATP synthase alpha/beta family, beta-barrel domain K3556_12435 PF00213 ATP synthase delta (OSCP) subunit K3556_12440 PF08241 Methyltransferase domain K3556_12450 PF00753 Metallo-beta-lactamase superfamily K3556_12450 PF16123 Hydroxyacylglutathione hydrolase C-terminus K3556_12455 PF07724 AAA domain (Cdc48 subfamily) K3556_12455 PF17871 AAA lid domain K3556_12455 PF02861 Clp amino terminal domain, pathogenicity island component K3556_12455 PF10431 C-terminal, D2-small domain, of ClpB protein K3556_12455 PF00004 ATPase family associated with various cellular activities (AAA) K3556_12460 PF00691 OmpA family K3556_12460 PF01389 OmpA-like transmembrane domain K3556_12470 PF04752 ChaC-like protein K3556_12485 PF02153 Prephenate dehydrogenase K3556_12490 PF00155 Aminotransferase class I and II K3556_12495 PF00163 Ribosomal protein S4/S9 N-terminal domain K3556_12495 PF01479 S4 domain K3556_12505 PF01070 FMN-dependent dehydrogenase K3556_12510 PF00813 FliP family K3556_12515 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K3556_12525 PF01514 Secretory protein of YscJ/FliF family K3556_12525 PF08345 Flagellar M-ring protein C-terminal K3556_12545 PF01618 MotA/TolQ/ExbB proton channel family K3556_12560 PF00771 FHIPEP family K3556_12565 PF01311 Bacterial export proteins, family 1 K3556_12570 PF01312 FlhB HrpN YscU SpaS Family K3556_12580 PF14693 Ribosomal protein TL5, C-terminal domain K3556_12580 PF01386 Ribosomal L25p family K3556_12585 PF01195 Peptidyl-tRNA hydrolase K3556_12595 PF00144 Beta-lactamase K3556_12600 PF00291 Pyridoxal-phosphate dependent enzyme K3556_12605 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K3556_12615 PF00216 Bacterial DNA-binding protein K3556_12620 PF00575 S1 RNA binding domain K3556_12630 PF02224 Cytidylate kinase K3556_12635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K3556_12640 PF02390 Putative methyltransferase K3556_12645 PF00438 S-adenosylmethionine synthetase, N-terminal domain K3556_12645 PF02773 S-adenosylmethionine synthetase, C-terminal domain K3556_12645 PF02772 S-adenosylmethionine synthetase, central domain K3556_12650 PF00795 Carbon-nitrogen hydrolase K3556_12655 PF00571 CBS domain K3556_12655 PF03471 Transporter associated domain K3556_12660 PF02130 Uncharacterized protein family UPF0054 K3556_12665 PF02562 PhoH-like protein K3556_12670 PF04055 Radical SAM superfamily K3556_12670 PF01938 TRAM domain K3556_12670 PF00919 Uncharacterized protein family UPF0004 K3556_12680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K3556_12685 PF01475 Ferric uptake regulator family K3556_12690 PF07977 FabA-like domain K3556_12695 PF00109 Beta-ketoacyl synthase, N-terminal domain K3556_12695 PF02801 Beta-ketoacyl synthase, C-terminal domain K3556_12710 PF00291 Pyridoxal-phosphate dependent enzyme K3556_12720 PF00561 alpha/beta hydrolase fold K3556_12725 PF08240 Alcohol dehydrogenase GroES-like domain K3556_12725 PF00107 Zinc-binding dehydrogenase K3556_12730 PF13378 Enolase C-terminal domain-like K3556_12730 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain K3556_12750 PF03831 PhnA domain K3556_12750 PF08274 PhnA Zinc-Ribbon K3556_12760 PF06421 GTP-binding protein LepA C-terminus K3556_12760 PF00009 Elongation factor Tu GTP binding domain K3556_12760 PF03144 Elongation factor Tu domain 2 K3556_12760 PF00679 Elongation factor G C-terminus K3556_12770 PF01037 Lrp/AsnC ligand binding domain K3556_12775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K3556_12775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K3556_12780 PF00294 pfkB family carbohydrate kinase K3556_12790 PF01451 Low molecular weight phosphotyrosine protein phosphatase K3556_12805 PF02146 Sir2 family K3556_12820 PF00830 Ribosomal L28 family K3556_12830 PF03848 Tellurite resistance protein TehB K3556_12830 PF09313 Domain of unknown function (DUF1971) K3556_12835 PF00005 ABC transporter K3556_12835 PF00664 ABC transporter transmembrane region K3556_12845 PF04408 Helicase associated domain (HA2) K3556_12845 PF00270 DEAD/DEAH box helicase K3556_12845 PF00271 Helicase conserved C-terminal domain K3556_12845 PF08482 ATP-dependent helicase C-terminal K3556_12855 PF01384 Phosphate transporter family K3556_12860 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K3556_12860 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K3556_12865 PF00202 Aminotransferase class-III K3556_12880 PF04055 Radical SAM superfamily K3556_12880 PF18693 TRAM domain K3556_12880 PF00919 Uncharacterized