locus-tag class description AVFI_00005 PF00308 Bacterial dnaA protein AVFI_00005 PF08299 Bacterial dnaA protein helix-turn-helix AVFI_00005 PF11638 DnaA N-terminal domain AVFI_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AVFI_00010 PF02767 DNA polymerase III beta subunit, central domain AVFI_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AVFI_00015 PF02463 RecF/RecN/SMC N terminal domain AVFI_00020 PF00204 DNA gyrase B AVFI_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AVFI_00020 PF18053 DNA gyrase B subunit insert domain AVFI_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_00020 PF01751 Toprim domain AVFI_00025 PF00011 Hsp20/alpha crystallin family AVFI_00030 PF00155 Aminotransferase class I and II AVFI_00035 PF02091 Glycyl-tRNA synthetase alpha subunit AVFI_00040 PF05746 DALR anticodon binding domain AVFI_00040 PF02092 Glycyl-tRNA synthetase beta subunit AVFI_00045 PF00128 Alpha amylase, catalytic domain AVFI_00055 PF01206 Sulfurtransferase TusA AVFI_00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_00065 PF03466 LysR substrate binding domain AVFI_00070 PF05360 yiaA/B two helix domain AVFI_00075 PF08240 Alcohol dehydrogenase GroES-like domain AVFI_00075 PF00107 Zinc-binding dehydrogenase AVFI_00080 PF02803 Thiolase, C-terminal domain AVFI_00080 PF00108 Thiolase, N-terminal domain AVFI_00085 PF00378 Enoyl-CoA hydratase/isomerase AVFI_00085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVFI_00085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVFI_00090 PF09186 Domain of unknown function (DUF1949) AVFI_00090 PF01205 Uncharacterized protein family UPF0029 AVFI_00095 PF02386 Cation transport protein AVFI_00100 PF12724 Flavodoxin domain AVFI_00110 PF00675 Insulinase (Peptidase family M16) AVFI_00110 PF05193 Peptidase M16 inactive domain AVFI_00120 PF00654 Voltage gated chloride channel AVFI_00125 PF13667 ThiC-associated domain AVFI_00125 PF01964 Radical SAM ThiC family AVFI_00130 PF02581 Thiamine monophosphate synthase AVFI_00135 PF00899 ThiF family AVFI_00145 PF05690 Thiazole biosynthesis protein ThiG AVFI_00150 PF04055 Radical SAM superfamily AVFI_00150 PF06968 Biotin and Thiamin Synthesis associated domain AVFI_00155 PF01321 Creatinase/Prolidase N-terminal domain AVFI_00155 PF00557 Metallopeptidase family M24 AVFI_00155 PF01321 Creatinase/Prolidase N-terminal domain AVFI_00155 PF00557 Metallopeptidase family M24 AVFI_00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_00160 PF03466 LysR substrate binding domain AVFI_00165 PF07690 Major Facilitator Superfamily AVFI_00180 PF02646 RmuC family AVFI_00185 PF01209 ubiE/COQ5 methyltransferase family AVFI_00190 PF02036 SCP-2 sterol transfer family AVFI_00195 PF03109 ABC1 family AVFI_00200 PF02416 mttA/Hcf106 family AVFI_00205 PF02416 mttA/Hcf106 family AVFI_00210 PF00902 Sec-independent protein translocase protein (TatC) AVFI_00220 PF01026 TatD related DNase AVFI_00225 PF00490 Delta-aminolevulinic acid dehydratase AVFI_00230 PF02541 Ppx/GppA phosphatase family AVFI_00235 PF00270 DEAD/DEAH box helicase AVFI_00235 PF00271 Helicase conserved C-terminal domain AVFI_00240 PF00085 Thioredoxin AVFI_00245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVFI_00245 PF07498 Rho termination factor, N-terminal domain AVFI_00245 PF07497 Rho termination factor, RNA-binding domain AVFI_00255 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AVFI_00260 PF00111 2Fe-2S iron-sulfur cluster binding domain AVFI_00260 PF00970 Oxidoreductase FAD-binding domain AVFI_00260 PF00175 Oxidoreductase NAD-binding domain AVFI_00265 PF00175 Oxidoreductase NAD-binding domain AVFI_00265 PF00970 Oxidoreductase FAD-binding domain AVFI_00270 PF07219 HemY protein N-terminus AVFI_00270 PF07719 Tetratricopeptide repeat AVFI_00275 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AVFI_00280 PF02602 Uroporphyrinogen-III synthase HemD AVFI_00285 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AVFI_00285 PF03900 Porphobilinogen deaminase, C-terminal domain AVFI_00290 PF12633 Adenylate cyclase NT domain AVFI_00290 PF01295 Adenylate cyclase, class-I AVFI_00295 PF00580 UvrD/REP helicase N-terminal domain AVFI_00295 PF13361 UvrD-like helicase C-terminal domain AVFI_00300 PF00892 EamA-like transporter family AVFI_00305 PF16124 RecQ zinc-binding AVFI_00305 PF00570 HRDC domain AVFI_00305 PF00271 Helicase conserved C-terminal domain AVFI_00305 PF09382 RQC domain AVFI_00305 PF00270 DEAD/DEAH box helicase AVFI_00315 PF07690 Major Facilitator Superfamily AVFI_00320 PF02592 Putative vitamin uptake transporter AVFI_00330 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AVFI_00330 PF01367 5'-3' exonuclease, C-terminal SAM fold AVFI_00330 PF00476 DNA polymerase family A AVFI_00330 PF01612 3'-5' exonuclease AVFI_00335 PF01926 50S ribosome-binding GTPase AVFI_00340 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVFI_00350 PF04220 Der GTPase activator (YihI) AVFI_00355 PF10675 Protein of unknown function (DUF2489) AVFI_00360 PF04055 Radical SAM superfamily AVFI_00360 PF06969 HemN C-terminal domain AVFI_00365 PF01037 Lrp/AsnC ligand binding domain AVFI_00370 PF04445 Putative SAM-dependent methyltransferase AVFI_00375 PF00582 Universal stress protein family AVFI_00380 PF00210 Ferritin-like domain AVFI_00385 PF10625 Universal stress protein B (UspB) AVFI_00395 PF00563 EAL domain AVFI_00395 PF08495 FIST N domain AVFI_00395 PF10442 FIST C domain AVFI_00395 PF00990 Diguanylate cyclase, GGDEF domain AVFI_00400 PF03942 DTW domain AVFI_00410 PF01081 KDPG and KHG aldolase AVFI_00415 PF03707 Bacterial signalling protein N terminal repeat AVFI_00415 PF00990 Diguanylate cyclase, GGDEF domain AVFI_00415 PF00563 EAL domain AVFI_00420 PF00962 Adenosine/AMP deaminase AVFI_00425 PF00990 Diguanylate cyclase, GGDEF domain AVFI_00425 PF00360 Phytochrome region AVFI_00425 PF00563 EAL domain AVFI_00425 PF01590 GAF domain AVFI_00430 PF00072 Response regulator receiver domain AVFI_00430 PF00158 Sigma-54 interaction domain AVFI_00430 PF02954 Bacterial regulatory protein, Fis family AVFI_00435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_00435 PF00512 His Kinase A (phospho-acceptor) domain AVFI_00435 PF00989 PAS fold AVFI_00445 PF00120 Glutamine synthetase, catalytic domain AVFI_00445 PF03951 Glutamine synthetase, beta-Grasp domain AVFI_00450 PF00679 Elongation factor G C-terminus AVFI_00450 PF00009 Elongation factor Tu GTP binding domain AVFI_00450 PF03144 Elongation factor Tu domain 2 AVFI_00455 PF03631 Virulence factor BrkB AVFI_00460 PF02580 D-Tyr-tRNA(Tyr) deacylase AVFI_00465 PF00583 Acetyltransferase (GNAT) family AVFI_00465 PF09500 Putative thioesterase (yiiD_Cterm) AVFI_00470 PF12105 SpoU, rRNA methylase, C-terminal AVFI_00470 PF00588 SpoU rRNA Methylase family AVFI_00475 PF13291 ACT domain AVFI_00475 PF04607 Region found in RelA / SpoT proteins AVFI_00475 PF02824 TGS domain AVFI_00480 PF01192 RNA polymerase Rpb6 AVFI_00485 PF00625 Guanylate kinase AVFI_00500 PF00892 EamA-like transporter family AVFI_00565 PF04002 RadC-like JAB domain AVFI_00575 PF00075 RNase H AVFI_00580 PF12161 HsdM N-terminal domain AVFI_00580 PF02384 N-6 DNA Methylase AVFI_00585 PF01420 Type I restriction modification DNA specificity domain AVFI_00590 PF12008 Type I restriction and modification enzyme - subunit R C terminal AVFI_00590 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVFI_00590 PF18766 SWI2/SNF2 ATPase AVFI_00610 PF08340 Domain of unknown function (DUF1732) AVFI_00610 PF03755 YicC-like family, N-terminal region AVFI_00615 PF01138 3' exoribonuclease family, domain 1 AVFI_00615 PF03725 3' exoribonuclease family, domain 2 AVFI_00620 PF00156 Phosphoribosyl transferase domain AVFI_00630 PF00072 Response regulator receiver domain AVFI_00630 PF00486 Transcriptional regulatory protein, C terminal AVFI_00635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_00635 PF00512 His Kinase A (phospho-acceptor) domain AVFI_00635 PF00672 HAMP domain AVFI_00640 PF00860 Permease family AVFI_00645 PF00156 Phosphoribosyl transferase domain AVFI_00650 PF00561 alpha/beta hydrolase fold AVFI_00660 PF00575 S1 RNA binding domain AVFI_00660 PF17674 HHH domain AVFI_00660 PF09371 Tex-like protein N-terminal domain AVFI_00660 PF16921 Tex protein YqgF-like domain AVFI_00665 PF01272 Transcription elongation factor, GreA/GreB, C-term AVFI_00665 PF03449 Transcription elongation factor, N-terminal AVFI_00670 PF03279 Bacterial lipid A biosynthesis acyltransferase AVFI_00675 PF00440 Bacterial regulatory proteins, tetR family AVFI_00680 PF04127 DNA / pantothenate metabolism flavoprotein AVFI_00680 PF02441 Flavoprotein AVFI_00685 PF04002 RadC-like JAB domain AVFI_00690 PF00830 Ribosomal L28 family AVFI_00695 PF00471 Ribosomal protein L33 AVFI_00710 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AVFI_00710 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AVFI_00710 PF06827 Zinc finger found in FPG and IleRS AVFI_00715 PF05686 Glycosyl transferase family 90 AVFI_00720 PF01467 Cytidylyltransferase-like AVFI_00725 PF00535 Glycosyl transferase family 2 AVFI_00730 PF00535 Glycosyl transferase family 2 AVFI_00735 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AVFI_00745 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AVFI_00760 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AVFI_00770 PF01370 NAD dependent epimerase/dehydratase family AVFI_00775 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AVFI_00775 PF00753 Metallo-beta-lactamase superfamily AVFI_00775 PF10996 Beta-Casp domain AVFI_00785 PF00440 Bacterial regulatory proteins, tetR family AVFI_00785 PF08360 QacR-like protein, C-terminal region AVFI_00790 PF06082 Exopolysaccharide biosynthesis protein YbjH AVFI_00800 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF AVFI_00810 PF02563 Polysaccharide biosynthesis/export protein AVFI_00810 PF10531 SLBB domain AVFI_00810 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AVFI_00820 PF01451 Low molecular weight phosphotyrosine protein phosphatase AVFI_00825 PF02706 Chain length determinant protein AVFI_00825 PF13614 AAA domain AVFI_00825 PF13807 G-rich domain on putative tyrosine kinase AVFI_00830 PF01565 FAD binding domain AVFI_00830 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AVFI_00855 PF08485 Polysaccharide biosynthesis protein C-terminal AVFI_00855 PF02719 Polysaccharide biosynthesis protein AVFI_00860 PF04321 RmlD substrate binding domain AVFI_00865 PF02350 UDP-N-acetylglucosamine 2-epimerase AVFI_00880 PF00953 Glycosyl transferase family 4 AVFI_00885 PF01507 Phosphoadenosine phosphosulfate reductase family AVFI_00890 PF03600 Citrate transporter AVFI_00890 PF02080 TrkA-C domain AVFI_00900 PF00009 Elongation factor Tu GTP binding domain AVFI_00905 PF03559 NDP-hexose 2,3-dehydratase AVFI_00910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVFI_00915 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVFI_00930 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVFI_00930 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVFI_00940 PF01507 Phosphoadenosine phosphosulfate reductase family AVFI_00945 PF16363 GDP-mannose 4,6 dehydratase AVFI_00950 PF00483 Nucleotidyl transferase AVFI_00965 PF00535 Glycosyl transferase family 2 AVFI_00965 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AVFI_00970 PF00535 Glycosyl transferase family 2 AVFI_00975 PF01757 Acyltransferase family AVFI_00980 PF13439 Glycosyltransferase Family 4 AVFI_00980 PF00534 Glycosyl transferases group 1 AVFI_00985 PF05159 Capsule polysaccharide biosynthesis protein AVFI_00990 PF02397 Bacterial sugar transferase AVFI_00995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AVFI_00995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AVFI_00995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AVFI_01005 PF16363 GDP-mannose 4,6 dehydratase AVFI_01010 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AVFI_01010 PF01676 Metalloenzyme superfamily AVFI_01020 PF01554 MatE AVFI_01025 PF00166 Chaperonin 10 Kd subunit AVFI_01030 PF00118 TCP-1/cpn60 chaperonin family AVFI_01035 PF04480 Protein of unknown function (DUF559) AVFI_01040 PF00121 Triosephosphate isomerase AVFI_01055 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AVFI_01060 PF06005 Cell division protein ZapB AVFI_01065 PF03737 Aldolase/RraA AVFI_01070 PF01040 UbiA prenyltransferase family AVFI_01075 PF00485 Phosphoribulokinase / Uridine kinase family AVFI_01080 PF06794 Uncharacterised protein family (UPF0270) AVFI_01085 PF00561 alpha/beta hydrolase fold AVFI_01095 PF00005 ABC transporter AVFI_01095 PF12848 ABC transporter AVFI_01100 PF02525 Flavodoxin-like fold AVFI_01105 PF00999 Sodium/hydrogen exchanger family AVFI_01105 PF02254 TrkA-N domain AVFI_01115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVFI_01120 PF04102 SlyX AVFI_01130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVFI_01130 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AVFI_01135 PF08348 YheO-like PAS domain AVFI_01135 PF13309 HTH domain AVFI_01140 PF02635 DsrE/DsrF-like family AVFI_01145 PF02635 DsrE/DsrF-like family AVFI_01155 PF00164 Ribosomal protein S12/S23 AVFI_01160 PF00177 Ribosomal protein S7p/S5e AVFI_01165 PF00009 Elongation factor Tu GTP binding domain AVFI_01165 PF03764 Elongation factor G, domain IV AVFI_01165 PF14492 Elongation Factor G, domain II AVFI_01165 PF03144 Elongation factor Tu domain 2 AVFI_01165 PF00679 Elongation factor G C-terminus AVFI_01170 PF00009 Elongation factor Tu GTP binding domain AVFI_01170 PF03144 Elongation factor Tu domain 2 AVFI_01170 PF03143 Elongation factor Tu C-terminal domain AVFI_01175 PF00338 Ribosomal protein S10p/S20e AVFI_01180 PF00297 Ribosomal protein L3 AVFI_01185 PF00573 Ribosomal protein L4/L1 family AVFI_01190 PF00276 Ribosomal protein L23 AVFI_01195 PF00181 Ribosomal Proteins L2, RNA binding domain AVFI_01195 PF03947 Ribosomal Proteins L2, C-terminal domain AVFI_01200 PF00203 Ribosomal protein S19 AVFI_01205 PF00237 Ribosomal protein L22p/L17e AVFI_01210 PF07650 KH domain AVFI_01210 PF00189 Ribosomal protein S3, C-terminal domain AVFI_01215 PF00252 Ribosomal protein L16p/L10e AVFI_01220 PF00831 Ribosomal L29 protein AVFI_01225 PF00366 Ribosomal protein S17 AVFI_01230 PF00238 Ribosomal protein L14p/L23e AVFI_01235 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AVFI_01240 PF00673 ribosomal L5P family C-terminus AVFI_01240 PF00281 Ribosomal protein L5 AVFI_01245 PF00253 Ribosomal protein S14p/S29e AVFI_01250 PF00410 Ribosomal protein S8 AVFI_01255 PF00347 Ribosomal protein L6 AVFI_01260 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AVFI_01265 PF03719 Ribosomal protein S5, C-terminal domain AVFI_01265 PF00333 Ribosomal protein S5, N-terminal domain AVFI_01270 PF00327 Ribosomal protein L30p/L7e AVFI_01275 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AVFI_01280 PF00344 SecY translocase AVFI_01285 PF00444 Ribosomal protein L36 AVFI_01290 PF00416 Ribosomal protein S13/S18 AVFI_01295 PF00411 Ribosomal protein S11 AVFI_01300 PF00163 Ribosomal protein S4/S9 N-terminal domain AVFI_01300 PF01479 S4 domain AVFI_01305 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AVFI_01305 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AVFI_01305 PF01000 RNA polymerase Rpb3/RpoA insert domain AVFI_01310 PF01196 Ribosomal protein L17 AVFI_01315 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AVFI_01320 PF02875 Mur ligase family, glutamate ligase domain AVFI_01320 PF08245 Mur ligase middle domain AVFI_01320 PF01225 Mur ligase family, catalytic domain AVFI_01325 PF02441 Flavoprotein AVFI_01335 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_01340 PF00005 ABC transporter AVFI_01345 PF00271 Helicase conserved C-terminal domain AVFI_01345 PF12137 RNA polymerase recycling family C-terminal AVFI_01345 PF00176 SNF2 family N-terminal domain AVFI_01345 PF18339 RapA N-terminal Tudor like domain 1 AVFI_01345 PF18337 RapA N-terminal Tudor like domain AVFI_01350 PF00849 RNA pseudouridylate synthase AVFI_01355 PF00582 Universal stress protein family AVFI_01370 PF01316 Arginine repressor, DNA binding domain AVFI_01370 PF02863 Arginine repressor, C-terminal domain AVFI_01375 PF00056 lactate/malate dehydrogenase, NAD binding domain AVFI_01375 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AVFI_01380 PF00348 Polyprenyl synthetase AVFI_01385 PF00829 Ribosomal prokaryotic L21 protein AVFI_01390 PF01016 Ribosomal L27 protein AVFI_01395 PF01018 GTP1/OBG AVFI_01395 PF01926 50S ribosome-binding GTPase AVFI_01400 PF06738 Putative threonine/serine exporter AVFI_01405 PF12821 Threonine/Serine exporter, ThrE AVFI_01410 PF00186 Dihydrofolate reductase AVFI_01415 PF00149 Calcineurin-like phosphoesterase AVFI_01420 PF00398 Ribosomal RNA adenine dimethylase AVFI_01425 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AVFI_01430 PF09312 SurA N-terminal domain AVFI_01435 PF04453 LPS transport system D AVFI_01435 PF03968 OstA-like protein AVFI_01440 PF00226 DnaJ domain AVFI_01440 PF05099 Tellurite resistance protein TerB AVFI_01450 PF00694 Aconitase C-terminal domain AVFI_01455 PF00330 Aconitase family (aconitate hydratase) AVFI_01460 PF00180 Isocitrate/isopropylmalate dehydrogenase AVFI_01465 PF00682 HMGL-like AVFI_01465 PF08502 LeuA allosteric (dimerisation) domain AVFI_01480 PF00873 AcrB/AcrD/AcrF family AVFI_01490 PF00772 DnaB-like helicase N terminal domain AVFI_01490 PF03796 DnaB-like helicase C terminal domain AVFI_01495 PF00842 Alanine racemase, C-terminal domain AVFI_01495 PF01168 Alanine racemase, N-terminal domain AVFI_01505 PF00342 Phosphoglucose isomerase AVFI_01515 PF01475 Ferric uptake regulator family AVFI_01520 PF01207 Dihydrouridine synthase (Dus) AVFI_01535 PF00667 FAD binding domain AVFI_01535 PF00258 Flavodoxin AVFI_01535 PF00175 Oxidoreductase NAD-binding domain AVFI_01540 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AVFI_01540 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVFI_01545 PF01507 Phosphoadenosine phosphosulfate reductase family AVFI_01555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVFI_01555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AVFI_01560 PF04225 Opacity-associated protein A LysM-like domain AVFI_01560 PF08525 Opacity-associated protein A N-terminal motif AVFI_01570 PF13673 Acetyltransferase (GNAT) domain AVFI_01580 PF00149 Calcineurin-like phosphoesterase AVFI_01580 PF02872 5'-nucleotidase, C-terminal domain AVFI_01585 PF01507 Phosphoadenosine phosphosulfate reductase family AVFI_01590 PF00009 Elongation factor Tu GTP binding domain AVFI_01595 PF02080 TrkA-C domain AVFI_01595 PF03600 Citrate transporter AVFI_01615 PF12704 MacB-like periplasmic core domain AVFI_01615 PF02687 FtsX-like permease family AVFI_01620 PF00005 ABC transporter AVFI_01635 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AVFI_01640 PF06526 Protein of unknown function (DUF1107) AVFI_01645 PF01625 Peptide methionine sulfoxide reductase AVFI_01650 PF07244 Surface antigen variable number repeat AVFI_01650 PF01103 Surface antigen AVFI_01650 PF17243 POTRA domain TamA domain 1 AVFI_01655 PF04357 TamB, inner membrane protein subunit of TAM complex AVFI_01710 PF00999 Sodium/hydrogen exchanger family AVFI_01715 PF02310 B12 binding domain AVFI_01715 PF02965 Vitamin B12 dependent methionine synthase, activation domain AVFI_01715 PF00809 Pterin binding enzyme AVFI_01715 PF02574 Homocysteine S-methyltransferase AVFI_01715 PF02607 B12 binding domain AVFI_01720 PF00696 Amino acid kinase family AVFI_01720 PF01842 ACT domain AVFI_01725 PF00266 Aminotransferase class-V AVFI_01735 PF00005 ABC transporter AVFI_01735 PF17760 UvrA interaction domain AVFI_01735 PF17755 UvrA DNA-binding domain AVFI_01740 PF00483 Nucleotidyl transferase AVFI_01750 PF13439 Glycosyltransferase Family 4 AVFI_01750 PF00534 Glycosyl transferases group 1 AVFI_01755 PF00534 Glycosyl transferases group 1 AVFI_01780 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AVFI_01780 PF10531 SLBB domain AVFI_01780 PF02563 Polysaccharide biosynthesis/export protein AVFI_01790 PF02397 Bacterial sugar transferase AVFI_01795 PF00436 Single-strand binding protein family AVFI_01810 PF00990 Diguanylate cyclase, GGDEF domain AVFI_01810 PF00563 EAL domain AVFI_01810 PF17157 Gammaproteobacterial periplasmic sensor domain AVFI_01830 PF00263 Bacterial type II and III secretion system protein AVFI_01830 PF03958 Bacterial type II/III secretion system short domain AVFI_01835 PF13401 AAA domain AVFI_01835 PF01471 Putative peptidoglycan binding domain AVFI_01845 PF00437 Type II/IV secretion system protein AVFI_01845 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AVFI_01850 PF00482 Type II secretion system (T2SS), protein F AVFI_01860 PF07963 Prokaryotic N-terminal methylation motif AVFI_01865 PF07963 Prokaryotic N-terminal methylation motif AVFI_01865 PF00114 Pilin (bacterial filament) AVFI_01900 PF04085 rod shape-determining protein MreC AVFI_01905 PF04093 rod shape-determining protein MreD AVFI_01910 PF02545 Maf-like protein AVFI_01915 PF10150 Ribonuclease E/G family AVFI_01915 PF00575 S1 RNA binding domain AVFI_01920 PF13116 Protein of unknown function AVFI_01920 PF13502 AsmA-like C-terminal region AVFI_01925 PF00795 Carbon-nitrogen hydrolase AVFI_01930 PF01523 Putative modulator of DNA gyrase AVFI_01935 PF04751 Protein of unknown function (DUF615) AVFI_01955 PF00571 CBS domain AVFI_01955 PF01769 Divalent cation transporter AVFI_01955 PF03448 MgtE intracellular N domain AVFI_01960 PF00381 PTS HPr component phosphorylation site AVFI_01965 PF03668 P-loop ATPase protein family AVFI_01970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVFI_01975 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AVFI_01980 PF04963 Sigma-54 factor, core binding domain AVFI_01980 PF00309 Sigma-54 factor, Activator interacting domain (AID) AVFI_01980 PF04552 Sigma-54, DNA binding domain AVFI_01985 PF00005 ABC transporter AVFI_01985 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVFI_01990 PF03968 OstA-like protein AVFI_02005 PF01380 SIS domain AVFI_02005 PF00571 CBS domain AVFI_02010 PF01699 Sodium/calcium exchanger protein AVFI_02015 PF00005 ABC transporter AVFI_02020 PF02405 Permease MlaE AVFI_02025 PF02470 MlaD protein AVFI_02030 PF05494 MlaC protein AVFI_02040 PF01722 BolA-like protein AVFI_02045 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVFI_02050 PF01553 Acyltransferase AVFI_02055 PF00293 NUDIX domain AVFI_02065 PF01042 Endoribonuclease L-PSP AVFI_02070 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AVFI_02070 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AVFI_02075 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVFI_02075 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVFI_02080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVFI_02080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVFI_02090 PF06877 Regulator of ribonuclease activity B AVFI_02100 PF08264 Anticodon-binding domain of tRNA AVFI_02100 PF00133 tRNA synthetases class I (I, L, M and V) AVFI_02100 PF10458 Valyl tRNA synthetase tRNA binding arm AVFI_02105 PF04364 DNA polymerase III chi subunit, HolC AVFI_02110 PF00883 Cytosol aminopeptidase family, catalytic domain AVFI_02110 PF02789 Cytosol aminopeptidase family, N-terminal domain AVFI_02115 PF03739 Lipopolysaccharide export system permease LptF/LptG AVFI_02120 PF03739 Lipopolysaccharide export system permease LptF/LptG AVFI_02140 PF01219 Prokaryotic diacylglycerol kinase AVFI_02190 PF01464 Transglycosylase SLT domain AVFI_02190 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AVFI_02195 PF04362 Bacterial Fe(2+) trafficking AVFI_02200 PF00633 Helix-hairpin-helix motif AVFI_02200 PF00730 HhH-GPD superfamily base excision DNA repair protein AVFI_02200 PF14815 NUDIX domain AVFI_02205 PF02390 Putative methyltransferase AVFI_02210 PF04960 Glutaminase AVFI_02215 PF04055 Radical SAM superfamily AVFI_02215 PF06969 HemN C-terminal domain AVFI_02220 PF01725 Ham1 family AVFI_02230 PF02594 Uncharacterised ACR, YggU family COG1872 AVFI_02235 PF02325 YGGT family AVFI_02240 PF03807 NADP oxidoreductase coenzyme F420-dependent AVFI_02240 PF14748 Pyrroline-5-carboxylate reductase dimerisation AVFI_02245 PF01168 Alanine racemase, N-terminal domain AVFI_02250 PF00437 Type II/IV secretion system protein AVFI_02255 PF00437 Type II/IV secretion system protein AVFI_02260 PF03652 Holliday junction resolvase AVFI_02265 PF02622 Uncharacterized ACR, COG1678 AVFI_02270 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AVFI_02270 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AVFI_02275 PF04452 RNA methyltransferase AVFI_02280 PF04231 Endonuclease I AVFI_02285 PF10263 SprT-like family AVFI_02285 PF17283 SprT-like zinc ribbon domain AVFI_02290 PF02773 S-adenosylmethionine synthetase, C-terminal domain AVFI_02290 PF02772 S-adenosylmethionine synthetase, central domain AVFI_02290 PF00438 S-adenosylmethionine synthetase, N-terminal domain AVFI_02295 PF02779 Transketolase, pyrimidine binding domain AVFI_02295 PF02780 Transketolase, C-terminal domain AVFI_02295 PF00456 Transketolase, thiamine diphosphate binding domain AVFI_02300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVFI_02300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVFI_02305 PF00162 Phosphoglycerate kinase AVFI_02310 PF01116 Fructose-bisphosphate aldolase class-II AVFI_02315 PF00270 DEAD/DEAH box helicase AVFI_02315 PF00271 Helicase conserved C-terminal domain AVFI_02320 PF05175 Methyltransferase small domain AVFI_02325 PF05525 Branched-chain amino acid transport protein AVFI_02330 PF00258 Flavodoxin AVFI_02335 PF00589 Phage integrase