protein family UPF0004 K3556_12900 PF01738 Dienelactone hydrolase family K3556_12910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K3556_12910 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K3556_12910 PF02142 MGS-like domain K3556_12920 PF01336 OB-fold nucleic acid binding domain K3556_12920 PF02938 GAD domain K3556_12920 PF00152 tRNA synthetases class II (D, K and N) K3556_12925 PF00486 Transcriptional regulatory protein, C terminal K3556_12925 PF00072 Response regulator receiver domain K3556_12950 PF01842 ACT domain K3556_12950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K3556_12950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K3556_12970 PF01925 Sulfite exporter TauE/SafE K3556_12985 PF04055 Radical SAM superfamily K3556_12990 PF00512 His Kinase A (phospho-acceptor) domain K3556_12990 PF00989 PAS fold K3556_12990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_12995 PF00196 Bacterial regulatory proteins, luxR family K3556_12995 PF00072 Response regulator receiver domain K3556_13015 PF00132 Bacterial transferase hexapeptide (six repeats) K3556_13015 PF14602 Hexapeptide repeat of succinyl-transferase K3556_13015 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal K3556_13025 PF13419 Haloacid dehalogenase-like hydrolase K3556_13035 PF07687 Peptidase dimerisation domain K3556_13035 PF01546 Peptidase family M20/M25/M40 K3556_13040 PF17876 Cold shock domain K3556_13040 PF08461 Ribonuclease R winged-helix domain K3556_13040 PF08206 Ribonuclease B OB domain K3556_13040 PF00773 RNB domain K3556_13040 PF00575 S1 RNA binding domain K3556_13045 PF13406 Transglycosylase SLT domain K3556_13055 PF00834 Ribulose-phosphate 3 epimerase family K3556_13065 PF00293 NUDIX domain K3556_13070 PF03572 Peptidase family S41 K3556_13070 PF13180 PDZ domain K3556_13080 PF06415 BPG-independent PGAM N-terminus (iPGM_N) K3556_13080 PF01676 Metalloenzyme superfamily K3556_13085 PF02590 Predicted SPOUT methyltransferase K3556_13095 PF00924 Mechanosensitive ion channel K3556_13095 PF12795 Mechanosensitive ion channel porin domain K3556_13095 PF12794 Mechanosensitive ion channel inner membrane domain 1 K3556_13100 PF00330 Aconitase family (aconitate hydratase) K3556_13110 PF00694 Aconitase C-terminal domain K3556_13125 PF00180 Isocitrate/isopropylmalate dehydrogenase K3556_13165 PF00535 Glycosyl transferase family 2 K3556_13170 PF17831 Pyruvate dehydrogenase E1 component middle domain K3556_13170 PF00456 Transketolase, thiamine diphosphate binding domain K3556_13175 PF01053 Cys/Met metabolism PLP-dependent enzyme K3556_13180 PF01037 Lrp/AsnC ligand binding domain K3556_13185 PF13409 Glutathione S-transferase, N-terminal domain K3556_13195 PF01037 Lrp/AsnC ligand binding domain K3556_13225 PF01593 Flavin containing amine oxidoreductase K3556_13235 PF00106 short chain dehydrogenase K3556_13240 PF02469 Fasciclin domain K3556_13245 PF12973 ChrR Cupin-like domain K3556_13250 PF04545 Sigma-70, region 4 K3556_13250 PF04542 Sigma-70 region 2 K3556_13260 PF00881 Nitroreductase family K3556_13265 PF00850 Histone deacetylase domain K3556_13270 PF02594 Uncharacterised ACR, YggU family COG1872 K3556_13275 PF05656 Protein of unknown function (DUF805) K3556_13280 PF02660 Glycerol-3-phosphate acyltransferase K3556_13285 PF01979 Amidohydrolase family K3556_13295 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K3556_13295 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K3556_13300 PF03167 Uracil DNA glycosylase superfamily K3556_13310 PF00994 Probable molybdopterin binding domain K3556_13320 PF00873 AcrB/AcrD/AcrF family K3556_13330 PF03449 Transcription elongation factor, N-terminal K3556_13330 PF01272 Transcription elongation factor, GreA/GreB, C-term K3556_13345 PF08544 GHMP kinases C terminal K3556_13350 PF00348 Polyprenyl synthetase K3556_13360 PF13847 Methyltransferase domain K3556_13360 PF03551 Transcriptional regulator PadR-like family K3556_13380 PF00108 Thiolase, N-terminal domain K3556_13380 PF02803 Thiolase, C-terminal domain K3556_13385 PF00563 EAL domain K3556_13385 PF00196 Bacterial regulatory proteins, luxR family K3556_13390 PF03352 Methyladenine glycosylase K3556_13395 PF13406 Transglycosylase SLT domain K3556_13400 PF14698 Argininosuccinate lyase C-terminal K3556_13400 PF00206 Lyase K3556_13405 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K3556_13405 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K3556_13415 PF02132 RecR protein K3556_13415 PF13662 Toprim domain K3556_13420 PF02575 YbaB/EbfC DNA-binding family K3556_13425 PF12170 DNA polymerase III tau subunit V interacting with alpha K3556_13425 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding K3556_13425 PF12169 DNA polymerase III subunits gamma and tau domain III K3556_13435 PF03193 RsgA GTPase K3556_13445 PF00149 Calcineurin-like phosphoesterase K3556_13445 PF02872 5'-nucleotidase, C-terminal domain K3556_13450 PF00293 NUDIX domain K3556_13450 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain K3556_13450 PF09297 NADH pyrophosphatase zinc ribbon domain K3556_13460 PF00800 Prephenate dehydratase K3556_13465 PF00034 Cytochrome c K3556_13470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3556_13475 PF00528 Binding-protein-dependent transport system inner membrane component K3556_13480 PF12911 N-terminal TM domain of oligopeptide transport permease C K3556_13480 PF00528 Binding-protein-dependent transport system inner membrane component K3556_13485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3556_13485 PF00005 ABC transporter K3556_13490 PF00768 D-alanyl-D-alanine carboxypeptidase K3556_13490 PF07943 Penicillin-binding protein 5, C-terminal domain K3556_13500 PF02617 ATP-dependent Clp protease adaptor protein ClpS K3556_13505 PF05175 Methyltransferase small domain K3556_13505 PF08468 Methyltransferase small domain N-terminal K3556_13520 PF01218 Coproporphyrinogen III oxidase K3556_13530 PF02803 Thiolase, C-terminal domain K3556_13530 PF00108 Thiolase, N-terminal domain K3556_13535 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain K3556_13535 PF03900 Porphobilinogen deaminase, C-terminal domain K3556_13540 PF01208 Uroporphyrinogen decarboxylase (URO-D) K3556_13550 PF00270 DEAD/DEAH box helicase K3556_13550 PF00271 Helicase conserved C-terminal domain K3556_13555 PF01118 Semialdehyde dehydrogenase, NAD binding domain K3556_13555 PF02774 Semialdehyde dehydrogenase, dimerisation domain K3556_13585 PF00484 Carbonic anhydrase K3556_13595 PF00883 Cytosol aminopeptidase family, catalytic domain K3556_13595 PF02789 Cytosol aminopeptidase family, N-terminal domain K3556_13600 PF00877 NlpC/P60 family K3556_13610 PF03061 Thioesterase superfamily K3556_13615 PF00501 AMP-binding enzyme K3556_13615 PF14535 AMP-binding enzyme C-terminal domain K3556_13625 PF01322 Cytochrome C' K3556_13635 PF08240 Alcohol dehydrogenase GroES-like domain K3556_13635 PF00107 Zinc-binding dehydrogenase K3556_13645 PF07883 Cupin domain K3556_13650 PF03547 Membrane transport protein K3556_13660 PF00756 Putative esterase K3556_13665 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 K3556_13675 PF00581 Rhodanese-like domain K3556_13680 PF00155 Aminotransferase class I and II K3556_13695 PF00909 Ammonium Transporter Family K3556_13700 PF00543 Nitrogen regulatory protein P-II K3556_13705 PF00912 Transglycosylase K3556_13705 PF00905 Penicillin binding protein transpeptidase domain K3556_13705 PF06832 Penicillin-Binding Protein C-terminus Family K3556_13740 PF00462 Glutaredoxin K3556_13740 PF08534 Redoxin K3556_13745 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_13745 PF14759 Reductase C-terminal K3556_13755 PF03480 Bacterial extracellular solute-binding protein, family 7 K3556_13760 PF00557 Metallopeptidase family M24 K3556_13765 PF03749 Sugar fermentation stimulation protein RE domain K3556_13765 PF17746 SfsA N-terminal OB domain K3556_13770 PF02464 Competence-damaged protein K3556_13770 PF00994 Probable molybdopterin binding domain K3556_13785 PF00691 OmpA family K3556_13785 PF01389 OmpA-like transmembrane domain K3556_13790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_13790 PF03466 LysR substrate binding domain K3556_13800 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_13800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K3556_13825 PF02517 CPBP intramembrane metalloprotease K3556_13830 PF01039 Carboxyl transferase domain K3556_13830 PF17848 Acetyl-coA carboxylase zinc finger domain K3556_13835 PF02875 Mur ligase family, glutamate ligase domain K3556_13835 PF08245 Mur ligase middle domain K3556_13840 PF03969 AFG1-like ATPase K3556_13845 PF07690 Major Facilitator Superfamily K3556_13850 PF01037 Lrp/AsnC ligand binding domain K3556_13855 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K3556_13855 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K3556_13870 PF01741 Large-conductance mechanosensitive channel, MscL K3556_13875 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ K3556_13880 