family AVFI_02335 PF02899 Phage integrase, N-terminal SAM-like domain AVFI_02340 PF10411 Disulfide bond isomerase protein N-terminus AVFI_02340 PF13098 Thioredoxin-like domain AVFI_02345 PF01368 DHH family AVFI_02345 PF02272 DHHA1 domain AVFI_02345 PF17768 RecJ OB domain AVFI_02355 PF00152 tRNA synthetases class II (D, K and N) AVFI_02360 PF00158 Sigma-54 interaction domain AVFI_02360 PF02954 Bacterial regulatory protein, Fis family AVFI_02360 PF00072 Response regulator receiver domain AVFI_02365 PF02976 DNA mismatch repair enzyme MutH AVFI_02370 PF00293 NUDIX domain AVFI_02375 PF05524 PEP-utilising enzyme, N-terminal AVFI_02375 PF00391 PEP-utilising enzyme, mobile domain AVFI_02375 PF02896 PEP-utilising enzyme, TIM barrel domain AVFI_02375 PF01590 GAF domain AVFI_02385 PF01790 Prolipoprotein diacylglyceryl transferase AVFI_02390 PF00303 Thymidylate synthase AVFI_02395 PF02690 Na+/Pi-cotransporter AVFI_02400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_02400 PF03466 LysR substrate binding domain AVFI_02405 PF01022 Bacterial regulatory protein, arsR family AVFI_02410 PF01649 Ribosomal protein S20 AVFI_02415 PF03023 Lipid II flippase MurJ AVFI_02420 PF06574 FAD synthetase AVFI_02420 PF01687 Riboflavin kinase AVFI_02425 PF06827 Zinc finger found in FPG and IleRS AVFI_02425 PF08264 Anticodon-binding domain of tRNA AVFI_02425 PF00133 tRNA synthetases class I (I, L, M and V) AVFI_02430 PF01252 Signal peptidase (SPase) II AVFI_02435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVFI_02440 PF02401 LytB protein AVFI_02445 PF01113 Dihydrodipicolinate reductase, N-terminus AVFI_02445 PF05173 Dihydrodipicolinate reductase, C-terminus AVFI_02450 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AVFI_02450 PF00117 Glutamine amidotransferase class-I AVFI_02455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVFI_02455 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AVFI_02455 PF02142 MGS-like domain AVFI_02460 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AVFI_02465 PF13609 Gram-negative porin AVFI_02470 PF01272 Transcription elongation factor, GreA/GreB, C-term AVFI_02470 PF03449 Transcription elongation factor, N-terminal AVFI_02475 PF01985 CRS1 / YhbY (CRM) domain AVFI_02480 PF01728 FtsJ-like methyltransferase AVFI_02485 PF00004 ATPase family associated with various cellular activities (AAA) AVFI_02485 PF17862 AAA+ lid domain AVFI_02485 PF06480 FtsH Extracellular AVFI_02485 PF01434 Peptidase family M41 AVFI_02490 PF00809 Pterin binding enzyme AVFI_02495 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVFI_02495 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVFI_02495 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVFI_02495 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVFI_02500 PF03840 Preprotein translocase SecG subunit AVFI_02515 PF02576 RimP N-terminal domain AVFI_02515 PF17384 RimP C-terminal SH3 domain AVFI_02520 PF13184 NusA-like KH domain AVFI_02520 PF08529 NusA N-terminal domain AVFI_02520 PF00575 S1 RNA binding domain AVFI_02525 PF11987 Translation-initiation factor 2 AVFI_02525 PF08364 Bacterial translation initiation factor IF-2 associated region AVFI_02525 PF00009 Elongation factor Tu GTP binding domain AVFI_02525 PF04760 Translation initiation factor IF-2, N-terminal region AVFI_02530 PF02033 Ribosome-binding factor A AVFI_02535 PF01509 TruB family pseudouridylate synthase (N terminal domain) AVFI_02535 PF09157 Pseudouridine synthase II TruB, C-terminal AVFI_02535 PF16198 tRNA pseudouridylate synthase B C-terminal domain AVFI_02540 PF00312 Ribosomal protein S15 AVFI_02545 PF00013 KH domain AVFI_02545 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AVFI_02545 PF01138 3' exoribonuclease family, domain 1 AVFI_02545 PF03725 3' exoribonuclease family, domain 2 AVFI_02545 PF00575 S1 RNA binding domain AVFI_02550 PF13181 Tetratricopeptide repeat AVFI_02550 PF07719 Tetratricopeptide repeat AVFI_02560 PF01136 Peptidase family U32 AVFI_02565 PF01136 Peptidase family U32 AVFI_02570 PF03707 Bacterial signalling protein N terminal repeat AVFI_02570 PF00990 Diguanylate cyclase, GGDEF domain AVFI_02570 PF00563 EAL domain AVFI_02575 PF02036 SCP-2 sterol transfer family AVFI_02580 PF13508 Acetyltransferase (GNAT) domain AVFI_02595 PF00583 Acetyltransferase (GNAT) family AVFI_02600 PF16658 Class II release factor RF3, C-terminal domain AVFI_02600 PF03144 Elongation factor Tu domain 2 AVFI_02600 PF00009 Elongation factor Tu GTP binding domain AVFI_02610 PF01026 TatD related DNase AVFI_02615 PF01773 Na+ dependent nucleoside transporter N-terminus AVFI_02615 PF07662 Na+ dependent nucleoside transporter C-terminus AVFI_02615 PF07670 Nucleoside recognition AVFI_02625 PF01791 DeoC/LacD family aldolase AVFI_02630 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AVFI_02630 PF00591 Glycosyl transferase family, a/b domain AVFI_02630 PF02885 Glycosyl transferase family, helical bundle domain AVFI_02635 PF01676 Metalloenzyme superfamily AVFI_02640 PF01048 Phosphorylase superfamily AVFI_02650 PF18429 Domain of unknown function (DUF5609) AVFI_02660 PF18073 Rubredoxin metal binding domain AVFI_02665 PF03144 Elongation factor Tu domain 2 AVFI_02665 PF00009 Elongation factor Tu GTP binding domain AVFI_02665 PF03764 Elongation factor G, domain IV AVFI_02665 PF14492 Elongation Factor G, domain II AVFI_02665 PF00679 Elongation factor G C-terminus AVFI_02670 PF09905 DNA-binding protein VF530 AVFI_02675 PF07969 Amidohydrolase family AVFI_02680 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AVFI_02685 PF00501 AMP-binding enzyme AVFI_02690 PF01609 Transposase DDE domain AVFI_02690 PF13006 Insertion element 4 transposase N-terminal AVFI_02695 PF05190 MutS family domain IV AVFI_02695 PF05192 MutS domain III AVFI_02695 PF00488 MutS domain V AVFI_02695 PF01624 MutS domain I AVFI_02695 PF05188 MutS domain II AVFI_02700 PF02464 Competence-damaged protein AVFI_02705 PF00154 recA bacterial DNA recombination protein AVFI_02710 PF02272 DHHA1 domain AVFI_02710 PF01411 tRNA synthetases class II (A) AVFI_02710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AVFI_02715 PF00696 Amino acid kinase family AVFI_02715 PF01842 ACT domain AVFI_02715 PF13840 ACT domain AVFI_02720 PF02599 Global regulator protein family AVFI_02765 PF04277 Oxaloacetate decarboxylase, gamma chain AVFI_02770 PF00364 Biotin-requiring enzyme AVFI_02770 PF00682 HMGL-like AVFI_02770 PF02436 Conserved carboxylase domain AVFI_02775 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AVFI_02780 PF09335 SNARE associated Golgi protein AVFI_02785 PF05193 Peptidase M16 inactive domain AVFI_02785 PF00675 Insulinase (Peptidase family M16) AVFI_02790 PF04262 Glutamate-cysteine ligase AVFI_02800 PF02664 S-Ribosylhomocysteinase (LuxS) AVFI_02805 PF01595 Cyclin M transmembrane N-terminal domain AVFI_02805 PF03471 Transporter associated domain AVFI_02805 PF00571 CBS domain AVFI_02810 PF01578 Cytochrome C assembly protein AVFI_02815 PF02881 SRP54-type protein, helical bundle domain AVFI_02815 PF02978 Signal peptide binding domain AVFI_02815 PF00448 SRP54-type protein, GTPase domain AVFI_02820 PF00886 Ribosomal protein S16 AVFI_02825 PF05239 PRC-barrel domain AVFI_02825 PF01782 RimM N-terminal domain AVFI_02830 PF01746 tRNA (Guanine-1)-methyltransferase AVFI_02835 PF01245 Ribosomal protein L19 AVFI_02840 PF00793 DAHP synthetase I family AVFI_02845 PF01817 Chorismate mutase type II AVFI_02845 PF02153 Prephenate dehydrogenase AVFI_02850 PF04225 Opacity-associated protein A LysM-like domain AVFI_02850 PF01551 Peptidase family M23 AVFI_02855 PF07238 PilZ domain AVFI_02860 PF12848 ABC transporter AVFI_02860 PF00005 ABC transporter AVFI_02865 PF01464 Transglycosylase SLT domain AVFI_02865 PF14718 Soluble lytic murein transglycosylase L domain AVFI_02870 PF01371 Trp repressor protein AVFI_02875 PF01931 Protein of unknown function DUF84 AVFI_02880 PF01817 Chorismate mutase type II AVFI_02880 PF00800 Prephenate dehydratase AVFI_02885 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AVFI_02890 PF13525 Outer membrane lipoprotein AVFI_02895 PF00849 RNA pseudouridylate synthase AVFI_02895 PF01479 S4 domain AVFI_02900 PF02578 Multi-copper polyphenol oxidoreductase laccase AVFI_02905 PF17871 AAA lid domain AVFI_02905 PF07724 AAA domain (Cdc48 subfamily) AVFI_02905 PF00004 ATPase family associated with various cellular activities (AAA) AVFI_02905 PF10431 C-terminal, D2-small domain, of ClpB protein AVFI_02905 PF02861 Clp amino terminal domain, pathogenicity island component AVFI_02970 PF02417 Chromate transporter AVFI_02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_02975 PF03466 LysR substrate binding domain AVFI_02985 PF14602 Hexapeptide repeat of succinyl-transferase AVFI_02985 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AVFI_02990 PF07130 YebG protein AVFI_03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_03000 PF03466 LysR substrate binding domain AVFI_03010 PF17946 RecC C-terminal domain AVFI_03015 PF12705 PD-(D/E)XK nuclease superfamily AVFI_03015 PF00580 UvrD/REP helicase N-terminal domain AVFI_03015 PF13361 UvrD-like helicase C-terminal domain AVFI_03020 PF13538 UvrD-like helicase C-terminal domain AVFI_03025 PF00893 Small Multidrug Resistance protein AVFI_03030 PF00696 Amino acid kinase family AVFI_03030 PF00583 Acetyltransferase (GNAT) family AVFI_03040 PF03562 MltA specific insert domain AVFI_03040 PF06725 3D domain AVFI_03045 PF00899 ThiF family AVFI_03050 PF02657 Fe-S metabolism associated domain AVFI_03055 PF00266 Aminotransferase class-V AVFI_03060 PF03466 LysR substrate binding domain AVFI_03060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_03065 PF04241 Protein of unknown function (DUF423) AVFI_03070 PF18125 RlmM ferredoxin-like domain AVFI_03070 PF01728 FtsJ-like methyltransferase AVFI_03075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AVFI_03075 PF01367 5'-3' exonuclease, C-terminal SAM fold AVFI_03080 PF03641 Possible lysine decarboxylase AVFI_03080 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AVFI_03080 PF11892 Domain of unknown function (DUF3412) AVFI_03085 PF00990 Diguanylate cyclase, GGDEF domain AVFI_03095 PF14489 QueF-like protein AVFI_03095 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AVFI_03100 PF07348 Syd protein (SUKH-2) AVFI_03105 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AVFI_03110 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AVFI_03120 PF02378 Phosphotransferase system, EIIC AVFI_03125 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AVFI_03130 PF00232 Glycosyl hydrolase family 1 AVFI_03135 PF00480 ROK family AVFI_03140 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AVFI_03145 PF00356 Bacterial regulatory proteins, lacI family AVFI_03165 PF04287 tRNA pseudouridine synthase C AVFI_03170 PF00849 RNA pseudouridylate synthase AVFI_03180 PF00459 Inositol monophosphatase family AVFI_03185 PF00588 SpoU rRNA Methylase family AVFI_03190 PF02082 Transcriptional regulator AVFI_03195 PF00266 Aminotransferase class-V AVFI_03200 PF01592 NifU-like N terminal domain AVFI_03205 PF01521 Iron-sulphur cluster biosynthesis AVFI_03210 PF07743 HSCB C-terminal oligomerisation domain AVFI_03215 PF00012 Hsp70 protein AVFI_03220 PF00111 2Fe-2S iron-sulfur cluster binding domain AVFI_03225 PF04384 Iron-sulphur cluster assembly AVFI_03230 PF00883 Cytosol aminopeptidase family, catalytic domain AVFI_03230 PF12404 Peptidase AVFI_03235 PF00334 Nucleoside diphosphate kinase AVFI_03240 PF04055 Radical SAM superfamily AVFI_03250 PF13464 Domain of unknown function (DUF4115) AVFI_03255 PF04551 GcpE protein AVFI_03260 PF03129 Anticodon binding domain AVFI_03260 PF13393 Histidyl-tRNA synthetase AVFI_03265 PF09976 Tetratricopeptide repeat-like domain AVFI_03270 PF13360 PQQ-like domain AVFI_03275 PF01926 50S ribosome-binding GTPase AVFI_03275 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AVFI_03290 PF02601 Exonuclease VII, large subunit AVFI_03290 PF13742 OB-fold nucleic acid binding domain AVFI_03295 PF00571 CBS domain AVFI_03295 PF00478 IMP dehydrogenase / GMP reductase domain AVFI_03300 PF02540 NAD synthase AVFI_03300 PF00958 GMP synthase C terminal domain AVFI_03300 PF00117 Glutamine amidotransferase class-I AVFI_03305 PF03806 AbgT putative transporter family AVFI_03310 PF13309 HTH domain AVFI_03310 PF08348 YheO-like PAS domain AVFI_03315 PF03313 Serine dehydratase alpha chain AVFI_03320 PF01042 Endoribonuclease L-PSP AVFI_03335 PF00756 Putative esterase AVFI_03340 PF08240 Alcohol dehydrogenase GroES-like domain AVFI_03340 PF00107 Zinc-binding dehydrogenase AVFI_03345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_03345 PF03466 LysR substrate binding domain AVFI_03350 PF14437 MafB19-like deaminase AVFI_03380 PF06786 Uncharacterised protein family (UPF0253) AVFI_03385 PF00701 Dihydrodipicolinate synthetase family AVFI_03390 PF01418 Helix-turn-helix domain, rpiR family AVFI_03390 PF01380 SIS domain AVFI_03395 PF01979 Amidohydrolase family AVFI_03400 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AVFI_03405 PF00480 ROK family AVFI_03410 PF00474 Sodium:solute symporter family AVFI_03415 PF04074 YhcH/YjgK/YiaL AVFI_03420 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVFI_03425 PF01730 UreF AVFI_03430 PF05194 UreE urease accessory protein, C-terminal domain AVFI_03430 PF02814 UreE urease accessory protein, N-terminal domain AVFI_03435 PF01979 Amidohydrolase family AVFI_03435 PF00449 Urease alpha-subunit, N-terminal domain AVFI_03440 PF00699 Urease beta subunit AVFI_03445 PF00547 Urease, gamma subunit AVFI_03450 PF01774 UreD urease accessory protein AVFI_03455 PF00005 ABC transporter AVFI_03460 PF00005 ABC transporter AVFI_03460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVFI_03465 PF12911 N-terminal TM domain of oligopeptide transport permease C AVFI_03465 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_03470 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_03475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVFI_03480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVFI_03480 PF04073 Aminoacyl-tRNA editing domain AVFI_03480 PF03129 Anticodon binding domain AVFI_03485 PF01980 tRNA-methyltransferase O AVFI_03485 PF18389 TrmO C-terminal domain AVFI_03490 PF03180 NLPA lipoprotein AVFI_03495 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_03500 PF00005 ABC transporter AVFI_03500 PF09383 NIL domain AVFI_03515 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_03520 PF12911 N-terminal TM domain of oligopeptide transport permease C AVFI_03520 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_03525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVFI_03530 PF00005 ABC transporter AVFI_03530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVFI_03535 PF00005 ABC transporter AVFI_03535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVFI_03550 PF00464 Serine hydroxymethyltransferase AVFI_03560 PF17291 N-terminal domain of M60-like peptidases AVFI_03560 PF13402 Peptidase M60, enhancin and enhancin-like AVFI_03560 PF13322 Domain of unknown function (DUF4092) AVFI_03570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_03570 PF00672 HAMP domain AVFI_03570 PF12729 Four helix bundle sensory module for signal transduction AVFI_03575 PF03477 ATP cone domain AVFI_03580 PF01872 RibD C-terminal domain AVFI_03580 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVFI_03585 PF00677 Lumazine binding domain AVFI_03590 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AVFI_03590 PF00925 GTP cyclohydrolase II AVFI_03595 PF00885 6,7-dimethyl-8-ribityllumazine synthase AVFI_03600 PF01029 NusB family AVFI_03605 PF00586 AIR synthase related protein, N-terminal domain AVFI_03605 PF02769 AIR synthase related protein, C-terminal domain AVFI_03610 PF04608 Phosphatidylglycerophosphatase A AVFI_03615 PF13407 Periplasmic binding protein domain AVFI_03620 PF00512 His Kinase A (phospho-acceptor) domain AVFI_03620 PF09308 LuxQ, periplasmic AVFI_03620 PF00072 Response regulator receiver domain AVFI_03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_03635 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AVFI_03635 PF02779 Transketolase, pyrimidine binding domain AVFI_03635 PF02780 Transketolase, C-terminal domain AVFI_03640 PF00348 Polyprenyl synthetase AVFI_03645 PF02609 Exonuclease VII small subunit AVFI_03650 PF01618 MotA/TolQ/ExbB proton channel family AVFI_03655 PF13677 Membrane MotB of proton-channel complex MotA/MotB AVFI_03655 PF00691 OmpA family AVFI_03655 PF13677 Membrane MotB of proton-channel complex MotA/MotB AVFI_03655 PF00691 OmpA family AVFI_03660 PF02568 Thiamine biosynthesis protein (ThiI) AVFI_03660 PF02926 THUMP domain AVFI_03665 PF01965 DJ-1/PfpI family AVFI_03670 PF02558 Ketopantoate reductase PanE/ApbA AVFI_03670 PF08546 Ketopantoate reductase PanE/ApbA C terminal AVFI_03675 PF03502 Nucleoside-specific channel-forming protein, Tsx AVFI_03680 PF07690 Major Facilitator Superfamily AVFI_03685 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVFI_03695 PF05175 Methyltransferase small domain AVFI_03700 PF01722 BolA-like protein AVFI_03705 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AVFI_03705 PF11973 NQRA C-terminal domain AVFI_03710 PF03116 NQR2, RnfD, RnfE family AVFI_03715 PF04205 FMN-binding domain AVFI_03720 PF02508 Rnf-Nqr subunit, membrane protein AVFI_03725 PF02508 Rnf-Nqr subunit, membrane protein AVFI_03730 PF00970 Oxidoreductase FAD-binding domain AVFI_03730 PF00111 2Fe-2S iron-sulfur cluster binding domain AVFI_03730 PF00175 Oxidoreductase NAD-binding domain AVFI_03735 PF02424 ApbE family AVFI_03745 PF00817 impB/mucB/samB family AVFI_03745 PF11799 impB/mucB/samB family C-terminal domain AVFI_03750 PF01168 Alanine racemase, N-terminal domain AVFI_03750 PF00842 Alanine racemase, C-terminal domain AVFI_03755 PF07687 Peptidase dimerisation domain AVFI_03755 PF01546 Peptidase family M20/M25/M40 AVFI_03760 PF00860 Permease family AVFI_03765 PF00156 Phosphoribosyl transferase domain AVFI_03770 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) AVFI_03775 PF00696 Amino acid kinase family AVFI_03775 PF01472 PUA domain AVFI_03780 PF00171 Aldehyde dehydrogenase family AVFI_03790 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AVFI_03790 PF04055 Radical SAM superfamily AVFI_03795 PF03099 Biotin/lipoate A/B protein ligase family AVFI_03800 PF04359 Protein of unknown function (DUF493) AVFI_03805 PF07943 Penicillin-binding protein 5, C-terminal domain AVFI_03805 PF00768 D-alanyl-D-alanine carboxypeptidase AVFI_03810 PF03330 Lytic transglycolase AVFI_03810 PF05036 Sporulation related domain AVFI_03815 PF01098 Cell cycle protein AVFI_03820 PF03717 Penicillin-binding Protein dimerisation domain AVFI_03820 PF00905 Penicillin binding protein transpeptidase domain AVFI_03825 PF02590 Predicted SPOUT methyltransferase AVFI_03835 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AVFI_03835 PF06144 DNA polymerase III, delta subunit AVFI_03840 PF04390 Lipopolysaccharide-assembly AVFI_03845 PF13603 Leucyl-tRNA synthetase, Domain 2 AVFI_03845 PF00133 tRNA synthetases class I (I, L, M and V) AVFI_03845 PF08264 Anticodon-binding domain of tRNA AVFI_03850 PF07295 Zinc-ribbon containing domain AVFI_03855 PF00795 Carbon-nitrogen hydrolase AVFI_03860 PF00571 CBS domain AVFI_03860 PF03471 Transporter associated domain AVFI_03865 PF02130 Uncharacterized protein family UPF0054 AVFI_03870 PF02562 PhoH-like protein AVFI_03875 PF01938 TRAM domain AVFI_03875 PF04055 Radical SAM superfamily AVFI_03875 PF00919 Uncharacterized protein family UPF0004 AVFI_03880 PF01494 FAD binding domain AVFI_03975 PF06071 Protein of unknown function (DUF933) AVFI_03975 PF01926 50S ribosome-binding GTPase AVFI_03980 PF01195 Peptidyl-tRNA hydrolase AVFI_03985 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AVFI_03985 PF14572 Phosphoribosyl synthetase-associated domain AVFI_03990 PF08544 GHMP kinases C terminal AVFI_03990 PF00288 GHMP kinases N terminal domain AVFI_03995 PF03550 Outer membrane lipoprotein LolB AVFI_04000 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AVFI_04000 PF01488 Shikimate / quinate 5-dehydrogenase AVFI_04000 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AVFI_04005 PF03462 PCRF domain AVFI_04005 PF00472 RF-1 domain AVFI_04010 PF13847 Methyltransferase domain AVFI_04010 PF17827 PrmC N-terminal domain AVFI_04020 PF13369 Transglutaminase-like superfamily AVFI_04025 PF00793 DAHP synthetase I family AVFI_04030 PF10414 Sirohaem synthase dimerisation region AVFI_04030 PF14824 Sirohaem biosynthesis protein central AVFI_04030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVFI_04040 PF13806 Rieske-like [2Fe-2S] domain AVFI_04045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AVFI_04045 PF18267 Rubredoxin NAD+ reductase C-terminal domain AVFI_04045 PF04324 BFD-like [2Fe-2S] binding domain AVFI_04045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVFI_04045 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_04050 PF00672 HAMP domain AVFI_04050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_04055 PF00149 Calcineurin-like phosphoesterase AVFI_04055 PF02872 5'-nucleotidase, C-terminal domain AVFI_04060 PF01713 Smr domain AVFI_04080 PF00403 Heavy-metal-associated domain AVFI_04085 PF13411 MerR HTH family regulatory protein AVFI_04090 PF00085 Thioredoxin AVFI_04095 PF00106 short chain dehydrogenase AVFI_04100 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AVFI_04105 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_04110 PF00571 CBS domain AVFI_04110 PF00005 ABC transporter AVFI_04115 PF08338 Domain of unknown function (DUF1731) AVFI_04115 PF01370 NAD dependent epimerase/dehydratase family AVFI_04120 PF12850 Calcineurin-like phosphoesterase superfamily domain AVFI_04125 PF17323 Trans-membrane regulatory protein ToxS AVFI_04130 PF00486 Transcriptional regulatory protein, C terminal AVFI_04135 PF00183 Hsp90 protein AVFI_04140 PF05191 Adenylate kinase, active site lid AVFI_04145 PF00762 Ferrochelatase AVFI_04150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVFI_04150 PF05698 Bacterial trigger factor protein (TF) C-terminus AVFI_04150 PF05697 Bacterial trigger factor protein (TF) AVFI_04155 PF00574 Clp protease AVFI_04160 PF10431 C-terminal, D2-small domain, of ClpB protein AVFI_04160 PF06689 ClpX C4-type zinc finger AVFI_04160 PF07724 AAA domain (Cdc48 subfamily) AVFI_04165 PF02190 ATP-dependent protease La (LON) substrate-binding domain AVFI_04165 PF05362 Lon protease (S16) C-terminal proteolytic domain AVFI_04165 PF00004 ATPase family associated with various cellular activities (AAA) AVFI_04170 PF00216 Bacterial DNA-binding protein AVFI_04175 PF13145 PPIC-type PPIASE domain AVFI_04180 PF10531 SLBB domain AVFI_04185 PF01609 Transposase DDE domain AVFI_04185 PF13006 Insertion element 4 transposase N-terminal AVFI_04190 PF00854 POT family AVFI_04195 PF02357 Transcription termination factor nusG AVFI_04200 PF13537 Glutamine amidotransferase domain AVFI_04200 PF00733 Asparagine synthase AVFI_04205 PF00999 Sodium/hydrogen exchanger family AVFI_04205 PF02254 TrkA-N domain AVFI_04210 PF01047 MarR family AVFI_04210 PF00480 ROK family AVFI_04215 PF01979 Amidohydrolase family AVFI_04220 PF02378 Phosphotransferase system, EIIC AVFI_04220 PF00367 phosphotransferase system, EIIB AVFI_04220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AVFI_04225 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AVFI_04225 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVFI_04230 PF01475 Ferric uptake regulator family AVFI_04240 PF00258 Flavodoxin AVFI_04250 PF00561 alpha/beta hydrolase fold AVFI_04255 PF03925 SeqA protein C-terminal domain AVFI_04255 PF17206 SeqA protein N-terminal domain AVFI_04260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVFI_04260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVFI_04260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVFI_04260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVFI_04265 PF01784 NIF3 (NGG1p interacting factor 3) AVFI_04270 PF00285 Citrate synthase, C-terminal domain AVFI_04275 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AVFI_04280 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AVFI_04285 PF00890 FAD binding domain AVFI_04285 PF02910 Fumarate reductase flavoprotein C-term AVFI_04290 PF13085 2Fe-2S iron-sulfur cluster binding domain AVFI_04295 PF16078 2-oxoglutarate dehydrogenase N-terminus AVFI_04295 PF00676 Dehydrogenase E1 component AVFI_04295 PF16870 2-oxoglutarate dehydrogenase C-terminal AVFI_04295 PF02779 Transketolase, pyrimidine binding domain AVFI_04300 PF02817 e3 binding domain AVFI_04300 PF00364 Biotin-requiring enzyme AVFI_04300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVFI_04305 PF08442 ATP-grasp domain AVFI_04305 PF00549 CoA-ligase AVFI_04310 PF00549 CoA-ligase AVFI_04310 PF02629 CoA binding domain AVFI_04315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_04315 PF00672 HAMP domain AVFI_04315 PF17200 Single Cache domain 2 AVFI_04320 PF00950 ABC 3 transport family AVFI_04325 PF00005 ABC transporter AVFI_04330 PF01297 Zinc-uptake complex component A periplasmic AVFI_04335 PF01551 Peptidase family M23 AVFI_04335 PF01476 LysM domain AVFI_04335 PF08525 Opacity-associated protein A N-terminal motif AVFI_04350 PF07664 Ferrous iron transport protein B C terminus AVFI_04350 PF07670 Nucleoside recognition AVFI_04350 PF02421 Ferrous iron transport protein B AVFI_04360 PF07085 DRTGG domain AVFI_04360 PF01515 Phosphate acetyl/butaryl transferase AVFI_04365 PF00871 Acetokinase family AVFI_04370 PF04217 