PF03483 B3/4 domain K3556_13880 PF03484 tRNA synthetase B5 domain K3556_13880 PF01588 Putative tRNA binding domain K3556_13880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain K3556_13880 PF03147 Ferredoxin-fold anticodon binding domain K3556_13895 PF01409 tRNA synthetases class II core domain (F) K3556_13895 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain K3556_13900 PF04542 Sigma-70 region 2 K3556_13900 PF04545 Sigma-70, region 4 K3556_13905 PF03795 YCII-related domain K3556_13915 PF00107 Zinc-binding dehydrogenase K3556_13915 PF08240 Alcohol dehydrogenase GroES-like domain K3556_13920 PF00453 Ribosomal protein L20 K3556_13925 PF01632 Ribosomal protein L35 K3556_13935 PF00224 Pyruvate kinase, barrel domain K3556_13935 PF02887 Pyruvate kinase, alpha/beta domain K3556_13960 PF01063 Amino-transferase class IV K3556_13970 PF13378 Enolase C-terminal domain-like K3556_13970 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain K3556_13980 PF03328 HpcH/HpaI aldolase/citrate lyase family K3556_13990 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit K3556_13995 PF02627 Carboxymuconolactone decarboxylase family K3556_14015 PF00005 ABC transporter K3556_14025 PF01418 Helix-turn-helix domain, rpiR family K3556_14025 PF01380 SIS domain K3556_14040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_14050 PF00120 Glutamine synthetase, catalytic domain K3556_14050 PF03951 Glutamine synthetase, beta-Grasp domain K3556_14055 PF00171 Aldehyde dehydrogenase family K3556_14060 PF00465 Iron-containing alcohol dehydrogenase K3556_14120 PF01336 OB-fold nucleic acid binding domain K3556_14120 PF14579 Helix-hairpin-helix motif K3556_14120 PF02811 PHP domain K3556_14120 PF07733 Bacterial DNA polymerase III alpha NTPase domain K3556_14120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K3556_14165 PF01794 Ferric reductase like transmembrane component K3556_14170 PF00174 Oxidoreductase molybdopterin binding domain K3556_14175 PF01645 Conserved region in glutamate synthase K3556_14185 PF00004 ATPase family associated with various cellular activities (AAA) K3556_14185 PF07724 AAA domain (Cdc48 subfamily) K3556_14185 PF17871 AAA lid domain K3556_14185 PF10431 C-terminal, D2-small domain, of ClpB protein K3556_14185 PF02861 Clp amino terminal domain, pathogenicity island component K3556_14190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family K3556_14205 PF01145 SPFH domain / Band 7 family K3556_14215 PF00817 impB/mucB/samB family K3556_14215 PF11799 impB/mucB/samB family C-terminal domain K3556_14230 PF00444 Ribosomal protein L36 K3556_14240 PF00501 AMP-binding enzyme K3556_14240 PF14535 AMP-binding enzyme C-terminal domain K3556_14245 PF00005 ABC transporter K3556_14260 PF02653 Branched-chain amino acid transport system / permease component K3556_14265 PF12399 Branched-chain amino acid ATP-binding cassette transporter K3556_14265 PF00005 ABC transporter K3556_14270 PF00501 AMP-binding enzyme K3556_14275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_14275 PF00512 His Kinase A (phospho-acceptor) domain K3556_14280 PF00072 Response regulator receiver domain K3556_14280 PF00486 Transcriptional regulatory protein, C terminal K3556_14295 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K3556_14295 PF00384 Molybdopterin oxidoreductase K3556_14295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K3556_14295 PF12838 4Fe-4S dicluster domain K3556_14295 PF01568 Molydopterin dinucleotide binding domain K3556_14320 PF13091 PLD-like domain K3556_14330 PF00144 Beta-lactamase K3556_14340 PF01966 HD domain K3556_14355 PF00561 alpha/beta hydrolase fold K3556_14355 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K3556_14365 PF00440 Bacterial regulatory proteins, tetR family K3556_14370 PF10996 Beta-Casp domain K3556_14370 PF00753 Metallo-beta-lactamase superfamily K3556_14370 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain K3556_14375 PF03641 Possible lysine decarboxylase K3556_14380 PF13533 Biotin-lipoyl like K3556_14385 PF00005 ABC transporter K3556_14405 PF02646 RmuC family K3556_14410 PF01119 DNA mismatch repair protein, C-terminal domain K3556_14410 PF08676 MutL C terminal dimerisation domain K3556_14415 PF05193 Peptidase M16 inactive domain K3556_14420 PF00675 Insulinase (Peptidase family M16) K3556_14420 PF05193 Peptidase M16 inactive domain K3556_14430 PF01252 Signal peptidase (SPase) II K3556_14435 PF01808 AICARFT/IMPCHase bienzyme K3556_14435 PF02142 MGS-like domain K3556_14445 PF01189 16S rRNA methyltransferase RsmB/F K3556_14445 PF01029 NusB family K3556_14455 PF01113 Dihydrodipicolinate reductase, N-terminus K3556_14455 PF05173 Dihydrodipicolinate reductase, C-terminus K3556_14460 PF02033 Ribosome-binding factor A K3556_14465 PF16198 tRNA pseudouridylate synthase B C-terminal domain K3556_14465 PF01509 TruB family pseudouridylate synthase (N terminal domain) K3556_14470 PF02885 Glycosyl transferase family, helical bundle domain K3556_14470 PF00591 Glycosyl transferase family, a/b domain K3556_14470 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain K3556_14490 PF00312 Ribosomal protein S15 K3556_14500 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain K3556_14500 PF03725 3' exoribonuclease family, domain 2 K3556_14500 PF00575 S1 RNA binding domain K3556_14500 PF01138 3' exoribonuclease family, domain 1 K3556_14500 PF00013 KH domain K3556_14520 PF08402 TOBE domain K3556_14520 PF00005 ABC transporter K3556_14535 PF16347 Domain of unknown function (DUF4976) K3556_14535 PF00884 Sulfatase K3556_14555 PF01970 Tripartite tricarboxylate transporter TctA family K3556_14565 PF03401 Tripartite tricarboxylate transporter family receptor K3556_14570 PF00072 Response regulator receiver domain K3556_14570 PF00486 Transcriptional regulatory protein, C terminal K3556_14575 PF00512 His Kinase A (phospho-acceptor) domain K3556_14575 PF08521 Two-component sensor kinase N-terminal K3556_14575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_14585 PF00920 Dehydratase family K3556_14590 PF16363 GDP-mannose 4,6 dehydratase K3556_14595 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain K3556_14595 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain K3556_14595 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K3556_14600 PF00664 ABC transporter transmembrane region K3556_14600 PF00005 ABC transporter K3556_14605 PF00534 Glycosyl transferases group 1 K3556_14605 PF13439 Glycosyltransferase Family 4 K3556_14640 PF13614 AAA domain K3556_14640 PF13807 G-rich domain on putative tyrosine kinase K3556_14640 PF02706 Chain length determinant protein K3556_14645 PF02397 Bacterial sugar transferase K3556_14665 PF03466 LysR substrate binding domain K3556_14665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_14670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3556_14670 PF00005 ABC transporter K3556_14675 PF00005 ABC transporter K3556_14675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3556_14680 PF12911 N-terminal TM domain of oligopeptide transport permease C K3556_14680 PF00528 Binding-protein-dependent transport system inner membrane component K3556_14685 PF00528 Binding-protein-dependent transport system inner membrane component K3556_14690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3556_14700 PF00440 Bacterial regulatory proteins, tetR family K3556_14705 PF13533 Biotin-lipoyl like K3556_14710 PF00873 AcrB/AcrD/AcrF family K3556_14745 PF03852 DNA mismatch endonuclease Vsr K3556_14750 PF00145 C-5 cytosine-specific DNA methylase K3556_14785 PF01678 Diaminopimelate epimerase K3556_14790 PF00919 Uncharacterized protein family UPF0004 K3556_14790 PF04055 Radical SAM superfamily K3556_14810 PF00355 Rieske [2Fe-2S] domain K3556_14810 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal K3556_14815 PF00032 Cytochrome b(C-terminal)/b6/petD K3556_14815 PF00033 Cytochrome b/b6/petB K3556_14820 PF02167 Cytochrome C1 family K3556_14825 PF00005 ABC transporter K3556_14830 PF00528 Binding-protein-dependent transport system inner membrane component K3556_14840 PF00892 EamA-like transporter family K3556_14845 PF01264 Chorismate synthase K3556_14865 PF00216 Bacterial DNA-binding protein K3556_14870 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus K3556_14870 PF01048 Phosphorylase superfamily K3556_14875 PF01979 Amidohydrolase family K3556_14875 PF13382 Adenine deaminase C-terminal domain K3556_14885 PF02779 Transketolase, pyrimidine binding domain K3556_14885 PF13292 1-deoxy-D-xylulose-5-phosphate synthase K3556_14885 PF02780 Transketolase, C-terminal domain K3556_14890 PF00348 Polyprenyl synthetase K3556_14895 PF02609 Exonuclease VII small subunit K3556_14900 PF00850 Histone deacetylase domain K3556_14905 PF00486 Transcriptional regulatory protein, C terminal K3556_14905 PF00072 Response regulator receiver domain K3556_14910 PF12802 MarR family K3556_14915 PF01063 Amino-transferase class IV K3556_14925 PF08331 Domain of unknown function (DUF1730) K3556_14930 PF00043 Glutathione S-transferase, C-terminal domain K3556_14930 PF13417 Glutathione S-transferase, N-terminal domain K3556_14935 PF00912 Transglycosylase K3556_14945 PF01493 GXGXG motif K3556_14945 PF00310 Glutamine amidotransferases class-II K3556_14945 PF04898 Glutamate synthase central domain K3556_14945 PF01645 Conserved region in glutamate synthase K3556_14950 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K3556_14950 PF07992 Pyridine nucleotide-disulphide oxidoreductase K3556_14955 PF02673 Bacitracin resistance protein BacA K3556_15025 PF00005 ABC transporter K3556_15025 PF17912 MalK OB fold domain K3556_15030 PF17912 MalK OB fold domain K3556_15030 PF03459 TOBE domain K3556_15030 PF00005 ABC transporter K3556_15035 PF00528 Binding-protein-dependent transport system inner membrane component K3556_15040 PF00528 Binding-protein-dependent transport system inner membrane component K3556_15075 PF00294 pfkB family carbohydrate kinase K3556_15080 PF02782 FGGY family of carbohydrate kinases, C-terminal domain K3556_15080 PF00370 FGGY family of carbohydrate kinases, N-terminal domain K3556_15085 PF01232 Mannitol dehydrogenase Rossmann domain K3556_15085 PF08125 Mannitol dehydrogenase C-terminal domain K3556_15095 PF00005 ABC transporter K3556_15095 PF08402 TOBE domain K3556_15100 PF00528 Binding-protein-dependent transport system inner membrane component K3556_15105 PF00528 Binding-protein-dependent transport system inner membrane component K3556_15115 PF00356 Bacterial regulatory proteins, lacI family K3556_15120 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter K3556_15120 PF13244 Domain of unknown function (DUF4040) K3556_15120 PF00361 Proton-conducting membrane transporter K3556_15120 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K3556_15125 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K3556_15130 PF00361 Proton-conducting membrane transporter K3556_15135 PF01899 Na+/H+ ion antiporter subunit K3556_15140 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) K3556_15145 PF03334 Na+/H+ antiporter subunit K3556_15150 PF00689 Cation transporting ATPase, C-terminus K3556_15150 PF00690 Cation transporter/ATPase, N-terminus K3556_15155 PF02608 ABC transporter substrate-binding protein PnrA-like K3556_15160 PF00005 ABC transporter K3556_15165 PF02653 Branched-chain amino acid transport system / permease component K3556_15170 PF02653 Branched-chain amino acid transport system / permease component K3556_15175 PF00689 Cation transporting ATPase, C-terminus K3556_15175 PF00690 Cation transporter/ATPase, N-terminus K3556_15180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K3556_15180 PF02896 PEP-utilising enzyme, TIM barrel domain K3556_15180 PF00391 PEP-utilising enzyme, mobile domain K3556_15190 PF13545 Crp-like helix-turn-helix domain K3556_15190 PF00027 Cyclic nucleotide-binding domain K3556_15195 PF00486 Transcriptional regulatory protein, C terminal K3556_15195 PF00072 Response regulator receiver domain K3556_15200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_15200 PF00072 Response regulator receiver domain K3556_15200 PF13426 PAS domain K3556_15225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K3556_15225 PF00364 Biotin-requiring enzyme K3556_15225 PF02817 e3 binding domain K3556_15230 PF02779 Transketolase, pyrimidine binding domain K3556_15230 PF00364 Biotin-requiring enzyme K3556_15230 PF02780 Transketolase, C-terminal domain K3556_15235 PF13193 AMP-binding enzyme C-terminal domain K3556_15235 PF00501 AMP-binding enzyme K3556_15245 PF02535 ZIP Zinc transporter K3556_15255 PF03600 Citrate transporter K3556_15255 PF02080 TrkA-C domain K3556_15260 PF05362 Lon protease (S16) C-terminal proteolytic domain K3556_15260 PF13654 AAA domain K3556_15270 PF01434 Peptidase family M41 K3556_15270 PF17862 AAA+ lid domain K3556_15270 PF00004 ATPase family associated with various cellular activities (AAA) K3556_15275 PF01738 Dienelactone hydrolase family K3556_15275 PF00156 Phosphoribosyl transferase domain K3556_15280 PF13426 PAS domain K3556_15280 PF00072 Response regulator receiver domain K3556_15280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K3556_15285 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K3556_15290 PF00561 alpha/beta hydrolase fold K3556_15295 PF08245 Mur ligase middle domain K3556_15295 PF08443 RimK-like ATP-grasp domain K3556_15295 PF02875 Mur ligase family, glutamate ligase domain K3556_15300 PF02875 Mur ligase