Protein of unknown function, DUF412 AVFI_04375 PF03485 Arginyl tRNA synthetase N terminal domain AVFI_04375 PF05746 DALR anticodon binding domain AVFI_04375 PF00750 tRNA synthetases class I (R) AVFI_04380 PF06185 YecM protein AVFI_04385 PF04820 Tryptophan halogenase AVFI_04410 PF00550 Phosphopantetheine attachment site AVFI_04415 PF00550 Phosphopantetheine attachment site AVFI_04425 PF00501 AMP-binding enzyme AVFI_04425 PF13193 AMP-binding enzyme C-terminal domain AVFI_04430 PF07977 FabA-like domain AVFI_04435 PF00535 Glycosyl transferase family 2 AVFI_04440 PF00221 Aromatic amino acid lyase AVFI_04465 PF02801 Beta-ketoacyl synthase, C-terminal domain AVFI_04465 PF00109 Beta-ketoacyl synthase, N-terminal domain AVFI_04480 PF00109 Beta-ketoacyl synthase, N-terminal domain AVFI_04480 PF02801 Beta-ketoacyl synthase, C-terminal domain AVFI_04490 PF01386 Ribosomal L25p family AVFI_04500 PF00271 Helicase conserved C-terminal domain AVFI_04500 PF04851 Type III restriction enzyme, res subunit AVFI_04505 PF13091 PLD-like domain AVFI_04550 PF02355 Protein export membrane protein AVFI_04550 PF07549 SecD/SecF GG Motif AVFI_04555 PF07549 SecD/SecF GG Motif AVFI_04555 PF02355 Protein export membrane protein AVFI_04555 PF13721 SecD export protein N-terminal TM region AVFI_04565 PF03466 LysR substrate binding domain AVFI_04565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_04570 PF13533 Biotin-lipoyl like AVFI_04575 PF07690 Major Facilitator Superfamily AVFI_04580 PF00849 RNA pseudouridylate synthase AVFI_04580 PF01479 S4 domain AVFI_04585 PF07690 Major Facilitator Superfamily AVFI_04595 PF11066 Protein of unknown function (DUF2867) AVFI_04595 PF13460 NAD(P)H-binding AVFI_04600 PF00005 ABC transporter AVFI_04615 PF06965 Na+/H+ antiporter 1 AVFI_04620 PF07055 Enoyl reductase FAD binding domain AVFI_04620 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AVFI_04620 PF12241 Trans-2-enoyl-CoA reductase catalytic region AVFI_04625 PF06826 Predicted Permease Membrane Region AVFI_04625 PF02080 TrkA-C domain AVFI_04630 PF00462 Glutaredoxin AVFI_04635 PF01380 SIS domain AVFI_04635 PF01418 Helix-turn-helix domain, rpiR family AVFI_04640 PF00282 Pyridoxal-dependent decarboxylase conserved domain AVFI_04650 PF03956 Lysine exporter LysO AVFI_04660 PF04994 TfoX C-terminal domain AVFI_04660 PF04993 TfoX N-terminal domain AVFI_04675 PF00266 Aminotransferase class-V AVFI_04680 PF00664 ABC transporter transmembrane region AVFI_04680 PF00005 ABC transporter AVFI_04685 PF00664 ABC transporter transmembrane region AVFI_04685 PF00005 ABC transporter AVFI_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_04695 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AVFI_04695 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AVFI_04700 PF01037 Lrp/AsnC ligand binding domain AVFI_04705 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AVFI_04705 PF17854 FtsK alpha domain AVFI_04705 PF09397 Ftsk gamma domain AVFI_04705 PF01580 FtsK/SpoIIIE family AVFI_04710 PF03548 Outer membrane lipoprotein carrier protein LolA AVFI_04715 PF16193 AAA C-terminal domain AVFI_04715 PF00004 ATPase family associated with various cellular activities (AAA) AVFI_04715 PF12002 MgsA AAA+ ATPase C terminal AVFI_04720 PF02403 Seryl-tRNA synthetase N-terminal domain AVFI_04720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVFI_04725 PF00085 Thioredoxin AVFI_04730 PF04269 Protein of unknown function, DUF440 AVFI_04735 PF00294 pfkB family carbohydrate kinase AVFI_04740 PF01263 Aldose 1-epimerase AVFI_04745 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVFI_04745 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVFI_04750 PF01641 SelR domain AVFI_04755 PF01609 Transposase DDE domain AVFI_04755 PF13006 Insertion element 4 transposase N-terminal AVFI_04765 PF07023 Protein of unknown function (DUF1315) AVFI_04775 PF00027 Cyclic nucleotide-binding domain AVFI_04775 PF00520 Ion transport protein AVFI_04780 PF00171 Aldehyde dehydrogenase family AVFI_04780 PF00465 Iron-containing alcohol dehydrogenase AVFI_04790 PF01609 Transposase DDE domain AVFI_04790 PF13808 DDE_Tnp_1-associated AVFI_04800 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AVFI_04800 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AVFI_04805 PF00462 Glutaredoxin AVFI_04815 PF03553 Na+/H+ antiporter family AVFI_04815 PF13726 Na+-H+ antiporter family AVFI_04820 PF00929 Exonuclease AVFI_04825 PF18393 MotY N-terminal domain AVFI_04825 PF00691 OmpA family AVFI_04830 PF10952 Protein of unknown function (DUF2753) AVFI_04835 PF13006 Insertion element 4 transposase N-terminal AVFI_04835 PF01609 Transposase DDE domain AVFI_04840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVFI_04845 PF10576 Iron-sulfur binding domain of endonuclease III AVFI_04845 PF00633 Helix-hairpin-helix motif AVFI_04845 PF00730 HhH-GPD superfamily base excision DNA repair protein AVFI_04850 PF02508 Rnf-Nqr subunit, membrane protein AVFI_04855 PF04205 FMN-binding domain AVFI_04860 PF03116 NQR2, RnfD, RnfE family AVFI_04865 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AVFI_04865 PF12838 4Fe-4S dicluster domain AVFI_04865 PF13375 RnfC Barrel sandwich hybrid domain AVFI_04865 PF10531 SLBB domain AVFI_04870 PF04060 Putative Fe-S cluster AVFI_04875 PF02508 Rnf-Nqr subunit, membrane protein AVFI_04880 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AVFI_04880 PF01610 Transposase AVFI_04880 PF13542 Helix-turn-helix domain of transposase family ISL3 AVFI_04895 PF00271 Helicase conserved C-terminal domain AVFI_04895 PF04851 Type III restriction enzyme, res subunit AVFI_04895 PF02151 UvrB/uvrC motif AVFI_04895 PF12344 Ultra-violet resistance protein B AVFI_04895 PF17757 UvrB interaction domain AVFI_04900 PF02954 Bacterial regulatory protein, Fis family AVFI_04900 PF00072 Response regulator receiver domain AVFI_04900 PF00158 Sigma-54 interaction domain AVFI_04905 PF01627 Hpt domain AVFI_04910 PF01933 Uncharacterised protein family UPF0052 AVFI_04915 PF04055 Radical SAM superfamily AVFI_04915 PF06463 Molybdenum Cofactor Synthesis C AVFI_04920 PF01967 MoaC family AVFI_04925 PF02597 ThiS family AVFI_04930 PF02391 MoaE protein AVFI_04945 PF08443 RimK-like ATP-grasp domain AVFI_04945 PF18030 RimK PreATP-grasp domain AVFI_04950 PF08003 Protein of unknown function (DUF1698) AVFI_04955 PF13649 Methyltransferase domain AVFI_04960 PF01336 OB-fold nucleic acid binding domain AVFI_04960 PF02938 GAD domain AVFI_04960 PF00152 tRNA synthetases class II (D, K and N) AVFI_04965 PF02075 Crossover junction endodeoxyribonuclease RuvC AVFI_04970 PF07499 RuvA, C-terminal domain AVFI_04970 PF01330 RuvA N terminal domain AVFI_04975 PF05496 Holliday junction DNA helicase RuvB P-loop domain AVFI_04975 PF17864 RuvB AAA lid domain AVFI_04975 PF05491 RuvB C-terminal winged helix domain AVFI_04980 PF01654 Cytochrome bd terminal oxidase subunit I AVFI_04985 PF02322 Cytochrome bd terminal oxidase subunit II AVFI_04990 PF08173 Membrane bound YbgT-like protein AVFI_05000 PF03061 Thioesterase superfamily AVFI_05005 PF01618 MotA/TolQ/ExbB proton channel family AVFI_05010 PF02472 Biopolymer transport protein ExbD/TolR AVFI_05020 PF07676 WD40-like Beta Propeller Repeat AVFI_05020 PF04052 TolB amino-terminal domain AVFI_05025 PF00691 OmpA family AVFI_05030 PF16331 TolA binding protein trimerisation AVFI_05030 PF13174 Tetratricopeptide repeat AVFI_05035 PF02445 Quinolinate synthetase A protein AVFI_05045 PF06610 L-alanine exporter AVFI_05070 PF02384 N-6 DNA Methylase AVFI_05085 PF16360 GTP-binding GTPase Middle Region AVFI_05085 PF13167 GTP-binding GTPase N-terminal AVFI_05085 PF01926 50S ribosome-binding GTPase AVFI_05110 PF07690 Major Facilitator Superfamily AVFI_05120 PF00892 EamA-like transporter family AVFI_05135 PF00563 EAL domain AVFI_05135 PF00990 Diguanylate cyclase, GGDEF domain AVFI_05135 PF03707 Bacterial signalling protein N terminal repeat AVFI_05140 PF06483 Chitinase C AVFI_05140 PF00704 Glycosyl hydrolases family 18 AVFI_05145 PF12729 Four helix bundle sensory module for signal transduction AVFI_05145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_05145 PF00672 HAMP domain AVFI_05160 PF00990 Diguanylate cyclase, GGDEF domain AVFI_05165 PF00069 Protein kinase domain AVFI_05165 PF03793 PASTA domain AVFI_05175 PF06744 Type VI secretion protein IcmF C-terminal AVFI_05175 PF06761 Intracellular multiplication and human macrophage-killing AVFI_05175 PF14331 ImcF-related N-terminal domain AVFI_05185 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AVFI_05200 PF02954 Bacterial regulatory protein, Fis family AVFI_05200 PF00158 Sigma-54 interaction domain AVFI_05205 PF17871 AAA lid domain AVFI_05205 PF10431 C-terminal, D2-small domain, of ClpB protein AVFI_05205 PF00004 ATPase family associated with various cellular activities (AAA) AVFI_05205 PF07724 AAA domain (Cdc48 subfamily) AVFI_05225 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AVFI_05240 PF10689 Protein of unknown function (DUF2496) AVFI_05245 PF07445 Primosomal replication protein priC AVFI_05250 PF01925 Sulfite exporter TauE/SafE AVFI_05255 PF06733 DEAD_2 AVFI_05255 PF13307 Helicase C-terminal domain AVFI_05260 PF13609 Gram-negative porin AVFI_05265 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AVFI_05275 PF01634 ATP phosphoribosyltransferase AVFI_05275 PF08029 HisG, C-terminal domain AVFI_05280 PF00815 Histidinol dehydrogenase AVFI_05285 PF00155 Aminotransferase class I and II AVFI_05290 PF00475 Imidazoleglycerol-phosphate dehydratase AVFI_05290 PF08645 Polynucleotide kinase 3 phosphatase AVFI_05295 PF00117 Glutamine amidotransferase class-I AVFI_05300 PF00977 Histidine biosynthesis protein AVFI_05305 PF00977 Histidine biosynthesis protein AVFI_05310 PF01502 Phosphoribosyl-AMP cyclohydrolase AVFI_05310 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AVFI_05315 PF00849 RNA pseudouridylate synthase AVFI_05320 PF10672 S-adenosylmethionine-dependent methyltransferase AVFI_05320 PF02926 THUMP domain AVFI_05320 PF01170 Putative RNA methylase family UPF0020 AVFI_05330 PF03795 YCII-related domain AVFI_05335 PF03061 Thioesterase superfamily AVFI_05340 PF04279 Intracellular septation protein A AVFI_05345 PF00375 Sodium:dicarboxylate symporter family AVFI_05350 PF00290 Tryptophan synthase alpha chain AVFI_05355 PF00291 Pyridoxal-phosphate dependent enzyme AVFI_05360 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AVFI_05360 PF00218 Indole-3-glycerol phosphate synthase AVFI_05365 PF02885 Glycosyl transferase family, helical bundle domain AVFI_05365 PF00591 Glycosyl transferase family, a/b domain AVFI_05370 PF00117 Glutamine amidotransferase class-I AVFI_05375 PF04715 Anthranilate synthase component I, N terminal region AVFI_05375 PF00425 chorismate binding enzyme AVFI_05380 PF02811 PHP domain AVFI_05385 PF01300 Telomere recombination AVFI_05390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_05390 PF00072 Response regulator receiver domain AVFI_05400 PF01479 S4 domain AVFI_05400 PF00849 RNA pseudouridylate synthase AVFI_05405 PF00106 short chain dehydrogenase AVFI_05410 PF01343 Peptidase family S49 AVFI_05410 PF08496 Peptidase family S49 N-terminal AVFI_05415 PF10692 Protein of unknown function (DUF2498) AVFI_05420 PF08272 Topoisomerase I zinc-ribbon-like AVFI_05420 PF01131 DNA topoisomerase AVFI_05420 PF01751 Toprim domain AVFI_05420 PF01396 Topoisomerase DNA binding C4 zinc finger AVFI_05425 PF00939 Sodium:sulfate symporter transmembrane region AVFI_05430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_05430 PF00512 His Kinase A (phospho-acceptor) domain AVFI_05430 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVFI_05435 PF00072 Response regulator receiver domain AVFI_05435 PF00158 Sigma-54 interaction domain AVFI_05435 PF02954 Bacterial regulatory protein, Fis family AVFI_05440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVFI_05440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVFI_05445 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVFI_05445 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVFI_05445 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVFI_05445 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVFI_05450 PF01810 LysE type translocator AVFI_05455 PF01557 Fumarylacetoacetate (FAA) hydrolase family AVFI_05465 PF07687 Peptidase dimerisation domain AVFI_05465 PF01546 Peptidase family M20/M25/M40 AVFI_05470 PF03606 C4-dicarboxylate anaerobic carrier AVFI_05475 PF00709 Adenylosuccinate synthetase AVFI_05485 PF00282 Pyridoxal-dependent decarboxylase conserved domain AVFI_05490 PF06826 Predicted Permease Membrane Region AVFI_05495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_05495 PF03466 LysR substrate binding domain AVFI_05500 PF07681 DoxX AVFI_05505 PF05726 Pirin C-terminal cupin domain AVFI_05505 PF02678 Pirin AVFI_05525 PF03466 LysR substrate binding domain AVFI_05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_05535 PF12833 Helix-turn-helix domain AVFI_05535 PF02311 AraC-like ligand binding domain AVFI_05550 PF00069 Protein kinase domain AVFI_05550 PF03781 Sulfatase-modifying factor enzyme 1 AVFI_05575 PF00440 Bacterial regulatory proteins, tetR family AVFI_05580 PF02798 Glutathione S-transferase, N-terminal domain AVFI_05580 PF00043 Glutathione S-transferase, C-terminal domain AVFI_05585 PF02798 Glutathione S-transferase, N-terminal domain AVFI_05590 PF05525 Branched-chain amino acid transport protein AVFI_05600 PF00072 Response regulator receiver domain AVFI_05600 PF00486 Transcriptional regulatory protein, C terminal AVFI_05610 PF03605 Anaerobic c4-dicarboxylate membrane transporter AVFI_05625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_05630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_05635 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVFI_05645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_05645 PF03466 LysR substrate binding domain AVFI_05650 PF07662 Na+ dependent nucleoside transporter C-terminus AVFI_05650 PF07670 Nucleoside recognition AVFI_05650 PF01773 Na+ dependent nucleoside transporter N-terminus AVFI_05660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVFI_05675 PF01844 HNH endonuclease AVFI_05685 PF04191 Phospholipid methyltransferase AVFI_05700 PF00005 ABC transporter AVFI_05700 PF02687 FtsX-like permease family AVFI_05700 PF12704 MacB-like periplasmic core domain AVFI_05705 PF00005 ABC transporter AVFI_05710 PF00226 DnaJ domain AVFI_05710 PF01556 DnaJ C terminal domain AVFI_05710 PF00684 DnaJ central domain AVFI_05725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_05725 PF03466 LysR substrate binding domain AVFI_05735 PF01418 Helix-turn-helix domain, rpiR family AVFI_05735 PF01380 SIS domain AVFI_05740 PF13580 SIS domain AVFI_05745 PF00367 phosphotransferase system, EIIB AVFI_05745 PF02378 Phosphotransferase system, EIIC AVFI_05765 PF02028 BCCT, betaine/carnitine/choline family transporter AVFI_05770 PF00326 Prolyl oligopeptidase family AVFI_05770 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AVFI_05775 PF00854 POT family AVFI_05785 PF03515 Colicin-like bacteriocin tRNase domain AVFI_05785 PF09000 Cytotoxic AVFI_05785 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 AVFI_05825 PF00128 Alpha amylase, catalytic domain AVFI_05830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_05830 PF17200 Single Cache domain 2 AVFI_05830 PF00672 HAMP domain AVFI_05835 PF01230 HIT domain AVFI_05850 PF13036 Peptidoglycan-synthase activator LpoB AVFI_05850 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AVFI_05870 PF05728 Uncharacterised protein family (UPF0227) AVFI_05875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_05880 PF00271 Helicase conserved C-terminal domain AVFI_05880 PF00270 DEAD/DEAH box helicase AVFI_05895 PF02554 Carbon starvation protein CstA AVFI_05900 PF04397 LytTr DNA-binding domain AVFI_05900 PF00072 Response regulator receiver domain AVFI_05905 PF06580 Histidine kinase AVFI_05905 PF07694 5TMR of 5TMR-LYT AVFI_05910 PF01184 GPR1/FUN34/yaaH family AVFI_05920 PF01435 Peptidase family M48 AVFI_05935 PF00375 Sodium:dicarboxylate symporter family AVFI_05940 PF01979 Amidohydrolase family AVFI_05945 PF01471 Putative peptidoglycan binding domain AVFI_05945 PF03734 L,D-transpeptidase catalytic domain AVFI_05950 PF05951 Bacterial protein of unknown function (DUF882) AVFI_05955 PF00152 tRNA synthetases class II (D, K and N) AVFI_05955 PF01336 OB-fold nucleic acid binding domain AVFI_05960 PF01242 6-pyruvoyl tetrahydropterin synthase AVFI_05970 PF12320 Type 5 capsule protein repressor C-terminal domain AVFI_05970 PF00149 Calcineurin-like phosphoesterase AVFI_05975 PF13476 AAA domain AVFI_05985 PF01554 MatE AVFI_05990 PF03222 Tryptophan/tyrosine permease family AVFI_05995 PF03222 Tryptophan/tyrosine permease family AVFI_06015 PF03313 Serine dehydratase alpha chain AVFI_06015 PF03315 Serine dehydratase beta chain AVFI_06020 PF03222 Tryptophan/tyrosine permease family AVFI_06025 PF00293 NUDIX domain AVFI_06030 PF04715 Anthranilate synthase component I, N terminal region AVFI_06030 PF00425 chorismate binding enzyme AVFI_06045 PF13533 Biotin-lipoyl like AVFI_06050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_06055 PF00873 AcrB/AcrD/AcrF family AVFI_06075 PF01053 Cys/Met metabolism PLP-dependent enzyme AVFI_06085 PF00465 Iron-containing alcohol dehydrogenase AVFI_06090 PF00925 GTP cyclohydrolase II AVFI_06095 PF13006 Insertion element 4 transposase N-terminal AVFI_06095 PF01609 Transposase DDE domain AVFI_06120 PF00753 Metallo-beta-lactamase superfamily AVFI_06135 PF03222 Tryptophan/tyrosine permease family AVFI_06140 PF00994 Probable molybdopterin binding domain AVFI_06150 PF00990 Diguanylate cyclase, GGDEF domain AVFI_06155 PF00268 Ribonucleotide reductase, small chain AVFI_06160 PF03477 ATP cone domain AVFI_06160 PF02867 Ribonucleotide reductase, barrel domain AVFI_06160 PF00317 Ribonucleotide reductase, all-alpha domain AVFI_06170 PF00521 DNA gyrase/topoisomerase IV, subunit A AVFI_06170 PF03989 DNA gyrase C-terminal domain, beta-propeller AVFI_06195 PF00012 Hsp70 protein AVFI_06200 PF04266 ASCH domain AVFI_06210 PF07070 SpoOM protein AVFI_06220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVFI_06230 PF03129 Anticodon binding domain AVFI_06230 PF02824 TGS domain AVFI_06230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVFI_06230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AVFI_06235 PF00707 Translation initiation factor IF-3, C-terminal domain AVFI_06235 PF05198 Translation initiation factor IF-3, N-terminal domain AVFI_06240 PF01632 Ribosomal protein L35 AVFI_06245 PF00453 Ribosomal protein L20 AVFI_06255 PF00005 ABC transporter AVFI_06260 PF01032 FecCD transport family AVFI_06265 PF01497 Periplasmic binding protein AVFI_06270 PF02472 Biopolymer transport protein ExbD/TolR AVFI_06275 PF01618 MotA/TolQ/ExbB proton channel family AVFI_06280 PF03544 Gram-negative bacterial TonB protein C-terminal AVFI_06285 PF04055 Radical SAM superfamily AVFI_06290 PF06228 Haem utilisation ChuX/HutX AVFI_06295 PF01243 Pyridoxamine 5'-phosphate oxidase AVFI_06300 PF04717 Type VI secretion system, phage-baseplate injector AVFI_06305 PF13503 Domain of unknown function (DUF4123) AVFI_06335 PF00593 TonB dependent receptor AVFI_06335 PF07715 TonB-dependent Receptor Plug Domain AVFI_06340 PF01409 tRNA synthetases class II core domain (F) AVFI_06340 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AVFI_06345 PF03484 tRNA synthetase B5 domain AVFI_06345 PF03147 Ferredoxin-fold anticodon binding domain AVFI_06345 PF01588 Putative tRNA binding domain AVFI_06345 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AVFI_06345 PF03483 B3/4 domain AVFI_06350 PF00216 Bacterial DNA-binding protein AVFI_06355 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVFI_06365 PF04461 Protein of unknown function (DUF520) AVFI_06370 PF00793 DAHP synthetase I family AVFI_06375 PF05524 PEP-utilising enzyme, N-terminal AVFI_06375 PF00391 PEP-utilising enzyme, mobile domain AVFI_06375 PF02896 PEP-utilising enzyme, TIM barrel domain AVFI_06390 PF00990 Diguanylate cyclase, GGDEF domain AVFI_06390 PF17158 Membrane-associated sensor, integral membrane domain AVFI_06450 PF07728 AAA domain (dynein-related subfamily) AVFI_06450 PF12102 Domain of unknown function (DUF3578) AVFI_06475 PF00155 Aminotransferase class I and II AVFI_06480 PF03553 Na+/H+ antiporter family AVFI_06485 PF00356 Bacterial regulatory proteins, lacI family AVFI_06490 PF02112 cAMP phosphodiesterases class-II AVFI_06500 PF03061 Thioesterase superfamily AVFI_06510 PF00440 Bacterial regulatory proteins, tetR family AVFI_06515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVFI_06520 PF00462 Glutaredoxin AVFI_06530 PF01979 Amidohydrolase family AVFI_06540 PF01554 MatE AVFI_06545 PF00817 impB/mucB/samB family AVFI_06545 PF13438 Domain of unknown function (DUF4113) AVFI_06545 PF11799 impB/mucB/samB family C-terminal domain AVFI_06550 PF00717 Peptidase S24-like AVFI_06550 PF01726 LexA DNA binding domain AVFI_06555 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVFI_06565 PF01132 Elongation factor P (EF-P) OB domain AVFI_06565 PF08207 Elongation factor P (EF-P) KOW-like domain AVFI_06565 PF09285 Elongation factor P, C-terminal AVFI_06575 PF01189 16S rRNA methyltransferase RsmB/F AVFI_06575 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AVFI_06575 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AVFI_06580 PF02470 MlaD protein AVFI_06585 PF04403 Paraquat-inducible protein A AVFI_06590 PF00005 ABC transporter AVFI_06590 PF00664 ABC transporter transmembrane region AVFI_06595 PF13185 GAF domain AVFI_06600 PF04352 ProQ/FINO family AVFI_06600 PF17516 ProQ C-terminal domain AVFI_06605 PF03572 Peptidase family S41 AVFI_06605 PF17804 Tail specific protease N-terminal domain AVFI_06605 PF11818 C-terminal domain of tail specific protease (DUF3340) AVFI_06605 PF00595 PDZ domain AVFI_06615 PF11940 Domain of unknown function (DUF3458) Ig-like fold AVFI_06615 PF01433 Peptidase family M1 domain AVFI_06615 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AVFI_06625 PF05088 Bacterial NAD-glutamate dehydrogenase AVFI_06630 PF01180 Dihydroorotate dehydrogenase AVFI_06635 PF07126 Cell-division protein ZapC AVFI_06640 PF10672 S-adenosylmethionine-dependent methyltransferase AVFI_06640 PF02926 THUMP domain AVFI_06640 PF01170 Putative RNA methylase family UPF0020 AVFI_06650 PF16326 ABC transporter C-terminal domain AVFI_06650 PF12848 ABC transporter AVFI_06650 PF00005 ABC transporter AVFI_06660 PF04957 Ribosome modulation factor AVFI_06665 PF07977 FabA-like domain AVFI_06670 PF05362 Lon protease (S16) C-terminal proteolytic domain AVFI_06670 PF13654 AAA domain AVFI_06675 PF06303 MatP N-terminal domain AVFI_06675 PF17414 MatP C-terminal ribbon-helix-helix domain AVFI_06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_06700 PF00512 His Kinase A (phospho-acceptor) domain AVFI_06700 PF09308 LuxQ, periplasmic AVFI_06700 PF00072 Response regulator receiver domain AVFI_06715 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVFI_06730 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AVFI_06730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVFI_06740 PF00403 Heavy-metal-associated domain AVFI_06755 PF13545 Crp-like helix-turn-helix domain AVFI_06755 PF00027 Cyclic nucleotide-binding domain AVFI_06760 PF00582 Universal stress protein family AVFI_06765 PF01171 PP-loop family AVFI_06790 PF08402 TOBE domain AVFI_06790 PF00005 ABC transporter AVFI_06795 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_06800 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_06805 PF13416 Bacterial extracellular solute-binding protein AVFI_06810 PF13416 Bacterial extracellular solute-binding protein AVFI_06815 PF02146 Sir2 family AVFI_06820 PF03466 LysR substrate binding domain AVFI_06820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_06825 PF01773 Na+ dependent nucleoside transporter N-terminus AVFI_06825 PF07670 Nucleoside recognition AVFI_06825 PF07662 Na+ dependent nucleoside transporter C-terminus AVFI_06835 PF13599 Pentapeptide repeats (9 copies) AVFI_06845 PF12464 Maltose acetyltransferase AVFI_06845 PF14602 Hexapeptide repeat of succinyl-transferase AVFI_06845 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_06860 PF14718 Soluble lytic murein transglycosylase L domain AVFI_06860 PF01464 Transglycosylase SLT domain AVFI_06870 PF01554 MatE AVFI_06875 PF03466 LysR substrate binding domain AVFI_06875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_06880 PF01966 HD domain AVFI_06890 PF12464 Maltose acetyltransferase AVFI_06890 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_06895 PF01810 LysE type translocator AVFI_06910 PF04794 YdjC-like protein AVFI_06930 PF13673 Acetyltransferase (GNAT) domain AVFI_06935 PF13302 Acetyltransferase (GNAT) domain AVFI_06945 PF08274 PhnA Zinc-Ribbon AVFI_06945 PF03831 PhnA domain AVFI_06955 PF00990 Diguanylate cyclase, GGDEF domain AVFI_06975 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system AVFI_06980 PF13344 Haloacid dehalogenase-like hydrolase AVFI_06980 PF00293 NUDIX domain AVFI_06995 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA AVFI_07000 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system AVFI_07035 PF13247 4Fe-4S dicluster domain AVFI_07040 PF01568 Molydopterin dinucleotide binding domain AVFI_07040 PF00384 Molybdopterin oxidoreductase AVFI_07040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVFI_07070 PF02634 FdhD/NarQ family AVFI_07075 PF11849 Domain of unknown function (DUF3369) AVFI_07080 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AVFI_07080 PF01464 Transglycosylase SLT domain AVFI_07085 PF02743 Cache domain AVFI_07085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_07085 PF00672 HAMP domain AVFI_07090 PF01470 Pyroglutamyl peptidase AVFI_07105 PF01566 Natural resistance-associated macrophage protein AVFI_07110 PF02626 Carboxyltransferase domain, subdomain A and B AVFI_07115 PF02682 Carboxyltransferase domain, subdomain C and D AVFI_07120 PF03746 LamB/YcsF family AVFI_07125 PF07286 Protein of unknown function (DUF1445) AVFI_07130 PF03466 LysR substrate binding domain AVFI_07130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_07150 PF12392 Collagenase AVFI_07150 PF01136 Peptidase family U32 AVFI_07180 PF00581 Rhodanese-like domain AVFI_07195 PF00704 Glycosyl hydrolases family 18 AVFI_07195 PF06483 Chitinase C AVFI_07220 PF02028 BCCT, betaine/carnitine/choline family transporter AVFI_07230 PF00486 Transcriptional regulatory protein, C terminal AVFI_07230 PF00072 Response regulator receiver domain AVFI_07235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_07245 PF00535 Glycosyl transferase family 2 AVFI_07255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_07255 PF00512 His Kinase A (phospho-acceptor) domain AVFI_07255 PF00989 PAS fold AVFI_07260 PF00158 Sigma-54 interaction domain AVFI_07260 PF00072 Response regulator receiver domain AVFI_07260 PF02954 Bacterial regulatory protein, Fis family AVFI_07265 PF12849 PBP superfamily domain AVFI_07270 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_07275 PF08402 TOBE domain AVFI_07275 PF00005 ABC transporter AVFI_07280 PF12804 MobA-like NTP transferase domain AVFI_07285 PF00994 Probable molybdopterin binding domain AVFI_07285 PF03454 MoeA C-terminal region (domain IV) AVFI_07285 PF03453 MoeA N-terminal region (domain I and II) AVFI_07290 PF03781 Sulfatase-modifying factor enzyme 1 AVFI_07300 PF03781 Sulfatase-modifying factor enzyme 1 AVFI_07315 PF04717 Type VI secretion system, phage-baseplate injector AVFI_07320 PF05638 Type VI secretion system effector, Hcp AVFI_07325 PF12161 HsdM N-terminal domain AVFI_07325 PF02384 N-6 DNA Methylase AVFI_07335 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVFI_07335 PF18766 SWI2/SNF2 ATPase AVFI_07335 PF11867 Domain of unknown function (DUF3387) AVFI_07360 PF02810 SEC-C motif AVFI_07360 PF07517 SecA DEAD-like domain AVFI_07360 PF01043 SecA preprotein cross-linking domain AVFI_07360 PF07516 SecA Wing and Scaffold domain AVFI_07365 PF00480 ROK family AVFI_07370 PF03942 DTW domain AVFI_07380 PF03806 AbgT putative transporter family AVFI_07385 PF00877 NlpC/P60 family AVFI_07395 PF03881 Fructosamine kinase AVFI_07405 PF00677 Lumazine binding domain AVFI_07410 PF01554 MatE AVFI_07420 PF04055 Radical SAM superfamily AVFI_07420 PF13186 Iron-sulfur cluster-binding domain AVFI_07425 PF03781 Sulfatase-modifying factor enzyme 1 AVFI_07430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_07430 PF03466 LysR substrate binding domain AVFI_07460 PF07726 ATPase family associated with various cellular activities (AAA) AVFI_07460 PF17863 AAA lid domain AVFI_07470 PF00884 Sulfatase AVFI_07475 PF00884 Sulfatase AVFI_07485 PF00884 Sulfatase AVFI_07500 PF02001 Protein of unknown function DUF134 AVFI_07535 PF00271 Helicase conserved C-terminal domain AVFI_07535 PF00270 DEAD/DEAH box helicase AVFI_07565 PF05025 RbsD / FucU transport protein family AVFI_07570 PF00005 ABC transporter AVFI_07575 PF02653 Branched-chain amino acid transport system / permease component AVFI_07580 PF13407 Periplasmic binding protein domain AVFI_07585 PF00294 pfkB family carbohydrate kinase AVFI_07590 PF00356 Bacterial regulatory proteins, lacI family AVFI_07595 PF01068 ATP dependent DNA ligase domain AVFI_07595 PF14743 DNA ligase OB-like domain AVFI_07605 PF01554 MatE AVFI_07615 PF01235 Sodium:alanine symporter family AVFI_07620 PF00924 Mechanosensitive ion channel AVFI_07620 PF05552 Conserved TM helix AVFI_07625 PF01810 LysE type translocator AVFI_07635 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AVFI_07655 PF13538 UvrD-like helicase C-terminal domain AVFI_07655 PF14490 Helix-hairpin-helix containing domain AVFI_07655 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AVFI_07700 PF00291 Pyridoxal-phosphate dependent enzyme AVFI_07705 PF01042 Endoribonuclease L-PSP AVFI_07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_07710 PF03466 LysR substrate binding domain AVFI_07715 PF01381 Helix-turn-helix AVFI_07720 PF07804 HipA-like C-terminal domain AVFI_07720 PF13657 HipA N-terminal domain AVFI_07730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_07730 PF03466 LysR substrate binding domain AVFI_07745 PF07969 Amidohydrolase family AVFI_07750 PF00684 DnaJ central domain AVFI_07750 PF01556 DnaJ C terminal domain AVFI_07750 PF00226 DnaJ domain AVFI_07760 PF00230 Major intrinsic protein AVFI_07775 PF08411 Exonuclease C-terminal AVFI_07775 PF00929 Exonuclease AVFI_07780 PF03788 LrgA family AVFI_07785 PF04172 LrgB-like family AVFI_07790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVFI_07790 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AVFI_07795 PF01425 Amidase AVFI_07800 PF02222 ATP-grasp domain AVFI_07800 PF01370 NAD dependent epimerase/dehydratase family AVFI_07805 PF00155 Aminotransferase class I and II AVFI_07810 PF01610 Transposase AVFI_07810 PF13542 Helix-turn-helix domain of transposase family ISL3 AVFI_07810 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AVFI_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_07820 PF03466 LysR substrate binding domain AVFI_07830 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AVFI_07850 PF00462 Glutaredoxin AVFI_07860 PF01259 SAICAR synthetase AVFI_07870 PF04408 Helicase associated domain (HA2) AVFI_07870 PF00270 DEAD/DEAH box helicase AVFI_07870 PF11898 Domain of unknown function (DUF3418) AVFI_07870 PF00271 Helicase conserved C-terminal domain AVFI_07870 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AVFI_07875 PF04358 DsrC like protein AVFI_07880 PF00708 Acylphosphatase AVFI_07885 PF17200 Single Cache domain 2 AVFI_07885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_07885 PF00672 HAMP domain AVFI_07890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_07890 PF00672 HAMP domain AVFI_07890 PF12729 Four helix bundle sensory module for signal transduction AVFI_07895 PF17785 PUA-like domain AVFI_07895 PF10672 S-adenosylmethionine-dependent methyltransferase AVFI_07915 PF05724 Thiopurine S-methyltransferase (TPMT) AVFI_07920 PF00375 Sodium:dicarboxylate symporter family AVFI_07930 PF00990 Diguanylate cyclase, GGDEF domain AVFI_07940 PF00012 Hsp70 protein AVFI_07945 PF00012 Hsp70 protein AVFI_07965 PF01048 Phosphorylase superfamily AVFI_07970 PF00403 Heavy-metal-associated domain AVFI_07975 PF00571 CBS domain AVFI_07975 PF00478 IMP dehydrogenase / GMP reductase domain AVFI_07985 PF13183 4Fe-4S dicluster domain AVFI_07985 PF01565 FAD binding domain AVFI_07985 PF02913 FAD linked oxidases, C-terminal domain AVFI_07995 PF17763 Glutaminase/Asparaginase C-terminal domain AVFI_07995 PF00710 Asparaginase, N-terminal AVFI_08010 PF00392 Bacterial regulatory proteins, gntR family AVFI_08010 PF07702 UTRA domain AVFI_08015 PF10414 Sirohaem synthase dimerisation region AVFI_08015 PF14824 Sirohaem biosynthesis protein central AVFI_08015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVFI_08020 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVFI_08025 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_08040 PF07516 SecA Wing and Scaffold domain AVFI_08040 PF02810 SEC-C motif AVFI_08040 PF07517 SecA DEAD-like domain AVFI_08040 PF01043 SecA preprotein cross-linking domain AVFI_08060 PF02384 N-6 DNA Methylase AVFI_08060 PF12161 HsdM N-terminal domain AVFI_08070 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AVFI_08070 PF00271 Helicase conserved C-terminal domain AVFI_08070 PF04851 Type III restriction enzyme, res subunit AVFI_08070 PF08463 EcoEI R protein C-terminal AVFI_08100 PF00005 ABC transporter AVFI_08105 PF01027 Inhibitor of apoptosis-promoting Bax1 AVFI_08140 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AVFI_08145 PF01569 PAP2 superfamily AVFI_08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_08150 PF03466 LysR substrate binding domain AVFI_08155 PF03605 Anaerobic c4-dicarboxylate membrane transporter AVFI_08160 PF01177 Asp/Glu/Hydantoin racemase AVFI_08165 PF03918 Cytochrome C biogenesis protein AVFI_08170 PF08534 Redoxin AVFI_08175 PF01578 Cytochrome C assembly protein AVFI_08175 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AVFI_08180 PF03916 Polysulphide reductase, NrfD AVFI_08185 PF13247 4Fe-4S dicluster domain AVFI_08195 PF02335 Cytochrome c552 AVFI_08205 PF02253 Phospholipase A1 AVFI_08210 PF04408 Helicase associated domain (HA2) AVFI_08210 PF00271 Helicase conserved C-terminal domain AVFI_08210 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AVFI_08210 PF00270 DEAD/DEAH box helicase AVFI_08215 PF03949 Malic enzyme, NAD binding domain AVFI_08215 PF00390 Malic enzyme, N-terminal domain AVFI_08225 PF02698 DUF218 domain AVFI_08230 PF00990 Diguanylate cyclase, GGDEF domain AVFI_08230 PF08448 PAS fold AVFI_08250 PF12558 ATP-binding cassette cobalt transporter AVFI_08250 PF00005 ABC transporter AVFI_08255 PF07155 ECF-type riboflavin transporter, S component AVFI_08295 PF01479 S4 domain AVFI_08295 PF00849 RNA pseudouridylate synthase AVFI_08305 PF01037 Lrp/AsnC ligand binding domain AVFI_08305 PF13404 AsnC-type helix-turn-helix domain AVFI_08310 PF00291 Pyridoxal-phosphate dependent enzyme AVFI_08315 PF06508 Queuosine biosynthesis protein QueC AVFI_08325 PF00873 AcrB/AcrD/AcrF family AVFI_08330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_08365 PF03372 Endonuclease/Exonuclease/phosphatase family AVFI_08375 PF13417 Glutathione S-transferase, N-terminal domain AVFI_08375 PF04399 Glutaredoxin 2, C terminal domain AVFI_08380 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_08385 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_08390 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVFI_08395 PF00005 ABC transporter AVFI_08405 PF01228 Glycine radical AVFI_08405 PF02901 Pyruvate formate lyase-like AVFI_08410 PF01610 Transposase AVFI_08410 PF13542 Helix-turn-helix domain of transposase family ISL3 AVFI_08410 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AVFI_08415 PF04055 Radical SAM superfamily AVFI_08420 PF08007 Cupin superfamily protein AVFI_08425 PF00005 ABC transporter AVFI_08425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVFI_08430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVFI_08430 PF00005 ABC transporter AVFI_08435 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_08435 PF12911 N-terminal TM domain of oligopeptide transport permease C AVFI_08440 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_08445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVFI_08450 PF08329 Chitinase A, N-terminal domain AVFI_08450 PF00704 Glycosyl hydrolases family 18 AVFI_08455 PF00265 Thymidine kinase AVFI_08460 PF01406 tRNA synthetases class I (C) catalytic domain AVFI_08460 PF09190 DALR domain AVFI_08465 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVFI_08470 PF00149 Calcineurin-like phosphoesterase AVFI_08475 PF00563 EAL domain AVFI_08475 PF08668 HDOD domain AVFI_08480 PF02810 SEC-C motif AVFI_08485 PF00209 Sodium:neurotransmitter symporter family AVFI_08490 PF13091 PLD-like domain AVFI_08490 PF13396 Phospholipase_D-nuclease N-terminal AVFI_08495 PF01227 GTP cyclohydrolase I AVFI_08500 PF00994 Probable molybdopterin binding domain AVFI_08500 PF03454 MoeA C-terminal region (domain IV) AVFI_08500 PF03453 MoeA N-terminal region (domain I and II) AVFI_08505 PF00899 ThiF family AVFI_08510 PF12849 PBP superfamily domain AVFI_08515 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_08520 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_08525 PF00005 ABC transporter AVFI_08530 PF01168 Alanine racemase, N-terminal domain AVFI_08545 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AVFI_08550 PF07963 Prokaryotic N-terminal methylation motif AVFI_08550 PF00114 Pilin (bacterial filament) AVFI_08555 PF02743 Cache domain AVFI_08555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_08555 PF00672 HAMP domain AVFI_08560 PF01627 Hpt domain AVFI_08560 PF00072 Response regulator receiver domain AVFI_08560 PF18415 Histidine kinase receptor ArcB trans-membrane domain AVFI_08560 PF00512 His Kinase A (phospho-acceptor) domain AVFI_08560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_08560 PF00989 PAS fold AVFI_08565 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AVFI_08570 PF02142 MGS-like domain AVFI_08575 PF00580 UvrD/REP helicase N-terminal domain AVFI_08575 PF13361 UvrD-like helicase C-terminal domain AVFI_08575 PF12462 DNA helicase IV / RNA helicase N terminal AVFI_08580 PF12805 FUSC-like inner membrane protein yccS AVFI_08620 PF01066 CDP-alcohol phosphatidyltransferase AVFI_08625 PF08459 UvrC Helix-hairpin-helix N-terminal AVFI_08625 PF02151 UvrB/uvrC motif AVFI_08625 PF01541 GIY-YIG catalytic domain AVFI_08630 PF00196 Bacterial regulatory proteins, luxR family AVFI_08630 PF00072 Response regulator receiver domain AVFI_08635 PF00136 DNA polymerase family B AVFI_08635 PF03104 DNA polymerase family B, exonuclease domain AVFI_08645 PF13006 Insertion element 4 transposase N-terminal AVFI_08645 PF01609 Transposase DDE domain AVFI_08650 PF03553 Na+/H+ antiporter family AVFI_08655 PF00816 H-NS histone family AVFI_08660 PF06629 MltA-interacting protein MipA AVFI_08665 PF07840 FadR C-terminal domain AVFI_08665 PF00392 Bacterial regulatory proteins, gntR family AVFI_08670 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AVFI_08675 PF02600 Disulfide bond formation protein DsbB AVFI_08680 PF02810 SEC-C motif AVFI_08680 PF07517 SecA DEAD-like domain AVFI_08680 PF01043 SecA preprotein cross-linking domain AVFI_08680 PF07516 SecA Wing and Scaffold domain AVFI_08685 PF07963 Prokaryotic N-terminal methylation motif AVFI_08685 PF14245 Type IV pilin PilA AVFI_08690 PF01207 Dihydrouridine synthase (Dus) AVFI_08695 PF00990 Diguanylate cyclase, GGDEF domain AVFI_08695 PF05230 MASE2 domain AVFI_08705 PF01131 DNA topoisomerase AVFI_08705 PF01751 Toprim domain AVFI_08710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVFI_08710 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_08715 PF01343 Peptidase family S49 AVFI_08720 PF17763 Glutaminase/Asparaginase C-terminal domain AVFI_08720 PF00710 Asparaginase, N-terminal AVFI_08725 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVFI_08725 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVFI_08730 PF03553 Na+/H+ antiporter family AVFI_08740 PF04245 37-kD nucleoid-associated bacterial protein AVFI_08745 PF07208 Protein of unknown function (DUF1414) AVFI_08750 PF11893 Domain of unknown function (DUF3413) AVFI_08750 PF00884 Sulfatase AVFI_08765 PF01548 Transposase AVFI_08765 PF02371 Transposase IS116/IS110/IS902 family AVFI_08780 PF00194 Eukaryotic-type carbonic anhydrase AVFI_08795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_08800 PF01048 Phosphorylase superfamily AVFI_08825 PF00106 short chain dehydrogenase AVFI_08835 PF03692 Putative zinc- or iron-chelating domain AVFI_08840 PF03692 Putative zinc- or iron-chelating domain AVFI_08865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AVFI_08865 PF02378 Phosphotransferase system, EIIC AVFI_08865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVFI_08870 PF00128 Alpha amylase, catalytic domain AVFI_08875 PF07748 Glycosyl hydrolases family 38 C-terminal domain AVFI_08875 PF01074 Glycosyl hydrolases family 38 N-terminal domain AVFI_08875 PF09261 Alpha mannosidase middle domain AVFI_08880 PF02378 Phosphotransferase system, EIIC AVFI_08895 PF00501 AMP-binding enzyme AVFI_08895 PF13193 AMP-binding enzyme C-terminal domain AVFI_08900 PF13378 Enolase C-terminal domain-like AVFI_08905 PF00378 Enoyl-CoA hydratase/isomerase AVFI_08910 PF12697 Alpha/beta hydrolase family AVFI_08915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVFI_08915 PF16582 Middle domain of thiamine pyrophosphate AVFI_08915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVFI_08920 PF00425 chorismate binding enzyme AVFI_08925 PF00155 Aminotransferase class I and II AVFI_08930 PF01872 RibD C-terminal domain AVFI_08935 PF06719 AraC-type transcriptional regulator N-terminus AVFI_08935 PF12833 Helix-turn-helix domain AVFI_08940 PF00465 Iron-containing alcohol dehydrogenase AVFI_08950 PF00892 EamA-like transporter family AVFI_08955 PF00171 Aldehyde dehydrogenase family AVFI_08960 PF01966 HD domain AVFI_08960 PF13286 Phosphohydrolase-associated domain AVFI_08975 PF02132 RecR protein AVFI_08975 PF13662 Toprim domain AVFI_08980 PF02575 YbaB/EbfC DNA-binding family AVFI_08985 PF12170 DNA polymerase III tau subunit V interacting with alpha AVFI_08985 PF12169 DNA polymerase III subunits gamma and tau domain III AVFI_08990 PF00156 Phosphoribosyl transferase domain AVFI_08995 PF04304 Protein of unknown function (DUF454) AVFI_09000 PF00072 Response regulator receiver domain AVFI_09005 PF03466 LysR substrate binding domain AVFI_09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_09010 PF00156 Phosphoribosyl transferase domain AVFI_09015 PF02674 Colicin V production protein AVFI_09020 PF05036 Sporulation related domain AVFI_09025 PF02875 Mur ligase family, glutamate ligase domain AVFI_09025 PF08245 Mur ligase middle domain AVFI_09030 PF01039 Carboxyl transferase domain AVFI_09030 PF17848 Acetyl-coA carboxylase zinc finger domain AVFI_09035 PF01416 tRNA pseudouridine synthase AVFI_09045 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVFI_09045 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVFI_09050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVFI_09050 PF11890 Domain of unknown function (DUF3410) AVFI_09050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVFI_09055 PF02801 Beta-ketoacyl synthase, C-terminal domain AVFI_09055 PF00109 Beta-ketoacyl synthase, N-terminal domain AVFI_09060 PF01266 FAD dependent oxidoreductase AVFI_09060 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AVFI_09065 PF13406 Transglycosylase SLT domain AVFI_09070 PF05166 YcgL domain AVFI_09075 PF03775 Septum formation inhibitor MinC, C-terminal domain AVFI_09075 PF05209 Septum formation inhibitor MinC, N-terminal domain AVFI_09080 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AVFI_09085 PF03776 Septum formation topological specificity factor MinE AVFI_09090 PF00570 HRDC domain AVFI_09090 PF01612 3'-5' exonuclease AVFI_09095 PF00501 AMP-binding enzyme AVFI_09095 PF13193 AMP-binding enzyme C-terminal domain AVFI_09100 PF00561 alpha/beta hydrolase fold AVFI_09105 PF03843 Outer membrane lipoprotein Slp family AVFI_09115 PF00814 Glycoprotease family AVFI_09120 PF13307 Helicase C-terminal domain AVFI_09120 PF04851 Type III restriction enzyme, res subunit AVFI_09125 PF00551 Formyl transferase AVFI_09125 PF01842 ACT domain AVFI_09130 PF00561 alpha/beta hydrolase fold AVFI_09135 PF12833 Helix-turn-helix domain AVFI_09135 PF02311 AraC-like ligand binding domain AVFI_09140 PF00892 EamA-like transporter family AVFI_09145 PF00155 Aminotransferase class I and II AVFI_09150 PF00367 phosphotransferase system, EIIB AVFI_09150 PF02378 Phosphotransferase system, EIIC AVFI_09155 PF00356 Bacterial regulatory proteins, lacI family AVFI_09155 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AVFI_09160 PF01679 Proteolipid membrane potential modulator AVFI_09165 PF08267 Cobalamin-independent synthase, N-terminal domain AVFI_09165 PF01717 Cobalamin-independent synthase, Catalytic domain AVFI_09170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_09170 PF03466 LysR substrate binding domain AVFI_09185 PF03606 C4-dicarboxylate anaerobic carrier AVFI_09190 PF08497 Radical SAM N-terminal AVFI_09190 PF04055 Radical SAM superfamily AVFI_09190 PF11842 Domain of unknown function (DUF3362) AVFI_09195 PF00579 tRNA synthetases class I (W and Y) AVFI_09215 PF00209 Sodium:neurotransmitter symporter family AVFI_09230 PF00367 phosphotransferase system, EIIB AVFI_09230 PF02378 Phosphotransferase system, EIIC AVFI_09235 PF01026 TatD related DNase AVFI_09240 PF09115 DNA polymerase III, delta subunit, C terminal AVFI_09245 PF02223 Thymidylate kinase AVFI_09250 PF02618 YceG-like family AVFI_09255 PF01063 Amino-transferase class IV AVFI_09260 PF02801 Beta-ketoacyl synthase, C-terminal domain AVFI_09260 PF00109 Beta-ketoacyl synthase, N-terminal domain AVFI_09265 PF00550 Phosphopantetheine attachment site AVFI_09275 PF00698 Acyl transferase domain AVFI_09280 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVFI_09280 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVFI_09285 PF02504 Fatty acid synthesis protein AVFI_09290 PF01783 Ribosomal L32p protein family AVFI_09295 PF02620 Large ribosomal RNA subunit accumulation protein YceD AVFI_09300 PF02545 Maf-like protein AVFI_09305 PF01479 S4 domain AVFI_09305 PF00849 RNA pseudouridylate synthase AVFI_09310 PF10150 Ribonuclease E/G family AVFI_09310 PF00575 S1 RNA binding domain AVFI_09310 PF12111 Polyribonucleotide phosphorylase C terminal AVFI_09315 PF01740 STAS domain AVFI_09315 PF00916 Sulfate permease family AVFI_09320 PF12557 Cob(I)alamin adenosyltransferase N terminal AVFI_09320 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AVFI_09335 PF00485 Phosphoribulokinase / Uridine kinase family AVFI_09340 PF10609 NUBPL iron-transfer P-loop NTPase AVFI_09345 PF01588 Putative tRNA binding domain AVFI_09345 PF09334 tRNA synthetases class I (M) AVFI_09350 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AVFI_09355 PF18073 Rubredoxin metal binding domain AVFI_09360 PF06305 Lipopolysaccharide assembly protein A domain AVFI_09365 PF00216 Bacterial DNA-binding protein AVFI_09370 PF00575 S1 RNA binding domain AVFI_09375 PF02224 Cytidylate kinase AVFI_09380 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVFI_09385 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AVFI_09390 PF04376 Arginine-tRNA-protein transferase, N terminus AVFI_09390 PF04377 Arginine-tRNA-protein transferase, C terminus AVFI_09395 PF01176 Translation initiation factor 1A / IF-1 AVFI_09400 PF00004 ATPase family associated with various cellular activities (AAA) AVFI_09400 PF07724 AAA domain (Cdc48 subfamily) AVFI_09400 PF17871 AAA lid domain AVFI_09400 PF02861 Clp amino terminal domain, pathogenicity island component AVFI_09400 PF10431 C-terminal, D2-small domain, of ClpB protein AVFI_09405 PF02617 ATP-dependent Clp protease adaptor protein ClpS AVFI_09410 PF00313 'Cold-shock' DNA-binding domain AVFI_09420 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AVFI_09430 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AVFI_09430 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AVFI_09435 PF08298 PrkA AAA domain AVFI_09435 PF06798 PrkA serine protein kinase C-terminal domain AVFI_09440 PF04285 Protein of unknown function (DUF444) AVFI_09445 PF04293 SpoVR like protein AVFI_09450 PF03971 Monomeric isocitrate dehydrogenase AVFI_09455 PF00849 RNA pseudouridylate synthase AVFI_09475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_09485 PF00970 Oxidoreductase FAD-binding domain AVFI_09485 PF00175 Oxidoreductase NAD-binding domain AVFI_09490 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_09490 PF18113 Rubredoxin binding C-terminal domain AVFI_09495 PF00258 Flavodoxin AVFI_09495 PF00753 Metallo-beta-lactamase superfamily AVFI_09495 PF00301 Rubredoxin AVFI_09500 PF01590 GAF domain AVFI_09500 PF00158 Sigma-54 interaction domain AVFI_09510 PF04356 Protein of unknown function (DUF489) AVFI_09515 PF00206 Lyase AVFI_09515 PF08328 Adenylosuccinate lyase C-terminal AVFI_09525 PF00672 HAMP domain AVFI_09525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_09540 PF01970 Tripartite tricarboxylate transporter TctA family AVFI_09545 PF00270 DEAD/DEAH box helicase AVFI_09545 PF00271 Helicase conserved C-terminal domain AVFI_09550 PF01734 Patatin-like phospholipase AVFI_09555 PF04073 Aminoacyl-tRNA editing domain AVFI_09560 PF12431 Transcriptional regulator AVFI_09560 PF00072 Response regulator receiver domain AVFI_09565 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AVFI_09565 PF00989 PAS fold AVFI_09565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_09565 PF17203 Single cache domain 3 AVFI_09570 PF01268 Formate--tetrahydrofolate ligase AVFI_09575 PF03887 YfbU domain AVFI_09580 PF00267 Gram-negative porin AVFI_09585 PF13847 Methyltransferase domain AVFI_09595 PF00654 Voltage gated chloride channel AVFI_09600 PF03279 Bacterial lipid A biosynthesis acyltransferase AVFI_09610 PF08891 YfcL protein AVFI_09615 PF04315 Elongation factor P hydroxylase AVFI_09620 PF02308 MgtC family AVFI_09625 PF03458 UPF0126 domain AVFI_09630 PF01264 Chorismate synthase AVFI_09635 PF05175 Methyltransferase small domain AVFI_09640 PF01713 Smr domain AVFI_09645 PF00300 Histidine phosphatase superfamily (branch 1) AVFI_09650 PF00675 Insulinase (Peptidase family M16) AVFI_09650 PF05193 Peptidase M16 inactive domain AVFI_09650 PF16187 Middle or third domain of peptidase_M16 AVFI_09655 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVFI_09655 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVFI_09655 PF00378 Enoyl-CoA hydratase/isomerase AVFI_09660 PF00108 Thiolase, N-terminal domain AVFI_09660 PF02803 Thiolase, C-terminal domain AVFI_09665 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AVFI_09670 