family, glutamate ligase domain K3556_15300 PF08245 Mur ligase middle domain K3556_15300 PF08443 RimK-like ATP-grasp domain K3556_15305 PF03575 Peptidase family S51 K3556_15310 PF01979 Amidohydrolase family K3556_15315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K3556_15325 PF00005 ABC transporter K3556_15330 PF00005 ABC transporter K3556_15330 PF17912 MalK OB fold domain K3556_15335 PF01614 Bacterial transcriptional regulator K3556_15335 PF09339 IclR helix-turn-helix domain K3556_15345 PF00528 Binding-protein-dependent transport system inner membrane component K3556_15350 PF00528 Binding-protein-dependent transport system inner membrane component K3556_15355 PF02056 Family 4 glycosyl hydrolase K3556_15355 PF11975 Family 4 glycosyl hydrolase C-terminal domain K3556_15360 PF00920 Dehydratase family K3556_15370 PF05035 2-keto-3-deoxy-galactonokinase K3556_15375 PF01081 KDPG and KHG aldolase K3556_15380 PF08450 SMP-30/Gluconolactonase/LRE-like region K3556_15385 PF08532 Beta-galactosidase trimerisation domain K3556_15385 PF02449 Beta-galactosidase K3556_15385 PF08533 Beta-galactosidase C-terminal domain K3556_15405 PF02424 ApbE family K3556_15410 PF00175 Oxidoreductase NAD-binding domain K3556_15410 PF00970 Oxidoreductase FAD-binding domain K3556_15410 PF00111 2Fe-2S iron-sulfur cluster binding domain K3556_15415 PF02508 Rnf-Nqr subunit, membrane protein K3556_15420 PF02508 Rnf-Nqr subunit, membrane protein K3556_15425 PF04205 FMN-binding domain K3556_15430 PF03116 NQR2, RnfD, RnfE family K3556_15435 PF11973 NQRA C-terminal domain K3556_15435 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) K3556_15445 PF00999 Sodium/hydrogen exchanger family K3556_15445 PF03471 Transporter associated domain K3556_15460 PF00873 AcrB/AcrD/AcrF family K3556_15470 PF12802 MarR family K3556_15475 PF03480 Bacterial extracellular solute-binding protein, family 7 K3556_15485 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K3556_15490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K3556_15495 PF00528 Binding-protein-dependent transport system inner membrane component K3556_15500 PF12911 N-terminal TM domain of oligopeptide transport permease C K3556_15500 PF00528 Binding-protein-dependent transport system inner membrane component K3556_15505 PF00005 ABC transporter K3556_15505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K3556_15515 PF01557 Fumarylacetoacetate (FAA) hydrolase family K3556_15525 PF00701 Dihydrodipicolinate synthetase family K3556_15530 PF05544 Proline racemase K3556_15535 PF01266 FAD dependent oxidoreductase K3556_15545 PF02107 Flagellar L-ring protein K3556_15555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K3556_15555 PF00460 Flagella basal body rod protein K3556_15560 PF00460 Flagella basal body rod protein K3556_15560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K3556_15565 PF01313 Bacterial export proteins, family 3 K3556_15570 PF02049 Flagellar hook-basal body complex protein FliE K3556_15575 PF00460 Flagella basal body rod protein K3556_15575 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K3556_15580 PF00460 Flagella basal body rod protein K3556_15585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K3556_15585 PF02874 ATP synthase alpha/beta family, beta-barrel domain K3556_15585 PF18269 T3SS EscN ATPase C-terminal domain K3556_15595 PF07378 Flagellar protein FlbT K3556_15605 PF00669 Bacterial flagellin N-terminal helical region K3556_15605 PF00700 Bacterial flagellin C-terminal helical region K3556_15625 PF03963 Flagellar hook capping protein - N-terminal region K3556_15630 PF01636 Phosphotransferase enzyme family K3556_15635 PF03109 ABC1 family K3556_15640 PF01209 ubiE/COQ5 methyltransferase family K3556_15645 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain K3556_15645 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain K3556_15645 PF06827 Zinc finger found in FPG and IleRS K3556_15650 PF00378 Enoyl-CoA hydratase/isomerase K3556_15655 PF01649 Ribosomal protein S20 K3556_15665 PF02632 BioY family K3556_15670 PF02361 Cobalt transport protein K3556_15675 PF00005 ABC transporter K3556_15680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_15680 PF03466 LysR substrate binding domain K3556_15685 PF06155 Protein of unknown function (DUF971) K3556_15685 PF02668 Taurine catabolism dioxygenase TauD, TfdA family K3556_15690 PF01966 HD domain K3556_15705 PF13614 AAA domain K3556_15715 PF07690 Major Facilitator Superfamily K3556_15735 PF01891 