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AVFI_09685 PF04333 MlaA lipoprotein AVFI_09690 PF03918 Cytochrome C biogenesis protein AVFI_09695 PF03918 Cytochrome C biogenesis protein AVFI_09700 PF08534 Redoxin AVFI_09705 PF01578 Cytochrome C assembly protein AVFI_09705 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AVFI_09710 PF03100 CcmE AVFI_09720 PF01578 Cytochrome C assembly protein AVFI_09725 PF03379 CcmB protein AVFI_09730 PF00005 ABC transporter AVFI_09740 PF01584 CheW-like domain AVFI_09750 PF13614 AAA domain AVFI_09755 PF01339 CheB methylesterase AVFI_09755 PF00072 Response regulator receiver domain AVFI_09760 PF02895 Signal transducing histidine kinase, homodimeric domain AVFI_09760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_09760 PF01584 CheW-like domain AVFI_09760 PF01627 Hpt domain AVFI_09760 PF00072 Response regulator receiver domain AVFI_09765 PF04344 Chemotaxis phosphatase, CheZ AVFI_09770 PF00072 Response regulator receiver domain AVFI_09775 PF04539 Sigma-70 region 3 AVFI_09775 PF04542 Sigma-70 region 2 AVFI_09775 PF04545 Sigma-70, region 4 AVFI_09780 PF10609 NUBPL iron-transfer P-loop NTPase AVFI_09785 PF00448 SRP54-type protein, GTPase domain AVFI_09790 PF00771 FHIPEP family AVFI_09800 PF01312 FlhB HrpN YscU SpaS Family AVFI_09805 PF01311 Bacterial export proteins, family 1 AVFI_09810 PF01313 Bacterial export proteins, family 3 AVFI_09815 PF00813 FliP family AVFI_09820 PF04347 Flagellar biosynthesis protein, FliO AVFI_09825 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AVFI_09830 PF02154 Flagellar motor switch protein FliM AVFI_09830 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AVFI_09850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVFI_09850 PF18269 T3SS EscN ATPase C-terminal domain AVFI_09860 PF14841 FliG middle domain AVFI_09860 PF14842 FliG N-terminal domain AVFI_09860 PF01706 FliG C-terminal domain AVFI_09865 PF08345 Flagellar M-ring protein C-terminal AVFI_09865 PF01514 Secretory protein of YscJ/FliF family AVFI_09870 PF02049 Flagellar hook-basal body complex protein FliE AVFI_09875 PF00158 Sigma-54 interaction domain AVFI_09875 PF00072 Response regulator receiver domain AVFI_09875 PF02954 Bacterial regulatory protein, Fis family AVFI_09880 PF00512 His Kinase A (phospho-acceptor) domain AVFI_09880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_09880 PF13188 PAS domain AVFI_09885 PF00158 Sigma-54 interaction domain AVFI_09885 PF06490 Flagellar regulatory protein FleQ AVFI_09885 PF02954 Bacterial regulatory protein, Fis family AVFI_09890 PF02561 Flagellar protein FliS AVFI_09900 PF07196 Flagellin hook IN motif AVFI_09900 PF07195 Flagellar hook-associated protein 2 C-terminus AVFI_09900 PF02465 Flagellar hook-associated protein 2 N-terminus AVFI_09905 PF03646 FlaG protein AVFI_09910 PF07196 Flagellin hook IN motif AVFI_09910 PF00669 Bacterial flagellin N-terminal helical region AVFI_09910 PF00700 Bacterial flagellin C-terminal helical region AVFI_09915 PF00700 Bacterial flagellin C-terminal helical region AVFI_09915 PF07196 Flagellin hook IN motif AVFI_09915 PF00669 Bacterial flagellin N-terminal helical region AVFI_09920 PF00700 Bacterial flagellin C-terminal helical region AVFI_09920 PF07196 Flagellin hook IN motif AVFI_09920 PF00669 Bacterial flagellin N-terminal helical region AVFI_09925 PF00700 Bacterial flagellin C-terminal helical region AVFI_09925 PF07196 Flagellin hook IN motif AVFI_09925 PF00669 Bacterial flagellin N-terminal helical region AVFI_09935 PF07196 Flagellin hook IN motif AVFI_09935 PF00700 Bacterial flagellin C-terminal helical region AVFI_09935 PF00669 Bacterial flagellin N-terminal helical region AVFI_09945 PF07196 Flagellin hook IN motif AVFI_09945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVFI_09950 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AVFI_09950 PF10135 Rod binding protein AVFI_09955 PF02119 Flagellar P-ring protein AVFI_09960 PF02107 Flagellar L-ring protein AVFI_09965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVFI_09965 PF00460 Flagella basal body rod protein AVFI_09970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVFI_09970 PF00460 Flagella basal body rod protein AVFI_09975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVFI_09975 PF07559 Flagellar basal body protein FlaE AVFI_09975 PF00460 Flagella basal body rod protein AVFI_09980 PF03963 Flagellar hook capping protein - N-terminal region AVFI_09980 PF13860 FlgD Ig-like domain AVFI_09980 PF13861 FlgD Tudor-like domain AVFI_09985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVFI_09985 PF00460 Flagella basal body rod protein AVFI_09990 PF00460 Flagella basal body rod protein AVFI_09995 PF03705 CheR methyltransferase, all-alpha domain AVFI_09995 PF01739 CheR methyltransferase, SAM binding domain AVFI_10000 PF01584 CheW-like domain AVFI_10000 PF00072 Response regulator receiver domain AVFI_10010 PF04316 Anti-sigma-28 factor, FlgM AVFI_10045 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVFI_10055 PF03573 outer membrane porin, OprD family AVFI_10065 PF03573 outer membrane porin, OprD family AVFI_10070 PF12826 Helix-hairpin-helix motif AVFI_10070 PF03120 NAD-dependent DNA ligase OB-fold domain AVFI_10070 PF01653 NAD-dependent DNA ligase adenylation domain AVFI_10070 PF00533 BRCA1 C Terminus (BRCT) domain AVFI_10070 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AVFI_10075 PF04354 ZipA, C-terminal FtsZ-binding domain AVFI_10085 PF00291 Pyridoxal-phosphate dependent enzyme AVFI_10090 PF00381 PTS HPr component phosphorylation site AVFI_10095 PF05524 PEP-utilising enzyme, N-terminal AVFI_10095 PF00391 PEP-utilising enzyme, mobile domain AVFI_10095 PF02896 PEP-utilising enzyme, TIM barrel domain AVFI_10100 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AVFI_10105 PF04261 Dyp-type peroxidase family AVFI_10115 PF11143 Protein of unknown function (DUF2919) AVFI_10130 PF03264 NapC/NirT cytochrome c family, N-terminal region AVFI_10135 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AVFI_10140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVFI_10140 PF00384 Molybdopterin oxidoreductase AVFI_10140 PF01568 Molydopterin dinucleotide binding domain AVFI_10150 PF13187 4Fe-4S dicluster domain AVFI_10150 PF12838 4Fe-4S dicluster domain AVFI_10155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_10155 PF07730 Histidine kinase AVFI_10155 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AVFI_10155 PF00672 HAMP domain AVFI_10160 PF00196 Bacterial regulatory proteins, luxR family AVFI_10160 PF00072 Response regulator receiver domain AVFI_10180 PF03960 ArsC family AVFI_10185 PF07687 Peptidase dimerisation domain AVFI_10185 PF01546 Peptidase family M20/M25/M40 AVFI_10190 PF02557 D-alanyl-D-alanine carboxypeptidase AVFI_10200 PF06804 NlpB/DapX lipoprotein AVFI_10205 PF00701 Dihydrodipicolinate synthetase family AVFI_10210 PF01842 ACT domain AVFI_10215 PF00578 AhpC/TSA family AVFI_10220 PF01594 AI-2E family transporter AVFI_10230 PF01435 Peptidase family M48 AVFI_10230 PF13181 Tetratricopeptide repeat AVFI_10235 PF03960 ArsC family AVFI_10250 PF00860 Permease family AVFI_10260 PF02769 AIR synthase related protein, C-terminal domain AVFI_10260 PF00586 AIR synthase related protein, N-terminal domain AVFI_10265 PF00551 Formyl transferase AVFI_10275 PF13230 Glutamine amidotransferases class-II AVFI_10280 PF13580 SIS domain AVFI_10285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVFI_10285 PF02770 Acyl-CoA dehydrogenase, middle domain AVFI_10285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVFI_10285 PF09317 Domain of unknown function (DUF1974) AVFI_10300 PF00929 Exonuclease AVFI_10305 PF00075 RNase H AVFI_10310 PF08241 Methyltransferase domain AVFI_10315 PF16123 Hydroxyacylglutathione hydrolase C-terminus AVFI_10315 PF00753 Metallo-beta-lactamase superfamily AVFI_10320 PF01476 LysM domain AVFI_10320 PF01464 Transglycosylase SLT domain AVFI_10335 PF00543 Nitrogen regulatory protein P-II AVFI_10340 PF00034 Cytochrome c AVFI_10345 PF11734 TilS substrate C-terminal domain AVFI_10345 PF01171 PP-loop family AVFI_10345 PF09179 TilS substrate binding domain AVFI_10350 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AVFI_10355 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVFI_10355 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVFI_10355 PF14579 Helix-hairpin-helix motif AVFI_10355 PF01336 OB-fold nucleic acid binding domain AVFI_10355 PF02811 PHP domain AVFI_10360 PF01351 Ribonuclease HII AVFI_10365 PF02684 Lipid-A-disaccharide synthetase AVFI_10370 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AVFI_10370 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_10375 PF07977 FabA-like domain AVFI_10380 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AVFI_10380 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_10385 PF03938 Outer membrane protein (OmpH-like) AVFI_10390 PF01103 Surface antigen AVFI_10390 PF07244 Surface antigen variable number repeat AVFI_10395 PF17820 PDZ domain AVFI_10395 PF02163 Peptidase family M50 AVFI_10400 PF13288 DXP reductoisomerase C-terminal domain AVFI_10400 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AVFI_10400 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AVFI_10410 PF01255 Putative undecaprenyl diphosphate synthase AVFI_10415 PF01765 Ribosome recycling factor AVFI_10420 PF00696 Amino acid kinase family AVFI_10425 PF00889 Elongation factor TS AVFI_10430 PF00318 Ribosomal protein S2 AVFI_10435 PF00557 Metallopeptidase family M24 AVFI_10440 PF01966 HD domain AVFI_10440 PF08335 GlnD PII-uridylyltransferase AVFI_10440 PF01842 ACT domain AVFI_10440 PF01909 Nucleotidyltransferase domain AVFI_10445 PF11944 Protein of unknown function (DUF3461) AVFI_10450 PF07549 SecD/SecF GG Motif AVFI_10450 PF02355 Protein export membrane protein AVFI_10455 PF13721 SecD export protein N-terminal TM region AVFI_10455 PF07549 SecD/SecF GG Motif AVFI_10455 PF02355 Protein export membrane protein AVFI_10460 PF02699 Preprotein translocase subunit AVFI_10465 PF01702 Queuine tRNA-ribosyltransferase AVFI_10470 PF02547 Queuosine biosynthesis protein AVFI_10475 PF00571 CBS domain AVFI_10480 PF00463 Isocitrate lyase family AVFI_10485 PF01274 Malate synthase AVFI_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_10490 PF03466 LysR substrate binding domain AVFI_10495 PF10417 C-terminal domain of 1-Cys peroxiredoxin AVFI_10495 PF00578 AhpC/TSA family AVFI_10500 PF03932 CutC family AVFI_10505 PF04076 Bacterial OB fold (BOF) protein AVFI_10515 PF03466 LysR substrate binding domain AVFI_10515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_10520 PF03466 LysR substrate binding domain AVFI_10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_10535 PF01895 PhoU domain AVFI_10540 PF00005 ABC transporter AVFI_10545 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_10550 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_10555 PF12849 PBP superfamily domain AVFI_10560 PF00989 PAS fold AVFI_10560 PF11808 Phosphate regulon sensor protein PhoR AVFI_10560 PF00512 His Kinase A (phospho-acceptor) domain AVFI_10560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_10565 PF00072 Response regulator receiver domain AVFI_10565 PF00486 Transcriptional regulatory protein, C terminal AVFI_10570 PF04381 Putative exonuclease, RdgC AVFI_10575 PF16325 Peptidase family U32 C-terminal domain AVFI_10575 PF01136 Peptidase family U32 AVFI_10580 PF12838 4Fe-4S dicluster domain AVFI_10590 PF00226 DnaJ domain AVFI_10590 PF01556 DnaJ C terminal domain AVFI_10590 PF00684 DnaJ central domain AVFI_10595 PF00012 Hsp70 protein AVFI_10605 PF01025 GrpE AVFI_10610 PF01513 ATP-NAD kinase AVFI_10615 PF02463 RecF/RecN/SMC N terminal domain AVFI_10620 PF04355 SmpA / OmlA family AVFI_10625 PF03658 RnfH family Ubiquitin AVFI_10630 PF03364 Polyketide cyclase / dehydrase and lipid transport AVFI_10635 PF01668 SmpB protein AVFI_10645 PF13356 Arm DNA-binding domain AVFI_10645 PF00589 Phage integrase family AVFI_10650 PF18766 SWI2/SNF2 ATPase AVFI_10650 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVFI_10650 PF12008 Type I restriction and modification enzyme - subunit R C terminal AVFI_10660 PF01420 Type I restriction modification DNA specificity domain AVFI_10665 PF02384 N-6 DNA Methylase AVFI_10665 PF12161 HsdM N-terminal domain AVFI_10670 PF00239 Resolvase, N terminal domain AVFI_10670 PF02796 Helix-turn-helix domain of resolvase AVFI_10690 PF02371 Transposase IS116/IS110/IS902 family AVFI_10690 PF01548 Transposase AVFI_10695 PF13657 HipA N-terminal domain AVFI_10695 PF07804 HipA-like C-terminal domain AVFI_10700 PF01381 Helix-turn-helix AVFI_10710 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_10715 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_10720 PF17912 MalK OB fold domain AVFI_10720 PF00005 ABC transporter AVFI_10720 PF03459 TOBE domain AVFI_10735 PF02903 Alpha amylase, N-terminal ig-like domain AVFI_10735 PF00128 Alpha amylase, catalytic domain AVFI_10735 PF16657 Maltogenic Amylase, C-terminal domain AVFI_10740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_10740 PF03466 LysR substrate binding domain AVFI_10745 PF01769 Divalent cation transporter AVFI_10745 PF00571 CBS domain AVFI_10745 PF03448 MgtE intracellular N domain AVFI_10760 PF03150 Di-haem cytochrome c peroxidase AVFI_10760 PF00034 Cytochrome c AVFI_10760 PF14376 Haem-binding domain AVFI_10765 PF08543 Phosphomethylpyrimidine kinase AVFI_10770 PF01276 Orn/Lys/Arg decarboxylase, major domain AVFI_10770 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AVFI_10770 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AVFI_10775 PF13520 Amino acid permease AVFI_10780 PF01235 Sodium:alanine symporter family AVFI_10790 PF18500 CadC C-terminal domain 1 AVFI_10790 PF00486 Transcriptional regulatory protein, C terminal AVFI_10800 PF04143 Sulphur transport AVFI_10805 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_10805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVFI_10810 PF04204 Homoserine O-succinyltransferase AVFI_10815 PF03605 Anaerobic c4-dicarboxylate membrane transporter AVFI_10820 PF01773 Na+ dependent nucleoside transporter N-terminus AVFI_10820 PF07662 Na+ dependent nucleoside transporter C-terminus AVFI_10820 PF07670 Nucleoside recognition AVFI_10825 PF10063 Uncharacterized integral membrane protein (DUF2301) AVFI_10830 PF00140 Sigma-70 factor, region 1.2 AVFI_10830 PF04542 Sigma-70 region 2 AVFI_10830 PF04539 Sigma-70 region 3 AVFI_10830 PF04545 Sigma-70, region 4 AVFI_10835 PF01551 Peptidase family M23 AVFI_10835 PF01476 LysM domain AVFI_10845 PF01975 Survival protein SurE AVFI_10850 PF01142 tRNA pseudouridine synthase D (TruD) AVFI_10855 PF02542 YgbB family AVFI_10860 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AVFI_10865 PF04977 Septum formation initiator AVFI_10870 PF00113 Enolase, C-terminal TIM barrel domain AVFI_10870 PF03952 Enolase, N-terminal domain AVFI_10875 PF00117 Glutamine amidotransferase class-I AVFI_10875 PF06418 CTP synthase N-terminus AVFI_10885 PF00669 Bacterial flagellin N-terminal helical region AVFI_10885 PF07196 Flagellin hook IN motif AVFI_10885 PF00700 Bacterial flagellin C-terminal helical region AVFI_10890 PF02824 TGS domain AVFI_10890 PF04607 Region found in RelA / SpoT proteins AVFI_10890 PF13291 ACT domain AVFI_10895 PF05958 tRNA (Uracil-5-)-methyltransferase AVFI_10895 PF01938 TRAM domain AVFI_10900 PF00672 HAMP domain AVFI_10900 PF00512 His Kinase A (phospho-acceptor) domain AVFI_10900 PF01627 Hpt domain AVFI_10900 PF00072 Response regulator receiver domain AVFI_10900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVFI_10900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_10905 PF01648 4'-phosphopantetheinyl transferase superfamily AVFI_10910 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AVFI_10915 PF11967 Recombination protein O N terminal AVFI_10915 PF02565 Recombination protein O C terminal AVFI_10920 PF07650 KH domain AVFI_10920 PF01926 50S ribosome-binding GTPase AVFI_10925 PF14622 Ribonuclease-III-like AVFI_10925 PF00035 Double-stranded RNA binding motif AVFI_10930 PF10502 Signal peptidase, peptidase S26 AVFI_10935 PF00679 Elongation factor G C-terminus AVFI_10935 PF00009 Elongation factor Tu GTP binding domain AVFI_10935 PF03144 Elongation factor Tu domain 2 AVFI_10935 PF06421 GTP-binding protein LepA C-terminus AVFI_10945 PF03888 MucB/RseB N-terminal domain AVFI_10945 PF17188 MucB/RseB C-terminal domain AVFI_10950 PF03872 Anti sigma-E protein RseA, N-terminal domain AVFI_10950 PF03873 Anti sigma-E protein RseA, C-terminal domain AVFI_10955 PF04542 Sigma-70 region 2 AVFI_10955 PF08281 Sigma-70, region 4 AVFI_10960 PF00890 FAD binding domain AVFI_10960 PF02910 Fumarate reductase flavoprotein C-term AVFI_10970 PF03937 Flavinator of succinate dehydrogenase AVFI_10980 PF03129 Anticodon binding domain AVFI_10980 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVFI_10980 PF04073 Aminoacyl-tRNA editing domain AVFI_10990 PF01494 FAD binding domain AVFI_10995 PF01494 FAD binding domain AVFI_11000 PF03695 Uncharacterised protein family (UPF0149) AVFI_11005 PF05164 Cell division protein ZapA AVFI_11015 PF01812 5-formyltetrahydrofolate cyclo-ligase family AVFI_11020 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AVFI_11025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVFI_11025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVFI_11025 PF01842 ACT domain AVFI_11035 PF00924 Mechanosensitive ion channel AVFI_11035 PF05552 Conserved TM helix AVFI_11040 PF03883 Peroxide stress protein YaaA AVFI_11045 PF01235 Sodium:alanine symporter family AVFI_11060 PF03167 Uracil DNA glycosylase superfamily AVFI_11065 PF01261 Xylose isomerase-like TIM barrel AVFI_11070 PF01228 Glycine radical AVFI_11075 PF00291 Pyridoxal-phosphate dependent enzyme AVFI_11075 PF14821 Threonine synthase N terminus AVFI_11080 PF08544 GHMP kinases C terminal AVFI_11080 PF00288 GHMP kinases N terminal domain AVFI_11085 PF00696 Amino acid kinase family AVFI_11085 PF01842 ACT domain AVFI_11085 PF13840 ACT domain AVFI_11085 PF00742 Homoserine dehydrogenase AVFI_11085 PF03447 Homoserine dehydrogenase, NAD binding domain AVFI_11090 PF03737 Aldolase/RraA AVFI_11095 PF00072 Response regulator receiver domain AVFI_11095 PF00486 Transcriptional regulatory protein, C terminal AVFI_11105 PF00072 Response regulator receiver domain AVFI_11105 PF00989 PAS fold AVFI_11105 PF01627 Hpt domain AVFI_11105 PF18415 Histidine kinase receptor ArcB trans-membrane domain AVFI_11105 PF00512 His Kinase A (phospho-acceptor) domain AVFI_11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_11110 PF04055 Radical SAM superfamily AVFI_11110 PF16199 Radical_SAM C-terminal domain AVFI_11115 PF01493 GXGXG motif AVFI_11115 PF01645 Conserved region in glutamate synthase AVFI_11115 PF04898 Glutamate synthase central domain AVFI_11115 PF00310 Glutamine amidotransferases class-II AVFI_11120 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AVFI_11120 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_11155 PF01048 Phosphorylase superfamily AVFI_11165 PF03458 UPF0126 domain AVFI_11170 PF04225 Opacity-associated protein A LysM-like domain AVFI_11170 PF01551 Peptidase family M23 AVFI_11175 PF00873 AcrB/AcrD/AcrF family AVFI_11180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_11185 PF01521 Iron-sulphur cluster biosynthesis AVFI_11190 PF00202 Aminotransferase class-III AVFI_11195 PF01594 AI-2E family transporter AVFI_11200 PF08468 Methyltransferase small domain N-terminal AVFI_11200 PF05175 Methyltransferase small domain AVFI_11205 PF09308 LuxQ, periplasmic AVFI_11205 PF00072 Response regulator receiver domain AVFI_11205 PF00512 His Kinase A (phospho-acceptor) domain AVFI_11205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_11210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVFI_11215 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_11220 PF12911 N-terminal TM domain of oligopeptide transport permease C AVFI_11220 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_11225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVFI_11225 PF00005 ABC transporter AVFI_11230 PF00005 ABC transporter AVFI_11230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVFI_11240 PF01869 BadF/BadG/BcrA/BcrD ATPase family AVFI_11245 PF02838 Glycosyl hydrolase family 20, domain 2 AVFI_11245 PF00728 Glycosyl hydrolase family 20, catalytic domain AVFI_11250 PF06165 Glycosyltransferase family 36 AVFI_11250 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AVFI_11255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVFI_11255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVFI_11255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVFI_11255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVFI_11260 PF00005 ABC transporter AVFI_11260 PF08402 TOBE domain AVFI_11270 PF13416 Bacterial extracellular solute-binding protein AVFI_11275 PF00909 Ammonium Transporter Family AVFI_11280 PF00543 Nitrogen regulatory protein P-II AVFI_11285 PF06062 Uncharacterised protein family (UPF0231) AVFI_11290 PF05651 Putative sugar diacid recognition AVFI_11290 PF17853 GGDEF-like domain AVFI_11290 PF13556 PucR C-terminal helix-turn-helix domain AVFI_11295 PF02447 GntP family permease AVFI_11300 PF02595 Glycerate kinase family AVFI_11305 PF11791 Aconitate B N-terminal domain AVFI_11305 PF06434 Aconitate hydratase 2 N-terminus AVFI_11305 PF00330 Aconitase family (aconitate hydratase) AVFI_11310 PF01734 Patatin-like phospholipase AVFI_11315 PF01609 Transposase DDE domain AVFI_11315 PF13006 Insertion element 4 transposase N-terminal AVFI_11350 PF17200 Single Cache domain 2 AVFI_11350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_11350 PF00672 HAMP domain AVFI_11370 PF00912 Transglycosylase AVFI_11370 PF00905 Penicillin binding protein transpeptidase domain AVFI_11370 PF14814 Bifunctional transglycosylase second domain AVFI_11375 PF00270 DEAD/DEAH box helicase AVFI_11375 PF04408 Helicase associated domain (HA2) AVFI_11375 PF00271 Helicase conserved C-terminal domain AVFI_11375 PF08482 ATP-dependent helicase C-terminal AVFI_11380 PF17746 SfsA N-terminal OB domain AVFI_11380 PF03749 Sugar fermentation stimulation protein RE domain AVFI_11385 PF01258 Prokaryotic dksA/traR C4-type zinc finger AVFI_11390 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVFI_11395 PF12626 Polymerase A arginine-rich C-terminus AVFI_11395 PF12627 Probable RNA and SrmB- binding site of polymerase A AVFI_11395 PF01743 Poly A polymerase head domain AVFI_11400 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AVFI_11405 PF02548 Ketopantoate hydroxymethyltransferase AVFI_11410 PF02569 Pantoate-beta-alanine ligase AVFI_11415 PF01061 ABC-2 type transporter AVFI_11420 PF00005 ABC transporter AVFI_11425 PF01740 STAS domain AVFI_11425 PF00916 Sulfate permease family AVFI_11430 PF00484 Carbonic anhydrase AVFI_11440 PF00156 Phosphoribosyl transferase domain AVFI_11445 PF00440 Bacterial regulatory proteins, tetR family AVFI_11455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVFI_11455 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_11460 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVFI_11460 PF00364 Biotin-requiring enzyme AVFI_11460 PF02817 e3 binding domain AVFI_11465 PF17831 Pyruvate dehydrogenase E1 component middle domain AVFI_11465 PF00456 Transketolase, thiamine diphosphate binding domain AVFI_11470 PF07729 FCD domain AVFI_11470 PF00392 Bacterial regulatory proteins, gntR family AVFI_11475 PF01510 N-acetylmuramoyl-L-alanine amidase AVFI_11480 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AVFI_11480 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AVFI_11485 PF07963 Prokaryotic N-terminal methylation motif AVFI_11485 PF00114 Pilin (bacterial filament) AVFI_11490 PF00437 Type II/IV secretion system protein AVFI_11490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AVFI_11495 PF00482 Type II secretion system (T2SS), protein F AVFI_11500 PF06750 Bacterial Peptidase A24 N-terminal domain AVFI_11500 PF01478 Type IV leader peptidase family AVFI_11505 PF01121 Dephospho-CoA kinase AVFI_11510 PF07072 Cell division protein AVFI_11515 PF03884 DNA gyrase inhibitor YacG AVFI_11520 PF00293 NUDIX domain AVFI_11525 PF02810 SEC-C motif AVFI_11525 PF07517 SecA DEAD-like domain AVFI_11525 PF01043 SecA preprotein cross-linking domain AVFI_11525 PF07516 SecA Wing and Scaffold domain AVFI_11535 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AVFI_11540 PF00091 Tubulin/FtsZ family, GTPase domain AVFI_11540 PF12327 FtsZ family, C-terminal domain AVFI_11545 PF02491 SHS2 domain inserted in FTSA AVFI_11550 PF08478 POTRA domain, FtsQ-type AVFI_11550 PF03799 Cell division protein FtsQ AVFI_11555 PF01225 Mur ligase family, catalytic domain AVFI_11555 PF08245 Mur ligase middle domain AVFI_11555 PF02875 Mur ligase family, glutamate ligase domain AVFI_11560 PF03033 Glycosyltransferase family 28 N-terminal domain AVFI_11560 PF04101 Glycosyltransferase family 28 C-terminal domain AVFI_11565 PF01098 Cell cycle protein AVFI_11570 PF08245 Mur ligase middle domain AVFI_11570 PF02875 Mur ligase family, glutamate ligase domain AVFI_11575 PF00953 Glycosyl transferase family 4 AVFI_11575 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AVFI_11580 PF02875 Mur ligase family, glutamate ligase domain AVFI_11580 PF08245 Mur ligase middle domain AVFI_11580 PF01225 Mur ligase family, catalytic domain AVFI_11585 PF08245 Mur ligase middle domain AVFI_11585 PF01225 Mur ligase family, catalytic domain AVFI_11585 PF02875 Mur ligase family, glutamate ligase domain AVFI_11590 PF03717 Penicillin-binding Protein dimerisation domain AVFI_11590 PF00905 Penicillin binding protein transpeptidase domain AVFI_11595 PF04999 Cell division protein FtsL AVFI_11600 PF01795 MraW methylase family AVFI_11610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVFI_11615 PF04348 LppC putative lipoprotein AVFI_11620 PF02021 Uncharacterised protein family UPF0102 AVFI_11625 PF13580 SIS domain AVFI_11630 PF04972 BON domain AVFI_11635 PF04386 Stringent starvation protein B AVFI_11640 PF02798 Glutathione S-transferase, N-terminal domain AVFI_11640 PF00043 Glutathione S-transferase, C-terminal domain AVFI_11645 PF02167 Cytochrome C1 family AVFI_11650 PF00033 Cytochrome b/b6/petB AVFI_11650 PF00032 Cytochrome b(C-terminal)/b6/petD AVFI_11655 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AVFI_11655 PF00355 Rieske [2Fe-2S] domain AVFI_11660 PF00380 Ribosomal protein S9/S16 AVFI_11665 PF00572 Ribosomal protein L13 AVFI_11670 PF03969 AFG1-like ATPase AVFI_11675 PF06295 Protein of unknown function (DUF1043) AVFI_11680 PF00595 PDZ domain AVFI_11685 PF13180 PDZ domain AVFI_11690 PF00521 DNA gyrase/topoisomerase IV, subunit A AVFI_11690 PF03989 DNA gyrase C-terminal domain, beta-propeller AVFI_11695 PF01751 Toprim domain AVFI_11695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_11695 PF00986 DNA gyrase B subunit, carboxyl terminus AVFI_11695 PF00204 DNA gyrase B AVFI_11700 PF05728 Uncharacterised protein family (UPF0227) AVFI_11705 PF00149 Calcineurin-like phosphoesterase AVFI_11710 PF06853 Protein of unknown function (DUF1249) AVFI_11715 PF00293 NUDIX domain AVFI_11720 PF02321 Outer membrane efflux protein AVFI_11725 PF01467 Cytidylyltransferase-like AVFI_11725 PF00294 pfkB family carbohydrate kinase AVFI_11730 PF03710 Glutamate-ammonia ligase adenylyltransferase AVFI_11730 PF08335 GlnD PII-uridylyltransferase AVFI_11735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_11735 PF12729 Four helix bundle sensory module for signal transduction AVFI_11735 PF00672 HAMP domain AVFI_11740 PF00027 Cyclic nucleotide-binding domain AVFI_11740 PF07885 Ion channel AVFI_11745 PF01928 CYTH domain AVFI_11750 PF01865 Protein of unknown function DUF47 AVFI_11755 PF01384 Phosphate transporter family AVFI_11760 PF08239 Bacterial SH3 domain AVFI_11770 PF13401 AAA domain AVFI_11770 PF01471 Putative peptidoglycan binding domain AVFI_11775 PF01743 Poly A polymerase head domain AVFI_11775 PF01966 HD domain AVFI_11775 PF12627 Probable RNA and SrmB- binding site of polymerase A AVFI_11785 PF02673 Bacitracin resistance protein BacA AVFI_11790 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AVFI_11795 PF02152 Dihydroneopterin aldolase AVFI_11800 PF02660 Glycerol-3-phosphate acyltransferase AVFI_11805 PF00814 Glycoprotease family AVFI_11810 PF01165 Ribosomal protein S21 AVFI_11815 PF09424 Yqey-like protein AVFI_11820 PF01807 CHC2 zinc finger AVFI_11820 PF08278 DNA primase DnaG DnaB-binding AVFI_11820 PF08275 DNA primase catalytic core, N-terminal domain AVFI_11820 PF10410 DnaB-helicase binding domain of primase AVFI_11825 PF04546 Sigma-70, non-essential region AVFI_11825 PF03979 Sigma-70 factor, region 1.1 AVFI_11825 PF00140 Sigma-70 factor, region 1.2 AVFI_11825 PF04542 Sigma-70 region 2 AVFI_11825 PF04539 Sigma-70 region 3 AVFI_11825 PF04545 Sigma-70, region 4 AVFI_11845 PF00501 AMP-binding enzyme AVFI_11845 PF13193 AMP-binding enzyme C-terminal domain AVFI_11855 PF00224 Pyruvate kinase, barrel domain AVFI_11855 PF02887 Pyruvate kinase, alpha/beta domain AVFI_11860 PF00392 Bacterial regulatory proteins, gntR family AVFI_11860 PF07729 FCD domain AVFI_11865 PF17158 Membrane-associated sensor, integral membrane domain AVFI_11865 PF00990 Diguanylate cyclase, GGDEF domain AVFI_11870 PF10369 Small subunit of acetolactate synthase AVFI_11875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVFI_11875 PF00205 Thiamine pyrophosphate enzyme, central domain AVFI_11875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVFI_11880 PF00501 AMP-binding enzyme AVFI_11885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_11885 PF03466 LysR substrate binding domain AVFI_11890 PF03447 Homoserine dehydrogenase, NAD binding domain AVFI_11890 PF00742 Homoserine dehydrogenase AVFI_11890 PF00696 Amino acid kinase family AVFI_11895 PF01053 Cys/Met metabolism PLP-dependent enzyme AVFI_11900 PF01340 Met Apo-repressor, MetJ AVFI_11905 PF02903 Alpha amylase, N-terminal ig-like domain AVFI_11905 PF00128 Alpha amylase, catalytic domain AVFI_11925 PF01197 Ribosomal protein L31 AVFI_11930 PF00270 DEAD/DEAH box helicase AVFI_11930 PF00271 Helicase conserved C-terminal domain AVFI_11930 PF17764 3′ DNA-binding domain (3′BD) AVFI_11930 PF18074 Primosomal protein N C-terminal domain AVFI_11930 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AVFI_11935 PF00356 Bacterial regulatory proteins, lacI family AVFI_11945 PF00227 Proteasome subunit AVFI_11950 PF10431 C-terminal, D2-small domain, of ClpB protein AVFI_11950 PF00004 ATPase family associated with various cellular activities (AAA) AVFI_11950 PF07724 AAA domain (Cdc48 subfamily) AVFI_11955 PF02566 OsmC-like protein AVFI_11960 PF00027 Cyclic nucleotide-binding domain AVFI_11960 PF13545 Crp-like helix-turn-helix domain AVFI_11970 PF00171 Aldehyde dehydrogenase family AVFI_11975 PF04958 Arginine N-succinyltransferase beta subunit AVFI_11980 PF00202 Aminotransferase class-III AVFI_11985 PF00117 Glutamine amidotransferase class-I AVFI_11990 PF00579 tRNA synthetases class I (W and Y) AVFI_11995 PF13419 Haloacid dehalogenase-like hydrolase AVFI_12000 PF00834 Ribulose-phosphate 3 epimerase family AVFI_12005 PF02086 D12 class N6 adenine-specific DNA methyltransferase AVFI_12015 PF01761 3-dehydroquinate synthase AVFI_12020 PF01202 Shikimate kinase AVFI_12025 PF03958 Bacterial type II/III secretion system short domain AVFI_12025 PF00263 Bacterial type II and III secretion system protein AVFI_12025 PF07660 Secretin and TonB N terminus short domain AVFI_12025 PF11741 AMIN domain AVFI_12050 PF17092 Penicillin-binding protein OB-like domain AVFI_12050 PF00912 Transglycosylase AVFI_12050 PF00905 Penicillin binding protein transpeptidase domain AVFI_12060 PF00462 Glutaredoxin AVFI_12060 PF08534 Redoxin AVFI_12065 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_12065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVFI_12075 PF00583 Acetyltransferase (GNAT) family AVFI_12075 PF00206 Lyase AVFI_12075 PF14698 Argininosuccinate lyase C-terminal AVFI_12080 PF00764 Arginosuccinate synthase AVFI_12085 PF00696 Amino acid kinase family AVFI_12090 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVFI_12090 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVFI_12095 PF07687 Peptidase dimerisation domain AVFI_12095 PF01546 Peptidase family M20/M25/M40 AVFI_12100 PF00311 Phosphoenolpyruvate carboxylase AVFI_12105 PF02219 Methylenetetrahydrofolate reductase AVFI_12110 PF03948 Ribosomal protein L9, C-terminal domain AVFI_12110 PF01281 Ribosomal protein L9, N-terminal domain AVFI_12115 PF01084 Ribosomal protein S18 AVFI_12120 PF00436 Single-strand binding protein family AVFI_12125 PF01250 Ribosomal protein S6 AVFI_12130 PF00588 SpoU rRNA Methylase family AVFI_12130 PF08032 RNA 2'-O ribose methyltransferase substrate binding AVFI_12135 PF17876 Cold shock domain AVFI_12135 PF08461 Ribonuclease R winged-helix domain AVFI_12135 PF08206 Ribonuclease B OB domain AVFI_12135 PF00773 RNB domain AVFI_12135 PF00575 S1 RNA binding domain AVFI_12140 PF02082 Transcriptional regulator AVFI_12145 PF00175 Oxidoreductase NAD-binding domain AVFI_12145 PF00042 Globin AVFI_12145 PF00970 Oxidoreductase FAD-binding domain AVFI_12150 PF08238 Sel1 repeat AVFI_12155 PF00709 Adenylosuccinate synthetase AVFI_12160 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AVFI_12165 PF01145 SPFH domain / Band 7 family AVFI_12170 PF01145 SPFH domain / Band 7 family AVFI_12170 PF12221 Bacterial membrane protein N terminal AVFI_12175 PF16360 GTP-binding GTPase Middle Region AVFI_12175 PF13167 GTP-binding GTPase N-terminal AVFI_12175 PF01926 50S ribosome-binding GTPase AVFI_12180 PF17209 Hfq protein AVFI_12190 PF08676 MutL C terminal dimerisation domain AVFI_12190 PF01119 DNA mismatch repair protein, C-terminal domain AVFI_12195 PF01520 N-acetylmuramoyl-L-alanine amidase AVFI_12200 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AVFI_12205 PF08331 Domain of unknown function (DUF1730) AVFI_12245 PF00929 Exonuclease AVFI_12250 PF03193 RsgA GTPase AVFI_12255 PF02666 Phosphatidylserine decarboxylase AVFI_12265 PF00152 tRNA synthetases class II (D, K and N) AVFI_12270 PF00890 FAD binding domain AVFI_12270 PF02910 Fumarate reductase flavoprotein C-term AVFI_12275 PF13085 2Fe-2S iron-sulfur cluster binding domain AVFI_12275 PF13183 4Fe-4S dicluster domain AVFI_12280 PF02300 Fumarate reductase subunit C AVFI_12285 PF02313 Fumarate reductase subunit D AVFI_12290 PF09285 Elongation factor P, C-terminal AVFI_12290 PF01132 Elongation factor P (EF-P) OB domain AVFI_12290 PF08207 Elongation factor P (EF-P) KOW-like domain AVFI_12295 PF04055 Radical SAM superfamily AVFI_12300 PF00365 Phosphofructokinase AVFI_12305 PF16916 Dimerisation domain of Zinc Transporter AVFI_12305 PF01545 Cation efflux family AVFI_12315 PF00072 Response regulator receiver domain AVFI_12315 PF00486 Transcriptional regulatory protein, C terminal AVFI_12320 PF16527 Two-component sensor protein CpxA, periplasmic domain AVFI_12320 PF00672 HAMP domain AVFI_12320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_12320 PF00512 His Kinase A (phospho-acceptor) domain AVFI_12325 PF00588 SpoU rRNA Methylase family AVFI_12330 PF06426 Serine acetyltransferase, N-terminal AVFI_12330 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_12335 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AVFI_12335 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AVFI_12340 PF02556 Preprotein translocase subunit SecB AVFI_12345 PF00581 Rhodanese-like domain AVFI_12350 PF01551 Peptidase family M23 AVFI_12355 PF04186 FxsA cytoplasmic membrane protein AVFI_12360 PF10415 Fumarase C C-terminus AVFI_12360 PF00206 Lyase AVFI_12370 PF00582 Universal stress protein family AVFI_12375 PF11412 Disulphide bond corrector protein DsbC AVFI_12375 PF02683 Cytochrome C biogenesis protein transmembrane region AVFI_12380 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AVFI_12395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVFI_12395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVFI_12400 PF01022 Bacterial regulatory protein, arsR family AVFI_12415 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_12430 PF00004 ATPase family associated with various cellular activities (AAA) AVFI_12430 PF17862 AAA+ lid domain AVFI_12430 PF06480 FtsH Extracellular AVFI_12430 PF01434 Peptidase family M41 AVFI_12435 PF00012 Hsp70 protein AVFI_12450 PF01380 SIS domain AVFI_12455 PF08220 DeoR-like helix-turn-helix domain AVFI_12455 PF00455 DeoR C terminal sensor domain AVFI_12460 PF00196 Bacterial regulatory proteins, luxR family AVFI_12460 PF00072 Response regulator receiver domain AVFI_12465 PF01914 MarC family integral membrane protein AVFI_12475 PF00474 Sodium:solute symporter family AVFI_12480 PF13493 Domain of unknown function (DUF4118) AVFI_12480 PF13492 GAF domain AVFI_12480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_12480 PF00512 His Kinase A (phospho-acceptor) domain AVFI_12480 PF02702 Osmosensitive K+ channel His kinase sensor domain AVFI_12485 PF12832 MFS_1 like family AVFI_12495 PF02811 PHP domain AVFI_12495 PF00929 Exonuclease AVFI_12495 PF14579 Helix-hairpin-helix motif AVFI_12495 PF01336 OB-fold nucleic acid binding domain AVFI_12495 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVFI_12495 PF11490 DNA polymerase III polC-type N-terminus II AVFI_12495 PF14480 DNA polymerase III polC-type N-terminus I AVFI_12495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVFI_12500 PF16177 Acetyl-coenzyme A synthetase N-terminus AVFI_12500 PF00501 AMP-binding enzyme AVFI_12500 PF13193 AMP-binding enzyme C-terminal domain AVFI_12505 PF01220 Dehydroquinase class II AVFI_12510 PF00364 Biotin-requiring enzyme AVFI_12515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVFI_12515 PF02785 Biotin carboxylase C-terminal domain AVFI_12515 PF00289 Biotin carboxylase, N-terminal domain AVFI_12525 PF01207 Dihydrouridine synthase (Dus) AVFI_12530 PF02954 Bacterial regulatory protein, Fis family AVFI_12540 PF00376 MerR family regulatory protein AVFI_12540 PF09278 MerR, DNA binding AVFI_12545 PF01808 AICARFT/IMPCHase bienzyme AVFI_12545 PF02142 MGS-like domain AVFI_12550 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AVFI_12550 PF02843 Phosphoribosylglycinamide synthetase, C domain AVFI_12550 PF02844 Phosphoribosylglycinamide synthetase, N domain AVFI_12560 PF00216 Bacterial DNA-binding protein AVFI_12565 PF01595 Cyclin M transmembrane N-terminal domain AVFI_12565 PF00571 CBS domain AVFI_12570 PF04222 Protein of unknown function (DUF416) AVFI_12575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVFI_12585 PF01208 Uroporphyrinogen decarboxylase (URO-D) AVFI_12590 PF00293 NUDIX domain AVFI_12590 PF09297 NADH pyrophosphatase zinc ribbon domain AVFI_12595 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AVFI_12600 PF03783 Curli production assembly/transport component CsgG AVFI_12615 PF00196 Bacterial regulatory proteins, luxR family AVFI_12630 PF05000 RNA polymerase Rpb1, domain 4 AVFI_12630 PF04997 RNA polymerase Rpb1, domain 1 AVFI_12630 PF00623 RNA polymerase Rpb1, domain 2 AVFI_12630 PF04983 RNA polymerase Rpb1, domain 3 AVFI_12630 PF04998 RNA polymerase Rpb1, domain 5 AVFI_12635 PF04560 RNA polymerase Rpb2, domain 7 AVFI_12635 PF00562 RNA polymerase Rpb2, domain 6 AVFI_12635 PF10385 RNA polymerase beta subunit external 1 domain AVFI_12635 PF04565 RNA polymerase Rpb2, domain 3 AVFI_12635 PF04561 RNA polymerase Rpb2, domain 2 AVFI_12635 PF04563 RNA polymerase beta subunit AVFI_12640 PF00542 Ribosomal protein L7/L12 C-terminal domain AVFI_12640 PF16320 Ribosomal protein L7/L12 dimerisation domain AVFI_12645 PF00466 Ribosomal protein L10 AVFI_12650 PF00687 Ribosomal protein L1p/L10e family AVFI_12655 PF03946 Ribosomal protein L11, N-terminal domain AVFI_12655 PF00298 Ribosomal protein L11, RNA binding domain AVFI_12660 PF00467 KOW motif AVFI_12660 PF02357 Transcription termination factor nusG AVFI_12665 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AVFI_12670 PF00009 Elongation factor Tu GTP binding domain AVFI_12670 PF03143 Elongation factor Tu C-terminal domain AVFI_12670 PF03144 Elongation factor Tu domain 2 AVFI_12695 PF00485 Phosphoribulokinase / Uridine kinase family AVFI_12700 PF02237 Biotin protein ligase C terminal domain AVFI_12700 PF08279 HTH domain AVFI_12700 PF03099 Biotin/lipoate A/B protein ligase family AVFI_12705 PF01565 FAD binding domain AVFI_12705 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AVFI_12715 PF13091 PLD-like domain AVFI_12810 PF01177 Asp/Glu/Hydantoin racemase AVFI_12820 PF07715 TonB-dependent Receptor Plug Domain AVFI_12820 PF00593 TonB dependent receptor AVFI_12825 PF05958 tRNA (Uracil-5-)-methyltransferase AVFI_12835 PF07226 Protein of unknown function (DUF1422) AVFI_12840 PF00440 Bacterial regulatory proteins, tetR family AVFI_12845 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_12845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVFI_12850 PF01554 MatE AVFI_12860 PF00717 Peptidase S24-like AVFI_12860 PF01726 LexA DNA binding domain AVFI_12865 PF01553 Acyltransferase AVFI_12870 PF01040 UbiA prenyltransferase family AVFI_12875 PF04345 Chorismate lyase AVFI_12880 PF03748 Flagellar basal body-associated protein FliL AVFI_12885 PF01694 Rhomboid family AVFI_12885 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AVFI_12890 PF00581 Rhodanese-like domain AVFI_12895 PF00140 Sigma-70 factor, region 1.2 AVFI_12895 PF04542 Sigma-70 region 2 AVFI_12895 PF04545 Sigma-70, region 4 AVFI_12900 PF18075 FtsX extracellular domain AVFI_12905 PF00005 ABC transporter AVFI_12910 PF02881 SRP54-type protein, helical bundle domain AVFI_12910 PF00448 SRP54-type protein, GTPase domain AVFI_12925 PF01914 MarC family integral membrane protein AVFI_12930 PF10678 Protein of unknown function (DUF2492) AVFI_12945 PF00270 DEAD/DEAH box helicase AVFI_12945 PF00271 Helicase conserved C-terminal domain AVFI_12945 PF17191 RecG wedge domain AVFI_12950 PF01521 Iron-sulphur cluster biosynthesis AVFI_12950 PF01106 NifU-like domain AVFI_12955 PF00459 Inositol monophosphatase family AVFI_12960 PF00293 NUDIX domain AVFI_12965 PF01203 Type II secretion system (T2SS), protein N AVFI_12970 PF04612 Type II secretion system (T2SS), protein M AVFI_12975 PF12693 GspL periplasmic domain AVFI_12975 PF05134 Type II secretion system (T2SS), protein L AVFI_12980 PF03934 Type II secretion system (T2SS), protein K AVFI_12985 PF11612 Type II secretion system (T2SS), protein J AVFI_12985 PF07963 Prokaryotic N-terminal methylation motif AVFI_12990 PF07963 Prokaryotic N-terminal methylation motif AVFI_12990 PF02501 Type II secretion system (T2SS), protein I AVFI_12995 PF12019 Type II transport protein GspH AVFI_13000 PF07963 Prokaryotic N-terminal methylation motif AVFI_13000 PF08334 Type II secretion system (T2SS), protein G AVFI_13005 PF00482 Type II secretion system (T2SS), protein F AVFI_13010 PF00437 Type II/IV secretion system protein AVFI_13015 PF00263 Bacterial type II and III secretion system protein AVFI_13015 PF03958 Bacterial type II/III secretion system short domain AVFI_13020 PF11356 Type II secretion system protein C AVFI_13025 PF01479 S4 domain AVFI_13030 PF01430 Hsp33 protein AVFI_13035 PF01293 Phosphoenolpyruvate carboxykinase AVFI_13045 PF00563 EAL domain AVFI_13045 PF08668 HDOD domain AVFI_13050 PF12146 Serine aminopeptidase, S33 AVFI_13060 PF02899 Phage integrase, N-terminal SAM-like domain AVFI_13060 PF00589 Phage integrase family AVFI_13070 PF01678 Diaminopimelate epimerase AVFI_13075 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AVFI_13075 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AVFI_13085 PF01491 Frataxin-like domain AVFI_13090 PF01432 Peptidase family M3 AVFI_13095 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AVFI_13100 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_13100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVFI_13140 PF01381 Helix-turn-helix AVFI_13185 PF00578 AhpC/TSA family AVFI_13190 PF11412 Disulphide bond corrector protein DsbC AVFI_13190 PF02683 Cytochrome C biogenesis protein transmembrane region AVFI_13205 PF00069 Protein kinase domain AVFI_13260 PF01979 Amidohydrolase family AVFI_13265 PF03841 L-seryl-tRNA selenium transferase AVFI_13270 PF07071 KDGP aldolase AVFI_13275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVFI_13275 PF00874 PRD domain AVFI_13275 PF05043 Mga helix-turn-helix domain AVFI_13275 PF08279 HTH domain AVFI_13290 PF00571 CBS domain AVFI_13300 PF02028 BCCT, betaine/carnitine/choline family transporter AVFI_13305 PF12911 N-terminal TM domain of oligopeptide transport permease C AVFI_13305 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_13310 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_13315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVFI_13320 PF00005 ABC transporter AVFI_13320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVFI_13350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVFI_13355 PF00580 UvrD/REP helicase N-terminal domain AVFI_13355 PF13361 UvrD-like helicase C-terminal domain AVFI_13360 PF16295 Tetracyclin repressor-like, C-terminal domain AVFI_13360 PF00440 Bacterial regulatory proteins, tetR family AVFI_13365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_13370 PF00873 AcrB/AcrD/AcrF family AVFI_13375 PF04380 Membrane fusogenic activity AVFI_13380 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AVFI_13380 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AVFI_13385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_13385 PF03466 LysR substrate binding domain AVFI_13430 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_13440 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AVFI_13440 PF01488 Shikimate / quinate 5-dehydrogenase AVFI_13440 PF08501 Shikimate dehydrogenase substrate binding domain AVFI_13445 PF01300 Telomere recombination AVFI_13450 PF00731 AIR carboxylase AVFI_13460 PF01396 Topoisomerase DNA binding C4 zinc finger AVFI_13465 PF04361 Protein of unknown function (DUF494) AVFI_13470 PF02481 DNA recombination-mediator protein A AVFI_13470 PF17782 DprA winged helix domain AVFI_13475 PF01476 LysM domain AVFI_13480 PF01327 Polypeptide deformylase AVFI_13485 PF02911 Formyl transferase, C-terminal domain AVFI_13485 PF00551 Formyl transferase AVFI_13490 PF01189 16S rRNA methyltransferase RsmB/F AVFI_13490 PF01029 NusB family AVFI_13495 PF02080 TrkA-C domain AVFI_13495 PF02254 TrkA-N domain AVFI_13500 PF02386 Cation transport protein AVFI_13505 PF03006 Haemolysin-III related AVFI_13520 PF06288 Protein of unknown function (DUF1040) AVFI_13525 PF13746 4Fe-4S dicluster domain AVFI_13525 PF12801 4Fe-4S binding domain AVFI_13525 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AVFI_13530 PF01636 Phosphotransferase enzyme family AVFI_13535 PF01323 DSBA-like thioredoxin domain AVFI_13540 PF01553 Acyltransferase AVFI_13545 PF01078 Magnesium chelatase, subunit ChlI AVFI_13545 PF13335 Magnesium chelatase, subunit ChlI C-terminal AVFI_13550 PF00205 Thiamine pyrophosphate enzyme, central domain AVFI_13550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVFI_13550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVFI_13560 PF01063 Amino-transferase class IV AVFI_13565 PF00920 Dehydratase family AVFI_13570 PF00291 Pyridoxal-phosphate dependent enzyme AVFI_13570 PF00585 C-terminal regulatory domain of Threonine dehydratase AVFI_13575 PF00313 'Cold-shock' DNA-binding domain AVFI_13580 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_13580 PF14602 Hexapeptide repeat of succinyl-transferase AVFI_13580 PF12804 MobA-like NTP transferase domain AVFI_13585 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AVFI_13585 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AVFI_13590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVFI_13590 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVFI_13595 PF00231 ATP synthase AVFI_13600 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVFI_13600 PF00306 ATP synthase alpha/beta chain, C terminal domain AVFI_13600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVFI_13605 PF00213 ATP synthase delta (OSCP) subunit AVFI_13610 PF00430 ATP synthase B/B' CF(0) AVFI_13615 PF00137 ATP synthase subunit C AVFI_13620 PF00119 ATP synthase A chain AVFI_13625 PF03899 ATP synthase I chain AVFI_13630 PF17762 HTH domain found in ParB protein AVFI_13630 PF02195 ParB-like nuclease domain AVFI_13635 PF13614 AAA domain AVFI_13640 PF02527 rRNA small subunit methyltransferase G AVFI_13645 PF01134 Glucose inhibited division protein A AVFI_13645 PF13932 GidA associated domain AVFI_13650 PF00258 Flavodoxin AVFI_13655 PF12631 MnmE helical domain AVFI_13655 PF01926 50S ribosome-binding GTPase AVFI_13655 PF10396 GTP-binding protein TrmE N-terminus AVFI_13660 PF02096 60Kd inner membrane protein AVFI_13660 PF14849 YidC periplasmic domain AVFI_13665 PF01809 Putative membrane protein insertion efficiency factor AVFI_13670 PF00825 Ribonuclease P AVFI_13675 PF00468 Ribosomal protein L34 AVFI_13680 PF00005 ABC transporter AVFI_13685 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_13690 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVFI_13700 PF03601 Conserved hypothetical protein 698 AVFI_13740 PF02472 Biopolymer transport protein ExbD/TolR AVFI_13745 PF01618 MotA/TolQ/ExbB proton channel family AVFI_13750 PF01618 MotA/TolQ/ExbB proton channel family AVFI_13760 PF00593 TonB dependent receptor AVFI_13760 PF07715 TonB-dependent Receptor Plug Domain AVFI_13765 PF03264 NapC/NirT cytochrome c family, N-terminal region AVFI_13770 PF00384 Molybdopterin oxidoreductase AVFI_13770 PF18364 Molybdopterin oxidoreductase N-terminal domain AVFI_13770 PF01568 Molydopterin dinucleotide binding domain AVFI_13775 PF00512 His Kinase A (phospho-acceptor) domain AVFI_13775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_13775 PF00672 HAMP domain AVFI_13775 PF16527 Two-component sensor protein CpxA, periplasmic domain AVFI_13780 PF00486 Transcriptional regulatory protein, C terminal AVFI_13780 PF00072 Response regulator receiver domain AVFI_13790 PF00072 Response regulator receiver domain AVFI_13790 PF00486 Transcriptional regulatory protein, C terminal AVFI_13795 PF00672 HAMP domain AVFI_13795 PF00512 His Kinase A (phospho-acceptor) domain AVFI_13795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_13800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AVFI_13800 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AVFI_13820 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVFI_13820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVFI_13825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_13825 PF17200 Single Cache domain 2 AVFI_13825 PF00672 HAMP domain AVFI_13830 PF00672 HAMP domain AVFI_13830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_13830 PF17200 Single Cache domain 2 AVFI_13845 PF16200 C-terminal region of band_7 AVFI_13845 PF01145 SPFH domain / Band 7 family AVFI_13855 PF00593 TonB dependent receptor AVFI_13855 PF07715 TonB-dependent Receptor Plug Domain