Cobalt uptake substrate-specific transmembrane region K3556_15745 PF02361 Cobalt transport protein K3556_15750 PF00005 ABC transporter K3556_15755 PF00005 ABC transporter K3556_15760 PF00528 Binding-protein-dependent transport system inner membrane component K3556_15765 PF13416 Bacterial extracellular solute-binding protein K3556_15775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K3556_15775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K3556_15780 PF14748 Pyrroline-5-carboxylate reductase dimerisation K3556_15780 PF03807 NADP oxidoreductase coenzyme F420-dependent K3556_15835 PF00005 ABC transporter K3556_15835 PF00664 ABC transporter transmembrane region K3556_15840 PF00529 HlyD membrane-fusion protein of T1SS K3556_15840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K3556_15845 PF02321 Outer membrane efflux protein K3556_15885 PF00535 Glycosyl transferase family 2 K3556_15915 PF02397 Bacterial sugar transferase K3556_15920 PF13401 AAA domain K3556_15920 PF01471 Putative peptidoglycan binding domain K3556_15940 PF01694 Rhomboid family K3556_15955 PF00698 Acyl transferase domain K3556_15955 PF00668 Condensation domain K3556_15955 PF16197 Ketoacyl-synthetase C-terminal extension K3556_15955 PF00109 Beta-ketoacyl synthase, N-terminal domain K3556_15955 PF02801 Beta-ketoacyl synthase, C-terminal domain K3556_15955 PF00550 Phosphopantetheine attachment site K3556_15960 PF01648 4'-phosphopantetheinyl transferase superfamily K3556_15985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family K3556_16005 PF00665 Integrase core domain K3556_16010 PF01695 IstB-like ATP binding protein K3556_16045 PF02661 Fic/DOC family K3556_16060 PF08401 Domain of unknown function (DUF1738) K3556_16060 PF18818 Metallopeptidase superfamily domain K3556_16080 PF02796 Helix-turn-helix domain of resolvase K3556_16080 PF00239 Resolvase, N terminal domain K3556_16085 PF01526 Tn3 transposase DDE domain K3556_16085 PF13700 Domain of unknown function (DUF4158) K3556_16110 PF00884 Sulfatase K3556_16110 PF16347 Domain of unknown function (DUF4976) K3556_16160 PF01103 Surface antigen K3556_16160 PF07244 Surface antigen variable number repeat K3556_16160 PF17243 POTRA domain TamA domain 1 K3556_16175 PF05573 NosL K3556_16180 PF12679 ABC-2 family transporter protein K3556_16185 PF00005 ABC transporter K3556_16195 PF13473 Cupredoxin-like domain K3556_16195 PF18764 Nitrous oxide reductase propeller repeat K3556_16195 PF18793 Nitrous oxide reductase propeller repeat 2 K3556_16200 PF04205 FMN-binding domain K3556_16200 PF12801 4Fe-4S binding domain K3556_16210 PF00501 AMP-binding enzyme K3556_16210 PF13193 AMP-binding enzyme C-terminal domain K3556_16210 PF00668 Condensation domain K3556_16210 PF16197 Ketoacyl-synthetase C-terminal extension K3556_16210 PF00109 Beta-ketoacyl synthase, N-terminal domain K3556_16210 PF02801 Beta-ketoacyl synthase, C-terminal domain K3556_16210 PF08659 KR domain K3556_16210 PF00550 Phosphopantetheine attachment site K3556_16210 PF14765 Polyketide synthase dehydratase K3556_16215 PF00975 Thioesterase domain K3556_16215 PF00668 Condensation domain K3556_16215 PF00550 Phosphopantetheine attachment site K3556_16215 PF00501 AMP-binding enzyme K3556_16215 PF13193 AMP-binding enzyme C-terminal domain K3556_16245 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3556_16250 PF03264 NapC/NirT cytochrome c family, N-terminal region K3556_16260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K3556_16265 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K3556_16275 PF17805 AsnC-like ligand binding domain K3556_16275 PF13404 AsnC-type helix-turn-helix domain K3556_16280 PF17805 AsnC-like ligand binding domain K3556_16280 PF13404 AsnC-type helix-turn-helix domain K3556_16285 PF13404 AsnC-type helix-turn-helix domain K3556_16285 PF17805 AsnC-like ligand binding domain K3556_16290 PF13186 Iron-sulfur cluster-binding domain K3556_16290 PF04055 Radical SAM superfamily K3556_16310 PF00155 Aminotransferase class I and II K3556_16335 PF00510 Cytochrome c oxidase subunit III K3556_16340 PF00092 von Willebrand factor type A domain K3556_16345 PF07728 AAA domain (dynein-related subfamily) K3556_16345 PF08406 CbbQ/NirQ/NorQ C-terminal K3556_16350 PF00115 Cytochrome C and Quinol oxidase polypeptide I K3556_16355 PF00034 Cytochrome c K3556_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K3556_16360 PF03466 LysR substrate binding domain K3556_16385 PF01322 Cytochrome C' K3556_16390 PF00034 Cytochrome c