AVFI_13860 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AVFI_13865 PF04183 IucA / IucC family AVFI_13865 PF06276 Ferric iron reductase FhuF-like transporter AVFI_13875 PF06276 Ferric iron reductase FhuF-like transporter AVFI_13875 PF04183 IucA / IucC family AVFI_13880 PF01032 FecCD transport family AVFI_13885 PF01497 Periplasmic binding protein AVFI_13890 PF00005 ABC transporter AVFI_13905 PF07694 5TMR of 5TMR-LYT AVFI_13905 PF00990 Diguanylate cyclase, GGDEF domain AVFI_13915 PF00271 Helicase conserved C-terminal domain AVFI_13915 PF03880 DbpA RNA binding domain AVFI_13915 PF00270 DEAD/DEAH box helicase AVFI_13920 PF07690 Major Facilitator Superfamily AVFI_13925 PF00990 Diguanylate cyclase, GGDEF domain AVFI_13925 PF00072 Response regulator receiver domain AVFI_13930 PF00270 DEAD/DEAH box helicase AVFI_13930 PF00271 Helicase conserved C-terminal domain AVFI_13935 PF01709 Transcriptional regulator AVFI_13960 PF01863 Protein of unknown function DUF45 AVFI_13970 PF18416 N-acetylglucosamine binding protein domain 2 AVFI_13970 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AVFI_13975 PF01228 Glycine radical AVFI_13975 PF02901 Pyruvate formate lyase-like AVFI_13980 PF01042 Endoribonuclease L-PSP AVFI_13985 PF00939 Sodium:sulfate symporter transmembrane region AVFI_14005 PF09313 Domain of unknown function (DUF1971) AVFI_14005 PF03848 Tellurite resistance protein TehB AVFI_14025 PF01610 Transposase AVFI_14025 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AVFI_14025 PF13542 Helix-turn-helix domain of transposase family ISL3 AVFI_14040 PF13005 zinc-finger binding domain of transposase IS66 AVFI_14040 PF13007 Transposase C of IS166 homeodomain AVFI_14040 PF13817 IS66 C-terminal element AVFI_14040 PF03050 Transposase IS66 family AVFI_14055 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AVFI_14055 PF01610 Transposase AVFI_14055 PF13542 Helix-turn-helix domain of transposase family ISL3 AVFI_14065 PF00854 POT family AVFI_14070 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_14070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVFI_14075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVFI_14080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVFI_14085 PF01609 Transposase DDE domain AVFI_14085 PF13006 Insertion element 4 transposase N-terminal AVFI_14095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVFI_14105 PF08241 Methyltransferase domain AVFI_14115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_14115 PF03466 LysR substrate binding domain AVFI_14125 PF00196 Bacterial regulatory proteins, luxR family AVFI_14125 PF00072 Response regulator receiver domain AVFI_14130 PF00512 His Kinase A (phospho-acceptor) domain AVFI_14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_14135 PF00581 Rhodanese-like domain AVFI_14150 PF09335 SNARE associated Golgi protein AVFI_14155 PF13416 Bacterial extracellular solute-binding protein AVFI_14160 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_14165 PF00005 ABC transporter AVFI_14170 PF01066 CDP-alcohol phosphatidyltransferase AVFI_14175 PF00860 Permease family AVFI_14180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_14180 PF08447 PAS fold AVFI_14190 PF13006 Insertion element 4 transposase N-terminal AVFI_14190 PF01609 Transposase DDE domain AVFI_14205 PF00037 4Fe-4S binding domain AVFI_14205 PF12838 4Fe-4S dicluster domain AVFI_14210 PF02613 Nitrate reductase delta subunit AVFI_14215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVFI_14215 PF00384 Molybdopterin oxidoreductase AVFI_14215 PF01568 Molydopterin dinucleotide binding domain AVFI_14220 PF13247 4Fe-4S dicluster domain AVFI_14220 PF12800 4Fe-4S binding domain AVFI_14225 PF04976 DMSO reductase anchor subunit (DmsC) AVFI_14260 PF00854 POT family AVFI_14265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_14265 PF00512 His Kinase A (phospho-acceptor) domain AVFI_14265 PF09308 LuxQ, periplasmic AVFI_14265 PF00072 Response regulator receiver domain AVFI_14310 PF08240 Alcohol dehydrogenase GroES-like domain AVFI_14310 PF00107 Zinc-binding dehydrogenase AVFI_14315 PF02378 Phosphotransferase system, EIIC AVFI_14315 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AVFI_14320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVFI_14325 PF07715 TonB-dependent Receptor Plug Domain AVFI_14325 PF00593 TonB dependent receptor AVFI_14335 PF03707 Bacterial signalling protein N terminal repeat AVFI_14335 PF00990 Diguanylate cyclase, GGDEF domain AVFI_14335 PF00563 EAL domain AVFI_14340 PF00563 EAL domain AVFI_14340 PF03707 Bacterial signalling protein N terminal repeat AVFI_14340 PF00990 Diguanylate cyclase, GGDEF domain AVFI_14350 PF13443 Cro/C1-type HTH DNA-binding domain AVFI_14355 PF03466 LysR substrate binding domain AVFI_14355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_14360 PF00106 short chain dehydrogenase AVFI_14365 PF09905 DNA-binding protein VF530 AVFI_14370 PF00873 AcrB/AcrD/AcrF family AVFI_14380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_14390 PF07690 Major Facilitator Superfamily AVFI_14395 PF00196 Bacterial regulatory proteins, luxR family AVFI_14395 PF00072 Response regulator receiver domain AVFI_14400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_14400 PF05231 MASE1 AVFI_14400 PF07730 Histidine kinase AVFI_14405 PF07690 Major Facilitator Superfamily AVFI_14410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_14420 PF07690 Major Facilitator Superfamily AVFI_14425 PF00753 Metallo-beta-lactamase superfamily AVFI_14425 PF14864 Alkyl sulfatase C-terminal AVFI_14425 PF14863 Alkyl sulfatase dimerisation AVFI_14430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_14430 PF03466 LysR substrate binding domain AVFI_14445 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_14455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_14455 PF03466 LysR substrate binding domain AVFI_14460 PF00892 EamA-like transporter family AVFI_14465 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVFI_14465 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVFI_14480 PF00854 POT family AVFI_14505 PF00701 Dihydrodipicolinate synthetase family AVFI_14510 PF00920 Dehydratase family AVFI_14515 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AVFI_14515 PF13378 Enolase C-terminal domain-like AVFI_14520 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AVFI_14520 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AVFI_14560 PF01381 Helix-turn-helix AVFI_14595 PF03480 Bacterial extracellular solute-binding protein, family 7 AVFI_14600 PF01081 KDPG and KHG aldolase AVFI_14605 PF05035 2-keto-3-deoxy-galactonokinase AVFI_14610 PF00392 Bacterial regulatory proteins, gntR family AVFI_14610 PF07729 FCD domain AVFI_14625 PF03193 RsgA GTPase AVFI_14635 PF14480 DNA polymerase III polC-type N-terminus I AVFI_14635 PF02811 PHP domain AVFI_14635 PF00929 Exonuclease AVFI_14635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVFI_14635 PF11490 DNA polymerase III polC-type N-terminus II AVFI_14635 PF14579 Helix-hairpin-helix motif AVFI_14635 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVFI_14640 PF00005 ABC transporter AVFI_14640 PF12848 ABC transporter AVFI_14660 PF00199 Catalase AVFI_14660 PF06628 Catalase-related immune-responsive AVFI_14665 PF01734 Patatin-like phospholipase AVFI_14670 PF04828 Glutathione-dependent formaldehyde-activating enzyme AVFI_14675 PF01625 Peptide methionine sulfoxide reductase AVFI_14675 PF01641 SelR domain AVFI_14680 PF07687 Peptidase dimerisation domain AVFI_14680 PF01546 Peptidase family M20/M25/M40 AVFI_14695 PF01042 Endoribonuclease L-PSP AVFI_14705 PF13614 AAA domain AVFI_14705 PF18607 ParA helix turn helix domain AVFI_14710 PF02195 ParB-like nuclease domain AVFI_14710 PF08775 ParB family AVFI_14720 PF05127 Helicase AVFI_14720 PF13718 GNAT acetyltransferase 2 AVFI_14725 PF00529 HlyD membrane-fusion protein of T1SS AVFI_14740 PF00664 ABC transporter transmembrane region AVFI_14740 PF00005 ABC transporter AVFI_14740 PF03412 Peptidase C39 family AVFI_14745 PF00691 OmpA family AVFI_14745 PF05736 OprF membrane domain AVFI_14760 PF13542 Helix-turn-helix domain of transposase family ISL3 AVFI_14760 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AVFI_14760 PF01610 Transposase AVFI_14765 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AVFI_14765 PF01243 Pyridoxamine 5'-phosphate oxidase AVFI_14770 PF03466 LysR substrate binding domain AVFI_14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_14775 PF07690 Major Facilitator Superfamily AVFI_14785 PF00271 Helicase conserved C-terminal domain AVFI_14785 PF00270 DEAD/DEAH box helicase AVFI_14785 PF00570 HRDC domain AVFI_14785 PF16124 RecQ zinc-binding AVFI_14785 PF09382 RQC domain AVFI_14790 PF00472 RF-1 domain AVFI_14795 PF10928 Protein of unknown function (DUF2810) AVFI_14800 PF05971 RNA methyltransferase AVFI_14805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_14805 PF00529 HlyD membrane-fusion protein of T1SS AVFI_14810 PF00873 AcrB/AcrD/AcrF family AVFI_14815 PF07702 UTRA domain AVFI_14815 PF00392 Bacterial regulatory proteins, gntR family AVFI_14820 PF13378 Enolase C-terminal domain-like AVFI_14820 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AVFI_14825 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AVFI_14825 PF02378 Phosphotransferase system, EIIC AVFI_14825 PF00367 phosphotransferase system, EIIB AVFI_14830 PF00294 pfkB family carbohydrate kinase AVFI_14835 PF01081 KDPG and KHG aldolase AVFI_14840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_14840 PF03466 LysR substrate binding domain AVFI_14850 PF00696 Amino acid kinase family AVFI_14860 PF01381 Helix-turn-helix AVFI_14865 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB AVFI_14875 PF06953 Arsenical resistance operon trans-acting repressor ArsD AVFI_14880 PF02374 Anion-transporting ATPase AVFI_14890 PF03466 LysR substrate binding domain AVFI_14890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_14980 PF12833 Helix-turn-helix domain AVFI_14985 PF13840 ACT domain AVFI_14985 PF00696 Amino acid kinase family AVFI_14990 PF06339 Ectoine synthase AVFI_14995 PF00202 Aminotransferase class-III AVFI_15000 PF00583 Acetyltransferase (GNAT) family AVFI_15030 PF01810 LysE type translocator AVFI_15035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15035 PF03466 LysR substrate binding domain AVFI_15045 PF01037 Lrp/AsnC ligand binding domain AVFI_15050 PF01810 LysE type translocator AVFI_15060 PF03466 LysR substrate binding domain AVFI_15060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15070 PF00924 Mechanosensitive ion channel AVFI_15070 PF05552 Conserved TM helix AVFI_15085 PF07690 Major Facilitator Superfamily AVFI_15090 PF13533 Biotin-lipoyl like AVFI_15095 PF00589 Phage integrase family AVFI_15135 PF00313 'Cold-shock' DNA-binding domain AVFI_15150 PF08402 TOBE domain AVFI_15150 PF00005 ABC transporter AVFI_15175 PF00579 tRNA synthetases class I (W and Y) AVFI_15180 PF03466 LysR substrate binding domain AVFI_15180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15185 PF02056 Family 4 glycosyl hydrolase AVFI_15185 PF11975 Family 4 glycosyl hydrolase C-terminal domain AVFI_15190 PF03466 LysR substrate binding domain AVFI_15190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15200 PF00672 HAMP domain AVFI_15200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_15205 PF00892 EamA-like transporter family AVFI_15210 PF01594 AI-2E family transporter AVFI_15225 PF03575 Peptidase family S51 AVFI_15240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15240 PF03466 LysR substrate binding domain AVFI_15260 PF17200 Single Cache domain 2 AVFI_15260 PF00672 HAMP domain AVFI_15260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_15270 PF01047 MarR family AVFI_15300 PF13673 Acetyltransferase (GNAT) domain AVFI_15305 PF00916 Sulfate permease family AVFI_15305 PF01740 STAS domain AVFI_15310 PF00582 Universal stress protein family AVFI_15315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVFI_15325 PF07690 Major Facilitator Superfamily AVFI_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15330 PF03466 LysR substrate binding domain AVFI_15335 PF01769 Divalent cation transporter AVFI_15335 PF00571 CBS domain AVFI_15335 PF03448 MgtE intracellular N domain AVFI_15340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15340 PF03466 LysR substrate binding domain AVFI_15345 PF04219 Protein of unknown function, DUF AVFI_15350 PF13472 GDSL-like Lipase/Acylhydrolase family AVFI_15355 PF00005 ABC transporter AVFI_15380 PF00990 Diguanylate cyclase, GGDEF domain AVFI_15380 PF03707 Bacterial signalling protein N terminal repeat AVFI_15380 PF13188 PAS domain AVFI_15380 PF00563 EAL domain AVFI_15385 PF02397 Bacterial sugar transferase AVFI_15395 PF13439 Glycosyltransferase Family 4 AVFI_15395 PF00534 Glycosyl transferases group 1 AVFI_15410 PF14602 Hexapeptide repeat of succinyl-transferase AVFI_15410 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_15410 PF12464 Maltose acetyltransferase AVFI_15430 PF00534 Glycosyl transferases group 1 AVFI_15430 PF13579 Glycosyl transferase 4-like domain AVFI_15435 PF00534 Glycosyl transferases group 1 AVFI_15435 PF13439 Glycosyltransferase Family 4 AVFI_15440 PF02954 Bacterial regulatory protein, Fis family AVFI_15440 PF00072 Response regulator receiver domain AVFI_15440 PF00158 Sigma-54 interaction domain AVFI_15445 PF00072 Response regulator receiver domain AVFI_15445 PF01627 Hpt domain AVFI_15445 PF00512 His Kinase A (phospho-acceptor) domain AVFI_15445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_15445 PF00672 HAMP domain AVFI_15445 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVFI_15450 PF00072 Response regulator receiver domain AVFI_15450 PF00486 Transcriptional regulatory protein, C terminal AVFI_15465 PF00691 OmpA family AVFI_15465 PF01389 OmpA-like transmembrane domain AVFI_15470 PF01740 STAS domain AVFI_15485 PF00072 Response regulator receiver domain AVFI_15490 PF00672 HAMP domain AVFI_15490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_15490 PF00512 His Kinase A (phospho-acceptor) domain AVFI_15490 PF01627 Hpt domain AVFI_15490 PF00072 Response regulator receiver domain AVFI_15490 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVFI_15495 PF04545 Sigma-70, region 4 AVFI_15495 PF04539 Sigma-70 region 3 AVFI_15495 PF04542 Sigma-70 region 2 AVFI_15495 PF00140 Sigma-70 factor, region 1.2 AVFI_15500 PF03707 Bacterial signalling protein N terminal repeat AVFI_15500 PF00990 Diguanylate cyclase, GGDEF domain AVFI_15500 PF00563 EAL domain AVFI_15510 PF00563 EAL domain AVFI_15510 PF01590 GAF domain AVFI_15510 PF00990 Diguanylate cyclase, GGDEF domain AVFI_15510 PF00360 Phytochrome region AVFI_15530 PF06496 Protein of unknown function (DUF1097) AVFI_15535 PF03173 Putative carbohydrate binding domain AVFI_15535 PF00728 Glycosyl hydrolase family 20, catalytic domain AVFI_15535 PF02838 Glycosyl hydrolase family 20, domain 2 AVFI_15535 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AVFI_15545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15545 PF03466 LysR substrate binding domain AVFI_15555 PF03707 Bacterial signalling protein N terminal repeat AVFI_15555 PF00990 Diguanylate cyclase, GGDEF domain AVFI_15555 PF00563 EAL domain AVFI_15570 PF01032 FecCD transport family AVFI_15575 PF00005 ABC transporter AVFI_15585 PF01979 Amidohydrolase family AVFI_15590 PF01048 Phosphorylase superfamily AVFI_15595 PF07670 Nucleoside recognition AVFI_15595 PF07662 Na+ dependent nucleoside transporter C-terminus AVFI_15595 PF01773 Na+ dependent nucleoside transporter N-terminus AVFI_15600 PF03313 Serine dehydratase alpha chain AVFI_15600 PF03315 Serine dehydratase beta chain AVFI_15605 PF00881 Nitroreductase family AVFI_15610 PF01169 Uncharacterized protein family UPF0016 AVFI_15615 PF03466 LysR substrate binding domain AVFI_15615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15625 PF04055 Radical SAM superfamily AVFI_15630 PF11230 Protein of unknown function (DUF3029) AVFI_15640 PF00990 Diguanylate cyclase, GGDEF domain AVFI_15640 PF07694 5TMR of 5TMR-LYT AVFI_15645 PF03009 Glycerophosphoryl diester phosphodiesterase family AVFI_15665 PF05638 Type VI secretion system effector, Hcp AVFI_15670 PF04717 Type VI secretion system, phage-baseplate injector AVFI_15695 PF00356 Bacterial regulatory proteins, lacI family AVFI_15695 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AVFI_15700 PF00381 PTS HPr component phosphorylation site AVFI_15700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVFI_15705 PF00294 pfkB family carbohydrate kinase AVFI_15710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AVFI_15710 PF02378 Phosphotransferase system, EIIC AVFI_15725 PF13419 Haloacid dehalogenase-like hydrolase AVFI_15740 PF03466 LysR substrate binding domain AVFI_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_15745 PF11756 Nitrous oxide-stimulated promoter AVFI_15755 PF01161 Phosphatidylethanolamine-binding protein AVFI_15760 PF12833 Helix-turn-helix domain AVFI_15770 PF07670 Nucleoside recognition AVFI_15775 PF07670 Nucleoside recognition AVFI_15780 PF11647 Membrane Localization Domain AVFI_15800 PF03472 Autoinducer binding domain AVFI_15800 PF00196 Bacterial regulatory proteins, luxR family AVFI_15805 PF00765 Autoinducer synthase AVFI_15810 PF05893 Acyl-CoA reductase (LuxC) AVFI_15815 PF02273 Acyl transferase AVFI_15820 PF00296 Luciferase-like monooxygenase AVFI_15825 PF00296 Luciferase-like monooxygenase AVFI_15830 PF04443 Acyl-protein synthetase, LuxE AVFI_15835 PF00175 Oxidoreductase NAD-binding domain AVFI_15840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVFI_15845 PF01554 MatE AVFI_15850 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AVFI_15850 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_15850 PF14602 Hexapeptide repeat of succinyl-transferase AVFI_15855 PF03471 Transporter associated domain AVFI_15855 PF01595 Cyclin M transmembrane N-terminal domain AVFI_15855 PF00571 CBS domain AVFI_15865 PF00005 ABC transporter AVFI_15870 PF02631 RecX family AVFI_15905 PF04972 BON domain AVFI_15905 PF00691 OmpA family AVFI_15940 PF00771 FHIPEP family AVFI_15955 PF04347 Flagellar biosynthesis protein, FliO AVFI_15955 PF00813 FliP family AVFI_15965 PF01312 FlhB HrpN YscU SpaS Family AVFI_15970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_15985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_15985 PF00672 HAMP domain AVFI_15985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVFI_15985 PF00512 His Kinase A (phospho-acceptor) domain AVFI_15985 PF01627 Hpt domain AVFI_15985 PF00072 Response regulator receiver domain AVFI_15995 PF00563 EAL domain AVFI_15995 PF08495 FIST N domain AVFI_15995 PF10442 FIST C domain AVFI_15995 PF00990 Diguanylate cyclase, GGDEF domain AVFI_16015 PF00388 Phosphatidylinositol-specific phospholipase C, X domain AVFI_16025 PF00691 OmpA family AVFI_16035 PF01610 Transposase AVFI_16035 PF13542 Helix-turn-helix domain of transposase family ISL3 AVFI_16035 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AVFI_16040 PF00854 POT family AVFI_16045 PF00581 Rhodanese-like domain AVFI_16060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AVFI_16065 PF03611 PTS system sugar-specific permease component AVFI_16070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVFI_16090 PF01610 Transposase AVFI_16090 PF13542 Helix-turn-helix domain of transposase family ISL3 AVFI_16090 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AVFI_16095 PF03497 Anthrax toxin LF subunit AVFI_16095 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AVFI_16110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_16125 PF07995 Glucose / Sorbosone dehydrogenase AVFI_16155 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AVFI_16180 PF18413 Neuraminidase-like domain AVFI_16180 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain AVFI_16185 PF00704 Glycosyl hydrolases family 18 AVFI_16190 PF00704 Glycosyl hydrolases family 18 AVFI_16195 PF03534 Salmonella virulence plasmid 65kDa B protein AVFI_16195 PF12256 Insecticide toxin TcdB middle/N-terminal region AVFI_16195 PF12255 Insecticide toxin TcdB middle/C-terminal region AVFI_16200 PF18807 Tripartite Tc toxins repeat AVFI_16200 PF14431 YwqJ-like deaminase AVFI_16205 PF14431 YwqJ-like deaminase AVFI_16205 PF18807 Tripartite Tc toxins repeat AVFI_16210 PF18807 Tripartite Tc toxins repeat AVFI_16210 PF14431 YwqJ-like deaminase AVFI_16220 PF03538 Salmonella virulence plasmid 28.1kDa A protein AVFI_16230 PF04055 Radical SAM superfamily AVFI_16235 PF02675 S-adenosylmethionine decarboxylase AVFI_16245 PF00691 OmpA family AVFI_16245 PF01389 OmpA-like transmembrane domain AVFI_16265 PF00529 HlyD membrane-fusion protein of T1SS AVFI_16265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_16280 PF04074 YhcH/YjgK/YiaL AVFI_16285 PF11658 Cellulose biosynthesis protein BcsG AVFI_16295 PF06564 Cellulose biosynthesis protein BcsQ AVFI_16300 PF03552 Cellulose synthase AVFI_16300 PF00535 Glycosyl transferase family 2 AVFI_16300 PF07238 PilZ domain AVFI_16305 PF03170 Bacterial cellulose synthase subunit AVFI_16310 PF01270 Glycosyl hydrolases family 8 AVFI_16315 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AVFI_16320 PF00175 Oxidoreductase NAD-binding domain AVFI_16320 PF00111 2Fe-2S iron-sulfur cluster binding domain AVFI_16320 PF00970 Oxidoreductase FAD-binding domain AVFI_16325 PF03063 Prismane/CO dehydrogenase family AVFI_16330 PF00158 Sigma-54 interaction domain AVFI_16330 PF01590 GAF domain AVFI_16345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_16350 PF01758 Sodium Bile acid symporter family AVFI_16370 PF01975 Survival protein SurE AVFI_16380 PF18027 Cytosolic carboxypeptidase N-terminal domain AVFI_16380 PF00246 Zinc carboxypeptidase AVFI_16385 PF00155 Aminotransferase class I and II AVFI_16390 PF12833 Helix-turn-helix domain AVFI_16390 PF01497 Periplasmic binding protein AVFI_16400 PF02798 Glutathione S-transferase, N-terminal domain AVFI_16415 PF04996 Succinylarginine dihydrolase AVFI_16435 PF08212 Lipocalin-like domain AVFI_16445 PF17944 Arginine decarboxylase C-terminal helical extension AVFI_16445 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AVFI_16445 PF17810 Arginine decarboxylase helical bundle domain AVFI_16450 PF00491 Arginase family AVFI_16465 PF00248 Aldo/keto reductase family AVFI_16470 PF03649 Uncharacterised protein family (UPF0014) AVFI_16500 PF03781 Sulfatase-modifying factor enzyme 1 AVFI_16505 PF12833 Helix-turn-helix domain AVFI_16510 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AVFI_16510 PF14850 DNA-binding domain of Proline dehydrogenase AVFI_16510 PF01619 Proline dehydrogenase AVFI_16510 PF00171 Aldehyde dehydrogenase family AVFI_16520 PF00474 Sodium:solute symporter family AVFI_16535 PF01610 Transposase AVFI_16535 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 AVFI_16535 PF13542 Helix-turn-helix domain of transposase family ISL3 AVFI_16545 PF01032 FecCD transport family AVFI_16550 PF01032 FecCD transport family AVFI_16555 PF00005 ABC transporter AVFI_16560 PF08021 Siderophore-interacting FAD-binding domain AVFI_16560 PF04954 Siderophore-interacting protein AVFI_16580 PF02630 SCO1/SenC AVFI_16590 PF00117 Glutamine amidotransferase class-I AVFI_16590 PF00958 GMP synthase C terminal domain AVFI_16590 PF13302 Acetyltransferase (GNAT) domain AVFI_16590 PF03352 Methyladenine glycosylase AVFI_16590 PF13673 Acetyltransferase (GNAT) domain AVFI_16600 PF01226 Formate/nitrite transporter AVFI_16610 PF00196 Bacterial regulatory proteins, luxR family AVFI_16610 PF17874 MalT-like TPR region AVFI_16620 PF02446 4-alpha-glucanotransferase AVFI_16625 PF00128 Alpha amylase, catalytic domain AVFI_16625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVFI_16625 PF02806 Alpha amylase, C-terminal all-beta domain AVFI_16630 PF02698 DUF218 domain AVFI_16635 PF00483 Nucleotidyl transferase AVFI_16640 PF00534 Glycosyl transferases group 1 AVFI_16640 PF08323 Starch synthase catalytic domain AVFI_16650 PF00375 Sodium:dicarboxylate symporter family AVFI_16655 PF00072 Response regulator receiver domain AVFI_16655 PF01584 CheW-like domain AVFI_16660 PF00128 Alpha amylase, catalytic domain AVFI_16660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVFI_16665 PF00005 ABC transporter AVFI_16665 PF17912 MalK OB fold domain AVFI_16670 PF01547 Bacterial extracellular solute-binding protein AVFI_16675 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_16675 PF14785 Maltose transport system permease protein MalF P2 domain AVFI_16685 PF00990 Diguanylate cyclase, GGDEF domain AVFI_16685 PF05230 MASE2 domain AVFI_16690 PF01339 CheB methylesterase AVFI_16690 PF00072 Response regulator receiver domain AVFI_16695 PF00871 Acetokinase family AVFI_16755 PF07517 SecA DEAD-like domain AVFI_16755 PF07516 SecA Wing and Scaffold domain AVFI_16755 PF01043 SecA preprotein cross-linking domain AVFI_16755 PF02810 SEC-C motif AVFI_16790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_16790 PF03466 LysR substrate binding domain AVFI_16795 PF00132 Bacterial transferase hexapeptide (six repeats) AVFI_16805 PF07517 SecA DEAD-like domain AVFI_16805 PF02810 SEC-C motif AVFI_16805 PF07516 SecA Wing and Scaffold domain AVFI_16805 PF01043 SecA preprotein cross-linking domain AVFI_16825 PF12161 HsdM N-terminal domain AVFI_16825 PF02384 N-6 DNA Methylase AVFI_16835 PF08463 EcoEI R protein C-terminal AVFI_16835 PF00271 Helicase conserved C-terminal domain AVFI_16835 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AVFI_16835 PF04851 Type III restriction enzyme, res subunit AVFI_16875 PF07690 Major Facilitator Superfamily AVFI_16880 PF02311 AraC-like ligand binding domain AVFI_16880 PF12833 Helix-turn-helix domain AVFI_16885 PF12848 ABC transporter AVFI_16885 PF00005 ABC transporter AVFI_16890 PF02378 Phosphotransferase system, EIIC AVFI_16890 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AVFI_16890 PF00367 phosphotransferase system, EIIB AVFI_16900 PF01618 MotA/TolQ/ExbB proton channel family AVFI_16905 PF01618 MotA/TolQ/ExbB proton channel family AVFI_16910 PF02472 Biopolymer transport protein ExbD/TolR AVFI_16940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_16940 PF03466 LysR substrate binding domain AVFI_16945 PF07690 Major Facilitator Superfamily AVFI_16955 PF00266 Aminotransferase class-V AVFI_16970 PF04542 Sigma-70 region 2 AVFI_16970 PF04545 Sigma-70, region 4 AVFI_16985 PF00106 short chain dehydrogenase AVFI_17045 PF00875 DNA photolyase AVFI_17045 PF03441 FAD binding domain of DNA photolyase AVFI_17050 PF08349 Protein of unknown function (DUF1722) AVFI_17055 PF18024 Helix-turn-helix domain AVFI_17055 PF00158 Sigma-54 interaction domain AVFI_17070 PF00202 Aminotransferase class-III AVFI_17075 PF04055 Radical SAM superfamily AVFI_17075 PF06968 Biotin and Thiamin Synthesis associated domain AVFI_17080 PF00155 Aminotransferase class I and II AVFI_17085 PF08241 Methyltransferase domain AVFI_17100 PF00529 HlyD membrane-fusion protein of T1SS AVFI_17100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_17110 PF02885 Glycosyl transferase family, helical bundle domain AVFI_17110 PF00591 Glycosyl transferase family, a/b domain AVFI_17115 PF01258 Prokaryotic dksA/traR C4-type zinc finger AVFI_17120 PF00583 Acetyltransferase (GNAT) family AVFI_17130 PF00005 ABC transporter AVFI_17135 PF12704 MacB-like periplasmic core domain AVFI_17135 PF02687 FtsX-like permease family AVFI_17150 PF07694 5TMR of 5TMR-LYT AVFI_17150 PF06580 Histidine kinase AVFI_17150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_17155 PF04397 LytTr DNA-binding domain AVFI_17155 PF00072 Response regulator receiver domain AVFI_17170 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AVFI_17170 PF12833 Helix-turn-helix domain AVFI_17185 PF12241 Trans-2-enoyl-CoA reductase catalytic region AVFI_17185 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AVFI_17185 PF07055 Enoyl reductase FAD binding domain AVFI_17190 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AVFI_17190 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AVFI_17195 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVFI_17195 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVFI_17195 PF00378 Enoyl-CoA hydratase/isomerase AVFI_17200 PF00108 Thiolase, N-terminal domain AVFI_17200 PF02803 Thiolase, C-terminal domain AVFI_17220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_17220 PF03466 LysR substrate binding domain AVFI_17240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVFI_17250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_17250 PF03466 LysR substrate binding domain AVFI_17260 PF03553 Na+/H+ antiporter family AVFI_17275 PF00691 OmpA family AVFI_17275 PF01389 OmpA-like transmembrane domain AVFI_17285 PF06483 Chitinase C AVFI_17285 PF00704 Glycosyl hydrolases family 18 AVFI_17320 PF01590 GAF domain AVFI_17320 PF02954 Bacterial regulatory protein, Fis family AVFI_17320 PF00158 Sigma-54 interaction domain AVFI_17325 PF10431 C-terminal, D2-small domain, of ClpB protein AVFI_17325 PF17871 AAA lid domain AVFI_17325 PF07724 AAA domain (Cdc48 subfamily) AVFI_17325 PF00004 ATPase family associated with various cellular activities (AAA) AVFI_17330 PF05638 Type VI secretion system effector, Hcp AVFI_17335 PF04717 Type VI secretion system, phage-baseplate injector AVFI_17355 PF00308 Bacterial dnaA protein AVFI_17355 PF08299 Bacterial dnaA protein helix-turn-helix AVFI_17355 PF11638 DnaA N-terminal domain AVFI_17360 PF03793 PASTA domain AVFI_17360 PF00069 Protein kinase domain AVFI_17370 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AVFI_17375 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AVFI_17385 PF05947 Type VI secretion system, TssF AVFI_17395 PF01037 Lrp/AsnC ligand binding domain AVFI_17410 PF01551 Peptidase family M23 AVFI_17410 PF08525 Opacity-associated protein A N-terminal motif AVFI_17410 PF01476 LysM domain AVFI_17450 PF00182 Chitinase class I AVFI_17465 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AVFI_17485 PF01734 Patatin-like phospholipase AVFI_17495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AVFI_17495 PF02378 Phosphotransferase system, EIIC AVFI_17495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVFI_17505 PF01238 Phosphomannose isomerase type I AVFI_17510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AVFI_17510 PF02378 Phosphotransferase system, EIIC AVFI_17510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVFI_17515 PF12833 Helix-turn-helix domain AVFI_17525 PF00990 Diguanylate cyclase, GGDEF domain AVFI_17525 PF00563 EAL domain AVFI_17525 PF03707 Bacterial signalling protein N terminal repeat AVFI_17530 PF02347 Glycine cleavage system P-protein AVFI_17535 PF01597 Glycine cleavage H-protein AVFI_17545 PF08669 Glycine cleavage T-protein C-terminal barrel domain AVFI_17545 PF01571 Aminomethyltransferase folate-binding domain AVFI_17550 PF01575 MaoC like domain AVFI_17555 PF01584 CheW-like domain AVFI_17555 PF00072 Response regulator receiver domain AVFI_17565 PF00294 pfkB family carbohydrate kinase AVFI_17570 PF00478 IMP dehydrogenase / GMP reductase domain AVFI_17585 PF00990 Diguanylate cyclase, GGDEF domain AVFI_17585 PF08448 PAS fold AVFI_17590 PF00881 Nitroreductase family AVFI_17610 PF03279 Bacterial lipid A biosynthesis acyltransferase AVFI_17615 PF02780 Transketolase, C-terminal domain AVFI_17615 PF00456 Transketolase, thiamine diphosphate binding domain AVFI_17615 PF02779 Transketolase, pyrimidine binding domain AVFI_17620 PF00923 Transaldolase/Fructose-6-phosphate aldolase AVFI_17630 PF07584 Aerotolerance regulator N-terminal AVFI_17630 PF13519 von Willebrand factor type A domain AVFI_17635 PF13519 von Willebrand factor type A domain AVFI_17645 PF01882 Protein of unknown function DUF58 AVFI_17650 PF07726 ATPase family associated with various cellular activities (AAA) AVFI_17650 PF17863 AAA lid domain AVFI_17655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_17655 PF02743 Cache domain AVFI_17655 PF00672 HAMP domain AVFI_17670 PF03061 Thioesterase superfamily AVFI_17685 PF13495 Phage integrase, N-terminal SAM-like domain AVFI_17685 PF00589 Phage integrase family AVFI_17885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVFI_17900 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AVFI_17910 PF01609 Transposase DDE domain AVFI_17910 PF13808 DDE_Tnp_1-associated AVFI_18025 PF00665 Integrase core domain AVFI_18025 PF13333 Integrase core domain AVFI_18025 PF13276 HTH-like domain AVFI_18100 PF13417 Glutathione S-transferase, N-terminal domain AVFI_18125 PF01810 LysE type translocator AVFI_18135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVFI_18180 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB AVFI_18185 PF01381 Helix-turn-helix AVFI_18210 PF04299 Putative FMN-binding domain AVFI_18215 PF03793 PASTA domain AVFI_18215 PF00069 Protein kinase domain AVFI_18240 PF13417 Glutathione S-transferase, N-terminal domain AVFI_18255 PF00106 short chain dehydrogenase AVFI_18260 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AVFI_18280 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AVFI_18285 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AVFI_18290 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AVFI_18295 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AVFI_18305 PF00665 Integrase core domain AVFI_18305 PF13276 HTH-like domain AVFI_18305 PF13333 Integrase core domain AVFI_18310 PF00106 short chain dehydrogenase AVFI_18315 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AVFI_18355 PF01810 LysE type translocator AVFI_18405 PF13333 Integrase core domain AVFI_18405 PF00665 Integrase core domain AVFI_18405 PF13276 HTH-like domain AVFI_18430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AVFI_18430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AVFI_18480 PF04463 Protein of unknown function (DUF523) AVFI_18500 PF02661 Fic/DOC family AVFI_18525 PF07670 Nucleoside recognition AVFI_18530 PF02371 Transposase IS116/IS110/IS902 family AVFI_18530 PF01548 Transposase AVFI_18580 PF00072 Response regulator receiver domain AVFI_18580 PF00486 Transcriptional regulatory protein, C terminal AVFI_18590 PF04363 Protein of unknown function (DUF496) AVFI_18600 PF04337 Protein of unknown function, DUF480 AVFI_18605 PF01541 GIY-YIG catalytic domain AVFI_18610 PF02540 NAD synthase AVFI_18615 PF01467 Cytidylyltransferase-like AVFI_18635 PF03466 LysR substrate binding domain AVFI_18635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_18645 PF00313 'Cold-shock' DNA-binding domain AVFI_18670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_18685 PF00691 OmpA family AVFI_18695 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AVFI_18695 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AVFI_18695 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AVFI_18700 PF02233 NAD(P) transhydrogenase beta subunit AVFI_18770 PF01253 Translation initiation factor SUI1 AVFI_18790 PF07478 D-ala D-ala ligase C-terminus AVFI_18790 PF01820 D-ala D-ala ligase N-terminus AVFI_18800 PF00583 Acetyltransferase (GNAT) family AVFI_18800 PF13380 CoA binding domain AVFI_18800 PF13607 Succinyl-CoA ligase like flavodoxin domain AVFI_18805 PF00563 EAL domain AVFI_18805 PF00990 Diguanylate cyclase, GGDEF domain AVFI_18805 PF03707 Bacterial signalling protein N terminal repeat AVFI_18815 PF00994 Probable molybdopterin binding domain AVFI_18825 PF03701 Uncharacterised protein family (UPF0181) AVFI_18835 PF00072 Response regulator receiver domain AVFI_18835 PF00486 Transcriptional regulatory protein, C terminal AVFI_18855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVFI_18855 PF12793 Sugar transport-related sRNA regulator N-term AVFI_18860 PF12833 Helix-turn-helix domain AVFI_18865 PF12849 PBP superfamily domain AVFI_18870 PF06865 Pyrimidine/purine nucleoside phosphorylase AVFI_18875 PF00270 DEAD/DEAH box helicase AVFI_18875 PF00271 Helicase conserved C-terminal domain AVFI_18885 PF00691 OmpA family AVFI_18915 PF01926 50S ribosome-binding GTPase AVFI_18920 PF07683 Cobalamin synthesis protein cobW C-terminal domain AVFI_18920 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVFI_18925 PF00005 ABC transporter AVFI_18925 PF00664 ABC transporter transmembrane region AVFI_18935 PF03616 Sodium/glutamate symporter AVFI_18940 PF11849 Domain of unknown function (DUF3369) AVFI_18985 PF05762 VWA domain containing CoxE-like protein AVFI_18990 PF12592 Protein of unknown function (DUF3763) AVFI_18990 PF17868 AAA lid domain AVFI_18990 PF07728 AAA domain (dynein-related subfamily) AVFI_18995 PF01212 Beta-eliminating lyase AVFI_19000 PF00480 ROK family AVFI_19005 PF04055 Radical SAM superfamily AVFI_19025 PF00933 Glycosyl hydrolase family 3 N terminal domain AVFI_19030 PF03702 Anhydro-N-acetylmuramic acid kinase AVFI_19040 PF13609 Gram-negative porin AVFI_19050 PF00849 RNA pseudouridylate synthase AVFI_19055 PF00849 RNA pseudouridylate synthase AVFI_19060 PF01098 Cell cycle protein AVFI_19065 PF03616 Sodium/glutamate symporter AVFI_19070 PF09335 SNARE associated Golgi protein AVFI_19075 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AVFI_19075 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVFI_19080 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AVFI_19085 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AVFI_19085 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AVFI_19095 PF00535 Glycosyl transferase family 2 AVFI_19110 PF02687 FtsX-like permease family AVFI_19110 PF12704 MacB-like periplasmic core domain AVFI_19115 PF00005 ABC transporter AVFI_19120 PF12704 MacB-like periplasmic core domain AVFI_19120 PF02687 FtsX-like permease family AVFI_19130 PF00270 DEAD/DEAH box helicase AVFI_19130 PF00271 Helicase conserved C-terminal domain AVFI_19130 PF03461 TRCF domain AVFI_19130 PF17757 UvrB interaction domain AVFI_19130 PF02559 CarD-like/TRCF domain AVFI_19145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVFI_19145 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AVFI_19155 PF07702 UTRA domain AVFI_19155 PF00392 Bacterial regulatory proteins, gntR family AVFI_19160 PF01979 Amidohydrolase family AVFI_19165 PF00491 Arginase family AVFI_19170 PF01175 Urocanase Rossmann-like domain AVFI_19170 PF17392 Urocanase C-terminal domain AVFI_19170 PF17391 Urocanase N-terminal domain AVFI_19175 PF00221 Aromatic amino acid lyase AVFI_19185 PF00672 HAMP domain AVFI_19185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_19190 PF12729 Four helix bundle sensory module for signal transduction AVFI_19190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_19190 PF00672 HAMP domain AVFI_19200 PF00873 AcrB/AcrD/AcrF family AVFI_19205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_19220 PF00842 Alanine racemase, C-terminal domain AVFI_19220 PF01168 Alanine racemase, N-terminal domain AVFI_19220 PF01757 Acyltransferase family AVFI_19225 PF12697 Alpha/beta hydrolase family AVFI_19235 PF02378 Phosphotransferase system, EIIC AVFI_19235 PF00367 phosphotransferase system, EIIB AVFI_19235 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AVFI_19245 PF00072 Response regulator receiver domain AVFI_19245 PF00486 Transcriptional regulatory protein, C terminal AVFI_19250 PF07689 KaiB domain AVFI_19250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_19250 PF00512 His Kinase A (phospho-acceptor) domain AVFI_19255 PF01556 DnaJ C terminal domain AVFI_19255 PF00684 DnaJ central domain AVFI_19255 PF00226 DnaJ domain AVFI_19260 PF04310 MukB N-terminal AVFI_19260 PF16330 MukB hinge domain AVFI_19265 PF04288 MukE-like family AVFI_19270 PF17192 MukF middle domain AVFI_19270 PF17193 MukF C-terminal domain AVFI_19270 PF03882 MukF winged-helix domain AVFI_19280 PF02698 DUF218 domain AVFI_19285 PF02348 Cytidylyltransferase AVFI_19290 PF03966 Trm112p-like protein AVFI_19295 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AVFI_19300 PF00664 ABC transporter transmembrane region AVFI_19300 PF00005 ABC transporter AVFI_19305 PF03772 Competence protein AVFI_19305 PF13567 Domain of unknown function (DUF4131) AVFI_19305 PF00753 Metallo-beta-lactamase superfamily AVFI_19320 PF01368 DHH family AVFI_19320 PF02833 DHHA2 domain AVFI_19365 PF03466 LysR substrate binding domain AVFI_19365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_19370 PF00155 Aminotransferase class I and II AVFI_19375 PF08240 Alcohol dehydrogenase GroES-like domain AVFI_19375 PF00107 Zinc-binding dehydrogenase AVFI_19390 PF13654 AAA domain AVFI_19390 PF05362 Lon protease (S16) C-terminal proteolytic domain AVFI_19400 PF03889 Alternative ribosome-rescue factor A AVFI_19405 PF01979 Amidohydrolase family AVFI_19410 PF00248 Aldo/keto reductase family AVFI_19420 PF12843 Putative quorum-sensing-regulated virulence factor AVFI_19440 PF00924 Mechanosensitive ion channel AVFI_19445 PF02386 Cation transport protein AVFI_19450 PF02254 TrkA-N domain AVFI_19450 PF02080 TrkA-C domain AVFI_19455 PF01048 Phosphorylase superfamily AVFI_19465 PF04198 Putative sugar-binding domain AVFI_19475 PF00990 Diguanylate cyclase, GGDEF domain AVFI_19485 PF02872 5'-nucleotidase, C-terminal domain AVFI_19485 PF00149 Calcineurin-like phosphoesterase AVFI_19490 PF11398 Protein of unknown function (DUF2813) AVFI_19495 PF00793 DAHP synthetase I family AVFI_19500 PF00005 ABC transporter AVFI_19505 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_19510 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVFI_19515 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_19520 PF00672 HAMP domain AVFI_19520 PF02743 Cache domain AVFI_19520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_19530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_19530 PF03466 LysR substrate binding domain AVFI_19535 PF01226 Formate/nitrite transporter AVFI_19540 PF13302 Acetyltransferase (GNAT) domain AVFI_19545 PF03880 DbpA RNA binding domain AVFI_19545 PF00270 DEAD/DEAH box helicase AVFI_19545 PF00271 Helicase conserved C-terminal domain AVFI_19550 PF00575 S1 RNA binding domain AVFI_19550 PF08206 Ribonuclease B OB domain AVFI_19550 PF00773 RNB domain AVFI_19560 PF00990 Diguanylate cyclase, GGDEF domain AVFI_19560 PF00072 Response regulator receiver domain AVFI_19565 PF11742 Protein of unknown function (DUF3302) AVFI_19570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVFI_19570 PF00529 HlyD membrane-fusion protein of T1SS AVFI_19575 PF02028 BCCT, betaine/carnitine/choline family transporter AVFI_19595 PF00270 DEAD/DEAH box helicase AVFI_19595 PF00271 Helicase conserved C-terminal domain AVFI_19605 PF00924 Mechanosensitive ion channel AVFI_19610 PF03729 Short repeat of unknown function (DUF308) AVFI_19630 PF08448 PAS fold AVFI_19630 PF00990 Diguanylate cyclase, GGDEF domain AVFI_19635 PF00850 Histone deacetylase domain AVFI_19640 PF05525 Branched-chain amino acid transport protein AVFI_19645 PF01042 Endoribonuclease L-PSP AVFI_19655 PF01235 Sodium:alanine symporter family AVFI_19660 PF01588 Putative tRNA binding domain AVFI_19665 PF00356 Bacterial regulatory proteins, lacI family AVFI_19670 PF00672 HAMP domain AVFI_19670 PF00512 His Kinase A (phospho-acceptor) domain AVFI_19670 PF00072 Response regulator receiver domain AVFI_19670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVFI_19670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_19670 PF01627 Hpt domain AVFI_19680 PF13533 Biotin-lipoyl like AVFI_19685 PF00873 AcrB/AcrD/AcrF family AVFI_19690 PF01263 Aldose 1-epimerase AVFI_19695 PF10509 Galactokinase galactose-binding signature AVFI_19695 PF08544 GHMP kinases C terminal AVFI_19695 PF00288 GHMP kinases N terminal domain AVFI_19700 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AVFI_19700 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AVFI_19705 PF16363 GDP-mannose 4,6 dehydratase AVFI_19710 PF00474 Sodium:solute symporter family AVFI_19715 PF00571 CBS domain AVFI_19715 PF01380 SIS domain AVFI_19725 PF00356 Bacterial regulatory proteins, lacI family AVFI_19730 PF02837 Glycosyl hydrolases family 2, sugar binding domain AVFI_19730 PF02929 Beta galactosidase small chain AVFI_19730 PF16353 Domain of unknown function(DUF4981) AVFI_19730 PF00703 Glycosyl hydrolases family 2 AVFI_19730 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AVFI_19735 PF04074 YhcH/YjgK/YiaL AVFI_19740 PF13520 Amino acid permease AVFI_19745 PF01966 HD domain AVFI_19750 PF03707 Bacterial signalling protein N terminal repeat AVFI_19750 PF00990 Diguanylate cyclase, GGDEF domain AVFI_19750 PF00563 EAL domain AVFI_19755 PF08448 PAS fold AVFI_19755 PF00990 Diguanylate cyclase, GGDEF domain AVFI_19760 PF00990 Diguanylate cyclase, GGDEF domain AVFI_19760 PF07694 5TMR of 5TMR-LYT AVFI_19765 PF13520 Amino acid permease AVFI_19775 PF01204 Trehalase AVFI_19785 PF02566 OsmC-like protein AVFI_19790 PF01047 MarR family AVFI_19795 PF13488 Glycine zipper AVFI_19795 PF00691 OmpA family AVFI_19810 PF00672 HAMP domain AVFI_19810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_19810 PF17200 Single Cache domain 2 AVFI_19815 PF11412 Disulphide bond corrector protein DsbC AVFI_19815 PF02683 Cytochrome C biogenesis protein transmembrane region AVFI_19820 PF00990 Diguanylate cyclase, GGDEF domain AVFI_19825 PF02581 Thiamine monophosphate synthase AVFI_19830 PF02110 Hydroxyethylthiazole kinase family AVFI_19835 PF03070 TENA/THI-4/PQQC family AVFI_19840 PF09084 NMT1/THI5 like AVFI_19845 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_19850 PF00005 ABC transporter AVFI_19855 PF08543 Phosphomethylpyrimidine kinase AVFI_19860 PF05128 Domain of unknown function (DUF697) AVFI_19865 PF04317 YcjX-like family, DUF463 AVFI_19880 PF04012 PspA/IM30 family AVFI_19885 PF02954 Bacterial regulatory protein, Fis family AVFI_19885 PF00158 Sigma-54 interaction domain AVFI_19890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVFI_19895 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_19900 PF12911 N-terminal TM domain of oligopeptide transport permease C AVFI_19900 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_19905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVFI_19905 PF00005 ABC transporter AVFI_19910 PF00005 ABC transporter AVFI_19925 PF12729 Four helix bundle sensory module for signal transduction AVFI_19925 PF00672 HAMP domain AVFI_19925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_19935 PF16875 Glycosyl hydrolase family 36 N-terminal domain AVFI_19935 PF16874 Glycosyl hydrolase family 36 C-terminal domain AVFI_19940 PF00672 HAMP domain AVFI_19940 PF02743 Cache domain AVFI_19940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_19945 PF01568 Molydopterin dinucleotide binding domain AVFI_19945 PF00384 Molybdopterin oxidoreductase AVFI_19945 PF18364 Molybdopterin oxidoreductase N-terminal domain AVFI_19950 PF03264 NapC/NirT cytochrome c family, N-terminal region AVFI_19955 PF06796 Periplasmic nitrate reductase protein NapE AVFI_19965 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AVFI_19975 PF13419 Haloacid dehalogenase-like hydrolase AVFI_19980 PF03459 TOBE domain AVFI_19980 PF00005 ABC transporter AVFI_19985 PF00528 Binding-protein-dependent transport system inner membrane component AVFI_19995 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AVFI_19995 PF07685 CobB/CobQ-like glutamine amidotransferase domain AVFI_20010 PF01464 Transglycosylase SLT domain AVFI_20015 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVFI_20015 PF01464 Transglycosylase SLT domain AVFI_20020 PF18030 RimK PreATP-grasp domain AVFI_20020 PF08443 RimK-like ATP-grasp domain AVFI_20025 PF00155 Aminotransferase class I and II AVFI_20035 PF03477 ATP cone domain AVFI_20035 PF13597 Anaerobic ribonucleoside-triphosphate reductase AVFI_20050 PF03741 Integral membrane protein TerC family AVFI_20055 PF18030 RimK PreATP-grasp domain AVFI_20055 PF08443 RimK-like ATP-grasp domain AVFI_20070 PF00990 Diguanylate cyclase, GGDEF domain AVFI_20100 PF05661 Protein of unknown function (DUF808) AVFI_20110 PF00486 Transcriptional regulatory protein, C terminal AVFI_20110 PF00072 Response regulator receiver domain AVFI_20115 PF18719 ArlS sensor domain AVFI_20115 PF00512 His Kinase A (phospho-acceptor) domain AVFI_20115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_20120 PF03476 MOSC N-terminal beta barrel domain AVFI_20120 PF03473 MOSC domain AVFI_20120 PF00111 2Fe-2S iron-sulfur cluster binding domain AVFI_20130 PF00893 Small Multidrug Resistance protein AVFI_20135 PF02525 Flavodoxin-like fold AVFI_20140 PF02254 TrkA-N domain AVFI_20140 PF00999 Sodium/hydrogen exchanger family AVFI_20160 PF00563 EAL domain AVFI_20160 PF00990 Diguanylate cyclase, GGDEF domain AVFI_20160 PF03707 Bacterial signalling protein N terminal repeat AVFI_20165 PF04237 YjbR AVFI_20170 PF12833 Helix-turn-helix domain AVFI_20180 PF07687 Peptidase dimerisation domain AVFI_20180 PF01546 Peptidase family M20/M25/M40 AVFI_20185 PF00037 4Fe-4S binding domain AVFI_20185 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVFI_20185 PF00384 Molybdopterin oxidoreductase AVFI_20185 PF01568 Molydopterin dinucleotide binding domain AVFI_20185 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AVFI_20190 PF01266 FAD dependent oxidoreductase AVFI_20190 PF04324 BFD-like [2Fe-2S] binding domain AVFI_20195 PF00890 FAD binding domain AVFI_20200 PF02754 Cysteine-rich domain AVFI_20200 PF13183 4Fe-4S dicluster domain AVFI_20210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVFI_20210 PF00672 HAMP domain AVFI_20210 PF16591 Helical bimodular sensor domain AVFI_20225 PF00990 Diguanylate cyclase, GGDEF domain AVFI_20230 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AVFI_20245 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AVFI_20245 PF01266 FAD dependent oxidoreductase AVFI_20250 PF08220 DeoR-like helix-turn-helix domain AVFI_20250 PF00455 DeoR C terminal sensor domain AVFI_20255 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AVFI_20255 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AVFI_20270 PF00072 Response regulator receiver domain AVFI_20270 PF18415 Histidine kinase receptor ArcB trans-membrane domain AVFI_20270 PF00989 PAS fold AVFI_20270 PF01627 Hpt domain AVFI_20270 PF00512 His Kinase A (phospho-acceptor) domain AVFI_20270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_20285 PF00691 OmpA family AVFI_20320 PF00437 Type II/IV secretion system protein AVFI_20335 PF04972 BON domain AVFI_20335 PF00263 Bacterial type II and III secretion system protein AVFI_20335 PF13629 Pilus formation protein N terminal region AVFI_20370 PF03466 LysR substrate binding domain AVFI_20370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVFI_20380 PF00884 Sulfatase AVFI_20385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVFI_20385 PF00672 HAMP domain AVFI_20385 PF00512 His Kinase A (phospho-acceptor) domain AVFI_20390 PF00072 Response regulator receiver domain AVFI_20390 PF00486 Transcriptional regulatory protein, C terminal AVFI_20395 PF00884 Sulfatase AVFI_20395 PF08019 Phosphoethanolamine transferase EptA/EptB AVFI_20415 PF13186 Iron-sulfur cluster-binding domain AVFI_20415 PF04055 Radical SAM superfamily